BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007283
(609 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 303 bits (775), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 190/621 (30%), Positives = 331/621 (53%), Gaps = 27/621 (4%)
Query: 1 MPQLAET--YTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAY 58
M + ++T + +P T RG +++ P + I Y NG SV + + + IY EH++
Sbjct: 1 MSEFSQTALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSH 60
Query: 59 PATVARFSPNGEWIASADVSGTVRIWGA-HNDHVLKKEFRVLSGRIDDLQWSPDGLRIVA 117
TVA+ SP+G + AS DV G VRIW H+LK V SG + D+ W + RI A
Sbjct: 61 QTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAA 120
Query: 118 CGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP 177
G+G+ + F++D+GT+ G G +R + S FKPSRPFRI + +D V +EGPP
Sbjct: 121 VGEGRER-FGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP 179
Query: 178 FKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPED----GHK 233
FKFK + H+ FV+ VR++PDGS F S D ++Y+G K G + H
Sbjct: 180 FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS 239
Query: 234 GSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQN 293
GSV+ ++WSPDG ++ +ASADK+ K+W+++ K++KT+ P G+ ++D +G +W
Sbjct: 240 GSVFGLTWSPDGTKIASASADKTIKIWNVATL---KVEKTI-PVGT-RIEDQQLGIIWTK 294
Query: 294 DFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWI 353
LV +S G I+ F +L GH K +TAL+ + D K + S+ +G I W
Sbjct: 295 QALVSISANGFIN-FVNPELGSIDQVRYGHNKAITALSS-SADGKTLFSADAEGHINSWD 352
Query: 354 QGIGYGGKLQRKENSQI--KCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSI--DIGS 409
G ++ ++ + + ++ T +D+ + V G + ++ + S
Sbjct: 353 ISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSS 412
Query: 410 QPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDG 469
QP L+V+ V + G ++ + + + + A++ D +G QD
Sbjct: 413 QPLGLAVSADGDIAVAACYKHIAIYSHGK--LTEVPISYNSSCVALSNDKQFVAVGGQDS 470
Query: 470 KLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKN 529
K+ VY + G +++E + H ++ + +S + + + D +R+ I + V+ +L +
Sbjct: 471 KVHVYKLSGASVSEVKTI-VHPAEITSVAFSNNGAFLVATDQSRKVIPY-SVANNFELAH 528
Query: 530 M---LYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAH-LGGVYGLA 585
+HTA++ C++WSP+N +ATGSLD VI++ ++KP+ + IKGAH + V +
Sbjct: 529 TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI 588
Query: 586 FTDEHSVVSSGEDACVRVWRL 606
+ +E ++VS+G+D+ ++ W +
Sbjct: 589 WLNETTIVSAGQDSNIKFWNV 609
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 244 bits (622), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 195/634 (30%), Positives = 309/634 (48%), Gaps = 58/634 (9%)
Query: 4 LAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSN-----PLQVSIYGEHAY 58
L E PST+R +S P +N+I Y G+S + L + P V G +
Sbjct: 6 LKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSS 65
Query: 59 PATVARFSP--NGEWIASADVSGTVRIWGAHNDHV-------LKKEFRVLSGRIDDLQWS 109
T +FSP +++ S D SG V +WG D +K EF+VL+G I D+ W
Sbjct: 66 VVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWD 125
Query: 110 PDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFL 169
+G R+ G+G+ V WDSG ++GE GHS+R+ +C K SRP R T G+D
Sbjct: 126 FEGRRLCVVGEGRDNFGV-FISWDSGNSLGEVSGHSQRINACHLKQSRPXRSXTVGDDGS 184
Query: 170 VNFYEGPPFKFKLSHRGH---SNFVNCVRFSPDGSKF-ISVSSDKKGIIYDGKTADKIGE 225
V FY+GPPFKF S R H +FV V FSPD +F I+V SD+K +DGK+ + +
Sbjct: 185 VVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY 244
Query: 226 LS-PEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDD 284
+ ++ +G ++A+SW D ++ T AD + +VWD++ + K TL G
Sbjct: 245 IEDDQEPVQGGIFALSW-LDSQKFATVGADATIRVWDVTTSKCVQ-KWTLDKQQLGNQQV 302
Query: 285 MLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSS 344
+V N ++ +SL GT++ + E +SGH K +TALTV +P ++S S
Sbjct: 303 GVVAT--GNGRIISLSLDGTLNFYELGHDEVLK-TISGHNKGITALTV---NP--LISGS 354
Query: 345 YDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANS 404
YDG I +W + Q N + + +E + +D+ + +
Sbjct: 355 YDGRIXEWSSSSXH----QDHSNLIVSLDNSKAQEYSSISWDDTL--------KVNGITK 402
Query: 405 IDIGSQPKDLSVALHYPELVLVSTDSGVVLLR-GAEVVSTINLRFPVTASAIAPDGSEAI 463
+ GSQPK S VL + D ++L +++ ++ L P SA++ +
Sbjct: 403 HEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSP--GSAVSLSQNYVA 460
Query: 464 IGSQDGK-LRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVS 522
+G ++G ++V+ + D + R S I SP + A+GDV + +++D S
Sbjct: 461 VGLEEGNTIQVFKL-SDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVXGKILLYDLQS 519
Query: 523 REVKLKNMLYHTARINCLAWSP----------NNSMVATGSLDTCVIIYEIDKPASSRMT 572
REVK + T++IN ++W P +VATGSLDT + IY + +P
Sbjct: 520 REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPXKIIKA 579
Query: 573 IKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRL 606
+ AH GV L + ++VSSG DAC++ W +
Sbjct: 580 LN-AHKDGVNNLLWETPSTLVSSGADACIKRWNV 612
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 579 GGVYGLAFTDEHSVVSSGEDACVRVWRLT 607
GG++ L++ D + G DA +RVW +T
Sbjct: 254 GGIFALSWLDSQKFATVGADATIRVWDVT 282
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 243 bits (621), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 195/634 (30%), Positives = 310/634 (48%), Gaps = 58/634 (9%)
Query: 4 LAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSN-----PLQVSIYGEHAY 58
L E PST+R +S P +N+I Y G+S + L + P V G +
Sbjct: 6 LKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSS 65
Query: 59 PATVARFSP--NGEWIASADVSGTVRIWGAHNDHV-------LKKEFRVLSGRIDDLQWS 109
T +FSP +++ S D SG V +WG D +K EF+VL+G I D+ W
Sbjct: 66 VVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWD 125
Query: 110 PDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFL 169
+G R+ G+G+ V WDSG ++GE GHS+R+ +C K SRP R T G+D
Sbjct: 126 FEGRRLCVVGEGRDNFGV-FISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGS 184
Query: 170 VNFYEGPPFKFKLSHRGH---SNFVNCVRFSPDGSKF-ISVSSDKKGIIYDGKTADKIGE 225
V FY+GPPFKF S R H +FV V FSPD +F I+V SD+K +DGK+ + +
Sbjct: 185 VVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY 244
Query: 226 LS-PEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDD 284
+ ++ +G ++A+SW D ++ T AD + +VWD++ + K TL G
Sbjct: 245 IEDDQEPVQGGIFALSW-LDSQKFATVGADATIRVWDVTTSKCVQ-KWTLDKQQLGNQQV 302
Query: 285 MLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSS 344
+V N ++ +SL GT++ + E +SGH K +TALTV +P ++S S
Sbjct: 303 GVVAT--GNGRIISLSLDGTLNFYELGHDEVLK-TISGHNKGITALTV---NP--LISGS 354
Query: 345 YDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANS 404
YDG I++W + Q N + + +E + +D+ + +
Sbjct: 355 YDGRIMEWSSSSMH----QDHSNLIVSLDNSKAQEYSSISWDDTL--------KVNGITK 402
Query: 405 IDIGSQPKDLSVALHYPELVLVSTDSGVVLLR-GAEVVSTINLRFPVTASAIAPDGSEAI 463
+ GSQPK S VL + D ++L +++ ++ L P SA++ +
Sbjct: 403 HEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSP--GSAVSLSQNYVA 460
Query: 464 IGSQDGK-LRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVS 522
+G ++G ++V+ + D + R S I SP + A+GDV + +++D S
Sbjct: 461 VGLEEGNTIQVFKL-SDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS 519
Query: 523 REVKLKNMLYHTARINCLAWSP----------NNSMVATGSLDTCVIIYEIDKPASSRMT 572
REVK + T++IN ++W P +VATGSLDT + IY + +P
Sbjct: 520 REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA 579
Query: 573 IKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRL 606
+ AH GV L + ++VSSG DAC++ W +
Sbjct: 580 LN-AHKDGVNNLLWETPSTLVSSGADACIKRWNV 612
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 579 GGVYGLAFTDEHSVVSSGEDACVRVWRLT 607
GG++ L++ D + G DA +RVW +T
Sbjct: 254 GGIFALSWLDSQKFATVGADATIRVWDVT 282
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 142/551 (25%), Positives = 247/551 (44%), Gaps = 50/551 (9%)
Query: 65 FSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGK 124
FSP+G+ IASA TV++W + + L + S + + +SPDG I + D K
Sbjct: 24 FSPDGQTIASASDDKTVKLW--NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK-- 79
Query: 125 SLVRAFMWD-SGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLS 183
+W+ +G + GHS V AF P IA+ +D V + + +
Sbjct: 80 ---TVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWN-RNGQLLQT 134
Query: 184 HRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGE-LSPEDGHKGSVYAVSWS 242
GHS+ V V FSPDG S S DK ++ ++ G+ L GH SV+ V++S
Sbjct: 135 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLW-----NRNGQLLQTLTGHSSSVWGVAFS 189
Query: 243 PDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLG 302
PDG+ + +AS DK+ K+W + +G+L +TLT G + G + D I S
Sbjct: 190 PDGQTIASASDDKTVKLW----NRNGQLLQTLT-----GHSSSVRGVAFSPDGQTIASAS 240
Query: 303 GTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKL 362
++ N + L+GH +V + D + I S+S D + W + L
Sbjct: 241 DDKTVKLWNRNGQLLQTLTGHSSSVNGV-AFRPDGQTIASASDDKTVKLWNRNGQLLQTL 299
Query: 363 QRKENSQIKCFAAIEEEIVTSGFDN---KIWRVSLQGDQ--CGYANSI-DIGSQPKDLSV 416
+S + + + + S D+ K+W + Q Q G+++S+ + P ++
Sbjct: 300 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTI 359
Query: 417 ALHYPELVLVSTDSGVVLL-RGAEVVSTIN-LRFPVTASAIAPDGSEAIIGSQDGKLRVY 474
A S D V L R +++ T+ V A +PDG S D ++++
Sbjct: 360 A-------SASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 412
Query: 475 SIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHT 534
+ G L L H +V + +SPD AS ++ +W+R + L+ + H+
Sbjct: 413 NRNGQLL---QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ--LLQTLTGHS 467
Query: 535 ARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVV 593
+ + +A+SP+ +A+ S D V ++ + +T H V G+AF+ D ++
Sbjct: 468 SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT---GHSSSVRGVAFSPDGQTIA 524
Query: 594 SSGEDACVRVW 604
S+ +D V++W
Sbjct: 525 SASDDKTVKLW 535
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 138/540 (25%), Positives = 244/540 (45%), Gaps = 55/540 (10%)
Query: 37 RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEF 96
++V + + + L ++ G + VA FSP+G+ IASA TV++W + + L +
Sbjct: 79 KTVKLWNRNGQLLQTLTGHSSSVRGVA-FSPDGQTIASASDDKTVKLW--NRNGQLLQTL 135
Query: 97 RVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWD-SGTNVGEFDGHSRRVLSCAFKP 155
S + + +SPDG I + D K +W+ +G + GHS V AF P
Sbjct: 136 TGHSSSVWGVAFSPDGQTIASASDDK-----TVKLWNRNGQLLQTLTGHSSSVWGVAFSP 190
Query: 156 SRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIY 215
IA+ +D V + + + GHS+ V V FSPDG S S DK ++
Sbjct: 191 DGQ-TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 248
Query: 216 DGKTADKIGEL-SPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTL 274
+ + G+L GH SV V++ PDG+ + +AS DK+ K+W+ +G+L +TL
Sbjct: 249 N-----RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN----RNGQLLQTL 299
Query: 275 TPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLN 334
T G + G + D I S ++ N + L+GH +V + +
Sbjct: 300 T-----GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGV-AFS 353
Query: 335 IDPKVILSSSYDGLIVKWIQGIGYGGKLQRK---ENSQIKCFA-AIEEEIVTSGFDNK-- 388
D + I S+S D + W G+L + +S ++ A + + + + S D+K
Sbjct: 354 PDGQTIASASDDKTVKLW----NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 409
Query: 389 -IWRVSLQGDQC--GYANSI-DIGSQPKDLSVALHYPELVLVSTDSGVVLL-RGAEVVST 443
+W + Q Q G+++S+ + P D ++A S D V L R +++ T
Sbjct: 410 KLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIAS-------ASDDKTVKLWNRNGQLLQT 462
Query: 444 IN-LRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPD 502
+ V A +PDG S D +++++ G L L H +V + +SPD
Sbjct: 463 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL---QTLTGHSSSVRGVAFSPD 519
Query: 503 VSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYE 562
AS ++ +W+R + L+ + H++ + +A+SP+ +A+ S D V ++
Sbjct: 520 GQTIASASDDKTVKLWNRNGQ--LLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 132/527 (25%), Positives = 233/527 (44%), Gaps = 48/527 (9%)
Query: 3 QLAETYTCVPSTERGRGILISGHPKSNSIL-YTNGRSVIILDLSNPLQVSIYGEHAYPAT 61
QL +T T S+ RG ++ P +I ++ ++V + + + L ++ G +
Sbjct: 89 QLLQTLTGHSSSVRG----VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWG 144
Query: 62 VARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDG 121
VA FSP+G+ IASA TV++W + + L + S + + +SPDG I + D
Sbjct: 145 VA-FSPDGQTIASASDDKTVKLW--NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD 201
Query: 122 KGKSLVRAFMWD-SGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKF 180
K +W+ +G + GHS V AF P IA+ +D V + +
Sbjct: 202 K-----TVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWN-RNGQL 254
Query: 181 KLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGEL-SPEDGHKGSVYAV 239
+ GHS+ VN V F PDG S S DK +++ + G+L GH SV+ V
Sbjct: 255 LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-----RNGQLLQTLTGHSSSVWGV 309
Query: 240 SWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIV 299
++SPDG+ + +AS DK+ K+W+ +G+ +TLT G + G + D I
Sbjct: 310 AFSPDGQTIASASDDKTVKLWN----RNGQHLQTLT-----GHSSSVWGVAFSPDGQTIA 360
Query: 300 SLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYG 359
S ++ N + L+GH +V + + D + I S+S D + W +
Sbjct: 361 SASDDKTVKLWNRNGQLLQTLTGHSSSVRGV-AFSPDGQTIASASDDKTVKLWNRNGQLL 419
Query: 360 GKLQRKENSQIKCFAAIEEEIVTSGFDNK---IWRVSLQGDQC--GYANSIDIGSQPKDL 414
L +S + +++ + S D+K +W + Q Q G+++S+ + +
Sbjct: 420 QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV------RGV 473
Query: 415 SVALHYPELVLVSTDSGVVLL-RGAEVVSTIN-LRFPVTASAIAPDGSEAIIGSQDGKLR 472
+ + + S D V L R +++ T+ V A +PDG S D ++
Sbjct: 474 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 533
Query: 473 VYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWD 519
+++ G L L H +V + +SPD AS ++ +W+
Sbjct: 534 LWNRNGQLL---QTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 119/469 (25%), Positives = 214/469 (45%), Gaps = 81/469 (17%)
Query: 187 HSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGEL-SPEDGHKGSVYAVSWSPDG 245
HS+ V V FSPDG S S DK +++ + G+L GH SV+ V++SPDG
Sbjct: 15 HSSSVRGVAFSPDGQTIASASDDKTVKLWN-----RNGQLLQTLTGHSSSVWGVAFSPDG 69
Query: 246 KQVLTASADKSAKVWDISEDNHGKLKKTLT------------PSG---SGGVDDMLVGCL 290
+ + +AS DK+ K+W + +G+L +TLT P G + DD V L
Sbjct: 70 QTIASASDDKTVKLW----NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV-KL 124
Query: 291 WQNDFLVIVSLGGTIS-------------IFSANDLEKSPL---------QLSGHMKNVT 328
W + ++ +L G S I SA+D + L L+GH +V
Sbjct: 125 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVW 184
Query: 329 ALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRK---ENSQIKCFA-AIEEEIVTSG 384
+ + D + I S+S D + W G+L + +S ++ A + + + + S
Sbjct: 185 GV-AFSPDGQTIASASDDKTVKLW----NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASA 239
Query: 385 FDN---KIWRVSLQGDQ--CGYANSID-IGSQPKDLSVALHYPELVLVSTDSGVVLL-RG 437
D+ K+W + Q Q G+++S++ + +P ++A S D V L R
Sbjct: 240 SDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIA-------SASDDKTVKLWNRN 292
Query: 438 AEVVSTIN-LRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSV 496
+++ T+ V A +PDG S D +++++ G L L H +V
Sbjct: 293 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL---QTLTGHSSSVWG 349
Query: 497 IRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDT 556
+ +SPD AS ++ +W+R + L+ + H++ + +A+SP+ +A+ S D
Sbjct: 350 VAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHSSSVRGVAFSPDGQTIASASDDK 407
Query: 557 CVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVW 604
V ++ + +T H V+G+AF+ D+ ++ S+ +D V++W
Sbjct: 408 TVKLWNRNGQLLQTLT---GHSSSVWGVAFSPDDQTIASASDDKTVKLW 453
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 93/391 (23%), Positives = 178/391 (45%), Gaps = 34/391 (8%)
Query: 223 IGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGV 282
+ E + + H SV V++SPDG+ + +AS DK+ K+W + +G+L +TLT G
Sbjct: 6 VKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLW----NRNGQLLQTLT-----GH 56
Query: 283 DDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILS 342
+ G + D I S ++ N + L+GH +V + + D + I S
Sbjct: 57 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGV-AFSPDGQTIAS 115
Query: 343 SSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDN---KIWRVSLQGDQ- 398
+S D + W + L +S + + + + S D+ K+W + Q Q
Sbjct: 116 ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT 175
Query: 399 -CGYANSI-DIGSQPKDLSVALHYPELVLVSTDSGVVLL-RGAEVVSTIN-LRFPVTASA 454
G+++S+ + P ++A S D V L R +++ T+ V A
Sbjct: 176 LTGHSSSVWGVAFSPDGQTIA-------SASDDKTVKLWNRNGQLLQTLTGHSSSVRGVA 228
Query: 455 IAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNRE 514
+PDG S D +++++ G L L H +V+ + + PD AS ++
Sbjct: 229 FSPDGQTIASASDDKTVKLWNRNGQLL---QTLTGHSSSVNGVAFRPDGQTIASASDDKT 285
Query: 515 AIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIK 574
+W+R + L+ + H++ + +A+SP+ +A+ S D V ++ ++ T+
Sbjct: 286 VKLWNRNGQ--LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW--NRNGQHLQTLT 341
Query: 575 GAHLGGVYGLAFT-DEHSVVSSGEDACVRVW 604
G H V+G+AF+ D ++ S+ +D V++W
Sbjct: 342 G-HSSSVWGVAFSPDGQTIASASDDKTVKLW 371
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 116/245 (47%), Gaps = 21/245 (8%)
Query: 36 GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKE 95
GR + + L+ ++ G H + +FSPNGEW+AS+ ++IWGA++ K
Sbjct: 6 GRGSEFVKPNYALKFTLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KF 60
Query: 96 FRVLSGR---IDDLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLS 150
+ +SG I D+ WS D +V+ D K + WD SG + GHS V
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI-----WDVSSGKCLKTLKGHSNYVFC 115
Query: 151 CAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDK 210
C F P I + D V ++ K + HS+ V+ V F+ DGS +S S D
Sbjct: 116 CNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 211 KGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKL 270
I+D + + L +D V V +SP+GK +L A+ D + K+WD S+ GK
Sbjct: 175 LCRIWDTASGQCLKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSK---GKC 229
Query: 271 KKTLT 275
KT T
Sbjct: 230 LKTYT 234
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 90/182 (49%), Gaps = 21/182 (11%)
Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII---YDGKTADKIGELSPEDGH 232
P + K + GH+ V+ V+FSP+G S S+DK I YDGK I GH
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 67
Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW- 291
K + V+WS D +++AS DK+ K+WD+S GK KTL G + + C +
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLK-----GHSNYVFCCNFN 119
Query: 292 -QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV 350
Q++ +V S ++ I+ K L H V+A+ N D +I+SSSYDGL
Sbjct: 120 PQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVH-FNRDGSLIVSSSYDGLCR 177
Query: 351 KW 352
W
Sbjct: 178 IW 179
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
L H AVS +++SP+ AS ++ +W + + K + H I+ +AWS +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 79
Query: 546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGE-DACVRVW 604
++++ + S D + I+++ + T+KG H V+ F + +++ SG D VR+W
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLK-TLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 122/300 (40%), Gaps = 28/300 (9%)
Query: 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL 290
GH +V +V +SP+G+ + ++SADK K+W + GK +KT++ G D
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD---GKFEKTISGHKLGISD-----VA 75
Query: 291 WQND--FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGL 348
W +D LV S T+ I+ + K L GH N N +I+S S+D
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGH-SNYVFCCNFNPQSNLIVSGSFDES 133
Query: 349 IVKWIQGIGYGGKLQRKENSQIKC--FAAIEEEIVTSGFDN--KIWRVSLQGDQCGYANS 404
+ W G K + + F IV+S +D +IW + QC
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA--SGQC-LKTL 190
Query: 405 IDIGSQPKDLSVALHYPELVLVSTDSGVVLL---RGAEVVSTI----NLRFPVTASAIAP 457
ID + P + +L +T + L + + T N ++ + A+
Sbjct: 191 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 250
Query: 458 DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIV 517
G + GS+D + +++++ + ++ L+ H V P ++ AS + + +
Sbjct: 251 GGKWIVSGSEDNLVYIWNLQTKEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTI 308
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 104/240 (43%), Gaps = 28/240 (11%)
Query: 34 TNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLK 93
++ +++ I D+S+ + H+ F+P I S +VRIW L
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL- 145
Query: 94 KEFRVLSGRIDDLQWSPDGLRIVACG-DGKGKSLVRAFMWDSGTNVGE-----FDGHSRR 147
K S + + ++ DG IV+ DG L R +WD+ + G+ D +
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG----LCR--IWDTAS--GQCLKTLIDDDNPP 197
Query: 148 VLSCAFKPSRPFRIATCGEDFLV--NFYEGPPFKFKLSHRGHSNFVNCV--RFSPDGSKF 203
V F P+ + +A ++ L ++ +G K ++ GH N C+ FS G K+
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK---TYTGHKNEKYCIFANFSVTGGKW 254
Query: 204 I-SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA--DKSAKVW 260
I S S D I++ +T + + +L GH V + + P + +A+ DK+ K++
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQ---GHTDVVISTACHPTENIIASAALENDKTIKLY 311
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/116 (17%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 447 RFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMF 506
+ ++ A + D + + S D L+++ + + L+ H V ++P ++
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK--TLKGHSNYVFCCNFNPQSNLI 125
Query: 507 ASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYE 562
SG + +WD + + LK + H+ ++ + ++ + S++ + S D I++
Sbjct: 126 VSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 116/245 (47%), Gaps = 21/245 (8%)
Query: 36 GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKE 95
GR + + L+ ++ G H + +FSPNGEW+AS+ ++IWGA++ K
Sbjct: 6 GRGSEFVKPNYALKFTLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KF 60
Query: 96 FRVLSGR---IDDLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLS 150
+ +SG I D+ WS D +V+ D K + WD SG + GHS V
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI-----WDVSSGKCLKTLKGHSNYVFC 115
Query: 151 CAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDK 210
C F P I + D V ++ K + HS+ V+ V F+ DGS +S S D
Sbjct: 116 CNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 211 KGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKL 270
I+D + + L +D V V +SP+GK +L A+ D + K+WD S+ GK
Sbjct: 175 LCRIWDTASGQCLKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSK---GKC 229
Query: 271 KKTLT 275
KT T
Sbjct: 230 LKTYT 234
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 90/182 (49%), Gaps = 21/182 (11%)
Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII---YDGKTADKIGELSPEDGH 232
P + K + GH+ V+ V+FSP+G S S+DK I YDGK I GH
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 67
Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW- 291
K + V+WS D +++AS DK+ K+WD+S GK KTL G + + C +
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLK-----GHSNYVFCCNFN 119
Query: 292 -QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV 350
Q++ +V S ++ I+ K L H V+A+ N D +I+SSSYDGL
Sbjct: 120 PQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVH-FNRDGSLIVSSSYDGLCR 177
Query: 351 KW 352
W
Sbjct: 178 IW 179
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
L H AVS +++SP+ AS ++ +W + + K + H I+ +AWS +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 79
Query: 546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGE-DACVRVW 604
++++ + S D + I+++ + T+KG H V+ F + +++ SG D VR+W
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLK-TLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 122/300 (40%), Gaps = 28/300 (9%)
Query: 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL 290
GH +V +V +SP+G+ + ++SADK K+W + GK +KT++ G D
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD---GKFEKTISGHKLGISD-----VA 75
Query: 291 WQND--FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGL 348
W +D LV S T+ I+ + K L GH N N +I+S S+D
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGH-SNYVFCCNFNPQSNLIVSGSFDES 133
Query: 349 IVKWIQGIGYGGKLQRKENSQIKC--FAAIEEEIVTSGFDN--KIWRVSLQGDQCGYANS 404
+ W G K + + F IV+S +D +IW + QC
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA--SGQC-LKTL 190
Query: 405 IDIGSQPKDLSVALHYPELVLVSTDSGVVLL---RGAEVVSTI----NLRFPVTASAIAP 457
ID + P + +L +T + L + + T N ++ + A+
Sbjct: 191 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 250
Query: 458 DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIV 517
G + GS+D + +++++ + ++ L+ H V P ++ AS + + +
Sbjct: 251 GGKWIVSGSEDNLVYIWNLQTKEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTI 308
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 104/240 (43%), Gaps = 28/240 (11%)
Query: 34 TNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLK 93
++ +++ I D+S+ + H+ F+P I S +VRIW L
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL- 145
Query: 94 KEFRVLSGRIDDLQWSPDGLRIVACG-DGKGKSLVRAFMWDSGTNVGE-----FDGHSRR 147
K S + + ++ DG IV+ DG L R +WD+ + G+ D +
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG----LCR--IWDTAS--GQCLKTLIDDDNPP 197
Query: 148 VLSCAFKPSRPFRIATCGEDFLV--NFYEGPPFKFKLSHRGHSNFVNCV--RFSPDGSKF 203
V F P+ + +A ++ L ++ +G K ++ GH N C+ FS G K+
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK---TYTGHKNEKYCIFANFSVTGGKW 254
Query: 204 I-SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA--DKSAKVW 260
I S S D I++ +T + + +L GH V + + P + +A+ DK+ K++
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQ---GHTDVVISTACHPTENIIASAALENDKTIKLF 311
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/116 (17%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 447 RFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMF 506
+ ++ A + D + + S D L+++ + + L+ H V ++P ++
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK--TLKGHSNYVFCCNFNPQSNLI 125
Query: 507 ASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYE 562
SG + +WD + + LK + H+ ++ + ++ + S++ + S D I++
Sbjct: 126 VSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 112/233 (48%), Gaps = 21/233 (9%)
Query: 48 LQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGR---ID 104
L+ ++ G H + +FSPNGEW+AS+ ++IWGA++ K + +SG I
Sbjct: 21 LKFTLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGIS 75
Query: 105 DLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIA 162
D+ WS D +V+ D K + WD SG + GHS V C F P I
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKI-----WDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IV 129
Query: 163 TCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK 222
+ D V ++ K + HS+ V+ V F+ DGS +S S D I+D +
Sbjct: 130 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 189
Query: 223 IGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT 275
+ L +D V V +SP+GK +L A+ D + K+WD S+ GK KT T
Sbjct: 190 LKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSK---GKCLKTYT 237
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 90/182 (49%), Gaps = 21/182 (11%)
Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII---YDGKTADKIGELSPEDGH 232
P + K + GH+ V+ V+FSP+G S S+DK I YDGK I GH
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 70
Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW- 291
K + V+WS D +++AS DK+ K+WD+S GK KTL G + + C +
Sbjct: 71 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLK-----GHSNYVFCCNFN 122
Query: 292 -QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV 350
Q++ +V S ++ I+ K L H V+A+ N D +I+SSSYDGL
Sbjct: 123 PQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVH-FNRDGSLIVSSSYDGLCR 180
Query: 351 KW 352
W
Sbjct: 181 IW 182
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
L H AVS +++SP+ AS ++ +W + + K + H I+ +AWS +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 82
Query: 546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGE-DACVRVW 604
++++ + S D + I+++ + T+KG H V+ F + +++ SG D VR+W
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLK-TLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 124/300 (41%), Gaps = 28/300 (9%)
Query: 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL 290
GH +V +V +SP+G+ + ++SADK K+W + GK +KT++ G+ D+
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD---GKFEKTIS-GHKLGISDV----A 78
Query: 291 WQND--FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGL 348
W +D LV S T+ I+ + K L GH N N +I+S S+D
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGH-SNYVFCCNFNPQSNLIVSGSFDES 136
Query: 349 IVKWIQGIGYGGKLQRKENSQIKC--FAAIEEEIVTSGFDN--KIWRVSLQGDQCGYANS 404
+ W G K + + F IV+S +D +IW + QC
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA--SGQC-LKTL 193
Query: 405 IDIGSQPKDLSVALHYPELVLVSTDSGVVLL---RGAEVVSTI----NLRFPVTASAIAP 457
ID + P + +L +T + L + + T N ++ + A+
Sbjct: 194 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 253
Query: 458 DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIV 517
G + GS+D + +++++ + ++ L+ H V P ++ AS + + +
Sbjct: 254 GGKWIVSGSEDNLVYIWNLQTKEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTI 311
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 102/238 (42%), Gaps = 24/238 (10%)
Query: 34 TNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLK 93
++ +++ I D+S+ + H+ F+P I S +VRIW L
Sbjct: 90 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL- 148
Query: 94 KEFRVLSGRIDDLQWSPDGLRIVACG-DGKGKSLVRAFMWDSGTNVGE-----FDGHSRR 147
K S + + ++ DG IV+ DG L R +WD+ + G+ D +
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG----LCR--IWDTAS--GQCLKTLIDDDNPP 200
Query: 148 VLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCV--RFSPDGSKFI- 204
V F P+ + +A ++ L ++ K ++ GH N C+ FS G K+I
Sbjct: 201 VSFVKFSPNGKYILAATLDNTL-KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 259
Query: 205 SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA--DKSAKVW 260
S S D I++ +T + + +L GH V + + P + +A+ DK+ K+W
Sbjct: 260 SGSEDNLVYIWNLQTKEIVQKL---QGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/116 (17%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 447 RFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMF 506
+ ++ A + D + + S D L+++ + + L+ H V ++P ++
Sbjct: 71 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK--TLKGHSNYVFCCNFNPQSNLI 128
Query: 507 ASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYE 562
SG + +WD + + LK + H+ ++ + ++ + S++ + S D I++
Sbjct: 129 VSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 112/233 (48%), Gaps = 21/233 (9%)
Query: 48 LQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGR---ID 104
L+ ++ G H + +FSPNGEW+AS+ ++IWGA++ K + +SG I
Sbjct: 11 LKFTLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGIS 65
Query: 105 DLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIA 162
D+ WS D +V+ D K + WD SG + GHS V C F P I
Sbjct: 66 DVAWSSDSNLLVSASDDKTLKI-----WDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IV 119
Query: 163 TCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK 222
+ D V ++ K + HS+ V+ V F+ DGS +S S D I+D +
Sbjct: 120 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 179
Query: 223 IGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT 275
+ L +D V V +SP+GK +L A+ D + K+WD S+ GK KT T
Sbjct: 180 LKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSK---GKCLKTYT 227
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 106/228 (46%), Gaps = 26/228 (11%)
Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII---YDGKTADKIGELSPEDGH 232
P + K + GH+ V+ V+FSP+G S S+DK I YDGK I GH
Sbjct: 7 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 60
Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW- 291
K + V+WS D +++AS DK+ K+WD+S GK KTL G + + C +
Sbjct: 61 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLK-----GHSNYVFCCNFN 112
Query: 292 -QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV 350
Q++ +V S ++ I+ K L H V+A+ N D +I+SSSYDGL
Sbjct: 113 PQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVH-FNRDGSLIVSSSYDGLCR 170
Query: 351 KWIQGIGYGGKLQRKENSQIKCFAAIE---EEIVTSGFDN--KIWRVS 393
W G K +++ F + I+ + DN K+W S
Sbjct: 171 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 218
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
L H AVS +++SP+ AS ++ +W + + K + H I+ +AWS +
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 72
Query: 546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGE-DACVRVW 604
++++ + S D + I+++ + T+KG H V+ F + +++ SG D VR+W
Sbjct: 73 SNLLVSASDDKTLKIWDVSSGKCLK-TLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIW 130
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 124/300 (41%), Gaps = 28/300 (9%)
Query: 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL 290
GH +V +V +SP+G+ + ++SADK K+W + GK +KT++ G+ D+
Sbjct: 17 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD---GKFEKTIS-GHKLGISDV----A 68
Query: 291 WQND--FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGL 348
W +D LV S T+ I+ + K L GH N N +I+S S+D
Sbjct: 69 WSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGH-SNYVFCCNFNPQSNLIVSGSFDES 126
Query: 349 IVKWIQGIGYGGKLQRKENSQIKC--FAAIEEEIVTSGFDN--KIWRVSLQGDQCGYANS 404
+ W G K + + F IV+S +D +IW + QC
Sbjct: 127 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA--SGQC-LKTL 183
Query: 405 IDIGSQPKDLSVALHYPELVLVSTDSGVVLL---RGAEVVSTI----NLRFPVTASAIAP 457
ID + P + +L +T + L + + T N ++ + A+
Sbjct: 184 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 243
Query: 458 DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIV 517
G + GS+D + +++++ + ++ L+ H V P ++ AS + + +
Sbjct: 244 GGKWIVSGSEDNLVYIWNLQTKEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTI 301
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 102/238 (42%), Gaps = 24/238 (10%)
Query: 34 TNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLK 93
++ +++ I D+S+ + H+ F+P I S +VRIW L
Sbjct: 80 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL- 138
Query: 94 KEFRVLSGRIDDLQWSPDGLRIVACG-DGKGKSLVRAFMWDSGTNVGE-----FDGHSRR 147
K S + + ++ DG IV+ DG L R +WD+ + G+ D +
Sbjct: 139 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG----LCR--IWDTAS--GQCLKTLIDDDNPP 190
Query: 148 VLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCV--RFSPDGSKFI- 204
V F P+ + +A ++ L ++ K ++ GH N C+ FS G K+I
Sbjct: 191 VSFVKFSPNGKYILAATLDNTL-KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 249
Query: 205 SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA--DKSAKVW 260
S S D I++ +T + + +L GH V + + P + +A+ DK+ K+W
Sbjct: 250 SGSEDNLVYIWNLQTKEIVQKLQ---GHTDVVISTACHPTENIIASAALENDKTIKLW 304
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/116 (17%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 447 RFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMF 506
+ ++ A + D + + S D L+++ + + L+ H V ++P ++
Sbjct: 61 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK--TLKGHSNYVFCCNFNPQSNLI 118
Query: 507 ASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYE 562
SG + +WD + + LK + H+ ++ + ++ + S++ + S D I++
Sbjct: 119 VSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 173
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 112/233 (48%), Gaps = 21/233 (9%)
Query: 48 LQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGR---ID 104
L+ ++ G H + +FSPNGEW+AS+ ++IWGA++ K + +SG I
Sbjct: 20 LKFTLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGIS 74
Query: 105 DLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIA 162
D+ WS D +V+ D K + WD SG + GHS V C F P I
Sbjct: 75 DVAWSSDSNLLVSASDDKTLKI-----WDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IV 128
Query: 163 TCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK 222
+ D V ++ K + HS+ V+ V F+ DGS +S S D I+D +
Sbjct: 129 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 188
Query: 223 IGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT 275
+ L +D V V +SP+GK +L A+ D + K+WD S+ GK KT T
Sbjct: 189 LKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSK---GKCLKTYT 236
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 90/182 (49%), Gaps = 21/182 (11%)
Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII---YDGKTADKIGELSPEDGH 232
P + K + GH+ V+ V+FSP+G S S+DK I YDGK I GH
Sbjct: 16 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 69
Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW- 291
K + V+WS D +++AS DK+ K+WD+S GK KTL G + + C +
Sbjct: 70 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLK-----GHSNYVFCCNFN 121
Query: 292 -QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV 350
Q++ +V S ++ I+ K L H V+A+ N D +I+SSSYDGL
Sbjct: 122 PQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVH-FNRDGSLIVSSSYDGLCR 179
Query: 351 KW 352
W
Sbjct: 180 IW 181
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
L H AVS +++SP+ AS ++ +W + + K + H I+ +AWS +
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 81
Query: 546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGE-DACVRVW 604
++++ + S D + I+++ + T+KG H V+ F + +++ SG D VR+W
Sbjct: 82 SNLLVSASDDKTLKIWDVSSGKCLK-TLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIW 139
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 124/300 (41%), Gaps = 28/300 (9%)
Query: 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL 290
GH +V +V +SP+G+ + ++SADK K+W + GK +KT++ G+ D+
Sbjct: 26 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD---GKFEKTIS-GHKLGISDV----A 77
Query: 291 WQND--FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGL 348
W +D LV S T+ I+ + K L GH N N +I+S S+D
Sbjct: 78 WSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGH-SNYVFCCNFNPQSNLIVSGSFDES 135
Query: 349 IVKWIQGIGYGGKLQRKENSQIKC--FAAIEEEIVTSGFDN--KIWRVSLQGDQCGYANS 404
+ W G K + + F IV+S +D +IW + QC
Sbjct: 136 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA--SGQC-LKTL 192
Query: 405 IDIGSQPKDLSVALHYPELVLVSTDSGVVLL---RGAEVVSTI----NLRFPVTASAIAP 457
ID + P + +L +T + L + + T N ++ + A+
Sbjct: 193 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 252
Query: 458 DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIV 517
G + GS+D + +++++ + ++ L+ H V P ++ AS + + +
Sbjct: 253 GGKWIVSGSEDNLVYIWNLQTKEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTI 310
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 102/238 (42%), Gaps = 24/238 (10%)
Query: 34 TNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLK 93
++ +++ I D+S+ + H+ F+P I S +VRIW L
Sbjct: 89 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL- 147
Query: 94 KEFRVLSGRIDDLQWSPDGLRIVACG-DGKGKSLVRAFMWDSGTNVGE-----FDGHSRR 147
K S + + ++ DG IV+ DG L R +WD+ + G+ D +
Sbjct: 148 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG----LCR--IWDTAS--GQCLKTLIDDDNPP 199
Query: 148 VLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCV--RFSPDGSKFI- 204
V F P+ + +A ++ L ++ K ++ GH N C+ FS G K+I
Sbjct: 200 VSFVKFSPNGKYILAATLDNTL-KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 258
Query: 205 SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA--DKSAKVW 260
S S D I++ +T + + +L GH V + + P + +A+ DK+ K+W
Sbjct: 259 SGSEDNLVYIWNLQTKEIVQKL---QGHTDVVISTACHPTENIIASAALENDKTIKLW 313
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/116 (17%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 447 RFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMF 506
+ ++ A + D + + S D L+++ + + L+ H V ++P ++
Sbjct: 70 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK--TLKGHSNYVFCCNFNPQSNLI 127
Query: 507 ASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYE 562
SG + +WD + + LK + H+ ++ + ++ + S++ + S D I++
Sbjct: 128 VSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 182
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 112/233 (48%), Gaps = 21/233 (9%)
Query: 48 LQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGR---ID 104
L+ ++ G H + +FSPNGEW+AS+ ++IWGA++ K + +SG I
Sbjct: 14 LKFTLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGIS 68
Query: 105 DLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIA 162
D+ WS D +V+ D K + WD SG + GHS V C F P I
Sbjct: 69 DVAWSSDSNLLVSASDDKTLKI-----WDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IV 122
Query: 163 TCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK 222
+ D V ++ K + HS+ V+ V F+ DGS +S S D I+D +
Sbjct: 123 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 182
Query: 223 IGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT 275
+ L +D V V +SP+GK +L A+ D + K+WD S+ GK KT T
Sbjct: 183 LKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSK---GKCLKTYT 230
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 108/228 (47%), Gaps = 26/228 (11%)
Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII---YDGKTADKIGELSPEDGH 232
P + K + GH+ V+ V+FSP+G S S+DK I YDGK I GH
Sbjct: 10 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 63
Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW- 291
K + V+WS D +++AS DK+ K+WD+S GK KTL G + + C +
Sbjct: 64 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLK-----GHSNYVFCCNFN 115
Query: 292 -QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV 350
Q++ +V S ++ I+ K L H V+A+ N D +I+SSSYDGL
Sbjct: 116 PQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVH-FNRDGSLIVSSSYDGLCR 173
Query: 351 KWIQGIGYGGK-LQRKENSQIKC--FAAIEEEIVTSGFDN--KIWRVS 393
W G K L +N + F+ + I+ + DN K+W S
Sbjct: 174 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 221
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
L H AVS +++SP+ AS ++ +W + + K + H I+ +AWS +
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 75
Query: 546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGE-DACVRVW 604
++++ + S D + I+++ + T+KG H V+ F + +++ SG D VR+W
Sbjct: 76 SNLLVSASDDKTLKIWDVSSGKCLK-TLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIW 133
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 124/300 (41%), Gaps = 28/300 (9%)
Query: 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL 290
GH +V +V +SP+G+ + ++SADK K+W + GK +KT++ G+ D+
Sbjct: 20 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD---GKFEKTIS-GHKLGISDV----A 71
Query: 291 WQND--FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGL 348
W +D LV S T+ I+ + K L GH N N +I+S S+D
Sbjct: 72 WSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGH-SNYVFCCNFNPQSNLIVSGSFDES 129
Query: 349 IVKWIQGIGYGGKLQRKENSQIKC--FAAIEEEIVTSGFDN--KIWRVSLQGDQCGYANS 404
+ W G K + + F IV+S +D +IW + QC
Sbjct: 130 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA--SGQC-LKTL 186
Query: 405 IDIGSQPKDLSVALHYPELVLVSTDSGVVLL---RGAEVVSTI----NLRFPVTASAIAP 457
ID + P + +L +T + L + + T N ++ + A+
Sbjct: 187 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 246
Query: 458 DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIV 517
G + GS+D + +++++ + ++ L+ H V P ++ AS + + +
Sbjct: 247 GGKWIVSGSEDNLVYIWNLQTKEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTI 304
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 102/238 (42%), Gaps = 24/238 (10%)
Query: 34 TNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLK 93
++ +++ I D+S+ + H+ F+P I S +VRIW L
Sbjct: 83 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL- 141
Query: 94 KEFRVLSGRIDDLQWSPDGLRIVACG-DGKGKSLVRAFMWDSGTNVGE-----FDGHSRR 147
K S + + ++ DG IV+ DG L R +WD+ + G+ D +
Sbjct: 142 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG----LCR--IWDTAS--GQCLKTLIDDDNPP 193
Query: 148 VLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCV--RFSPDGSKFI- 204
V F P+ + +A ++ L ++ K ++ GH N C+ FS G K+I
Sbjct: 194 VSFVKFSPNGKYILAATLDNTL-KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 252
Query: 205 SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA--DKSAKVW 260
S S D I++ +T + + +L GH V + + P + +A+ DK+ K+W
Sbjct: 253 SGSEDNLVYIWNLQTKEIVQKLQ---GHTDVVISTACHPTENIIASAALENDKTIKLW 307
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/116 (17%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 447 RFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMF 506
+ ++ A + D + + S D L+++ + + L+ H V ++P ++
Sbjct: 64 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK--TLKGHSNYVFCCNFNPQSNLI 121
Query: 507 ASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYE 562
SG + +WD + + LK + H+ ++ + ++ + S++ + S D I++
Sbjct: 122 VSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 176
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 112/233 (48%), Gaps = 21/233 (9%)
Query: 48 LQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGR---ID 104
L+ ++ G H + +FSPNGEW+AS+ ++IWGA++ K + +SG I
Sbjct: 32 LKFTLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGIS 86
Query: 105 DLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIA 162
D+ WS D +V+ D K + WD SG + GHS V C F P I
Sbjct: 87 DVAWSSDSNLLVSASDDKTLKI-----WDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IV 140
Query: 163 TCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK 222
+ D V ++ K + HS+ V+ V F+ DGS +S S D I+D +
Sbjct: 141 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 200
Query: 223 IGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT 275
+ L +D V V +SP+GK +L A+ D + K+WD S+ GK KT T
Sbjct: 201 LKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSK---GKCLKTYT 248
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 90/182 (49%), Gaps = 21/182 (11%)
Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII---YDGKTADKIGELSPEDGH 232
P + K + GH+ V+ V+FSP+G S S+DK I YDGK I GH
Sbjct: 28 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 81
Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW- 291
K + V+WS D +++AS DK+ K+WD+S GK KTL G + + C +
Sbjct: 82 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLK-----GHSNYVFCCNFN 133
Query: 292 -QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV 350
Q++ +V S ++ I+ K L H V+A+ N D +I+SSSYDGL
Sbjct: 134 PQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVH-FNRDGSLIVSSSYDGLCR 191
Query: 351 KW 352
W
Sbjct: 192 IW 193
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
L H AVS +++SP+ AS ++ +W + + K + H I+ +AWS +
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 93
Query: 546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGE-DACVRVW 604
++++ + S D + I+++ + T+KG H V+ F + +++ SG D VR+W
Sbjct: 94 SNLLVSASDDKTLKIWDVSSGKCLK-TLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIW 151
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 124/300 (41%), Gaps = 28/300 (9%)
Query: 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL 290
GH +V +V +SP+G+ + ++SADK K+W + GK +KT++ G+ D+
Sbjct: 38 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD---GKFEKTIS-GHKLGISDV----A 89
Query: 291 WQND--FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGL 348
W +D LV S T+ I+ + K L GH N N +I+S S+D
Sbjct: 90 WSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGH-SNYVFCCNFNPQSNLIVSGSFDES 147
Query: 349 IVKWIQGIGYGGKLQRKENSQIKC--FAAIEEEIVTSGFDN--KIWRVSLQGDQCGYANS 404
+ W G K + + F IV+S +D +IW + QC
Sbjct: 148 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA--SGQC-LKTL 204
Query: 405 IDIGSQPKDLSVALHYPELVLVSTDSGVVLL---RGAEVVSTI----NLRFPVTASAIAP 457
ID + P + +L +T + L + + T N ++ + A+
Sbjct: 205 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 264
Query: 458 DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIV 517
G + GS+D + +++++ + ++ L+ H V P ++ AS + + +
Sbjct: 265 GGKWIVSGSEDNLVYIWNLQTKEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTI 322
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 102/238 (42%), Gaps = 24/238 (10%)
Query: 34 TNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLK 93
++ +++ I D+S+ + H+ F+P I S +VRIW L
Sbjct: 101 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL- 159
Query: 94 KEFRVLSGRIDDLQWSPDGLRIVACG-DGKGKSLVRAFMWDSGTNVGE-----FDGHSRR 147
K S + + ++ DG IV+ DG L R +WD+ + G+ D +
Sbjct: 160 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG----LCR--IWDTAS--GQCLKTLIDDDNPP 211
Query: 148 VLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCV--RFSPDGSKFI- 204
V F P+ + +A ++ L ++ K ++ GH N C+ FS G K+I
Sbjct: 212 VSFVKFSPNGKYILAATLDNTL-KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 270
Query: 205 SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA--DKSAKVW 260
S S D I++ +T + + +L GH V + + P + +A+ DK+ K+W
Sbjct: 271 SGSEDNLVYIWNLQTKEIVQKL---QGHTDVVISTACHPTENIIASAALENDKTIKLW 325
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/116 (17%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 447 RFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMF 506
+ ++ A + D + + S D L+++ + + L+ H V ++P ++
Sbjct: 82 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK--TLKGHSNYVFCCNFNPQSNLI 139
Query: 507 ASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYE 562
SG + +WD + + LK + H+ ++ + ++ + S++ + S D I++
Sbjct: 140 VSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 194
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 112/233 (48%), Gaps = 21/233 (9%)
Query: 48 LQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGR---ID 104
L+ ++ G H + +FSPNGEW+AS+ ++IWGA++ K + +SG I
Sbjct: 15 LKFTLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGIS 69
Query: 105 DLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIA 162
D+ WS D +V+ D K + WD SG + GHS V C F P I
Sbjct: 70 DVAWSSDSNLLVSASDDKTLKI-----WDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IV 123
Query: 163 TCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK 222
+ D V ++ K + HS+ V+ V F+ DGS +S S D I+D +
Sbjct: 124 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 183
Query: 223 IGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT 275
+ L +D V V +SP+GK +L A+ D + K+WD S+ GK KT T
Sbjct: 184 LKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSK---GKCLKTYT 231
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 91/187 (48%), Gaps = 21/187 (11%)
Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII---YDGKTADKIGELSPEDGH 232
P + K + GH+ V+ V+FSP+G S S+DK I YDGK I GH
Sbjct: 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 64
Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW- 291
K + V+WS D +++AS DK+ K+WD+S GK KTL G + + C +
Sbjct: 65 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLK-----GHSNYVFCCNFN 116
Query: 292 -QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV 350
Q++ +V S ++ I+ K L H V+A+ N D +I+SSSYDGL
Sbjct: 117 PQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVH-FNRDGSLIVSSSYDGLCR 174
Query: 351 KWIQGIG 357
W G
Sbjct: 175 IWDTASG 181
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
L H AVS +++SP+ AS ++ +W + + K + H I+ +AWS +
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 76
Query: 546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGE-DACVRVW 604
++++ + S D + I+++ + T+KG H V+ F + +++ SG D VR+W
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLK-TLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 124/300 (41%), Gaps = 28/300 (9%)
Query: 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL 290
GH +V +V +SP+G+ + ++SADK K+W + GK +KT++ G+ D+
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD---GKFEKTIS-GHKLGISDV----A 72
Query: 291 WQND--FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGL 348
W +D LV S T+ I+ + K L GH N N +I+S S+D
Sbjct: 73 WSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGH-SNYVFCCNFNPQSNLIVSGSFDES 130
Query: 349 IVKWIQGIGYGGKLQRKENSQIKC--FAAIEEEIVTSGFDN--KIWRVSLQGDQCGYANS 404
+ W G K + + F IV+S +D +IW + QC
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA--SGQC-LKTL 187
Query: 405 IDIGSQPKDLSVALHYPELVLVSTDSGVVLL---RGAEVVSTI----NLRFPVTASAIAP 457
ID + P + +L +T + L + + T N ++ + A+
Sbjct: 188 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 247
Query: 458 DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIV 517
G + GS+D + +++++ + ++ L+ H V P ++ AS + + +
Sbjct: 248 GGKWIVSGSEDNLVYIWNLQTKEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTI 305
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 102/238 (42%), Gaps = 24/238 (10%)
Query: 34 TNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLK 93
++ +++ I D+S+ + H+ F+P I S +VRIW L
Sbjct: 84 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL- 142
Query: 94 KEFRVLSGRIDDLQWSPDGLRIVACG-DGKGKSLVRAFMWDSGTNVGE-----FDGHSRR 147
K S + + ++ DG IV+ DG L R +WD+ + G+ D +
Sbjct: 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG----LCR--IWDTAS--GQCLKTLIDDDNPP 194
Query: 148 VLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCV--RFSPDGSKFI- 204
V F P+ + +A ++ L ++ K ++ GH N C+ FS G K+I
Sbjct: 195 VSFVKFSPNGKYILAATLDNTL-KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 253
Query: 205 SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA--DKSAKVW 260
S S D I++ +T + + +L GH V + + P + +A+ DK+ K+W
Sbjct: 254 SGSEDNLVYIWNLQTKEIVQKLQ---GHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/116 (17%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 447 RFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMF 506
+ ++ A + D + + S D L+++ + + L+ H V ++P ++
Sbjct: 65 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK--TLKGHSNYVFCCNFNPQSNLI 122
Query: 507 ASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYE 562
SG + +WD + + LK + H+ ++ + ++ + S++ + S D I++
Sbjct: 123 VSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 112/233 (48%), Gaps = 21/233 (9%)
Query: 48 LQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGR---ID 104
L+ ++ G H + +FSPNGEW+AS+ ++IWGA++ K + +SG I
Sbjct: 15 LKFTLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGIS 69
Query: 105 DLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIA 162
D+ WS D +V+ D K + WD SG + GHS V C F P I
Sbjct: 70 DVAWSSDSNLLVSASDDKTLKI-----WDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IV 123
Query: 163 TCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK 222
+ D V ++ K + HS+ V+ V F+ DGS +S S D I+D +
Sbjct: 124 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 183
Query: 223 IGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT 275
+ L +D V V +SP+GK +L A+ D + K+WD S+ GK KT T
Sbjct: 184 LKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSK---GKCLKTYT 231
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 90/182 (49%), Gaps = 21/182 (11%)
Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII---YDGKTADKIGELSPEDGH 232
P + K + GH+ V+ V+FSP+G S S+DK I YDGK I GH
Sbjct: 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 64
Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW- 291
K + V+WS D +++AS DK+ K+WD+S GK KTL G + + C +
Sbjct: 65 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLK-----GHSNYVFCCNFN 116
Query: 292 -QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV 350
Q++ +V S ++ I+ K L H V+A+ N D +I+SSSYDGL
Sbjct: 117 PQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVH-FNRDGSLIVSSSYDGLCR 174
Query: 351 KW 352
W
Sbjct: 175 IW 176
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
L H AVS +++SP+ AS ++ +W + + K + H I+ +AWS +
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 76
Query: 546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGE-DACVRVW 604
++++ + S D + I+++ + T+KG H V+ F + +++ SG D VR+W
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLK-TLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 124/300 (41%), Gaps = 28/300 (9%)
Query: 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL 290
GH +V +V +SP+G+ + ++SADK K+W + GK +KT++ G+ D+
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD---GKFEKTIS-GHKLGISDV----A 72
Query: 291 WQND--FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGL 348
W +D LV S T+ I+ + K L GH N N +I+S S+D
Sbjct: 73 WSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGH-SNYVFCCNFNPQSNLIVSGSFDES 130
Query: 349 IVKWIQGIGYGGKLQRKENSQIKC--FAAIEEEIVTSGFDN--KIWRVSLQGDQCGYANS 404
+ W G K + + F IV+S +D +IW + QC
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA--SGQC-LKTL 187
Query: 405 IDIGSQPKDLSVALHYPELVLVSTDSGVVLL---RGAEVVSTI----NLRFPVTASAIAP 457
ID + P + +L +T + L + + T N ++ + A+
Sbjct: 188 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 247
Query: 458 DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIV 517
G + GS+D + +++++ + ++ L+ H V P ++ AS + + +
Sbjct: 248 GGKWIVSGSEDNLVYIWNLQTKEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTI 305
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 102/238 (42%), Gaps = 24/238 (10%)
Query: 34 TNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLK 93
++ +++ I D+S+ + H+ F+P I S +VRIW L
Sbjct: 84 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL- 142
Query: 94 KEFRVLSGRIDDLQWSPDGLRIVACG-DGKGKSLVRAFMWDSGTNVGE-----FDGHSRR 147
K S + + ++ DG IV+ DG L R +WD+ + G+ D +
Sbjct: 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG----LCR--IWDTAS--GQCLKTLIDDDNPP 194
Query: 148 VLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCV--RFSPDGSKFI- 204
V F P+ + +A ++ L ++ K ++ GH N C+ FS G K+I
Sbjct: 195 VSFVKFSPNGKYILAATLDNTL-KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 253
Query: 205 SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA--DKSAKVW 260
S S D I++ +T + + +L GH V + + P + +A+ DK+ K+W
Sbjct: 254 SGSEDNLVYIWNLQTKEIVQKLQ---GHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/116 (17%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 447 RFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMF 506
+ ++ A + D + + S D L+++ + + L+ H V ++P ++
Sbjct: 65 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK--TLKGHSNYVFCCNFNPQSNLI 122
Query: 507 ASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYE 562
SG + +WD + + LK + H+ ++ + ++ + S++ + S D I++
Sbjct: 123 VSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 112/233 (48%), Gaps = 21/233 (9%)
Query: 48 LQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGR---ID 104
L+ ++ G H + +FSPNGEW+AS+ ++IWGA++ K + +SG I
Sbjct: 37 LKFTLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGIS 91
Query: 105 DLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIA 162
D+ WS D +V+ D K + WD SG + GHS V C F P I
Sbjct: 92 DVAWSSDSNLLVSASDDKTLKI-----WDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IV 145
Query: 163 TCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK 222
+ D V ++ K + HS+ V+ V F+ DGS +S S D I+D +
Sbjct: 146 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 205
Query: 223 IGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT 275
+ L +D V V +SP+GK +L A+ D + K+WD S+ GK KT T
Sbjct: 206 LKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSK---GKCLKTYT 253
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 91/187 (48%), Gaps = 21/187 (11%)
Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII---YDGKTADKIGELSPEDGH 232
P + K + GH+ V+ V+FSP+G S S+DK I YDGK I GH
Sbjct: 33 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 86
Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW- 291
K + V+WS D +++AS DK+ K+WD+S GK KTL G + + C +
Sbjct: 87 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLK-----GHSNYVFCCNFN 138
Query: 292 -QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV 350
Q++ +V S ++ I+ K L H V+A+ N D +I+SSSYDGL
Sbjct: 139 PQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVH-FNRDGSLIVSSSYDGLCR 196
Query: 351 KWIQGIG 357
W G
Sbjct: 197 IWDTASG 203
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 4/120 (3%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
L H AVS +++SP+ AS ++ +W + + K + H I+ +AWS +
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 98
Query: 546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGE-DACVRVW 604
++++ + S D + I+++ T+KG H V+ F + +++ SG D VR+W
Sbjct: 99 SNLLVSASDDKTLKIWDVSS-GKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIW 156
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 124/300 (41%), Gaps = 28/300 (9%)
Query: 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL 290
GH +V +V +SP+G+ + ++SADK K+W + GK +KT++ G+ D+
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD---GKFEKTIS-GHKLGISDV----A 94
Query: 291 WQND--FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGL 348
W +D LV S T+ I+ + K L GH N N +I+S S+D
Sbjct: 95 WSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGH-SNYVFCCNFNPQSNLIVSGSFDES 152
Query: 349 IVKWIQGIGYGGKLQRKENSQIKC--FAAIEEEIVTSGFDN--KIWRVSLQGDQCGYANS 404
+ W G K + + F IV+S +D +IW + QC
Sbjct: 153 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA--SGQC-LKTL 209
Query: 405 IDIGSQPKDLSVALHYPELVLVSTDSGVVLL---RGAEVVSTI----NLRFPVTASAIAP 457
ID + P + +L +T + L + + T N ++ + A+
Sbjct: 210 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 269
Query: 458 DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIV 517
G + GS+D + +++++ + ++ L+ H V P ++ AS + + +
Sbjct: 270 GGKWIVSGSEDNLVYIWNLQTKEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTI 327
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 102/238 (42%), Gaps = 24/238 (10%)
Query: 34 TNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLK 93
++ +++ I D+S+ + H+ F+P I S +VRIW L
Sbjct: 106 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL- 164
Query: 94 KEFRVLSGRIDDLQWSPDGLRIVACG-DGKGKSLVRAFMWDSGTNVGE-----FDGHSRR 147
K S + + ++ DG IV+ DG L R +WD+ + G+ D +
Sbjct: 165 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG----LCR--IWDTAS--GQCLKTLIDDDNPP 216
Query: 148 VLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCV--RFSPDGSKFI- 204
V F P+ + +A ++ L ++ K ++ GH N C+ FS G K+I
Sbjct: 217 VSFVKFSPNGKYILAATLDNTL-KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 275
Query: 205 SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA--DKSAKVW 260
S S D I++ +T + + +L GH V + + P + +A+ DK+ K+W
Sbjct: 276 SGSEDNLVYIWNLQTKEIVQKL---QGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/116 (17%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 447 RFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMF 506
+ ++ A + D + + S D L+++ + + L+ H V ++P ++
Sbjct: 87 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK--TLKGHSNYVFCCNFNPQSNLI 144
Query: 507 ASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYE 562
SG + +WD + + LK + H+ ++ + ++ + S++ + S D I++
Sbjct: 145 VSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 199
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 112/233 (48%), Gaps = 21/233 (9%)
Query: 48 LQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGR---ID 104
L+ ++ G H + +FSPNGEW+AS+ ++IWGA++ K + +SG I
Sbjct: 16 LKFTLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGIS 70
Query: 105 DLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIA 162
D+ WS D +V+ D K + WD SG + GHS V C F P I
Sbjct: 71 DVAWSSDSNLLVSASDDKTLKI-----WDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IV 124
Query: 163 TCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK 222
+ D V ++ K + HS+ V+ V F+ DGS +S S D I+D +
Sbjct: 125 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 184
Query: 223 IGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT 275
+ L +D V V +SP+GK +L A+ D + K+WD S+ GK KT T
Sbjct: 185 LKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSK---GKCLKTYT 232
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 90/182 (49%), Gaps = 21/182 (11%)
Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII---YDGKTADKIGELSPEDGH 232
P + K + GH+ V+ V+FSP+G S S+DK I YDGK I GH
Sbjct: 12 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 65
Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW- 291
K + V+WS D +++AS DK+ K+WD+S GK KTL G + + C +
Sbjct: 66 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLK-----GHSNYVFCCNFN 117
Query: 292 -QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV 350
Q++ +V S ++ I+ K L H V+A+ N D +I+SSSYDGL
Sbjct: 118 PQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVH-FNRDGSLIVSSSYDGLCR 175
Query: 351 KW 352
W
Sbjct: 176 IW 177
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
L H AVS +++SP+ AS ++ +W + + K + H I+ +AWS +
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 77
Query: 546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGE-DACVRVW 604
++++ + S D + I+++ + T+KG H V+ F + +++ SG D VR+W
Sbjct: 78 SNLLVSASDDKTLKIWDVSSGKCLK-TLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIW 135
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 124/300 (41%), Gaps = 28/300 (9%)
Query: 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL 290
GH +V +V +SP+G+ + ++SADK K+W + GK +KT++ G+ D+
Sbjct: 22 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD---GKFEKTIS-GHKLGISDV----A 73
Query: 291 WQND--FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGL 348
W +D LV S T+ I+ + K L GH N N +I+S S+D
Sbjct: 74 WSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGH-SNYVFCCNFNPQSNLIVSGSFDES 131
Query: 349 IVKWIQGIGYGGKLQRKENSQIKC--FAAIEEEIVTSGFDN--KIWRVSLQGDQCGYANS 404
+ W G K + + F IV+S +D +IW + QC
Sbjct: 132 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA--SGQC-LKTL 188
Query: 405 IDIGSQPKDLSVALHYPELVLVSTDSGVVLL---RGAEVVSTI----NLRFPVTASAIAP 457
ID + P + +L +T + L + + T N ++ + A+
Sbjct: 189 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 248
Query: 458 DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIV 517
G + GS+D + +++++ + ++ L+ H V P ++ AS + + +
Sbjct: 249 GGKWIVSGSEDNLVYIWNLQTKEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTI 306
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 102/238 (42%), Gaps = 24/238 (10%)
Query: 34 TNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLK 93
++ +++ I D+S+ + H+ F+P I S +VRIW L
Sbjct: 85 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL- 143
Query: 94 KEFRVLSGRIDDLQWSPDGLRIVACG-DGKGKSLVRAFMWDSGTNVGE-----FDGHSRR 147
K S + + ++ DG IV+ DG L R +WD+ + G+ D +
Sbjct: 144 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG----LCR--IWDTAS--GQCLKTLIDDDNPP 195
Query: 148 VLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCV--RFSPDGSKFI- 204
V F P+ + +A ++ L ++ K ++ GH N C+ FS G K+I
Sbjct: 196 VSFVKFSPNGKYILAATLDNTL-KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 254
Query: 205 SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA--DKSAKVW 260
S S D I++ +T + + +L GH V + + P + +A+ DK+ K+W
Sbjct: 255 SGSEDNLVYIWNLQTKEIVQKL---QGHTDVVISTACHPTENIIASAALENDKTIKLW 309
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/116 (17%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 447 RFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMF 506
+ ++ A + D + + S D L+++ + + L+ H V ++P ++
Sbjct: 66 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK--TLKGHSNYVFCCNFNPQSNLI 123
Query: 507 ASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYE 562
SG + +WD + + LK + H+ ++ + ++ + S++ + S D I++
Sbjct: 124 VSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 178
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 112/233 (48%), Gaps = 21/233 (9%)
Query: 48 LQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGR---ID 104
L+ ++ G H + +FSPNGEW+AS+ ++IWGA++ K + +SG I
Sbjct: 21 LKFTLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGIS 75
Query: 105 DLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIA 162
D+ WS D +V+ D K + WD SG + GHS V C F P I
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKI-----WDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IV 129
Query: 163 TCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK 222
+ D V ++ K + HS+ V+ V F+ DGS +S S D I+D +
Sbjct: 130 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 189
Query: 223 IGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT 275
+ L +D V V +SP+GK +L A+ D + K+WD S+ GK KT T
Sbjct: 190 LKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSK---GKCLKTYT 237
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 108/228 (47%), Gaps = 26/228 (11%)
Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII---YDGKTADKIGELSPEDGH 232
P + K + GH+ V+ V+FSP+G S S+DK I YDGK I GH
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 70
Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW- 291
K + V+WS D +++AS DK+ K+WD+S GK KTL G + + C +
Sbjct: 71 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLK-----GHSNYVFCCNFN 122
Query: 292 -QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV 350
Q++ +V S ++ I+ K L H V+A+ N D +I+SSSYDGL
Sbjct: 123 PQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVH-FNRDGSLIVSSSYDGLCR 180
Query: 351 KWIQGIGYGGK-LQRKENSQIKC--FAAIEEEIVTSGFDN--KIWRVS 393
W G K L +N + F+ + I+ + DN K+W S
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 4/120 (3%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
L H AVS +++SP+ AS ++ +W + + K + H I+ +AWS +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 82
Query: 546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGE-DACVRVW 604
++++ + S D + I+++ T+KG H V+ F + +++ SG D VR+W
Sbjct: 83 SNLLVSASDDKTLKIWDVSS-GKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 124/300 (41%), Gaps = 28/300 (9%)
Query: 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL 290
GH +V +V +SP+G+ + ++SADK K+W + GK +KT++ G+ D+
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD---GKFEKTIS-GHKLGISDV----A 78
Query: 291 WQND--FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGL 348
W +D LV S T+ I+ + K L GH N N +I+S S+D
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGH-SNYVFCCNFNPQSNLIVSGSFDES 136
Query: 349 IVKWIQGIGYGGKLQRKENSQIKC--FAAIEEEIVTSGFDN--KIWRVSLQGDQCGYANS 404
+ W G K + + F IV+S +D +IW + QC
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA--SGQC-LKTL 193
Query: 405 IDIGSQPKDLSVALHYPELVLVSTDSGVVLL---RGAEVVSTI----NLRFPVTASAIAP 457
ID + P + +L +T + L + + T N ++ + A+
Sbjct: 194 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 253
Query: 458 DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIV 517
G + GS+D + +++++ + ++ L+ H V P ++ AS + + +
Sbjct: 254 GGKWIVSGSEDNLVYIWNLQTKEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTI 311
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 102/238 (42%), Gaps = 24/238 (10%)
Query: 34 TNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLK 93
++ +++ I D+S+ + H+ F+P I S +VRIW L
Sbjct: 90 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL- 148
Query: 94 KEFRVLSGRIDDLQWSPDGLRIVACG-DGKGKSLVRAFMWDSGTNVGE-----FDGHSRR 147
K S + + ++ DG IV+ DG L R +WD+ + G+ D +
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG----LCR--IWDTAS--GQCLKTLIDDDNPP 200
Query: 148 VLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCV--RFSPDGSKFI- 204
V F P+ + +A ++ L ++ K ++ GH N C+ FS G K+I
Sbjct: 201 VSFVKFSPNGKYILAATLDNTL-KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 259
Query: 205 SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA--DKSAKVW 260
S S D I++ +T + + +L GH V + + P + +A+ DK+ K+W
Sbjct: 260 SGSEDNLVYIWNLQTKEIVQKL---QGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/116 (17%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 447 RFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMF 506
+ ++ A + D + + S D L+++ + + L+ H V ++P ++
Sbjct: 71 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK--TLKGHSNYVFCCNFNPQSNLI 128
Query: 507 ASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYE 562
SG + +WD + + LK + H+ ++ + ++ + S++ + S D I++
Sbjct: 129 VSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 112/233 (48%), Gaps = 21/233 (9%)
Query: 48 LQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGR---ID 104
L+ ++ G H + +FSPNGEW+AS+ ++IWGA++ K + +SG I
Sbjct: 39 LKFTLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGIS 93
Query: 105 DLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIA 162
D+ WS D +V+ D K + WD SG + GHS V C F P I
Sbjct: 94 DVAWSSDSNLLVSASDDKTLKI-----WDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IV 147
Query: 163 TCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK 222
+ D V ++ K + HS+ V+ V F+ DGS +S S D I+D +
Sbjct: 148 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 207
Query: 223 IGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT 275
+ L +D V V +SP+GK +L A+ D + K+WD S+ GK KT T
Sbjct: 208 LKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSK---GKCLKTYT 255
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 91/187 (48%), Gaps = 21/187 (11%)
Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII---YDGKTADKIGELSPEDGH 232
P + K + GH+ V+ V+FSP+G S S+DK I YDGK I GH
Sbjct: 35 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 88
Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW- 291
K + V+WS D +++AS DK+ K+WD+S GK KTL G + + C +
Sbjct: 89 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLK-----GHSNYVFCCNFN 140
Query: 292 -QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV 350
Q++ +V S ++ I+ K L H V+A+ N D +I+SSSYDGL
Sbjct: 141 PQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVH-FNRDGSLIVSSSYDGLCR 198
Query: 351 KWIQGIG 357
W G
Sbjct: 199 IWDTASG 205
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 4/120 (3%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
L H AVS +++SP+ AS ++ +W + + K + H I+ +AWS +
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 100
Query: 546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGE-DACVRVW 604
++++ + S D + I+++ T+KG H V+ F + +++ SG D VR+W
Sbjct: 101 SNLLVSASDDKTLKIWDVSS-GKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIW 158
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 124/300 (41%), Gaps = 28/300 (9%)
Query: 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL 290
GH +V +V +SP+G+ + ++SADK K+W + GK +KT++ G+ D+
Sbjct: 45 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD---GKFEKTIS-GHKLGISDV----A 96
Query: 291 WQND--FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGL 348
W +D LV S T+ I+ + K L GH N N +I+S S+D
Sbjct: 97 WSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGH-SNYVFCCNFNPQSNLIVSGSFDES 154
Query: 349 IVKWIQGIGYGGKLQRKENSQIKC--FAAIEEEIVTSGFDN--KIWRVSLQGDQCGYANS 404
+ W G K + + F IV+S +D +IW + QC
Sbjct: 155 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA--SGQC-LKTL 211
Query: 405 IDIGSQPKDLSVALHYPELVLVSTDSGVVLL---RGAEVVSTI----NLRFPVTASAIAP 457
ID + P + +L +T + L + + T N ++ + A+
Sbjct: 212 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 271
Query: 458 DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIV 517
G + GS+D + +++++ + ++ L+ H V P ++ AS + + +
Sbjct: 272 GGKWIVSGSEDNLVYIWNLQTKEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTI 329
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 102/238 (42%), Gaps = 24/238 (10%)
Query: 34 TNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLK 93
++ +++ I D+S+ + H+ F+P I S +VRIW L
Sbjct: 108 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL- 166
Query: 94 KEFRVLSGRIDDLQWSPDGLRIVACG-DGKGKSLVRAFMWDSGTNVGE-----FDGHSRR 147
K S + + ++ DG IV+ DG L R +WD+ + G+ D +
Sbjct: 167 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG----LCR--IWDTAS--GQCLKTLIDDDNPP 218
Query: 148 VLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCV--RFSPDGSKFI- 204
V F P+ + +A ++ L ++ K ++ GH N C+ FS G K+I
Sbjct: 219 VSFVKFSPNGKYILAATLDNTL-KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 277
Query: 205 SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA--DKSAKVW 260
S S D I++ +T + + +L GH V + + P + +A+ DK+ K+W
Sbjct: 278 SGSEDNLVYIWNLQTKEIVQKL---QGHTDVVISTACHPTENIIASAALENDKTIKLW 332
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/116 (17%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 447 RFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMF 506
+ ++ A + D + + S D L+++ + + L+ H V ++P ++
Sbjct: 89 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK--TLKGHSNYVFCCNFNPQSNLI 146
Query: 507 ASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYE 562
SG + +WD + + LK + H+ ++ + ++ + S++ + S D I++
Sbjct: 147 VSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 201
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 112/233 (48%), Gaps = 21/233 (9%)
Query: 48 LQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGR---ID 104
L+ ++ G H + +FSPNGEW+AS+ ++IWGA++ K + +SG I
Sbjct: 21 LKFTLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGIS 75
Query: 105 DLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIA 162
D+ WS D +V+ D K + WD SG + GHS V C F P I
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKI-----WDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IV 129
Query: 163 TCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK 222
+ D V ++ K + HS+ V+ V F+ DGS +S S D I+D +
Sbjct: 130 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 189
Query: 223 IGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT 275
+ L +D V V +SP+GK +L A+ D + K+WD S+ GK KT T
Sbjct: 190 LKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSK---GKCLKTYT 237
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 108/228 (47%), Gaps = 26/228 (11%)
Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII---YDGKTADKIGELSPEDGH 232
P + K + GH+ V+ V+FSP+G S S+DK I YDGK I GH
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 70
Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW- 291
K + V+WS D +++AS DK+ K+WD+S GK KTL G + + C +
Sbjct: 71 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLK-----GHSNYVFCCNFN 122
Query: 292 -QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV 350
Q++ +V S ++ I+ K L H V+A+ N D +I+SSSYDGL
Sbjct: 123 PQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVH-FNRDGSLIVSSSYDGLCR 180
Query: 351 KWIQGIGYGGK-LQRKENSQIKC--FAAIEEEIVTSGFDN--KIWRVS 393
W G K L +N + F+ + I+ + DN K+W S
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 4/120 (3%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
L H AVS +++SP+ AS ++ +W + + K + H I+ +AWS +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 82
Query: 546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGE-DACVRVW 604
++++ + S D + I+++ T+KG H V+ F + +++ SG D VR+W
Sbjct: 83 SNLLVSASDDKTLKIWDVSS-GKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 124/300 (41%), Gaps = 28/300 (9%)
Query: 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL 290
GH +V +V +SP+G+ + ++SADK K+W + GK +KT++ G+ D+
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD---GKFEKTIS-GHKLGISDV----A 78
Query: 291 WQND--FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGL 348
W +D LV S T+ I+ + K L GH N N +I+S S+D
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGH-SNYVFCCNFNPQSNLIVSGSFDES 136
Query: 349 IVKWIQGIGYGGKLQRKENSQIKC--FAAIEEEIVTSGFDN--KIWRVSLQGDQCGYANS 404
+ W G K + + F IV+S +D +IW + QC
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA--SGQC-LKTL 193
Query: 405 IDIGSQPKDLSVALHYPELVLVSTDSGVVLL---RGAEVVSTI----NLRFPVTASAIAP 457
ID + P + +L +T + L + + T N ++ + A+
Sbjct: 194 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 253
Query: 458 DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIV 517
G + GS+D + +++++ + ++ L+ H V P ++ AS + + +
Sbjct: 254 GGKWIVSGSEDNLVYIWNLQTKEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTI 311
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 102/238 (42%), Gaps = 24/238 (10%)
Query: 34 TNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLK 93
++ +++ I D+S+ + H+ F+P I S +VRIW L
Sbjct: 90 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL- 148
Query: 94 KEFRVLSGRIDDLQWSPDGLRIVACG-DGKGKSLVRAFMWDSGTNVGE-----FDGHSRR 147
K S + + ++ DG IV+ DG L R +WD+ + G+ D +
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG----LCR--IWDTAS--GQCLKTLIDDDNPP 200
Query: 148 VLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCV--RFSPDGSKFI- 204
V F P+ + +A ++ L ++ K ++ GH N C+ FS G K+I
Sbjct: 201 VSFVKFSPNGKYILAATLDNTL-KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 259
Query: 205 SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA--DKSAKVW 260
S S D I++ +T + + +L GH V + + P + +A+ DK+ K+W
Sbjct: 260 SGSEDNLVYIWNLQTKEIVQKL---QGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/116 (17%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 447 RFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMF 506
+ ++ A + D + + S D L+++ + + L+ H V ++P ++
Sbjct: 71 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK--TLKGHSNYVFCCNFNPQSNLI 128
Query: 507 ASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYE 562
SG + +WD + + LK + H+ ++ + ++ + S++ + S D I++
Sbjct: 129 VSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 116/245 (47%), Gaps = 21/245 (8%)
Query: 36 GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKE 95
GR + + L+ ++ G H + +FSPNGEW+A++ ++IWGA++ K
Sbjct: 6 GRGSEFVKPNYALKFTLAG-HTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDG----KF 60
Query: 96 FRVLSGR---IDDLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLS 150
+ +SG I D+ WS D +V+ D K + WD SG + GHS V
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI-----WDVSSGKCLKTLKGHSNYVFC 115
Query: 151 CAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDK 210
C F P I + D V ++ K + HS+ V+ V F+ DGS +S S D
Sbjct: 116 CNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 211 KGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKL 270
I+D + + L +D V V +SP+GK +L A+ D + K+WD S+ GK
Sbjct: 175 LCRIWDTASGQCLKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSK---GKC 229
Query: 271 KKTLT 275
KT T
Sbjct: 230 LKTYT 234
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 90/182 (49%), Gaps = 21/182 (11%)
Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII---YDGKTADKIGELSPEDGH 232
P + K + GH+ V+ V+FSP+G + S+DK I YDGK I GH
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTIS------GH 67
Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW- 291
K + V+WS D +++AS DK+ K+WD+S GK KTL G + + C +
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLK-----GHSNYVFCCNFN 119
Query: 292 -QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV 350
Q++ +V S ++ I+ K L H V+A+ N D +I+SSSYDGL
Sbjct: 120 PQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVH-FNRDGSLIVSSSYDGLCR 177
Query: 351 KW 352
W
Sbjct: 178 IW 179
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
L H AVS +++SP+ A+ ++ +W + + K + H I+ +AWS +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 79
Query: 546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGE-DACVRVW 604
++++ + S D + I+++ + T+KG H V+ F + +++ SG D VR+W
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLK-TLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 102/238 (42%), Gaps = 24/238 (10%)
Query: 34 TNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLK 93
++ +++ I D+S+ + H+ F+P I S +VRIW L
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL- 145
Query: 94 KEFRVLSGRIDDLQWSPDGLRIVACG-DGKGKSLVRAFMWDSGTNVGE-----FDGHSRR 147
K S + + ++ DG IV+ DG L R +WD+ + G+ D +
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG----LCR--IWDTAS--GQCLKTLIDDDNPP 197
Query: 148 VLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCV--RFSPDGSKFI- 204
V F P+ + +A ++ L ++ K ++ GH N C+ FS G K+I
Sbjct: 198 VSFVKFSPNGKYILAATLDNTL-KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 205 SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA--DKSAKVW 260
S S D I++ +T + + +L GH V + + P + +A+ DK+ K+W
Sbjct: 257 SGSEDNLVYIWNLQTKEIVQKLQ---GHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 121/300 (40%), Gaps = 28/300 (9%)
Query: 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL 290
GH +V +V +SP+G+ + +SADK K+W + GK +KT++ G D
Sbjct: 24 GHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYD---GKFEKTISGHKLGISD-----VA 75
Query: 291 WQND--FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGL 348
W +D LV S T+ I+ + K L GH N N +I+S S+D
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGH-SNYVFCCNFNPQSNLIVSGSFDES 133
Query: 349 IVKWIQGIGYGGKLQRKENSQIKC--FAAIEEEIVTSGFDN--KIWRVSLQGDQCGYANS 404
+ W G K + + F IV+S +D +IW + QC
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA--SGQC-LKTL 190
Query: 405 IDIGSQPKDLSVALHYPELVLVSTDSGVVLL---RGAEVVSTI----NLRFPVTASAIAP 457
ID + P + +L +T + L + + T N ++ + A+
Sbjct: 191 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 250
Query: 458 DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIV 517
G + GS+D + +++++ + ++ L+ H V P ++ AS + + +
Sbjct: 251 GGKWIVSGSEDNLVYIWNLQTKEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTI 308
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/116 (17%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 447 RFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMF 506
+ ++ A + D + + S D L+++ + + L+ H V ++P ++
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK--TLKGHSNYVFCCNFNPQSNLI 125
Query: 507 ASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYE 562
SG + +WD + + LK + H+ ++ + ++ + S++ + S D I++
Sbjct: 126 VSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 106/225 (47%), Gaps = 20/225 (8%)
Query: 56 HAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGR---IDDLQWSPDG 112
H + +FSPNGEW+AS+ ++IWGA++ K + +SG I D+ WS D
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDS 80
Query: 113 LRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLV 170
+V+ D K + WD SG + GHS V C F P I + D V
Sbjct: 81 NLLVSASDDKTLKI-----WDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESV 134
Query: 171 NFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPED 230
++ + HS+ V+ V F+ DGS +S S D I+D + + L +D
Sbjct: 135 RIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 194
Query: 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT 275
V V +SP+GK +L A+ D + K+WD S+ GK KT T
Sbjct: 195 N--PPVSFVKFSPNGKYILAATLDNTLKLWDYSK---GKCLKTYT 234
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 107/230 (46%), Gaps = 30/230 (13%)
Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII---YDGKTADKIGELSPEDGH 232
P + + GH+ V+ V+FSP+G S S+DK I YDGK I GH
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 67
Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW- 291
K + V+WS D +++AS DK+ K+WD+S GK KTL G + + C +
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLK-----GHSNYVFCCNFN 119
Query: 292 -QNDFLVIVSLGGTISIFSANDLEKSPL--QLSGHMKNVTALTVLNIDPKVILSSSYDGL 348
Q++ +V S ++ I+ D++ L H V+A+ N D +I+SSSYDGL
Sbjct: 120 PQSNLIVSGSFDESVRIW---DVKTGMCLKTLPAHSDPVSAVH-FNRDGSLIVSSSYDGL 175
Query: 349 IVKWIQGIGYGGKLQRKENSQIKCFAAIE---EEIVTSGFDN--KIWRVS 393
W G K +++ F + I+ + DN K+W S
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
L H AVS +++SP+ AS ++ +W + + K + H I+ +AWS +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 79
Query: 546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGE-DACVRVW 604
++++ + S D + I+++ + T+KG H V+ F + +++ SG D VR+W
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLK-TLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 124/300 (41%), Gaps = 28/300 (9%)
Query: 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL 290
GH +V +V +SP+G+ + ++SADK K+W + GK +KT++ G+ D+
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD---GKFEKTIS-GHKLGISDV----A 75
Query: 291 WQND--FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGL 348
W +D LV S T+ I+ + K L GH N N +I+S S+D
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGH-SNYVFCCNFNPQSNLIVSGSFDES 133
Query: 349 IVKWIQGIGYGGKLQRKENSQIKC--FAAIEEEIVTSGFDN--KIWRVSLQGDQCGYANS 404
+ W G K + + F IV+S +D +IW + QC
Sbjct: 134 VRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA--SGQC-LKTL 190
Query: 405 IDIGSQPKDLSVALHYPELVLVSTDSGVVLL---RGAEVVSTI----NLRFPVTASAIAP 457
ID + P + +L +T + L + + T N ++ + A+
Sbjct: 191 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 250
Query: 458 DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIV 517
G + GS+D + +++++ + ++ L+ H V P ++ AS + + +
Sbjct: 251 GGKWIVSGSEDNMVYIWNLQTKEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTI 308
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 102/238 (42%), Gaps = 24/238 (10%)
Query: 34 TNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLK 93
++ +++ I D+S+ + H+ F+P I S +VRIW L
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCL- 145
Query: 94 KEFRVLSGRIDDLQWSPDGLRIVACG-DGKGKSLVRAFMWDSGTNVGE-----FDGHSRR 147
K S + + ++ DG IV+ DG L R +WD+ + G+ D +
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG----LCR--IWDTAS--GQCLKTLIDDDNPP 197
Query: 148 VLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCV--RFSPDGSKFI- 204
V F P+ + +A ++ L ++ K ++ GH N C+ FS G K+I
Sbjct: 198 VSFVKFSPNGKYILAATLDNTL-KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 205 SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA--DKSAKVW 260
S S D I++ +T + + +L GH V + + P + +A+ DK+ K+W
Sbjct: 257 SGSEDNMVYIWNLQTKEIVQKL---QGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/116 (18%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 447 RFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMF 506
+ ++ A + D + + S D L+++ + + L+ H V ++P ++
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK--TLKGHSNYVFCCNFNPQSNLI 125
Query: 507 ASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYE 562
SG + +WD V + LK + H+ ++ + ++ + S++ + S D I++
Sbjct: 126 VSGSFDESVRIWD-VKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 105/225 (46%), Gaps = 20/225 (8%)
Query: 56 HAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGR---IDDLQWSPDG 112
H + +FSPNGEW+AS+ ++IWGA++ K + +SG I D+ WS D
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDS 80
Query: 113 LRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLV 170
+V+ D K + WD SG + GHS V C F P I + D V
Sbjct: 81 NLLVSASDDKTLKI-----WDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESV 134
Query: 171 NFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPED 230
++ + HS+ V+ V F+ DGS +S S D I+D + + L +D
Sbjct: 135 RIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 194
Query: 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT 275
V V +SP+GK +L A+ D K+WD S+ GK KT T
Sbjct: 195 N--PPVSFVKFSPNGKYILAATLDNDLKLWDYSK---GKCLKTYT 234
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 107/230 (46%), Gaps = 30/230 (13%)
Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII---YDGKTADKIGELSPEDGH 232
P + + GH+ V+ V+FSP+G S S+DK I YDGK I GH
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 67
Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW- 291
K + V+WS D +++AS DK+ K+WD+S GK KTL G + + C +
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLK-----GHSNYVFCCNFN 119
Query: 292 -QNDFLVIVSLGGTISIFSANDLEKSPL--QLSGHMKNVTALTVLNIDPKVILSSSYDGL 348
Q++ +V S ++ I+ D++ L H V+A+ N D +I+SSSYDGL
Sbjct: 120 PQSNLIVSGSFDESVRIW---DVKTGMCLKTLPAHSDPVSAVH-FNRDGSLIVSSSYDGL 175
Query: 349 IVKWIQGIGYGGKLQRKENSQIKCFAAIE---EEIVTSGFDN--KIWRVS 393
W G K +++ F + I+ + DN K+W S
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYS 225
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
L H AVS +++SP+ AS ++ +W + + K + H I+ +AWS +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 79
Query: 546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGE-DACVRVW 604
++++ + S D + I+++ + T+KG H V+ F + +++ SG D VR+W
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLK-TLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 104/240 (43%), Gaps = 28/240 (11%)
Query: 34 TNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLK 93
++ +++ I D+S+ + H+ F+P I S +VRIW L
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCL- 145
Query: 94 KEFRVLSGRIDDLQWSPDGLRIVACG-DGKGKSLVRAFMWDSGTNVGE-----FDGHSRR 147
K S + + ++ DG IV+ DG L R +WD+ + G+ D +
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG----LCR--IWDTAS--GQCLKTLIDDDNPP 197
Query: 148 VLSCAFKPSRPFRI-ATCGEDF-LVNFYEGPPFKFKLSHRGHSNFVNCV--RFSPDGSKF 203
V F P+ + + AT D L ++ +G K ++ GH N C+ FS G K+
Sbjct: 198 VSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLK---TYTGHKNEKYCIFANFSVTGGKW 254
Query: 204 I-SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA--DKSAKVW 260
I S S D I++ +T + + +L GH V + + P + +A+ DK+ K+W
Sbjct: 255 IVSGSEDNMVYIWNLQTKEIVQKLQ---GHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 68/300 (22%), Positives = 126/300 (42%), Gaps = 28/300 (9%)
Query: 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL 290
GH +V +V +SP+G+ + ++SADK K+W + GK +KT++ G+ D+
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD---GKFEKTIS-GHKLGISDV----A 75
Query: 291 WQND--FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGL 348
W +D LV S T+ I+ + K L GH N N +I+S S+D
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGH-SNYVFCCNFNPQSNLIVSGSFDES 133
Query: 349 IVKWIQGIGYGGKLQRKENSQIKC--FAAIEEEIVTSGFDN--KIWRVSLQGDQCGYANS 404
+ W G K + + F IV+S +D +IW + QC
Sbjct: 134 VRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA--SGQC-LKTL 190
Query: 405 IDIGSQPKDLSVALHYPELVLVST-DSGVVL--LRGAEVVSTI----NLRFPVTASAIAP 457
ID + P + +L +T D+ + L + + T N ++ + A+
Sbjct: 191 IDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 250
Query: 458 DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIV 517
G + GS+D + +++++ + ++ L+ H V P ++ AS + + +
Sbjct: 251 GGKWIVSGSEDNMVYIWNLQTKEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTI 308
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 69/311 (22%), Positives = 130/311 (41%), Gaps = 41/311 (13%)
Query: 318 LQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAI- 376
L+GH K V+++ + + + + SSS D LI W Y GK ++ + + +
Sbjct: 20 FTLAGHTKAVSSVK-FSPNGEWLASSSADKLIKIWG---AYDGKFEKTISGHKLGISDVA 75
Query: 377 ---EEEIVTSGFDNK---IWRVS-------LQGDQCGYANSIDIGSQPKDLSVALHYPEL 423
+ ++ S D+K IW VS L+G Y + Q +L V+ + E
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQ-SNLIVSGSFDES 133
Query: 424 VLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVY-SIRGDTLT 482
V + + L+ S PV+A DGS + S DG R++ + G L
Sbjct: 134 VRIWDVKTGMCLKTLPAHSD-----PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL- 187
Query: 483 EEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAW 542
+ +++ VS +++SP+ + ++ + +WD S+ LK H C+
Sbjct: 188 -KTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWD-YSKGKCLKTYTGHKNEKYCIF- 244
Query: 543 SPNNSM-----VATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSG- 596
N S+ + +GS D V I+ + + ++G H V A ++++S
Sbjct: 245 -ANFSVTGGKWIVSGSEDNMVYIWNL-QTKEIVQKLQG-HTDVVISTACHPTENIIASAA 301
Query: 597 --EDACVRVWR 605
D +++W+
Sbjct: 302 LENDKTIKLWK 312
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 98/243 (40%), Gaps = 36/243 (14%)
Query: 38 SVIILDLSNPLQVSIYGEHAYPATVARFSPNG----EWIASADVSGTVR-IWGAHNDHVL 92
+++ L L P +Y + A + NG EWI +++ R + H D V
Sbjct: 568 NIVQLGLCEPETSEVYQQAKLQA--KQEVDNGMLYLEWINKKNITNLSRLVVRPHTDAVY 625
Query: 93 KKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCA 152
F S DG RI +CG K ++ F ++G + E H VL CA
Sbjct: 626 HACF------------SEDGQRIASCGADKT---LQVFKAETGEKLLEIKAHEDEVLCCA 670
Query: 153 FKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKG 212
F F IATC D V + + ++ HS VNC F+ + +
Sbjct: 671 FSTDDRF-IATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDC 729
Query: 213 IIYDGKTADKIGELSPED------GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDN 266
+ K+ +L+ ++ GH SV +SPD K + + SAD + K+WD + N
Sbjct: 730 FL-------KLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSAN 782
Query: 267 HGK 269
K
Sbjct: 783 ERK 785
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 119/525 (22%), Positives = 201/525 (38%), Gaps = 113/525 (21%)
Query: 28 SNSILYTNGRSVIILDL----SNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRI 83
S+ +L G S L L + +++G H RFSP+ + +AS GT+++
Sbjct: 717 SHHLLLATGSSDCFLKLWDLNQKECRNTMFG-HTNSVNHCRFSPDDKLLASCSADGTLKL 775
Query: 84 WGAHNDHV-----LKKEFRVLSGRIDDLQ-------WSPDGLRIVACGDGKGKSLVRAFM 131
W A + + +K+ F L +D++ WS DG RI+ K F+
Sbjct: 776 WDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNK------IFL 829
Query: 132 WDSGTN--VGEFD-GHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHS 188
+D T+ +GE GH + C F P + + + V + RGH
Sbjct: 830 FDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQ-YCVELWNTDSRSKVADCRGHL 888
Query: 189 NFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQV 248
++V+ V FSPDGS F++ S D+ +++ K K + +
Sbjct: 889 SWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCK---------------------NSAVM 927
Query: 249 LTASAD---KSAKVWDISEDNHGKLKKTLTPSGSGGVD---DMLVGCLWQNDFLVIVSLG 302
L D + +V ++ D+ +L+ L +G +D + V C + L ++ G
Sbjct: 928 LKQEVDVVFQENEVMVLAVDHIRRLQ--LINGRTGQIDYLTEAQVSCCCLSPHLQYIAFG 985
Query: 303 ---GTISIFSA--NDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIG 357
G I I N + +S Q H K V + D K ++SSS D I W +
Sbjct: 986 DENGAIEILELVNNRIFQSRFQ---HKKTVWHIQ-FTADEKTLISSSDDAEIQVWNWQLD 1041
Query: 358 YGGKLQRKENSQIKCFAAIEE-EIVTSGFDN--KIWRVSLQGDQCGYANSIDIGSQPKDL 414
L R +K F ++ +++ FD K+W +I G++ KD
Sbjct: 1042 KCIFL-RGHQETVKDFRLLKNSRLLSWSFDGTVKVW-------------NIITGNKEKDF 1087
Query: 415 SVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVY 474
G VL + I+ D ++ S D +++
Sbjct: 1088 VC------------HQGTVL-----------------SCDISHDATKFSSTSADKTAKIW 1118
Query: 475 SIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWD 519
S D L L H G V +S D ++ A+GD N E +W+
Sbjct: 1119 SF--DLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWN 1161
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/459 (24%), Positives = 189/459 (41%), Gaps = 71/459 (15%)
Query: 160 RIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKT 219
RIA+CG D + ++ + L + H + V C FS D + S DKK I++ T
Sbjct: 635 RIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMT 694
Query: 220 ADKIGEL-SPEDGHKGSVYAVSWSPDGKQVL--TASADKSAKVWDISEDNHGKLKKTLTP 276
GEL D H V ++ +L T S+D K+WD+ N + + T+
Sbjct: 695 ----GELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL---NQKECRNTMF- 746
Query: 277 SGSGGVDDMLVGCLWQND--FLVIVSLGGTISIFSANDL-EKSPLQLSGHMKNVTALTVL 333
G + + C + D L S GT+ ++ A E+ + + N+
Sbjct: 747 ----GHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLE----- 797
Query: 334 NIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVS 393
DP+ + +IVK G ++ ++I F +I TSG +I
Sbjct: 798 --DPQEDME-----VIVKCCSWSADGARIMVAAKNKIFLF-----DIHTSGLLGEI---- 841
Query: 394 LQGDQCGYANSI---DIGSQPKDLSVALHYPELVLVSTDS--GVVLLRGAEVVSTINLRF 448
G+ ++I D Q VAL + L +TDS V RG +L +
Sbjct: 842 ----HTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRG-------HLSW 890
Query: 449 PVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFAS 508
V +PDGS + S D +R++ + AV+ K V V+ +V + A
Sbjct: 891 -VHGVMFSPDGSSFLTSSDDQTIRLWETKK-VCKNSAVMLKQE--VDVVFQENEVMVLAV 946
Query: 509 GDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEI--DKP 566
+ R ++ R + L A+++C SP+ +A G + + I E+ ++
Sbjct: 947 DHIRRLQLINGRTGQIDYLTE-----AQVSCCCLSPHLQYIAFGDENGAIEILELVNNRI 1001
Query: 567 ASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVW 604
SR H V+ + FT DE +++SS +DA ++VW
Sbjct: 1002 FQSRF----QHKKTVWHIQFTADEKTLISSSDDAEIQVW 1036
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 118/290 (40%), Gaps = 16/290 (5%)
Query: 65 FSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGK 124
SP+ ++IA D +G + I N+ + + F+ + +Q++ D +++ D
Sbjct: 975 LSPHLQYIAFGDENGAIEILELVNNRIFQSRFQ-HKKTVWHIQFTADEKTLISSSDD--- 1030
Query: 125 SLVRAFMWDSGTNVGEFDGHSRRVLSC-AFKPSRPFRIATCGEDFLVNFYEGPPFKFKLS 183
+ ++ + W + GH V K SR + G + N G K +
Sbjct: 1031 AEIQVWNWQLDKCIF-LRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVC 1089
Query: 184 HRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSP 243
H+G ++C S D +KF S S+DK I+ + D + L GH G V ++S
Sbjct: 1090 HQG--TVLSC-DISHDATKFSSTSADKTAKIW---SFDLLLPLHELRGHNGCVRCSAFSV 1143
Query: 244 DGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGG 303
D + T + ++W++S L L+ G+ + + D +++S GG
Sbjct: 1144 DSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGG 1203
Query: 304 TISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWI 353
I ++ E S N T L +++ P + D L + +I
Sbjct: 1204 YIKWWNVVTGESS----QTFYTNGTNLKKIHVSPDFKTYVTVDNLGILYI 1249
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 95/443 (21%), Positives = 170/443 (38%), Gaps = 65/443 (14%)
Query: 108 WSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGED 167
+S DG RI +CG K ++ F ++G + + H VL CAF + IATC D
Sbjct: 623 FSQDGQRIASCGADKT---LQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY-IATCSAD 678
Query: 168 FLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELS 227
V ++ K ++ HS VNC F+ + + + + K+ +L+
Sbjct: 679 KKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL-------KLWDLN 731
Query: 228 PED------GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGK---LKKTLTPSG 278
++ GH SV +SPD + + + SAD + ++WD+ N K +K+ S
Sbjct: 732 QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSE 791
Query: 279 S--GGVDDMLVGCLWQND-FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNI 335
V+ ++ C W D +IV+ + +F D+ S L H + + + +
Sbjct: 792 DPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF---DIHTSGLLAEIHTGHHSTIQYCDF 848
Query: 336 DP----KVILSSSY-------DGLI--------VKWIQGIGYGGKLQRKENSQIKCFAAI 376
P VI S Y D + + W+ G+ F+
Sbjct: 849 SPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVM---------------FSPD 893
Query: 377 EEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLR 436
+T+ D I RV C NS + Q D+ + ++ V G+ L+
Sbjct: 894 GSSFLTASDDQTI-RVWETKKVC--KNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIA 950
Query: 437 GAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSV 496
G V+ ++P G +DG +++ + + + V H+ AV
Sbjct: 951 GKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV--GHKKAVRH 1008
Query: 497 IRYSPDVSMFASGDVNREAIVWD 519
I+++ D S + VW+
Sbjct: 1009 IQFTADGKTLISSSEDSVIQVWN 1031
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 117/523 (22%), Positives = 196/523 (37%), Gaps = 107/523 (20%)
Query: 27 KSNSILYTNGRSVIILDL----SNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVR 82
KSN +L G + L L + +++G H RFSP+ E +AS GT+R
Sbjct: 710 KSNHLLLATGSNDFFLKLWDLNQKECRNTMFG-HTNSVNHCRFSPDDELLASCSADGTLR 768
Query: 83 IWGAHNDHV-----LKKEFRVLSGRIDDLQ-------WSPDGLRIVACGDGKGKSLVRAF 130
+W + + +K+ F +D++ WS DG +I+ K
Sbjct: 769 LWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK------VL 822
Query: 131 MWD---SGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGH 187
++D SG GH + C F P + + + V + RGH
Sbjct: 823 LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQ-YCVELWNIDSRLKVADCRGH 881
Query: 188 SNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQ 247
++V+ V FSPDGS F++ S D+ +++ K K +
Sbjct: 882 LSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAI--------------------- 920
Query: 248 VLTASAD---KSAKVWDISEDNHGKLKKTLTPSGSGGVD---DMLVGCLWQNDFLVIVSL 301
VL D + + ++ DN L+ L +G +D + V C + L V+
Sbjct: 921 VLKQEIDVVFQENETMVLAVDNIRGLQ--LIAGKTGQIDYLPEAQVSCCCLSPHLEYVAF 978
Query: 302 GGTISIFSANDLEKSPLQLS--GHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYG 359
G +L + + S GH K V + D K ++SSS D +I W G
Sbjct: 979 GDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQ-FTADGKTLISSSEDSVIQVWNWQTGDY 1037
Query: 360 GKLQRKENSQIKCFAAIEE-EIVTSGFDN--KIWRVSLQGDQCGYANSIDIGSQPKDLSV 416
LQ + + +K F +++ +++ FD K+W V G +D +
Sbjct: 1038 VFLQAHQET-VKDFRLLQDSRLLSWSFDGTVKVWNVI-------------TGRIERDFTC 1083
Query: 417 ALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSI 476
G VL + AI+ D ++ S D +++S
Sbjct: 1084 ------------HQGTVL-----------------SCAISSDATKFSSTSADKTAKIWSF 1114
Query: 477 RGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWD 519
D L+ L+ H G V +S D + A+GD N E +W+
Sbjct: 1115 --DLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 105/458 (22%), Positives = 186/458 (40%), Gaps = 69/458 (15%)
Query: 160 RIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKT 219
RIA+CG D + ++ + L + H + V C FS D S + S+DKK I+D T
Sbjct: 629 RIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688
Query: 220 ADKIGELSPEDGHKGSVYAVSWSPDGKQVL--TASADKSAKVWDISEDNHGKLKKTLTPS 277
+ D H V ++ +L T S D K+WD+ N + + T+
Sbjct: 689 GKLV---HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL---NQKECRNTMF-- 740
Query: 278 GSGGVDDMLVGCLWQND--FLVIVSLGGTISIF---SANDLEKSPLQLSGHMKNVTALTV 332
G + + C + D L S GT+ ++ SAN E+ + NV +
Sbjct: 741 ---GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN--ERKSI-------NVKRFFL 788
Query: 333 LNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRV 392
+ DP + +IVK G K+ +++ F +I TSG +I
Sbjct: 789 SSEDPPEDVE-----VIVKCCSWSADGDKIIVAAKNKVLLF-----DIHTSGLLAEI--- 835
Query: 393 SLQGDQCGYANSIDIGS-QPKD----LSVALHYPELVLVSTDSGVVLLRGAEVVSTINLR 447
G+ ++I P D ++++ + EL + + V RG +L
Sbjct: 836 -----HTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRG-------HLS 883
Query: 448 FPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFA 507
+ V +PDGS + S D +RV+ + VL++ + V+ + + A
Sbjct: 884 W-VHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQE---IDVVFQENETMVLA 939
Query: 508 SGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPA 567
++ ++ + + L A+++C SP+ VA G D + I E+ P
Sbjct: 940 VDNIRGLQLIAGKTGQIDYLPE-----AQVSCCCLSPHLEYVAFGDEDGAIKIIEL--PN 992
Query: 568 SSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVW 604
+ + H V + FT D +++SS ED+ ++VW
Sbjct: 993 NRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW 1030
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 181 KLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVS 240
+L R H++ V FS DG + S +DK ++ +T +K+ ++ H+ V +
Sbjct: 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK---AHEDEVLCCA 664
Query: 241 WSPDGKQVLTASADKSAKVWD 261
+S D + T SADK K+WD
Sbjct: 665 FSSDDSYIATCSADKKVKIWD 685
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 8/143 (5%)
Query: 469 GKLRVYSIRGDTLTE--EAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVK 526
G+L + I T+ V+ H AV +S D AS ++ V+ + E K
Sbjct: 591 GRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE-K 649
Query: 527 LKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAF 586
L ++ H + C A+S ++S +AT S D V I+ D + H V F
Sbjct: 650 LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW--DSATGKLVHTYDEHSEQVNCCHF 707
Query: 587 TDE--HSVVSSG-EDACVRVWRL 606
T++ H ++++G D +++W L
Sbjct: 708 TNKSNHLLLATGSNDFFLKLWDL 730
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 466 SQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVW--DRVSR 523
S DG ++V+++ + + H+G V S D + F+S ++ A +W D +S
Sbjct: 1062 SFDGTVKVWNVITGRIERDFTC--HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP 1119
Query: 524 EVKLKNMLYHTARINCLAWSPNNSMVATG 552
+LK H + C A+S + ++ATG
Sbjct: 1120 LHELKG---HNGCVRCSAFSLDGILLATG 1145
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 95/443 (21%), Positives = 170/443 (38%), Gaps = 65/443 (14%)
Query: 108 WSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGED 167
+S DG RI +CG K ++ F ++G + + H VL CAF + IATC D
Sbjct: 630 FSQDGQRIASCGADKT---LQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY-IATCSAD 685
Query: 168 FLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELS 227
V ++ K ++ HS VNC F+ + + + + K+ +L+
Sbjct: 686 KKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL-------KLWDLN 738
Query: 228 PED------GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGK---LKKTLTPSG 278
++ GH SV +SPD + + + SAD + ++WD+ N K +K+ S
Sbjct: 739 QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSE 798
Query: 279 S--GGVDDMLVGCLWQND-FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNI 335
V+ ++ C W D +IV+ + +F D+ S L H + + + +
Sbjct: 799 DPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF---DIHTSGLLAEIHTGHHSTIQYCDF 855
Query: 336 DP----KVILSSSY-------DGLI--------VKWIQGIGYGGKLQRKENSQIKCFAAI 376
P VI S Y D + + W+ G+ F+
Sbjct: 856 SPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGV---------------MFSPD 900
Query: 377 EEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLR 436
+T+ D I RV C NS + Q D+ + ++ V G+ L+
Sbjct: 901 GSSFLTASDDQTI-RVWETKKVC--KNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIA 957
Query: 437 GAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSV 496
G V+ ++P G +DG +++ + + + V H+ AV
Sbjct: 958 GKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV--GHKKAVRH 1015
Query: 497 IRYSPDVSMFASGDVNREAIVWD 519
I+++ D S + VW+
Sbjct: 1016 IQFTADGKTLISSSEDSVIQVWN 1038
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 117/523 (22%), Positives = 196/523 (37%), Gaps = 107/523 (20%)
Query: 27 KSNSILYTNGRSVIILDL----SNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVR 82
KSN +L G + L L + +++G H RFSP+ E +AS GT+R
Sbjct: 717 KSNHLLLATGSNDFFLKLWDLNQKECRNTMFG-HTNSVNHCRFSPDDELLASCSADGTLR 775
Query: 83 IWGAHNDHV-----LKKEFRVLSGRIDDLQ-------WSPDGLRIVACGDGKGKSLVRAF 130
+W + + +K+ F +D++ WS DG +I+ K
Sbjct: 776 LWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK------VL 829
Query: 131 MWD---SGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGH 187
++D SG GH + C F P + + + V + RGH
Sbjct: 830 LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQ-YCVELWNIDSRLKVADCRGH 888
Query: 188 SNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQ 247
++V+ V FSPDGS F++ S D+ +++ K K +
Sbjct: 889 LSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAI--------------------- 927
Query: 248 VLTASAD---KSAKVWDISEDNHGKLKKTLTPSGSGGVD---DMLVGCLWQNDFLVIVSL 301
VL D + + ++ DN L+ L +G +D + V C + L V+
Sbjct: 928 VLKQEIDVVFQENETMVLAVDNIRGLQ--LIAGKTGQIDYLPEAQVSCCCLSPHLEYVAF 985
Query: 302 GGTISIFSANDLEKSPLQLS--GHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYG 359
G +L + + S GH K V + D K ++SSS D +I W G
Sbjct: 986 GDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQ-FTADGKTLISSSEDSVIQVWNWQTGDY 1044
Query: 360 GKLQRKENSQIKCFAAIEE-EIVTSGFDN--KIWRVSLQGDQCGYANSIDIGSQPKDLSV 416
LQ + + +K F +++ +++ FD K+W V G +D +
Sbjct: 1045 VFLQAHQET-VKDFRLLQDSRLLSWSFDGTVKVWNVI-------------TGRIERDFTC 1090
Query: 417 ALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSI 476
G VL + AI+ D ++ S D +++S
Sbjct: 1091 ------------HQGTVL-----------------SCAISSDATKFSSTSADKTAKIWSF 1121
Query: 477 RGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWD 519
D L+ L+ H G V +S D + A+GD N E +W+
Sbjct: 1122 --DLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1162
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 105/458 (22%), Positives = 186/458 (40%), Gaps = 69/458 (15%)
Query: 160 RIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKT 219
RIA+CG D + ++ + L + H + V C FS D S + S+DKK I+D T
Sbjct: 636 RIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 695
Query: 220 ADKIGELSPEDGHKGSVYAVSWSPDGKQVL--TASADKSAKVWDISEDNHGKLKKTLTPS 277
+ D H V ++ +L T S D K+WD+ N + + T+
Sbjct: 696 GKLV---HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL---NQKECRNTMF-- 747
Query: 278 GSGGVDDMLVGCLWQND--FLVIVSLGGTISIF---SANDLEKSPLQLSGHMKNVTALTV 332
G + + C + D L S GT+ ++ SAN E+ + NV +
Sbjct: 748 ---GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN--ERKSI-------NVKRFFL 795
Query: 333 LNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRV 392
+ DP + +IVK G K+ +++ F +I TSG +I
Sbjct: 796 SSEDPPEDVE-----VIVKCCSWSADGDKIIVAAKNKVLLF-----DIHTSGLLAEI--- 842
Query: 393 SLQGDQCGYANSIDIGS-QPKD----LSVALHYPELVLVSTDSGVVLLRGAEVVSTINLR 447
G+ ++I P D ++++ + EL + + V RG +L
Sbjct: 843 -----HTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRG-------HLS 890
Query: 448 FPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFA 507
+ V +PDGS + S D +RV+ + VL++ + V+ + + A
Sbjct: 891 W-VHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQE---IDVVFQENETMVLA 946
Query: 508 SGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPA 567
++ ++ + + L A+++C SP+ VA G D + I E+ P
Sbjct: 947 VDNIRGLQLIAGKTGQIDYLPE-----AQVSCCCLSPHLEYVAFGDEDGAIKIIEL--PN 999
Query: 568 SSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVW 604
+ + H V + FT D +++SS ED+ ++VW
Sbjct: 1000 NRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW 1037
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 181 KLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVS 240
+L R H++ V FS DG + S +DK ++ +T +K+ ++ H+ V +
Sbjct: 615 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK---AHEDEVLCCA 671
Query: 241 WSPDGKQVLTASADKSAKVWD 261
+S D + T SADK K+WD
Sbjct: 672 FSSDDSYIATCSADKKVKIWD 692
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 8/143 (5%)
Query: 469 GKLRVYSIRGDTLTE--EAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVK 526
G+L + I T+ V+ H AV +S D AS ++ V+ + E K
Sbjct: 598 GRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE-K 656
Query: 527 LKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAF 586
L ++ H + C A+S ++S +AT S D V I+ D + H V F
Sbjct: 657 LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW--DSATGKLVHTYDEHSEQVNCCHF 714
Query: 587 TDE--HSVVSSG-EDACVRVWRL 606
T++ H ++++G D +++W L
Sbjct: 715 TNKSNHLLLATGSNDFFLKLWDL 737
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 466 SQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVW--DRVSR 523
S DG ++V+++ + + H+G V S D + F+S ++ A +W D +S
Sbjct: 1069 SFDGTVKVWNVITGRIERDFTC--HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP 1126
Query: 524 EVKLKNMLYHTARINCLAWSPNNSMVATG 552
+LK H + C A+S + ++ATG
Sbjct: 1127 LHELKG---HNGCVRCSAFSLDGILLATG 1152
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 117/272 (43%), Gaps = 21/272 (7%)
Query: 48 LQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDH----VLKKEFRVLSGRI 103
L+ ++ G + + +A + I SA T+ +W D + ++ R S +
Sbjct: 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 89
Query: 104 DDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIAT 163
D+ S DG ++ G +R + +GT F GH++ VLS AF S +I +
Sbjct: 90 SDVVISSDGQFALS---GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS-SDNRQIVS 145
Query: 164 CGEDFLVNFYEGPPF-KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK 222
D + + K+ + HS +V+CVRFSP+ S I VS ++ A+
Sbjct: 146 GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN- 204
Query: 223 IGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGV 282
+ GH G + V+ SPDG + D A +WD++E H L G +
Sbjct: 205 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH------LYTLDGGDI 258
Query: 283 DDMLVGCLWQNDFLVIVSLGGTISIFSANDLE 314
+ L C N + + + G +I I+ DLE
Sbjct: 259 INAL--CFSPNRYWLCAATGPSIKIW---DLE 285
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 9/161 (5%)
Query: 450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASG 509
V+ I+ DG A+ GS DG LR++ + T T V H V + +S D SG
Sbjct: 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV--GHTKDVLSVAFSSDNRQIVSG 146
Query: 510 DVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN--NSMVATGSLDTCVIIYEIDKPA 567
++ +W+ + H+ ++C+ +SPN N ++ + D V ++ + A
Sbjct: 147 SRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL---A 203
Query: 568 SSRM-TIKGAHLGGVYGLAFTDEHSVVSS-GEDACVRVWRL 606
+ ++ T H G + + + + S+ +S G+D +W L
Sbjct: 204 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 244
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 141/345 (40%), Gaps = 55/345 (15%)
Query: 299 VSLGGTISIFSANDLEKSPLQ--LSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGI 356
V LG F + E+ L+ L GH VT + P +ILS+S D I+ W
Sbjct: 11 VDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMW---- 66
Query: 357 GYGGKLQRKENS------QIKCFAAIEEEIVTSG---------FDN--KIWRVSLQGDQC 399
KL R E + ++ + ++V S +D ++W ++
Sbjct: 67 ----KLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLT-----T 117
Query: 400 GYANSIDIGSQPKDLSVALHYP--ELVLVSTDSGVVLLRGAEV----VSTINLRFPVTAS 453
G +G LSVA ++V S D + L V V + V+
Sbjct: 118 GTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCV 177
Query: 454 AIAPDGSEAIIGS--QDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDV 511
+P+ S II S D ++V+++ L + H G ++ + SPD S+ ASG
Sbjct: 178 RFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI--GHTGYLNTVTVSPDGSLCASGGK 235
Query: 512 NREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMV--ATG------SLDTCVIIYEI 563
+ +A++WD E K L IN L +SPN + ATG L+ +I+ E+
Sbjct: 236 DGQAMLWDL--NEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDEL 293
Query: 564 DKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRLT 607
+ S T A LA++ D ++ + D VRVW++T
Sbjct: 294 KQEVIS--TSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 117/272 (43%), Gaps = 21/272 (7%)
Query: 48 LQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDH----VLKKEFRVLSGRI 103
L+ ++ G + + +A + I SA T+ +W D + ++ R S +
Sbjct: 7 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 66
Query: 104 DDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIAT 163
D+ S DG ++ G +R + +GT F GH++ VLS AF S +I +
Sbjct: 67 SDVVISSDGQFALS---GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS-SDNRQIVS 122
Query: 164 CGEDFLVNFYEGPPF-KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK 222
D + + K+ + HS +V+CVRFSP+ S I VS ++ A+
Sbjct: 123 GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN- 181
Query: 223 IGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGV 282
+ GH G + V+ SPDG + D A +WD++E H L G +
Sbjct: 182 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH------LYTLDGGDI 235
Query: 283 DDMLVGCLWQNDFLVIVSLGGTISIFSANDLE 314
+ L C N + + + G +I I+ DLE
Sbjct: 236 INAL--CFSPNRYWLCAATGPSIKIW---DLE 262
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 9/161 (5%)
Query: 450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASG 509
V+ I+ DG A+ GS DG LR++ + T T V H V + +S D SG
Sbjct: 66 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV--GHTKDVLSVAFSSDNRQIVSG 123
Query: 510 DVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN--NSMVATGSLDTCVIIYEIDKPA 567
++ +W+ + H+ ++C+ +SPN N ++ + D V ++ + A
Sbjct: 124 SRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL---A 180
Query: 568 SSRM-TIKGAHLGGVYGLAFTDEHSVVSS-GEDACVRVWRL 606
+ ++ T H G + + + + S+ +S G+D +W L
Sbjct: 181 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 221
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 17/169 (10%)
Query: 450 VTASAIAPDGSEAIIGS--QDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFA 507
V+ +P+ S II S D ++V+++ L + H G ++ + SPD S+ A
Sbjct: 151 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI--GHTGYLNTVTVSPDGSLCA 208
Query: 508 SGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMV--ATG------SLDTCVI 559
SG + +A++WD E K L IN L +SPN + ATG L+ +I
Sbjct: 209 SGGKDGQAMLWDL--NEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKII 266
Query: 560 IYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRLT 607
+ E+ + S T A LA++ D ++ + D VRVW++T
Sbjct: 267 VDELKQEVIS--TSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 313
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 126/315 (40%), Gaps = 70/315 (22%)
Query: 2 PQLAETYTCVPSTERGRGILISG-HPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPA 60
PQ ET T V ST R + +L G +P +S + G L+ G A+ +
Sbjct: 22 PQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLE----------GHSAFVS 71
Query: 61 TVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGD 120
VA S NG + SA ++R+W N K F + + + +SPD +IV+
Sbjct: 72 DVA-LSNNGNFAVSASWDHSLRLWNLQNGQCQYK-FLGHTKDVLSVAFSPDNRQIVS--G 127
Query: 121 GKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPS--RPFRIATCGEDFLVNFYEGPPF 178
G+ +L + + H+ V F PS P I + G D LV ++
Sbjct: 128 GRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPV-IVSGGWDNLVKVWDLATG 186
Query: 179 KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGI------------------------- 213
+ +GH+N+V V SPDGS + SSDK G+
Sbjct: 187 RLVTDLKGHTNYVTSVTVSPDGS--LCASSDKDGVARLWDLTKGEALSEMAAGAPINQIC 244
Query: 214 -----------------IYDGKTADKIGELSPEDGHKGS------VYAVSWSPDGKQVLT 250
I+D + D I EL+PE H+GS +++WS DG + +
Sbjct: 245 FSPNRYWMCAATEKGIRIFDLENKDIIVELAPE--HQGSKKIVPECVSIAWSADGSTLYS 302
Query: 251 ASADKSAKVWDISED 265
D +VW +SE+
Sbjct: 303 GYTDNVIRVWGVSEN 317
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 103/230 (44%), Gaps = 29/230 (12%)
Query: 139 GEFDGHSRRV--LSCAFKPSRPFRIATCGED-FLVNFYEGP-----PFKFKLSHR---GH 187
G+ GH V L+C P ++ + D L+++ P + L R GH
Sbjct: 7 GQLTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGH 66
Query: 188 SNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQ 247
S FV+ V S +G+ +S S D +++ + + GH V +V++SPD +Q
Sbjct: 67 SAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFL---GHTKDVLSVAFSPDNRQ 123
Query: 248 VLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQN---DFLVIVSLGGT 304
+++ D + +VW++ G+ TL S G V C+ + D VIVS GG
Sbjct: 124 IVSGGRDNALRVWNVK----GECMHTL----SRGAHTDWVSCVRFSPSLDAPVIVS-GGW 174
Query: 305 ISIFSANDLEKSPL--QLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKW 352
++ DL L L GH VT++TV + D + SS DG+ W
Sbjct: 175 DNLVKVWDLATGRLVTDLKGHTNYVTSVTV-SPDGSLCASSDKDGVARLW 223
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 10/121 (8%)
Query: 450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGD---TLTEEAVLEKHRGAVSVIRYSP--DVS 504
V + A +PD + + G +D LRV++++G+ TL+ A H VS +R+SP D
Sbjct: 112 VLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGA----HTDWVSCVRFSPSLDAP 167
Query: 505 MFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEID 564
+ SG + VWD + + + ++ HT + + SP+ S+ A+ D ++++
Sbjct: 168 VIVSGGWDNLVKVWDLATGRL-VTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLT 226
Query: 565 K 565
K
Sbjct: 227 K 227
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Query: 487 LEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNN 546
LE H VS + S + + S + +W+ + + + K L HT + +A+SP+N
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYK-FLGHTKDVLSVAFSPDN 121
Query: 547 SMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT---DEHSVVSSGEDACVRV 603
+ +G D + ++ + ++ +GAH V + F+ D +VS G D V+V
Sbjct: 122 RQIVSGGRDNALRVWNVKGECMHTLS-RGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKV 180
Query: 604 WRL 606
W L
Sbjct: 181 WDL 183
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 95/192 (49%), Gaps = 12/192 (6%)
Query: 73 ASADVSGTVRIWGAHNDHVLKKEFRVLSGRID--DLQWSPDGLRIVACGDGKGKSLVRAF 130
AS+ + +R+W N +K + +G +D L +SPD + +A G GK V F
Sbjct: 96 ASSSLDAHIRLWDLENGKQIKS---IDAGPVDAWTLAFSPDS-QYLATGTHVGK--VNIF 149
Query: 131 MWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNF 190
+SG D + +LS A+ P + +A+ D ++N ++ K + GH+
Sbjct: 150 GVESGKKEYSLDTRGKFILSIAYSPDGKY-LASGAIDGIINIFDIATGKLLHTLEGHAMP 208
Query: 191 VNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLT 250
+ + FSPD ++ S D IYD + A+ G LS GH V V++ PD ++
Sbjct: 209 IRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS---GHASWVLNVAFCPDDTHFVS 265
Query: 251 ASADKSAKVWDI 262
+S+DKS KVWD+
Sbjct: 266 SSSDKSVKVWDV 277
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 104/223 (46%), Gaps = 12/223 (5%)
Query: 41 ILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRV-L 99
+ DL N Q+ A FSP+ +++A+ G V I+G + KKE+ +
Sbjct: 106 LWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG---KKEYSLDT 162
Query: 100 SGR-IDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRP 158
G+ I + +SPDG + +A G G ++ F +G + +GH+ + S F P
Sbjct: 163 RGKFILSIAYSPDG-KYLASGAIDG--IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ 219
Query: 159 FRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGK 218
+ T +D + Y+ + GH+++V V F PD + F+S SSDK ++D
Sbjct: 220 L-LVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG 278
Query: 219 TADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWD 261
T + H+ V+ V ++ +G ++++ D+ ++D
Sbjct: 279 TRTCVHTFFD---HQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 94/225 (41%), Gaps = 35/225 (15%)
Query: 68 NGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSL- 126
N E + + + V++W ++ + DLQWS +G ++ +L
Sbjct: 47 NSETVVTGSLDDLVKVWKWRDERL-------------DLQWSLEGHQLGVVSVDISHTLP 93
Query: 127 ----------VRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFY--E 174
+R + ++G + D + AF P + +AT VN + E
Sbjct: 94 IAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY-LATGTHVGKVNIFGVE 152
Query: 175 GPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKG 234
++ L RG F+ + +SPDG S + D I+D T + L +GH
Sbjct: 153 SGKKEYSLDTRG--KFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL---EGHAM 207
Query: 235 SVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGS 279
+ ++++SPD + ++TAS D K++D+ H L TL+ S
Sbjct: 208 PIRSLTFSPDSQLLVTASDDGYIKIYDV---QHANLAGTLSGHAS 249
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 107/234 (45%), Gaps = 32/234 (13%)
Query: 364 RKENSQIKCFAAIEEEIVTSGFDN--KIW-----RVSLQGDQCGYANSIDIGSQPKDLSV 416
+KENS E +VT D+ K+W R+ LQ G+ +G D+S
Sbjct: 44 KKENS---------ETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQ----LGVVSVDISH 90
Query: 417 ALHYPELVLVSTDSGVVL--LRGAEVVSTINLRFPVTASAIA--PDGSEAIIGSQDGKLR 472
L P S D+ + L L + + +I+ PV A +A PD G+ GK+
Sbjct: 91 TL--PIAASSSLDAHIRLWDLENGKQIKSIDAG-PVDAWTLAFSPDSQYLATGTHVGKVN 147
Query: 473 VYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLY 532
++ + ++ +E L+ + I YSPD ASG ++ ++D + ++ L +
Sbjct: 148 IFGV--ESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKL-LHTLEG 204
Query: 533 HTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAF 586
H I L +SP++ ++ T S D + IY++ + A+ T+ G H V +AF
Sbjct: 205 HAMPIRSLTFSPDSQLLVTASDDGYIKIYDV-QHANLAGTLSG-HASWVLNVAF 256
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 3/115 (2%)
Query: 448 FPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFA 507
P+ + +PD + S DG +++Y ++ L L H V + + PD + F
Sbjct: 207 MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA--GTLSGHASWVLNVAFCPDDTHFV 264
Query: 508 SGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYE 562
S ++ VWD +R + H ++ + ++ N S + + D + IY+
Sbjct: 265 SSSSDKSVKVWDVGTRTC-VHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 93/210 (44%), Gaps = 29/210 (13%)
Query: 65 FSPNGEWIASADVSGTVRIWGAHNDHVLKK----EFRVLSGR-IDDLQWSPDGLRIVACG 119
F P W+ + SG V IW ++ E V +G+ I W IV
Sbjct: 21 FHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWI-----IVGSD 75
Query: 120 DGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGP-PF 178
D + +R F +++G V +F+ H + S A P++P+ + + +D V + +
Sbjct: 76 DFR----IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNW 130
Query: 179 KFKLSHRGHSNFVNCVRFSP-DGSKFISVSSDKKGIIYDGKTADKIGELSPE----DGHK 233
+ + GH +FV CV F+P D S F S D+ ++ +G+ +P G +
Sbjct: 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW------SLGQSTPNFTLTTGQE 184
Query: 234 GSVYAVSWS--PDGKQVLTASADKSAKVWD 261
V V + PD ++TAS D + K+WD
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWD 214
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 108/275 (39%), Gaps = 35/275 (12%)
Query: 14 TERGRGILISGHPKSNSILYT--NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEW 71
++R +GI HP +L T +GR V I + ++V P +F W
Sbjct: 13 SDRVKGI--DFHPTEPWVLTTLYSGR-VEIWNYETQVEVRSIQVTETPVRAGKFIARKNW 69
Query: 72 IASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSL----- 126
I +R++ + ++ D + PD +R +A K L
Sbjct: 70 IIVGSDDFRIRVFNYNTGE-----------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDD 118
Query: 127 --VRAFMWDSGTNVGE-FDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYE----GPPFK 179
V+ + W++ + + F+GH V+ AF P P A+ D V + P F
Sbjct: 119 LTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT 178
Query: 180 FKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAV 239
N+V+ PD I+ S D I+D +T + L +GH +V
Sbjct: 179 LTTGQERGVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATL---EGHMSNVSFA 234
Query: 240 SWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTL 274
+ P +++ S D + K+W+ S K++KTL
Sbjct: 235 VFHPTLPIIISGSEDGTLKIWNSST---YKVEKTL 266
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 73/177 (41%), Gaps = 14/177 (7%)
Query: 433 VLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAV--LEKH 490
V +R +V T PV A + I+GS D ++RV++ T E V E H
Sbjct: 46 VEVRSIQVTET-----PVRAGKFIARKNWIIVGSDDFRIRVFNYN----TGEKVVDFEAH 96
Query: 491 RGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNN-SMV 549
+ I P SG + +W+ + + H + C+A++P + S
Sbjct: 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF 156
Query: 550 ATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVY--GLAFTDEHSVVSSGEDACVRVW 604
A+G LD V ++ + + + G G Y D+ ++++ +D +++W
Sbjct: 157 ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 7/155 (4%)
Query: 454 AIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSP-DVSMFASGDVN 512
A+ P + GS D +++++ + E+ E H V + ++P D S FASG ++
Sbjct: 104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-FEGHEHFVMCVAFNPKDPSTFASGCLD 162
Query: 513 REAIVWDRVSREVKLKNMLYHTARINCLAWS--PNNSMVATGSLDTCVIIYEIDKPASSR 570
R VW +N + + P+ + T S D + I++ + S
Sbjct: 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY-QTKSCV 221
Query: 571 MTIKGAHLGGVYGLAFTDEHSVVSSG-EDACVRVW 604
T++G H+ V F ++ SG ED +++W
Sbjct: 222 ATLEG-HMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 115/284 (40%), Gaps = 66/284 (23%)
Query: 65 FSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDD---LQWSPDGLRIVACGDG 121
FSP+G+++A+ +RIW N +K +L G D L + P G ++V+ G
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDIEN----RKIVMILQGHEQDIYSLDYFPSGDKLVS---G 183
Query: 122 KGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFK 181
G VR +WD R C ++ +G
Sbjct: 184 SGDRTVR--IWD-------------------------LRTGQCS--LTLSIEDG------ 208
Query: 182 LSHRGHSNFVNCVRFSPDGSKFISVSS-DKKGIIYDGKTADKIGELSPED----GHKGSV 236
V V SP K+I+ S D+ ++D +T + L E+ GHK SV
Sbjct: 209 ---------VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV 259
Query: 237 YAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGS------GGVDDMLVGCL 290
Y+V ++ DG+ V++ S D+S K+W++ N+ KT SG+ G D +L
Sbjct: 260 YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN-SGTCEVTYIGHKDFVLSVAT 318
Query: 291 WQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLN 334
QND ++ +F L L GH +V ++ V N
Sbjct: 319 TQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 362
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 13/165 (7%)
Query: 450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASG 509
+ + +PDG G++D +R++ I + +L+ H + + Y P SG
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV--MILQGHEQDIYSLDYFPSGDKLVSG 183
Query: 510 DVNREAIVWDRVSREVKLKNMLYHTARINCLAWSP-NNSMVATGSLDTCVIIYE------ 562
+R +WD + + L L + +A SP + +A GSLD V +++
Sbjct: 184 SGDRTVRIWDLRTGQCSL--TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 241
Query: 563 IDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRL 606
+++ S + G H VY + FT D SVVS D V++W L
Sbjct: 242 VERLDSENESGTG-HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 285
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 16/91 (17%)
Query: 187 HSNFVNCVRFSPDGSKFISVSSDKKGIIY---DGKTADKIGELS-----PEDGHKGS--- 235
H++ V CV+FS DG ++++ +K +Y DG ++ + S PE+ + S
Sbjct: 63 HTSVVCCVKFSNDG-EYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 236 ----VYAVSWSPDGKQVLTASADKSAKVWDI 262
+ +V +SPDGK + T + D+ ++WDI
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDI 152
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 100/258 (38%), Gaps = 51/258 (19%)
Query: 37 RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEF 96
R + I D+ N V I H + P+G+ + S TVRIW L+
Sbjct: 145 RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD------LRTGQ 198
Query: 97 RVLSGRIDDLQWSPDGLRIVACGDGKGK-----SLVRAF-MWDSGTN--VGEFD------ 142
L+ I+ DG+ VA G GK SL RA +WDS T V D
Sbjct: 199 CSLTLSIE------DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESG 252
Query: 143 -GHSRRVLSCAFKPSRPFRIATCGE-DFLVNFYEGPPFKFK------------LSHRGHS 188
GH V S F +R + G D V + K +++ GH
Sbjct: 253 TGHKDSVYSVVF--TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK 310
Query: 189 NFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAV------SWS 242
+FV V + + +S S D+ + +D K+ + + L GH+ SV +V S
Sbjct: 311 DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ---GHRNSVISVAVANGSSLG 367
Query: 243 PDGKQVLTASADKSAKVW 260
P+ T S D A++W
Sbjct: 368 PEYNVFATGSGDCKARIW 385
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 29/210 (13%)
Query: 65 FSPNGEWIASADVSGTVRIWGAHNDHVLKK----EFRVLSGR-IDDLQWSPDGLRIVACG 119
F P W+ + SG V +W ++ E V +G+ I W IV
Sbjct: 21 FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWI-----IVGSD 75
Query: 120 DGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGP-PF 178
D + +R F +++G V +F+ H + S A P++P+ + + +D V + +
Sbjct: 76 DFR----IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNW 130
Query: 179 KFKLSHRGHSNFVNCVRFSP-DGSKFISVSSDKKGIIYDGKTADKIGELSPE----DGHK 233
+ + GH +FV CV F+P D S F S D+ ++ +G+ +P G +
Sbjct: 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW------SLGQSTPNFTLTTGQE 184
Query: 234 GSVYAVSWS--PDGKQVLTASADKSAKVWD 261
V V + PD ++TAS D + K+WD
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWD 214
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 108/275 (39%), Gaps = 35/275 (12%)
Query: 14 TERGRGILISGHPKSNSILYT--NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEW 71
++R +GI HP +L T +GR V + + ++V P +F W
Sbjct: 13 SDRVKGI--DFHPTEPWVLTTLYSGR-VELWNYETQVEVRSIQVTETPVRAGKFIARKNW 69
Query: 72 IASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSL----- 126
I +R++ + ++ D + PD +R +A K L
Sbjct: 70 IIVGSDDFRIRVFNYNTGE-----------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDD 118
Query: 127 --VRAFMWDSGTNVGE-FDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYE----GPPFK 179
V+ + W++ + + F+GH V+ AF P P A+ D V + P F
Sbjct: 119 LTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT 178
Query: 180 FKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAV 239
N+V+ PD I+ S D I+D +T + L +GH +V
Sbjct: 179 LTTGQERGVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATL---EGHMSNVSFA 234
Query: 240 SWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTL 274
+ P +++ S D + K+W+ S K++KTL
Sbjct: 235 VFHPTLPIIISGSEDGTLKIWNSST---YKVEKTL 266
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 73/175 (41%), Gaps = 10/175 (5%)
Query: 433 VLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRG 492
V +R +V T PV A + I+GS D ++RV++ +T + E H
Sbjct: 46 VEVRSIQVTET-----PVRAGKFIARKNWIIVGSDDFRIRVFNY--NTGEKVVDFEAHPD 98
Query: 493 AVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNN-SMVAT 551
+ I P SG + +W+ + + H + C+A++P + S A+
Sbjct: 99 YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158
Query: 552 GSLDTCVIIYEIDKPASSRMTIKGAHLGGVY--GLAFTDEHSVVSSGEDACVRVW 604
G LD V ++ + + + G G Y D+ ++++ +D +++W
Sbjct: 159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 7/155 (4%)
Query: 454 AIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSP-DVSMFASGDVN 512
A+ P + GS D +++++ + E+ E H V + ++P D S FASG ++
Sbjct: 104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-FEGHEHFVMCVAFNPKDPSTFASGCLD 162
Query: 513 REAIVWDRVSREVKLKNMLYHTARINCLAWS--PNNSMVATGSLDTCVIIYEIDKPASSR 570
R VW +N + + P+ + T S D + I++ + S
Sbjct: 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY-QTKSCV 221
Query: 571 MTIKGAHLGGVYGLAFTDEHSVVSSG-EDACVRVW 604
T++G H+ V F ++ SG ED +++W
Sbjct: 222 ATLEG-HMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 29/210 (13%)
Query: 65 FSPNGEWIASADVSGTVRIWGAHNDHVLKK----EFRVLSGR-IDDLQWSPDGLRIVACG 119
F P W+ + SG V +W ++ E V +G+ I W IV
Sbjct: 21 FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWI-----IVGSD 75
Query: 120 DGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGP-PF 178
D + +R F +++G V +F+ H + S A P++P+ + + +D V + +
Sbjct: 76 DFR----IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNW 130
Query: 179 KFKLSHRGHSNFVNCVRFSP-DGSKFISVSSDKKGIIYDGKTADKIGELSPE----DGHK 233
+ + GH +FV CV F+P D S F S D+ ++ +G+ +P G +
Sbjct: 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW------SLGQSTPNFTLTTGQE 184
Query: 234 GSVYAVSWS--PDGKQVLTASADKSAKVWD 261
V V + PD ++TAS D + K+WD
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWD 214
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 108/275 (39%), Gaps = 35/275 (12%)
Query: 14 TERGRGILISGHPKSNSILYT--NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEW 71
++R +GI HP +L T +GR V + + ++V P +F W
Sbjct: 13 SDRVKGI--DFHPTEPWVLTTLYSGR-VELWNYETQVEVRSIQVTETPVRAGKFIARKNW 69
Query: 72 IASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSL----- 126
I +R++ + ++ D + PD +R +A K L
Sbjct: 70 IIVGSDDFRIRVFNYNTGE-----------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDD 118
Query: 127 --VRAFMWDSGTNVGE-FDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYE----GPPFK 179
V+ + W++ + + F+GH V+ AF P P A+ D V + P F
Sbjct: 119 LTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT 178
Query: 180 FKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAV 239
N+V+ PD I+ S D I+D +T + L +GH +V
Sbjct: 179 LTTGQERGVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATL---EGHMSNVSFA 234
Query: 240 SWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTL 274
+ P +++ S D + K+W+ S K++KTL
Sbjct: 235 VFHPTLPIIISGSEDGTLKIWNSST---YKVEKTL 266
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 73/175 (41%), Gaps = 10/175 (5%)
Query: 433 VLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRG 492
V +R +V T PV A + I+GS D ++RV++ +T + E H
Sbjct: 46 VEVRSIQVTET-----PVRAGKFIARKNWIIVGSDDFRIRVFNY--NTGEKVVDFEAHPD 98
Query: 493 AVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNN-SMVAT 551
+ I P SG + +W+ + + H + C+A++P + S A+
Sbjct: 99 YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158
Query: 552 GSLDTCVIIYEIDKPASSRMTIKGAHLGGVY--GLAFTDEHSVVSSGEDACVRVW 604
G LD V ++ + + + G G Y D+ ++++ +D +++W
Sbjct: 159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 7/155 (4%)
Query: 454 AIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSP-DVSMFASGDVN 512
A+ P + GS D +++++ + E+ E H V + ++P D S FASG ++
Sbjct: 104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-FEGHEHFVMCVAFNPKDPSTFASGCLD 162
Query: 513 REAIVWDRVSREVKLKNMLYHTARINCLAWS--PNNSMVATGSLDTCVIIYEIDKPASSR 570
R VW +N + + P+ + T S D + I++ + S
Sbjct: 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY-QTKSCV 221
Query: 571 MTIKGAHLGGVYGLAFTDEHSVVSSG-EDACVRVW 604
T++G H+ V F ++ SG ED +++W
Sbjct: 222 ATLEG-HMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 93 KKEFRVLSGRIDDLQWSPDG-LRIVACGDGKGKSLVRAFMWDSGTN--VGEFDGHSRRVL 149
++ R +I + W D L + A DGK +WDS T V S V+
Sbjct: 59 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGK------LIIWDSYTTNKVHAIPLRSSWVM 112
Query: 150 SCAFKPSRPFRIATCGEDFLVNFY-----EGPPFKFKLSHRGHSNFVNCVRFSPDGSKFI 204
+CA+ PS + +A G D + + Y EG + GH+ +++C RF D ++ +
Sbjct: 113 TCAYAPSGNY-VACGGLDNICSIYNLKTREGN-VRVSRELAGHTGYLSCCRF-LDDNQIV 169
Query: 205 SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE 264
+ S D ++D + + + GH G V ++S +PD + ++ + D SAK+WD+ E
Sbjct: 170 TSSGDTTCALWD---IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 226
Query: 265 DNHGKLKKTLT 275
G ++T T
Sbjct: 227 ---GMCRQTFT 234
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 490 HRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMV 549
H G V + +PD +F SG + A +WD V + + H + IN + + PN +
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWD-VREGMCRQTFTGHESDINAICFFPNGNAF 252
Query: 550 ATGSLDTCVIIYEIDKPASSRMTIKGAH-LGGVYGLAFTDEHSVVSSGED 598
ATGS D ++++ + MT + + G+ ++F+ ++ +G D
Sbjct: 253 ATGSDDATCRLFDL-RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 301
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
L H + + + D + S + + I+WD + K+ + ++ + A++P+
Sbjct: 61 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN-KVHAIPLRSSWVMTCAYAPS 119
Query: 546 NSMVATGSLDTCVIIYEID-KPASSRMTIKGA-HLGGVYGLAFTDEHSVVSSGEDACVRV 603
+ VA G LD IY + + + R++ + A H G + F D++ +V+S D +
Sbjct: 120 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 179
Query: 604 W 604
W
Sbjct: 180 W 180
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 15/167 (8%)
Query: 100 SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSR 157
+G + L +PD V+ G A +WD G F GH + + F P+
Sbjct: 195 TGDVMSLSLAPDTRLFVS-----GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG 249
Query: 158 PFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFV---NCVRFSPDGSKFISVSSDKKGII 214
AT +D ++ + +++ H N + V FS G ++ D +
Sbjct: 250 N-AFATGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 307
Query: 215 YDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWD 261
+D AD+ G L+ GH V + + DG V T S D K+W+
Sbjct: 308 WDALKADRAGVLA---GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Query: 450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRG---AVSVIRYSPDVSMF 506
+ A P+G+ GS D R++ +R D +E + H ++ + +S +
Sbjct: 240 INAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVSFSKSGRLL 296
Query: 507 ASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYE 562
+G + VWD + + + + H R++CL + + VATGS D+ + I+
Sbjct: 297 LAGYDDFNCNVWDALKAD-RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 73/175 (41%), Gaps = 8/175 (4%)
Query: 178 FKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVY 237
+ + + RGH + + + D +S S D K II+D T +K+ + V
Sbjct: 56 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR---SSWVM 112
Query: 238 AVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLV 297
+++P G V D ++++ + G ++ + +G G L C + +D +
Sbjct: 113 TCAYAPSGNYVACGGLDNICSIYNL-KTREGNVRVSRELAGHTG---YLSCCRFLDDNQI 168
Query: 298 IVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKW 352
+ S G T + + +GH +V +L+ L D ++ +S + D W
Sbjct: 169 VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLS-LAPDTRLFVSGACDASAKLW 222
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 29/210 (13%)
Query: 65 FSPNGEWIASADVSGTVRIWGAHNDHVLKK----EFRVLSGR-IDDLQWSPDGLRIVACG 119
F P W+ + SG V +W ++ E V +G+ I W IV
Sbjct: 21 FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWI-----IVGSD 75
Query: 120 DGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGP-PF 178
D + +R F +++G V +F+ H + S A P++P+ + + +D V + +
Sbjct: 76 DFR----IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNW 130
Query: 179 KFKLSHRGHSNFVNCVRFSP-DGSKFISVSSDKKGIIYDGKTADKIGELSPE----DGHK 233
+ + GH +FV CV F+P D S F S D+ ++ +G+ +P G +
Sbjct: 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW------SLGQSTPNFTLTTGQE 184
Query: 234 GSVYAVSWS--PDGKQVLTASADKSAKVWD 261
V V + PD ++TAS D + K+WD
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWD 214
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 108/275 (39%), Gaps = 35/275 (12%)
Query: 14 TERGRGILISGHPKSNSILYT--NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEW 71
++R +GI HP +L T +GR V + + ++V P +F W
Sbjct: 13 SDRVKGI--DFHPTEPWVLTTLYSGR-VELWNYETQVEVRSIQVTETPVRAGKFIARKNW 69
Query: 72 IASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSL----- 126
I +R++ + ++ D + PD +R +A K L
Sbjct: 70 IIVGSDDFRIRVFNYNTGE-----------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDD 118
Query: 127 --VRAFMWDSGTNVGE-FDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYE----GPPFK 179
V+ + W++ + + F+GH V+ AF P P A+ D V + P F
Sbjct: 119 LTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT 178
Query: 180 FKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAV 239
N+V+ PD I+ S D I+D +T + L +GH +V
Sbjct: 179 LTTGQERGVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATL---EGHMSNVSFA 234
Query: 240 SWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTL 274
+ P +++ S D + K+W+ S K++KTL
Sbjct: 235 VFHPTLPIIISGSEDGTLKIWNSST---YKVEKTL 266
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 73/177 (41%), Gaps = 14/177 (7%)
Query: 433 VLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAV--LEKH 490
V +R +V T PV A + I+GS D ++RV++ T E V E H
Sbjct: 46 VEVRSIQVTET-----PVRAGKFIARKNWIIVGSDDFRIRVFNYN----TGEKVVDFEAH 96
Query: 491 RGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNN-SMV 549
+ I P SG + +W+ + + H + C+A++P + S
Sbjct: 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF 156
Query: 550 ATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVY--GLAFTDEHSVVSSGEDACVRVW 604
A+G LD V ++ + + + G G Y D+ ++++ +D +++W
Sbjct: 157 ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 7/155 (4%)
Query: 454 AIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSP-DVSMFASGDVN 512
A+ P + GS D +++++ + E+ E H V + ++P D S FASG ++
Sbjct: 104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-FEGHEHFVMCVAFNPKDPSTFASGCLD 162
Query: 513 REAIVWDRVSREVKLKNMLYHTARINCLAWS--PNNSMVATGSLDTCVIIYEIDKPASSR 570
R VW +N + + P+ + T S D + I++ + S
Sbjct: 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY-QTKSCV 221
Query: 571 MTIKGAHLGGVYGLAFTDEHSVVSSG-EDACVRVW 604
T++G H+ V F ++ SG ED +++W
Sbjct: 222 ATLEG-HMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 93 KKEFRVLSGRIDDLQWSPDG-LRIVACGDGKGKSLVRAFMWDSGTN--VGEFDGHSRRVL 149
++ R +I + W D L + A DGK +WDS T V S V+
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGK------LIIWDSYTTNKVHAIPLRSSWVM 101
Query: 150 SCAFKPSRPFRIATCGEDFLVNFY-----EGPPFKFKLSHRGHSNFVNCVRFSPDGSKFI 204
+CA+ PS + +A G D + + Y EG + GH+ +++C RF D ++ +
Sbjct: 102 TCAYAPSGNY-VACGGLDNICSIYNLKTREGN-VRVSRELAGHTGYLSCCRF-LDDNQIV 158
Query: 205 SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE 264
+ S D ++D + + + GH G V ++S +PD + ++ + D SAK+WD+ E
Sbjct: 159 TSSGDTTCALWD---IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 265 DNHGKLKKTLT 275
G ++T T
Sbjct: 216 ---GMCRQTFT 223
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 490 HRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMV 549
H G V + +PD +F SG + A +WD V + + H + IN + + PN +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWD-VREGMCRQTFTGHESDINAICFFPNGNAF 241
Query: 550 ATGSLDTCVIIYEIDKPASSRMTIKGAH-LGGVYGLAFTDEHSVVSSGED 598
ATGS D ++++ + MT + + G+ ++F+ ++ +G D
Sbjct: 242 ATGSDDATCRLFDL-RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
L H + + + D + S + + I+WD + K+ + ++ + A++P+
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN-KVHAIPLRSSWVMTCAYAPS 108
Query: 546 NSMVATGSLDTCVIIYEID-KPASSRMTIKGA-HLGGVYGLAFTDEHSVVSSGEDACVRV 603
+ VA G LD IY + + + R++ + A H G + F D++ +V+S D +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 604 W 604
W
Sbjct: 169 W 169
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 15/167 (8%)
Query: 100 SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSR 157
+G + L +PD V+ G A +WD G F GH + + F P+
Sbjct: 184 TGDVMSLSLAPDTRLFVS-----GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG 238
Query: 158 PFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFV---NCVRFSPDGSKFISVSSDKKGII 214
AT +D ++ + +++ H N + V FS G ++ D +
Sbjct: 239 N-AFATGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296
Query: 215 YDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWD 261
+D AD+ G L+ GH V + + DG V T S D K+W+
Sbjct: 297 WDALKADRAGVLA---GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Query: 450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRG---AVSVIRYSPDVSMF 506
+ A P+G+ GS D R++ +R D +E + H ++ + +S +
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 507 ASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYE 562
+G + VWD + + + + H R++CL + + VATGS D+ + I+
Sbjct: 286 LAGYDDFNCNVWDALKAD-RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 73/175 (41%), Gaps = 8/175 (4%)
Query: 178 FKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVY 237
+ + + RGH + + + D +S S D K II+D T +K+ + V
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR---SSWVM 101
Query: 238 AVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLV 297
+++P G V D ++++ + G ++ + +G G L C + +D +
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNL-KTREGNVRVSRELAGHTG---YLSCCRFLDDNQI 157
Query: 298 IVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKW 352
+ S G T + + +GH +V +L+ L D ++ +S + D W
Sbjct: 158 VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLS-LAPDTRLFVSGACDASAKLW 211
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 93 KKEFRVLSGRIDDLQWSPDG-LRIVACGDGKGKSLVRAFMWDSGTN--VGEFDGHSRRVL 149
++ R +I + W D L + A DGK +WDS T V S V+
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGK------LIIWDSYTTNKVHAIPLRSSWVM 101
Query: 150 SCAFKPSRPFRIATCGEDFLVNFY-----EGPPFKFKLSHRGHSNFVNCVRFSPDGSKFI 204
+CA+ PS + +A G D + + Y EG + GH+ +++C RF D ++ +
Sbjct: 102 TCAYAPSGNY-VACGGLDNICSIYNLKTREGN-VRVSRELAGHTGYLSCCRF-LDDNQIV 158
Query: 205 SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE 264
+ S D ++D + + + GH G V ++S +PD + ++ + D SAK+WD+ E
Sbjct: 159 TSSGDTTCALWD---IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 265 DNHGKLKKTLT 275
G ++T T
Sbjct: 216 ---GMCRQTFT 223
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 490 HRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMV 549
H G V + +PD +F SG + A +WD V + + H + IN + + PN +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWD-VREGMCRQTFTGHESDINAICFFPNGNAF 241
Query: 550 ATGSLDTCVIIYEIDKPASSRMTIKGAH-LGGVYGLAFTDEHSVVSSGED 598
ATGS D ++++ + MT + + G+ ++F+ ++ +G D
Sbjct: 242 ATGSDDATCRLFDL-RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
L H + + + D + S + + I+WD + K+ + ++ + A++P+
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN-KVHAIPLRSSWVMTCAYAPS 108
Query: 546 NSMVATGSLDTCVIIYEID-KPASSRMTIKGA-HLGGVYGLAFTDEHSVVSSGEDACVRV 603
+ VA G LD IY + + + R++ + A H G + F D++ +V+S D +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 604 W 604
W
Sbjct: 169 W 169
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 15/167 (8%)
Query: 100 SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSR 157
+G + L +PD V+ G A +WD G F GH + + F P+
Sbjct: 184 TGDVMSLSLAPDTRLFVS-----GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG 238
Query: 158 PFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFV---NCVRFSPDGSKFISVSSDKKGII 214
AT +D ++ + +++ H N + V FS G ++ D +
Sbjct: 239 N-AFATGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296
Query: 215 YDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWD 261
+D AD+ G L+ GH V + + DG V T S D K+W+
Sbjct: 297 WDALKADRAGVLA---GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Query: 450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRG---AVSVIRYSPDVSMF 506
+ A P+G+ GS D R++ +R D +E + H ++ + +S +
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 507 ASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYE 562
+G + VWD + + + + H R++CL + + VATGS D+ + I+
Sbjct: 286 LAGYDDFNCNVWDALKAD-RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 73/175 (41%), Gaps = 8/175 (4%)
Query: 178 FKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVY 237
+ + + RGH + + + D +S S D K II+D T +K+ + V
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR---SSWVM 101
Query: 238 AVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLV 297
+++P G V D ++++ + G ++ + +G G L C + +D +
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNL-KTREGNVRVSRELAGHTG---YLSCCRFLDDNQI 157
Query: 298 IVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKW 352
+ S G T + + +GH +V +L+ L D ++ +S + D W
Sbjct: 158 VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLS-LAPDTRLFVSGACDASAKLW 211
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 93 KKEFRVLSGRIDDLQWSPDG-LRIVACGDGKGKSLVRAFMWDSGTN--VGEFDGHSRRVL 149
++ R +I + W D L + A DGK +WDS T V S V+
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGK------LIIWDSYTTNKVHAIPLRSSWVM 101
Query: 150 SCAFKPSRPFRIATCGEDFLVNFY-----EGPPFKFKLSHRGHSNFVNCVRFSPDGSKFI 204
+CA+ PS + +A G D + + Y EG + GH+ +++C RF D ++ +
Sbjct: 102 TCAYAPSGNY-VACGGLDNICSIYNLKTREGN-VRVSRELAGHTGYLSCCRF-LDDNQIV 158
Query: 205 SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE 264
+ S D ++D + + + GH G V ++S +PD + ++ + D SAK+WD+ E
Sbjct: 159 TSSGDTTCALWD---IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 265 DNHGKLKKTLT 275
G ++T T
Sbjct: 216 ---GMCRQTFT 223
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 490 HRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMV 549
H G V + +PD +F SG + A +WD V + + H + IN + + PN +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWD-VREGMCRQTFTGHESDINAICFFPNGNAF 241
Query: 550 ATGSLDTCVIIYEIDKPASSRMTIKGAH-LGGVYGLAFTDEHSVVSSGED 598
ATGS D ++++ + MT + + G+ ++F+ ++ +G D
Sbjct: 242 ATGSDDATCRLFDL-RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
L H + + + D + S + + I+WD + K+ + ++ + A++P+
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-KVHAIPLRSSWVMTCAYAPS 108
Query: 546 NSMVATGSLDTCVIIYEID-KPASSRMTIKGA-HLGGVYGLAFTDEHSVVSSGEDACVRV 603
+ VA G LD IY + + + R++ + A H G + F D++ +V+S D +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 604 W 604
W
Sbjct: 169 W 169
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 15/167 (8%)
Query: 100 SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSR 157
+G + L +PD V+ G A +WD G F GH + + F P+
Sbjct: 184 TGDVMSLSLAPDTRLFVS-----GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG 238
Query: 158 PFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFV---NCVRFSPDGSKFISVSSDKKGII 214
AT +D ++ + +++ H N + V FS G ++ D +
Sbjct: 239 N-AFATGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296
Query: 215 YDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWD 261
+D AD+ G L+ GH V + + DG V T S D K+W+
Sbjct: 297 WDALKADRAGVLA---GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Query: 450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRG---AVSVIRYSPDVSMF 506
+ A P+G+ GS D R++ +R D +E + H ++ + +S +
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 507 ASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYE 562
+G + VWD + + + + H R++CL + + VATGS D+ + I+
Sbjct: 286 LAGYDDFNCNVWDALKAD-RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 73/175 (41%), Gaps = 8/175 (4%)
Query: 178 FKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVY 237
+ + + RGH + + + D +S S D K II+D T +K+ + V
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLR---SSWVM 101
Query: 238 AVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLV 297
+++P G V D ++++ + G ++ + +G G L C + +D +
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNL-KTREGNVRVSRELAGHTG---YLSCCRFLDDNQI 157
Query: 298 IVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKW 352
+ S G T + + +GH +V +L+ L D ++ +S + D W
Sbjct: 158 VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLS-LAPDTRLFVSGACDASAKLW 211
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 93 KKEFRVLSGRIDDLQWSPDG-LRIVACGDGKGKSLVRAFMWDSGTN--VGEFDGHSRRVL 149
++ R +I + W D L + A DGK +WDS T V S V+
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGK------LIIWDSYTTNKVHAIPLRSSWVM 101
Query: 150 SCAFKPSRPFRIATCGEDFLVNFY-----EGPPFKFKLSHRGHSNFVNCVRFSPDGSKFI 204
+CA+ PS + +A G D + + Y EG + GH+ +++C RF D ++ +
Sbjct: 102 TCAYAPSGNY-VACGGLDNICSIYNLKTREGN-VRVSRELAGHTGYLSCCRF-LDDNQIV 158
Query: 205 SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE 264
+ S D ++D + + + GH G V ++S +PD + ++ + D SAK+WD+ E
Sbjct: 159 TSSGDTTCALWD---IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 265 DNHGKLKKTLT 275
G ++T T
Sbjct: 216 ---GMCRQTFT 223
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 490 HRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMV 549
H G V + +PD +F SG + A +WD V + + H + IN + + PN +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWD-VREGMCRQTFTGHESDINAICFFPNGNAF 241
Query: 550 ATGSLDTCVIIYEIDKPASSRMTIKGAH-LGGVYGLAFTDEHSVVSSGED 598
ATGS D ++++ + MT + + G+ ++F+ ++ +G D
Sbjct: 242 ATGSDDATCRLFDL-RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
L H + + + D + S + + I+WD + K+ + ++ + A++P+
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-KVHAIPLRSSWVMTCAYAPS 108
Query: 546 NSMVATGSLDTCVIIYEID-KPASSRMTIKGA-HLGGVYGLAFTDEHSVVSSGEDACVRV 603
+ VA G LD IY + + + R++ + A H G + F D++ +V+S D +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 604 W 604
W
Sbjct: 169 W 169
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 15/167 (8%)
Query: 100 SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSR 157
+G + L +PD V+ G A +WD G F GH + + F P+
Sbjct: 184 TGDVMSLSLAPDTRLFVS-----GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG 238
Query: 158 PFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFV---NCVRFSPDGSKFISVSSDKKGII 214
AT +D ++ + +++ H N + V FS G ++ D +
Sbjct: 239 N-AFATGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296
Query: 215 YDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWD 261
+D AD+ G L+ GH V + + DG V T S D K+W+
Sbjct: 297 WDALKADRAGVLA---GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Query: 450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRG---AVSVIRYSPDVSMF 506
+ A P+G+ GS D R++ +R D +E + H ++ + +S +
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 507 ASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYE 562
+G + VWD + + + + H R++CL + + VATGS D+ + I+
Sbjct: 286 LAGYDDFNCNVWDALKAD-RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 73/175 (41%), Gaps = 8/175 (4%)
Query: 178 FKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVY 237
+ + + RGH + + + D +S S D K II+D T +K+ + V
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLR---SSWVM 101
Query: 238 AVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLV 297
+++P G V D ++++ + G ++ + +G G L C + +D +
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNL-KTREGNVRVSRELAGHTG---YLSCCRFLDDNQI 157
Query: 298 IVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKW 352
+ S G T + + +GH +V +L+ L D ++ +S + D W
Sbjct: 158 VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLS-LAPDTRLFVSGACDASAKLW 211
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 99/233 (42%), Gaps = 19/233 (8%)
Query: 131 MWDSGTNVGEFDGH-SRRVLSCAFKPSRPFRIATCGEDFLVNFY--EGPPFKFK-LSHRG 186
M DS +G H R A+ P+ +A+CG D + + EG + K + G
Sbjct: 1 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTL-LASCGGDRRIRIWGTEGDSWICKSVLSEG 59
Query: 187 HSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGK 246
H V V +SP G+ S S D I+ K D ++ +GH+ V +V+W+P G
Sbjct: 60 HQRTVRKVAWSPCGNYLASASFDATTCIWK-KNQDDFECVTTLEGHENEVKSVAWAPSGN 118
Query: 247 QVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQ--NDFLVIVSLGGT 304
+ T S DKS VW++ E++ + L S + V + +W + L S T
Sbjct: 119 LLATCSRDKSVWVWEVDEEDEYECVSVLN-SHTQDVKHV----VWHPSQELLASASYDDT 173
Query: 305 ISIF-SANDLEKSPLQLSGHMKNVTALTVLNIDP--KVILSSSYDGLIVKWIQ 354
+ ++ D L GH V +L DP + + S S D + W Q
Sbjct: 174 VKLYREEEDDWVCCATLEGHESTVWSLA---FDPSGQRLASCSDDRTVRIWRQ 223
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 92/214 (42%), Gaps = 15/214 (7%)
Query: 57 AYPATVARF---SPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSG----RIDDLQWS 109
A+P + F +P G +AS +RIWG D + K VLS + + WS
Sbjct: 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKS--VLSEGHQRTVRKVAWS 70
Query: 110 PDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFL 169
P G +A + + D V +GH V S A+ PS +ATC D
Sbjct: 71 PCG-NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNL-LATCSRDKS 128
Query: 170 VNFYE---GPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGEL 226
V +E ++ H+ V V + P S S D +Y + D +
Sbjct: 129 VWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCA 188
Query: 227 SPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVW 260
+ E GH+ +V+++++ P G+++ + S D++ ++W
Sbjct: 189 TLE-GHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
Query: 454 AIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVL-EKHRGAVSVIRYSPDVSMFASGDVN 512
A P G+ D ++R++ GD+ ++VL E H+ V + +SP + AS +
Sbjct: 23 AWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD 82
Query: 513 REAIVWDRVSREVKLKNMLY-HTARINCLAWSPNNSMVATGSLDTCVIIYEIDK 565
+W + + + L H + +AW+P+ +++AT S D V ++E+D+
Sbjct: 83 ATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE 136
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 13/168 (7%)
Query: 106 LQWSPDGLRIVACGDGKGKSLVRAF-----MWDSGTNVGEFDGHSRRVLSCAFKPSRPFR 160
L W+P G + +CG G +R + W + + E GH R V A+ P +
Sbjct: 22 LAWNPAGTLLASCG---GDRRIRIWGTEGDSWICKSVLSE--GHQRTVRKVAWSPCGNY- 75
Query: 161 IATCGEDFLVNFYEGPPFKFKL--SHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGK 218
+A+ D ++ F+ + GH N V V ++P G+ + S DK +++
Sbjct: 76 LASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD 135
Query: 219 TADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDN 266
D+ +S + H V V W P + + +AS D + K++ ED+
Sbjct: 136 EEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDD 183
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 3/155 (1%)
Query: 454 AIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNR 513
A +P G+ S D ++ D LE H V + ++P ++ A+ ++
Sbjct: 68 AWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK 127
Query: 514 EAIVW--DRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRM 571
VW D + + HT + + W P+ ++A+ S D V +Y ++
Sbjct: 128 SVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCC 187
Query: 572 TIKGAHLGGVYGLAFTDE-HSVVSSGEDACVRVWR 605
H V+ LAF + S +D VR+WR
Sbjct: 188 ATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWR 222
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 74/190 (38%), Gaps = 26/190 (13%)
Query: 50 VSIYGEHAYPATVARFSPNGEWIASADVSGTVRIW-GAHNDHVLKKEFRVLSGRIDDLQW 108
VS+ H + P+ E +ASA TV+++ +D V + L +
Sbjct: 143 VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAF 202
Query: 109 SPDGLRIVACGDGKGKSLVRAFM---------------WDSGTNVGEFDGHSRRVLSCAF 153
P G R+ +C D + + R ++ W + F HSR + A+
Sbjct: 203 DPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF--HSRTIYDIAW 260
Query: 154 KPSRPFRIATCGEDFLVNFYEGP---PFK--FKLS---HRGHSNFVNCVRFSPDGSKFIS 205
CG+D + F E P P + F L+ H+ HS VNCV ++P ++
Sbjct: 261 CQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLA 320
Query: 206 VSSDKKGIIY 215
SD + +
Sbjct: 321 SCSDDGEVAF 330
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 29/135 (21%)
Query: 65 FSPNGEWIASADVSGTVRIWGAH---NDHVLK--------KEFRVLSG----RIDDLQWS 109
F P+G+ +AS TVRIW + N+ + K LSG I D+ W
Sbjct: 202 FDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWC 261
Query: 110 P-DGLRIVACGDGKGKSLVRAFMWDSGTNVGE---------FDGHSRRVLSCAFKPSRPF 159
G ACGD +R F D ++ + HS+ V A+ P P
Sbjct: 262 QLTGALATACGDDA----IRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPG 317
Query: 160 RIATCGEDFLVNFYE 174
+A+C +D V F++
Sbjct: 318 LLASCSDDGEVAFWK 332
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 71/311 (22%), Positives = 133/311 (42%), Gaps = 57/311 (18%)
Query: 177 PFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSV 236
PF S +N V C+ +S DG+ ++ + + +++ KT + L + H+ +
Sbjct: 97 PFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVL---NFHRAPI 152
Query: 237 YAVSWSPDGKQVLTASADKSAKVWDI---SEDNHGKLKKT----LTPSGSGGVDDMLVGC 289
+V W+ DG +++ + +W++ + H +LK+T + G + V
Sbjct: 153 VSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDV 212
Query: 290 LWQNDFLVIVSLGGTISIFSANDLEKSPL-QLSGHMKNVTALTVLNIDPKVILSSSYDGL 348
W +D ++ G +IF EK+P +L GH ++ L N K++LS+S DG
Sbjct: 213 EWVDDDKFVIP-GPKGAIFVYQITEKTPTGKLIGHHGPISVLE-FNDTNKLLLSASDDGT 270
Query: 349 IVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGF--DNKIWRVSLQGDQCGYANSID 406
+ W G G NSQ CF + IV++ + D+K+ S+ G S+
Sbjct: 271 LRIWHGGNG---------NSQ-NCFYGHSQSIVSASWVGDDKVISCSMDG-------SVR 313
Query: 407 IGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGS 466
+ S ++ +AL + V P+ A I+ DG + +
Sbjct: 314 LWSLKQNTLLALSIVDGV------------------------PIFAGRISQDGQKYAVAF 349
Query: 467 QDGKLRVYSIR 477
DG++ VY ++
Sbjct: 350 MDGQVNVYDLK 360
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 21/171 (12%)
Query: 450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASG 509
VT A + DG+ + G ++G+LR+++ G L VL HR + ++++ D + S
Sbjct: 111 VTCLAWSHDGNSIVTGVENGELRLWNKTGALLN---VLNFHRAPIVSVKWNKDGTHIISM 167
Query: 510 DVNREAIVWDRVSREVKLKNMLYHT--ARINC------------LAWSPNNSMVATGSLD 555
DV I+W+ +S V L T + IN + W ++ V G
Sbjct: 168 DVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGP-K 226
Query: 556 TCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHS-VVSSGEDACVRVWR 605
+ +Y+I + + I H G + L F D + ++S+ +D +R+W
Sbjct: 227 GAIFVYQITEKTPTGKLI--GHHGPISVLEFNDTNKLLLSASDDGTLRIWH 275
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 73/331 (22%), Positives = 131/331 (39%), Gaps = 47/331 (14%)
Query: 47 PLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRID-- 104
P + ++ G H P T F P + SA T+++W D+ R L G D
Sbjct: 99 PEKYALSG-HRSPVTRVIFHPVFSVMVSASEDATIKVW----DYETGDFERTLKGHTDSV 153
Query: 105 -DLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIAT 163
D+ + G + +C ++ + + + GH V S + P+ I +
Sbjct: 154 QDISFDHSGKLLASCS---ADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD-HIVS 209
Query: 164 CGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKI 223
D + +E + GH +V VR + DG+ S S+D+ ++ T +
Sbjct: 210 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 269
Query: 224 GELSPEDGHKGSVYAVSWSPD--------------------GKQVLTASADKSAKVWDIS 263
EL H+ V +SW+P+ G +L+ S DK+ K+WD+S
Sbjct: 270 AELRE---HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 326
Query: 264 EDNHGKLKKTLTPSGSGGVDDMLVGCLWQN--DFLVIVSLGGTISIFSANDLEKSPLQLS 321
G TL G D+ + G L+ + F++ + T+ ++ + ++ L+
Sbjct: 327 T---GMCLMTLV-----GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN-KRCMKTLN 377
Query: 322 GHMKNVTALTVLNIDPKVILSSSYDGLIVKW 352
H VT+L P V+ + S D + W
Sbjct: 378 AHEHFVTSLDFHKTAPYVV-TGSVDQTVKVW 407
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 93/209 (44%), Gaps = 35/209 (16%)
Query: 423 LVLVSTDSGVVL--LRGAEVVSTINLR-FPVTASAIAPDGSEAIIGSQDGKLRVYSIRGD 479
L S D + L +G E + T++ V++ +I P+G + S+D ++++ ++
Sbjct: 165 LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 224
Query: 480 TLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINC 539
+ HR V ++R + D ++ AS ++ VW ++E K + + H + C
Sbjct: 225 YCVK--TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE-LREHRHVVEC 281
Query: 540 LAWSPNNS--------------------MVATGSLDTCVIIYEIDKPASSRMTIKGAHLG 579
++W+P +S + +GS D + ++++ MT+ G H
Sbjct: 282 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS-TGMCLMTLVG-HDN 339
Query: 580 GVYGLAFTDEHS----VVSSGEDACVRVW 604
V G+ F HS ++S +D +RVW
Sbjct: 340 WVRGVLF---HSGGKFILSCADDKTLRVW 365
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGS 235
PP K+ LS GH + V V F P S +S S D ++D +T D L GH S
Sbjct: 98 PPEKYALS--GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK---GHTDS 152
Query: 236 VYAVSWSPDGKQVLTASADKSAKVWDI 262
V +S+ GK + + SAD + K+WD
Sbjct: 153 VQDISFDHSGKLLASCSADMTIKLWDF 179
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 76/344 (22%), Positives = 130/344 (37%), Gaps = 53/344 (15%)
Query: 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL 290
GH+ V V + P +++AS D + KVWD G ++TL + V D+
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET---GDFERTL-KGHTDSVQDISFDH- 160
Query: 291 WQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVL-NIDPKVILSSSYDGLI 349
L S TI ++ E + GH NV++++++ N D I+S+S D I
Sbjct: 161 -SGKLLASCSADMTIKLWDFQGFE-CIRTMHGHDHNVSSVSIMPNGDH--IVSASRDKTI 216
Query: 350 VKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGS 409
W GY +K F E W ++ +Q G I S
Sbjct: 217 KMWEVQTGYC----------VKTFTGHRE-----------WVRMVRPNQDGTL----IAS 251
Query: 410 QPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAP-DGSEA------ 462
D +V + V+ + + L VV I+ + S+I+ GSE
Sbjct: 252 CSNDQTVRV----WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP 307
Query: 463 ----IIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVW 518
+ GS+D ++++ + L H V + + S ++ VW
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCL--MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 365
Query: 519 DRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYE 562
D ++ +K + H + L + V TGS+D V ++E
Sbjct: 366 DYKNKRC-MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/124 (18%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
Query: 483 EEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAW 542
E+ L HR V+ + + P S+ S + VWD + + + + + HT + +++
Sbjct: 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE-RTLKGHTDSVQDISF 158
Query: 543 SPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVR 602
+ ++A+ S D + +++ R H + +H +VS+ D ++
Sbjct: 159 DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH-IVSASRDKTIK 217
Query: 603 VWRL 606
+W +
Sbjct: 218 MWEV 221
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 171 NFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPED 230
N Y G P K + GH++FV+ + S + IS S DK ++D +T
Sbjct: 62 NGYFGIPHK---ALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFV--- 115
Query: 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDI 262
GH+ VY+V++SPD +Q+L+A A++ K+W+I
Sbjct: 116 GHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 131 MWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYE-GPPFKFKLSHR-G 186
+WD +GT F GH V S AF P +I + G + + + KF + +
Sbjct: 102 LWDLRTGTTYKRFVGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGECKFSSAEKEN 160
Query: 187 HSNFVNCVRFSP---DGSKFISVSSDKKGIIYDGKTADKIGELSPE-----DGHKGSVYA 238
HS++V+CVR+SP +K + + +DG+ K+ + + H+ +V
Sbjct: 161 HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRL--KVWNTNFQIRYTFKAHESNVNH 218
Query: 239 VSWSPDGKQVLTASADKSAKVWDI 262
+S SP+GK + T DK +WDI
Sbjct: 219 LSISPNGKYIATGGKDKKLLIWDI 242
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 75/167 (44%), Gaps = 14/167 (8%)
Query: 450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVS----- 504
V + A +PD + + + ++++++I G+ A E H VS +RYSP +
Sbjct: 121 VYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKV 180
Query: 505 -----MFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVI 559
FAS + VW+ + +++ H + +N L+ SPN +ATG D ++
Sbjct: 181 QPFAPYFASVGWDGRLKVWN-TNFQIRY-TFKAHESNVNHLSISPNGKYIATGGKDKKLL 238
Query: 560 IYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRL 606
I++I + + +AF + V+ G D V+++ L
Sbjct: 239 IWDILNLTYPQREFDAG--STINQIAFNPKLQWVAVGTDQGVKIFNL 283
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASG 509
V+ A++ + AI S D LR++ +R T + V H+ V + +SPD S
Sbjct: 79 VSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFV--GHQSEVYSVAFSPDNRQILSA 136
Query: 510 DVNREAIVWDRVSREVKLKNMLY--HTARINCLAWSP 544
RE +W+ + E K + H+ ++C+ +SP
Sbjct: 137 GAEREIKLWN-ILGECKFSSAEKENHSDWVSCVRYSP 172
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 83/172 (48%), Gaps = 20/172 (11%)
Query: 174 EGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHK 233
E P F L RGH V V S G+ +S S D I++D + LS GH
Sbjct: 258 ENPYFVGVL--RGHXASVRTV--SGHGNIVVSGSYDNTLIVWDVAQXKCLYILS---GHT 310
Query: 234 GSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQN 293
+Y+ + + K+ ++AS D + ++WD+ +G+L TL + LVG L +
Sbjct: 311 DRIYSTIYDHERKRCISASXDTTIRIWDLE---NGELXYTLQGHTA------LVGLLRLS 361
Query: 294 D-FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSS 344
D FLV + G+I + AND + + S H N++A+T + +++S S
Sbjct: 362 DKFLVSAAADGSIRGWDANDYSR---KFSYHHTNLSAITTFYVSDNILVSGS 410
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 93/216 (43%), Gaps = 33/216 (15%)
Query: 159 FRIATCGEDFLVNFYEGPPF-KFKLSHRGH-SNFVNCVRFSPDGSKFISVSSDKKGIIYD 216
R++ F++ + P F + + RGH ++ + C++F + + I+ + DK +YD
Sbjct: 91 LRLSFLENIFILKNWYNPKFVPQRTTLRGHXTSVITCLQF--EDNYVITGADDKXIRVYD 148
Query: 217 GKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE-------DNHGK 269
+ +LS GH G V+A+ ++ G V + S D++ +VWDI + + H
Sbjct: 149 SINKKFLLQLS---GHDGGVWALKYAHGGILV-SGSTDRTVRVWDIKKGCCTHVFEGHNS 204
Query: 270 LKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQ---------- 319
+ L + ++ G +++ L + L S+ + PL
Sbjct: 205 TVRCLDIVEYKNIKYIVTGS--RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF 262
Query: 320 ---LSGHMKNVTALTVLNIDPKVILSSSYDGLIVKW 352
L GH +V ++ +++S SYD ++ W
Sbjct: 263 VGVLRGHXASVRTVSG---HGNIVVSGSYDNTLIVW 295
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 534 TARINCLAWSPNNSMVATGSLDTCVIIYE-IDKPASSRMTIKGAHLGGVYGLAFTDEHSV 592
T+ I CL + N V TG+ D + +Y+ I+K +++ H GGV+ L + +
Sbjct: 122 TSVITCLQFEDN--YVITGADDKXIRVYDSINKKFLLQLS---GHDGGVWALKYAHGGIL 176
Query: 593 VSSGEDACVRVW 604
VS D VRVW
Sbjct: 177 VSGSTDRTVRVW 188
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 83/172 (48%), Gaps = 20/172 (11%)
Query: 174 EGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHK 233
E P F L RGH V V S G+ +S S D I++D + LS GH
Sbjct: 258 ENPYFVGVL--RGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS---GHT 310
Query: 234 GSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQN 293
+Y+ + + K+ ++AS D + ++WD+ +G+L TL + LVG L +
Sbjct: 311 DRIYSTIYDHERKRCISASMDTTIRIWDLE---NGELMYTLQGHTA------LVGLLRLS 361
Query: 294 D-FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSS 344
D FLV + G+I + AND + + S H N++A+T + +++S S
Sbjct: 362 DKFLVSAAADGSIRGWDANDYSR---KFSYHHTNLSAITTFYVSDNILVSGS 410
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 534 TARINCLAWSPNNSMVATGSLDTCVIIYE-IDKPASSRMTIKGAHLGGVYGLAFTDEHSV 592
T+ I CL + N V TG+ D + +Y+ I+K +++ H GGV+ L + +
Sbjct: 122 TSVITCLQFEDN--YVITGADDKMIRVYDSINKKFLLQLS---GHDGGVWALKYAHGGIL 176
Query: 593 VSSGEDACVRVW 604
VS D VRVW
Sbjct: 177 VSGSTDRTVRVW 188
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
VL H +V + S ++ SG + IVWD V++ L + HT RI +
Sbjct: 265 VLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWD-VAQMKCLYILSGHTDRIYSTIYDHE 321
Query: 546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVW 604
+ S+DT + I++++ T++G + GL + +VS+ D +R W
Sbjct: 322 RKRCISASMDTTIRIWDLEN-GELMYTLQGH--TALVGLLRLSDKFLVSAAADGSIRGW 377
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 94/221 (42%), Gaps = 15/221 (6%)
Query: 139 GEFDGHSRRVLSCAFKPSRPFRIATCGED-FLVNF-YEGPPFKFKL---SHRGHSNFVNC 193
G +GH+ V S A +P + + D L+++ G KF + S +GHS+ V
Sbjct: 5 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 64
Query: 194 VRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA 253
+ DG+ +S S DK ++D T + GHK V +V +++ S
Sbjct: 65 CTLTADGAYALSASWDKTLRLWDVATGETYQRFV---GHKSDVMSVDIDKKASMIISGSR 121
Query: 254 DKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDL 313
DK+ KVW I G+ TL +V +D V + G + A +L
Sbjct: 122 DKTIKVWTIK----GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 177
Query: 314 EKSPLQ--LSGHMKNVTALTVLNIDPKVILSSSYDGLIVKW 352
+ ++ GH N+ LT + D +I S+ DG I+ W
Sbjct: 178 NQFQIEADFIGHNSNINTLTA-SPDGTLIASAGKDGEIMLW 217
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 79/162 (48%), Gaps = 15/162 (9%)
Query: 455 IAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPD-------VSMFA 507
I S I GS+D ++V++I+G L A L H VS +R P+ V++ +
Sbjct: 109 IDKKASMIISGSRDKTIKVWTIKGQCL---ATLLGHNDWVSQVRVVPNEKADDDSVTIIS 165
Query: 508 SGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPA 567
+G+ ++ W+ +++ + + H + IN L SP+ +++A+ D ++++ + A
Sbjct: 166 AGN-DKMVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL---A 220
Query: 568 SSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRLTPN 609
+ + + V+ LAF+ +++ ++V+ L P
Sbjct: 221 AKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQ 262
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 161 IATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTA 220
I + G D +V + F+ + GH++ +N + SPDG+ S D + ++++
Sbjct: 163 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 222
Query: 221 DKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA 253
+ LS +D V+++++SP+ + A+A
Sbjct: 223 KAMYTLSAQD----EVFSLAFSPNRYWLAAATA 251
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 79/188 (42%), Gaps = 23/188 (12%)
Query: 87 HNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSR 146
HND V + RV+ D D + I++ G+ K +V+A+ + +F GH+
Sbjct: 141 HNDWV--SQVRVVPNEKAD----DDSVTIISAGNDK---MVKAWNLNQFQIEADFIGHNS 191
Query: 147 RVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFK--FKLSHRGHSNFVNCVRFSPDGSKFI 204
+ + P IA+ G+D + + K + LS + V + FSP+ ++
Sbjct: 192 NINTLTASPDGTL-IASAGKDGEIMLWNLAAKKAMYTLSAQDE---VFSLAFSPN--RYW 245
Query: 205 SVSSDKKGI-IYDGKTADKIGELSPE-----DGHKGSVYAVSWSPDGKQVLTASADKSAK 258
++ GI ++ + +L PE + +++WS DG+ + D +
Sbjct: 246 LAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIR 305
Query: 259 VWDISEDN 266
VW + N
Sbjct: 306 VWQVMTAN 313
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 14/163 (8%)
Query: 456 APDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREA 515
A D S II + + K+ V + + EA H ++ + SPD ++ AS + E
Sbjct: 156 ADDDSVTIISAGNDKM-VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 214
Query: 516 IVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEID--------KPA 567
++W+ ++ K L + LA+SPN +A + T + ++ +D +P
Sbjct: 215 MLWNLAAK--KAMYTLSAQDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPE 271
Query: 568 SSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWR-LTPN 609
+ + K A V D ++ + D +RVW+ +T N
Sbjct: 272 FAGYS-KAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 313
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 23/146 (15%)
Query: 131 MWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFY--EGPPFKFKLSHRG 186
+WD +G F GH V+S + I + D + + +G L G
Sbjct: 85 LWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLL---G 140
Query: 187 HSNFVNCVRFSP------DGSKFISVSSDKKGIIYDGKTADKIGELSPED---GHKGSVY 237
H+++V+ VR P D IS +DK ++ + + E GH ++
Sbjct: 141 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN------LNQFQIEADFIGHNSNIN 194
Query: 238 AVSWSPDGKQVLTASADKSAKVWDIS 263
++ SPDG + +A D +W+++
Sbjct: 195 TLTASPDGTLIASAGKDGEIMLWNLA 220
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 13/161 (8%)
Query: 458 DGSEAII--GSQDGKLRVYSIRGDTLTEEAVLEK--HRGAVSVIRYSPDVSMFASGDVNR 513
D S+ I+ GS D K+++ S++ D T VL++ H+ A+ + + P S+ A+G +
Sbjct: 21 DFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS 80
Query: 514 EAIVW------DRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPA 567
+W DR L + H + +AWS + +AT S D V I+E D+
Sbjct: 81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESG 140
Query: 568 SSR--MTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWR 605
+++ H V + + E + SS D VR+W+
Sbjct: 141 EEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWK 181
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 182 LSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIY-DGKTADKIGE---LSPEDGHKGSVY 237
L H + V + P S + S D I+ ++AD+ E L+ +GH+ V
Sbjct: 52 LDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVK 111
Query: 238 AVSWSPDGKQVLTASADKSAKVWDISE 264
V+WS DG + T S DKS +W+ E
Sbjct: 112 GVAWSNDGYYLATCSRDKSVWIWETDE 138
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 73/173 (42%), Gaps = 18/173 (10%)
Query: 108 WSPDGLR-IVACGDGKGKSLVRAFMWDSGTNVGEFD--GHSRRVLSCAFKPSRPFRIATC 164
WS D + I+A G K + + +D T + D H + + S A++P +A
Sbjct: 18 WSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSL-LAAG 76
Query: 165 GEDFLVNFY---EGPPFKFKLSH----RGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDG 217
D V+ + E F++ GH N V V +S DG + S DK I++
Sbjct: 77 SFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE- 135
Query: 218 KTADKIGE----LSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDN 266
D+ GE +S H V V W P + ++S D + ++W +D+
Sbjct: 136 --TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD 186
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 77/181 (42%), Gaps = 21/181 (11%)
Query: 50 VSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWS 109
+S+ EH+ + P+ +AS+ TVRIW ++D + VL+G + WS
Sbjct: 146 ISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW--ECVAVLNGH-EGTVWS 202
Query: 110 PD-----GLRIVACGDGKGKSLVRAFMWDSGTNVGEF-------DGHSRRVLSCAFKPSR 157
D G+ + G V +M D + E+ D H R+V + A+ +
Sbjct: 203 SDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG 262
Query: 158 PFRIATCGEDFLVNFYEGPPFKFKLSHR---GHSNF-VNCVRFSPDGSKFISVSSDKKGI 213
IA+ G D ++ YE ++K+ + H + +N V++ K I + GI
Sbjct: 263 L--IASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGI 320
Query: 214 I 214
+
Sbjct: 321 V 321
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 54/261 (20%), Positives = 90/261 (34%), Gaps = 41/261 (15%)
Query: 11 VPSTERGRGILISGHP----KSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFS 66
+ S + +GIL +G K S+ Y + + +LD + H +
Sbjct: 17 IWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETA---------HKKAIRSVAWR 67
Query: 67 PNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLS------GRIDDLQWSPDGLRIVACGD 120
P+ +A+ TV IW E +L+ + + WS DG + C
Sbjct: 68 PHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR 127
Query: 121 GKGKSLVRAFMWDSGTNVGEFD------GHSRRVLSCAFKPSRPFRIATCGEDFLVNFYE 174
K ++W++ + E++ HS+ V + PS +A+ D V ++
Sbjct: 128 DKS-----VWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEAL-LASSSYDDTVRIWK 181
Query: 175 GPPFKFKLSH--RGHSNFVNCVRFSPDGSKFISVSSDKKGII----YDGKTADKIGELSP 228
++ GH V F F S + Y G D E
Sbjct: 182 DYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVC 241
Query: 229 E----DGHKGSVYAVSWSPDG 245
E D HK VY V+W +G
Sbjct: 242 EAILPDVHKRQVYNVAWGFNG 262
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 93/221 (42%), Gaps = 15/221 (6%)
Query: 139 GEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYE--GPPFKFKL---SHRGHSNFVNC 193
G +GH+ V S A +P + + D + ++ G KF + S +GHS+ V
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 194 VRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA 253
+ DG+ +S S DK ++D T + GHK V +V +++ S
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFV---GHKSDVMSVDIDKKASMIISGSR 127
Query: 254 DKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDL 313
DK+ KVW I G+ TL +V +D V + G + A +L
Sbjct: 128 DKTIKVWTIK----GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183
Query: 314 EKSPLQ--LSGHMKNVTALTVLNIDPKVILSSSYDGLIVKW 352
+ ++ GH N+ LT + D +I S+ DG I+ W
Sbjct: 184 NQFQIEADFIGHNSNINTLTA-SPDGTLIASAGKDGEIMLW 223
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 79/162 (48%), Gaps = 15/162 (9%)
Query: 455 IAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPD-------VSMFA 507
I S I GS+D ++V++I+G L A L H VS +R P+ V++ +
Sbjct: 115 IDKKASMIISGSRDKTIKVWTIKGQCL---ATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 508 SGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPA 567
+G+ ++ W+ +++ + + H + IN L SP+ +++A+ D ++++ + A
Sbjct: 172 AGN-DKMVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL---A 226
Query: 568 SSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRLTPN 609
+ + + V+ LAF+ +++ ++V+ L P
Sbjct: 227 AKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQ 268
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 161 IATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTA 220
I + G D +V + F+ + GH++ +N + SPDG+ S D + ++++
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Query: 221 DKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA 253
+ LS +D V+++++SP+ + A+A
Sbjct: 229 KAMYTLSAQD----EVFSLAFSPNRYWLAAATA 257
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 23/188 (12%)
Query: 87 HNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSR 146
HND V + RV+ D D + I++ G+ K +V+A+ + +F GH+
Sbjct: 147 HNDWV--SQVRVVPNEKAD----DDSVTIISAGNDK---MVKAWNLNQFQIEADFIGHNS 197
Query: 147 RVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFK--FKLSHRGHSNFVNCVRFSPDGSKFI 204
+ + P IA+ G+D + + K + LS + V + FSP+ ++
Sbjct: 198 NINTLTASPDGTL-IASAGKDGEIMLWNLAAKKAMYTLSAQDE---VFSLAFSPN--RYW 251
Query: 205 SVSSDKKGI-IYDGKTADKIGELSPE-DGHKGSV--YAVS--WSPDGKQVLTASADKSAK 258
++ GI ++ + +L PE G+ + +AVS WS DG+ + D +
Sbjct: 252 LAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIR 311
Query: 259 VWDISEDN 266
VW + N
Sbjct: 312 VWQVMTAN 319
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 23/146 (15%)
Query: 131 MWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFY--EGPPFKFKLSHRG 186
+WD +G F GH V+S + I + D + + +G L G
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLL---G 146
Query: 187 HSNFVNCVRFSP------DGSKFISVSSDKKGIIYDGKTADKIGELSPED---GHKGSVY 237
H+++V+ VR P D IS +DK ++ + + E GH ++
Sbjct: 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN------LNQFQIEADFIGHNSNIN 200
Query: 238 AVSWSPDGKQVLTASADKSAKVWDIS 263
++ SPDG + +A D +W+++
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWNLA 226
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 94/221 (42%), Gaps = 15/221 (6%)
Query: 139 GEFDGHSRRVLSCAFKPSRPFRIATCGED-FLVNF-YEGPPFKFKL---SHRGHSNFVNC 193
G +GH+ V S A +P + + D L+++ G KF + S +GHS+ V
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 194 VRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA 253
+ DG+ +S S DK ++D T + GHK V +V +++ S
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFV---GHKSDVMSVDIDKKASMIISGSR 127
Query: 254 DKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDL 313
DK+ KVW I G+ TL +V +D V + G + A +L
Sbjct: 128 DKTIKVWTIK----GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183
Query: 314 EKSPLQ--LSGHMKNVTALTVLNIDPKVILSSSYDGLIVKW 352
+ ++ GH N+ LT + D +I S+ DG I+ W
Sbjct: 184 NQFQIEADFIGHNSNINTLTA-SPDGTLIASAGKDGEIMLW 223
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 79/162 (48%), Gaps = 15/162 (9%)
Query: 455 IAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPD-------VSMFA 507
I S I GS+D ++V++I+G L A L H VS +R P+ V++ +
Sbjct: 115 IDKKASMIISGSRDKTIKVWTIKGQCL---ATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 508 SGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPA 567
+G+ ++ W+ +++ + + H + IN L SP+ +++A+ D ++++ + A
Sbjct: 172 AGN-DKMVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL---A 226
Query: 568 SSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRLTPN 609
+ + + V+ LAF+ +++ ++V+ L P
Sbjct: 227 AKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQ 268
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 161 IATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTA 220
I + G D +V + F+ + GH++ +N + SPDG+ S D + ++++
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Query: 221 DKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA 253
+ LS +D V+++++SP+ + A+A
Sbjct: 229 KAMYTLSAQD----EVFSLAFSPNRYWLAAATA 257
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 68/158 (43%), Gaps = 13/158 (8%)
Query: 456 APDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREA 515
A D S II + + K+ V + + EA H ++ + SPD ++ AS + E
Sbjct: 162 ADDDSVTIISAGNDKM-VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Query: 516 IVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEID--------KPA 567
++W+ ++ K L + LA+SPN +A + T + ++ +D +P
Sbjct: 221 MLWNLAAK--KAMYTLSAQDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPE 277
Query: 568 SSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWR 605
+ + K A V D ++ + D +RVW+
Sbjct: 278 FAGYS-KAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 25/183 (13%)
Query: 87 HNDHVLKKEFRVL-SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHS 145
HND V + RV+ + + DD D + I++ G+ K +V+A+ + +F GH+
Sbjct: 147 HNDWV--SQVRVVPNEKADD-----DSVTIISAGNDK---MVKAWNLNQFQIEADFIGHN 196
Query: 146 RRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFK--FKLSHRGHSNFVNCVRFSPDGSKF 203
+ + P IA+ G+D + + K + LS + V + FSP+ ++
Sbjct: 197 SNINTLTASPDGTL-IASAGKDGEIMLWNLAAKKAMYTLSAQDE---VFSLAFSPN--RY 250
Query: 204 ISVSSDKKGI-IYDGKTADKIGELSPE-----DGHKGSVYAVSWSPDGKQVLTASADKSA 257
++ GI ++ + +L PE + +++WS DG+ + D
Sbjct: 251 WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 258 KVW 260
+VW
Sbjct: 311 RVW 313
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 94/221 (42%), Gaps = 15/221 (6%)
Query: 139 GEFDGHSRRVLSCAFKPSRPFRIATCGED-FLVNF-YEGPPFKFKL---SHRGHSNFVNC 193
G +GH+ V S A +P + + D L+++ G KF + S +GHS+ V
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 194 VRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA 253
+ DG+ +S S DK ++D T + GHK V +V +++ S
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFV---GHKSDVMSVDIDKKASMIISGSR 127
Query: 254 DKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDL 313
DK+ KVW I G+ TL +V +D V + G + A +L
Sbjct: 128 DKTIKVWTIK----GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183
Query: 314 EKSPLQ--LSGHMKNVTALTVLNIDPKVILSSSYDGLIVKW 352
+ ++ GH N+ LT + D +I S+ DG I+ W
Sbjct: 184 NQFQIEADFIGHNSNINTLTA-SPDGTLIASAGKDGEIMLW 223
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 79/162 (48%), Gaps = 15/162 (9%)
Query: 455 IAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPD-------VSMFA 507
I S I GS+D ++V++I+G L A L H VS +R P+ V++ +
Sbjct: 115 IDKKASMIISGSRDKTIKVWTIKGQCL---ATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 508 SGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPA 567
+G+ ++ W+ +++ + + H + IN L SP+ +++A+ D ++++ + A
Sbjct: 172 AGN-DKMVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL---A 226
Query: 568 SSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRLTPN 609
+ + + V+ LAF+ +++ ++V+ L P
Sbjct: 227 AKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQ 268
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 161 IATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTA 220
I + G D +V + F+ + GH++ +N + SPDG+ S D + ++++
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Query: 221 DKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA 253
+ LS +D V+++++SP+ + A+A
Sbjct: 229 KAMYTLSAQD----EVFSLAFSPNRYWLAAATA 257
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 79/188 (42%), Gaps = 23/188 (12%)
Query: 87 HNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSR 146
HND V + RV+ D D + I++ G+ K +V+A+ + +F GH+
Sbjct: 147 HNDWV--SQVRVVPNEKAD----DDSVTIISAGNDK---MVKAWNLNQFQIEADFIGHNS 197
Query: 147 RVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFK--FKLSHRGHSNFVNCVRFSPDGSKFI 204
+ + P IA+ G+D + + K + LS + V + FSP+ ++
Sbjct: 198 NINTLTASPDGTL-IASAGKDGEIMLWNLAAKKAMYTLSAQDE---VFSLAFSPN--RYW 251
Query: 205 SVSSDKKGI-IYDGKTADKIGELSPE-----DGHKGSVYAVSWSPDGKQVLTASADKSAK 258
++ GI ++ + +L PE + +++WS DG+ + D +
Sbjct: 252 LAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIR 311
Query: 259 VWDISEDN 266
VW + N
Sbjct: 312 VWQVMTAN 319
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 14/163 (8%)
Query: 456 APDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREA 515
A D S II + + K+ V + + EA H ++ + SPD ++ AS + E
Sbjct: 162 ADDDSVTIISAGNDKM-VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Query: 516 IVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEID--------KPA 567
++W+ ++ K L + LA+SPN +A + T + ++ +D +P
Sbjct: 221 MLWNLAAK--KAMYTLSAQDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPE 277
Query: 568 SSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWR-LTPN 609
+ + K A V D ++ + D +RVW+ +T N
Sbjct: 278 FAGYS-KAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 23/146 (15%)
Query: 131 MWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFY--EGPPFKFKLSHRG 186
+WD +G F GH V+S + I + D + + +G L G
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLL---G 146
Query: 187 HSNFVNCVRFSP------DGSKFISVSSDKKGIIYDGKTADKIGELSPED---GHKGSVY 237
H+++V+ VR P D IS +DK ++ + + E GH ++
Sbjct: 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN------LNQFQIEADFIGHNSNIN 200
Query: 238 AVSWSPDGKQVLTASADKSAKVWDIS 263
++ SPDG + +A D +W+++
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWNLA 226
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 93/221 (42%), Gaps = 15/221 (6%)
Query: 139 GEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYE--GPPFKFKL---SHRGHSNFVNC 193
G +GH+ V S A +P + + D + ++ G KF + S +GHS+ V
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 194 VRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA 253
+ DG+ +S S DK ++D T + GHK V +V +++ S
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFV---GHKSDVMSVDIDKKASMIISGSR 127
Query: 254 DKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDL 313
DK+ KVW I G+ TL +V +D V + G + A +L
Sbjct: 128 DKTIKVWTIK----GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183
Query: 314 EKSPLQ--LSGHMKNVTALTVLNIDPKVILSSSYDGLIVKW 352
+ ++ GH N+ LT + D +I S+ DG I+ W
Sbjct: 184 NQFQIEADFIGHNSNINTLTA-SPDGTLIASAGKDGEIMLW 223
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 79/162 (48%), Gaps = 15/162 (9%)
Query: 455 IAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPD-------VSMFA 507
I S I GS+D ++V++I+G L A L H VS +R P+ V++ +
Sbjct: 115 IDKKASMIISGSRDKTIKVWTIKGQCL---ATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 508 SGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPA 567
+G+ ++ W+ +++ + + H + IN L SP+ +++A+ D ++++ + A
Sbjct: 172 AGN-DKMVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL---A 226
Query: 568 SSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRLTPN 609
+ + + V+ LAF+ +++ ++V+ L P
Sbjct: 227 AKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQ 268
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 161 IATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTA 220
I + G D +V + F+ + GH++ +N + SPDG+ S D + ++++
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Query: 221 DKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA 253
+ LS +D V+++++SP+ + A+A
Sbjct: 229 KAMYTLSAQD----EVFSLAFSPNRYWLAAATA 257
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 79/188 (42%), Gaps = 23/188 (12%)
Query: 87 HNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSR 146
HND V + RV+ D D + I++ G+ K +V+A+ + +F GH+
Sbjct: 147 HNDWV--SQVRVVPNEKAD----DDSVTIISAGNDK---MVKAWNLNQFQIEADFIGHNS 197
Query: 147 RVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFK--FKLSHRGHSNFVNCVRFSPDGSKFI 204
+ + P IA+ G+D + + K + LS + V + FSP+ ++
Sbjct: 198 NINTLTASPDGTL-IASAGKDGEIMLWNLAAKKAMYTLSAQDE---VFSLAFSPN--RYW 251
Query: 205 SVSSDKKGI-IYDGKTADKIGELSPE-----DGHKGSVYAVSWSPDGKQVLTASADKSAK 258
++ GI ++ + +L PE + +++WS DG+ + D +
Sbjct: 252 LAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIR 311
Query: 259 VWDISEDN 266
VW + N
Sbjct: 312 VWQVMTAN 319
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 14/163 (8%)
Query: 456 APDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREA 515
A D S II + + K+ V + + EA H ++ + SPD ++ AS + E
Sbjct: 162 ADDDSVTIISAGNDKM-VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Query: 516 IVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEID--------KPA 567
++W+ ++ K L + LA+SPN +A + T + ++ +D +P
Sbjct: 221 MLWNLAAK--KAMYTLSAQDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPE 277
Query: 568 SSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWR-LTPN 609
+ + K A V D ++ + D +RVW+ +T N
Sbjct: 278 FAGYS-KAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 23/146 (15%)
Query: 131 MWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFY--EGPPFKFKLSHRG 186
+WD +G F GH V+S + I + D + + +G L G
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLL---G 146
Query: 187 HSNFVNCVRFSP------DGSKFISVSSDKKGIIYDGKTADKIGELSPED---GHKGSVY 237
H+++V+ VR P D IS +DK ++ + + E GH ++
Sbjct: 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN------LNQFQIEADFIGHNSNIN 200
Query: 238 AVSWSPDGKQVLTASADKSAKVWDIS 263
++ SPDG + +A D +W+++
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLWNLA 226
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 27/177 (15%)
Query: 128 RAFMWDSGTN-----VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKL 182
+ +WD+ +N D H+ V +F P F +AT D V ++ K KL
Sbjct: 251 KLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 310
Query: 183 -SHRGHSNFVNCVRFSPDGSKFISVS-SDKKGIIYDGKTADKIG-ELSPED--------- 230
S H + + V++SP ++ S +D++ ++D KIG E SPED
Sbjct: 311 HSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD---LSKIGEEQSPEDAEDGPPELL 367
Query: 231 ----GHKGSVYAVSWSPDGKQVL-TASADKSAKVWDISED--NHGKLKKTLTPSGSG 280
GH + SW+P+ V+ + S D +VW ++E+ N + ++ P G G
Sbjct: 368 FIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVDPEGQG 424
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/168 (20%), Positives = 78/168 (46%), Gaps = 19/168 (11%)
Query: 461 EAIIGS--QDGKLRVYSIRGDTLTEEA-VLEKHRGAVSVIRYSPDVS-MFASGDVNREAI 516
E++ GS D KL ++ R + ++ + ++ H V+ + ++P + A+G ++
Sbjct: 240 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 299
Query: 517 VWDRVSREVKLKNMLYHTARINCLAWSPNN-SMVATGSLDTCVIIYEIDKPASSR----- 570
+WD + ++KL + H I + WSP+N +++A+ D + ++++ K +
Sbjct: 300 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDA 359
Query: 571 -------MTIKGAHLGGVYGLAFTDEHS--VVSSGEDACVRVWRLTPN 609
+ I G H + ++ + S ED ++VW++ N
Sbjct: 360 EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAEN 407
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 95/235 (40%), Gaps = 32/235 (13%)
Query: 143 GHSRRVLSCAFKPSRPFRIATCGEDFLVNFY-------EGPPFKFKLSHRGHSNFVNCVR 195
GH + ++ P+ + + +D + + EG K GH+ V V
Sbjct: 175 GHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVS 234
Query: 196 FSP-DGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVL-TASA 253
+ S F SV+ D+K +I+D ++ + D H V +S++P + +L T SA
Sbjct: 235 WHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSA 294
Query: 254 DKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGT---ISIF-- 308
DK+ +WD+ LK L S D + W I++ GT ++++
Sbjct: 295 DKTVALWDLR-----NLKLKLHSFESHK--DEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Query: 309 -------SANDLEKSPLQL----SGHMKNVTALTVLNIDPKVILSSSYDGLIVKW 352
S D E P +L GH ++ + +P VI S S D ++ W
Sbjct: 348 SKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVW 402
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 23/137 (16%)
Query: 56 HAYPATVARFSPNGEWI-ASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLR 114
H F+P E+I A+ TV +W N + F I +QWSP
Sbjct: 272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 331
Query: 115 IVACGDGKGKSLVRAFMWDSGTNVGE-----------------FDGHSRRVLSCAFKPSR 157
I+A G + R +WD + +GE GH+ ++ ++ P+
Sbjct: 332 ILASS-GTDR---RLNVWDL-SKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNE 386
Query: 158 PFRIATCGEDFLVNFYE 174
P+ I + ED ++ ++
Sbjct: 387 PWVICSVSEDNIMQVWQ 403
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 57/131 (43%), Gaps = 9/131 (6%)
Query: 137 NVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHR-------GHSN 189
NV GH+ VL A+ P IA+ ED V +E P L R GH+
Sbjct: 73 NVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK 132
Query: 190 FVNCVRFSPDGSK-FISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQV 248
V V + P +S D +++D T + L P D H ++Y+V WS DG +
Sbjct: 133 RVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGP-DVHPDTIYSVDWSRDGALI 191
Query: 249 LTASADKSAKV 259
T+ DK +V
Sbjct: 192 CTSCRDKRVRV 202
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 520 RVSREVKLKNMLYHTARINCLAWSPNN-SMVATGSLDTCVIIYEIDK-----PASSRMTI 573
RV + V L + HTA + +AW P+N +++A+GS D V+++EI P +
Sbjct: 69 RVDKNVPL--VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVIT 126
Query: 574 KGAHLG--GVYGLAFTDEHSVVSSGEDACVRVW 604
H G+ T ++ ++S+G D + VW
Sbjct: 127 LEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVW 159
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 57/131 (43%), Gaps = 9/131 (6%)
Query: 137 NVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHR-------GHSN 189
NV GH+ VL A+ P IA+ ED V +E P L R GH+
Sbjct: 73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK 132
Query: 190 FVNCVRFSPDGSK-FISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQV 248
V V + P +S D +++D T + L P D H ++Y+V WS DG +
Sbjct: 133 RVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP-DVHPDTIYSVDWSRDGALI 191
Query: 249 LTASADKSAKV 259
T+ DK +V
Sbjct: 192 CTSCRDKRVRV 202
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 520 RVSREVKLKNMLYHTARINCLAWSPNN-SMVATGSLDTCVIIYEIDK-----PASSRMTI 573
RV + V L + HTA + +AW P+N +++A+GS D V+++EI P +
Sbjct: 69 RVDKNVPL--VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVIT 126
Query: 574 KGAHLG--GVYGLAFTDEHSVVSSGEDACVRVW 604
H G+ T ++ ++S+G D + VW
Sbjct: 127 LEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVW 159
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 78/168 (46%), Gaps = 19/168 (11%)
Query: 461 EAIIGS--QDGKLRVYSIRGDTLTEEA-VLEKHRGAVSVIRYSPDVS-MFASGDVNREAI 516
E++ GS D KL ++ R + ++ + ++ H V+ + ++P + A+G ++
Sbjct: 248 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 307
Query: 517 VWDRVSREVKLKNMLYHTARINCLAWSPNN-SMVATGSLDTCVIIYEIDKPASSRMT--- 572
+WD + ++KL + H I + WSP+N +++A+ D + ++++ K + T
Sbjct: 308 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 367
Query: 573 ---------IKGAHLGGVYGLAFTDEHS--VVSSGEDACVRVWRLTPN 609
I G H + ++ + S ED ++VW++ N
Sbjct: 368 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 415
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 186 GHSNFVNCVRFSPDGSKFI--SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSP 243
H+ VNC+ F+P S+FI + S+DK ++D + +L + HK ++ V WSP
Sbjct: 279 AHTAEVNCLSFNP-YSEFILATGSADKTVALWDLRNLKL--KLHSFESHKDEIFQVQWSP 335
Query: 244 DGKQVLTAS-ADKSAKVWDISE 264
+ +L +S D+ VWD+S+
Sbjct: 336 HNETILASSGTDRRLHVWDLSK 357
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 24/169 (14%)
Query: 201 SKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVL-TASADKSAKV 259
S F SV+ D+K +I+D + + D H V +S++P + +L T SADK+ +
Sbjct: 249 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 308
Query: 260 WDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGT---ISIF-------- 308
WD+ LK L S D + W I++ GT + ++
Sbjct: 309 WDLR-----NLKLKLHSFESHK--DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 361
Query: 309 -SANDLEKSPLQL----SGHMKNVTALTVLNIDPKVILSSSYDGLIVKW 352
S D E P +L GH ++ + +P +I S S D ++ W
Sbjct: 362 QSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 410
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 23/137 (16%)
Query: 56 HAYPATVARFSPNGEWI-ASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLR 114
H F+P E+I A+ TV +W N + F I +QWSP
Sbjct: 280 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 339
Query: 115 IVACGDGKGKSLVRAFMWDSGTNVGE-----------------FDGHSRRVLSCAFKPSR 157
I+A G + R +WD + +GE GH+ ++ ++ P+
Sbjct: 340 ILASS-GTDR---RLHVWDL-SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 394
Query: 158 PFRIATCGEDFLVNFYE 174
P+ I + ED ++ ++
Sbjct: 395 PWIICSVSEDNIMQVWQ 411
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 66/326 (20%), Positives = 125/326 (38%), Gaps = 38/326 (11%)
Query: 107 QWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGE 166
QW PD V DGK S+ R + GT+ + H +++ PS +
Sbjct: 56 QWLPD----VTKQDGKDYSVHRLIL---GTHTSDEQNH--LLIASVQLPSEDAQFDGSHY 106
Query: 167 DFLVNFYEG-------PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKT 219
D + G + K++H G VN R+ P + I+ + ++ T
Sbjct: 107 DNEKGEFGGFGSVCGKIEIEIKINHEGE---VNRARYMPQNACVIATKTPSSDVLVFDYT 163
Query: 220 A-----DKIGELSPE---DGHKGSVYAVSWSPD-GKQVLTASADKSAKVWDI--SEDNHG 268
+ GE P+ GH+ Y +SW+P+ +L+AS D + +WDI + H
Sbjct: 164 KHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR 223
Query: 269 KLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSA--NDLEKSPLQLSGHMKN 326
+ +G V + + L V+ + I+ N+ K + H
Sbjct: 224 VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE 283
Query: 327 VTALTVLNIDPKVILSSSYDGLIVKW----IQGIGYGGKLQRKENSQIKCFAAIEEEIVT 382
V L+ ++ + S D + W ++ + + + E Q++ E + +
Sbjct: 284 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 343
Query: 383 SGFDNK--IWRVSLQGDQCGYANSID 406
SG D + +W +S G++ ++ D
Sbjct: 344 SGTDRRLHVWDLSKIGEEQSTEDAED 369
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 78/168 (46%), Gaps = 19/168 (11%)
Query: 461 EAIIGS--QDGKLRVYSIRGDTLTEEA-VLEKHRGAVSVIRYSPDVS-MFASGDVNREAI 516
E++ GS D KL ++ R + ++ + ++ H V+ + ++P + A+G ++
Sbjct: 246 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 305
Query: 517 VWDRVSREVKLKNMLYHTARINCLAWSPNN-SMVATGSLDTCVIIYEIDKPASSRMT--- 572
+WD + ++KL + H I + WSP+N +++A+ D + ++++ K + T
Sbjct: 306 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 365
Query: 573 ---------IKGAHLGGVYGLAFTDEHS--VVSSGEDACVRVWRLTPN 609
I G H + ++ + S ED ++VW++ N
Sbjct: 366 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 413
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 186 GHSNFVNCVRFSPDGSKFI--SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSP 243
H+ VNC+ F+P S+FI + S+DK ++D + +L + HK ++ V WSP
Sbjct: 277 AHTAEVNCLSFNP-YSEFILATGSADKTVALWDLRNLKL--KLHSFESHKDEIFQVQWSP 333
Query: 244 DGKQVLTAS-ADKSAKVWDISE 264
+ +L +S D+ VWD+S+
Sbjct: 334 HNETILASSGTDRRLHVWDLSK 355
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 24/169 (14%)
Query: 201 SKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVL-TASADKSAKV 259
S F SV+ D+K +I+D + + D H V +S++P + +L T SADK+ +
Sbjct: 247 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 306
Query: 260 WDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGT---ISIF-------- 308
WD+ LK L S D + W I++ GT + ++
Sbjct: 307 WDLR-----NLKLKLHSFESHK--DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 359
Query: 309 -SANDLEKSPLQL----SGHMKNVTALTVLNIDPKVILSSSYDGLIVKW 352
S D E P +L GH ++ + +P +I S S D ++ W
Sbjct: 360 QSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 408
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 23/137 (16%)
Query: 56 HAYPATVARFSPNGEWI-ASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLR 114
H F+P E+I A+ TV +W N + F I +QWSP
Sbjct: 278 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 337
Query: 115 IVACGDGKGKSLVRAFMWDSGTNVGE-----------------FDGHSRRVLSCAFKPSR 157
I+A G + R +WD + +GE GH+ ++ ++ P+
Sbjct: 338 ILASS-GTDR---RLHVWDL-SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 392
Query: 158 PFRIATCGEDFLVNFYE 174
P+ I + ED ++ ++
Sbjct: 393 PWIICSVSEDNIMQVWQ 409
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 66/326 (20%), Positives = 125/326 (38%), Gaps = 38/326 (11%)
Query: 107 QWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGE 166
QW PD V DGK S+ R + GT+ + H +++ PS +
Sbjct: 54 QWLPD----VTKQDGKDYSVHRLIL---GTHTSDEQNH--LLIASVQLPSEDAQFDGSHY 104
Query: 167 DFLVNFYEG-------PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKT 219
D + G + K++H G VN R+ P + I+ + ++ T
Sbjct: 105 DNEKGEFGGFGSVCGKIEIEIKINHEGE---VNRARYMPQNACVIATKTPSSDVLVFDYT 161
Query: 220 A-----DKIGELSPE---DGHKGSVYAVSWSPD-GKQVLTASADKSAKVWDI--SEDNHG 268
+ GE P+ GH+ Y +SW+P+ +L+AS D + +WDI + H
Sbjct: 162 KHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR 221
Query: 269 KLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSA--NDLEKSPLQLSGHMKN 326
+ +G V + + L V+ + I+ N+ K + H
Sbjct: 222 VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE 281
Query: 327 VTALTVLNIDPKVILSSSYDGLIVKW----IQGIGYGGKLQRKENSQIKCFAAIEEEIVT 382
V L+ ++ + S D + W ++ + + + E Q++ E + +
Sbjct: 282 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 341
Query: 383 SGFDNK--IWRVSLQGDQCGYANSID 406
SG D + +W +S G++ ++ D
Sbjct: 342 SGTDRRLHVWDLSKIGEEQSTEDAED 367
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 78/168 (46%), Gaps = 19/168 (11%)
Query: 461 EAIIGS--QDGKLRVYSIRGDTLTEEA-VLEKHRGAVSVIRYSPDVS-MFASGDVNREAI 516
E++ GS D KL ++ R + ++ + ++ H V+ + ++P + A+G ++
Sbjct: 244 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 303
Query: 517 VWDRVSREVKLKNMLYHTARINCLAWSPNN-SMVATGSLDTCVIIYEIDKPASSRMT--- 572
+WD + ++KL + H I + WSP+N +++A+ D + ++++ K + T
Sbjct: 304 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 363
Query: 573 ---------IKGAHLGGVYGLAFTDEHS--VVSSGEDACVRVWRLTPN 609
I G H + ++ + S ED ++VW++ N
Sbjct: 364 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 186 GHSNFVNCVRFSPDGSKFI--SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSP 243
H+ VNC+ F+P S+FI + S+DK ++D + +L + HK ++ V WSP
Sbjct: 275 AHTAEVNCLSFNP-YSEFILATGSADKTVALWDLRNLKL--KLHSFESHKDEIFQVQWSP 331
Query: 244 DGKQVLTAS-ADKSAKVWDISE 264
+ +L +S D+ VWD+S+
Sbjct: 332 HNETILASSGTDRRLHVWDLSK 353
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 24/169 (14%)
Query: 201 SKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVL-TASADKSAKV 259
S F SV+ D+K +I+D + + D H V +S++P + +L T SADK+ +
Sbjct: 245 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 304
Query: 260 WDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGT---ISIF-------- 308
WD+ LK L S D + W I++ GT + ++
Sbjct: 305 WDLR-----NLKLKLHSFESHK--DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357
Query: 309 -SANDLEKSPLQL----SGHMKNVTALTVLNIDPKVILSSSYDGLIVKW 352
S D E P +L GH ++ + +P +I S S D ++ W
Sbjct: 358 QSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 23/137 (16%)
Query: 56 HAYPATVARFSPNGEWI-ASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLR 114
H F+P E+I A+ TV +W N + F I +QWSP
Sbjct: 276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 335
Query: 115 IVACGDGKGKSLVRAFMWDSGTNVGE-----------------FDGHSRRVLSCAFKPSR 157
I+A G + R +WD + +GE GH+ ++ ++ P+
Sbjct: 336 ILASS-GTDR---RLHVWDL-SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 390
Query: 158 PFRIATCGEDFLVNFYE 174
P+ I + ED ++ ++
Sbjct: 391 PWIICSVSEDNIMQVWQ 407
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 66/326 (20%), Positives = 125/326 (38%), Gaps = 38/326 (11%)
Query: 107 QWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGE 166
QW PD V DGK S+ R + GT+ + H +++ PS +
Sbjct: 52 QWLPD----VTKQDGKDYSVHRLIL---GTHTSDEQNH--LLIASVQLPSEDAQFDGSHY 102
Query: 167 DFLVNFYEG-------PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKT 219
D + G + K++H G VN R+ P + I+ + ++ T
Sbjct: 103 DNEKGEFGGFGSVCGKIEIEIKINHEGE---VNRARYMPQNACVIATKTPSSDVLVFDYT 159
Query: 220 A-----DKIGELSPE---DGHKGSVYAVSWSPD-GKQVLTASADKSAKVWDI--SEDNHG 268
+ GE P+ GH+ Y +SW+P+ +L+AS D + +WDI + H
Sbjct: 160 KHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR 219
Query: 269 KLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSA--NDLEKSPLQLSGHMKN 326
+ +G V + + L V+ + I+ N+ K + H
Sbjct: 220 VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE 279
Query: 327 VTALTVLNIDPKVILSSSYDGLIVKW----IQGIGYGGKLQRKENSQIKCFAAIEEEIVT 382
V L+ ++ + S D + W ++ + + + E Q++ E + +
Sbjct: 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 339
Query: 383 SGFDNK--IWRVSLQGDQCGYANSID 406
SG D + +W +S G++ ++ D
Sbjct: 340 SGTDRRLHVWDLSKIGEEQSTEDAED 365
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/168 (20%), Positives = 78/168 (46%), Gaps = 19/168 (11%)
Query: 461 EAIIGS--QDGKLRVYSIRGDTLTEEA-VLEKHRGAVSVIRYSPDVS-MFASGDVNREAI 516
E++ GS D KL ++ R +T ++ + +++ H V+ + ++P + A+G ++
Sbjct: 242 ESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVA 301
Query: 517 VWDRVSREVKLKNMLYHTARINCLAWSPNNS-MVATGSLDTCVIIYEIDKPASSR----- 570
+WD + ++KL H I + WSP+N ++A+ D + ++++ K +
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDA 361
Query: 571 -------MTIKGAHLGGVYGLAFTDEHS--VVSSGEDACVRVWRLTPN 609
+ I G H + ++ + S ED +++W++ N
Sbjct: 362 EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAEN 409
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 70/160 (43%), Gaps = 25/160 (15%)
Query: 128 RAFMWDSGTNVGE-----FDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKL 182
+ +WD+ +N D H+ V +F P F +AT D V ++ K KL
Sbjct: 253 KLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 312
Query: 183 -SHRGHSNFVNCVRFSPDGSKFISVS-SDKKGIIYDGKTADKIG-ELSPED--------- 230
+ H + + V +SP ++ S +D++ ++D KIG E S ED
Sbjct: 313 HTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD---LSKIGEEQSAEDAEDGPPELL 369
Query: 231 ----GHKGSVYAVSWSPDGKQVL-TASADKSAKVWDISED 265
GH + SW+P+ V+ + S D ++W ++E+
Sbjct: 370 FIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAEN 409
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 23/137 (16%)
Query: 56 HAYPATVARFSPNGEWI-ASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLR 114
H F+P E+I A+ TV +W N + F I + WSP
Sbjct: 274 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNET 333
Query: 115 IVACGDGKGKSLVRAFMWDSGTNVGE-----------------FDGHSRRVLSCAFKPSR 157
I+A G + R +WD + +GE GH+ ++ ++ P+
Sbjct: 334 ILASS-GTDR---RLNVWDL-SKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNE 388
Query: 158 PFRIATCGEDFLVNFYE 174
P+ I + ED ++ ++
Sbjct: 389 PWVICSVSEDNIMQIWQ 405
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 449 PVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFAS 508
P++ A D ++ I + ++ +Y G+ + L++H G V+ I ++PD + +
Sbjct: 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVT 69
Query: 509 GDVNREAIVWDRVSREVKLKNMLYHTAR-INCLAWSPNNSMVATGS 553
+R A VW R K ++ R C+ W+PN A GS
Sbjct: 70 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS 115
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 19/164 (11%)
Query: 450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASG 509
VT APD + + D V++++G T V+ + A +R++P+ FA G
Sbjct: 55 VTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVG 114
Query: 510 DVNRE-AIVWDRVSREVKLKNMLYHTARINCLA--WSPNNSMVATGSLD-TCVI----IY 561
+R +I + + + + R L+ W PN+ ++A GS D C I I
Sbjct: 115 SGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIK 174
Query: 562 EIDK-----PASSRMTI------KGAHLGGVYGLAFTDEHSVVS 594
E+++ P S+M + G V+G+ F+ S V+
Sbjct: 175 EVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA 218
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 191 VNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLT 250
++C ++ D ++ ++ + IY+ K+ +K ++ H G V + W+PD +++T
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYE-KSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVT 69
Query: 251 ASADKSAKVWDI 262
D++A VW +
Sbjct: 70 CGTDRNAYVWTL 81
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 88 NDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMW 132
N V E + +G++ + W+PD RIV CG + A++W
Sbjct: 40 NKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRN-----AYVW 79
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 91/221 (41%), Gaps = 15/221 (6%)
Query: 139 GEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYE--GPPFKFKL---SHRGHSNFVNC 193
G +GH+ V S A +P + + D + ++ G KF + S +GHS+ V
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 194 VRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA 253
+ DG+ +S S DK ++D T + GHK V +V +++ S
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFV---GHKSDVXSVDIDKKASXIISGSR 127
Query: 254 DKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDL 313
DK+ KVW I G+ TL +V +D V + G A +L
Sbjct: 128 DKTIKVWTIK----GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNL 183
Query: 314 EKSPLQ--LSGHMKNVTALTVLNIDPKVILSSSYDGLIVKW 352
+ ++ GH N+ LT + D +I S+ DG I W
Sbjct: 184 NQFQIEADFIGHNSNINTLTA-SPDGTLIASAGKDGEIXLW 223
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 78/162 (48%), Gaps = 15/162 (9%)
Query: 455 IAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPD-------VSMFA 507
I S I GS+D ++V++I+G L A L H VS +R P+ V++ +
Sbjct: 115 IDKKASXIISGSRDKTIKVWTIKGQCL---ATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 508 SGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPA 567
+G+ ++ W+ +++ + + H + IN L SP+ +++A+ D + ++ + A
Sbjct: 172 AGN-DKXVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNL---A 226
Query: 568 SSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRLTPN 609
+ + + V+ LAF+ +++ ++V+ L P
Sbjct: 227 AKKAXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQ 268
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 161 IATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTA 220
I + G D V + F+ + GH++ +N + SPDG+ S D + +++
Sbjct: 169 IISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAK 228
Query: 221 DKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA 253
LS +D V+++++SP+ + A+A
Sbjct: 229 KAXYTLSAQD----EVFSLAFSPNRYWLAAATA 257
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 78/188 (41%), Gaps = 23/188 (12%)
Query: 87 HNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSR 146
HND V + RV+ D D + I++ G+ K V+A+ + +F GH+
Sbjct: 147 HNDWV--SQVRVVPNEKAD----DDSVTIISAGNDK---XVKAWNLNQFQIEADFIGHNS 197
Query: 147 RVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFK--FKLSHRGHSNFVNCVRFSPDGSKFI 204
+ + P IA+ G+D + + K + LS + V + FSP+ ++
Sbjct: 198 NINTLTASPDGTL-IASAGKDGEIXLWNLAAKKAXYTLSAQDE---VFSLAFSPN--RYW 251
Query: 205 SVSSDKKGI-IYDGKTADKIGELSPE-----DGHKGSVYAVSWSPDGKQVLTASADKSAK 258
++ GI ++ + +L PE + +++WS DG+ + D +
Sbjct: 252 LAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIR 311
Query: 259 VWDISEDN 266
VW + N
Sbjct: 312 VWQVXTAN 319
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 15/160 (9%)
Query: 456 APDGSEAIIGS-QDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNRE 514
A D S II + D ++ +++ + EA H ++ + SPD ++ AS + E
Sbjct: 162 ADDDSVTIISAGNDKXVKAWNL--NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGE 219
Query: 515 AIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEID--------KP 566
+W+ ++ K L + LA+SPN +A + T + ++ +D +P
Sbjct: 220 IXLWNLAAK--KAXYTLSAQDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRP 276
Query: 567 ASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRL 606
+ + K A V D ++ + D +RVW++
Sbjct: 277 EFAGYS-KAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 449 PVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFAS 508
P++ A D ++ I + ++ +Y G+ + L++H G V+ + ++PD + +
Sbjct: 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 69
Query: 509 GDVNREAIVWDRVSREVKLKNMLYHTAR-INCLAWSPNNSMVATGS 553
+R A VW R K ++ R C+ W+PN A GS
Sbjct: 70 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS 115
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 19/164 (11%)
Query: 450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASG 509
VT APD + + D V++++G T V+ + A +R++P+ FA G
Sbjct: 55 VTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVG 114
Query: 510 DVNRE-AIVWDRVSREVKLKNMLYHTARINCLA--WSPNNSMVATGSLD-TCVI----IY 561
+R +I + + + + R L+ W PN+ ++A GS D C I I
Sbjct: 115 SGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIK 174
Query: 562 EIDK-----PASSRMTI------KGAHLGGVYGLAFTDEHSVVS 594
E+++ P S+M + G V+G+ F+ S V+
Sbjct: 175 EVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA 218
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 191 VNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLT 250
++C ++ D ++ ++ + IY+ K+ +K ++ H G V V W+PD +++T
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYE-KSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 69
Query: 251 ASADKSAKVWDI 262
D++A VW +
Sbjct: 70 CGTDRNAYVWTL 81
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 88 NDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMW 132
N V E + +G++ + W+PD RIV CG + A++W
Sbjct: 40 NKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRN-----AYVW 79
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 110/246 (44%), Gaps = 32/246 (13%)
Query: 380 IVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVL----- 434
IV++ D I L D Y G + L+ H+ E V++S+D L
Sbjct: 398 IVSASRDKSIILWKLTKDDKAY------GVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD 451
Query: 435 --LRGAEVVSTINLRF------PVTASAIAPDGSEAIIGSQDGKLRVYSIRGD---TLTE 483
LR ++ + ++ R V + A + D + + S+D +++++ G+ T++E
Sbjct: 452 GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISE 511
Query: 484 EAVLEKHRGAVSVIRYSPDV--SMFASGDVNREAIVWDRVSREVKLKNMLY-HTARINCL 540
E HR VS +R+SP+ S ++ VW+ KL++ L HT ++ +
Sbjct: 512 GG--EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL--SNCKLRSTLAGHTGYVSTV 567
Query: 541 AWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDAC 600
A SP+ S+ A+G D V+++++ A + ++ L F+ + + +
Sbjct: 568 AVSPDGSLCASGGKDGVVLLWDL---AEGKKLYSLEANSVIHALCFSPNRYWLCAATEHG 624
Query: 601 VRVWRL 606
+++W L
Sbjct: 625 IKIWDL 630
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 93/197 (47%), Gaps = 21/197 (10%)
Query: 186 GHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDG 245
GHS+FV V S DG +S S D + ++D GH V +V++S D
Sbjct: 428 GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV---GHTKDVLSVAFSLDN 484
Query: 246 KQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL-----WQNDFLVIVS 300
+Q+++AS D++ K+W + G+ K T++ G G D V C+ +V S
Sbjct: 485 RQIVSASRDRTIKLW----NTLGECKYTISEGGEGHRD--WVSCVRFSPNTLQPTIVSAS 538
Query: 301 LGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGG 360
T+ +++ ++ K L+GH V+ + V + D + S DG+++ W + G
Sbjct: 539 WDKTVKVWNLSNC-KLRSTLAGHTGYVSTVAV-SPDGSLCASGGKDGVVLLW--DLAEGK 594
Query: 361 KLQRKE-NSQIK--CFA 374
KL E NS I CF+
Sbjct: 595 KLYSLEANSVIHALCFS 611
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 8/123 (6%)
Query: 142 DGHSRRVLSCAFKPS--RPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPD 199
+GH V F P+ +P I + D V + K + + GH+ +V+ V SPD
Sbjct: 514 EGHRDWVSCVRFSPNTLQP-TIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPD 572
Query: 200 GSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKV 259
GS S D +++D K+ L ++A+ +SP+ + L A+ + K+
Sbjct: 573 GSLCASGGKDGVVLLWDLAEGKKLYSLEA----NSVIHALCFSPN-RYWLCAATEHGIKI 627
Query: 260 WDI 262
WD+
Sbjct: 628 WDL 630
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 9/166 (5%)
Query: 450 VTASAIAPDGSEAII-GSQDGKLRVYSIRGDTLT---EEAVLEKHRGAVSVIRYSPDVSM 505
VTA A D ++ I+ S+D + ++ + D + L H V + S D
Sbjct: 385 VTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQF 444
Query: 506 FASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDK 565
SG + E +WD ++ V + + HT + +A+S +N + + S D + ++
Sbjct: 445 ALSGSWDGELRLWD-LAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLG 503
Query: 566 PASSRMTIKG-AHLGGVYGLAF---TDEHSVVSSGEDACVRVWRLT 607
++ G H V + F T + ++VS+ D V+VW L+
Sbjct: 504 ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS 549
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 79/159 (49%), Gaps = 20/159 (12%)
Query: 248 VLTASADKSAKVWDISEDN--HGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTI 305
+++AS DKS +W +++D+ +G ++ LT S V+D+++ F + S G +
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLT-GHSHFVEDVVLSS--DGQFALSGSWDGEL 454
Query: 306 SIFSANDLEK--SPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKW------IQGIG 357
++ DL S + GH K+V ++ ++D + I+S+S D I W I
Sbjct: 455 RLW---DLAAGVSTRRFVGHTKDVLSV-AFSLDNRQIVSASRDRTIKLWNTLGECKYTIS 510
Query: 358 YGGKLQRKENSQIKCFA-AIEEEIVTSGFDN--KIWRVS 393
GG+ R S ++ ++ IV++ +D K+W +S
Sbjct: 511 EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS 549
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 96/221 (43%), Gaps = 25/221 (11%)
Query: 57 AYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDD---LQWSPDGL 113
++ A V S N ++S SG + H+ V + LSG + L+W+PDG
Sbjct: 107 SHSARVGSLSWNSYILSSGSRSGHIH---HHDVRVAEHHVATLSGHSQEVCGLRWAPDGR 163
Query: 114 RIVACGDGKGKSLVRAFMWDSGTNVG------EFDGHSRRVLSCAFKPSRPFRIATCG-- 165
+ + G+ +LV +W S G F H V + A+ P + +AT G
Sbjct: 164 HLASGGN---DNLVN--VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT 218
Query: 166 EDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVS--SDKKGIIYDGKTADKI 223
D + + + HS V + +SP + IS + + +I+ T K+
Sbjct: 219 SDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV 277
Query: 224 GELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE 264
EL GH V +++ SPDG V +A+AD++ ++W E
Sbjct: 278 AEL---KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 68/168 (40%), Gaps = 9/168 (5%)
Query: 49 QVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGA---HNDHVLKKEFRVLSGRIDD 105
V+ H+ R++P+G +AS V +W + V + F G +
Sbjct: 142 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 201
Query: 106 LQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCG 165
+ W P ++A G G +R + SG + D HS+ C+ S ++ G
Sbjct: 202 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ---VCSILWSPHYKELISG 258
Query: 166 EDFLVN---FYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDK 210
F N ++ P +GH++ V + SPDG+ S ++D+
Sbjct: 259 HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE 306
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Query: 468 DGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKL 527
D + ++S + + +E+ +S + + + + A G + E +WD V ++ +L
Sbjct: 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWD-VQQQKRL 102
Query: 528 KNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT 587
+NM H+AR+ L+W N+ ++++GS + +++ T+ G H V GL +
Sbjct: 103 RNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSG-HSQEVCGLRWA 159
Query: 588 -DEHSVVSSGEDACVRVWRLTP 608
D + S G D V VW P
Sbjct: 160 PDGRHLASGGNDNLVNVWPSAP 181
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 70/344 (20%), Positives = 132/344 (38%), Gaps = 56/344 (16%)
Query: 150 SCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSD 209
+C + PS P RI E + N Y ++N V +S ++V+ D
Sbjct: 5 TCRYIPSLPDRILDAPE--IRNDY----------------YLNLVDWS--SGNVLAVALD 44
Query: 210 KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGK 269
++ + D + L E + + +V+W +G + ++ ++WD+ + +
Sbjct: 45 NSVYLWSASSGDILQLLQMEQPGE-YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK--R 101
Query: 270 LKKTLTPSGSGGVDDMLVGCL-WQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVT 328
L+ + S VG L W + L S G I E LSGH + V
Sbjct: 102 LRNMTSHSAR-------VGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVC 154
Query: 329 ALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIK------CFAAIEEEIVT 382
L D + + S D L+ W G GG + + +Q + + + ++
Sbjct: 155 GLR-WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA 213
Query: 383 SGFDN-----KIWRVSLQGDQCGYA--NSIDIGSQPKDLSVALHYPELVLVS--TDSGVV 433
+G +IW V C A +++D SQ + + HY EL+ + +V
Sbjct: 214 TGGGTSDRHIRIWNV------CSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLV 267
Query: 434 LLRGAEVVSTINLR---FPVTASAIAPDGSEAIIGSQDGKLRVY 474
+ + + L+ V + ++PDG+ + D LR++
Sbjct: 268 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 465 GSQDGKLRVYSI-RGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGD--VNREAIVWDRV 521
G+ D +R++++ G L+ ++ H S++ +SP SG + ++W +
Sbjct: 217 GTSDRHIRIWNVCSGACLS---AVDAHSQVCSIL-WSPHYKELISGHGFAQNQLVIW-KY 271
Query: 522 SREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYE 562
K+ + HT+R+ L SP+ + VA+ + D + ++
Sbjct: 272 PTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 91/215 (42%), Gaps = 23/215 (10%)
Query: 188 SNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQ 247
S V C+++ D K +S D I+D T + L+ GH GSV + + D +
Sbjct: 133 SKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILT---GHTGSVLCLQY--DERV 185
Query: 248 VLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISI 307
++T S+D + +VWD+ N G++ TL ++ + N +V S +I++
Sbjct: 186 IITGSSDSTVRVWDV---NTGEMLNTLIHHCEA-----VLHLRFNNGMMVTCSKDRSIAV 237
Query: 308 FSANDLEKSPLQ--LSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRK 365
+ L+ L GH A+ V++ D K I+S+S D I W +
Sbjct: 238 WDMASPTDITLRRVLVGHR---AAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG 294
Query: 366 ENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCG 400
I C + +V+ DN I L +CG
Sbjct: 295 HKRGIACLQYRDRLVVSGSSDNTI---RLWDIECG 326
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 46/262 (17%)
Query: 364 RKENSQ-IKCFAAIEEEIVTSGFDN--KIW-RVSLQGDQ--CGYANSIDIGSQPKDLSVA 417
R E S+ + C +++IV+ DN KIW + +L+ + G+ S+ +
Sbjct: 129 RSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV----------LC 178
Query: 418 LHYPELVLV--STDSGVVL--LRGAEVVSTI--------NLRFPVTASAIAPDGSEAIIG 465
L Y E V++ S+DS V + + E+++T+ +LRF + +
Sbjct: 179 LQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF---------NNGMMVTC 229
Query: 466 SQDGKLRVYSIRGDT-LTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSRE 524
S+D + V+ + T +T VL HR AV+V+ + + ASGD R VW+ + E
Sbjct: 230 SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGD--RTIKVWNTSTCE 287
Query: 525 VKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGL 584
++ + H I CL + + +V +GS D + +++I+ A R + H V +
Sbjct: 288 F-VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLR--VLEGHEELVRCI 342
Query: 585 AFTDEHSVVSSGEDACVRVWRL 606
F D +VS D ++VW L
Sbjct: 343 RF-DNKRIVSGAYDGKIKVWDL 363
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 95/225 (42%), Gaps = 18/225 (8%)
Query: 166 EDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGE 225
D + ++ + K GH+ V C+++ D I+ SSD ++D T + +
Sbjct: 151 RDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNT 208
Query: 226 LSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSG-GVDD 284
L H +V + + + ++T S D+S VWD++ L++ L + V D
Sbjct: 209 LI---HHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVD 263
Query: 285 MLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSS 344
+ ++V S TI +++ + E L+GH + + L + ++++S S
Sbjct: 264 F------DDKYIVSASGDRTIKVWNTSTCEFVR-TLNGHKRGIACLQYRD---RLVVSGS 313
Query: 345 YDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKI 389
D I W G ++ ++C + IV+ +D KI
Sbjct: 314 SDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKI 358
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 24/105 (22%)
Query: 186 GHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTA--DKIGELSPED-----------GH 232
GH V C+RF D + +S + YDGK D + L P H
Sbjct: 334 GHEELVRCIRF--DNKRIVSGA-------YDGKIKVWDLVAALDPRAPAGTLCLRTLVEH 384
Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPS 277
G V+ + + D Q++++S D + +WD D + + +PS
Sbjct: 385 SGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPS 427
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/168 (20%), Positives = 76/168 (45%), Gaps = 19/168 (11%)
Query: 461 EAIIGS--QDGKLRVYSIRGDTLTEEA-VLEKHRGAVSVIRYSPDVS-MFASGDVNREAI 516
E++ GS D KL ++ R +T ++ + +++ H V+ + ++P + A+G ++
Sbjct: 242 ESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVA 301
Query: 517 VWDRVSREVKLKNMLYHTARINCLAWSPNNS-MVATGSLDTCVIIYEIDKPASSR----- 570
+WD + ++KL H I + WSP+N ++A+ D + ++++ K +
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDA 361
Query: 571 -------MTIKGAHLGGVYGLAFTDEHS--VVSSGEDACVRVWRLTPN 609
+ I G H + ++ + S ED ++W+ N
Sbjct: 362 EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQXAEN 409
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 25/157 (15%)
Query: 131 MWDSGTNVGE-----FDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKL-SH 184
+WD+ +N D H+ V +F P F +AT D V ++ K KL +
Sbjct: 256 IWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTF 315
Query: 185 RGHSNFVNCVRFSPDGSKFISVS-SDKKGIIYDGKTADKIG-ELSPED------------ 230
H + + V +SP ++ S +D++ ++D KIG E S ED
Sbjct: 316 ESHKDEIFQVHWSPHNETILASSGTDRRLNVWD---LSKIGEEQSAEDAEDGPPELLFIH 372
Query: 231 -GHKGSVYAVSWSPDGKQVL-TASADKSAKVWDISED 265
GH + SW+P+ V+ + S D ++W +E+
Sbjct: 373 GGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQXAEN 409
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 52/137 (37%), Gaps = 23/137 (16%)
Query: 56 HAYPATVARFSPNGEWI-ASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLR 114
H F+P E+I A+ TV +W N + F I + WSP
Sbjct: 274 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNET 333
Query: 115 IVACGDGKGKSLVRAFMWDSGTNVGE-----------------FDGHSRRVLSCAFKPSR 157
I+A G + R +WD + +GE GH+ ++ ++ P+
Sbjct: 334 ILASS-GTDR---RLNVWDL-SKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNE 388
Query: 158 PFRIATCGEDFLVNFYE 174
P+ I + ED + ++
Sbjct: 389 PWVICSVSEDNIXQIWQ 405
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 96/221 (43%), Gaps = 25/221 (11%)
Query: 57 AYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDD---LQWSPDGL 113
++ A V S N ++S SG + H+ V + LSG + L+W+PDG
Sbjct: 187 SHSARVGSLSWNSYILSSGSRSGHIH---HHDVRVAEHHVATLSGHSQEVCGLRWAPDGR 243
Query: 114 RIVACGDGKGKSLVRAFMWDSGTNVG------EFDGHSRRVLSCAFKPSRPFRIATCG-- 165
+ + G+ +LV +W S G F H V + A+ P + +AT G
Sbjct: 244 HLASGGN---DNLVN--VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT 298
Query: 166 EDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVS--SDKKGIIYDGKTADKI 223
D + + + HS V + +SP + IS + + +I+ T K+
Sbjct: 299 SDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV 357
Query: 224 GELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE 264
EL GH V +++ SPDG V +A+AD++ ++W E
Sbjct: 358 AEL---KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Query: 468 DGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKL 527
D + ++S + + +E+ +S + + + + A G + E +WD V ++ +L
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWD-VQQQKRL 182
Query: 528 KNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT 587
+NM H+AR+ L+W N+ ++++GS + +++ T+ G H V GL +
Sbjct: 183 RNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSG-HSQEVCGLRWA 239
Query: 588 -DEHSVVSSGEDACVRVWRLTP 608
D + S G D V VW P
Sbjct: 240 PDGRHLASGGNDNLVNVWPSAP 261
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 9/168 (5%)
Query: 49 QVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGA---HNDHVLKKEFRVLSGRIDD 105
V+ H+ R++P+G +AS V +W + V + F G +
Sbjct: 222 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 281
Query: 106 LQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCG 165
+ W P ++A G G +R + SG + D HS +V S + P ++ G
Sbjct: 282 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPH--YKELISG 338
Query: 166 EDFLVN---FYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDK 210
F N ++ P +GH++ V + SPDG+ S ++D+
Sbjct: 339 HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE 386
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 73/351 (20%), Positives = 136/351 (38%), Gaps = 58/351 (16%)
Query: 143 GHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSK 202
G SR+ +C + PS P RI E + N Y ++N V +S
Sbjct: 80 GSSRK--TCRYIPSLPDRILDAPE--IRNDY----------------YLNLVDWS--SGN 117
Query: 203 FISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDI 262
++V+ D ++ + D + L E + + +V+W +G + ++ ++WD+
Sbjct: 118 VLAVALDNSVYLWSASSGDILQLLQMEQPGE-YISSVAWIKEGNYLAVGTSSAEVQLWDV 176
Query: 263 SEDNHGKLKKTLTPSGSGGVDDMLVGCL-WQNDFLVIVSLGGTISIFSANDLEKSPLQLS 321
+ +L+ + S VG L W + L S G I E LS
Sbjct: 177 QQQK--RLRNMTSHSAR-------VGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS 227
Query: 322 GHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIK------CFAA 375
GH + V L D + + S D L+ W G GG + + +Q + +
Sbjct: 228 GHSQEVCGLR-WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 286
Query: 376 IEEEIVTSGFDN-----KIWRVSLQGDQCGYA--NSIDIGSQPKDLSVALHYPELVLVS- 427
+ ++ +G +IW V C A +++D SQ + + HY EL+
Sbjct: 287 WQSNVLATGGGTSDRHIRIWNV------CSGACLSAVDAHSQVCSILWSPHYKELISGHG 340
Query: 428 -TDSGVVLLRGAEVVSTINLR---FPVTASAIAPDGSEAIIGSQDGKLRVY 474
+ +V+ + + L+ V + ++PDG+ + D LR++
Sbjct: 341 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 465 GSQDGKLRVYSI-RGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGD--VNREAIVWDRV 521
G+ D +R++++ G L+ ++ H S++ +SP SG + ++W +
Sbjct: 297 GTSDRHIRIWNVCSGACLS---AVDAHSQVCSIL-WSPHYKELISGHGFAQNQLVIW-KY 351
Query: 522 SREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVII---YEIDKPASSRMTIKGA 576
K+ + HT+R+ L SP+ + VA+ + D + + +E+D PA R K +
Sbjct: 352 PTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD-PARRREREKAS 408
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 96/221 (43%), Gaps = 25/221 (11%)
Query: 57 AYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDD---LQWSPDGL 113
++ A V S N ++S SG + H+ V + LSG + L+W+PDG
Sbjct: 198 SHSARVGSLSWNSYILSSGSRSGHIH---HHDVRVAEHHVATLSGHSQEVCGLRWAPDGR 254
Query: 114 RIVACGDGKGKSLVRAFMWDSGTNVG------EFDGHSRRVLSCAFKPSRPFRIATCG-- 165
+ + G+ +LV +W S G F H V + A+ P + +AT G
Sbjct: 255 HLASGGN---DNLVN--VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT 309
Query: 166 EDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVS--SDKKGIIYDGKTADKI 223
D + + + HS V + +SP + IS + + +I+ T K+
Sbjct: 310 SDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV 368
Query: 224 GELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE 264
EL GH V +++ SPDG V +A+AD++ ++W E
Sbjct: 369 AEL---KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 406
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Query: 468 DGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKL 527
D + ++S + + +E+ +S + + + + A G + E +WD V ++ +L
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWD-VQQQKRL 193
Query: 528 KNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT 587
+NM H+AR+ L+W N+ ++++GS + +++ T+ G H V GL +
Sbjct: 194 RNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSG-HSQEVCGLRWA 250
Query: 588 -DEHSVVSSGEDACVRVWRLTP 608
D + S G D V VW P
Sbjct: 251 PDGRHLASGGNDNLVNVWPSAP 272
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 9/168 (5%)
Query: 49 QVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGA---HNDHVLKKEFRVLSGRIDD 105
V+ H+ R++P+G +AS V +W + V + F G +
Sbjct: 233 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 292
Query: 106 LQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCG 165
+ W P ++A G G +R + SG + D HS +V S + P ++ G
Sbjct: 293 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPH--YKELISG 349
Query: 166 EDFLVN---FYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDK 210
F N ++ P +GH++ V + SPDG+ S ++D+
Sbjct: 350 HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE 397
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 73/351 (20%), Positives = 136/351 (38%), Gaps = 58/351 (16%)
Query: 143 GHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSK 202
G SR+ +C + PS P RI E + N Y ++N V +S
Sbjct: 91 GSSRK--TCRYIPSLPDRILDAPE--IRNDY----------------YLNLVDWS--SGN 128
Query: 203 FISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDI 262
++V+ D ++ + D + L E + + +V+W +G + ++ ++WD+
Sbjct: 129 VLAVALDNSVYLWSASSGDILQLLQMEQPGE-YISSVAWIKEGNYLAVGTSSAEVQLWDV 187
Query: 263 SEDNHGKLKKTLTPSGSGGVDDMLVGCL-WQNDFLVIVSLGGTISIFSANDLEKSPLQLS 321
+ +L+ + S VG L W + L S G I E LS
Sbjct: 188 QQQK--RLRNMTSHSAR-------VGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS 238
Query: 322 GHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIK------CFAA 375
GH + V L D + + S D L+ W G GG + + +Q + +
Sbjct: 239 GHSQEVCGLR-WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 297
Query: 376 IEEEIVTSGFDN-----KIWRVSLQGDQCGYA--NSIDIGSQPKDLSVALHYPELVLVS- 427
+ ++ +G +IW V C A +++D SQ + + HY EL+
Sbjct: 298 WQSNVLATGGGTSDRHIRIWNV------CSGACLSAVDAHSQVCSILWSPHYKELISGHG 351
Query: 428 -TDSGVVLLRGAEVVSTINLR---FPVTASAIAPDGSEAIIGSQDGKLRVY 474
+ +V+ + + L+ V + ++PDG+ + D LR++
Sbjct: 352 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 465 GSQDGKLRVYSI-RGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGD--VNREAIVWDRV 521
G+ D +R++++ G L+ ++ H S++ +SP SG + ++W +
Sbjct: 308 GTSDRHIRIWNVCSGACLS---AVDAHSQVCSIL-WSPHYKELISGHGFAQNQLVIW-KY 362
Query: 522 SREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVII---YEIDKPASSRMTIKGA 576
K+ + HT+R+ L SP+ + VA+ + D + + +E+D PA R K +
Sbjct: 363 PTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD-PARRREREKAS 419
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query: 473 VYSIRGDTLTEEAVLEKHRGA-VSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNML 531
VY D+ + A+ E V+ +++S D S + G N ++D V + KL+ M
Sbjct: 115 VYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYD-VESQTKLRTMA 173
Query: 532 YHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAF-TDEH 590
H AR+ CL+W N ++++GS + +++ T++G H V GLA+ +D
Sbjct: 174 GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQG-HSSEVCGLAWRSDGL 230
Query: 591 SVVSSGEDACVRVW 604
+ S G D V++W
Sbjct: 231 QLASGGNDNVVQIW 244
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 113/252 (44%), Gaps = 23/252 (9%)
Query: 39 VIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRV 98
V I D+ + ++ H A V S N ++S SG + H+ + +
Sbjct: 158 VDIYDVESQTKLRTMAGHQ--ARVGCLSWNRHVLSSGSRSGAIH---HHDVRIANHQIGT 212
Query: 99 LSGRIDD---LQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFD--GHSRRVLSCAF 153
L G + L W DGL++ + G+ ++V+ +WD+ +++ +F H+ V + A+
Sbjct: 213 LQGHSSEVCGLAWRSDGLQLASGGN---DNVVQ--IWDARSSIPKFTKTNHNAAVKAVAW 267
Query: 154 KPSRPFRIATCG--EDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSS--D 209
P + +AT G D ++F+ +++ + V + +SP + +S D
Sbjct: 268 CPWQSNLLATGGGTMDKQIHFWNAAT-GARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPD 326
Query: 210 KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGK 269
I+ ++ ++ H V + SPDG+ + TA++D++ K W + + +H K
Sbjct: 327 NNLSIWSYSSSGLTKQVDIP-AHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVK 385
Query: 270 --LKKTLTPSGS 279
+ T TPS S
Sbjct: 386 RPIPITKTPSSS 397
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 99/232 (42%), Gaps = 15/232 (6%)
Query: 52 IYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQW-SP 110
I+ + + +TV + + + S T+R+W L VL G + ++
Sbjct: 192 IHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL----HVLMGHVAAVRCVQY 247
Query: 111 DGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLV 170
DG R+V+ G +V+ + ++ T + GH+ RV S F + + D +
Sbjct: 248 DGRRVVS---GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG---IHVVSGSLDTSI 301
Query: 171 NFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPED 230
++ + GH + + + + +S ++D I+D KT + L +
Sbjct: 302 RVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPN 359
Query: 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGV 282
H+ +V + ++ + V+T+S D + K+WD+ + TL GSGGV
Sbjct: 360 KHQSAVTCLQFNKNF--VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 409
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 12/155 (7%)
Query: 451 TASAIAPDGSEAIIGSQDGKLRVYSIR-GDTLTEEAVLEKHRGAVSVIRYSPDVSMFASG 509
T + + GS+D LRV+ I G L VL H AV ++Y D SG
Sbjct: 201 TVRCMHLHEKRVVSGSRDATLRVWDIETGQCL---HVLMGHVAAVRCVQY--DGRRVVSG 255
Query: 510 DVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASS 569
+ VWD + E L + HT R+ L + + V +GSLDT + +++++ +
Sbjct: 256 AYDFMVKVWDPET-ETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVE-TGNC 311
Query: 570 RMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVW 604
T+ G H G+ D + +VS D+ V++W
Sbjct: 312 IHTLTG-HQSLTSGMELKD-NILVSGNADSTVKIW 344
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 172 FYEGPPFK-FKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPED 230
+++G K KL+ GH + V+++ +G S S D ++ +++G L D
Sbjct: 17 YFQGSHMKAIKLT--GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL---D 71
Query: 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS 263
GH G+++++ K +T SAD S K+WD+S
Sbjct: 72 GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS 104
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/173 (20%), Positives = 64/173 (36%), Gaps = 11/173 (6%)
Query: 47 PLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDL 106
P+ I E ATVA +S G++I + G + + N++ + I D+
Sbjct: 165 PIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDM 224
Query: 107 QWSPDGLRIVACGDGKGKSLV--------RAFMWDSGTNVGEFDGHSRRVLSCAFKPSRP 158
Q+SPD + LV + + D N ++ + ++
Sbjct: 225 QFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKD 284
Query: 159 FRIATCGE-DFLVNFYEGPPFKFKLSH-RGHSNFVNCVRFSPDGSKFISVSSD 209
+ E F FY F+ ++ +GH +N V SP G+ + S D
Sbjct: 285 VTTTSANEGKFEARFYH-KIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGED 336
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 217 GKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTP 276
G+T K ++ H G V V WS DG +V TAS DK+AK+WD+S + ++ + P
Sbjct: 75 GQTIPKAQQM-----HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAP 129
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 459 GSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVW 518
G+ I GS +R + ++ T + H G V + +S D S + ++ A +W
Sbjct: 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 113
Query: 519 DRVSREVKLKNMLYHTARINCLAW--SPNNSMVATGSLDTCVIIYE 562
D S + + H A + + W +PN S V TGS D + ++
Sbjct: 114 DLSSNQA--IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD 157
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 10/88 (11%)
Query: 183 SHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYD--GKTADKIGELSPEDGHKGSVYAVS 240
+ + H+ V V +S DGSK + S DK ++D A +I + H V +
Sbjct: 81 AQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ------HDAPVKTIH 134
Query: 241 W--SPDGKQVLTASADKSAKVWDISEDN 266
W +P+ V+T S DK+ K WD N
Sbjct: 135 WIKAPNYSCVMTGSWDKTLKFWDTRSSN 162
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 70/356 (19%), Positives = 128/356 (35%), Gaps = 71/356 (19%)
Query: 178 FKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVY 237
K + + +GH N V C+ + D + +S S D K I++D T +K ++ V
Sbjct: 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMP---CTWVM 110
Query: 238 AVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLV 297
A +++P G + D V+ ++ D +
Sbjct: 111 ACAYAPSGCAIACGGLDNKCSVYPLTFDKN------------------------------ 140
Query: 298 IVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIG 357
++ ++ H ++A + N D + IL++S DG W +
Sbjct: 141 -------------ENMAAKKKSVAMHTNYLSACSFTNSDMQ-ILTASGDGTCALW--DVE 184
Query: 358 YGGKLQ--RKENSQIKCFAAIEEE----IVTSGFDNKIWRVSLQGDQCGYANSIDIGSQP 411
G LQ + + C E V+ G D K ++ QC A +
Sbjct: 185 SGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQA----FETHE 240
Query: 412 KDLSVALHYP--ELVLVSTDSGVVLL------RGAEVVSTINLRFPVTASAIAPDGSEAI 463
D++ +YP + +D L R + S ++ F ++ + G
Sbjct: 241 SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLF 300
Query: 464 IGSQDGKLRVYSI-RGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVW 518
G D + V+ + +G ++ +L H VS +R SPD + F SG + VW
Sbjct: 301 AGYNDYTINVWDVLKGSRVS---ILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/319 (22%), Positives = 123/319 (38%), Gaps = 49/319 (15%)
Query: 315 KSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKC-- 372
K+ L GH V + D + I+SSS DG ++ W ++ + C
Sbjct: 55 KTRRTLKGHGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFT-----TNKEHAVTMPCTW 108
Query: 373 -----FAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPEL---- 423
+A I G DNK L D+ + K SVA+H L
Sbjct: 109 VMACAYAPSGCAIACGGLDNKCSVYPLTFDK-------NENMAAKKKSVAMHTNYLSACS 161
Query: 424 -------VLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPD------GSEAIIGSQDGK 470
+L ++ G L E + A + D G+ + G D K
Sbjct: 162 FTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKK 221
Query: 471 LRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWD-RVSREVKL-- 527
V+ +R + E H V+ +RY P FASG + ++D R REV +
Sbjct: 222 AMVWDMRSGQCVQ--AFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYS 279
Query: 528 -KNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAF 586
+++++ + ++ +S + ++ G D + ++++ K SR++I H V L
Sbjct: 280 KESIIFGASSVD---FSLSGRLLFAGYNDYTINVWDVLK--GSRVSILFGHENRVSTLRV 334
Query: 587 TDEHSVVSSGE-DACVRVW 604
+ + + SG D +RVW
Sbjct: 335 SPDGTAFCSGSWDHTLRVW 353
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 88/216 (40%), Gaps = 24/216 (11%)
Query: 65 FSPNGEWIASADVSGTVRIWG----AHNDHVLKKEFRVLSGR---IDDLQWSPDGLRIVA 117
F+PNG+ +A + I+ A D + RVL+G Q+ PD +
Sbjct: 116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVS-RVLTGHKGYASSCQYVPDQETRLI 174
Query: 118 CGDGKGKSLVRAFMWD--SGTNVGEF-----DGHSRRVLSCAFKPSRPFRIATCGEDFLV 170
G G + +WD +G + F GH+ VLS + + D V
Sbjct: 175 TGSGDQTCV----LWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTV 230
Query: 171 NFYE-GPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPE 229
++ + ++ GH +N V+F PDG +F + S D ++D +T ++ + E
Sbjct: 231 RLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNRE 290
Query: 230 ----DGHKGSVYAVSWSPDGKQVLTASADKSAKVWD 261
D V +V++S G+ + ++ VWD
Sbjct: 291 PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWD 326
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 12/115 (10%)
Query: 457 PDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRG-----AVSVIRYSPDVSMFASGDV 511
PDG GS DG R++ +R + E R V+ + +S + +G
Sbjct: 259 PDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS 318
Query: 512 NREAIVWDRVSREV-----KLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIY 561
N + VWD + E+ L+N H RI+CL S + S + TGS D + I+
Sbjct: 319 NGDCYVWDTLLAEMVLNLGTLQNS--HEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 99/242 (40%), Gaps = 21/242 (8%)
Query: 35 NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGA---HNDHV 91
GR+ + + ++ + H+ ++P WI SA G + +W A H
Sbjct: 44 QGRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHA 103
Query: 92 LKKEFRVLSGRIDDLQWSPDGLRIVACG--DGKGKSLVRAFMWDSGTNV---GEFDGHSR 146
+K + + + ++P+G + VACG D + D N+ GH
Sbjct: 104 IK----LHCPWVMECAFAPNG-QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKG 158
Query: 147 RVLSCAFKPSRPFRIATCGED---FLVNFYEGPPFKFKLSH--RGHSNFVNCVRF-SPDG 200
SC + P + R+ T D L + G S GH+ V + S +
Sbjct: 159 YASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNA 218
Query: 201 SKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVW 260
+ FIS S D ++D + + + GH+G + +V + PDG++ T S D + +++
Sbjct: 219 NMFISGSCDTTVRLWDLRITSR--AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLF 276
Query: 261 DI 262
D+
Sbjct: 277 DM 278
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 92/235 (39%), Gaps = 48/235 (20%)
Query: 37 RSVIILDLSNPLQVSIYGEHAYPA-------TVARFSPNGEWIASADVSGTVRIWGAHND 89
++ ++ D++ ++SI+G +P+ +++ S N S TVR+W
Sbjct: 180 QTCVLWDVTTGQRISIFGSE-FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT 238
Query: 90 HVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVL 149
+ + G I+ +++ PDG R G G R F D T GH +V
Sbjct: 239 SRAVRTYHGHEGDINSVKFFPDGQRF---GTGSDDGTCRLF--DMRT------GHQLQVY 287
Query: 150 SCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSD 209
+ +P R N E P V V FS G + S+
Sbjct: 288 N--REPDR-------------NDNELP-------------IVTSVAFSISGRLLFAGYSN 319
Query: 210 KKGIIYDGKTADKIGEL-SPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS 263
++D A+ + L + ++ H+G + + S DG + T S DK+ K+W S
Sbjct: 320 GDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 10/130 (7%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
L+ H G V + ++P+ + S + IVW+ ++ + K + H + A++PN
Sbjct: 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ-KTHAIKLHCPWVMECAFAPN 119
Query: 546 NSMVATGSLDTCVIIYEI--------DKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGE 597
VA G LD+ I+ + + P S +T + + + + SG+
Sbjct: 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGD 179
Query: 598 DACVRVWRLT 607
CV +W +T
Sbjct: 180 QTCV-LWDVT 188
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 63/143 (44%), Gaps = 6/143 (4%)
Query: 141 FDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDG 200
GHS +V S + P + + I + +D + + + + + H +V F+P+G
Sbjct: 62 LQGHSGKVYSLDWTPEKNW-IVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 201 SKFISVSSDKKGIIYD-GKTADKIGELSPE---DGHKGSVYAVSWSPDGK-QVLTASADK 255
D I++ AD+ G + GHKG + + PD + +++T S D+
Sbjct: 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQ 180
Query: 256 SAKVWDISEDNHGKLKKTLTPSG 278
+ +WD++ + + PSG
Sbjct: 181 TCVLWDVTTGQRISIFGSEFPSG 203
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 97/236 (41%), Gaps = 35/236 (14%)
Query: 320 LSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKC------- 372
L GH V +L + I+S+S DG ++ W Q+ ++ C
Sbjct: 62 LQGHSGKVYSLD-WTPEKNWIVSASQDGRLIVW-----NALTSQKTHAIKLHCPWVMECA 115
Query: 373 FAAIEEEIVTSGFDN--KIWRVSLQGDQCGYANSIDIGSQPKDLSVALHY-----PELVL 425
FA + + G D+ I+ +S Q D+ G + + K + + Y L+
Sbjct: 116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLIT 175
Query: 426 VSTDSGVVL--LRGAEVVSTINLRFP-------VTASAIAPDGSEAIIGSQDGKLRVYSI 476
S D VL + + +S FP ++ S + + + I GS D +R++ +
Sbjct: 176 GSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDL 235
Query: 477 RGDTLTEEAV--LEKHRGAVSVIRYSPDVSMFASGDVNREAIVWD-RVSREVKLKN 529
R +T AV H G ++ +++ PD F +G + ++D R ++++ N
Sbjct: 236 R---ITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN 288
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 21/117 (17%)
Query: 505 MFASGDVNREAIVWDRVSREVKLKNMLYHTA----------RINCLAWSPNNSM---VAT 551
+FAS + A +WD +K K + H + +++ + W P NS AT
Sbjct: 180 VFASAGSSNFASIWD-----LKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATAT 234
Query: 552 GS-LDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAF--TDEHSVVSSGEDACVRVWR 605
GS D ++I+++ + T+ H G+ L + DEH ++SSG D V +W
Sbjct: 235 GSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 5/142 (3%)
Query: 215 YDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTL 274
++GK + + S H G V + ++ DG +LT D ++W+ S + +
Sbjct: 229 HNGKKSQAVE--SANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGK 286
Query: 275 TPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLN 334
+ S V C ++F V V G TI++++ E+ + L GH K V V
Sbjct: 287 VCNNSKKGLKFTVSCGCSSEF-VFVPYGSTIAVYTVYSGEQITM-LKGHYKTVDCC-VFQ 343
Query: 335 IDPKVILSSSYDGLIVKWIQGI 356
+ + + S S D I+ W+ +
Sbjct: 344 SNFQELYSGSRDCNILAWVPSL 365
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 231 GHKGSVYAVSWSPDGKQVL-TASADKSAKVWD--------ISEDNHGKLKKTLTPSGSGG 281
GH+ + AVSWSP +L TASAD K+WD I+ D H K S +
Sbjct: 184 GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTA 243
Query: 282 VDDMLVGCLWQNDFLVIVSLG 302
+ + G + +D L ++++G
Sbjct: 244 HNGKVNGLCFTSDGLHLLTVG 264
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 14/92 (15%)
Query: 185 RGHSNFVNCVRFSP-DGSKFISVSSDKKGIIYDGKTADK-----------IGELSPEDGH 232
R H +N + P +G +S SD ++YD + + + IG P D H
Sbjct: 40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHP-DVH 98
Query: 233 KGSVYAVSWSPDGKQVLTASA-DKSAKVWDIS 263
+ SV V W P + T+S+ DK+ KVWD +
Sbjct: 99 RYSVETVQWYPHDTGMFTSSSFDKTLKVWDTN 130
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 74/180 (41%), Gaps = 32/180 (17%)
Query: 450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGD-TLTEEAVLEKHRGAVSVIRYSPDVSMFAS 508
VT AP + + SQD VY R D T + VL + A + +R+SP+ FA
Sbjct: 58 VTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAV 117
Query: 509 GD---------VNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVI 559
G +E W VS+ LK L T I L W PNN ++A G D
Sbjct: 118 GSGARVISVCYFEQENDWW--VSKH--LKRPLRST--ILSLDWHPNNVLLAAGCADRKAY 171
Query: 560 I---YEIDKPASSRMTIKGAHL------------GGVYGLAFTDE-HSVVSSGEDACVRV 603
+ Y D A ++ G+ L G V+ + F+ +++ +G D+ V +
Sbjct: 172 VLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTI 231
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 3/125 (2%)
Query: 152 AFKPSRPFRIATCGEDFLVNFYE--GPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSD 209
AF R + T + V YE G +K + H V CV ++P ++ ++ S D
Sbjct: 18 AFNSQRTEFVTTTATN-QVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD 76
Query: 210 KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGK 269
+ +Y+ + + + V WSP+ + S + V ++N
Sbjct: 77 RNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWW 136
Query: 270 LKKTL 274
+ K L
Sbjct: 137 VSKHL 141
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 186 GHSNFVNCVRFSP-DGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD 244
GH N +N ++F P D + +SVS D +++ +T + +GH+ V + +
Sbjct: 108 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 167
Query: 245 GKQVLTASADKSAKVWDIS 263
G+++++ D S K+W I+
Sbjct: 168 GEKIMSCGMDHSLKLWRIN 186
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 102/262 (38%), Gaps = 42/262 (16%)
Query: 41 ILDLSNPLQVSI---YGEHAYPATVARFSP-NGEWIASADVSGTVRIWGAHNDHVLKKEF 96
I+ + NP+ + Y H +F P + + S +R+W D L F
Sbjct: 91 IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD-TLVAIF 149
Query: 97 RVLSGRIDDL---QWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAF 153
+ G D++ + G +I++CG L R +S+R+++ A
Sbjct: 150 GGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI--------------NSKRMMN-AI 194
Query: 154 KPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGI 213
K S + F+ P F + HR N+V+CVR+ G +S S + +
Sbjct: 195 KESYDYNPNKTNRPFISQKIHFPDFSTRDIHR---NYVDCVRWL--GDLILSKSCENAIV 249
Query: 214 IYD-GKTADKIGELSPE----------DGHKGSVYAVSWSPDGKQVLTASADKSAK--VW 260
+ GK D I ++ P D + ++ + +S D Q + A ++ K VW
Sbjct: 250 CWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVW 309
Query: 261 DIS-EDNHGKLKKTLTPSGSGG 281
D+ ED H TLT G
Sbjct: 310 DLEVEDPHKAKCTTLTHHKCGA 331
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 186 GHSNFVNCVRFSP-DGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD 244
GH N +N ++F P D + +SVS D +++ +T + +GH+ V + +
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 245 GKQVLTASADKSAKVWDIS 263
G+++++ D S K+W I+
Sbjct: 172 GEKIMSCGMDHSLKLWRIN 190
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 102/262 (38%), Gaps = 42/262 (16%)
Query: 41 ILDLSNPLQVSI---YGEHAYPATVARFSP-NGEWIASADVSGTVRIWGAHNDHVLKKEF 96
I+ + NP+ + Y H +F P + + S +R+W D L F
Sbjct: 95 IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD-TLVAIF 153
Query: 97 RVLSGRIDDL---QWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAF 153
+ G D++ + G +I++CG L R +S+R+++ A
Sbjct: 154 GGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI--------------NSKRMMN-AI 198
Query: 154 KPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGI 213
K S + F+ P F + HR N+V+CVR+ G +S S + +
Sbjct: 199 KESYDYNPNKTNRPFISQKIHFPDFSTRDIHR---NYVDCVRWL--GDLILSKSCENAIV 253
Query: 214 IYD-GKTADKIGELSPE----------DGHKGSVYAVSWSPDGKQVLTASADKSAK--VW 260
+ GK D I ++ P D + ++ + +S D Q + A ++ K VW
Sbjct: 254 CWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVW 313
Query: 261 DIS-EDNHGKLKKTLTPSGSGG 281
D+ ED H TLT G
Sbjct: 314 DLEVEDPHKAKCTTLTHHKCGA 335
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 186 GHSNFVNCVRFSP-DGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD 244
GH N +N ++F P D + +SVS D +++ +T + +GH+ V + +
Sbjct: 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 172
Query: 245 GKQVLTASADKSAKVWDIS 263
G+++++ D S K+W I+
Sbjct: 173 GEKIMSCGMDHSLKLWRIN 191
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 102/262 (38%), Gaps = 42/262 (16%)
Query: 41 ILDLSNPLQVSI---YGEHAYPATVARFSP-NGEWIASADVSGTVRIWGAHNDHVLKKEF 96
I+ + NP+ + Y H +F P + + S +R+W D L F
Sbjct: 96 IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD-TLVAIF 154
Query: 97 RVLSGRIDDL---QWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAF 153
+ G D++ + G +I++CG L R +S+R+++ A
Sbjct: 155 GGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI--------------NSKRMMN-AI 199
Query: 154 KPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGI 213
K S + F+ P F + HR N+V+CVR+ G +S S + +
Sbjct: 200 KESYDYNPNKTNRPFISQKIHFPDFSTRDIHR---NYVDCVRWL--GDLILSKSCENAIV 254
Query: 214 IYD-GKTADKIGELSPE----------DGHKGSVYAVSWSPDGKQVLTASADKSAK--VW 260
+ GK D I ++ P D + ++ + +S D Q + A ++ K VW
Sbjct: 255 CWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVW 314
Query: 261 DIS-EDNHGKLKKTLTPSGSGG 281
D+ ED H TLT G
Sbjct: 315 DLEVEDPHKAKCTTLTHHKCGA 336
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 186 GHSNFVNCVRFSP-DGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD 244
GH N +N ++F P D + +SVS D +++ +T + +GH+ V + +
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 245 GKQVLTASADKSAKVWDIS 263
G+++++ D S K+W I+
Sbjct: 172 GEKIMSCGMDHSLKLWRIN 190
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 102/262 (38%), Gaps = 42/262 (16%)
Query: 41 ILDLSNPLQVSI---YGEHAYPATVARFSP-NGEWIASADVSGTVRIWGAHNDHVLKKEF 96
I+ + NP+ + Y H +F P + + S +R+W D L F
Sbjct: 95 IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD-TLVAIF 153
Query: 97 RVLSGRIDDL---QWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAF 153
+ G D++ + G +I++CG L R +S+R+++ A
Sbjct: 154 GGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI--------------NSKRMMN-AI 198
Query: 154 KPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGI 213
K S + F+ P F + HR N+V+CVR+ G +S S + +
Sbjct: 199 KESYDYNPNKTNRPFISQKIHFPDFSTRDIHR---NYVDCVRWL--GDLILSKSCENAIV 253
Query: 214 IYD-GKTADKIGELSPE----------DGHKGSVYAVSWSPDGKQVLTASADKSAK--VW 260
+ GK D I ++ P D + ++ + +S D Q + A ++ K VW
Sbjct: 254 CWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSTDFWQKMLALGNQVGKLYVW 313
Query: 261 DIS-EDNHGKLKKTLTPSGSGG 281
D+ ED H TLT G
Sbjct: 314 DLEVEDPHKAKCTTLTHHKCGA 335
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 186 GHSNFVNCVRFSP-DGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD 244
GH N +N ++F P D + +SVS D +++ +T + +GH+ V + +
Sbjct: 149 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 208
Query: 245 GKQVLTASADKSAKVWDIS 263
G+++++ D S K+W I+
Sbjct: 209 GEKIMSCGMDHSLKLWRIN 227
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 102/262 (38%), Gaps = 42/262 (16%)
Query: 41 ILDLSNPLQVSI---YGEHAYPATVARFSP-NGEWIASADVSGTVRIWGAHNDHVLKKEF 96
I+ + NP+ + Y H +F P + + S +R+W D L F
Sbjct: 132 IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD-TLVAIF 190
Query: 97 RVLSGRIDDL---QWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAF 153
+ G D++ + G +I++CG L R +S+R+++ A
Sbjct: 191 GGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI--------------NSKRMMN-AI 235
Query: 154 KPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGI 213
K S + F+ P F + HR N+V+CVR+ G +S S + +
Sbjct: 236 KESYDYNPNKTNRPFISQKIHFPDFSTRDIHR---NYVDCVRWL--GDLILSKSCENAIV 290
Query: 214 IYD-GKTADKIGELSPE----------DGHKGSVYAVSWSPDGKQVLTASADKSAK--VW 260
+ GK D I ++ P D + ++ + +S D Q + A ++ K VW
Sbjct: 291 CWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVW 350
Query: 261 DIS-EDNHGKLKKTLTPSGSGG 281
D+ ED H TLT G
Sbjct: 351 DLEVEDPHKAKCTTLTHHKCGA 372
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 56 HAYPATVARFSPNGEWIASADVSGT-VRIWGAHNDHVLKKEFRVLSGR--IDDLQWSPDG 112
HA P + R + G+ +A+ GT +R++ N VL +EFR R I D++WSPDG
Sbjct: 178 HANPVKMVRLNRKGDMVATCSQDGTLIRVFQTDNG-VLVREFRRGLDRTSIIDMRWSPDG 236
Query: 113 LRIVACGD 120
++ D
Sbjct: 237 SKLAVVSD 244
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Query: 450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASG 509
+ + + PDG I+G + L ++ + T +A L A + SPD + S
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159
Query: 510 DVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEI 563
+ VWD + + ++ HT +C+ S + + + TG LD V +++
Sbjct: 160 CSDGNIAVWD-LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 13/224 (5%)
Query: 41 ILDLSNPL-QVSIYGEHAYPATVA-RFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRV 98
I DL+ P ++ + PA A SP+ + S G + +W HN L ++F+
Sbjct: 123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-QTLVRQFQG 181
Query: 99 LSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRP 158
+ + S DG ++ G + VR++ G + + D + ++ S + P+
Sbjct: 182 HTDGASCIDISNDGTKLWT---GGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGE 237
Query: 159 FRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGK 218
+ + + P K++L H + V ++F+ G F+S D ++ +
Sbjct: 238 WLAVGMESSNVEVLHVNKPDKYQL--HLHESCVLSLKFAYCGKWFVSTGKDN--LLNAWR 293
Query: 219 TADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDI 262
T G + SV + S D K ++T S DK A V+++
Sbjct: 294 TP--YGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 37/195 (18%), Positives = 73/195 (37%), Gaps = 13/195 (6%)
Query: 194 VRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA 253
+ SPD S SD ++D + + GH + S DG ++ T
Sbjct: 147 LAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ---GHTDGASCIDISNDGTKLWTGGL 203
Query: 254 DKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDL 313
D + + WD+ E + + S +G ++L + + + N
Sbjct: 204 DNTVRSWDLREGRQLQQHDFTSQIFS-------LGYCPTGEWLAVGMESSNVEVLHVNKP 256
Query: 314 EKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCF 373
+K L L H V +L K +S+ D L+ W G ++ +S + C
Sbjct: 257 DKYQLHL--HESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCD 313
Query: 374 AAIEEEIVTSGFDNK 388
+++++ + +G +K
Sbjct: 314 ISVDDKYIVTGSGDK 328
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 17/103 (16%)
Query: 176 PPFKFKLSHR--GHSNFVNCVRFSPDGSKFISVSSDKKGI----IYDGKTADKIGELSP- 228
P + F+ H +SN + V+FSP GS ++++ D +Y+ + ++IG LS
Sbjct: 219 PLYNFESQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFGERIGSLSVP 277
Query: 229 ---------EDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDI 262
E H V ++S++ G+ + +A D + WD+
Sbjct: 278 THSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 17/103 (16%)
Query: 176 PPFKFKLSHR--GHSNFVNCVRFSPDGSKFISVSSDKKGI----IYDGKTADKIGELS-- 227
P + F+ H +SN + V+FSP GS ++++ D +Y+ + ++IG LS
Sbjct: 229 PLYNFESQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFGERIGSLSVP 287
Query: 228 --------PEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDI 262
E H V ++S++ G+ + +A D + WD+
Sbjct: 288 THSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 330
>pdb|1I4U|A Chain A, The C1 Subunit Of Alpha-Crustacyanin
pdb|1I4U|B Chain B, The C1 Subunit Of Alpha-Crustacyanin
pdb|1OBQ|A Chain A, Apocrustacyanin C1 Crystals Grown In Space And Earth Using
Vapour Diffusion Geometry
pdb|1OBQ|B Chain B, Apocrustacyanin C1 Crystals Grown In Space And Earth Using
Vapour Diffusion Geometry
pdb|1OBU|A Chain A, Apocrustacyanin C1 Crystals Grown In Space And Earth Using
Vapour Diffusion Geometry
pdb|1OBU|B Chain B, Apocrustacyanin C1 Crystals Grown In Space And Earth Using
Vapour Diffusion Geometry
Length = 181
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 171 NFYEGPPFKFKLSHRGHSNFVNCVR--FSPDGSKFISVSSDKKGIIYDGKTADKIGELSP 228
N Y G ++F L++ + CVR +S DG +F+ S+ GI YDG + G+L P
Sbjct: 29 NSYAGVWYQFALTNNPYQLIEKCVRNEYSFDGKQFVIEST---GIAYDGNLLKRNGKLYP 85
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 12/114 (10%)
Query: 114 RIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFY 173
R+V GD G ++ G + H ++V A P + +AT D V +
Sbjct: 222 RMVVTGDNVGNVILLNM---DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIW 278
Query: 174 E------GPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTAD 221
+ F + L HR + VN FSPDG++ ++ + +Y D
Sbjct: 279 DLRQVRGKASFLYSLPHR---HPVNAACFSPDGARLLTTDQKSEIRVYSASQWD 329
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 435 LRG-AEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYS 475
+RG A + ++ R PV A+ +PDG+ + Q ++RVYS
Sbjct: 283 VRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYS 324
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 12/114 (10%)
Query: 114 RIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFY 173
R+V GD G ++ G + H ++V A P + +AT D V +
Sbjct: 222 RMVVTGDNVGNVILLNM---DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIW 278
Query: 174 E------GPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTAD 221
+ F + L HR + VN FSPDG++ ++ + +Y D
Sbjct: 279 DLRQVRGKASFLYSLPHR---HPVNAACFSPDGARLLTTDQKSEIRVYSASQWD 329
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 435 LRG-AEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYS 475
+RG A + ++ R PV A+ +PDG+ + Q ++RVYS
Sbjct: 283 VRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYS 324
>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
pdb|3VU4|B Chain B, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
Length = 355
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 56 HAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRID--DLQWSPDGL 113
H P + R + + +A+ GT+ D VL +EFR R D D++WS DG
Sbjct: 194 HTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGS 253
Query: 114 RIVACGD 120
++ D
Sbjct: 254 KLAVVSD 260
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 12/114 (10%)
Query: 114 RIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFY 173
R+V GD G ++ G + H ++V A P + +AT D V +
Sbjct: 223 RMVVTGDNVGNVILLNM---DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIW 279
Query: 174 E------GPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTAD 221
+ F + L HR + VN FSPDG++ ++ + +Y D
Sbjct: 280 DLRQVRGKASFLYSLPHR---HPVNAACFSPDGARLLTTDQKSEIRVYSASQWD 330
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 438 AEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYS 475
A + ++ R PV A+ +PDG+ + Q ++RVYS
Sbjct: 288 ASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYS 325
>pdb|3C73|A Chain A, Structure Of Cehc Variant Resa
pdb|3C73|B Chain B, Structure Of Cehc Variant Resa
Length = 140
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 13/107 (12%)
Query: 68 NGEWIASADVSGT---VRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGK 124
NG+ I +D+ G + WG +H KKEF ++ + + G+ IVA G+ K
Sbjct: 12 NGKRIELSDLKGKGVFLNFWGTWCEHC-KKEFPYMANQYK--HFKSQGVEIVAVNVGESK 68
Query: 125 SLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVN 171
V FM G N R+VL + ++ FL+N
Sbjct: 69 IAVHNFMKSYGVNFPVVLDTDRQVLDA-------YDVSPLPTTFLIN 108
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 185 RGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD 244
+ H + + ++F P G IS S D + I+ K L GH+ +V ++
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI---GHRATVTDIAIIDR 189
Query: 245 GKQVLTASADKSAKVWD 261
G+ VL+AS D + ++W+
Sbjct: 190 GRNVLSASLDGTIRLWE 206
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 27/169 (15%)
Query: 316 SPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYG-GKLQRKENSQIKCFA 374
+P L GH VT + +++ + +LS+S DG I W G G RKEN
Sbjct: 170 NPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPH----D 224
Query: 375 AIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVL 434
+ + G D ++ +S N+++ G+ Y + V+ SGV+
Sbjct: 225 GVNSIALFVGTDRQLHEIS-----TSKKNNLEFGT----------YGKYVIAGHVSGVIT 269
Query: 435 LRGA-EVVSTINL--RFPVTASAIAPDGSEA---IIGSQDGKLRVYSIR 477
+ TI L +F + +++ DG+ A G ++G L + +R
Sbjct: 270 VHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLR 318
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 31 ILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIW 84
IL T + +LD + LQ I H T +F P+GE + S+ ++IW
Sbjct: 110 ILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIW 163
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 185 RGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD 244
+ H + + ++F P G IS S D + I+ K L GH+ +V ++
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI---GHRATVTDIAIIDR 192
Query: 245 GKQVLTASADKSAKVWD 261
G+ VL+AS D + ++W+
Sbjct: 193 GRNVLSASLDGTIRLWE 209
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 27/169 (15%)
Query: 316 SPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYG-GKLQRKENSQIKCFA 374
+P L GH VT + +++ + +LS+S DG I W G G RKEN
Sbjct: 173 NPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPH----D 227
Query: 375 AIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVL 434
+ + G D ++ +S N+++ G+ Y + V+ SGV+
Sbjct: 228 GVNSIALFVGTDRQLHEIS-----TSKKNNLEFGT----------YGKYVIAGHVSGVIT 272
Query: 435 LRGA-EVVSTINL--RFPVTASAIAPDGSEA---IIGSQDGKLRVYSIR 477
+ TI L +F + +++ DG+ A G ++G L + +R
Sbjct: 273 VHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLR 321
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 31 ILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIW 84
IL T + +LD + LQ I H T +F P+GE + S+ ++IW
Sbjct: 113 ILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIW 166
>pdb|2XGN|A Chain A, Structural And Mechanistic Studies On A Cephalosporin
Esterase From The Clavulanic Acid Biosynthesis Pathway
pdb|2XGN|B Chain B, Structural And Mechanistic Studies On A Cephalosporin
Esterase From The Clavulanic Acid Biosynthesis Pathway
pdb|2XH9|A Chain A, Structural And Mechanistic Studies On A Cephalosporin
Esterase From The Clavulanic Acid Biosynthesis Pathway
pdb|2XH9|B Chain B, Structural And Mechanistic Studies On A Cephalosporin
Esterase From The Clavulanic Acid Biosynthesis Pathway
Length = 458
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 15/90 (16%)
Query: 177 PFKFKLSHR-GHSNFVNCVRFSPDGSKFI-SVSSDKKGIIY-----------DGKTADKI 223
PF + H H +V V +P G ++I S++ D G+I D T + +
Sbjct: 77 PFTVRAYHPVAHKGWV--VLSAPAGVRYILSLTLDSSGLIRILTLKPETVIPDMVTWNDV 134
Query: 224 GELSPEDGHKGSVYAVSWSPDGKQVLTASA 253
E G + SVYAV +PDG +VL ASA
Sbjct: 135 EETLHTPGVQHSVYAVRLTPDGHEVLHASA 164
>pdb|2XFS|A Chain A, Structural And Mechanistic Studies On A Cephalosporin
Esterase From The Clavulanic Acid Biosynthesis Pathway
pdb|2XFS|B Chain B, Structural And Mechanistic Studies On A Cephalosporin
Esterase From The Clavulanic Acid Biosynthesis Pathway
pdb|2XFT|A Chain A, Structural And Mechanistic Studies On A Cephalosporin
Esterase From The Clavulanic Acid Biosynthesis Pathway
pdb|2XFT|B Chain B, Structural And Mechanistic Studies On A Cephalosporin
Esterase From The Clavulanic Acid Biosynthesis Pathway
Length = 458
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 15/90 (16%)
Query: 177 PFKFKLSHR-GHSNFVNCVRFSPDGSKFI-SVSSDKKGIIY-----------DGKTADKI 223
PF + H H +V V +P G ++I S++ D G+I D T + +
Sbjct: 77 PFTVRAYHPVAHKGWV--VLSAPAGVRYILSLTLDSSGLIRILTLKPETVIPDMVTWNDV 134
Query: 224 GELSPEDGHKGSVYAVSWSPDGKQVLTASA 253
E G + SVYAV +PDG +VL ASA
Sbjct: 135 EETLHTPGVQHSVYAVRLTPDGHEVLHASA 164
>pdb|2XEP|A Chain A, Structural And Mechanistic Studies On A Cephalosporin
Esterase From The Clavulanic Acid Biosynthesis Pathway
pdb|2XEP|B Chain B, Structural And Mechanistic Studies On A Cephalosporin
Esterase From The Clavulanic Acid Biosynthesis Pathway
pdb|2XF3|A Chain A, Structural And Mechanistic Studies On A Cephalosporin
Esterase From The Clavulanic Acid Biosynthesis Pathway
pdb|2XF3|B Chain B, Structural And Mechanistic Studies On A Cephalosporin
Esterase From The Clavulanic Acid Biosynthesis Pathway
Length = 458
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 15/90 (16%)
Query: 177 PFKFKLSHR-GHSNFVNCVRFSPDGSKFI-SVSSDKKGIIY-----------DGKTADKI 223
PF + H H +V V +P G ++I S++ D G+I D T + +
Sbjct: 77 PFTVRAYHPVAHKGWV--VLSAPAGVRYILSLTLDSSGLIRILTLKPETVIPDMVTWNDV 134
Query: 224 GELSPEDGHKGSVYAVSWSPDGKQVLTASA 253
E G + SVYAV +PDG +VL ASA
Sbjct: 135 EETLHTPGVQHSVYAVRLTPDGHEVLHASA 164
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 97/266 (36%), Gaps = 43/266 (16%)
Query: 37 RSVIILDLSNPLQVSI---YGEHAYPATVARFSP-NGEWIASADVSGTVRIWGAHNDHVL 92
RSV I D+ N Q+ I G VA P G +AS V IW N
Sbjct: 35 RSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWE 94
Query: 93 K-KEFRVLSGRIDDLQWSP-DGLRIVACGD-----------GKGKSLVR----------- 128
K E ++ + W+P D I+ACG G+G+ V+
Sbjct: 95 KSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCN 154
Query: 129 AFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFY---EGPPFKFKLSHR 185
A W G H KP+ R A+ G D L+ + E +K +
Sbjct: 155 AVSWAPAVVPGSLIDHPS-----GQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE 209
Query: 186 GHSNFVNCVRFSPD----GSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGS--VYAV 239
HS++V V ++P S S S D + I+ A SP+ HK + V+ V
Sbjct: 210 AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASS-NTWSPKLLHKFNDVVWHV 268
Query: 240 SWSPDGKQVLTASADKSAKVWDISED 265
SWS + + D +W S D
Sbjct: 269 SWSITANILAVSGGDNKVTLWKESVD 294
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 63/128 (49%), Gaps = 11/128 (8%)
Query: 187 HSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD-- 244
H + ++ + G++ + SSD+ I+D + +I ++ GH+G V+ V+W+
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMY 70
Query: 245 GKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLG-- 302
G + + S D+ +W + +G +K+ +G + + C +D+ +I++ G
Sbjct: 71 GNILASCSYDRKVIIW---REENGTWEKSHEHAGHDSSVNSV--CWAPHDYGLILACGSS 125
Query: 303 -GTISIFS 309
G IS+ +
Sbjct: 126 DGAISLLT 133
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 186 GHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPE-DGHKGSVYAVSW-SP 243
GH + V+ V + G + SSD+ ++ ELS H S+ A+ W SP
Sbjct: 7 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 66
Query: 244 D-GKQVLTASADKSAKVWDISEDN 266
+ G+ + +AS DK+ K+W+ D
Sbjct: 67 EYGRIIASASYDKTVKLWEEDPDQ 90
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 226 LSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT 275
LS D H G V++VSW+ G + +A D ++W + N K +T
Sbjct: 297 LSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVIT 346
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 195 RFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSP 243
RFSP+ ++VS+ ++ IIY K+ + GHK + ++SW+P
Sbjct: 177 RFSPEK---LAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAP 222
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 186 GHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPE-DGHKGSVYAVSW-SP 243
GH + V+ V + G + SSD+ ++ ELS H S+ A+ W SP
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 244 D-GKQVLTASADKSAKVWDISEDN 266
+ G+ + +AS DK+ K+W+ D
Sbjct: 69 EYGRIIASASYDKTVKLWEEDPDQ 92
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 226 LSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT 275
LS D H G V++VSW+ G + +A D ++W + N K +T
Sbjct: 299 LSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVIT 348
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 195 RFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSP 243
RFSP+ ++VS+ ++ IIY K+ + GHK + ++SW+P
Sbjct: 179 RFSPEK---LAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAP 224
>pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site
Motif (Cphc)
Length = 143
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 13/107 (12%)
Query: 68 NGEWIASADVSGT---VRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGK 124
NG+ I +D+ G + WG H KKEF ++ + + G+ IVA G+ K
Sbjct: 15 NGKRIELSDLKGKGVFLNFWGTWCPHC-KKEFPYMANQYK--HFKSQGVEIVAVNVGESK 71
Query: 125 SLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVN 171
V FM G N R+VL + ++ FL+N
Sbjct: 72 IAVHNFMKSYGVNFPVVLDTDRQVLDA-------YDVSPLPTTFLIN 111
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 186 GHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPE-DGHKGSVYAVSW-SP 243
GH + V+ V + G + SSD+ ++ ELS H S+ A+ W SP
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 244 D-GKQVLTASADKSAKVWDISEDN 266
+ G+ + +AS DK+ K+W+ D
Sbjct: 69 EYGRIIASASYDKTVKLWEEDPDQ 92
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 77/181 (42%), Gaps = 23/181 (12%)
Query: 107 QWSPDGLRIVACGDGKGKSLVRAFMWDSGTN-----VGEFDGHSRRVLSCAFKPS--RPF 159
++SP+ L + A L +A ++ G + + GH + S ++ PS R +
Sbjct: 179 RFSPEKLAVSA--------LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWY 230
Query: 160 R-IATCGEDFLVNFYE----GPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII 214
+ IAT +D + ++ P + S + F N D ++++K +
Sbjct: 231 QLIATGCKDGRIRIFKITEKLSPLASEESLTNSNXFDNSADVDXDAQGRSDSNTEEKAEL 290
Query: 215 YDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTL 274
++ ++ LS D H G V++VSW+ G + +A D ++W + N K +
Sbjct: 291 ---QSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCXSVI 347
Query: 275 T 275
T
Sbjct: 348 T 348
>pdb|2QC5|A Chain A, Streptogramin B Lyase Structure
Length = 300
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 10/107 (9%)
Query: 381 VTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRG--- 437
+T G + IW L GD+ G + D DL YP + + +D+ +
Sbjct: 109 ITEGLNGDIWFTQLNGDRIGKLTA-DGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNN 167
Query: 438 --AEVVSTINL-RFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTL 481
+ +T L +P+ +A AP G I DG L I G+ +
Sbjct: 168 SIGRITNTGKLEEYPLPTNAAAPVG---ITSGNDGALWFVEIMGNKI 211
>pdb|2X7X|A Chain A, Fructose Binding Periplasmic Domain Of Hybrid Two
Component System Bt1754
pdb|2X7X|B Chain B, Fructose Binding Periplasmic Domain Of Hybrid Two
Component System Bt1754
Length = 325
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 487 LEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNN 546
+E+H+G ++ I PD+ + D W+R E+++ +ML +I+ A +N
Sbjct: 144 MERHQGFMAAISKFPDIKLIDKADA-----AWERGPAEIEMDSMLRRHPKID--AVYAHN 196
Query: 547 SMVATGS 553
+A G+
Sbjct: 197 DRIAPGA 203
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 65/182 (35%), Gaps = 59/182 (32%)
Query: 19 GILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVS 78
G++ISG + ++ G V L N + A V FS N ASAD
Sbjct: 115 GVVISGSWDKTAKVWKEGSLVYNLQAHNA--------SVWDAKVVSFSENKFLTASAD-- 164
Query: 79 GTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNV 138
T+++W ND V+K SG +D+ +R +A D
Sbjct: 165 KTIKLW--QNDKVIK----TFSGIHNDV------VRHLAVVD------------------ 194
Query: 139 GEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSP 198
DGH +C D L+ + ++ GH +FV C++ P
Sbjct: 195 ---DGH----------------FISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLP 235
Query: 199 DG 200
+G
Sbjct: 236 NG 237
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 59/120 (49%), Gaps = 15/120 (12%)
Query: 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL 290
GH+G+V ++S+ DG V++ S DK+AKVW G L L + + V D V
Sbjct: 102 GHQGNVCSLSF-QDG-VVISGSWDKTAKVW-----KEGSLVYNL-QAHNASVWDAKVVSF 153
Query: 291 WQNDFLVIVSLGGTISIFSANDLEKSPLQLSG-HMKNVTALTVLNIDPKVILSSSYDGLI 349
+N FL S TI ++ + + K+ SG H V L V +D +S S DGLI
Sbjct: 154 SENKFLT-ASADKTIKLWQNDKVIKT---FSGIHNDVVRHLAV--VDDGHFISCSNDGLI 207
>pdb|2H1A|A Chain A, Resa C74a Variant
pdb|2H1A|B Chain B, Resa C74a Variant
Length = 143
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 13/107 (12%)
Query: 68 NGEWIASADVSGT---VRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGK 124
NG+ I +D+ G + WG + KKEF ++ + + G+ IVA G+ K
Sbjct: 15 NGKRIELSDLKGKGVFLNFWGTWAEPC-KKEFPYMANQYK--HFKSQGVEIVAVNVGESK 71
Query: 125 SLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVN 171
V FM G N R+VL + ++ FL+N
Sbjct: 72 IAVHNFMKSYGVNFPVVLDTDRQVLDA-------YDVSPLPTTFLIN 111
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 463 IIGSQDGKLRVYSIRGD--TLTEEAVLEKHRGAVSVIRYSPDV---SMFASGDVNREAIV 517
+ G D ++++ D T E+ LE H V + +SP V S AS +R I+
Sbjct: 176 VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCII 235
Query: 518 WDRVSREVKLKNMLYHTARINCLAWSPNNSM 548
W + + + K L + + W + S+
Sbjct: 236 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSL 266
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 463 IIGSQDGKLRVYSIRGD--TLTEEAVLEKHRGAVSVIRYSPDV---SMFASGDVNREAIV 517
+ G D ++++ D T E+ LE H V + +SP V S AS +R I+
Sbjct: 174 VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCII 233
Query: 518 WDRVSREVKLKNMLYHTARINCLAWSPNNSM 548
W + + + K L + + W + S+
Sbjct: 234 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSL 264
>pdb|2H19|A Chain A, Crystal Structure Of Resa Cys77ala Variant
pdb|2H19|B Chain B, Crystal Structure Of Resa Cys77ala Variant
Length = 143
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 13/107 (12%)
Query: 68 NGEWIASADVSGT---VRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGK 124
NG+ I +D+ G + WG + KKEF ++ + + G+ IVA G+ K
Sbjct: 15 NGKRIELSDLKGKGVFLNFWGTWCEPA-KKEFPYMANQYK--HFKSQGVEIVAVNVGESK 71
Query: 125 SLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVN 171
V FM G N R+VL + ++ FL+N
Sbjct: 72 IAVHNFMKSYGVNFPVVLDTDRQVLDA-------YDVSPLPTTFLIN 111
>pdb|2OIT|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Proto-Oncogene Nup214CAN
Length = 434
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 60/133 (45%), Gaps = 17/133 (12%)
Query: 444 INLRFPVTASAIAPDG---SEAIIGSQDGKL-RVYSIRGDTLTEEAVLEK-----HR--- 491
+ ++FP+ A++ D S ++ S+ G + + +R T + EA +K H+
Sbjct: 89 VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVR--TFSNEAKQQKRPFAYHKLLK 146
Query: 492 ---GAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSM 548
G V ++++P V + + +I +V+ VK+ L T + + WSP
Sbjct: 147 DAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQ 206
Query: 549 VATGSLDTCVIIY 561
+A G + V+ Y
Sbjct: 207 LAVGKQNGTVVQY 219
>pdb|3FMO|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|C Chain C, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 450
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 60/133 (45%), Gaps = 17/133 (12%)
Query: 444 INLRFPVTASAIAPDG---SEAIIGSQDGKL-RVYSIRGDTLTEEAVLEK-----HR--- 491
+ ++FP+ A++ D S ++ S+ G + + +R T + EA +K H+
Sbjct: 89 VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVR--TFSNEAKQQKRPFAYHKLLK 146
Query: 492 ---GAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSM 548
G V ++++P V + + +I +V+ VK+ L T + + WSP
Sbjct: 147 DAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQ 206
Query: 549 VATGSLDTCVIIY 561
+A G + V+ Y
Sbjct: 207 LAVGKQNGTVVQY 219
>pdb|2JFR|A Chain A, Crystal Structure Of The Ppm Ser-Thr Phosphatase Mspp From
Mycobacterium Smegmatis In Complex With Phosphate At
0.83 A Resolution
pdb|2JFS|A Chain A, Crystal Structure Of The Ppm Ser-Thr Phosphatase Mspp From
Mycobacterium Smegmatis In Complex With Cacodylate
pdb|2JFT|A Chain A, Crystal Structure Of The Ppm Ser-Thr Phosphatase Mspp From
Mycobacterium Smegmatis In Complex With Sulfate
pdb|2V06|A Chain A, Crystal Structure Of The Ppm Ser-Thr Phosphatase Mspp From
Mycobacterium Smegmatis At Ph 5.5
Length = 234
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 15/105 (14%)
Query: 454 AIAPDGSEAIIGSQDGKLRVYSIRGD-------TLTEEAVLEKHRGAVSVIRYSPDVSMF 506
A APD + Q LRV+ + GD TLT AV E +G V+ D ++
Sbjct: 58 AAAPDRDGLLEAVQQANLRVFELLGDEPTVSGTTLTAVAVFEPGQGGPLVVNIG-DSPLY 116
Query: 507 ASGDVNREAIVWDR-VSRE-VKLKNMLYHTARINCLAWSPNNSMV 549
D + E + D V+ E V++ + H AR W P ++
Sbjct: 117 RIRDGHMEQLTDDHSVAGELVRMGEITRHEAR-----WHPQRHLL 156
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 463 IIGSQDGKLRVYSI-RGDTLTEEAVLE-KHRGAVSVIRYSPDVSMFASGDVNREAIVWDR 520
++ S G + ++ + +TL + +H VS + + SG + VWD
Sbjct: 97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD- 155
Query: 521 VSREVKLKNMLYHTARINCLAWSPN-NSMVATGSLDTCVIIYE--IDKPAS 568
++++V L + H A++ C+A SP+ +S+ + S D +++++ KPAS
Sbjct: 156 LAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPAS 206
>pdb|3FHC|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 405
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 60/133 (45%), Gaps = 17/133 (12%)
Query: 444 INLRFPVTASAIAPDG---SEAIIGSQDGKL-RVYSIRGDTLTEEAVLEK-----HR--- 491
+ ++FP+ A++ D S ++ S+ G + + +R T + EA +K H+
Sbjct: 89 VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVR--TFSNEAKQQKRPFAYHKLLK 146
Query: 492 ---GAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSM 548
G V ++++P V + + +I +V+ VK+ L T + + WSP
Sbjct: 147 DAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQ 206
Query: 549 VATGSLDTCVIIY 561
+A G + V+ Y
Sbjct: 207 LAVGKQNGTVVQY 219
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 463 IIGSQDGKLRVYSIRGDTLTE--EAVLEKHRGAVSVIRYSPDV---SMFASGDVNREAIV 517
+ G D ++++ D T E+ LE H V + +SP V S AS +R I+
Sbjct: 174 VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCII 233
Query: 518 WDRVSREVKLKNMLYHTARINCLAWSPNNSM 548
W + + + K L + + W + S+
Sbjct: 234 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSL 264
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 463 IIGSQDGKLRVYSIRGDTLTE--EAVLEKHRGAVSVIRYSPDV---SMFASGDVNREAIV 517
+ G D ++++ D T E+ LE H V + +SP V S AS +R I+
Sbjct: 174 VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCII 233
Query: 518 WDRVSREVKLKNMLYHTARINCLAWSPNNSM 548
W + + + K L + + W + S+
Sbjct: 234 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSL 264
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 463 IIGSQDGKLRVYSIRGD--TLTEEAVLEKHRGAVSVIRYSPDV---SMFASGDVNREAIV 517
+ G D ++++ D T E+ LE H V + +SP V S AS +R I+
Sbjct: 174 VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCII 233
Query: 518 WDRVSREVKLKNMLYHTARINCLAWSPNNSM 548
W + + + K L + + W + S+
Sbjct: 234 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSL 264
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 186 GHSNFVNCVRFSPDGSKFISVSSDKKGIIYD--GKTADKIGELSPEDGHKGSVYAVSWSP 243
H+ ++ G + + SSDK I++ G+T I L+ GH+G V+ V W+
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT---GHEGPVWRVDWAH 63
Query: 244 DGKQVLTASADKSAKVWDISEDN 266
+ AS KV E+N
Sbjct: 64 PKFGTILASCSYDGKVLIWKEEN 86
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 515 AIVWDRVSREVK-LKNMLYHTARINCLAWSPNNSMVATGS---LDTCVIIYEIDKPASSR 570
A W SR + L Y ++C W ++S+V +GS L+ ++ +D+ ++
Sbjct: 49 ATGWANFSRNIDPLVEAGYRVILLDCPGWGKSDSVVNSGSRSDLNARILKSVVDQLDIAK 108
Query: 571 MTIKGAHLGGVYGLAFT 587
+ + G +GG +AFT
Sbjct: 109 IHLLGNSMGGHSSVAFT 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,560,497
Number of Sequences: 62578
Number of extensions: 850260
Number of successful extensions: 3345
Number of sequences better than 100.0: 120
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 2084
Number of HSP's gapped (non-prelim): 610
length of query: 609
length of database: 14,973,337
effective HSP length: 105
effective length of query: 504
effective length of database: 8,402,647
effective search space: 4234934088
effective search space used: 4234934088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)