Query 007283
Match_columns 609
No_of_seqs 255 out of 2822
Neff 10.8
Searched_HMMs 46136
Date Thu Mar 28 21:28:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007283.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007283hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0318 WD40 repeat stress pro 100.0 4E-96 9E-101 682.8 68.2 597 2-608 4-603 (603)
2 KOG0319 WD40-repeat-containing 100.0 2.6E-53 5.7E-58 412.0 51.4 566 22-606 25-618 (775)
3 KOG0291 WD40-repeat-containing 100.0 2.8E-50 6.1E-55 391.3 59.5 533 10-607 10-612 (893)
4 KOG0271 Notchless-like WD40 re 100.0 1.1E-51 2.4E-56 371.0 29.1 367 136-605 106-479 (480)
5 KOG0319 WD40-repeat-containing 100.0 2.3E-47 5E-52 370.8 48.2 524 20-564 66-619 (775)
6 KOG0271 Notchless-like WD40 re 100.0 9.5E-50 2.1E-54 358.5 27.1 367 13-562 112-479 (480)
7 KOG0318 WD40 repeat stress pro 100.0 7.5E-45 1.6E-49 340.0 56.8 523 19-564 62-602 (603)
8 KOG2106 Uncharacterized conser 100.0 1.8E-45 4E-50 342.1 50.5 529 15-606 62-625 (626)
9 KOG0306 WD40-repeat-containing 100.0 1.6E-44 3.4E-49 351.2 53.4 566 25-607 31-664 (888)
10 KOG0291 WD40-repeat-containing 100.0 1.3E-40 2.9E-45 324.1 51.2 445 21-565 101-613 (893)
11 KOG0272 U4/U6 small nuclear ri 100.0 3.7E-43 8E-48 320.4 23.5 201 55-263 173-375 (459)
12 KOG0272 U4/U6 small nuclear ri 100.0 1.3E-42 2.7E-47 316.9 25.0 283 142-605 172-458 (459)
13 KOG1063 RNA polymerase II elon 100.0 5.5E-40 1.2E-44 317.1 43.3 574 20-607 18-699 (764)
14 KOG0306 WD40-repeat-containing 100.0 1.7E-39 3.7E-44 316.2 45.7 493 21-565 70-665 (888)
15 KOG1408 WD40 repeat protein [F 100.0 6.6E-38 1.4E-42 303.0 46.0 535 21-565 42-714 (1080)
16 KOG0286 G-protein beta subunit 100.0 1.1E-38 2.4E-43 277.7 33.1 288 51-519 49-343 (343)
17 KOG0286 G-protein beta subunit 100.0 3.5E-38 7.6E-43 274.7 32.0 293 181-605 48-343 (343)
18 KOG0315 G-protein beta subunit 100.0 9.4E-38 2E-42 265.8 27.8 271 202-607 12-288 (311)
19 KOG0315 G-protein beta subunit 100.0 5E-37 1.1E-41 261.4 31.5 298 156-587 8-309 (311)
20 KOG0279 G protein beta subunit 100.0 3.5E-36 7.6E-41 260.7 31.8 291 138-607 8-313 (315)
21 KOG0296 Angio-associated migra 100.0 2.7E-35 5.8E-40 264.4 33.4 336 14-564 62-398 (399)
22 KOG1539 WD repeat protein [Gen 100.0 9.7E-33 2.1E-37 272.5 50.9 549 30-605 49-646 (910)
23 KOG0295 WD40 repeat-containing 100.0 1.2E-35 2.5E-40 266.5 26.2 308 46-563 97-405 (406)
24 KOG0279 G protein beta subunit 100.0 1.6E-34 3.5E-39 250.4 30.8 283 14-310 13-312 (315)
25 KOG0645 WD40 repeat protein [G 100.0 6.3E-34 1.4E-38 245.6 33.3 291 138-607 7-311 (312)
26 KOG0276 Vesicle coat complex C 100.0 1.1E-32 2.3E-37 263.6 43.7 467 51-603 7-486 (794)
27 KOG0273 Beta-transducin family 100.0 1.6E-33 3.5E-38 260.8 35.3 326 141-607 174-523 (524)
28 KOG0645 WD40 repeat protein [G 100.0 9.1E-34 2E-38 244.7 31.3 286 51-354 8-310 (312)
29 KOG0296 Angio-associated migra 100.0 1.7E-33 3.7E-38 252.8 31.9 333 137-607 56-398 (399)
30 KOG0295 WD40 repeat-containing 100.0 2.6E-34 5.7E-39 257.8 25.4 290 179-605 99-404 (406)
31 KOG0292 Vesicle coat complex C 100.0 8.3E-31 1.8E-35 259.9 50.9 494 18-552 11-546 (1202)
32 KOG0263 Transcription initiati 100.0 1.5E-34 3.2E-39 284.9 23.4 236 20-263 382-649 (707)
33 KOG0263 Transcription initiati 100.0 5.4E-34 1.2E-38 281.0 26.1 272 58-522 379-650 (707)
34 KOG1408 WD40 repeat protein [F 100.0 1.3E-31 2.8E-36 259.7 40.2 524 60-608 40-714 (1080)
35 KOG0265 U5 snRNP-specific prot 100.0 6.6E-33 1.4E-37 242.8 27.9 286 183-605 42-336 (338)
36 KOG0293 WD40 repeat-containing 100.0 6.4E-34 1.4E-38 259.0 22.3 289 50-354 217-512 (519)
37 KOG0273 Beta-transducin family 100.0 1.7E-32 3.8E-37 254.1 31.7 334 55-564 176-523 (524)
38 KOG0265 U5 snRNP-specific prot 100.0 1.3E-32 2.8E-37 240.9 27.6 289 53-351 43-334 (338)
39 KOG0281 Beta-TrCP (transducin 100.0 2.4E-34 5.3E-39 256.1 17.0 275 144-607 196-477 (499)
40 KOG0292 Vesicle coat complex C 100.0 5.7E-32 1.2E-36 268.2 34.6 379 96-599 5-388 (1202)
41 KOG1063 RNA polymerase II elon 100.0 1.4E-30 3E-35 252.3 42.8 580 16-607 54-763 (764)
42 KOG0284 Polyadenylation factor 100.0 7.1E-34 1.5E-38 258.6 18.8 240 57-355 96-337 (464)
43 KOG2106 Uncharacterized conser 100.0 4.2E-29 9.1E-34 233.4 49.8 477 106-606 71-580 (626)
44 KOG0284 Polyadenylation factor 100.0 2.8E-33 6E-38 254.8 20.4 287 145-567 96-383 (464)
45 KOG0285 Pleiotropic regulator 100.0 5E-32 1.1E-36 242.4 25.6 287 51-355 145-439 (460)
46 KOG0285 Pleiotropic regulator 100.0 1.1E-31 2.3E-36 240.3 26.9 290 138-565 144-440 (460)
47 KOG0266 WD40 repeat-containing 100.0 2E-31 4.3E-36 271.3 32.0 287 56-354 158-453 (456)
48 KOG1539 WD repeat protein [Gen 100.0 1.3E-29 2.9E-34 250.5 43.1 457 16-562 158-646 (910)
49 KOG0282 mRNA splicing factor [ 100.0 8.5E-33 1.8E-37 257.2 18.9 295 49-353 206-503 (503)
50 KOG0276 Vesicle coat complex C 100.0 3.5E-29 7.6E-34 239.7 43.1 241 16-263 13-257 (794)
51 KOG0278 Serine/threonine kinas 100.0 6.8E-32 1.5E-36 230.2 20.8 289 139-565 8-298 (334)
52 PLN00181 protein SPA1-RELATED; 100.0 4.6E-30 9.9E-35 281.4 40.0 300 53-563 479-792 (793)
53 KOG0293 WD40 repeat-containing 100.0 2.5E-31 5.3E-36 242.3 24.2 289 139-608 218-514 (519)
54 KOG0282 mRNA splicing factor [ 100.0 3.2E-32 6.9E-37 253.4 18.2 292 137-562 206-503 (503)
55 PLN00181 protein SPA1-RELATED; 100.0 6.2E-30 1.3E-34 280.4 39.1 307 167-606 457-792 (793)
56 KOG0266 WD40 repeat-containing 100.0 4.4E-30 9.5E-35 261.4 34.7 290 182-607 152-454 (456)
57 KOG0313 Microtubule binding pr 100.0 1.9E-30 4.2E-35 234.3 26.3 309 143-563 103-417 (423)
58 cd00200 WD40 WD40 domain, foun 100.0 6.2E-29 1.4E-33 240.9 37.8 205 51-263 3-207 (289)
59 cd00200 WD40 WD40 domain, foun 100.0 8.9E-29 1.9E-33 239.8 34.9 287 139-562 3-289 (289)
60 KOG2048 WD40 repeat protein [G 100.0 2.4E-26 5.2E-31 222.9 50.0 489 58-564 26-548 (691)
61 KOG0281 Beta-TrCP (transducin 100.0 1.1E-30 2.4E-35 232.8 18.2 282 4-357 186-479 (499)
62 KOG0313 Microtubule binding pr 100.0 1.5E-29 3.3E-34 228.6 25.7 309 186-607 103-418 (423)
63 KOG0275 Conserved WD40 repeat- 100.0 4.3E-30 9.4E-35 227.1 19.0 288 55-353 211-507 (508)
64 KOG0640 mRNA cleavage stimulat 100.0 5.9E-29 1.3E-33 218.7 22.7 293 52-354 107-425 (430)
65 KOG0300 WD40 repeat-containing 100.0 5.2E-29 1.1E-33 219.7 22.2 343 161-608 127-477 (481)
66 KOG0316 Conserved WD40 repeat- 100.0 8.8E-28 1.9E-32 203.4 27.1 282 182-604 11-296 (307)
67 KOG0316 Conserved WD40 repeat- 100.0 1.1E-27 2.5E-32 202.7 26.8 285 138-562 10-297 (307)
68 KOG2048 WD40 repeat protein [G 100.0 2.1E-24 4.5E-29 209.5 52.0 493 100-606 25-547 (691)
69 KOG0278 Serine/threonine kinas 100.0 7.4E-29 1.6E-33 211.7 18.7 284 96-521 10-297 (334)
70 KOG0277 Peroxisomal targeting 100.0 3.8E-28 8.3E-33 208.0 22.5 280 237-605 12-307 (311)
71 KOG0772 Uncharacterized conser 100.0 1.2E-27 2.6E-32 224.3 25.8 313 177-604 156-484 (641)
72 KOG0277 Peroxisomal targeting 100.0 1E-27 2.2E-32 205.4 22.8 286 103-563 11-308 (311)
73 KOG0283 WD40 repeat-containing 100.0 6.4E-28 1.4E-32 240.4 23.9 302 55-564 265-576 (712)
74 KOG0641 WD40 repeat protein [G 100.0 8.5E-26 1.8E-30 190.1 32.6 296 187-608 31-350 (350)
75 KOG0283 WD40 repeat-containing 100.0 2.1E-27 4.6E-32 236.7 25.3 289 231-607 265-576 (712)
76 KOG0310 Conserved WD40 repeat- 100.0 6.6E-27 1.4E-31 218.5 26.9 289 6-308 17-306 (487)
77 KOG0300 WD40 repeat-containing 100.0 2.6E-27 5.7E-32 209.0 22.3 325 49-522 140-477 (481)
78 KOG0973 Histone transcription 100.0 5.7E-27 1.2E-31 239.6 26.6 311 55-564 10-355 (942)
79 KOG0299 U3 snoRNP-associated p 100.0 2E-26 4.4E-31 213.6 26.8 306 50-509 135-443 (479)
80 KOG0288 WD40 repeat protein Ti 100.0 1.2E-27 2.5E-32 218.7 18.3 290 177-561 164-458 (459)
81 KOG0289 mRNA splicing factor [ 100.0 3.5E-26 7.5E-31 210.3 27.8 285 146-606 220-505 (506)
82 KOG0275 Conserved WD40 repeat- 100.0 1.7E-27 3.7E-32 210.7 18.3 288 143-562 211-507 (508)
83 KOG1407 WD40 repeat protein [F 100.0 7.2E-26 1.6E-30 194.9 26.6 281 51-556 14-294 (313)
84 KOG0310 Conserved WD40 repeat- 100.0 2.8E-26 6E-31 214.4 26.1 282 145-563 26-308 (487)
85 KOG0268 Sof1-like rRNA process 100.0 1.3E-27 2.9E-32 214.6 15.6 284 138-564 59-345 (433)
86 KOG0643 Translation initiation 100.0 1.3E-25 2.8E-30 193.9 26.3 290 141-523 6-319 (327)
87 KOG2096 WD40 repeat protein [G 99.9 1.1E-25 2.4E-30 199.0 24.3 293 50-352 79-399 (420)
88 KOG0643 Translation initiation 99.9 1.3E-25 2.7E-30 194.0 23.9 239 21-262 15-316 (327)
89 KOG0274 Cdc4 and related F-box 99.9 2.4E-25 5.2E-30 225.4 29.8 274 187-608 207-483 (537)
90 KOG0641 WD40 repeat protein [G 99.9 1.3E-24 2.8E-29 183.0 28.4 280 21-311 37-349 (350)
91 KOG0301 Phospholipase A2-activ 99.9 5.8E-25 1.2E-29 213.7 28.3 281 50-564 7-288 (745)
92 KOG0268 Sof1-like rRNA process 99.9 2.4E-26 5.2E-31 206.6 17.3 282 182-606 60-344 (433)
93 KOG0772 Uncharacterized conser 99.9 1.1E-25 2.4E-30 211.1 21.9 290 53-352 163-484 (641)
94 PTZ00421 coronin; Provisional 99.9 3.2E-24 6.8E-29 217.3 33.8 208 52-264 70-291 (493)
95 KOG0647 mRNA export protein (c 99.9 1E-24 2.2E-29 191.7 24.9 274 187-552 26-311 (347)
96 PTZ00420 coronin; Provisional 99.9 1.9E-23 4.1E-28 212.4 37.8 124 136-263 65-197 (568)
97 KOG0305 Anaphase promoting com 99.9 2.4E-24 5.3E-29 209.7 29.2 275 105-523 182-463 (484)
98 KOG0973 Histone transcription 99.9 7E-25 1.5E-29 224.4 25.9 209 15-252 11-238 (942)
99 KOG1446 Histone H3 (Lys4) meth 99.9 5.3E-23 1.2E-27 182.8 33.9 291 53-355 10-303 (311)
100 KOG0288 WD40 repeat protein Ti 99.9 1.1E-25 2.3E-30 205.9 17.2 290 50-518 168-458 (459)
101 KOG0640 mRNA cleavage stimulat 99.9 2.8E-24 6.1E-29 189.4 25.1 297 139-562 106-424 (430)
102 KOG0274 Cdc4 and related F-box 99.9 3.2E-24 6.9E-29 217.3 29.1 277 56-357 207-484 (537)
103 KOG1445 Tumor-specific antigen 99.9 3.2E-23 7E-28 199.2 33.7 152 447-600 627-787 (1012)
104 KOG0308 Conserved WD40 repeat- 99.9 6E-25 1.3E-29 212.0 21.6 339 67-478 35-394 (735)
105 KOG0301 Phospholipase A2-activ 99.9 3.1E-24 6.7E-29 208.7 26.6 282 179-607 5-288 (745)
106 KOG0299 U3 snoRNP-associated p 99.9 8.7E-24 1.9E-28 196.2 27.9 288 182-604 136-453 (479)
107 KOG0289 mRNA splicing factor [ 99.9 4.4E-24 9.5E-29 196.5 25.4 286 11-309 214-504 (506)
108 KOG0305 Anaphase promoting com 99.9 4.4E-24 9.6E-29 207.9 26.9 271 21-355 182-461 (484)
109 PTZ00421 coronin; Provisional 99.9 2.1E-23 4.6E-28 211.3 31.4 202 56-263 19-245 (493)
110 PTZ00420 coronin; Provisional 99.9 2.7E-23 5.8E-28 211.3 32.0 222 37-264 54-294 (568)
111 KOG1332 Vesicle coat complex C 99.9 1.9E-24 4.2E-29 184.4 19.0 267 143-566 9-288 (299)
112 KOG0308 Conserved WD40 repeat- 99.9 2.3E-24 5E-29 208.0 21.4 329 150-606 29-392 (735)
113 KOG2096 WD40 repeat protein [G 99.9 5.2E-23 1.1E-27 182.2 27.7 298 183-605 81-400 (420)
114 KOG1446 Histone H3 (Lys4) meth 99.9 7.6E-22 1.6E-26 175.5 34.2 284 15-312 13-304 (311)
115 KOG1407 WD40 repeat protein [F 99.9 1.7E-23 3.8E-28 180.3 22.3 235 13-254 17-293 (313)
116 KOG1332 Vesicle coat complex C 99.9 6.5E-24 1.4E-28 181.2 19.2 253 230-606 8-285 (299)
117 KOG0294 WD40 repeat-containing 99.9 1.2E-22 2.5E-27 180.0 26.5 265 181-587 36-306 (362)
118 KOG1036 Mitotic spindle checkp 99.9 9.7E-23 2.1E-27 180.2 25.4 271 188-554 13-294 (323)
119 KOG0264 Nucleosome remodeling 99.9 1.9E-23 4.1E-28 194.1 22.0 265 231-607 122-404 (422)
120 KOG0294 WD40 repeat-containing 99.9 5.9E-23 1.3E-27 181.8 23.6 246 50-357 36-283 (362)
121 KOG0264 Nucleosome remodeling 99.9 3.2E-23 6.9E-28 192.6 21.9 261 55-355 122-404 (422)
122 KOG0646 WD40 repeat protein [G 99.9 3.1E-22 6.7E-27 186.4 25.8 292 127-545 20-330 (476)
123 KOG0647 mRNA export protein (c 99.9 7.4E-22 1.6E-26 173.9 25.7 279 143-509 25-311 (347)
124 KOG0650 WD40 repeat nucleolar 99.9 2.2E-22 4.9E-27 192.5 22.9 312 52-561 395-732 (733)
125 KOG2055 WD40 repeat protein [G 99.9 1.6E-21 3.4E-26 181.3 25.5 286 58-563 214-511 (514)
126 KOG0269 WD40 repeat-containing 99.9 2.1E-22 4.6E-27 198.4 20.4 285 235-603 41-336 (839)
127 KOG1963 WD40 repeat protein [G 99.9 4.3E-19 9.3E-24 178.4 41.2 457 21-565 21-539 (792)
128 KOG0321 WD40 repeat-containing 99.9 1.9E-21 4.2E-26 187.6 23.0 321 151-565 55-392 (720)
129 KOG0269 WD40 repeat-containing 99.9 1.1E-21 2.3E-26 193.4 21.6 282 58-352 40-337 (839)
130 KOG1538 Uncharacterized conser 99.9 4E-20 8.7E-25 179.1 31.6 268 20-310 16-292 (1081)
131 KOG4283 Transcription-coupled 99.9 1.9E-20 4.1E-25 164.3 25.8 303 13-354 40-364 (397)
132 KOG4283 Transcription-coupled 99.9 1.2E-20 2.7E-25 165.5 23.9 302 142-563 40-364 (397)
133 KOG1445 Tumor-specific antigen 99.9 1.7E-19 3.6E-24 173.9 33.8 188 28-219 43-249 (1012)
134 KOG1036 Mitotic spindle checkp 99.9 3.2E-20 6.9E-25 164.4 26.6 281 145-511 13-294 (323)
135 KOG2445 Nuclear pore complex c 99.9 2.3E-20 4.9E-25 165.0 23.7 270 185-606 10-317 (361)
136 KOG0321 WD40 repeat-containing 99.9 1E-20 2.2E-25 182.6 23.3 300 53-358 43-394 (720)
137 KOG2445 Nuclear pore complex c 99.9 7.4E-20 1.6E-24 161.7 26.0 270 52-355 8-318 (361)
138 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.1E-18 2.4E-23 170.7 37.4 286 160-587 3-299 (300)
139 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1E-18 2.2E-23 170.9 37.1 185 69-263 1-187 (300)
140 KOG0639 Transducin-like enhanc 99.9 3E-20 6.4E-25 174.3 21.7 284 185-606 416-703 (705)
141 KOG1034 Transcriptional repres 99.9 5E-20 1.1E-24 164.2 19.9 330 97-521 35-383 (385)
142 KOG0302 Ribosome Assembly prot 99.9 3.5E-20 7.6E-25 168.1 19.0 209 53-264 147-379 (440)
143 KOG0267 Microtubule severing p 99.9 1.3E-21 2.8E-26 191.3 10.5 218 29-254 41-259 (825)
144 KOG0650 WD40 repeat nucleolar 99.9 1.6E-19 3.5E-24 173.1 24.4 320 179-605 391-733 (733)
145 KOG0646 WD40 repeat protein [G 99.9 9.8E-20 2.1E-24 169.9 21.8 224 16-247 81-333 (476)
146 COG2319 FOG: WD40 repeat [Gene 99.9 1.8E-16 3.9E-21 163.3 48.8 376 52-565 60-443 (466)
147 KOG1274 WD40 repeat protein [G 99.9 4.1E-19 8.8E-24 178.9 27.4 243 14-264 11-263 (933)
148 KOG1274 WD40 repeat protein [G 99.8 6.1E-19 1.3E-23 177.6 26.9 243 322-607 11-262 (933)
149 KOG4328 WD40 protein [Function 99.8 4.7E-19 1E-23 164.8 22.6 297 184-563 182-494 (498)
150 COG2319 FOG: WD40 repeat [Gene 99.8 1.4E-15 2.9E-20 156.7 49.5 371 14-522 63-443 (466)
151 KOG1273 WD40 repeat protein [G 99.8 3.7E-18 8E-23 151.5 25.4 279 19-311 26-322 (405)
152 KOG1009 Chromatin assembly com 99.8 8.6E-19 1.9E-23 160.8 22.1 119 145-263 13-153 (434)
153 KOG2055 WD40 repeat protein [G 99.8 2E-18 4.2E-23 160.9 24.6 287 188-607 213-512 (514)
154 KOG0639 Transducin-like enhanc 99.8 3.9E-19 8.5E-24 166.9 20.1 277 16-309 419-702 (705)
155 KOG4378 Nuclear protein COP1 [ 99.8 6.7E-19 1.4E-23 165.2 21.3 287 127-503 14-305 (673)
156 KOG4328 WD40 protein [Function 99.8 3.6E-18 7.7E-23 159.1 23.0 300 46-353 175-493 (498)
157 KOG1538 Uncharacterized conser 99.8 2.5E-18 5.5E-23 166.8 22.0 276 147-520 14-292 (1081)
158 KOG0302 Ribosome Assembly prot 99.8 3.5E-18 7.7E-23 155.2 21.2 265 231-605 149-437 (440)
159 KOG0303 Actin-binding protein 99.8 8.6E-18 1.9E-22 153.6 22.5 214 50-312 74-295 (472)
160 KOG1273 WD40 repeat protein [G 99.8 1.2E-17 2.5E-22 148.3 22.7 282 60-355 26-322 (405)
161 KOG0267 Microtubule severing p 99.8 5.8E-20 1.3E-24 179.9 8.8 204 52-263 23-226 (825)
162 KOG1524 WD40 repeat-containing 99.8 7.9E-17 1.7E-21 152.8 28.2 206 30-260 78-283 (737)
163 KOG4378 Nuclear protein COP1 [ 99.8 2.1E-17 4.5E-22 155.2 22.5 294 28-334 3-303 (673)
164 KOG1963 WD40 repeat protein [G 99.8 2.7E-14 5.8E-19 144.3 43.4 472 53-608 12-539 (792)
165 KOG0270 WD40 repeat-containing 99.8 1.5E-17 3.2E-22 154.5 18.5 252 68-395 191-449 (463)
166 KOG1009 Chromatin assembly com 99.8 1.8E-16 3.9E-21 145.8 25.3 159 57-264 13-196 (434)
167 KOG1007 WD repeat protein TSSC 99.8 1.1E-16 2.4E-21 140.5 21.8 289 37-352 40-358 (370)
168 KOG1034 Transcriptional repres 99.8 2.6E-16 5.6E-21 140.8 22.1 295 52-354 33-382 (385)
169 KOG0307 Vesicle coat complex C 99.8 2.6E-17 5.6E-22 170.3 17.8 250 189-565 65-328 (1049)
170 KOG0270 WD40 repeat-containing 99.8 1.2E-16 2.6E-21 148.5 20.1 231 293-608 192-450 (463)
171 KOG2919 Guanine nucleotide-bin 99.7 3.1E-16 6.6E-21 139.9 21.3 274 60-344 52-359 (406)
172 KOG0649 WD40 repeat protein [G 99.7 9.2E-16 2E-20 131.5 23.3 234 59-311 12-274 (325)
173 KOG0303 Actin-binding protein 99.7 1.2E-16 2.6E-21 146.2 18.9 207 140-356 76-295 (472)
174 KOG1007 WD repeat protein TSSC 99.7 3.6E-16 7.7E-21 137.4 21.0 243 16-263 63-361 (370)
175 KOG0322 G-protein beta subunit 99.7 2.9E-16 6.3E-21 136.3 18.3 304 180-563 6-322 (323)
176 KOG0771 Prolactin regulatory e 99.7 8.9E-17 1.9E-21 148.9 16.1 197 61-264 148-355 (398)
177 KOG4497 Uncharacterized conser 99.7 1.6E-15 3.4E-20 135.7 22.9 221 21-261 13-238 (447)
178 KOG0307 Vesicle coat complex C 99.7 3.4E-17 7.4E-22 169.4 14.1 222 37-264 90-328 (1049)
179 KOG2919 Guanine nucleotide-bin 99.7 3.5E-15 7.6E-20 133.3 24.1 236 21-264 54-328 (406)
180 KOG0644 Uncharacterized conser 99.7 3.8E-17 8.2E-22 162.7 13.0 240 52-355 185-426 (1113)
181 KOG1188 WD40 repeat protein [G 99.7 9.4E-16 2E-20 138.0 20.1 189 35-224 48-248 (376)
182 KOG1517 Guanine nucleotide bin 99.7 2.1E-15 4.6E-20 154.2 24.8 301 190-566 1066-1383(1387)
183 KOG0322 G-protein beta subunit 99.7 9.2E-16 2E-20 133.2 17.0 69 450-520 254-322 (323)
184 KOG4227 WD40 repeat protein [G 99.7 3.7E-15 8.1E-20 136.2 21.7 170 53-264 52-226 (609)
185 PRK01742 tolB translocation pr 99.7 2.9E-15 6.2E-20 152.6 23.1 212 37-263 184-401 (429)
186 KOG0644 Uncharacterized conser 99.7 2.1E-16 4.5E-21 157.5 13.0 281 141-563 186-467 (1113)
187 KOG0642 Cell-cycle nuclear pro 99.7 7.3E-16 1.6E-20 147.6 16.1 267 180-522 286-562 (577)
188 PRK11028 6-phosphogluconolacto 99.7 2.9E-13 6.4E-18 133.7 35.4 283 160-565 4-305 (330)
189 PRK11028 6-phosphogluconolacto 99.7 3E-13 6.6E-18 133.6 32.1 269 35-312 10-305 (330)
190 KOG1188 WD40 repeat protein [G 99.7 1.3E-14 2.7E-19 130.9 18.9 184 126-357 51-244 (376)
191 PRK01742 tolB translocation pr 99.7 1E-14 2.2E-19 148.5 21.0 213 16-244 203-426 (429)
192 KOG4227 WD40 repeat protein [G 99.6 7.2E-14 1.6E-18 127.9 23.1 298 140-563 51-386 (609)
193 KOG1517 Guanine nucleotide bin 99.6 7.1E-14 1.5E-18 143.3 24.5 285 18-311 1066-1381(1387)
194 KOG1587 Cytoplasmic dynein int 99.6 4.1E-13 8.9E-18 135.7 28.5 285 210-608 222-517 (555)
195 KOG1240 Protein kinase contain 99.6 4.2E-13 9.1E-18 140.0 27.7 177 47-264 1038-1226(1431)
196 KOG1523 Actin-related protein 99.6 1.3E-13 2.8E-18 123.3 18.9 163 96-262 6-175 (361)
197 KOG0642 Cell-cycle nuclear pro 99.6 3.8E-14 8.3E-19 136.0 16.4 205 52-263 289-561 (577)
198 KOG1334 WD40 repeat protein [G 99.6 4.3E-14 9.4E-19 133.2 15.7 301 182-606 136-465 (559)
199 KOG0290 Conserved WD40 repeat- 99.6 5.1E-13 1.1E-17 117.9 20.2 236 19-259 99-361 (364)
200 KOG1523 Actin-related protein 99.6 1.9E-13 4E-18 122.4 17.6 204 57-264 10-237 (361)
201 KOG1587 Cytoplasmic dynein int 99.6 1.2E-12 2.6E-17 132.3 25.8 272 169-521 223-516 (555)
202 KOG1524 WD40 repeat-containing 99.6 9.9E-12 2.1E-16 118.8 29.6 238 6-259 4-251 (737)
203 KOG1310 WD40 repeat protein [G 99.6 1.2E-13 2.6E-18 132.0 16.8 213 49-265 42-305 (758)
204 KOG1334 WD40 repeat protein [G 99.6 5.7E-14 1.2E-18 132.4 14.4 293 52-354 137-465 (559)
205 KOG2110 Uncharacterized conser 99.5 6.7E-11 1.4E-15 108.4 32.5 227 24-264 13-249 (391)
206 KOG0771 Prolactin regulatory e 99.5 1.7E-13 3.8E-18 127.3 16.1 195 20-216 148-352 (398)
207 KOG1310 WD40 repeat protein [G 99.5 1.1E-13 2.5E-18 132.1 14.9 135 180-355 42-178 (758)
208 KOG2394 WD40 protein DMR-N9 [G 99.5 6.8E-13 1.5E-17 126.7 19.8 224 10-243 117-384 (636)
209 PRK05137 tolB translocation pr 99.5 3.3E-12 7.2E-17 130.7 26.5 215 38-263 183-412 (435)
210 PRK03629 tolB translocation pr 99.5 2.2E-12 4.7E-17 131.2 24.9 216 38-263 180-406 (429)
211 KOG0649 WD40 repeat protein [G 99.5 4.8E-12 1E-16 109.0 22.6 149 450-607 117-274 (325)
212 KOG2394 WD40 protein DMR-N9 [G 99.5 9.7E-14 2.1E-18 132.4 13.6 94 491-587 290-383 (636)
213 PRK04922 tolB translocation pr 99.5 2.2E-12 4.7E-17 131.8 24.7 216 38-263 185-411 (433)
214 KOG0290 Conserved WD40 repeat- 99.5 1.1E-12 2.5E-17 115.8 18.9 245 58-355 45-318 (364)
215 PRK02889 tolB translocation pr 99.5 2.5E-12 5.3E-17 130.9 24.5 207 37-255 176-392 (427)
216 KOG1912 WD40 repeat protein [G 99.5 1.2E-11 2.5E-16 123.4 27.6 249 6-264 7-305 (1062)
217 KOG4497 Uncharacterized conser 99.5 2.1E-12 4.6E-17 116.0 20.1 298 23-348 55-425 (447)
218 PRK03629 tolB translocation pr 99.5 3.7E-12 8.1E-17 129.4 24.7 216 18-244 200-428 (429)
219 KOG2111 Uncharacterized conser 99.5 8.9E-11 1.9E-15 105.5 29.8 241 16-265 5-258 (346)
220 KOG2111 Uncharacterized conser 99.5 1.3E-10 2.7E-15 104.5 30.7 101 465-565 155-257 (346)
221 PRK02889 tolB translocation pr 99.5 3.7E-12 8E-17 129.6 23.1 219 16-244 195-425 (427)
222 PRK01029 tolB translocation pr 99.5 2.3E-11 5.1E-16 123.1 25.6 219 38-263 166-403 (428)
223 PRK05137 tolB translocation pr 99.5 1.5E-11 3.2E-16 125.9 24.3 217 16-243 201-432 (435)
224 KOG2110 Uncharacterized conser 99.4 1.7E-12 3.6E-17 118.7 13.8 126 3-133 117-248 (391)
225 PF08662 eIF2A: Eukaryotic tra 99.4 1.6E-11 3.5E-16 109.6 19.9 152 104-263 9-179 (194)
226 KOG0974 WD-repeat protein WDR6 99.4 3E-12 6.5E-17 132.0 16.7 148 453-607 139-288 (967)
227 KOG1272 WD40-repeat-containing 99.4 8.9E-13 1.9E-17 123.7 11.6 228 60-309 132-360 (545)
228 PRK04922 tolB translocation pr 99.4 2.2E-11 4.8E-16 124.4 22.9 214 18-243 205-432 (433)
229 KOG1409 Uncharacterized conser 99.4 6E-11 1.3E-15 107.6 20.9 253 182-565 18-271 (404)
230 TIGR02800 propeller_TolB tol-p 99.4 9.2E-11 2E-15 120.3 25.2 209 37-255 170-386 (417)
231 PF04762 IKI3: IKI3 family; I 99.4 7.1E-07 1.5E-11 98.1 54.4 434 57-563 75-563 (928)
232 PF08662 eIF2A: Eukaryotic tra 99.4 7.5E-11 1.6E-15 105.3 19.5 147 453-607 11-179 (194)
233 KOG1240 Protein kinase contain 99.4 1.3E-10 2.7E-15 121.9 23.5 254 231-566 1046-1336(1431)
234 PRK01029 tolB translocation pr 99.4 2.5E-10 5.5E-15 115.6 25.2 218 20-245 188-426 (428)
235 KOG2315 Predicted translation 99.3 7E-09 1.5E-13 100.5 31.9 110 447-564 270-390 (566)
236 PRK04792 tolB translocation pr 99.3 5E-10 1.1E-14 114.4 25.7 215 38-263 199-425 (448)
237 PF02239 Cytochrom_D1: Cytochr 99.3 3.6E-09 7.7E-14 104.4 30.4 329 160-566 8-349 (369)
238 PRK00178 tolB translocation pr 99.3 6.2E-10 1.4E-14 114.2 25.8 215 38-263 180-406 (430)
239 KOG1354 Serine/threonine prote 99.3 7.5E-10 1.6E-14 100.5 22.2 116 449-565 215-360 (433)
240 PRK04792 tolB translocation pr 99.3 3.7E-10 8E-15 115.4 22.7 214 20-243 221-446 (448)
241 KOG2321 WD40 repeat protein [G 99.3 1.3E-09 2.7E-14 105.6 24.0 201 55-264 49-259 (703)
242 KOG1409 Uncharacterized conser 99.3 1.1E-10 2.3E-15 106.0 15.4 213 46-264 13-271 (404)
243 PRK00178 tolB translocation pr 99.3 8.8E-10 1.9E-14 113.1 24.6 217 18-244 200-428 (430)
244 PF10282 Lactonase: Lactonase, 99.3 9.9E-09 2.1E-13 101.5 31.1 246 16-264 36-323 (345)
245 PF10282 Lactonase: Lactonase, 99.3 3.1E-07 6.8E-12 90.9 41.6 183 79-263 13-222 (345)
246 KOG2139 WD40 repeat protein [G 99.3 7E-09 1.5E-13 95.0 26.6 236 21-263 103-383 (445)
247 COG5354 Uncharacterized protei 99.3 2.4E-08 5.3E-13 95.7 30.9 111 447-564 274-395 (561)
248 KOG0974 WD-repeat protein WDR6 99.3 1.1E-07 2.3E-12 99.2 37.8 182 30-219 102-289 (967)
249 KOG2321 WD40 repeat protein [G 99.3 3.3E-09 7.1E-14 102.8 24.4 279 16-314 51-346 (703)
250 KOG2139 WD40 repeat protein [G 99.3 1.7E-09 3.6E-14 99.0 21.0 218 19-263 198-431 (445)
251 PF04762 IKI3: IKI3 family; I 99.2 6.1E-06 1.3E-10 90.9 51.3 320 12-355 71-456 (928)
252 KOG1272 WD40-repeat-containing 99.2 3.5E-11 7.5E-16 113.2 9.0 228 19-261 132-360 (545)
253 KOG3914 WD repeat protein WDR4 99.2 3E-10 6.6E-15 105.5 14.1 155 450-607 65-223 (390)
254 TIGR02800 propeller_TolB tol-p 99.2 2.3E-09 4.9E-14 110.0 22.0 187 18-210 191-386 (417)
255 PF02239 Cytochrom_D1: Cytochr 99.2 4.3E-08 9.3E-13 96.8 29.9 310 35-356 14-348 (369)
256 KOG3881 Uncharacterized conser 99.2 5.7E-09 1.2E-13 96.6 21.1 203 57-264 105-321 (412)
257 COG4946 Uncharacterized protei 99.2 1.1E-06 2.4E-11 83.8 36.4 117 447-567 359-480 (668)
258 KOG3881 Uncharacterized conser 99.2 7.9E-09 1.7E-13 95.7 21.3 255 233-565 55-321 (412)
259 COG5354 Uncharacterized protei 99.1 3.2E-07 7E-12 88.2 29.6 236 15-263 31-306 (561)
260 KOG1354 Serine/threonine prote 99.1 2.2E-08 4.7E-13 91.2 20.5 248 57-313 25-361 (433)
261 KOG4547 WD40 repeat-containing 99.1 1.1E-08 2.4E-13 100.0 19.1 190 66-264 2-221 (541)
262 PRK04043 tolB translocation pr 99.0 8.9E-08 1.9E-12 96.4 24.8 203 38-254 170-388 (419)
263 KOG2314 Translation initiation 99.0 3.2E-07 7E-12 89.0 26.9 310 192-556 214-559 (698)
264 KOG2315 Predicted translation 99.0 7.1E-07 1.5E-11 87.0 29.2 309 20-355 38-390 (566)
265 PRK04043 tolB translocation pr 99.0 8E-08 1.7E-12 96.8 22.8 183 18-209 189-388 (419)
266 KOG0309 Conserved WD40 repeat- 99.0 4.1E-09 8.9E-14 105.0 13.0 288 57-355 24-339 (1081)
267 KOG0280 Uncharacterized conser 99.0 6.8E-08 1.5E-12 86.3 18.8 121 139-263 159-284 (339)
268 COG2706 3-carboxymuconate cycl 99.0 9.9E-06 2.1E-10 75.3 33.4 274 36-315 15-325 (346)
269 PF07433 DUF1513: Protein of u 99.0 6E-07 1.3E-11 83.3 25.5 237 12-258 2-280 (305)
270 KOG4547 WD40 repeat-containing 98.9 6.6E-08 1.4E-12 94.6 17.9 147 456-607 67-220 (541)
271 TIGR02658 TTQ_MADH_Hv methylam 98.9 3.4E-06 7.4E-11 81.4 28.4 244 13-274 45-338 (352)
272 COG4946 Uncharacterized protei 98.9 8.9E-06 1.9E-10 77.8 29.4 217 24-252 274-507 (668)
273 COG2706 3-carboxymuconate cycl 98.9 9.1E-06 2E-10 75.5 28.3 277 78-355 15-321 (346)
274 KOG4190 Uncharacterized conser 98.9 1E-08 2.3E-13 98.8 9.6 203 50-262 728-947 (1034)
275 KOG1912 WD40 repeat protein [G 98.9 4.4E-06 9.6E-11 84.6 27.8 153 102-262 17-185 (1062)
276 PLN02919 haloacid dehalogenase 98.8 3.7E-06 8E-11 94.4 30.4 240 19-264 570-889 (1057)
277 TIGR02658 TTQ_MADH_Hv methylam 98.8 2.3E-05 4.9E-10 75.8 31.3 252 37-311 27-330 (352)
278 KOG3914 WD repeat protein WDR4 98.8 1.4E-07 3E-12 88.1 15.1 97 164-264 128-224 (390)
279 KOG2314 Translation initiation 98.8 4.2E-06 9E-11 81.5 25.4 305 19-346 213-558 (698)
280 KOG0309 Conserved WD40 repeat- 98.8 8.2E-08 1.8E-12 96.0 13.7 287 233-607 24-339 (1081)
281 KOG1064 RAVE (regulator of V-A 98.8 5.9E-08 1.3E-12 106.1 13.4 217 69-313 2180-2400(2439)
282 COG5170 CDC55 Serine/threonine 98.8 2.6E-07 5.6E-12 83.2 15.1 115 450-565 224-368 (460)
283 KOG1064 RAVE (regulator of V-A 98.8 4.9E-08 1.1E-12 106.7 12.0 186 56-264 2207-2399(2439)
284 KOG2041 WD40 repeat protein [G 98.8 0.0001 2.2E-09 74.4 33.5 171 58-264 15-187 (1189)
285 PF00400 WD40: WD domain, G-be 98.7 1.3E-08 2.8E-13 64.5 4.2 37 49-85 3-39 (39)
286 PF15492 Nbas_N: Neuroblastoma 98.7 4E-05 8.6E-10 69.2 24.8 225 22-263 3-259 (282)
287 KOG2041 WD40 repeat protein [G 98.6 9.6E-06 2.1E-10 81.4 22.6 297 233-608 14-338 (1189)
288 KOG0280 Uncharacterized conser 98.6 1E-06 2.2E-11 79.0 14.2 135 451-587 125-262 (339)
289 TIGR03300 assembly_YfgL outer 98.6 0.00013 2.9E-09 73.5 31.3 97 160-263 67-163 (377)
290 KOG4532 WD40-like repeat conta 98.6 1.4E-05 3E-10 70.9 20.1 117 450-566 161-284 (344)
291 PF08450 SGL: SMP-30/Gluconola 98.6 0.00018 3.8E-09 67.7 29.8 219 22-249 5-241 (246)
292 PLN02919 haloacid dehalogenase 98.5 2.9E-05 6.3E-10 87.4 25.8 199 18-222 625-892 (1057)
293 PF00400 WD40: WD domain, G-be 98.5 5.5E-07 1.2E-11 56.9 6.8 36 484-519 4-39 (39)
294 TIGR03300 assembly_YfgL outer 98.5 0.00033 7.3E-09 70.6 30.3 135 459-604 241-376 (377)
295 KOG4190 Uncharacterized conser 98.5 1.8E-06 4E-11 83.7 12.4 209 138-356 728-949 (1034)
296 KOG4532 WD40-like repeat conta 98.5 6.5E-05 1.4E-09 66.8 20.2 191 68-264 83-283 (344)
297 KOG4714 Nucleoporin [Nuclear s 98.4 4.7E-07 1E-11 79.6 6.8 152 454-608 96-255 (319)
298 KOG4714 Nucleoporin [Nuclear s 98.4 1.1E-05 2.4E-10 71.2 14.7 91 171-263 162-254 (319)
299 COG0823 TolB Periplasmic compo 98.4 7.8E-06 1.7E-10 81.9 15.7 180 21-206 197-387 (425)
300 PF15492 Nbas_N: Neuroblastoma 98.4 0.00042 9E-09 62.8 23.9 148 194-346 3-169 (282)
301 COG5170 CDC55 Serine/threonine 98.3 4.8E-05 1E-09 68.9 15.9 157 447-606 172-366 (460)
302 COG0823 TolB Periplasmic compo 98.3 4E-05 8.7E-10 76.8 17.2 194 52-254 187-390 (425)
303 KOG2695 WD40 repeat protein [G 98.2 3.4E-06 7.4E-11 77.3 7.9 139 464-607 229-376 (425)
304 PF08450 SGL: SMP-30/Gluconola 98.2 0.0018 3.8E-08 61.0 26.5 200 61-276 3-222 (246)
305 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.0039 8.4E-08 62.0 29.6 303 25-344 1-347 (353)
306 PF07433 DUF1513: Protein of u 98.2 0.0015 3.2E-08 61.2 23.2 184 21-207 55-275 (305)
307 PF11768 DUF3312: Protein of u 98.1 7.8E-05 1.7E-09 74.2 13.7 90 473-565 240-330 (545)
308 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.0016 3.4E-08 64.8 23.4 233 16-252 42-346 (353)
309 KOG2066 Vacuolar assembly/sort 98.0 0.00052 1.1E-08 70.6 18.8 181 287-564 43-233 (846)
310 KOG1920 IkappaB kinase complex 98.0 0.016 3.6E-07 62.9 29.9 200 58-263 69-322 (1265)
311 KOG0882 Cyclophilin-related pe 97.9 0.00027 5.8E-09 67.6 14.2 207 51-263 47-305 (558)
312 KOG2114 Vacuolar assembly/sort 97.9 0.0019 4E-08 67.2 20.2 131 448-580 126-258 (933)
313 KOG2695 WD40 repeat protein [G 97.9 0.00011 2.3E-09 67.8 9.6 146 37-227 234-385 (425)
314 PF11768 DUF3312: Protein of u 97.8 0.0002 4.3E-09 71.5 12.1 76 443-522 255-330 (545)
315 KOG0882 Cyclophilin-related pe 97.8 0.00021 4.5E-09 68.3 11.3 213 55-274 7-239 (558)
316 KOG2066 Vacuolar assembly/sort 97.8 0.0017 3.7E-08 66.9 18.1 146 156-311 82-233 (846)
317 KOG2114 Vacuolar assembly/sort 97.8 0.0083 1.8E-07 62.6 22.9 194 64-263 30-243 (933)
318 PF13360 PQQ_2: PQQ-like domai 97.7 0.012 2.6E-07 55.0 21.9 213 37-264 3-231 (238)
319 PF06977 SdiA-regulated: SdiA- 97.7 0.025 5.3E-07 52.3 22.7 182 19-206 24-239 (248)
320 KOG1920 IkappaB kinase complex 97.7 0.009 1.9E-07 64.8 22.0 201 17-221 69-325 (1265)
321 PF14870 PSII_BNR: Photosynthe 97.6 0.012 2.7E-07 55.9 20.3 192 13-215 100-301 (302)
322 PRK13616 lipoprotein LpqB; Pro 97.6 0.024 5.3E-07 59.8 23.7 180 57-244 349-551 (591)
323 KOG3617 WD40 and TPR repeat-co 97.6 0.0029 6.3E-08 65.5 15.8 105 151-263 21-131 (1416)
324 COG3391 Uncharacterized conser 97.5 0.065 1.4E-06 53.8 25.4 233 5-244 62-309 (381)
325 KOG3621 WD40 repeat-containing 97.5 0.00047 1E-08 69.9 9.7 112 453-565 39-155 (726)
326 smart00320 WD40 WD40 repeats. 97.5 0.00018 3.9E-09 44.6 4.4 35 51-85 6-40 (40)
327 KOG3617 WD40 and TPR repeat-co 97.4 0.021 4.5E-07 59.6 19.8 111 16-133 15-131 (1416)
328 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.012 2.6E-07 45.9 14.0 91 460-560 16-110 (111)
329 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.013 2.8E-07 45.7 14.1 89 504-602 16-109 (111)
330 PRK11138 outer membrane biogen 97.4 0.17 3.7E-06 51.3 26.6 251 35-309 128-392 (394)
331 PRK11138 outer membrane biogen 97.4 0.2 4.3E-06 50.9 29.5 137 459-606 256-393 (394)
332 COG3490 Uncharacterized protei 97.4 0.045 9.7E-07 49.9 19.1 210 36-261 90-346 (366)
333 PRK13616 lipoprotein LpqB; Pro 97.4 0.016 3.4E-07 61.2 19.2 134 19-160 352-511 (591)
334 KOG1275 PAB-dependent poly(A) 97.3 0.006 1.3E-07 64.0 14.3 182 29-216 148-340 (1118)
335 PRK02888 nitrous-oxide reducta 97.2 0.024 5.2E-07 58.5 17.6 186 65-253 200-451 (635)
336 PF13360 PQQ_2: PQQ-like domai 97.2 0.091 2E-06 48.9 20.9 185 161-357 39-232 (238)
337 KOG1832 HIV-1 Vpr-binding prot 97.2 0.00071 1.5E-08 70.3 6.2 160 50-264 1094-1256(1516)
338 KOG1645 RING-finger-containing 97.2 0.039 8.4E-07 52.6 16.9 92 170-265 175-268 (463)
339 PF10647 Gmad1: Lipoprotein Lp 97.1 0.11 2.4E-06 48.7 20.4 148 18-168 25-188 (253)
340 PF02897 Peptidase_S9_N: Proly 97.1 0.14 3.1E-06 52.3 23.1 116 60-177 126-261 (414)
341 COG3386 Gluconolactonase [Carb 97.1 0.26 5.7E-06 47.4 22.6 215 24-248 32-270 (307)
342 KOG1275 PAB-dependent poly(A) 97.1 0.018 3.9E-07 60.6 15.3 176 75-261 153-340 (1118)
343 PF02897 Peptidase_S9_N: Proly 97.1 0.45 9.8E-06 48.6 27.9 238 21-263 128-404 (414)
344 smart00320 WD40 WD40 repeats. 97.1 0.0016 3.4E-08 40.0 5.1 36 181-216 5-40 (40)
345 PF07995 GSDH: Glucose / Sorbo 97.0 0.37 8.1E-06 47.3 23.9 236 18-258 3-330 (331)
346 KOG1645 RING-finger-containing 97.0 0.079 1.7E-06 50.7 17.4 79 52-177 188-267 (463)
347 PF03178 CPSF_A: CPSF A subuni 97.0 0.14 3.1E-06 50.2 20.2 134 469-608 62-203 (321)
348 KOG3621 WD40 repeat-containing 96.9 0.0086 1.9E-07 61.1 10.9 117 491-607 33-154 (726)
349 PF14583 Pectate_lyase22: Olig 96.9 0.34 7.4E-06 47.3 21.2 237 22-262 86-380 (386)
350 PF04053 Coatomer_WDAD: Coatom 96.9 0.13 2.8E-06 52.2 19.1 135 19-173 35-170 (443)
351 KOG2444 WD40 repeat protein [G 96.8 0.0037 8.1E-08 55.0 6.5 106 459-565 70-178 (238)
352 COG3391 Uncharacterized conser 96.8 0.69 1.5E-05 46.5 28.1 199 60-263 76-283 (381)
353 PF04841 Vps16_N: Vps16, N-ter 96.7 0.67 1.5E-05 47.0 23.1 174 38-222 62-250 (410)
354 KOG1832 HIV-1 Vpr-binding prot 96.7 0.0022 4.7E-08 66.8 5.1 147 448-607 1102-1255(1516)
355 KOG1897 Damage-specific DNA bi 96.7 1.2 2.7E-05 48.1 52.9 154 411-565 451-614 (1096)
356 KOG4640 Anaphase-promoting com 96.7 0.01 2.2E-07 59.9 9.4 92 450-544 23-115 (665)
357 PF06433 Me-amine-dh_H: Methyl 96.7 0.65 1.4E-05 44.5 23.9 99 37-139 17-132 (342)
358 KOG4640 Anaphase-promoting com 96.6 0.014 3.1E-07 58.9 9.6 74 492-567 21-95 (665)
359 PF06977 SdiA-regulated: SdiA- 96.5 0.67 1.5E-05 43.0 22.5 198 54-259 18-246 (248)
360 PF08553 VID27: VID27 cytoplas 96.4 0.12 2.5E-06 55.8 15.7 99 462-563 545-646 (794)
361 KOG2395 Protein involved in va 96.3 0.16 3.4E-06 50.6 14.8 114 447-563 375-499 (644)
362 KOG2079 Vacuolar assembly/sort 96.3 0.018 3.9E-07 61.8 8.8 103 501-607 97-203 (1206)
363 PF04053 Coatomer_WDAD: Coatom 96.3 0.35 7.5E-06 49.2 17.7 134 69-217 117-261 (443)
364 PF08596 Lgl_C: Lethal giant l 96.2 0.23 4.9E-06 49.7 15.9 114 450-564 4-173 (395)
365 PF04841 Vps16_N: Vps16, N-ter 96.2 1.7 3.7E-05 44.1 26.4 62 195-263 185-246 (410)
366 COG3490 Uncharacterized protei 96.1 0.47 1E-05 43.6 15.7 189 23-216 120-346 (366)
367 PF14583 Pectate_lyase22: Olig 96.1 1.6 3.4E-05 42.9 25.7 224 23-254 42-303 (386)
368 PF08553 VID27: VID27 cytoplas 96.1 1.2 2.7E-05 48.2 21.3 130 126-262 505-646 (794)
369 PRK02888 nitrous-oxide reducta 96.1 0.33 7.1E-06 50.5 16.4 150 17-177 235-405 (635)
370 PF10647 Gmad1: Lipoprotein Lp 96.0 0.46 1E-05 44.6 16.3 149 102-254 25-186 (253)
371 KOG2079 Vacuolar assembly/sort 96.0 0.03 6.5E-07 60.2 8.7 102 458-563 98-202 (1206)
372 PF06433 Me-amine-dh_H: Methyl 95.9 1.7 3.7E-05 41.8 25.5 141 79-264 17-166 (342)
373 PF12894 Apc4_WD40: Anaphase-p 95.7 0.036 7.9E-07 36.0 5.3 32 533-564 10-41 (47)
374 PF12894 Apc4_WD40: Anaphase-p 95.7 0.048 1E-06 35.4 5.7 34 188-222 11-44 (47)
375 PF03178 CPSF_A: CPSF A subuni 95.5 1.3 2.8E-05 43.5 17.9 152 445-602 86-260 (321)
376 KOG4499 Ca2+-binding protein R 95.4 1.9 4.2E-05 38.5 17.0 139 102-244 110-264 (310)
377 KOG1897 Damage-specific DNA bi 95.2 5.9 0.00013 43.2 49.6 148 454-606 781-941 (1096)
378 KOG4649 PQQ (pyrrolo-quinoline 95.2 2.4 5.1E-05 38.6 28.3 106 196-312 18-124 (354)
379 KOG1008 Uncharacterized conser 95.0 0.015 3.3E-07 58.7 2.6 187 159-354 71-274 (783)
380 PRK13684 Ycf48-like protein; P 95.0 4.1 8.9E-05 40.1 22.8 152 57-217 172-330 (334)
381 KOG2444 WD40 repeat protein [G 94.9 0.071 1.5E-06 47.2 6.1 139 463-607 34-177 (238)
382 COG3386 Gluconolactonase [Carb 94.9 4 8.6E-05 39.4 19.3 134 60-197 113-263 (307)
383 PF15390 DUF4613: Domain of un 94.5 2 4.3E-05 44.0 15.6 149 23-176 18-186 (671)
384 KOG4649 PQQ (pyrrolo-quinoline 94.4 3.9 8.6E-05 37.2 30.2 60 200-263 63-123 (354)
385 COG3204 Uncharacterized protei 94.3 4.5 9.8E-05 37.8 19.6 159 54-216 82-261 (316)
386 PHA02713 hypothetical protein; 94.0 7.1 0.00015 41.6 19.9 65 198-264 462-534 (557)
387 PF12234 Rav1p_C: RAVE protein 93.9 1.6 3.6E-05 45.9 14.3 106 455-563 37-155 (631)
388 COG3204 Uncharacterized protei 93.8 5.8 0.00013 37.1 16.2 115 449-564 87-210 (316)
389 TIGR02604 Piru_Ver_Nterm putat 93.8 3.4 7.4E-05 41.3 16.3 110 8-121 7-144 (367)
390 PLN00033 photosystem II stabil 93.5 8.3 0.00018 38.8 18.2 145 452-604 243-396 (398)
391 PHA02713 hypothetical protein; 93.3 1.1 2.4E-05 47.5 12.4 147 457-607 350-533 (557)
392 KOG2377 Uncharacterized conser 93.0 1.7 3.6E-05 42.9 11.7 109 232-344 65-173 (657)
393 TIGR02604 Piru_Ver_Nterm putat 93.0 5 0.00011 40.2 16.0 102 450-553 16-142 (367)
394 KOG2395 Protein involved in va 92.5 3.2 7E-05 41.8 13.1 66 148-216 433-498 (644)
395 PF07676 PD40: WD40-like Beta 92.5 0.44 9.6E-06 29.4 5.0 29 56-84 7-38 (39)
396 PF08596 Lgl_C: Lethal giant l 92.4 4.5 9.8E-05 40.6 14.6 113 493-608 3-174 (395)
397 PF10168 Nup88: Nuclear pore c 91.5 25 0.00054 38.5 24.8 22 329-350 289-310 (717)
398 PLN00033 photosystem II stabil 91.3 18 0.00038 36.5 22.8 147 60-215 241-396 (398)
399 PF12234 Rav1p_C: RAVE protein 91.3 9.6 0.00021 40.4 15.8 103 493-596 31-147 (631)
400 KOG1008 Uncharacterized conser 91.3 0.058 1.2E-06 54.8 -0.1 144 458-605 69-223 (783)
401 cd00216 PQQ_DH Dehydrogenases 90.3 26 0.00056 36.7 31.7 104 461-573 303-432 (488)
402 KOG4441 Proteins containing BT 89.6 30 0.00065 36.9 18.2 211 37-255 301-533 (571)
403 PF05694 SBP56: 56kDa selenium 89.4 9 0.0002 38.2 12.9 105 466-570 219-348 (461)
404 KOG2280 Vacuolar assembly/sort 89.2 25 0.00053 37.6 16.3 107 8-119 38-146 (829)
405 KOG4460 Nuclear pore complex, 89.0 12 0.00025 38.0 13.3 92 147-264 105-199 (741)
406 KOG3630 Nuclear pore complex, 89.0 6.9 0.00015 43.5 12.7 148 102-252 102-262 (1405)
407 PRK10115 protease 2; Provision 88.5 43 0.00093 36.8 30.2 236 21-263 131-394 (686)
408 KOG2377 Uncharacterized conser 88.4 8.8 0.00019 38.1 11.9 98 489-589 64-164 (657)
409 KOG3630 Nuclear pore complex, 88.3 3.2 6.9E-05 45.9 9.8 144 448-594 101-260 (1405)
410 PF07995 GSDH: Glucose / Sorbo 88.0 18 0.00038 35.6 14.4 104 450-555 4-134 (331)
411 PF07250 Glyoxal_oxid_N: Glyox 87.8 18 0.0004 33.4 13.2 141 82-227 49-206 (243)
412 PF10313 DUF2415: Uncharacteri 87.0 2.5 5.4E-05 26.7 4.9 30 190-219 2-34 (43)
413 PF10313 DUF2415: Uncharacteri 86.9 2.7 5.9E-05 26.5 5.0 31 492-522 1-34 (43)
414 KOG1916 Nuclear protein, conta 86.5 1.3 2.8E-05 47.4 5.6 58 29-87 196-265 (1283)
415 KOG1916 Nuclear protein, conta 86.3 1.2 2.7E-05 47.5 5.3 106 499-606 191-322 (1283)
416 KOG4659 Uncharacterized conser 86.2 70 0.0015 36.8 20.5 63 192-254 596-682 (1899)
417 PF07569 Hira: TUP1-like enhan 86.2 5.3 0.00012 36.4 8.9 66 499-565 18-96 (219)
418 PF07569 Hira: TUP1-like enhan 86.0 4 8.6E-05 37.2 8.0 57 64-120 17-86 (219)
419 KOG4441 Proteins containing BT 85.6 8.7 0.00019 40.9 11.4 140 458-602 380-536 (571)
420 PF08728 CRT10: CRT10; InterP 85.6 7.9 0.00017 41.5 10.8 105 458-563 113-245 (717)
421 PF10168 Nup88: Nuclear pore c 85.5 25 0.00054 38.5 14.9 95 446-565 83-180 (717)
422 PF14870 PSII_BNR: Photosynthe 85.1 37 0.00081 32.7 32.2 150 448-604 145-301 (302)
423 PF07676 PD40: WD40-like Beta 84.8 3.9 8.5E-05 25.1 5.3 25 98-122 6-30 (39)
424 PF00780 CNH: CNH domain; Int 84.7 37 0.0008 32.2 24.9 147 198-355 5-165 (275)
425 PF05694 SBP56: 56kDa selenium 84.2 49 0.0011 33.3 16.4 137 38-176 158-342 (461)
426 PF14761 HPS3_N: Hermansky-Pud 84.1 31 0.00068 30.9 13.4 58 76-134 35-97 (215)
427 TIGR03548 mutarot_permut cycli 82.5 42 0.0009 32.9 14.2 97 502-598 123-233 (323)
428 PF15390 DUF4613: Domain of un 82.2 45 0.00096 34.8 13.8 122 234-355 57-186 (671)
429 PHA03098 kelch-like protein; P 81.4 31 0.00066 36.7 13.8 145 458-607 342-511 (534)
430 PF14655 RAB3GAP2_N: Rab3 GTPa 81.3 6.6 0.00014 39.5 7.9 91 452-544 6-118 (415)
431 PHA02790 Kelch-like protein; P 81.2 36 0.00077 35.6 13.7 143 457-607 317-470 (480)
432 COG1506 DAP2 Dipeptidyl aminop 81.1 85 0.0018 34.1 17.0 61 53-117 55-117 (620)
433 PF11715 Nup160: Nucleoporin N 81.1 8.9 0.00019 40.9 9.6 34 59-92 216-253 (547)
434 PF00780 CNH: CNH domain; Int 80.7 52 0.0011 31.1 25.6 116 441-566 132-257 (275)
435 KOG2247 WD40 repeat-containing 79.8 0.24 5.1E-06 49.0 -2.5 138 455-601 42-182 (615)
436 COG5167 VID27 Protein involved 79.8 9 0.00019 38.6 8.0 49 70-119 574-622 (776)
437 PRK10115 protease 2; Provision 79.2 1.1E+02 0.0023 33.8 27.4 113 103-217 129-254 (686)
438 KOG4499 Ca2+-binding protein R 78.6 52 0.0011 29.9 16.1 135 59-199 110-264 (310)
439 TIGR03606 non_repeat_PQQ dehyd 78.6 50 0.0011 33.9 13.2 54 450-503 32-90 (454)
440 COG5276 Uncharacterized conser 78.4 61 0.0013 30.6 19.4 144 449-601 88-236 (370)
441 PHA03098 kelch-like protein; P 78.0 47 0.001 35.3 13.8 106 457-565 293-415 (534)
442 PF14727 PHTB1_N: PTHB1 N-term 77.9 84 0.0018 31.9 25.0 148 200-352 37-201 (418)
443 PF11715 Nup160: Nucleoporin N 77.6 10 0.00022 40.4 8.7 69 457-525 156-252 (547)
444 TIGR03606 non_repeat_PQQ dehyd 76.2 44 0.00096 34.2 12.1 105 18-122 31-167 (454)
445 PF14761 HPS3_N: Hermansky-Pud 75.7 61 0.0013 29.2 14.0 68 449-518 19-92 (215)
446 KOG1900 Nuclear pore complex, 75.1 96 0.0021 35.8 14.9 35 231-265 240-274 (1311)
447 PF08728 CRT10: CRT10; InterP 74.7 32 0.00068 37.2 10.9 104 502-606 113-245 (717)
448 KOG1520 Predicted alkaloid syn 74.6 30 0.00066 33.9 9.8 99 16-119 114-237 (376)
449 PF13449 Phytase-like: Esteras 73.5 96 0.0021 30.4 19.3 158 450-607 22-249 (326)
450 PF14781 BBS2_N: Ciliary BBSom 72.6 52 0.0011 27.0 12.5 106 499-608 6-135 (136)
451 TIGR03547 muta_rot_YjhT mutatr 72.2 1.1E+02 0.0023 30.3 13.9 43 513-555 168-210 (346)
452 PF12657 TFIIIC_delta: Transcr 72.2 40 0.00087 29.4 9.6 28 20-48 8-35 (173)
453 PF14655 RAB3GAP2_N: Rab3 GTPa 72.0 62 0.0013 32.8 11.8 39 486-524 302-340 (415)
454 cd00216 PQQ_DH Dehydrogenases 71.5 1.4E+02 0.003 31.4 30.0 56 36-92 70-133 (488)
455 PRK13684 Ycf48-like protein; P 70.9 1.1E+02 0.0024 30.1 30.2 149 448-605 173-329 (334)
456 TIGR03548 mutarot_permut cycli 70.8 60 0.0013 31.7 11.6 96 458-555 123-233 (323)
457 PF14781 BBS2_N: Ciliary BBSom 69.6 62 0.0013 26.6 10.9 66 194-264 4-82 (136)
458 PF12657 TFIIIC_delta: Transcr 69.5 32 0.00069 30.0 8.4 29 536-564 87-121 (173)
459 PF03088 Str_synth: Strictosid 68.5 31 0.00067 26.1 6.8 42 509-552 33-74 (89)
460 COG5167 VID27 Protein involved 68.4 1.3E+02 0.0029 30.8 12.8 125 130-263 495-632 (776)
461 KOG4460 Nuclear pore complex, 66.8 50 0.0011 33.8 9.6 96 447-567 103-201 (741)
462 PF01436 NHL: NHL repeat; Int 64.3 16 0.00035 20.5 3.6 25 450-474 4-28 (28)
463 PF02333 Phytase: Phytase; In 63.8 1.6E+02 0.0035 29.4 23.2 76 448-523 208-292 (381)
464 COG1506 DAP2 Dipeptidyl aminop 63.0 2.3E+02 0.005 30.8 16.9 92 60-159 15-114 (620)
465 PRK13615 lipoprotein LpqB; Pro 62.7 2.1E+02 0.0046 30.4 20.5 139 21-163 338-487 (557)
466 KOG2247 WD40 repeat-containing 60.0 2.1 4.6E-05 42.6 -0.9 105 146-257 75-182 (615)
467 PF13449 Phytase-like: Esteras 59.6 1.8E+02 0.0039 28.5 16.2 59 147-207 86-165 (326)
468 TIGR02171 Fb_sc_TIGR02171 Fibr 58.7 52 0.0011 36.4 8.8 85 30-114 320-412 (912)
469 KOG1900 Nuclear pore complex, 57.6 1.1E+02 0.0024 35.3 11.1 137 467-608 97-273 (1311)
470 PF10433 MMS1_N: Mono-function 56.4 2.6E+02 0.0057 29.4 14.9 148 455-606 218-387 (504)
471 PF03088 Str_synth: Strictosid 55.6 62 0.0013 24.5 6.4 43 465-510 33-75 (89)
472 PF10433 MMS1_N: Mono-function 54.4 2.8E+02 0.0061 29.1 40.1 79 421-501 418-503 (504)
473 KOG3616 Selective LIM binding 54.0 39 0.00085 36.0 6.7 79 4-85 1-81 (1636)
474 TIGR03547 muta_rot_YjhT mutatr 53.5 2.3E+02 0.005 27.9 13.9 54 501-555 62-128 (346)
475 PHA02790 Kelch-like protein; P 51.8 3E+02 0.0066 28.7 16.0 52 38-89 288-341 (480)
476 PLN02153 epithiospecifier prot 51.6 2.5E+02 0.0054 27.7 14.7 26 501-526 136-172 (341)
477 PF10214 Rrn6: RNA polymerase 51.4 3.2E+02 0.007 30.6 14.0 118 447-565 145-277 (765)
478 KOG1898 Splicing factor 3b, su 49.6 4.5E+02 0.0097 30.0 31.0 108 453-564 939-1048(1205)
479 PLN02193 nitrile-specifier pro 49.5 3.3E+02 0.0071 28.4 14.8 138 458-598 228-387 (470)
480 PF12768 Rax2: Cortical protei 49.3 2.2E+02 0.0048 27.2 10.5 74 169-243 17-98 (281)
481 COG4246 Uncharacterized protei 49.2 1.3E+02 0.0028 27.9 8.3 146 101-249 74-255 (340)
482 COG4257 Vgb Streptogramin lyas 47.6 2.5E+02 0.0054 26.5 18.5 206 7-263 54-262 (353)
483 PF14727 PHTB1_N: PTHB1 N-term 47.0 3.3E+02 0.0072 27.8 30.0 144 68-216 36-202 (418)
484 TIGR02608 delta_60_rpt delta-6 47.0 48 0.0011 22.4 4.2 19 59-77 2-20 (55)
485 PRK13613 lipoprotein LpqB; Pro 46.7 4.1E+02 0.0088 28.7 21.5 188 20-212 366-576 (599)
486 PRK13614 lipoprotein LpqB; Pro 46.6 4E+02 0.0086 28.5 19.5 139 20-163 346-503 (573)
487 PRK13614 lipoprotein LpqB; Pro 46.5 4E+02 0.0086 28.5 24.2 146 55-207 339-504 (573)
488 PRK14131 N-acetylneuraminic ac 45.2 3.3E+02 0.0072 27.3 12.8 55 501-555 83-149 (376)
489 TIGR03075 PQQ_enz_alc_DH PQQ-d 43.4 4.3E+02 0.0093 28.0 33.3 61 201-263 70-138 (527)
490 KOG3616 Selective LIM binding 42.2 57 0.0012 34.8 5.8 67 492-562 15-81 (1636)
491 PLN02153 epithiospecifier prot 41.8 3.5E+02 0.0076 26.6 14.5 64 502-565 85-168 (341)
492 PF12768 Rax2: Cortical protei 41.3 3.3E+02 0.0071 26.0 12.4 80 38-119 17-108 (281)
493 PF12341 DUF3639: Protein of u 39.9 70 0.0015 18.0 3.5 25 449-475 3-27 (27)
494 TIGR02276 beta_rpt_yvtn 40-res 39.5 88 0.0019 19.0 5.6 29 155-183 1-29 (42)
495 PF01731 Arylesterase: Arylest 38.2 62 0.0013 24.3 4.0 29 61-89 57-86 (86)
496 PF05096 Glu_cyclase_2: Glutam 37.6 3.5E+02 0.0077 25.4 19.5 155 102-263 46-203 (264)
497 PF11725 AvrE: Pathogenicity f 37.5 8.4E+02 0.018 29.7 18.7 134 464-601 618-766 (1774)
498 TIGR02171 Fb_sc_TIGR02171 Fibr 37.1 2.1E+02 0.0047 32.0 9.3 77 470-548 330-412 (912)
499 PF10584 Proteasome_A_N: Prote 36.9 13 0.00027 19.9 0.2 8 64-71 7-14 (23)
500 PF07250 Glyoxal_oxid_N: Glyox 36.3 1.5E+02 0.0032 27.6 7.0 60 195-254 73-138 (243)
No 1
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4e-96 Score=682.78 Aligned_cols=597 Identities=51% Similarity=0.854 Sum_probs=543.3
Q ss_pred CCcceeecCCCccCcCceeEEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcE
Q 007283 2 PQLAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTV 81 (609)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i 81 (609)
-+|.++|+|+|.++||+++.|..+|+|+.|+|++|+.+++-++.++....+|.+|...++..+|||.|.|||||+..|+|
T Consensus 4 ~~lk~~~~~lPst~Rg~~~~ig~dpkgd~ilY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~v 83 (603)
T KOG0318|consen 4 YELKETFASLPSTERGVPIIIGGDPKGDNILYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKV 83 (603)
T ss_pred hhhhhhccCCCcccCCcceEeccCCCCCeEEEeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcE
Confidence 38999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred EEEcCCC-CceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeE
Q 007283 82 RIWGAHN-DHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFR 160 (609)
Q Consensus 82 ~vWd~~~-~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 160 (609)
||||... ...++.+++...++|..++|++|+++++++|+|+++ +.++++||++..++++.||+..|.+++|.|..+++
T Consensus 84 RIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrer-fg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfR 162 (603)
T KOG0318|consen 84 RIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRER-FGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFR 162 (603)
T ss_pred EEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccc-eeEEEEecCCCccceeeccceeEeeeeccCCCceE
Confidence 9999876 447888999999999999999999999999999987 89999999999999999999999999999999999
Q ss_pred EEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEE
Q 007283 161 IATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVS 240 (609)
Q Consensus 161 i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~ 240 (609)
++||+.|..+.+|+.+|+|....++.|...|+|+.|+|||+++++++.||++.+||.++++.+..+....+|++.|.+++
T Consensus 163 i~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfals 242 (603)
T KOG0318|consen 163 IATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALS 242 (603)
T ss_pred EEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999988876679999999999
Q ss_pred ECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceee
Q 007283 241 WSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQL 320 (609)
Q Consensus 241 ~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~ 320 (609)
|+||+..++++|.|.+++|||+.. .++.+++.+... ++++.++|+|+++.+++.+.+|++..++..+.. .+..+
T Consensus 243 WsPDs~~~~T~SaDkt~KIWdVs~---~slv~t~~~~~~--v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~-~~~~i 316 (603)
T KOG0318|consen 243 WSPDSTQFLTVSADKTIKIWDVST---NSLVSTWPMGST--VEDQQVGCLWQKDHLITVSLSGTINYLNPSDPS-VLKVI 316 (603)
T ss_pred ECCCCceEEEecCCceEEEEEeec---cceEEEeecCCc--hhceEEEEEEeCCeEEEEEcCcEEEEecccCCC-hhhee
Confidence 999999999999999999999984 577787766543 778899999999999999999999999988766 77889
Q ss_pred eCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceec-cccccceeEeeeeC-CcEEEEeccceEEEEeccCCc
Q 007283 321 SGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQ-RKENSQIKCFAAIE-EEIVTSGFDNKIWRVSLQGDQ 398 (609)
Q Consensus 321 ~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~ 398 (609)
.||.+.|+++..++. +..|++|+.||.|.-|+...+...+.. ..|..+|.+++..+ +++.+.++|.++++.++..+.
T Consensus 317 ~GHnK~ITaLtv~~d-~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~ 395 (603)
T KOG0318|consen 317 SGHNKSITALTVSPD-GKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNG 395 (603)
T ss_pred cccccceeEEEEcCC-CCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCc
Confidence 999999999998754 489999999999999999887766554 34778899988866 889999999999999886665
Q ss_pred cccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecC
Q 007283 399 CGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRG 478 (609)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~ 478 (609)
..-...++++.++..++... ++...+....+++.++++......+...+...++|++|++..+|+|++|+.|++|.+.+
T Consensus 396 ~t~~~~~~lg~QP~~lav~~-d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g 474 (603)
T KOG0318|consen 396 YTKSEVVKLGSQPKGLAVLS-DGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSG 474 (603)
T ss_pred ccccceeecCCCceeEEEcC-CCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecC
Confidence 33222246666666443322 23477788889999998887778888889999999999999999999999999999998
Q ss_pred CeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeE
Q 007283 479 DTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCV 558 (609)
Q Consensus 479 ~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v 558 (609)
+.+..+.++..|.++|++|+||||+.+||+++..+.+.+||+.+++.....+..|++.|+|++|||+++++||||.|..|
T Consensus 475 ~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~V 554 (603)
T KOG0318|consen 475 DELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNV 554 (603)
T ss_pred CcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceE
Confidence 88777778899999999999999999999999999999999999888777788899999999999999999999999999
Q ss_pred EEEEcCCCCCcceeEeccccCCeEEEEEcCCCeEEEEeCCCcEEEEEccC
Q 007283 559 IIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRLTP 608 (609)
Q Consensus 559 ~vw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~D~~i~~W~~~~ 608 (609)
.||+++++. ..+.++.+|..+|+.|+|.|++.++|+|+|.+||+|++.+
T Consensus 555 iiysv~kP~-~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v~~ 603 (603)
T KOG0318|consen 555 IIYSVKKPA-KHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNVTL 603 (603)
T ss_pred EEEEccChh-hheEeccccccCceeEEEecCceEEeccCcceeEEecccC
Confidence 999999876 4588899999999999999999999999999999999863
No 2
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.6e-53 Score=412.04 Aligned_cols=566 Identities=17% Similarity=0.232 Sum_probs=439.7
Q ss_pred EeecCCCCeEEEeCCCEEEEEeCCCCccc-ccc-ccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeec
Q 007283 22 ISGHPKSNSILYTNGRSVIILDLSNPLQV-SIY-GEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVL 99 (609)
Q Consensus 22 ~~~~~~~~~l~~~~~~~~~i~~~~~~~~~-~~~-~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~ 99 (609)
+.++++|+.|+++.++.|++-|++++... ... ..-.+.+++++++||+++|++++..+-+++|+++++++.+.....|
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~H 104 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIH 104 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhcc
Confidence 88999999999999999999999998873 222 2334679999999999999999999999999999987655444459
Q ss_pred ccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCC-eEEEEecCCCeEEEEeCCCC
Q 007283 100 SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRP-FRIATCGEDFLVNFYEGPPF 178 (609)
Q Consensus 100 ~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~~i~t~~~d~~i~~~~~~~~ 178 (609)
.+||..++|+|.| .|++.|+- +..+++|+...+.+.+.|+||.+.|.++.|+|+-. ..+++|+.|+++++||....
T Consensus 105 e~Pvi~ma~~~~g-~LlAtgga--D~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~ 181 (775)
T KOG0319|consen 105 EAPVITMAFDPTG-TLLATGGA--DGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDK 181 (775)
T ss_pred CCCeEEEEEcCCC-ceEEeccc--cceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccC
Confidence 9999999999999 55555432 23578888889999999999999999999999743 35899999999999998744
Q ss_pred -ceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCC-----CCeEEEEe
Q 007283 179 -KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD-----GKQVLTAS 252 (609)
Q Consensus 179 -~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd-----~~~l~s~s 252 (609)
.+...+..|...|++++|++|+..+++++.|..+.|||....+...++.. ...+.++.+-++ +.+++++|
T Consensus 182 ~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~----ye~~E~vv~l~~~~~~~~~~~~TaG 257 (775)
T KOG0319|consen 182 RTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPL----YESLESVVRLREELGGKGEYIITAG 257 (775)
T ss_pred chHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheech----hhheeeEEEechhcCCcceEEEEec
Confidence 35677889999999999999999999999999999999988777766643 245667777776 67999999
Q ss_pred CCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEE
Q 007283 253 ADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTV 332 (609)
Q Consensus 253 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~ 332 (609)
.+|.+++||.... +............++. .........+++++.+.++.+|+.++. ....++-|....|..+.|
T Consensus 258 ~~g~~~~~d~es~---~~~~~~~~~~~~e~~~--~~~~~~~~~~l~vtaeQnl~l~d~~~l-~i~k~ivG~ndEI~Dm~~ 331 (775)
T KOG0319|consen 258 GSGVVQYWDSESG---KCVYKQRQSDSEEIDH--LLAIESMSQLLLVTAEQNLFLYDEDEL-TIVKQIVGYNDEILDMKF 331 (775)
T ss_pred CCceEEEEecccc---hhhhhhccCCchhhhc--ceeccccCceEEEEccceEEEEEcccc-EEehhhcCCchhheeeee
Confidence 9999999998642 2211111000111111 112234567788889999999975543 234567788899999999
Q ss_pred ecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeee--eCCcEEEEeccceEEEEeccCCcc---cccccccc
Q 007283 333 LNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAA--IEEEIVTSGFDNKIWRVSLQGDQC---GYANSIDI 407 (609)
Q Consensus 333 ~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~---~~~~~~~~ 407 (609)
..+....++-++..+.+|+++..+.... ....|+..+..+.. .+..+++++.|+++..|.+..+.+ .+.....+
T Consensus 332 lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH 410 (775)
T KOG0319|consen 332 LGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGH 410 (775)
T ss_pred cCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccc
Confidence 9777789999999999999966544333 33345555655552 344789999999999998844432 12222234
Q ss_pred CCCCceeEeeccCCcEEEEEe-cccEEEeeCCe-----eeEEe-------ccCCceeEEEEcCCCCEEEEEeCCCcEEEE
Q 007283 408 GSQPKDLSVALHYPELVLVST-DSGVVLLRGAE-----VVSTI-------NLRFPVTASAIAPDGSEAIIGSQDGKLRVY 474 (609)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~-------~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw 474 (609)
......+++...+..+++..+ +..+.+|.-.. ....+ .|...+++++++|+..++|+||+|.+.+||
T Consensus 411 ~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW 490 (775)
T KOG0319|consen 411 TNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIW 490 (775)
T ss_pred ccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeee
Confidence 445555666555556665554 44566663111 01111 245679999999999999999999999999
Q ss_pred EecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeC
Q 007283 475 SIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSL 554 (609)
Q Consensus 475 ~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~ 554 (609)
+++. +....++.+|+..|+||.|+|+.+.+|++|.|++|+||.+.+... ++.+.+|...|..+.|-.+|++|+|++.
T Consensus 491 ~le~--~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSC-lkT~eGH~~aVlra~F~~~~~qliS~~a 567 (775)
T KOG0319|consen 491 DLEQ--LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSC-LKTFEGHTSAVLRASFIRNGKQLISAGA 567 (775)
T ss_pred cccC--ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecccee-eeeecCccceeEeeeeeeCCcEEEeccC
Confidence 9984 444689999999999999999999999999999999999877654 6778999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEc
Q 007283 555 DTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRL 606 (609)
Q Consensus 555 D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~ 606 (609)
||.||+|++.+. .....+.+|..+||+++-+ ...+++|||.|+.|.+|.=
T Consensus 568 dGliKlWnikt~--eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 568 DGLIKLWNIKTN--ECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred CCcEEEEeccch--hhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeec
Confidence 999999999763 3345668999999999998 6678999999999999964
No 3
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.8e-50 Score=391.28 Aligned_cols=533 Identities=18% Similarity=0.308 Sum_probs=415.7
Q ss_pred CCCccCcCceeEEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCC
Q 007283 10 CVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHND 89 (609)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~ 89 (609)
|++..+|.. ++.+++||+.+++|.|+.+.++|+.+++.....-.++.+|.++++||+|.+|++.+..|.+.+-.....
T Consensus 10 llGTvyr~G--nl~ft~dG~sviSPvGNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r 87 (893)
T KOG0291|consen 10 LLGTVYRAG--NLVFTKDGNSVISPVGNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERGRALLVSLLSR 87 (893)
T ss_pred cccceeecC--cEEECCCCCEEEeccCCEEEEEEccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCCcEEEEecccc
Confidence 778888776 899999999999999999999999998887766778999999999999999999999999988877654
Q ss_pred ceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCe----------eEEEecCCccEEEEEEeeCCCe
Q 007283 90 HVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTN----------VGEFDGHSRRVLSCAFKPSRPF 159 (609)
Q Consensus 90 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~h~~~v~~~~~~p~~~~ 159 (609)
-++ +.+ ..+.+|.++.|||||++++++.. + + +.+|..+.. -..+.+|.+.|.++.|+.|..
T Consensus 88 ~Vl-h~f-~fk~~v~~i~fSPng~~fav~~g-n---~--lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr- 158 (893)
T KOG0291|consen 88 SVL-HRF-NFKRGVGAIKFSPNGKFFAVGCG-N---L--LQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR- 158 (893)
T ss_pred eee-EEE-eecCccceEEECCCCcEEEEEec-c---e--eEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc-
Confidence 332 222 24678999999999988776543 2 3 344543321 235679999999999998887
Q ss_pred EEEEecCCCeEEEEeCCCCce--eeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCC------------------
Q 007283 160 RIATCGEDFLVNFYEGPPFKF--KLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKT------------------ 219 (609)
Q Consensus 160 ~i~t~~~d~~i~~~~~~~~~~--~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~------------------ 219 (609)
.|++|+.|...++|.....+- ...+.||+.+|-..-|..+...+.+.+.||.+.+|....
T Consensus 159 ~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~ 238 (893)
T KOG0291|consen 159 LLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDE 238 (893)
T ss_pred eEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccc
Confidence 499999999999998876665 566899999999999999999999999999999996440
Q ss_pred -----Ccc-ccccC-------cCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceE
Q 007283 220 -----ADK-IGELS-------PEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDML 286 (609)
Q Consensus 220 -----~~~-~~~~~-------~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (609)
++. ..... -.......|++.+|+|.-.+|+++-..|...++++.. -.+++.+.... ..+
T Consensus 239 ~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~---f~lih~LSis~-----~~I 310 (893)
T KOG0291|consen 239 EMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD---FNLIHSLSISD-----QKI 310 (893)
T ss_pred cccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCC---ceEEEEeeccc-----cee
Confidence 010 00000 0011236799999999999999999999999999863 44555554321 223
Q ss_pred EEEEEc--CCeEEEEEcC-CcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceec
Q 007283 287 VGCLWQ--NDFLVIVSLG-GTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQ 363 (609)
Q Consensus 287 ~~~~~~--~~~~~~~~~~-g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~ 363 (609)
....++ ++.++.++.. |.+.+|.++.. ......+||...+.++++++ ++++++||+.||.|++|+...+.+....
T Consensus 311 ~t~~~N~tGDWiA~g~~klgQLlVweWqsE-sYVlKQQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTF 388 (893)
T KOG0291|consen 311 LTVSFNSTGDWIAFGCSKLGQLLVWEWQSE-SYVLKQQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTF 388 (893)
T ss_pred eEEEecccCCEEEEcCCccceEEEEEeecc-ceeeeccccccceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEe
Confidence 444555 7888877654 78999987643 23345689999999999974 6689999999999999998887766666
Q ss_pred cccccceeEeee--eCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeee
Q 007283 364 RKENSQIKCFAA--IEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVV 441 (609)
Q Consensus 364 ~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (609)
..|++.+..+.+ .+..+++++-|++++.|++..-.+ .
T Consensus 389 teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN-----------------------------------------f 427 (893)
T KOG0291|consen 389 TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN-----------------------------------------F 427 (893)
T ss_pred ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce-----------------------------------------e
Confidence 667777665555 567799999999999998765321 1
Q ss_pred EEecc--CCceeEEEEcCCCCEEEEEeCCC-cEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEE
Q 007283 442 STINL--RFPVTASAIAPDGSEAIIGSQDG-KLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVW 518 (609)
Q Consensus 442 ~~~~~--~~~~~~~~~sp~g~~l~~gs~dg-~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iw 518 (609)
+.+.. +-...|+++.|.|..+.+|++|. .|++|+++++++. -++.||+++|.+++|+|++..|||+|+|++||+|
T Consensus 428 RTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqll--DiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW 505 (893)
T KOG0291|consen 428 RTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLL--DILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIW 505 (893)
T ss_pred eeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeee--ehhcCCCCcceeeEEccccCeEEeccccceEEEE
Confidence 11111 12367899999999999999997 8999999999874 5789999999999999999999999999999999
Q ss_pred EccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCC-----ccee----------E---eccccCC
Q 007283 519 DRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPAS-----SRMT----------I---KGAHLGG 580 (609)
Q Consensus 519 d~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~-----~~~~----------~---~~~h~~~ 580 (609)
|+....... +...+...++.++|+|||+.||++..||.|.+||+..... .+.. + ..+....
T Consensus 506 ~if~s~~~v-Etl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~ 584 (893)
T KOG0291|consen 506 DIFSSSGTV-ETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKT 584 (893)
T ss_pred EeeccCcee-eeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCc
Confidence 987653333 3456888999999999999999999999999999753210 0000 0 1122356
Q ss_pred eEEEEEc-CCCeEEEEeCCCcEEEEEcc
Q 007283 581 VYGLAFT-DEHSVVSSGEDACVRVWRLT 607 (609)
Q Consensus 581 v~~~~~s-~~~~l~s~s~D~~i~~W~~~ 607 (609)
.+++.+| |+.+|++||..++|+++++.
T Consensus 585 Ftti~ySaDG~~IlAgG~sn~iCiY~v~ 612 (893)
T KOG0291|consen 585 FTTICYSADGKCILAGGESNSICIYDVP 612 (893)
T ss_pred eEEEEEcCCCCEEEecCCcccEEEEECc
Confidence 8899999 99999999999999999985
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-51 Score=370.95 Aligned_cols=367 Identities=25% Similarity=0.411 Sum_probs=284.1
Q ss_pred CeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 007283 136 TNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIY 215 (609)
Q Consensus 136 ~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iw 215 (609)
.+...+.||...|.+++|+|++. ++++|+.|.++++||..+....++.++|...|.|++|+|||+.||+|+.||.|++|
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW 184 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence 34567899999999999999887 69999999999999999988889999999999999999999999999999999999
Q ss_pred eCCCCccccccCcCCCCccceEEEEECC-----CCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEE
Q 007283 216 DGKTADKIGELSPEDGHKGSVYAVSWSP-----DGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL 290 (609)
Q Consensus 216 d~~~~~~~~~~~~~~~h~~~V~~l~~sp-----d~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (609)
|+++++.+..- ..+|+..|++++|.| ..++|+++|.||.++|||+.. ++.
T Consensus 185 dpktg~~~g~~--l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~---~~~-------------------- 239 (480)
T KOG0271|consen 185 DPKTGQQIGRA--LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL---GTC-------------------- 239 (480)
T ss_pred cCCCCCccccc--ccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC---ceE--------------------
Confidence 99999887643 469999999999987 567999999999999999752 111
Q ss_pred EcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccce
Q 007283 291 WQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQI 370 (609)
Q Consensus 291 ~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~ 370 (609)
...+.||+..|+|+.+- ...+++++|.|++|++|+...+........|...+
T Consensus 240 --------------------------~~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwv 291 (480)
T KOG0271|consen 240 --------------------------VRTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWV 291 (480)
T ss_pred --------------------------EEEeccCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchhe
Confidence 12356899999999984 34799999999999999876654333333344445
Q ss_pred eEeeeeCCc-EEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCc
Q 007283 371 KCFAAIEEE-IVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFP 449 (609)
Q Consensus 371 ~~~~~~~~~-~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (609)
..++...+. +.++.+|-.-.... .. .+.... . ..
T Consensus 292 N~lalsTdy~LRtgaf~~t~~~~~-------------------~~-----------------------se~~~~-A--l~ 326 (480)
T KOG0271|consen 292 NHLALSTDYVLRTGAFDHTGRKPK-------------------SF-----------------------SEEQKK-A--LE 326 (480)
T ss_pred eeeeccchhhhhccccccccccCC-------------------Ch-----------------------HHHHHH-H--HH
Confidence 444443222 22222221100000 00 000000 0 00
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEee
Q 007283 450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKN 529 (609)
Q Consensus 450 ~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~ 529 (609)
-...+.--.++.+++|+.|.++.+|+-.... .....+.+|...|+.+.||||++++||||.|+.|++||-.+++. +..
T Consensus 327 rY~~~~~~~~erlVSgsDd~tlflW~p~~~k-kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~-las 404 (480)
T KOG0271|consen 327 RYEAVLKDSGERLVSGSDDFTLFLWNPFKSK-KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF-LAS 404 (480)
T ss_pred HHHHhhccCcceeEEecCCceEEEecccccc-cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcch-hhh
Confidence 0001112245789999999999999753222 12345789999999999999999999999999999999877765 445
Q ss_pred ecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEE
Q 007283 530 MLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWR 605 (609)
Q Consensus 530 ~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~ 605 (609)
+.+|-+.|..++||.|.++|++||.|.++++|++.+.+ +..=+.||.+-|+++.|+ |+..++|||.|+.+++|.
T Consensus 405 fRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK--l~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 405 FRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK--LKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred hhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee--ecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 77899999999999999999999999999999998643 223356899999999999 889999999999999995
No 5
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.3e-47 Score=370.76 Aligned_cols=524 Identities=16% Similarity=0.206 Sum_probs=399.4
Q ss_pred eEEeecCCCCeEEEe-CCCEEEEEeCCCCcccccccc-CCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEe
Q 007283 20 ILISGHPKSNSILYT-NGRSVIILDLSNPLQVSIYGE-HAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFR 97 (609)
Q Consensus 20 ~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~ 97 (609)
.+++..||++.|++. .+..+.+|++.+++..+.... |++||..++|+|.|.+||+|+.|+.++|||+..+. +.+.|+
T Consensus 66 ta~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~-~th~fk 144 (775)
T KOG0319|consen 66 TALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGY-CTHSFK 144 (775)
T ss_pred heeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCE-EEEEec
Confidence 388999999988876 468899999999998888887 99999999999999999999999999999998865 456799
Q ss_pred ecccceeEEEECCCCCE-EEEEECCCCcceEEEEEcCCC-CeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeC
Q 007283 98 VLSGRIDDLQWSPDGLR-IVACGDGKGKSLVRAFMWDSG-TNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEG 175 (609)
Q Consensus 98 ~~~~~v~~~~~spdg~~-l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~ 175 (609)
+|.+.|.++.|+|+-.+ ++..|+. +..+++|+.... .++..+..|...|++++|.+++. .++++|+|.++.+||.
T Consensus 145 G~gGvVssl~F~~~~~~~lL~sg~~--D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~-~~ls~~RDkvi~vwd~ 221 (775)
T KOG0319|consen 145 GHGGVVSSLLFHPHWNRWLLASGAT--DGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSL-ELLSVGRDKVIIVWDL 221 (775)
T ss_pred CCCceEEEEEeCCccchhheeecCC--CceEEEEEcccCchHHHHHHhhhhheeeeeeccCCc-eEEEeccCcEEEEeeh
Confidence 99999999999998544 5555543 346778887743 45788899999999999999976 5899999999999998
Q ss_pred CCCceeeeccCcccceEEEEEcCC-----CCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEE
Q 007283 176 PPFKFKLSHRGHSNFVNCVRFSPD-----GSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLT 250 (609)
Q Consensus 176 ~~~~~~~~~~~h~~~v~~l~~s~d-----g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s 250 (609)
...+...... -...+.++.+.++ |.++.|++.+|.+++||.+++++........ ...+..+...+....++.
T Consensus 222 ~~~~~l~~lp-~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~--~~e~~~~~~~~~~~~~l~ 298 (775)
T KOG0319|consen 222 VQYKKLKTLP-LYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD--SEEIDHLLAIESMSQLLL 298 (775)
T ss_pred hhhhhhheec-hhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCC--chhhhcceeccccCceEE
Confidence 6554443332 2345777778777 6799999999999999999998876654322 233666666666666777
Q ss_pred EeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEc--CCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeE
Q 007283 251 ASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQ--NDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVT 328 (609)
Q Consensus 251 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~ 328 (609)
...|..+.++|.++ .++.+.+- +..+++.-.+.+. .++++++++.+.+++|+..+. ....+.||+..|.
T Consensus 299 vtaeQnl~l~d~~~---l~i~k~iv----G~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~--~c~ii~GH~e~vl 369 (775)
T KOG0319|consen 299 VTAEQNLFLYDEDE---LTIVKQIV----GYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTS--YCQIIPGHTEAVL 369 (775)
T ss_pred EEccceEEEEEccc---cEEehhhc----CCchhheeeeecCCccceEEEEeCCCceEEEecCCC--ceEEEeCchhhee
Confidence 77899999998753 33333221 1112222223333 368999999999999976543 2347899999999
Q ss_pred EEEEecCCCCEEEEEecCCcEEEEecCccccce----eccccccceeEeeee---CCcEEEEeccceEEEEeccCCccc-
Q 007283 329 ALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGK----LQRKENSQIKCFAAI---EEEIVTSGFDNKIWRVSLQGDQCG- 400 (609)
Q Consensus 329 ~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~d~~i~~~~~~~~~~~- 400 (609)
+++... ++.+++|||.|+++++|..+.+.... ....|+..+.+++.. ...+++++.|..+..|.+...+..
T Consensus 370 SL~~~~-~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~ 448 (775)
T KOG0319|consen 370 SLDVWS-SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETA 448 (775)
T ss_pred eeeecc-cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccc
Confidence 998543 34799999999999999875432211 112355666666663 456899999999999998873321
Q ss_pred c-------ccccccCCCCceeEeeccCCcEEEEEe-cccEEEee--CCeeeEEec-cCCceeEEEEcCCCCEEEEEeCCC
Q 007283 401 Y-------ANSIDIGSQPKDLSVALHYPELVLVST-DSGVVLLR--GAEVVSTIN-LRFPVTASAIAPDGSEAIIGSQDG 469 (609)
Q Consensus 401 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~-~~~~~~~~~~sp~g~~l~~gs~dg 469 (609)
+ .....+..+...+.+++++ .+++.++ +....+|. ...+...+. |+-.+.++.|+|+.+.+|++|.|+
T Consensus 449 ~~~~~~~~~t~~aHdKdIN~Vaia~nd-kLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~ 527 (775)
T KOG0319|consen 449 FPIVLTCRYTERAHDKDINCVAIAPND-KLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDK 527 (775)
T ss_pred ccceehhhHHHHhhcccccceEecCCC-ceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCc
Confidence 0 0111234455556666554 3444433 45566664 233333443 667799999999999999999999
Q ss_pred cEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEE
Q 007283 470 KLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMV 549 (609)
Q Consensus 470 ~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l 549 (609)
+|+||.+++..+ .++++||...|..+.|-.+|+.|+|++.||-+++|++.+.+. ...+..|++.|++++.+|+..++
T Consensus 528 TvKIW~is~fSC--lkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC-~~tlD~H~DrvWaL~~~~~~~~~ 604 (775)
T KOG0319|consen 528 TVKIWSISTFSC--LKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNEC-EMTLDAHNDRVWALSVSPLLDMF 604 (775)
T ss_pred eEEEEEecccee--eeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhh-hhhhhhccceeEEEeecCcccee
Confidence 999999986654 688999999999999999999999999999999999988765 34578999999999999999999
Q ss_pred EEEeCCCeEEEEEcC
Q 007283 550 ATGSLDTCVIIYEID 564 (609)
Q Consensus 550 ~s~s~D~~v~vw~~~ 564 (609)
+||+.||.|.+|.-.
T Consensus 605 ~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 605 VTGGGDGRIIFWKDV 619 (775)
T ss_pred EecCCCeEEEEeecC
Confidence 999999999999743
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.5e-50 Score=358.48 Aligned_cols=367 Identities=21% Similarity=0.328 Sum_probs=290.6
Q ss_pred ccCcCceeEEeecCCCCeEEEeCC-CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCce
Q 007283 13 STERGRGILISGHPKSNSILYTNG-RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHV 91 (609)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~ 91 (609)
..|.+..+.+.|+|+|..|++..| .++++||+.+..+..+..+|+.-|.|+++||||+.||||+.||+|++||..+++.
T Consensus 112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~ 191 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ 191 (480)
T ss_pred CCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc
Confidence 456788889999999999999876 7999999999999999999999999999999999999999999999999999887
Q ss_pred eeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEE
Q 007283 92 LKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVN 171 (609)
Q Consensus 92 ~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~ 171 (609)
..+.+++|...|.+++|.|-- ..|... ++|+++.|+.++
T Consensus 192 ~g~~l~gH~K~It~Lawep~h----------------------------------------l~p~~r-~las~skDg~vr 230 (480)
T KOG0271|consen 192 IGRALRGHKKWITALAWEPLH----------------------------------------LVPPCR-RLASSSKDGSVR 230 (480)
T ss_pred ccccccCcccceeEEeecccc----------------------------------------cCCCcc-ceecccCCCCEE
Confidence 777888888888888887732 012233 599999999999
Q ss_pred EEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEE
Q 007283 172 FYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTA 251 (609)
Q Consensus 172 ~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~ 251 (609)
+||...+++.+.+.||..+|+|+.|--+| +|.+|+.|++|++|+...|.....+ +||...|+.++++.|- .|=+|
T Consensus 231 IWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~l---kGHahwvN~lalsTdy-~LRtg 305 (480)
T KOG0271|consen 231 IWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCREL---KGHAHWVNHLALSTDY-VLRTG 305 (480)
T ss_pred EEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhh---cccchheeeeeccchh-hhhcc
Confidence 99999999999999999999999997766 7999999999999999999888777 4899999999998652 34444
Q ss_pred eCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEE
Q 007283 252 SADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALT 331 (609)
Q Consensus 252 s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~ 331 (609)
..|.+=+-.. ..........+. | ...+. . .
T Consensus 306 af~~t~~~~~-----------~~se~~~~Al~r-----------------------Y--------~~~~~-~--~----- 335 (480)
T KOG0271|consen 306 AFDHTGRKPK-----------SFSEEQKKALER-----------------------Y--------EAVLK-D--S----- 335 (480)
T ss_pred ccccccccCC-----------ChHHHHHHHHHH-----------------------H--------HHhhc-c--C-----
Confidence 4443211110 000000000000 0 00000 0 0
Q ss_pred EecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCC
Q 007283 332 VLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQP 411 (609)
Q Consensus 332 ~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~ 411 (609)
. ..+++|++|.++.+|+..... .++.
T Consensus 336 ---~--erlVSgsDd~tlflW~p~~~k---------kpi~---------------------------------------- 361 (480)
T KOG0271|consen 336 ---G--ERLVSGSDDFTLFLWNPFKSK---------KPIT---------------------------------------- 361 (480)
T ss_pred ---c--ceeEEecCCceEEEecccccc---------cchh----------------------------------------
Confidence 0 468899999999999542110 0000
Q ss_pred ceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCC
Q 007283 412 KDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHR 491 (609)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~ 491 (609)
+-..+...|+.+.||||++++|++|.|..|++|+.+++++ ...+.+|.
T Consensus 362 ------------------------------rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~--lasfRGHv 409 (480)
T KOG0271|consen 362 ------------------------------RMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF--LASFRGHV 409 (480)
T ss_pred ------------------------------hhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcch--hhhhhhcc
Confidence 0001223478889999999999999999999999998876 46788999
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEE
Q 007283 492 GAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYE 562 (609)
Q Consensus 492 ~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~ 562 (609)
++|..++||.|.++++|||.|.++++||+.+.+.. ..+.+|.++|.+++|||||+.+++|+.|+.+++|.
T Consensus 410 ~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~-~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 410 AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLK-QDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ceeEEEEeccCccEEEEcCCCceEEEEEeeeeeec-ccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999999999999999999999876653 35778999999999999999999999999999994
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=7.5e-45 Score=340.01 Aligned_cols=523 Identities=19% Similarity=0.251 Sum_probs=383.4
Q ss_pred eeEEeecCCCCeEEEeC-CCEEEEEeCCCCc--cccccccCCCCcEEEEECCCCCEEEEEeCC----CcEEEEcCCCCce
Q 007283 19 GILISGHPKSNSILYTN-GRSVIILDLSNPL--QVSIYGEHAYPATVARFSPNGEWIASADVS----GTVRIWGAHNDHV 91 (609)
Q Consensus 19 ~~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~--~~~~~~~h~~~v~~~~~sp~g~~las~~~d----~~i~vWd~~~~~~ 91 (609)
.+.+.++|.|-++++.. .+.++|||..+.. ....+..-.++|..++|++|++.|+..+.. |.+-+||.-+.
T Consensus 62 vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~S-- 139 (603)
T KOG0318|consen 62 VTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNS-- 139 (603)
T ss_pred eEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCc--
Confidence 34566999999888874 5799999986632 223455567899999999999999865543 35777876543
Q ss_pred eeEEEeecccceeEEEECCCC-CEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeE
Q 007283 92 LKKEFRVLSGRIDDLQWSPDG-LRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLV 170 (609)
Q Consensus 92 ~~~~~~~~~~~v~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i 170 (609)
. -++.+|+..|.++.|-|.. -++++++|+.. +.++.-..-+--.++..|...|.++.|+|||. +|++.|.|+++
T Consensus 140 v-Gei~GhSr~ins~~~KpsRPfRi~T~sdDn~---v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~-~Fat~gsDgki 214 (603)
T KOG0318|consen 140 V-GEITGHSRRINSVDFKPSRPFRIATGSDDNT---VAFFEGPPFKFKSSFREHSKFVNCVRYSPDGS-RFATAGSDGKI 214 (603)
T ss_pred c-ceeeccceeEeeeeccCCCceEEEeccCCCe---EEEeeCCCeeeeecccccccceeeEEECCCCC-eEEEecCCccE
Confidence 2 3688999999999999976 47888887653 33443222233345678999999999999998 59999999999
Q ss_pred EEEeCCCCceeeecc---CcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCe
Q 007283 171 NFYEGPPFKFKLSHR---GHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQ 247 (609)
Q Consensus 171 ~~~~~~~~~~~~~~~---~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 247 (609)
.+||..+++....+. +|.+.|.+++|+||+.+++|++.|.+++|||+.+.+++.++.....-...-..+-|. +..
T Consensus 215 ~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~ 292 (603)
T KOG0318|consen 215 YIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDH 292 (603)
T ss_pred EEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCe
Confidence 999999999888876 899999999999999999999999999999999999888775322112333445554 567
Q ss_pred EEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCe
Q 007283 248 VLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNV 327 (609)
Q Consensus 248 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v 327 (609)
|++.+.+|+|.+++..... ..+.+.. +...+. ..+...+++++++++.||.|.-|+..........-.+|...|
T Consensus 293 lItVSl~G~in~ln~~d~~---~~~~i~G-HnK~IT--aLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI 366 (603)
T KOG0318|consen 293 LITVSLSGTINYLNPSDPS---VLKVISG-HNKSIT--ALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQI 366 (603)
T ss_pred EEEEEcCcEEEEecccCCC---hhheecc-ccccee--EEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceE
Confidence 9999999999999987432 2222221 111111 122334567999999999999999766554444457899999
Q ss_pred EEEEEecCCCCEEEEEecCCcEEEEecCccccce-eccccccceeEeeeeCC-cEEEEeccceEEEEeccCCcccccccc
Q 007283 328 TALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGK-LQRKENSQIKCFAAIEE-EIVTSGFDNKIWRVSLQGDQCGYANSI 405 (609)
Q Consensus 328 ~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~ 405 (609)
.+++.... ..++|++.|.++++-....+.... ...+...+...++..++ .++...++..+.++.-++.. ..+
T Consensus 367 ~~~~~~~~--~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~----~~~ 440 (603)
T KOG0318|consen 367 KGMAASES--GELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKV----SSI 440 (603)
T ss_pred EEEeecCC--CcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcc----eee
Confidence 99997643 578999999999998764332211 11122334445655433 46666666666665432221 122
Q ss_pred ccCCCCceeEeeccCCcEEEEEecccEEEee--CCe---eeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCe
Q 007283 406 DIGSQPKDLSVALHYPELVLVSTDSGVVLLR--GAE---VVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDT 480 (609)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~ 480 (609)
.++.+...+++.+...+..+.+-+..+.++. +.+ ......++.+++++++|||+.+||+|...+.+.+|++.++.
T Consensus 441 ~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~ 520 (603)
T KOG0318|consen 441 PIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASRE 520 (603)
T ss_pred ccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCc
Confidence 3444556666666654444444444455543 322 22345678899999999999999999999999999998776
Q ss_pred eeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEE
Q 007283 481 LTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVII 560 (609)
Q Consensus 481 ~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~v 560 (609)
. ......-|++.|+||+|||+..++|+||.|..|+||++......++....|...|+.+.|- |...|++.+.|-.||+
T Consensus 521 ~-~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~ 598 (603)
T KOG0318|consen 521 V-KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL-DESTVVSSGQDANIKV 598 (603)
T ss_pred e-ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEe-cCceEEeccCcceeEE
Confidence 5 2334556999999999999999999999999999999988766566667899999999997 6677899999999999
Q ss_pred EEcC
Q 007283 561 YEID 564 (609)
Q Consensus 561 w~~~ 564 (609)
|++.
T Consensus 599 W~v~ 602 (603)
T KOG0318|consen 599 WNVT 602 (603)
T ss_pred eccc
Confidence 9874
No 8
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1.8e-45 Score=342.14 Aligned_cols=529 Identities=18% Similarity=0.284 Sum_probs=373.0
Q ss_pred CcCcee--EEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCC--------cEEEE
Q 007283 15 ERGRGI--LISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSG--------TVRIW 84 (609)
Q Consensus 15 ~~~~~~--~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~--------~i~vW 84 (609)
+||+.+ ++...|.|+ ++|+....+++|+.+...| +.+.||.+.|.|++++||.-++|+|...| .+|+|
T Consensus 62 YRG~dcR~Nly~lptgE-~vyfvA~V~Vl~n~ee~~Q-r~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriW 139 (626)
T KOG2106|consen 62 YRGVDCRNNLYLLPTGE-LVYFVAAVGVLYNWEERSQ-RHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIW 139 (626)
T ss_pred ecceeeeceeEEccCcc-EEEEeccEEEEEeehhhhc-ccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeec
Confidence 478776 888999876 7777788999999966555 56899999999999999999999988766 49999
Q ss_pred cCCCCceeeEEEeecccceeEEEECC-CCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEE
Q 007283 85 GAHNDHVLKKEFRVLSGRIDDLQWSP-DGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIAT 163 (609)
Q Consensus 85 d~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t 163 (609)
|..+-..+ ..+-.....|.+++||+ ++-.+++.-|....+++.+|+|..+..+...+.....|..+.|+|.++..+++
T Consensus 140 dsv~L~TL-~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit 218 (626)
T KOG2106|consen 140 DSVTLSTL-HVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIIT 218 (626)
T ss_pred ccccceee-eeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEE
Confidence 97764433 23445667899999999 44444444555567799999999988888888888889999999999999999
Q ss_pred ecCCCeEEEEeCCCCceee---eccCc-ccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEE
Q 007283 164 CGEDFLVNFYEGPPFKFKL---SHRGH-SNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAV 239 (609)
Q Consensus 164 ~~~d~~i~~~~~~~~~~~~---~~~~h-~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l 239 (609)
+|..+ +.+|+.+...+.. .+.++ +..|.|++|.++|+ .+||..+|.|.||+..+.+...+. ..|.+.|.++
T Consensus 219 ~Gk~H-~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~---~aH~ggv~~L 293 (626)
T KOG2106|consen 219 CGKGH-LYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQV---HAHDGGVFSL 293 (626)
T ss_pred eCCce-EEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEe---eecCCceEEE
Confidence 99876 6677766543332 23332 36799999999997 689999999999998665543333 2799999999
Q ss_pred EECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCcee
Q 007283 240 SWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQ 319 (609)
Q Consensus 240 ~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~ 319 (609)
+.-.+|.+| +|+.|+.|..||-. ..++..+..+...+.+ -...-+..-+++++..+.|..=.++ ......
T Consensus 294 ~~lr~Gtll-SGgKDRki~~Wd~~---y~k~r~~elPe~~G~i----Rtv~e~~~di~vGTtrN~iL~Gt~~--~~f~~~ 363 (626)
T KOG2106|consen 294 CMLRDGTLL-SGGKDRKIILWDDN---YRKLRETELPEQFGPI----RTVAEGKGDILVGTTRNFILQGTLE--NGFTLT 363 (626)
T ss_pred EEecCccEe-ecCccceEEecccc---ccccccccCchhcCCe----eEEecCCCcEEEeeccceEEEeeec--CCceEE
Confidence 999999765 59999999999922 2222222222222211 1122222225556555554332222 233456
Q ss_pred eeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeC-CcEEEEeccceEEEEeccCCc
Q 007283 320 LSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIE-EEIVTSGFDNKIWRVSLQGDQ 398 (609)
Q Consensus 320 ~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~ 398 (609)
..+|......++.++.. .+++|++.|+.+++|+ +... ........+..|..+.. +.++.+...+.-
T Consensus 364 v~gh~delwgla~hps~-~q~~T~gqdk~v~lW~-~~k~--~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w--------- 430 (626)
T KOG2106|consen 364 VQGHGDELWGLATHPSK-NQLLTCGQDKHVRLWN-DHKL--EWTKIIEDPAECADFHPSGVVAVGTATGRW--------- 430 (626)
T ss_pred EEecccceeeEEcCCCh-hheeeccCcceEEEcc-CCce--eEEEEecCceeEeeccCcceEEEeeccceE---------
Confidence 68899999999988644 6899999999999996 2111 00111112223333321 112222222222
Q ss_pred cccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecC
Q 007283 399 CGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRG 478 (609)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~ 478 (609)
++...+ ...++..-....+++++.++|+|.++|.|+.|+.|+||.+..
T Consensus 431 -------------------------~V~d~e-------~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 431 -------------------------FVLDTE-------TQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA 478 (626)
T ss_pred -------------------------EEEecc-------cceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence 221111 112222222256899999999999999999999999999976
Q ss_pred CeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCce--EEe---------------eecCCCCceEEEE
Q 007283 479 DTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREV--KLK---------------NMLYHTARINCLA 541 (609)
Q Consensus 479 ~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~--~~~---------------~~~~h~~~i~~l~ 541 (609)
+.......-+.|..+|+.++||+|++++.+-+-|..+..|....-.. ..+ ....|...|..++
T Consensus 479 ~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~ 558 (626)
T KOG2106|consen 479 NGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVA 558 (626)
T ss_pred CCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhh
Confidence 55433444444558999999999999999999999999995322110 001 0123667789999
Q ss_pred ECCCCcEEEEEeCCCeEEEEEcCCCCC-cceeEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEc
Q 007283 542 WSPNNSMVATGSLDTCVIIYEIDKPAS-SRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRL 606 (609)
Q Consensus 542 ~s~d~~~l~s~s~D~~v~vw~~~~~~~-~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~ 606 (609)
-|.+.+++|+|...|+|++|..+.... ....-..+|++.|++|+|+ .++++++.+.|.+|..|++
T Consensus 559 rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 559 RSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred hhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 999999999999999999999874221 1233457899999999999 8899999999999999987
No 9
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-44 Score=351.17 Aligned_cols=566 Identities=16% Similarity=0.194 Sum_probs=410.8
Q ss_pred cCCCCeEEEeCCCEEEEEeCCCCcccccc--ccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccc
Q 007283 25 HPKSNSILYTNGRSVIILDLSNPLQVSIY--GEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGR 102 (609)
Q Consensus 25 ~~~~~~l~~~~~~~~~i~~~~~~~~~~~~--~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~ 102 (609)
+.+|+.++.++.+.+.+||+.++.....+ ..-+..|+|++-+|+.-+||.|-+||.||||+..++.. ...+.+|...
T Consensus 31 ~~~Gr~va~~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~-~~tfngHK~A 109 (888)
T KOG0306|consen 31 SGKGRAVAVSALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEI-LITFNGHKAA 109 (888)
T ss_pred cCCCcEEEEeccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCce-eeeecccccc
Confidence 34589898889999999999988443332 23456899999999999999999999999999987643 3468899999
Q ss_pred eeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceee
Q 007283 103 IDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKL 182 (609)
Q Consensus 103 v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~ 182 (609)
|+.+.|+..|.+|++.+-+.+ +-+|+.-....+..+.||.+.|+..-|..+.. .+++++.|..|++||.++..+..
T Consensus 110 Vt~l~fd~~G~rlaSGskDt~---IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~-~lvS~sKDs~iK~WdL~tqhCf~ 185 (888)
T KOG0306|consen 110 VTTLKFDKIGTRLASGSKDTD---IIVWDLVGEEGLFRLRGHKDSITQALFLNGDS-FLVSVSKDSMIKFWDLETQHCFE 185 (888)
T ss_pred eEEEEEcccCceEeecCCCcc---EEEEEeccceeeEEeecchHHHhHHhccCCCe-EEEEeccCceEEEEecccceeee
Confidence 999999999999999765432 33444434556778899999999999987655 58999999999999999999999
Q ss_pred eccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc----cc--ccC----cCCCCccceEEEEECCCCCeEEEEe
Q 007283 183 SHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK----IG--ELS----PEDGHKGSVYAVSWSPDGKQVLTAS 252 (609)
Q Consensus 183 ~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~----~~--~~~----~~~~h~~~V~~l~~spd~~~l~s~s 252 (609)
++..|+..+..+++.+ +.+++++.|+.+.+|+...... .. ... ......+....+.-.+++++++.-+
T Consensus 186 Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g 263 (888)
T KOG0306|consen 186 THVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQG 263 (888)
T ss_pred EEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEec
Confidence 9999999999999988 6889999999999998621110 00 000 0112234556667778889999999
Q ss_pred CCCcEEEeecccCC------CCc---eEE-EeccCCCCC-----------c-----cceEEEEEE--c--CCeEEEEEcC
Q 007283 253 ADKSAKVWDISEDN------HGK---LKK-TLTPSGSGG-----------V-----DDMLVGCLW--Q--NDFLVIVSLG 302 (609)
Q Consensus 253 ~d~~i~iwd~~~~~------~~~---~~~-~~~~~~~~~-----------~-----~~~~~~~~~--~--~~~~~~~~~~ 302 (609)
.|..+.++.+.... ..+ .++ ..+...... + ...+..+.| . ....++.-.+
T Consensus 264 ~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~n 343 (888)
T KOG0306|consen 264 ADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLAN 343 (888)
T ss_pred chhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeec
Confidence 99999988764210 000 000 000000000 0 001111222 1 1122233566
Q ss_pred CcEEEEeCCCCCCC--------ceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecccccccee--E
Q 007283 303 GTISIFSANDLEKS--------PLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIK--C 372 (609)
Q Consensus 303 g~i~~~~~~~~~~~--------~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~--~ 372 (609)
+++.+|.++-.... ...+.||...|.++++++. +.++..+..+.+++|+..+......... ..+. +
T Consensus 344 Ntv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d--~~~~~Sga~~SikiWn~~t~kciRTi~~--~y~l~~~ 419 (888)
T KOG0306|consen 344 NTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSD--SILLASGAGESIKIWNRDTLKCIRTITC--GYILASK 419 (888)
T ss_pred CceEEEEeccCCCCCccccccceeeeccchhheeEEEeecC--ceeeeecCCCcEEEEEccCcceeEEecc--ccEEEEE
Confidence 77777776542111 1457899999999999854 4555555678999998875543322211 1222 3
Q ss_pred eeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeC-------Cee-----
Q 007283 373 FAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRG-------AEV----- 440 (609)
Q Consensus 373 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~----- 440 (609)
|.+-+..++++...+++-++++......... -.+......+++.++....+..+.+..+.+|.. +..
T Consensus 420 Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti-~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~ls 498 (888)
T KOG0306|consen 420 FVPGDRYIVLGTKNGELQVFDLASASLVETI-RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLS 498 (888)
T ss_pred ecCCCceEEEeccCCceEEEEeehhhhhhhh-hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeee
Confidence 3334566888888888888887654421111 133344566667777777777777777777741 110
Q ss_pred ---eEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEE
Q 007283 441 ---VSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIV 517 (609)
Q Consensus 441 ---~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~i 517 (609)
.+.+.....+.|+.+||||+++|++--|.++++|-+++-.+ ...+-||.-||.|++.|||+..+++||.|++|++
T Consensus 499 l~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF--flsLYGHkLPV~smDIS~DSklivTgSADKnVKi 576 (888)
T KOG0306|consen 499 LKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF--FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKI 576 (888)
T ss_pred eccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceee--eeeecccccceeEEeccCCcCeEEeccCCCceEE
Confidence 12334456799999999999999999999999999976554 4567899999999999999999999999999999
Q ss_pred EEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEe
Q 007283 518 WDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSG 596 (609)
Q Consensus 518 wd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s 596 (609)
|-+.-+.. .+-+.+|++.|.++.|-|+..+++|++.|+.|+-||-.. -.....+.+|..-|||++.+ ++.+++|+|
T Consensus 577 WGLdFGDC-HKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k--Fe~iq~L~~H~~ev~cLav~~~G~~vvs~s 653 (888)
T KOG0306|consen 577 WGLDFGDC-HKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK--FEEIQKLDGHHSEVWCLAVSPNGSFVVSSS 653 (888)
T ss_pred eccccchh-hhhhhcccCceeEEEEcccceeEEEecCcceEEeechhh--hhhheeeccchheeeeeEEcCCCCeEEecc
Confidence 98766654 455789999999999999999999999999999998653 23456678899999999998 788999999
Q ss_pred CCCcEEEEEcc
Q 007283 597 EDACVRVWRLT 607 (609)
Q Consensus 597 ~D~~i~~W~~~ 607 (609)
.|++|++|.-+
T Consensus 654 hD~sIRlwE~t 664 (888)
T KOG0306|consen 654 HDKSIRLWERT 664 (888)
T ss_pred CCceeEeeecc
Confidence 99999999764
No 10
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-40 Score=324.06 Aligned_cols=445 Identities=19% Similarity=0.274 Sum_probs=343.6
Q ss_pred EEeecCCCCeEEEeCCCEEEEEeCCCCcc--------ccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCcee
Q 007283 21 LISGHPKSNSILYTNGRSVIILDLSNPLQ--------VSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVL 92 (609)
Q Consensus 21 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~--------~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~ 92 (609)
+|.++|+|..++.+.|+.+.||...+... .+.+.||-+.|+++.|+.|.++|++|+.|-++|||++...+-+
T Consensus 101 ~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~ 180 (893)
T KOG0291|consen 101 AIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNL 180 (893)
T ss_pred eEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEecccccc
Confidence 78999999999999999999999765433 3457799999999999999999999999999999999865532
Q ss_pred -eEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCC-----------------------CCe-----e-----
Q 007283 93 -KKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDS-----------------------GTN-----V----- 138 (609)
Q Consensus 93 -~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~-----------------------~~~-----~----- 138 (609)
...+.+|...|.++.|..|...|.+++.+. .+.+|..+. +.. .
T Consensus 181 ~~~~l~gHkd~VvacfF~~~~~~l~tvskdG---~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~ 257 (893)
T KOG0291|consen 181 FTYALNGHKDYVVACFFGANSLDLYTVSKDG---ALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTK 257 (893)
T ss_pred ceEeccCCCcceEEEEeccCcceEEEEecCc---eEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEE
Confidence 356789999999999999999999987433 233444330 000 0
Q ss_pred -EEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCC-CcEEEEe
Q 007283 139 -GEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSD-KKGIIYD 216 (609)
Q Consensus 139 -~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d-~~i~iwd 216 (609)
.-++..+..|++++|||... .+|+|-..+...+|+.+.+.++..+.--...|..+.|+..|.+||.|+.. |.+.+|+
T Consensus 258 k~~ln~~~~kvtaa~fH~~t~-~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVwe 336 (893)
T KOG0291|consen 258 KHYLNQNSSKVTAAAFHKGTN-LLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWE 336 (893)
T ss_pred eeeecccccceeeeeccCCce-EEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEE
Confidence 11223347899999999875 59999999999999999999988877667789999999999999998865 7899999
Q ss_pred CCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeE
Q 007283 217 GKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFL 296 (609)
Q Consensus 217 ~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (609)
+++..-+... ++|...+++++++|||+++++|+.||+|++||.. .+-+
T Consensus 337 WqsEsYVlKQ---QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~---SgfC-------------------------- 384 (893)
T KOG0291|consen 337 WQSESYVLKQ---QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ---SGFC-------------------------- 384 (893)
T ss_pred eeccceeeec---cccccceeeEEECCCCcEEEeccCCCcEEEEecc---CceE--------------------------
Confidence 9887755443 5899999999999999999999999999999975 1211
Q ss_pred EEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccc-eeccccccceeEeee
Q 007283 297 VIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGG-KLQRKENSQIKCFAA 375 (609)
Q Consensus 297 ~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~-~~~~~~~~~~~~~~~ 375 (609)
..++..|+..|+.+.|... ++.+++.|.||+||.||+....+- .+......+..|++.
T Consensus 385 --------------------~vTFteHts~Vt~v~f~~~-g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscvav 443 (893)
T KOG0291|consen 385 --------------------FVTFTEHTSGVTAVQFTAR-GNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAV 443 (893)
T ss_pred --------------------EEEeccCCCceEEEEEEec-CCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEE
Confidence 1345569999999999853 478999999999999998765432 233334455677776
Q ss_pred e-CCcEEEEeccc--eEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEec-cCCcee
Q 007283 376 I-EEEIVTSGFDN--KIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTIN-LRFPVT 451 (609)
Q Consensus 376 ~-~~~~~~~~~d~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 451 (609)
+ .++++.++... .|++|+++++. ++..+. |..||.
T Consensus 444 D~sGelV~AG~~d~F~IfvWS~qTGq-----------------------------------------llDiLsGHEgPVs 482 (893)
T KOG0291|consen 444 DPSGELVCAGAQDSFEIFVWSVQTGQ-----------------------------------------LLDILSGHEGPVS 482 (893)
T ss_pred cCCCCEEEeeccceEEEEEEEeecCe-----------------------------------------eeehhcCCCCcce
Confidence 4 34455444333 47777766543 122222 457899
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEE----
Q 007283 452 ASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKL---- 527 (609)
Q Consensus 452 ~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~---- 527 (609)
+++|+|+|..||+||.|.+||+|++-..... ..++ .+...+..++|+|||+-+|++..||.|.+||.....+..
T Consensus 483 ~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~-vEtl-~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idg 560 (893)
T KOG0291|consen 483 GLSFSPDGSLLASGSWDKTVRIWDIFSSSGT-VETL-EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDG 560 (893)
T ss_pred eeEEccccCeEEeccccceEEEEEeeccCce-eeeE-eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccc
Confidence 9999999999999999999999998543211 1222 366789999999999999999999999999976533220
Q ss_pred -e--------------eecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCC
Q 007283 528 -K--------------NMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDK 565 (609)
Q Consensus 528 -~--------------~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~ 565 (609)
+ .-......++.++||+||+.+.+|+..+.|++|+++.
T Consensus 561 rkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 561 RKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPE 613 (893)
T ss_pred hhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECch
Confidence 0 0011235689999999999999999999999999865
No 11
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.7e-43 Score=320.40 Aligned_cols=201 Identities=27% Similarity=0.438 Sum_probs=185.1
Q ss_pred cCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCC--CCEEEEEECCCCcceEEEEEc
Q 007283 55 EHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPD--GLRIVACGDGKGKSLVRAFMW 132 (609)
Q Consensus 55 ~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spd--g~~l~~~~~~~~~~~~~~~~~ 132 (609)
|-..+|..+.||+|++.||||+.+|+++||..++.. +...|.+|...|.++.|+|. +..|++++.+. .+++|..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~-~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dg---tvklw~~ 248 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN-LLQTLRGHTSRVGAAVFHPVDSDLNLATASADG---TVKLWKL 248 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc-eeEEEeccccceeeEEEccCCCccceeeeccCC---ceeeecc
Confidence 557799999999999999999999999999998763 55679999999999999997 56888887544 4678888
Q ss_pred CCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcE
Q 007283 133 DSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKG 212 (609)
Q Consensus 133 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i 212 (609)
+....++.+.+|..+|..++|||+|.+ ++|++.|.+.++||..+........||...|.+++|.|||.+++||+-|..-
T Consensus 249 ~~e~~l~~l~gH~~RVs~VafHPsG~~-L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~ 327 (459)
T KOG0272|consen 249 SQETPLQDLEGHLARVSRVAFHPSGKF-LGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLG 327 (459)
T ss_pred CCCcchhhhhcchhhheeeeecCCCce-eeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchh
Confidence 888899999999999999999999996 9999999999999999988887889999999999999999999999999999
Q ss_pred EEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283 213 IIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS 263 (609)
Q Consensus 213 ~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~ 263 (609)
+|||.+++.++..+ .+|..+|.+++|+|+|..|||||.|++++|||++
T Consensus 328 RvWDlRtgr~im~L---~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR 375 (459)
T KOG0272|consen 328 RVWDLRTGRCIMFL---AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLR 375 (459)
T ss_pred heeecccCcEEEEe---cccccceeeEeECCCceEEeecCCCCcEEEeeec
Confidence 99999999999877 4899999999999999999999999999999986
No 12
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.3e-42 Score=316.92 Aligned_cols=283 Identities=27% Similarity=0.427 Sum_probs=244.9
Q ss_pred ecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCC--CCEEEEEeCCCcEEEEeCCC
Q 007283 142 DGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPD--GSKFISVSSDKKGIIYDGKT 219 (609)
Q Consensus 142 ~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~d--g~~l~s~~~d~~i~iwd~~~ 219 (609)
.+.+.+|..+.|++++. .||||+.+|.+++|..+......++.||...|.++.|+|. +..+|||+.||++++|+..+
T Consensus 172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 36678999999999997 4999999999999999999999999999999999999998 55899999999999999988
Q ss_pred CccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEE
Q 007283 220 ADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIV 299 (609)
Q Consensus 220 ~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (609)
...+..+ .+|...|..++|+|+|++|+|+|.|.+-|+||+..+.
T Consensus 251 e~~l~~l---~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~--------------------------------- 294 (459)
T KOG0272|consen 251 ETPLQDL---EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKS--------------------------------- 294 (459)
T ss_pred Ccchhhh---hcchhhheeeeecCCCceeeecccccchhhcccccch---------------------------------
Confidence 8777776 4899999999999999999999999999999986310
Q ss_pred EcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCc
Q 007283 300 SLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEE 379 (609)
Q Consensus 300 ~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (609)
......||...
T Consensus 295 ----------------ElL~QEGHs~~----------------------------------------------------- 305 (459)
T KOG0272|consen 295 ----------------ELLLQEGHSKG----------------------------------------------------- 305 (459)
T ss_pred ----------------hhHhhcccccc-----------------------------------------------------
Confidence 01122345433
Q ss_pred EEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCC
Q 007283 380 IVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDG 459 (609)
Q Consensus 380 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g 459 (609)
|.+++|.|||
T Consensus 306 ----------------------------------------------------------------------v~~iaf~~DG 315 (459)
T KOG0272|consen 306 ----------------------------------------------------------------------VFSIAFQPDG 315 (459)
T ss_pred ----------------------------------------------------------------------cceeEecCCC
Confidence 3445667788
Q ss_pred CEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEE
Q 007283 460 SEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINC 539 (609)
Q Consensus 460 ~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~ 539 (609)
..+++|+.|..-||||++++.. .-++.+|...|..|+|||+|..+|+||.|++++|||++.... +..+.+|+.-|+.
T Consensus 316 SL~~tGGlD~~~RvWDlRtgr~--im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~-ly~ipAH~nlVS~ 392 (459)
T KOG0272|consen 316 SLAATGGLDSLGRVWDLRTGRC--IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE-LYTIPAHSNLVSQ 392 (459)
T ss_pred ceeeccCccchhheeecccCcE--EEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc-ceecccccchhhh
Confidence 8888899999999999987765 457889999999999999999999999999999999877655 4457789999999
Q ss_pred EEECC-CCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEE
Q 007283 540 LAWSP-NNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWR 605 (609)
Q Consensus 540 l~~s~-d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~ 605 (609)
|+|+| .|++|+|++.|+++++|.-..- ..+..+.||.+.|.+++.+ |++.|+|+|.|+++|+|.
T Consensus 393 Vk~~p~~g~fL~TasyD~t~kiWs~~~~--~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 393 VKYSPQEGYFLVTASYDNTVKIWSTRTW--SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eEecccCCeEEEEcccCcceeeecCCCc--ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999 6899999999999999986542 4456677999999999999 889999999999999995
No 13
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=5.5e-40 Score=317.11 Aligned_cols=574 Identities=20% Similarity=0.283 Sum_probs=381.8
Q ss_pred eEEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCC---EEEEEeCCCcEEEEcCCCCc-eeeEE
Q 007283 20 ILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGE---WIASADVSGTVRIWGAHNDH-VLKKE 95 (609)
Q Consensus 20 ~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~---~las~~~d~~i~vWd~~~~~-~~~~~ 95 (609)
...+..|. ..++|..+..|.++|-.+......+.||...|+|+.+-|+.+ +++||+.|+.|++|.+.... .....
T Consensus 18 ~v~sw~~~-~~vafGa~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~ 96 (764)
T KOG1063|consen 18 KVSSWGPG-GLVAFGAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYT 96 (764)
T ss_pred cccccccc-ceEEecCCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEe
Confidence 34455554 468888999999999888777788999999999999999888 89999999999999998443 23344
Q ss_pred EeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCC-CCe---eEEEecCCcc--EEEEEEee-CCCeEEEEecCCC
Q 007283 96 FRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDS-GTN---VGEFDGHSRR--VLSCAFKP-SRPFRIATCGEDF 168 (609)
Q Consensus 96 ~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~h~~~--v~~~~~~p-~~~~~i~t~~~d~ 168 (609)
+.+|...+ ++++.-- .+.++. ....++ ..|+. +.. +..+.-.... -.++++.| .+.+++|.|+.+.
T Consensus 97 ~~g~~~~~--~cv~a~~-~~~~~~--~ad~~v--~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~ 169 (764)
T KOG1063|consen 97 IQGHCKEC--VCVVARS-SVMTCK--AADGTV--SVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKF 169 (764)
T ss_pred ecCcceeE--EEEEeee-eEEEee--ccCceE--EEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcce
Confidence 55544444 4444322 222221 112233 44544 222 1222211222 23566667 5556678888889
Q ss_pred eEEEEeCC--CCceeeeccCcccceEEEEEcCCCC---EEEEEeCCCcEEEEeCCCCcccc------------------c
Q 007283 169 LVNFYEGP--PFKFKLSHRGHSNFVNCVRFSPDGS---KFISVSSDKKGIIYDGKTADKIG------------------E 225 (609)
Q Consensus 169 ~i~~~~~~--~~~~~~~~~~h~~~v~~l~~s~dg~---~l~s~~~d~~i~iwd~~~~~~~~------------------~ 225 (609)
.+.++... .++....+.||.+.|.+++|...+. +||++|.|..|+||.+.-+.... .
T Consensus 170 ~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~ 249 (764)
T KOG1063|consen 170 VVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMI 249 (764)
T ss_pred EEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeee
Confidence 99998643 4566778999999999999987654 78999999999999643222000 0
Q ss_pred c----------CcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCC-
Q 007283 226 L----------SPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQND- 294 (609)
Q Consensus 226 ~----------~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 294 (609)
+ ....||...|+++.|+|.+..|+++|.|.++.+|...+ +.+.....+...+-++......++.|+++
T Consensus 250 l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~-~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~ 328 (764)
T KOG1063|consen 250 LEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDE-NTGIWVDVVRLGEVGGSAGGFWGGLWSPNS 328 (764)
T ss_pred eeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCC-ccceEEEEEEeecccccccceeeEEEcCCC
Confidence 0 01248999999999999999999999999999998754 34556666655544444445677888755
Q ss_pred -eEEEEEcCCcEEEEeCCCCC--CCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCcccc--ce--eccccc
Q 007283 295 -FLVIVSLGGTISIFSANDLE--KSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYG--GK--LQRKEN 367 (609)
Q Consensus 295 -~~~~~~~~g~i~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~--~~--~~~~~~ 367 (609)
.+++-+..|..++|...+.. .......||.+.|..+++.+ .+.++++.|.|.+-|++.....+. .. .+..|.
T Consensus 329 ~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHG 407 (764)
T KOG1063|consen 329 NVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHG 407 (764)
T ss_pred CEEEEecccCcEEEEeccCccceeeccccccccccceeeeecC-CCCEEEEeccccceeeecccccccceeeeccccccc
Confidence 57777889999999833322 22235689999999999975 457999999999999985541110 00 111244
Q ss_pred cceeEeeeeC-CcEEEEeccce-EEEEeccCCccccccccc---------cC--CCCceeEeeccCCcEEE-EEecccE-
Q 007283 368 SQIKCFAAIE-EEIVTSGFDNK-IWRVSLQGDQCGYANSID---------IG--SQPKDLSVALHYPELVL-VSTDSGV- 432 (609)
Q Consensus 368 ~~~~~~~~~~-~~~~~~~~d~~-i~~~~~~~~~~~~~~~~~---------~~--~~~~~~~~~~~~~~~~~-~~~~~~~- 432 (609)
..+.|+++.+ +....++.|++ +++++.+.....-...+. .. .....+.++ .+..+. .....+.
T Consensus 408 yDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLS--nKa~~~~e~~~G~~~ 485 (764)
T KOG1063|consen 408 YDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLS--NKAFFPGETNTGGEA 485 (764)
T ss_pred ccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccccccccc--CCCCccccccccccc
Confidence 5677888754 44444555555 566666554321000000 00 000111111 101110 0000000
Q ss_pred -------------EEee--------CC----eeeEEeccCCceeEEEEcCCCCEEEEEeCCC-----cEEEEEecCCeee
Q 007283 433 -------------VLLR--------GA----EVVSTINLRFPVTASAIAPDGSEAIIGSQDG-----KLRVYSIRGDTLT 482 (609)
Q Consensus 433 -------------~~~~--------~~----~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg-----~i~iw~~~~~~~~ 482 (609)
.+.. .+ +..+.+.|.+++.+++++|+|+++|++++.. .|++|+......
T Consensus 486 ~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~- 564 (764)
T KOG1063|consen 486 AVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ- 564 (764)
T ss_pred ceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh-
Confidence 0000 00 1112234678899999999999999998875 589999876543
Q ss_pred eeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCc---eEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEE
Q 007283 483 EEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSRE---VKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVI 559 (609)
Q Consensus 483 ~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~---~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~ 559 (609)
...+++|.-.|+.++|||||++|++.|.|+++.+|...... ......+.|+.-|+++.|+||++++||+|.|++|+
T Consensus 565 -~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~Vk 643 (764)
T KOG1063|consen 565 -VQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVK 643 (764)
T ss_pred -hheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEE
Confidence 34688999999999999999999999999999999865432 22334678999999999999999999999999999
Q ss_pred EEEcCCCCCcc-ee-EeccccCCeEEEEEcC-C----CeEEE-EeCCCcEEEEEcc
Q 007283 560 IYEIDKPASSR-MT-IKGAHLGGVYGLAFTD-E----HSVVS-SGEDACVRVWRLT 607 (609)
Q Consensus 560 vw~~~~~~~~~-~~-~~~~h~~~v~~~~~s~-~----~~l~s-~s~D~~i~~W~~~ 607 (609)
||..+...... .. -...++..|+++++.+ . ..+++ |=+-|.|.+|+.+
T Consensus 644 VW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 644 VWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred EEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 99986542111 11 2235888999999862 1 22555 5578999999864
No 14
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-39 Score=316.22 Aligned_cols=493 Identities=17% Similarity=0.234 Sum_probs=347.8
Q ss_pred EEeecCCCCeEEEe-CCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeec
Q 007283 21 LISGHPKSNSILYT-NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVL 99 (609)
Q Consensus 21 ~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~ 99 (609)
.+..+|+.-.|+-+ .++.|.||++........+.||+.-|+++.|+..|..||||+.|+.|.|||+.....+ ..+++|
T Consensus 70 ~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl-~rL~GH 148 (888)
T KOG0306|consen 70 CLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGL-FRLRGH 148 (888)
T ss_pred EeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceee-EEeecc
Confidence 45566776666644 4579999999988888889999999999999999999999999999999999875543 468999
Q ss_pred ccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCC--
Q 007283 100 SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP-- 177 (609)
Q Consensus 100 ~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~-- 177 (609)
+..|+.+-|..+...|++++-+ .++++|+.++..+..+...|...++.+++++ .++++++.|..+++|+...
T Consensus 149 kd~iT~~~F~~~~~~lvS~sKD---s~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~ 222 (888)
T KOG0306|consen 149 KDSITQALFLNGDSFLVSVSKD---SMIKFWDLETQHCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFED 222 (888)
T ss_pred hHHHhHHhccCCCeEEEEeccC---ceEEEEecccceeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeeccc
Confidence 9999999999988899988743 3789999999999999999999999999998 3688999999999997510
Q ss_pred --------Cce--eeec-cCcccceEEEEEcCCCCEEEEEeCCCcEE---------------------------------
Q 007283 178 --------FKF--KLSH-RGHSNFVNCVRFSPDGSKFISVSSDKKGI--------------------------------- 213 (609)
Q Consensus 178 --------~~~--~~~~-~~h~~~v~~l~~s~dg~~l~s~~~d~~i~--------------------------------- 213 (609)
... ...+ +.-++..-.+...+++++|+.-+.|..+.
T Consensus 223 D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~ 302 (888)
T KOG0306|consen 223 DEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDD 302 (888)
T ss_pred ccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccc
Confidence 000 0000 11111122233344444444444444443
Q ss_pred ---------------------------------------------EEeCCC-Ccc------ccccCcCCCCccceEEEEE
Q 007283 214 ---------------------------------------------IYDGKT-ADK------IGELSPEDGHKGSVYAVSW 241 (609)
Q Consensus 214 ---------------------------------------------iwd~~~-~~~------~~~~~~~~~h~~~V~~l~~ 241 (609)
.|.... ++. ...+ ...||...|.++++
T Consensus 303 v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i-~~~GHR~dVRsl~v 381 (888)
T KOG0306|consen 303 VEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNI-EIGGHRSDVRSLCV 381 (888)
T ss_pred hhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCcccccccee-eeccchhheeEEEe
Confidence 332221 000 0001 12379999999999
Q ss_pred CCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEE-EEEEcCCeEEEEEcCCcEEEEeCCCCCCCceee
Q 007283 242 SPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLV-GCLWQNDFLVIVSLGGTISIFSANDLEKSPLQL 320 (609)
Q Consensus 242 spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~ 320 (609)
|.|...++|++ .+.+++|+.. ..+.+.++... .... .+...+.+++++...|.+.+|++.... .....
T Consensus 382 S~d~~~~~Sga-~~SikiWn~~---t~kciRTi~~~------y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~-l~Eti 450 (888)
T KOG0306|consen 382 SSDSILLASGA-GESIKIWNRD---TLKCIRTITCG------YILASKFVPGDRYIVLGTKNGELQVFDLASAS-LVETI 450 (888)
T ss_pred ecCceeeeecC-CCcEEEEEcc---CcceeEEeccc------cEEEEEecCCCceEEEeccCCceEEEEeehhh-hhhhh
Confidence 99998888886 5689999986 46677776533 1222 223345688899999999999875432 22345
Q ss_pred eCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccc
Q 007283 321 SGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCG 400 (609)
Q Consensus 321 ~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~ 400 (609)
..|.+.++.++..+ ++.-++|||.|.+|++|+...... ..+ ...++ +.+.
T Consensus 451 ~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~--~~g--------------------t~~k~--lsl~----- 500 (888)
T KOG0306|consen 451 RAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVS--VPG--------------------TQKKV--LSLK----- 500 (888)
T ss_pred hccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEec--cCc--------------------cccee--eeec-----
Confidence 68999999999875 457899999999999997542111 000 00000 0000
Q ss_pred cccccccCCCCceeEeeccCCcEEEEEecccEEEe--eCCee-eEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEec
Q 007283 401 YANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLL--RGAEV-VSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIR 477 (609)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~ 477 (609)
..+.+++......+++++++.-+.+.-.++.+..+ ++... +....|+.||.|+.+|||.+.+++||.|.+|++|-++
T Consensus 501 ~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 501 HTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD 580 (888)
T ss_pred cceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccc
Confidence 01112222222233333333222222234443333 22222 2223477899999999999999999999999999887
Q ss_pred CCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCe
Q 007283 478 GDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTC 557 (609)
Q Consensus 478 ~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~ 557 (609)
-+.+ -+.+-+|...|.+|.|-|+...+.+++.|+.++-||-..-+. +..+.+|...|+|++.+|+|.+++++|.|.+
T Consensus 581 FGDC--HKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~-iq~L~~H~~ev~cLav~~~G~~vvs~shD~s 657 (888)
T KOG0306|consen 581 FGDC--HKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEE-IQKLDGHHSEVWCLAVSPNGSFVVSSSHDKS 657 (888)
T ss_pred cchh--hhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhh-heeeccchheeeeeEEcCCCCeEEeccCCce
Confidence 6654 345678999999999999999999999999999999655443 3457899999999999999999999999999
Q ss_pred EEEEEcCC
Q 007283 558 VIIYEIDK 565 (609)
Q Consensus 558 v~vw~~~~ 565 (609)
|++|....
T Consensus 658 IRlwE~td 665 (888)
T KOG0306|consen 658 IRLWERTD 665 (888)
T ss_pred eEeeeccC
Confidence 99998654
No 15
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=6.6e-38 Score=303.04 Aligned_cols=535 Identities=17% Similarity=0.228 Sum_probs=368.8
Q ss_pred EEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEe--CCCcEEEEcCCCCceeeEEEee
Q 007283 21 LISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASAD--VSGTVRIWGAHNDHVLKKEFRV 98 (609)
Q Consensus 21 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~--~d~~i~vWd~~~~~~~~~~~~~ 98 (609)
.++..|..-.++|++|..+++|+....+|.+....|+..++|+||||+|+|+|+|. ....+|||++.... ...+|..
T Consensus 42 gLa~~p~Sgl~aYpAGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~-vVAEfvd 120 (1080)
T KOG1408|consen 42 GLASVPCSGLCAYPAGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHG-VVAEFVD 120 (1080)
T ss_pred cccccccccceeeccCcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeecccc-chhhhhh
Confidence 57788888889999999999999988888888888999999999999999999987 45679999998765 3356788
Q ss_pred cccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCC
Q 007283 99 LSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF 178 (609)
Q Consensus 99 ~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~ 178 (609)
|.=.|++++|+|.+++++++|..-+. ++.+|+|..+..... +.-+..|..++|+.++.+ ++|.+.-+ +++|-.+-.
T Consensus 121 HKY~vtcvaFsp~~kyvvSVGsQHDM-IVnv~dWr~N~~~as-nkiss~Vsav~fsEdgSY-fvT~gnrH-vk~wyl~~~ 196 (1080)
T KOG1408|consen 121 HKYNVTCVAFSPGNKYVVSVGSQHDM-IVNVNDWRVNSSGAS-NKISSVVSAVAFSEDGSY-FVTSGNRH-VKLWYLQIQ 196 (1080)
T ss_pred ccccceeeeecCCCcEEEeeccccce-EEEhhhhhhcccccc-cccceeEEEEEEccCCce-eeeeeeee-EEEEEeecc
Confidence 88899999999999999999965443 678888886543221 223567889999999986 77776655 566632211
Q ss_pred c-ee------------------------------------eeccCcc-----------------cceEEEEEcCCCCEEE
Q 007283 179 K-FK------------------------------------LSHRGHS-----------------NFVNCVRFSPDGSKFI 204 (609)
Q Consensus 179 ~-~~------------------------------------~~~~~h~-----------------~~v~~l~~s~dg~~l~ 204 (609)
+ .. .+-.||. -..+|++.+ .++|+
T Consensus 197 ~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs--~r~I~ 274 (1080)
T KOG1408|consen 197 SKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS--SRLIA 274 (1080)
T ss_pred ccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeee--cceEE
Confidence 1 00 0011221 123455554 45899
Q ss_pred EEeCCCcEEEEeCCCCccccccCcC------------CCCc---------cceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283 205 SVSSDKKGIIYDGKTADKIGELSPE------------DGHK---------GSVYAVSWSPDGKQVLTASADKSAKVWDIS 263 (609)
Q Consensus 205 s~~~d~~i~iwd~~~~~~~~~~~~~------------~~h~---------~~V~~l~~spd~~~l~s~s~d~~i~iwd~~ 263 (609)
.|+.+|.|++++..+-+-+.++.-. ..|. -...++.|.|....|.+.-.|..+++||++
T Consensus 275 cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvr 354 (1080)
T KOG1408|consen 275 CGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVR 354 (1080)
T ss_pred EeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEecc
Confidence 9999999999987765544333210 0010 123577899988999999999999999997
Q ss_pred cCC-CCceEEEeccCC--------CCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCC--C-------------c--
Q 007283 264 EDN-HGKLKKTLTPSG--------SGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEK--S-------------P-- 317 (609)
Q Consensus 264 ~~~-~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~--~-------------~-- 317 (609)
.-+ .++....+.... +..+......|+ ...-+++.+.|++|++|++..... . +
T Consensus 355 D~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~acl-p~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~ 433 (1080)
T KOG1408|consen 355 DVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACL-PRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYE 433 (1080)
T ss_pred ccccccceeeeeeccceeeeeccccccccCcccccC-CccceeEecCCCcEEEeecccccccceeecccchhhhhcCccc
Confidence 532 122221111100 001111111122 123477889999999998653100 0 0
Q ss_pred ---e----------------eeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeee--
Q 007283 318 ---L----------------QLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAI-- 376 (609)
Q Consensus 318 ---~----------------~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~-- 376 (609)
. .+.+....+.++++++ +++.+++|..-|+++++++..-........|.+.|.|+...
T Consensus 434 d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p 512 (1080)
T KOG1408|consen 434 DSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSP-DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFP 512 (1080)
T ss_pred cCchhhhhhccCCcccccchhhcCcccceEEEEECC-CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCc
Confidence 0 0111223567777764 56899999999999999876544434334577788888764
Q ss_pred ---CCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEE-EEEecccEEEeeCCee---eEEe---c-
Q 007283 377 ---EEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELV-LVSTDSGVVLLRGAEV---VSTI---N- 445 (609)
Q Consensus 377 ---~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~---~- 445 (609)
...+++++.|.-|++++...+.--....-.+....+.+.++-.+.... +..+.+..+.++.++. ...+ .
T Consensus 513 ~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~ 592 (1080)
T KOG1408|consen 513 VLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQ 592 (1080)
T ss_pred hhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccccc
Confidence 344778888999999998766431111123344556666665543332 2333333333332211 0000 0
Q ss_pred --cCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeE-EEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccC
Q 007283 446 --LRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEA-VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVS 522 (609)
Q Consensus 446 --~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~-~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~ 522 (609)
.+..+..+++.|.-++++++++|+.||||+++++++.... --.+|.+..-.|...|.|.|+|+.+.|+++-++|+.+
T Consensus 593 t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~s 672 (1080)
T KOG1408|consen 593 TLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVS 672 (1080)
T ss_pred ccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEecc
Confidence 1245778999999999999999999999999988764321 1245778888999999999999999999999999988
Q ss_pred CceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCC
Q 007283 523 REVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDK 565 (609)
Q Consensus 523 ~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~ 565 (609)
++. +..+.+|..-|+.+.|++|.++|++.+.||.|.||.++.
T Consensus 673 gEc-vA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 673 GEC-VAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred chh-hhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 876 445789999999999999999999999999999999753
No 16
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.1e-38 Score=277.74 Aligned_cols=288 Identities=22% Similarity=0.362 Sum_probs=242.8
Q ss_pred cccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEE
Q 007283 51 SIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAF 130 (609)
Q Consensus 51 ~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~ 130 (609)
+++.||.+.|.++.|++|+++|+|+|.||.+.|||..+.... +.++.....|-.++|+|.|+.+++.|-++. -.++
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~-haipl~s~WVMtCA~sPSg~~VAcGGLdN~---Csiy 124 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV-HAIPLPSSWVMTCAYSPSGNFVACGGLDNK---CSIY 124 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce-eEEecCceeEEEEEECCCCCeEEecCcCce---eEEE
Confidence 578999999999999999999999999999999999875422 335556778999999999998888775442 3345
Q ss_pred EcCCC------CeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcC-CCCEE
Q 007283 131 MWDSG------TNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSP-DGSKF 203 (609)
Q Consensus 131 ~~~~~------~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l 203 (609)
..... +...++.+|+..+.+|.|-+|+. |+|++.|.+.-+||+++++....|.||...|.++.++| +++.+
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~--ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntF 202 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH--ILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTF 202 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCCCc--eEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeE
Confidence 55422 23456899999999999998664 99999999999999999999999999999999999999 89999
Q ss_pred EEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCcc
Q 007283 204 ISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVD 283 (609)
Q Consensus 204 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 283 (609)
++|+.|+..++||.+.+.+...+ .+|.+-|++++|.|+|.-+++||.|++.|+||++.++ .+
T Consensus 203 vSg~cD~~aklWD~R~~~c~qtF---~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~---~~------------ 264 (343)
T KOG0286|consen 203 VSGGCDKSAKLWDVRSGQCVQTF---EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQ---EL------------ 264 (343)
T ss_pred EecccccceeeeeccCcceeEee---cccccccceEEEccCCCeeeecCCCceeEEEeecCCc---EE------------
Confidence 99999999999999999988877 4899999999999999999999999999999987321 00
Q ss_pred ceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceec
Q 007283 284 DMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQ 363 (609)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~ 363 (609)
.+|. | .+
T Consensus 265 ----------------------a~ys-------------~------------~~-------------------------- 271 (343)
T KOG0286|consen 265 ----------------------AVYS-------------H------------DS-------------------------- 271 (343)
T ss_pred ----------------------eeec-------------c------------Cc--------------------------
Confidence 0000 0 00
Q ss_pred cccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEE
Q 007283 364 RKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVST 443 (609)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (609)
T Consensus 272 -------------------------------------------------------------------------------- 271 (343)
T KOG0286|consen 272 -------------------------------------------------------------------------------- 271 (343)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEE
Q 007283 444 INLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWD 519 (609)
Q Consensus 444 ~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd 519 (609)
..+++++++||-.|++|.+|-.|.++.+||.-.+.. ..++.+|.+.|+||..+|||..+++||+|.++|||.
T Consensus 272 --~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~--vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 272 --IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGER--VGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred --ccCCceeEEEcccccEEEeeecCCceeEeeccccce--EEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 003478889999999999999999999999765543 457889999999999999999999999999999994
No 17
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.5e-38 Score=274.65 Aligned_cols=293 Identities=21% Similarity=0.337 Sum_probs=241.1
Q ss_pred eeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEe
Q 007283 181 KLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVW 260 (609)
Q Consensus 181 ~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iw 260 (609)
.+.++||...|.++.|++|++.|++++.||.++|||..+..+.+.+. -....|..++|+|.|+++|+|+.|+...||
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haip---l~s~WVMtCA~sPSg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIP---LPSSWVMTCAYSPSGNFVACGGLDNKCSIY 124 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEe---cCceeEEEEEECCCCCeEEecCcCceeEEE
Confidence 46789999999999999999999999999999999998887766553 246789999999999999999999999999
Q ss_pred ecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEE
Q 007283 261 DISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVI 340 (609)
Q Consensus 261 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 340 (609)
+++.... ++. .....++.+|+..+.+..|.+ ...|
T Consensus 125 ~ls~~d~----------------------------------~g~---------~~v~r~l~gHtgylScC~f~d--D~~i 159 (343)
T KOG0286|consen 125 PLSTRDA----------------------------------EGN---------VRVSRELAGHTGYLSCCRFLD--DNHI 159 (343)
T ss_pred ecccccc----------------------------------ccc---------ceeeeeecCccceeEEEEEcC--CCce
Confidence 9863100 000 011246789999999999976 3689
Q ss_pred EEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccC
Q 007283 341 LSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHY 420 (609)
Q Consensus 341 ~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (609)
+|+|.|.++.+||..+++.....
T Consensus 160 lT~SGD~TCalWDie~g~~~~~f--------------------------------------------------------- 182 (343)
T KOG0286|consen 160 LTGSGDMTCALWDIETGQQTQVF--------------------------------------------------------- 182 (343)
T ss_pred EecCCCceEEEEEcccceEEEEe---------------------------------------------------------
Confidence 99999999999987654211100
Q ss_pred CcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcC-CCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEE
Q 007283 421 PELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAP-DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRY 499 (609)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~ 499 (609)
..|...|.+++++| +++.+++|+-|+..++||++.+.. .+.+.+|+..|++|.|
T Consensus 183 -----------------------~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c--~qtF~ghesDINsv~f 237 (343)
T KOG0286|consen 183 -----------------------HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC--VQTFEGHESDINSVRF 237 (343)
T ss_pred -----------------------cCCcccEEEEecCCCCCCeEEecccccceeeeeccCcce--eEeecccccccceEEE
Confidence 01223477888999 999999999999999999998754 6789999999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEccCCceEEe-eecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEecccc
Q 007283 500 SPDVSMFASGDVNREAIVWDRVSREVKLK-NMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHL 578 (609)
Q Consensus 500 s~~~~~l~s~s~d~~v~iwd~~~~~~~~~-~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~ 578 (609)
-|+|..+++||.|+++|+||++..+.... .-..-..+|++++||..|++|++|..|.++.|||.-+ .++...+.||.
T Consensus 238 fP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk--~e~vg~L~GHe 315 (343)
T KOG0286|consen 238 FPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLK--GERVGVLAGHE 315 (343)
T ss_pred ccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccc--cceEEEeeccC
Confidence 99999999999999999999877543221 1112346799999999999999999999999999753 35677788999
Q ss_pred CCeEEEEEc-CCCeEEEEeCCCcEEEEE
Q 007283 579 GGVYGLAFT-DEHSVVSSGEDACVRVWR 605 (609)
Q Consensus 579 ~~v~~~~~s-~~~~l~s~s~D~~i~~W~ 605 (609)
.+|.++..+ |+..+.|||.|..+|+|.
T Consensus 316 NRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 316 NRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999 778899999999999995
No 18
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=9.4e-38 Score=265.75 Aligned_cols=271 Identities=23% Similarity=0.353 Sum_probs=221.8
Q ss_pred EEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCC
Q 007283 202 KFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGG 281 (609)
Q Consensus 202 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 281 (609)
+|++++.|.+|++|...+|.+..++. ...+.|+.+...||+++||+++ ..+||+||++..+.
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTiq---h~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np-------------- 73 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTIQ---HPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNP-------------- 73 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEEe---cCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCC--------------
Confidence 78999999999999999999998884 2346799999999999999987 46899999974221
Q ss_pred ccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccce
Q 007283 282 VDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGK 361 (609)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~ 361 (609)
.+...+.+|.++|..+.|. .++++++|||.||++++|++..-.
T Consensus 74 ---------------------------------~Pv~t~e~h~kNVtaVgF~-~dgrWMyTgseDgt~kIWdlR~~~--- 116 (311)
T KOG0315|consen 74 ---------------------------------NPVATFEGHTKNVTAVGFQ-CDGRWMYTGSEDGTVKIWDLRSLS--- 116 (311)
T ss_pred ---------------------------------CceeEEeccCCceEEEEEe-ecCeEEEecCCCceEEEEeccCcc---
Confidence 1224567899999999986 456899999999999999764210
Q ss_pred eccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeee
Q 007283 362 LQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVV 441 (609)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (609)
..
T Consensus 117 ------------------------------------------------------------------------------~q 118 (311)
T KOG0315|consen 117 ------------------------------------------------------------------------------CQ 118 (311)
T ss_pred ------------------------------------------------------------------------------cc
Confidence 00
Q ss_pred EEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 007283 442 STINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRV 521 (609)
Q Consensus 442 ~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~ 521 (609)
+.+.+..+|+++.++|+...|++|.++|.|++||+..+.+..+. ...-..+|.++...|||++++.+..-|++++|++.
T Consensus 119 R~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l-iPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~ 197 (311)
T KOG0315|consen 119 RNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL-IPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLL 197 (311)
T ss_pred hhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc-CCCCCcceeeEEEcCCCcEEEEecCCccEEEEEcc
Confidence 11122357899999999999999999999999999877554332 23345689999999999999999999999999976
Q ss_pred CCce-----EEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEE
Q 007283 522 SREV-----KLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSS 595 (609)
Q Consensus 522 ~~~~-----~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~ 595 (609)
+... ++..+..|+.-|+.+.+|||+++||++|.|.+++||+.+.. ......+.+|.+++|.++|| |+++|+|+
T Consensus 198 ~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTa 276 (311)
T KOG0315|consen 198 NHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTA 276 (311)
T ss_pred CCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEec
Confidence 6432 23346689999999999999999999999999999998864 23344567899999999999 99999999
Q ss_pred eCCCcEEEEEcc
Q 007283 596 GEDACVRVWRLT 607 (609)
Q Consensus 596 s~D~~i~~W~~~ 607 (609)
|.|+.+++|++.
T Consensus 277 ssd~~~rlW~~~ 288 (311)
T KOG0315|consen 277 SSDHTARLWDLS 288 (311)
T ss_pred CCCCceeecccc
Confidence 999999999985
No 19
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5e-37 Score=261.36 Aligned_cols=298 Identities=18% Similarity=0.252 Sum_probs=234.7
Q ss_pred CCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccc
Q 007283 156 SRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGS 235 (609)
Q Consensus 156 ~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~ 235 (609)
+.+.+++++|+|++|++|...++.+.+++......|+.+.++||+++||+|+ ...|++||+.+++.-- +....+|+..
T Consensus 8 d~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~P-v~t~e~h~kN 85 (311)
T KOG0315|consen 8 DDPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNP-VATFEGHTKN 85 (311)
T ss_pred CCceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCc-eeEEeccCCc
Confidence 3456799999999999999999999999987788999999999999888665 5679999999877532 1123589999
Q ss_pred eEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCC
Q 007283 236 VYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEK 315 (609)
Q Consensus 236 V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~ 315 (609)
|+++.|..||+++++||.||++||||++... .
T Consensus 86 VtaVgF~~dgrWMyTgseDgt~kIWdlR~~~---~--------------------------------------------- 117 (311)
T KOG0315|consen 86 VTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS---C--------------------------------------------- 117 (311)
T ss_pred eEEEEEeecCeEEEecCCCceEEEEeccCcc---c---------------------------------------------
Confidence 9999999999999999999999999987310 0
Q ss_pred CceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEecc
Q 007283 316 SPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQ 395 (609)
Q Consensus 316 ~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 395 (609)
.....|...|.++..++.+ ..+++|..+|.|++||+..........
T Consensus 118 --qR~~~~~spVn~vvlhpnQ-teLis~dqsg~irvWDl~~~~c~~~li------------------------------- 163 (311)
T KOG0315|consen 118 --QRNYQHNSPVNTVVLHPNQ-TELISGDQSGNIRVWDLGENSCTHELI------------------------------- 163 (311)
T ss_pred --chhccCCCCcceEEecCCc-ceEEeecCCCcEEEEEccCCccccccC-------------------------------
Confidence 0011255677788777544 468899999999999875432111000
Q ss_pred CCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEE
Q 007283 396 GDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYS 475 (609)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~ 475 (609)
++ ...++.++++.|||..++++...|+.++|+
T Consensus 164 ----------------------Pe--------------------------~~~~i~sl~v~~dgsml~a~nnkG~cyvW~ 195 (311)
T KOG0315|consen 164 ----------------------PE--------------------------DDTSIQSLTVMPDGSMLAAANNKGNCYVWR 195 (311)
T ss_pred ----------------------CC--------------------------CCcceeeEEEcCCCcEEEEecCCccEEEEE
Confidence 00 002477889999999999999999999999
Q ss_pred ecCCe----eeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEE
Q 007283 476 IRGDT----LTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVAT 551 (609)
Q Consensus 476 ~~~~~----~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s 551 (609)
+..+. +.....++.|.+-|...-+|||+++||++|.|.+++||+..+--..-+.+.+|+..++.++||.|++||+|
T Consensus 196 l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvT 275 (311)
T KOG0315|consen 196 LLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVT 275 (311)
T ss_pred ccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEe
Confidence 86543 33445678999999999999999999999999999999987762222346789999999999999999999
Q ss_pred EeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc
Q 007283 552 GSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT 587 (609)
Q Consensus 552 ~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s 587 (609)
|+.|+++++|++...+ ......||...-.|++..
T Consensus 276 assd~~~rlW~~~~~k--~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 276 ASSDHTARLWDLSAGK--EVRQYQGHHKAAVCVALN 309 (311)
T ss_pred cCCCCceeecccccCc--eeeecCCcccccEEEEee
Confidence 9999999999998643 344456777766666643
No 20
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-36 Score=260.67 Aligned_cols=291 Identities=26% Similarity=0.365 Sum_probs=232.6
Q ss_pred eEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeC-----CCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcE
Q 007283 138 VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEG-----PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKG 212 (609)
Q Consensus 138 ~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~-----~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i 212 (609)
..++++|.+.|..++..+.++..+++++.|.++.+|+. ..+...+.+.||.-.|+.+..++||++.++++.|+++
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l 87 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL 87 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceE
Confidence 35689999999999999998888999999999999964 3456677899999999999999999999999999999
Q ss_pred EEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEc
Q 007283 213 IIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQ 292 (609)
Q Consensus 213 ~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (609)
++||..+++...++ .||...|.+++|+||.+.+++||.|++|++|++.. ..+-+...
T Consensus 88 rlWDl~~g~~t~~f---~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g----~ck~t~~~---------------- 144 (315)
T KOG0279|consen 88 RLWDLATGESTRRF---VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG----VCKYTIHE---------------- 144 (315)
T ss_pred EEEEecCCcEEEEE---EecCCceEEEEecCCCceeecCCCcceeeeeeecc----cEEEEEec----------------
Confidence 99999999877666 48999999999999999999999999999999641 11100000
Q ss_pred CCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeE
Q 007283 293 NDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKC 372 (609)
Q Consensus 293 ~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~ 372 (609)
.+|.
T Consensus 145 ----------------------------~~~~------------------------------------------------ 148 (315)
T KOG0279|consen 145 ----------------------------DSHR------------------------------------------------ 148 (315)
T ss_pred ----------------------------CCCc------------------------------------------------
Confidence 0001
Q ss_pred eeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeE
Q 007283 373 FAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTA 452 (609)
Q Consensus 373 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (609)
..|+|
T Consensus 149 ---------------------------------------------------------------------------~WVsc 153 (315)
T KOG0279|consen 149 ---------------------------------------------------------------------------EWVSC 153 (315)
T ss_pred ---------------------------------------------------------------------------CcEEE
Confidence 13566
Q ss_pred EEEcCC--CCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeee
Q 007283 453 SAIAPD--GSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNM 530 (609)
Q Consensus 453 ~~~sp~--g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~ 530 (609)
+.|+|+ ..++++++.|++|++||+++-++ ...+.+|.+.++.+++||||.++++|+.|+.+.+||+..++.. ..
T Consensus 154 vrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l--~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~l--ys 229 (315)
T KOG0279|consen 154 VRFSPNESNPIIVSASWDKTVKVWNLRNCQL--RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNL--YS 229 (315)
T ss_pred EEEcCCCCCcEEEEccCCceEEEEccCCcch--hhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCcee--Ee
Confidence 677776 56788888999999998875544 4567899999999999999999999999999999999877653 34
Q ss_pred cCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCc---ceeEec----cccCCeEEEEEc-CCCeEEEEeCCCcEE
Q 007283 531 LYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASS---RMTIKG----AHLGGVYGLAFT-DEHSVVSSGEDACVR 602 (609)
Q Consensus 531 ~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~---~~~~~~----~h~~~v~~~~~s-~~~~l~s~s~D~~i~ 602 (609)
..|...|.+++|+|+-.+|+.+ .+..|+|||++.+... .+...+ +-...-.+++|| |+..|+++=.|+.|+
T Consensus 230 l~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~ir 308 (315)
T KOG0279|consen 230 LEAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIR 308 (315)
T ss_pred ccCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEE
Confidence 6799999999999987777544 5666999999764310 011111 112234578899 899999999999999
Q ss_pred EEEcc
Q 007283 603 VWRLT 607 (609)
Q Consensus 603 ~W~~~ 607 (609)
+|.+.
T Consensus 309 v~qv~ 313 (315)
T KOG0279|consen 309 VWQVA 313 (315)
T ss_pred EEEee
Confidence 99875
No 21
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.7e-35 Score=264.36 Aligned_cols=336 Identities=19% Similarity=0.262 Sum_probs=256.9
Q ss_pred cCcCceeEEeecCCCCeEEEeCC-CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCcee
Q 007283 14 TERGRGILISGHPKSNSILYTNG-RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVL 92 (609)
Q Consensus 14 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~ 92 (609)
.|....++++.||+.++.++.++ ....||++.++.....+.+|++.|+++.||.||.|||||+.+|.|+||+..++..
T Consensus 62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~- 140 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE- 140 (399)
T ss_pred hcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCce-
Confidence 56778999999996665555544 7999999999999888999999999999999999999999999999999988653
Q ss_pred eEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEE
Q 007283 93 KKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNF 172 (609)
Q Consensus 93 ~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~ 172 (609)
+..+..--. .+.-+.|||... +++.|+.|+.+-+
T Consensus 141 ~~~~~~e~~---------------------------------------------dieWl~WHp~a~-illAG~~DGsvWm 174 (399)
T KOG0296|consen 141 QWKLDQEVE---------------------------------------------DIEWLKWHPRAH-ILLAGSTDGSVWM 174 (399)
T ss_pred EEEeecccC---------------------------------------------ceEEEEeccccc-EEEeecCCCcEEE
Confidence 222211111 233355666554 4778888888888
Q ss_pred EeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEe
Q 007283 173 YEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTAS 252 (609)
Q Consensus 173 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s 252 (609)
|.++.....+.+.||..+++|-.|.|||++++++..|++|++|+.+++..+..+.... ...-+++.++..+..++.|+
T Consensus 175 w~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e--~~~~~~~~~~~~~~~~~~g~ 252 (399)
T KOG0296|consen 175 WQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE--GLELPCISLNLAGSTLTKGN 252 (399)
T ss_pred EECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccc--cCcCCccccccccceeEecc
Confidence 9888877788899999999999999999999999999999999999999888775322 34577889999999999999
Q ss_pred CCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEE
Q 007283 253 ADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTV 332 (609)
Q Consensus 253 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~ 332 (609)
.++.+++-+.. .++++..... ..+.....+...+-+
T Consensus 253 ~e~~~~~~~~~---sgKVv~~~n~--------------------------------------~~~~l~~~~e~~~es--- 288 (399)
T KOG0296|consen 253 SEGVACGVNNG---SGKVVNCNNG--------------------------------------TVPELKPSQEELDES--- 288 (399)
T ss_pred CCccEEEEccc---cceEEEecCC--------------------------------------CCccccccchhhhhh---
Confidence 99988877543 2222211100 000000000000000
Q ss_pred ecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCc
Q 007283 333 LNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPK 412 (609)
Q Consensus 333 ~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~ 412 (609)
T Consensus 289 -------------------------------------------------------------------------------- 288 (399)
T KOG0296|consen 289 -------------------------------------------------------------------------------- 288 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCC
Q 007283 413 DLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRG 492 (609)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~ 492 (609)
+..+.++..=.++|+|+-||+|.|||+....++ . .-.|..
T Consensus 289 -------------------------------------ve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R--~-~c~he~ 328 (399)
T KOG0296|consen 289 -------------------------------------VESIPSSSKLPLAACGSVDGTIAIYDLAASTLR--H-ICEHED 328 (399)
T ss_pred -------------------------------------hhhcccccccchhhcccccceEEEEecccchhh--e-eccCCC
Confidence 111112222345788999999999999766543 2 345888
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcC
Q 007283 493 AVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEID 564 (609)
Q Consensus 493 ~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~ 564 (609)
+|..+.|-+ ..++++++.||.|+.||.++++.+. .+.+|+..|.+++++|+.++++|+|.|++.+||+++
T Consensus 329 ~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~-~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 329 GVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKF-TYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ceEEEEEcC-cchheeeccCceEEeeeccccceEE-EEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 999999988 8899999999999999999887654 578999999999999999999999999999999874
No 22
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=9.7e-33 Score=272.53 Aligned_cols=549 Identities=14% Similarity=0.174 Sum_probs=372.5
Q ss_pred eEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEEC
Q 007283 30 SILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWS 109 (609)
Q Consensus 30 ~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~s 109 (609)
++.++.|+...+||..+-..+..-..+.+.|.|++-+.+--|.|++ ..|-+|.. ++.....+..|...|.-+.
T Consensus 49 ~vtt~vgksfqvYd~~kl~ll~vs~~lp~~I~alas~~~~vy~A~g---~~i~~~~r--gk~i~~~~~~~~a~v~~l~-- 121 (910)
T KOG1539|consen 49 YVTTCVGKSFQVYDVNKLNLLFVSKPLPDKITALASDKDYVYVASG---NKIYAYAR--GKHIRHTTLLHGAKVHLLL-- 121 (910)
T ss_pred EEEEecCceEEEEeccceEEEEecCCCCCceEEEEecCceEEEecC---cEEEEEEc--cceEEEEeccccceEEEEe--
Confidence 4556789999999998877766556788889998876655555544 34666643 3333444445554444332
Q ss_pred CCCCEEEEEECCCCcceEEEEEcCCC-Ce----eEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeec
Q 007283 110 PDGLRIVACGDGKGKSLVRAFMWDSG-TN----VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSH 184 (609)
Q Consensus 110 pdg~~l~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~ 184 (609)
|=|.+++++.... .+.+|.-... .. +..++...+.|+++.-.++--..++.|+.+|.+++|+..+++.+.++
T Consensus 122 ~fGe~lia~d~~~---~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f 198 (910)
T KOG1539|consen 122 PFGEHLIAVDISN---ILFVWKTSSIQEELYLQSTFLKVEGDFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTF 198 (910)
T ss_pred eecceEEEEEccC---cEEEEEeccccccccccceeeeccCCceeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEe
Confidence 3356777765433 2333333331 11 11223333346666433333335899999999999999999999999
Q ss_pred cCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCC-ccceEEEEECCCCCe-EEEEeCCCcEEEeec
Q 007283 185 RGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGH-KGSVYAVSWSPDGKQ-VLTASADKSAKVWDI 262 (609)
Q Consensus 185 ~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~V~~l~~spd~~~-l~s~s~d~~i~iwd~ 262 (609)
+++...|+++.=+|--..+|.|..+|+|.|++.+.++.+..+. | .+.|++++|..||.. +++++..|.+.+||+
T Consensus 199 ~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk----~d~g~VtslSFrtDG~p~las~~~~G~m~~wDL 274 (910)
T KOG1539|consen 199 QEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFK----QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDL 274 (910)
T ss_pred cccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEE----ccccceeEEEeccCCCeeEEeccCCceEEEEEc
Confidence 9999999999999998899999999999999999999998874 5 489999999999985 556666699999999
Q ss_pred ccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCcee---eeCCCCCeEEEEEecCCCCE
Q 007283 263 SEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQ---LSGHMKNVTALTVLNIDPKV 339 (609)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~ 339 (609)
+. .++.......+.+++.. ..++.....+++++.|+.+++|-.+.....+.. -.||..+..++.|...++..
T Consensus 275 e~---kkl~~v~~nah~~sv~~--~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ 349 (910)
T KOG1539|consen 275 EK---KKLINVTRNAHYGSVTG--ATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHF 349 (910)
T ss_pred CC---CeeeeeeeccccCCccc--ceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEE
Confidence 74 34444443333222221 234445668889999999999987755443333 36899999999999888899
Q ss_pred EEEEecCCcEEEEecCcccc----ce---ecc-----------ccccceeEeeeeC------CcEEEEec-cceEEEEec
Q 007283 340 ILSSSYDGLIVKWIQGIGYG----GK---LQR-----------KENSQIKCFAAIE------EEIVTSGF-DNKIWRVSL 394 (609)
Q Consensus 340 ~~t~s~dg~i~~W~~~~~~~----~~---~~~-----------~~~~~~~~~~~~~------~~~~~~~~-d~~i~~~~~ 394 (609)
+.+++.|++.+.+....... .. ... ..-.++..++... +.+++... +...+.|++
T Consensus 350 ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~ 429 (910)
T KOG1539|consen 350 ILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNF 429 (910)
T ss_pred EEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEec
Confidence 99999999998885432110 00 000 0112333444321 22444443 345777877
Q ss_pred cCCcccc--cccc---ccCCCCceeEeeccCCcEEEEEeccc-EEEe--eCCeeeEEe----ccCCceeEEEEcCCCCEE
Q 007283 395 QGDQCGY--ANSI---DIGSQPKDLSVALHYPELVLVSTDSG-VVLL--RGAEVVSTI----NLRFPVTASAIAPDGSEA 462 (609)
Q Consensus 395 ~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~----~~~~~~~~~~~sp~g~~l 462 (609)
++...|. .... ........+++.. .+.+.+.+...| +-.+ +.+-....+ .++.+|+.+++..-++.+
T Consensus 430 ~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~ 508 (910)
T KOG1539|consen 430 RNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLL 508 (910)
T ss_pred cCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceE
Confidence 6654321 0000 0111122223222 334555544444 3332 223233333 466889999999999999
Q ss_pred EEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEE
Q 007283 463 IIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAW 542 (609)
Q Consensus 463 ~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~ 542 (609)
++++.||.+++|+.....+.. .+ .-...+.++.++.....+|.+..|-.|+++|..+... ...+.+|..+|++++|
T Consensus 509 vsa~~~Gilkfw~f~~k~l~~--~l-~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv-vR~f~gh~nritd~~F 584 (910)
T KOG1539|consen 509 VSAGADGILKFWDFKKKVLKK--SL-RLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV-VREFWGHGNRITDMTF 584 (910)
T ss_pred EEccCcceEEEEecCCcceee--ee-ccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhh-hHHhhccccceeeeEe
Confidence 999999999999997665422 11 2345788889999999999999999999999877654 3457789999999999
Q ss_pred CCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEeCC-CcEEEEE
Q 007283 543 SPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGED-ACVRVWR 605 (609)
Q Consensus 543 s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D-~~i~~W~ 605 (609)
||||+||++++.|++|++||+.++. .+.... -.....++.|| .+.+|+|+..| .-|.+|.
T Consensus 585 S~DgrWlisasmD~tIr~wDlpt~~--lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 585 SPDGRWLISASMDSTIRTWDLPTGT--LIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred CCCCcEEEEeecCCcEEEEeccCcc--eeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 9999999999999999999998754 222111 23457899999 67999999988 7789994
No 23
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-35 Score=266.53 Aligned_cols=308 Identities=23% Similarity=0.350 Sum_probs=252.1
Q ss_pred CCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcc
Q 007283 46 NPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKS 125 (609)
Q Consensus 46 ~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~ 125 (609)
.+...+.+.+|+..|+.+-|+|+-.+.|+++.|++|++||..+++++ +
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e-~------------------------------- 144 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELE-R------------------------------- 144 (406)
T ss_pred CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhh-h-------------------------------
Confidence 33455567899999999999999999999999999999999987642 1
Q ss_pred eEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCC-CceeeeccCcccceEEEEEcCCCCEEE
Q 007283 126 LVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP-FKFKLSHRGHSNFVNCVRFSPDGSKFI 204 (609)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~ 204 (609)
.++||.+.|.+++|+..|. .+++|+.|-.+++||.+. .++.....||.-.|.++.|-|.|.+|+
T Consensus 145 --------------~LrGHt~sv~di~~~a~Gk-~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~il 209 (406)
T KOG0295|consen 145 --------------SLRGHTDSVFDISFDASGK-YLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHIL 209 (406)
T ss_pred --------------hhhccccceeEEEEecCcc-EEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeee
Confidence 2557777778888887775 489999998899999776 567777889999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccc
Q 007283 205 SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDD 284 (609)
Q Consensus 205 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 284 (609)
+++.|.+|+.|+..++.++.++. +|+..|..++.+.||..+++++.|.++++|-+... ..+
T Consensus 210 S~srD~tik~We~~tg~cv~t~~---~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~---~~k------------- 270 (406)
T KOG0295|consen 210 SCSRDNTIKAWECDTGYCVKTFP---GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATK---QCK------------- 270 (406)
T ss_pred ecccccceeEEecccceeEEecc---CchHhEEEEEecCCeeEEEecCCCceEEEEEeccc---hhh-------------
Confidence 99999999999999999998874 89999999999999999999999999999976521 111
Q ss_pred eEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecc
Q 007283 285 MLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQR 364 (609)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~ 364 (609)
..+.+|...|-++++.+... ++.
T Consensus 271 ---------------------------------~~lR~hEh~vEci~wap~~~---~~~--------------------- 293 (406)
T KOG0295|consen 271 ---------------------------------AELREHEHPVECIAWAPESS---YPS--------------------- 293 (406)
T ss_pred ---------------------------------hhhhccccceEEEEeccccc---Ccc---------------------
Confidence 22445666676666542200 000
Q ss_pred ccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEe
Q 007283 365 KENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTI 444 (609)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (609)
+. + . +
T Consensus 294 -----i~----------------------------------~-------------------a----------t------- 298 (406)
T KOG0295|consen 294 -----IS----------------------------------E-------------------A----------T------- 298 (406)
T ss_pred -----hh----------------------------------h-------------------c----------c-------
Confidence 00 0 0 0
Q ss_pred ccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCc
Q 007283 445 NLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSRE 524 (609)
Q Consensus 445 ~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~ 524 (609)
+- .-.++++.+|+.|++|++||+..+.+ ..++.+|...|..++|+|.|+|++|+..|+++++||+.+.+
T Consensus 299 ----~~-----~~~~~~l~s~SrDktIk~wdv~tg~c--L~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~ 367 (406)
T KOG0295|consen 299 ----GS-----TNGGQVLGSGSRDKTIKIWDVSTGMC--LFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ 367 (406)
T ss_pred ----CC-----CCCccEEEeecccceEEEEeccCCeE--EEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce
Confidence 00 00367899999999999999998865 57889999999999999999999999999999999987765
Q ss_pred eEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEc
Q 007283 525 VKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEI 563 (609)
Q Consensus 525 ~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~ 563 (609)
. .+.+..|..-|++++|..+..+++||+.|.++++|..
T Consensus 368 c-mk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 368 C-MKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred e-eeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 4 5567789999999999999999999999999999963
No 24
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-34 Score=250.36 Aligned_cols=283 Identities=21% Similarity=0.323 Sum_probs=228.6
Q ss_pred cCcCceeEEeecCCCCeEEEeC--CCEEEEEeCCCC-----ccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcC
Q 007283 14 TERGRGILISGHPKSNSILYTN--GRSVIILDLSNP-----LQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGA 86 (609)
Q Consensus 14 ~~~~~~~~~~~~~~~~~l~~~~--~~~~~i~~~~~~-----~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~ 86 (609)
.|.+-++.++-.+++.-++++. +.++++|++... ..++.|.||+..|+.++.++||++.+|++.|+++|+||+
T Consensus 13 gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl 92 (315)
T KOG0279|consen 13 GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDL 92 (315)
T ss_pred CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEe
Confidence 4566677777777755455553 578999998543 346678999999999999999999999999999999999
Q ss_pred CCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCC-CCeeEEEecC--CccEEEEEEeeCC-CeEEE
Q 007283 87 HNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDS-GTNVGEFDGH--SRRVLSCAFKPSR-PFRIA 162 (609)
Q Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h--~~~v~~~~~~p~~-~~~i~ 162 (609)
.+++ ..+.|.+|...|.+++|+||.+++++.+-++ . +..|+. +.+..++..+ ++-|.++.|+|+. ..+|+
T Consensus 93 ~~g~-~t~~f~GH~~dVlsva~s~dn~qivSGSrDk---T--iklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Iv 166 (315)
T KOG0279|consen 93 ATGE-STRRFVGHTKDVLSVAFSTDNRQIVSGSRDK---T--IKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIV 166 (315)
T ss_pred cCCc-EEEEEEecCCceEEEEecCCCceeecCCCcc---e--eeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEE
Confidence 9875 4467999999999999999999999866444 3 445553 4566666554 6789999999984 45799
Q ss_pred EecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEEC
Q 007283 163 TCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWS 242 (609)
Q Consensus 163 t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~s 242 (609)
++|.|+++++||..+.+....+.||..+++.+++||||.+.++|+.||.+.+||...++.+..+ +|...|.+++|+
T Consensus 167 s~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl----~a~~~v~sl~fs 242 (315)
T KOG0279|consen 167 SASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL----EAFDIVNSLCFS 242 (315)
T ss_pred EccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec----cCCCeEeeEEec
Confidence 9999999999999999999999999999999999999999999999999999999999988776 588899999999
Q ss_pred CCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCC----ccceEEEEEEc--CCeEEEEEcCCcEEEEeC
Q 007283 243 PDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGG----VDDMLVGCLWQ--NDFLVIVSLGGTISIFSA 310 (609)
Q Consensus 243 pd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~g~i~~~~~ 310 (609)
|+...|+.+ .+..|+|||+.. +..+.++.....+. -...+..+.|+ +..|+++..++.|++|.+
T Consensus 243 pnrywL~~a-t~~sIkIwdl~~---~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 243 PNRYWLCAA-TATSIKIWDLES---KAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQV 312 (315)
T ss_pred CCceeEeec-cCCceEEEeccc---hhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEe
Confidence 987766655 466799999873 44444444332221 12345566676 679999999999999974
No 25
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.3e-34 Score=245.65 Aligned_cols=291 Identities=24% Similarity=0.413 Sum_probs=224.1
Q ss_pred eEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCC---CCceeeec-cCcccceEEEEEcCCCCEEEEEeCCCcEE
Q 007283 138 VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGP---PFKFKLSH-RGHSNFVNCVRFSPDGSKFISVSSDKKGI 213 (609)
Q Consensus 138 ~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~---~~~~~~~~-~~h~~~v~~l~~s~dg~~l~s~~~d~~i~ 213 (609)
...+.+|.+++..++|+|....+||+||.|+.+++|+.. +..++..+ .+|++.|.+++|+|.|++|++|+.|.++.
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV 86 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence 345789999999999999844479999999999999876 34454444 47999999999999999999999999999
Q ss_pred EEeCCCC--ccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEE
Q 007283 214 IYDGKTA--DKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW 291 (609)
Q Consensus 214 iwd~~~~--~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (609)
||.-..+ +++.. ..||...|.+++|+++|++||+++.|+.|-||.+.++... .
T Consensus 87 Iw~k~~~efecv~~---lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEf-------------------e--- 141 (312)
T KOG0645|consen 87 IWKKEDGEFECVAT---LEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEF-------------------E--- 141 (312)
T ss_pred EeecCCCceeEEee---eeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcE-------------------E---
Confidence 9975433 33333 3699999999999999999999999999999987532100 0
Q ss_pred cCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecccccccee
Q 007283 292 QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIK 371 (609)
Q Consensus 292 ~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~ 371 (609)
....+++|++.|..+.+++. ..+|+++|.|++|++|
T Consensus 142 ------------------------c~aVL~~HtqDVK~V~WHPt-~dlL~S~SYDnTIk~~------------------- 177 (312)
T KOG0645|consen 142 ------------------------CIAVLQEHTQDVKHVIWHPT-EDLLFSCSYDNTIKVY------------------- 177 (312)
T ss_pred ------------------------EEeeeccccccccEEEEcCC-cceeEEeccCCeEEEE-------------------
Confidence 01235567777777766643 2456666666666665
Q ss_pred EeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCcee
Q 007283 372 CFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVT 451 (609)
Q Consensus 372 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (609)
T Consensus 178 -------------------------------------------------------------------------------- 177 (312)
T KOG0645|consen 178 -------------------------------------------------------------------------------- 177 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEec-CCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeee
Q 007283 452 ASAIAPDGSEAIIGSQDGKLRVYSIR-GDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNM 530 (609)
Q Consensus 452 ~~~~sp~g~~l~~gs~dg~i~iw~~~-~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~ 530 (609)
+-. .+.....+++.+|...|.+++|+|.|..+++++.|++++||-.... ..
T Consensus 178 -----------------------~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~ 229 (312)
T KOG0645|consen 178 -----------------------RDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LS 229 (312)
T ss_pred -----------------------eecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-----cc
Confidence 322 2223335678889999999999999999999999999999974321 12
Q ss_pred cCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCC-C----cceeEeccccCCeEEEEEcC--CCeEEEEeCCCcEEE
Q 007283 531 LYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPA-S----SRMTIKGAHLGGVYGLAFTD--EHSVVSSGEDACVRV 603 (609)
Q Consensus 531 ~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~-~----~~~~~~~~h~~~v~~~~~s~--~~~l~s~s~D~~i~~ 603 (609)
..|+..+..++|- +..|||++.|+.|++|...... . .......+|...|++++|.+ .+.|+|+|.||.+++
T Consensus 230 ~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~ 307 (312)
T KOG0645|consen 230 GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNF 307 (312)
T ss_pred hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEE
Confidence 4588899999997 5679999999999999865311 0 11234568999999999996 578999999999999
Q ss_pred EEcc
Q 007283 604 WRLT 607 (609)
Q Consensus 604 W~~~ 607 (609)
|.+.
T Consensus 308 W~l~ 311 (312)
T KOG0645|consen 308 WELE 311 (312)
T ss_pred EEec
Confidence 9874
No 26
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-32 Score=263.57 Aligned_cols=467 Identities=21% Similarity=0.342 Sum_probs=312.0
Q ss_pred cccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEE
Q 007283 51 SIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAF 130 (609)
Q Consensus 51 ~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~ 130 (609)
+.+..|++.|.++.|+|.-.++.++--.|+|+||+.+++. +.+.+.....+|++..|-+-..++++.+|+. .+|++
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt-mVksfeV~~~PvRa~kfiaRknWiv~GsDD~---~IrVf 82 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT-MVKSFEVSEVPVRAAKFIARKNWIVTGSDDM---QIRVF 82 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccce-eeeeeeecccchhhheeeeccceEEEecCCc---eEEEE
Confidence 3455688999999999999999999999999999998864 4556777788999999999888999877654 58999
Q ss_pred EcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCC-CCceeeeccCcccceEEEEEcCC-CCEEEEEeC
Q 007283 131 MWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGP-PFKFKLSHRGHSNFVNCVRFSPD-GSKFISVSS 208 (609)
Q Consensus 131 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~-~~~~~~~~~~h~~~v~~l~~s~d-g~~l~s~~~ 208 (609)
.+.+...+.+|..|++.|.+++.||+.++ +.+++.|-+|++|+.+ .+.+.++|.||.-+|-+++|.|. .+.+|+++-
T Consensus 83 nynt~ekV~~FeAH~DyIR~iavHPt~P~-vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 83 NYNTGEKVKTFEAHSDYIRSIAVHPTLPY-VLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred ecccceeeEEeeccccceeeeeecCCCCe-EEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 99999999999999999999999999996 8899999999999965 46888999999999999999996 568999999
Q ss_pred CCcEEEEeCCCCccccccCcCCCCccceEEEEECCCC--CeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceE
Q 007283 209 DKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDG--KQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDML 286 (609)
Q Consensus 209 d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (609)
|++|++|.........++ +||...|+++.+-|-| .+|+||+.|.++++||..++
T Consensus 162 DrTVKVWslgs~~~nfTl---~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk--------------------- 217 (794)
T KOG0276|consen 162 DRTVKVWSLGSPHPNFTL---EGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK--------------------- 217 (794)
T ss_pred cccEEEEEcCCCCCceee---eccccCcceEEeccCCCcceEEecCCCceEEEeecchH---------------------
Confidence 999999999888877777 4999999999998744 69999999999999998521
Q ss_pred EEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecccc
Q 007283 287 VGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKE 366 (609)
Q Consensus 287 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~ 366 (609)
....++.||..+|..+.|++.- .+++|||.||++|+|...+-.......-.
T Consensus 218 ----------------------------~CV~TLeGHt~Nvs~v~fhp~l-piiisgsEDGTvriWhs~Ty~lE~tLn~g 268 (794)
T KOG0276|consen 218 ----------------------------SCVQTLEGHTNNVSFVFFHPEL-PIIISGSEDGTVRIWNSKTYKLEKTLNYG 268 (794)
T ss_pred ----------------------------HHHHHhhcccccceEEEecCCC-cEEEEecCCccEEEecCcceehhhhhhcC
Confidence 1124577899999999998654 48999999999999976543322222122
Q ss_pred ccceeEeeee-CCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecc-c-EEEeeCCeeeEE
Q 007283 367 NSQIKCFAAI-EEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDS-G-VVLLRGAEVVST 443 (609)
Q Consensus 367 ~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~ 443 (609)
-+++.|++.. +...+..++|+....+.+...... ...... ..+..+.+. ++....... + ..-+..++.+..
T Consensus 269 leRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~----vsMd~~-gKIiwa~~~-ei~~~~~ks~~~~~ev~DgErL~L 342 (794)
T KOG0276|consen 269 LERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPA----VSMDSN-GKIIWAVHS-EIQAVNLKSVGAQKEVTDGERLPL 342 (794)
T ss_pred CceEEEEeecCCCCeEEEeccCCcEEEEccCCCCc----eeecCC-ccEEEEcCc-eeeeeeceeccCcccccCCccccc
Confidence 3456777652 333455555555444433222100 000000 001111110 000000000 0 000011111100
Q ss_pred ----e-ccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEE
Q 007283 444 ----I-NLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVW 518 (609)
Q Consensus 444 ----~-~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iw 518 (609)
+ .+..-...++.+|+|+++++| .||.-.||.-- .+ -..+.|.-....|++|...+|+--.++.++++
T Consensus 343 svKeLgs~eiyPq~L~hsPNGrfV~Vc-gdGEyiIyTal--a~-----RnK~fG~~~eFvw~~dsne~avRes~~~vki~ 414 (794)
T KOG0276|consen 343 SVKELGSVEIYPQTLAHSPNGRFVVVC-GDGEYIIYTAL--AL-----RNKAFGSGLEFVWAADSNEFAVRESNGNVKIF 414 (794)
T ss_pred hhhhccccccchHHhccCCCCcEEEEe-cCccEEEEEee--eh-----hhcccccceeEEEcCCCCeEEEEecCCceEEE
Confidence 0 011223457889999977776 58988888532 11 12344555667789998888888788888888
Q ss_pred EccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCc-ceeEeccccCCeEEEEEcCCCeEEEEeC
Q 007283 519 DRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASS-RMTIKGAHLGGVYGLAFTDEHSVVSSGE 597 (609)
Q Consensus 519 d~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~-~~~~~~~h~~~v~~~~~s~~~~l~s~s~ 597 (609)
- +.+. .+.+ .....+..+. .|.+|..-+ ++.+.+||-+..... ++.+ ....+.|+|+..|+..+.
T Consensus 415 k--nfke-~ksi---~~~~~~e~i~-gg~Llg~~s-s~~~~fydW~~~~lVrrI~v------~~k~v~w~d~g~lVai~~ 480 (794)
T KOG0276|consen 415 K--NFKE-HKSI---RPDMSAEGIF-GGPLLGVRS-SDFLCFYDWESGELVRRIEV------TSKHVYWSDNGELVAIAG 480 (794)
T ss_pred e--ccee-cccc---ccccceeeec-CCceEEEEe-CCeEEEEEcccceEEEEEee------ccceeEEecCCCEEEEEe
Confidence 2 2211 1111 1111122222 355555544 456899987653211 1111 125688896544554444
Q ss_pred CCcEEE
Q 007283 598 DACVRV 603 (609)
Q Consensus 598 D~~i~~ 603 (609)
|-+-.+
T Consensus 481 d~Sfyi 486 (794)
T KOG0276|consen 481 DDSFYI 486 (794)
T ss_pred cCceeE
Confidence 445333
No 27
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.6e-33 Score=260.83 Aligned_cols=326 Identities=24% Similarity=0.363 Sum_probs=252.0
Q ss_pred EecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCC--Cceee--ec------cC----cccceEEEEEcCCCCEEEEE
Q 007283 141 FDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP--FKFKL--SH------RG----HSNFVNCVRFSPDGSKFISV 206 (609)
Q Consensus 141 ~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~--~~~~~--~~------~~----h~~~v~~l~~s~dg~~l~s~ 206 (609)
...|..+|..++|.|-..-.+++|+.|...++|+... ..... .+ .+ ....|++|+|+.+|..||+|
T Consensus 174 vl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG 253 (524)
T KOG0273|consen 174 VLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATG 253 (524)
T ss_pred eccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEe
Confidence 3349999999999998776799999999999998653 11111 11 11 23679999999999999999
Q ss_pred eCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceE
Q 007283 207 SSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDML 286 (609)
Q Consensus 207 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (609)
+.||.++||+ ..+..+.++. .|+++|.++.|..+|.||++++.|+++.+||... +...+.+.
T Consensus 254 ~~~G~~riw~-~~G~l~~tl~---~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~---g~~~q~f~----------- 315 (524)
T KOG0273|consen 254 SEDGEARIWN-KDGNLISTLG---QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT---GTVKQQFE----------- 315 (524)
T ss_pred ecCcEEEEEe-cCchhhhhhh---ccCCceEEEEEcCCCCEEEeccCCccEEEEeccC---ceEEEeee-----------
Confidence 9999999998 4566676664 6999999999999999999999999999999752 33333222
Q ss_pred EEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecccc
Q 007283 287 VGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKE 366 (609)
Q Consensus 287 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~ 366 (609)
.|...-..+.|-+. ..+++++.|+.|++..++..
T Consensus 316 -----------------------------------~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~--------- 349 (524)
T KOG0273|consen 316 -----------------------------------FHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGED--------- 349 (524)
T ss_pred -----------------------------------eccCCccceEEecC--ceEeecCCCceEEEEEecCC---------
Confidence 23222223444332 56889999999888743211
Q ss_pred ccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEecc
Q 007283 367 NSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINL 446 (609)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (609)
.++ .....|
T Consensus 350 -~P~----------------------------------------------------------------------~t~~GH 358 (524)
T KOG0273|consen 350 -RPV----------------------------------------------------------------------KTFIGH 358 (524)
T ss_pred -Ccc----------------------------------------------------------------------eeeecc
Confidence 000 011123
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCC---------CEEEEEeCCCeEEE
Q 007283 447 RFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDV---------SMFASGDVNREAIV 517 (609)
Q Consensus 447 ~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~---------~~l~s~s~d~~v~i 517 (609)
..+|.++.+.|.|.+|+++|.|++++||++..... ..-+.+|...|..+.|||.| ..+++++.|.+|++
T Consensus 359 ~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~--~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~l 436 (524)
T KOG0273|consen 359 HGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS--VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKL 436 (524)
T ss_pred cCceEEEEECCCCceEEEecCCCeeEeeecCCCcc--hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEE
Confidence 45789999999999999999999999999765443 34578899999999999986 47999999999999
Q ss_pred EEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEe
Q 007283 518 WDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSG 596 (609)
Q Consensus 518 wd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s 596 (609)
||+..+... ..+..|+.+|.+|+|||+|+++|+|+.||.|.+|+..+.+ +.... .-.+.|..|.|+ ++++|..+-
T Consensus 437 wdv~~gv~i-~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~--l~~s~-~~~~~Ifel~Wn~~G~kl~~~~ 512 (524)
T KOG0273|consen 437 WDVESGVPI-HTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK--LVKSY-QGTGGIFELCWNAAGDKLGACA 512 (524)
T ss_pred EEccCCcee-EeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchh--eeEee-cCCCeEEEEEEcCCCCEEEEEe
Confidence 999877654 3467899999999999999999999999999999987643 22222 345679999999 888898888
Q ss_pred CCCcEEEEEcc
Q 007283 597 EDACVRVWRLT 607 (609)
Q Consensus 597 ~D~~i~~W~~~ 607 (609)
.|+.+++-++.
T Consensus 513 sd~~vcvldlr 523 (524)
T KOG0273|consen 513 SDGSVCVLDLR 523 (524)
T ss_pred cCCCceEEEec
Confidence 99999998763
No 28
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=9.1e-34 Score=244.67 Aligned_cols=286 Identities=21% Similarity=0.360 Sum_probs=226.6
Q ss_pred cccccCCCCcEEEEECCC-CCEEEEEeCCCcEEEEcCCCCc--eeeEEE-eecccceeEEEECCCCCEEEEEECCCCcce
Q 007283 51 SIYGEHAYPATVARFSPN-GEWIASADVSGTVRIWGAHNDH--VLKKEF-RVLSGRIDDLQWSPDGLRIVACGDGKGKSL 126 (609)
Q Consensus 51 ~~~~~h~~~v~~~~~sp~-g~~las~~~d~~i~vWd~~~~~--~~~~~~-~~~~~~v~~~~~spdg~~l~~~~~~~~~~~ 126 (609)
+.+.+|++.+..++++|- |.+|||++.|++||||+...+. .++..+ .+|...|+.++|+|.|++|++.+-+..
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t--- 84 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT--- 84 (312)
T ss_pred EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce---
Confidence 557899999999999998 9999999999999999987422 233333 357889999999999998888775432
Q ss_pred EEEEEcCCC----CeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCC---CCceeeeccCcccceEEEEEcCC
Q 007283 127 VRAFMWDSG----TNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGP---PFKFKLSHRGHSNFVNCVRFSPD 199 (609)
Q Consensus 127 ~~~~~~~~~----~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~---~~~~~~~~~~h~~~v~~l~~s~d 199 (609)
.-+|... .++..+.||..+|.+++|+++|.+ +|+|++|..+=+|+.. .+.+...+.+|.+.|..+.|+|.
T Consensus 85 --~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~-LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 85 --VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNY-LATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT 161 (312)
T ss_pred --EEEeecCCCceeEEeeeeccccceeEEEEcCCCCE-EEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC
Confidence 3455544 678889999999999999999985 9999999999999753 56778889999999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCC
Q 007283 200 GSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGS 279 (609)
Q Consensus 200 g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~ 279 (609)
..+|++++.|.+|++|....+..........+|.+.|.+++|+|.|..|++++.|++++||-....-.+.
T Consensus 162 ~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~---------- 231 (312)
T KOG0645|consen 162 EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGM---------- 231 (312)
T ss_pred cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcchh----------
Confidence 8999999999999999766333222222235899999999999999999999999999999743111110
Q ss_pred CCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCC-CCCc-----eeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEe
Q 007283 280 GGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDL-EKSP-----LQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWI 353 (609)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~-~~~~-----~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~ 353 (609)
....+....|.+..+++++.|+.|++|.-... ..+. ..-..|...|.++.+.+..++++++|+.||.|++|.
T Consensus 232 --~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 232 --HSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred --cccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 11123345567889999999999999975432 1111 123569999999999875568999999999999995
Q ss_pred c
Q 007283 354 Q 354 (609)
Q Consensus 354 ~ 354 (609)
+
T Consensus 310 l 310 (312)
T KOG0645|consen 310 L 310 (312)
T ss_pred e
Confidence 4
No 29
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.7e-33 Score=252.81 Aligned_cols=333 Identities=20% Similarity=0.302 Sum_probs=260.0
Q ss_pred eeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007283 137 NVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYD 216 (609)
Q Consensus 137 ~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd 216 (609)
.+..|.+|.+.|.+++.+|+.+ .+||||.|..-++|+..++.....+.+|+..|+|+.|+.||.+||||.-+|.++||.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 4567899999999999999665 599999999999999999998899999999999999999999999999999999999
Q ss_pred CCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeE
Q 007283 217 GKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFL 296 (609)
Q Consensus 217 ~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (609)
..++.....+- ...+.+.-+.|||.+..|+.|+.||.+.+|.+... ..
T Consensus 135 ~stg~~~~~~~---~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~---~~-------------------------- 182 (399)
T KOG0296|consen 135 VSTGGEQWKLD---QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ---AL-------------------------- 182 (399)
T ss_pred cccCceEEEee---cccCceEEEEecccccEEEeecCCCcEEEEECCCc---ce--------------------------
Confidence 99988766552 34567889999999999999999999999987521 11
Q ss_pred EEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeee
Q 007283 297 VIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAI 376 (609)
Q Consensus 297 ~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~ 376 (609)
.+.+.||..++++-.|.+ +++.++++..||+|++|++.++.......
T Consensus 183 --------------------~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dgti~~Wn~ktg~p~~~~~------------ 229 (399)
T KOG0296|consen 183 --------------------CKVMSGHNSPCTCGEFIP-DGKRILTGYDDGTIIVWNPKTGQPLHKIT------------ 229 (399)
T ss_pred --------------------eeEecCCCCCcccccccC-CCceEEEEecCceEEEEecCCCceeEEec------------
Confidence 134567888888888775 47899999999999999876542110000
Q ss_pred CCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEc
Q 007283 377 EEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIA 456 (609)
Q Consensus 377 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 456 (609)
+. + +.+..+++++
T Consensus 230 -------~~-----------------------------------------------------e-------~~~~~~~~~~ 242 (399)
T KOG0296|consen 230 -------QA-----------------------------------------------------E-------GLELPCISLN 242 (399)
T ss_pred -------cc-----------------------------------------------------c-------cCcCCccccc
Confidence 00 0 0123445556
Q ss_pred CCCCEEEEEeCCCcEEEEEecCCeeeeeE------EEecCCCc---eEEEEECCCCCEEEEEeCCCeEEEEEccCCceEE
Q 007283 457 PDGSEAIIGSQDGKLRVYSIRGDTLTEEA------VLEKHRGA---VSVIRYSPDVSMFASGDVNREAIVWDRVSREVKL 527 (609)
Q Consensus 457 p~g~~l~~gs~dg~i~iw~~~~~~~~~~~------~~~~h~~~---i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~ 527 (609)
.++..++.|+.++.+++-+..+++..... ....+... |.++.+|..-.+.|.|+.||++.|||+.....+
T Consensus 243 ~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R- 321 (399)
T KOG0296|consen 243 LAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLR- 321 (399)
T ss_pred cccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhh-
Confidence 66666777777777766665544422100 11133444 445555666789999999999999998765543
Q ss_pred eeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEc
Q 007283 528 KNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRL 606 (609)
Q Consensus 528 ~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~ 606 (609)
....|...|+.+.|-+ ..+|++++.||.|+.||..++ .+...+.||...|.+++.+ +.+.++|+|.|++.+++.+
T Consensus 322 -~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG--~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 322 -HICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTG--QLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred -eeccCCCceEEEEEcC-cchheeeccCceEEeeecccc--ceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 3457999999999998 788999999999999998875 4567788999999999999 7789999999999999987
Q ss_pred c
Q 007283 607 T 607 (609)
Q Consensus 607 ~ 607 (609)
.
T Consensus 398 ~ 398 (399)
T KOG0296|consen 398 P 398 (399)
T ss_pred C
Confidence 4
No 30
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-34 Score=257.81 Aligned_cols=290 Identities=27% Similarity=0.379 Sum_probs=242.3
Q ss_pred ceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEE
Q 007283 179 KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAK 258 (609)
Q Consensus 179 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~ 258 (609)
.....+.||..+|+.+.|+|+-...++++.|.+|++||..+++....+ +||...|..++|+..|++|++++.|-.++
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~L---rGHt~sv~di~~~a~Gk~l~tcSsDl~~~ 175 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSL---RGHTDSVFDISFDASGKYLATCSSDLSAK 175 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhh---hccccceeEEEEecCccEEEecCCccchh
Confidence 344556789999999999999989999999999999999999986665 59999999999999999999999999999
Q ss_pred EeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCC
Q 007283 259 VWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPK 338 (609)
Q Consensus 259 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 338 (609)
+||.... . .....+.+|...|.++.+.+. +.
T Consensus 176 LWd~~~~--~----------------------------------------------~c~ks~~gh~h~vS~V~f~P~-gd 206 (406)
T KOG0295|consen 176 LWDFDTF--F----------------------------------------------RCIKSLIGHEHGVSSVFFLPL-GD 206 (406)
T ss_pred heeHHHH--H----------------------------------------------HHHHHhcCcccceeeEEEEec-CC
Confidence 9997521 0 011335578889999998865 47
Q ss_pred EEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeec
Q 007283 339 VILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVAL 418 (609)
Q Consensus 339 ~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (609)
.+++++.|.+|+.|+..+++......
T Consensus 207 ~ilS~srD~tik~We~~tg~cv~t~~------------------------------------------------------ 232 (406)
T KOG0295|consen 207 HILSCSRDNTIKAWECDTGYCVKTFP------------------------------------------------------ 232 (406)
T ss_pred eeeecccccceeEEecccceeEEecc------------------------------------------------------
Confidence 99999999999999876653221110
Q ss_pred cCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEE
Q 007283 419 HYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIR 498 (609)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~ 498 (609)
.+...+..++++.||..+|+++.|.+|++|-+.+... +..+..|+-+|.|++
T Consensus 233 --------------------------~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~--k~~lR~hEh~vEci~ 284 (406)
T KOG0295|consen 233 --------------------------GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQC--KAELREHEHPVECIA 284 (406)
T ss_pred --------------------------CchHhEEEEEecCCeeEEEecCCCceEEEEEeccchh--hhhhhccccceEEEE
Confidence 0112466778899999999999999999998876543 466788999999999
Q ss_pred ECCC---------------CCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEc
Q 007283 499 YSPD---------------VSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEI 563 (609)
Q Consensus 499 ~s~~---------------~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~ 563 (609)
|.|. ++++.++|.|++|++||+.++... -.+.+|...|..++|+|-|+||++...|++++|||+
T Consensus 285 wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL-~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl 363 (406)
T KOG0295|consen 285 WAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL-FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDL 363 (406)
T ss_pred ecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE-EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEe
Confidence 9775 258999999999999999888654 468899999999999999999999999999999999
Q ss_pred CCCCCcceeEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEE
Q 007283 564 DKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWR 605 (609)
Q Consensus 564 ~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~ 605 (609)
... ..+..+.+|..-|++++|. +..+++|||-|-++|+|.
T Consensus 364 ~~~--~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 364 KNL--QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred ccc--eeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 764 3456667899999999999 667999999999999996
No 31
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.3e-31 Score=259.95 Aligned_cols=494 Identities=17% Similarity=0.229 Sum_probs=321.2
Q ss_pred ceeEEeecCCCCeEEEeC-CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEE
Q 007283 18 RGILISGHPKSNSILYTN-GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEF 96 (609)
Q Consensus 18 ~~~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~ 96 (609)
|+-.|+|||+.-+|+..- .+.|.+||-..+..+..|.+|.++|..++|+|++.+++||+.|..|+||...+.++ ..++
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc-lftL 89 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC-LFTL 89 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccccee-hhhh
Confidence 555899999999887764 57999999988888888999999999999999999999999999999999988664 4567
Q ss_pred eecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCC
Q 007283 97 RVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGP 176 (609)
Q Consensus 97 ~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~ 176 (609)
.+|-.-|..+.|++.--++++++|++ ++|+|.|.+.+++..+.||.-.|.|..|+|... .+++++-|.+|++||+.
T Consensus 90 ~GHlDYVRt~~FHheyPWIlSASDDQ---TIrIWNwqsr~~iavltGHnHYVMcAqFhptED-lIVSaSLDQTVRVWDis 165 (1202)
T KOG0292|consen 90 LGHLDYVRTVFFHHEYPWILSASDDQ---TIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED-LIVSASLDQTVRVWDIS 165 (1202)
T ss_pred ccccceeEEeeccCCCceEEEccCCC---eEEEEeccCCceEEEEecCceEEEeeccCCccc-eEEEecccceEEEEeec
Confidence 88999999999999999999999876 689999999999999999999999999999877 49999999999999841
Q ss_pred --------CC-------------------c--eeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccC
Q 007283 177 --------PF-------------------K--FKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELS 227 (609)
Q Consensus 177 --------~~-------------------~--~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~ 227 (609)
++ . .++.+.||.+.|+-++|+|.-..|++|++|..|++|....-+.+.. -
T Consensus 166 GLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEv-D 244 (1202)
T KOG0292|consen 166 GLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV-D 244 (1202)
T ss_pred chhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceee-h
Confidence 11 1 1234678999999999999999999999999999998776554432 2
Q ss_pred cCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEE-EcCCeEEEEEcCCcEE
Q 007283 228 PEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL-WQNDFLVIVSLGGTIS 306 (609)
Q Consensus 228 ~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~i~ 306 (609)
...||.+.|.++-|+|...+++|.|.|++||+||+.. ....+++.... +..+... ...-.++.++.|+.+-
T Consensus 245 tcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k---Rt~v~tfrren-----dRFW~laahP~lNLfAAgHDsGm~ 316 (1202)
T KOG0292|consen 245 TCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK---RTSVQTFRREN-----DRFWILAAHPELNLFAAGHDSGMI 316 (1202)
T ss_pred hhhcccCCcceEEecCccceeEecCCCccEEEEeccc---ccceeeeeccC-----CeEEEEEecCCcceeeeecCCceE
Confidence 2459999999999999999999999999999999973 33445553221 1222222 2345788889999888
Q ss_pred EEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceec-cc----cccceeEeeee--CCc
Q 007283 307 IFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQ-RK----ENSQIKCFAAI--EEE 379 (609)
Q Consensus 307 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~-~~----~~~~~~~~~~~--~~~ 379 (609)
+|.+.... . +.+++ ++.++..- |..|+..++.+....... .+ ...+...++.. .+.
T Consensus 317 VFkleREr-----------p--a~~v~--~n~LfYvk--d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~ 379 (1202)
T KOG0292|consen 317 VFKLERER-----------P--AYAVN--GNGLFYVK--DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENA 379 (1202)
T ss_pred EEEEcccC-----------c--eEEEc--CCEEEEEc--cceEEeeeccccccceeEeccCCCcccCCcceeeeccccCe
Confidence 88865211 1 11222 22233332 777777776553221111 11 11223333332 222
Q ss_pred -EEEEeccceEEEE-eccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeC--CeeeEEeccCCceeEEEE
Q 007283 380 -IVTSGFDNKIWRV-SLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRG--AEVVSTINLRFPVTASAI 455 (609)
Q Consensus 380 -~~~~~~d~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 455 (609)
++++..++..+.+ .+.....+..............++-..++.+.+.........+++ ++..+.+.....+..+-.
T Consensus 380 vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~~~~~~~IF~ 459 (1202)
T KOG0292|consen 380 VLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLLPESTDDIFY 459 (1202)
T ss_pred EEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEecceEEEEecCcceEEecccchhhhcccCcccccceee
Confidence 3333334433322 222211110000000000000111111122333322121122221 111222222222333444
Q ss_pred cCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCC
Q 007283 456 APDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTA 535 (609)
Q Consensus 456 sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~ 535 (609)
...|..+.. ....|.+||++.... +.+-....|.-+.||+|++++|--+ -.+|.|.+..- .+..-..-+-
T Consensus 460 ag~g~lll~--~~~~v~lfdvQq~~~----~~si~~s~vkyvvws~dm~~vAll~-Kh~i~i~~kkL---~l~~sihEti 529 (1202)
T KOG0292|consen 460 AGTGNLLLR--SPDSVTLFDVQQKKK----VGSIKVSKVKYVVWSNDMSRVALLS-KHTITIADKKL---ELLCSIHETI 529 (1202)
T ss_pred ccCccEEEE--cCCeEEEEEeecceE----EEEEecCceeEEEEcCccchhhhcc-cceEEEEecch---hheecchhee
Confidence 445554443 456799999976543 2233456788999999998877654 35788877321 1111112234
Q ss_pred ceEEEEECCCCcEEEEE
Q 007283 536 RINCLAWSPNNSMVATG 552 (609)
Q Consensus 536 ~i~~l~~s~d~~~l~s~ 552 (609)
+|.+-+|..+|-+|.+-
T Consensus 530 riksgawde~gVfiYtT 546 (1202)
T KOG0292|consen 530 RIKSGAWDEDGVFIYTT 546 (1202)
T ss_pred EeeeceeccCceEEEEe
Confidence 67778887777665543
No 32
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.5e-34 Score=284.94 Aligned_cols=236 Identities=23% Similarity=0.353 Sum_probs=212.1
Q ss_pred eEEeecCCCCeEEEe-CCCEEEEEeCCCCc-------------------------------cccccccCCCCcEEEEECC
Q 007283 20 ILISGHPKSNSILYT-NGRSVIILDLSNPL-------------------------------QVSIYGEHAYPATVARFSP 67 (609)
Q Consensus 20 ~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~-------------------------------~~~~~~~h~~~v~~~~~sp 67 (609)
..+.+++|+..||.+ .+..|.+|++...+ ....+.||.++|..++|+|
T Consensus 382 ~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP 461 (707)
T KOG0263|consen 382 TCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP 461 (707)
T ss_pred eeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecc
Confidence 477799998877765 46799999986311 1123669999999999999
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCcc
Q 007283 68 NGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRR 147 (609)
Q Consensus 68 ~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 147 (609)
+.++|+|+|.|++||+|.+.+..+ ...+++|..+|..++|+|-|-++++++.++ +.++|.-+...++..|.+|...
T Consensus 462 d~rfLlScSED~svRLWsl~t~s~-~V~y~GH~~PVwdV~F~P~GyYFatas~D~---tArLWs~d~~~PlRifaghlsD 537 (707)
T KOG0263|consen 462 DRRFLLSCSEDSSVRLWSLDTWSC-LVIYKGHLAPVWDVQFAPRGYYFATASHDQ---TARLWSTDHNKPLRIFAGHLSD 537 (707)
T ss_pred cccceeeccCCcceeeeeccccee-EEEecCCCcceeeEEecCCceEEEecCCCc---eeeeeecccCCchhhhcccccc
Confidence 999999999999999999998654 346789999999999999999999987655 5788988888999999999999
Q ss_pred EEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccC
Q 007283 148 VLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELS 227 (609)
Q Consensus 148 v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~ 227 (609)
|.+++|||+..+ ++|||.|+++++||..++..++.|.||.++|++++|||+|++|++|+.|+.|.+||...++.+..+
T Consensus 538 V~cv~FHPNs~Y-~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l- 615 (707)
T KOG0263|consen 538 VDCVSFHPNSNY-VATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL- 615 (707)
T ss_pred cceEEECCcccc-cccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh-
Confidence 999999999986 999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred cCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283 228 PEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS 263 (609)
Q Consensus 228 ~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~ 263 (609)
.+|++.|+++.||.||..|+++|.|.+|++||+.
T Consensus 616 --~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 616 --KGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred --hcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 4899999999999999999999999999999985
No 33
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.4e-34 Score=280.99 Aligned_cols=272 Identities=29% Similarity=0.504 Sum_probs=216.2
Q ss_pred CCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCe
Q 007283 58 YPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTN 137 (609)
Q Consensus 58 ~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~ 137 (609)
..++|+.||+|+++||.|-.|-.|++|.+.+.+ ++ .++.... +.. +| +-.++- ..+..+-+....
T Consensus 379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~-~lk~~~~-l~~----~d-----~~sad~---~~~~~D~~~~~~ 443 (707)
T KOG0263|consen 379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LK-KLKDASD-LSN----ID-----TESADV---DVDMLDDDSSGT 443 (707)
T ss_pred CcceeEeecCCcchhhccccccEEEEEecchhh-hc-cccchhh-hcc----cc-----ccccch---hhhhccccCCce
Confidence 459999999999999999999999999987643 11 1111100 000 00 000000 011223333445
Q ss_pred eEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 007283 138 VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDG 217 (609)
Q Consensus 138 ~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~ 217 (609)
..++-||+++|+.+.|+|+..+ +++|+.|.++++|...++.+...++||..+|.++.|+|-|-++|||+.|++.++|..
T Consensus 444 ~~~L~GH~GPVyg~sFsPd~rf-LlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 444 SRTLYGHSGPVYGCSFSPDRRF-LLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST 522 (707)
T ss_pred eEEeecCCCceeeeeecccccc-eeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence 5668899999999999999986 999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEE
Q 007283 218 KTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLV 297 (609)
Q Consensus 218 ~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (609)
...+.+..+ .+|-+.|.|+.|+|+..|+++||.|.++|+||+..+.
T Consensus 523 d~~~PlRif---aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~------------------------------- 568 (707)
T KOG0263|consen 523 DHNKPLRIF---AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN------------------------------- 568 (707)
T ss_pred ccCCchhhh---cccccccceEEECCcccccccCCCCceEEEEEcCCCc-------------------------------
Confidence 765554443 5899999999999999999999999999999975210
Q ss_pred EEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeC
Q 007283 298 IVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIE 377 (609)
Q Consensus 298 ~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (609)
.+|+| .||
T Consensus 569 ------~VRiF------------~GH------------------------------------------------------ 576 (707)
T KOG0263|consen 569 ------SVRIF------------TGH------------------------------------------------------ 576 (707)
T ss_pred ------EEEEe------------cCC------------------------------------------------------
Confidence 01111 112
Q ss_pred CcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcC
Q 007283 378 EEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAP 457 (609)
Q Consensus 378 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 457 (609)
+.+|.++++||
T Consensus 577 ---------------------------------------------------------------------~~~V~al~~Sp 587 (707)
T KOG0263|consen 577 ---------------------------------------------------------------------KGPVTALAFSP 587 (707)
T ss_pred ---------------------------------------------------------------------CCceEEEEEcC
Confidence 13477888999
Q ss_pred CCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccC
Q 007283 458 DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVS 522 (609)
Q Consensus 458 ~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~ 522 (609)
+|++||+|+.||.|.+||+.++.+ ...+.+|++.|.+|.||.||..||+|+.|.+|++||+..
T Consensus 588 ~Gr~LaSg~ed~~I~iWDl~~~~~--v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 588 CGRYLASGDEDGLIKIWDLANGSL--VKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CCceEeecccCCcEEEEEcCCCcc--hhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 999999999999999999988765 356789999999999999999999999999999999754
No 34
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.3e-31 Score=259.71 Aligned_cols=524 Identities=16% Similarity=0.194 Sum_probs=321.4
Q ss_pred cEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeE
Q 007283 60 ATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVG 139 (609)
Q Consensus 60 v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 139 (609)
-..++..|..-++|-- +.-+|-|++....+. .+.+..+..++++++|||+|+++++.-.|. ..-+++|.+.....++
T Consensus 40 ~~gLa~~p~Sgl~aYp-AGCvVVlfn~~~~tQ-~hlvnssRk~~t~vAfS~~GryvatGEcG~-~pa~kVw~la~h~vVA 116 (1080)
T KOG1408|consen 40 ANGLASVPCSGLCAYP-AGCVVVLFNVDSCTQ-SHLVNSSRKPLTCVAFSQNGRYVATGECGR-TPASKVWSLAFHGVVA 116 (1080)
T ss_pred CCcccccccccceeec-cCcEEEEEcccccch-hheecccCcceeEEEEcCCCcEEEecccCC-Cccceeeeeccccchh
Confidence 3456667766666632 235788998865431 122345567899999999999888754333 2356788887777889
Q ss_pred EEecCCccEEEEEEeeCCCeEEEEecCCC--eEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 007283 140 EFDGHSRRVLSCAFKPSRPFRIATCGEDF--LVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDG 217 (609)
Q Consensus 140 ~~~~h~~~v~~~~~~p~~~~~i~t~~~d~--~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~ 217 (609)
+|..|...|++++|+|.+.+ +++.|..+ .+.+||.... ....-..-...|..++|+.||.+++|++ +..|++|.+
T Consensus 117 EfvdHKY~vtcvaFsp~~ky-vvSVGsQHDMIVnv~dWr~N-~~~asnkiss~Vsav~fsEdgSYfvT~g-nrHvk~wyl 193 (1080)
T KOG1408|consen 117 EFVDHKYNVTCVAFSPGNKY-VVSVGSQHDMIVNVNDWRVN-SSGASNKISSVVSAVAFSEDGSYFVTSG-NRHVKLWYL 193 (1080)
T ss_pred hhhhccccceeeeecCCCcE-EEeeccccceEEEhhhhhhc-ccccccccceeEEEEEEccCCceeeeee-eeeEEEEEe
Confidence 99999999999999999987 55555554 4566653311 0001112235688999999999999876 567899976
Q ss_pred CCCccccccCcC----------------------------------CCC-----------------ccceEEEEECCCCC
Q 007283 218 KTADKIGELSPE----------------------------------DGH-----------------KGSVYAVSWSPDGK 246 (609)
Q Consensus 218 ~~~~~~~~~~~~----------------------------------~~h-----------------~~~V~~l~~spd~~ 246 (609)
+.+++...-.+. .|| +-..+|++. ..+
T Consensus 194 ~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV--s~r 271 (1080)
T KOG1408|consen 194 QIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV--SSR 271 (1080)
T ss_pred eccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee--ecc
Confidence 655421100000 011 001123333 467
Q ss_pred eEEEEeCCCcEEEeecccCCCCceEEEec--------------------cCCCCCccceEEEEEEc--CCeEEEEEcCCc
Q 007283 247 QVLTASADKSAKVWDISEDNHGKLKKTLT--------------------PSGSGGVDDMLVGCLWQ--NDFLVIVSLGGT 304 (609)
Q Consensus 247 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~ 304 (609)
+|++|+.+|.||+|+...- ....++. ...++.+.+ .+++.|+ .+.+.++.+|..
T Consensus 272 ~I~cgCa~g~vrlFnp~tL---~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD-~IA~~Fdet~~klscVYndhS 347 (1080)
T KOG1408|consen 272 LIACGCAKGMVRLFNPETL---DYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPD-AIACQFDETTDKLSCVYNDHS 347 (1080)
T ss_pred eEEEeeccceeeecCcchh---hhccccccccccccchhhcccccccccccCcccCCc-eeEEEecCCCceEEEEEcCce
Confidence 9999999999999986531 1111110 000111112 2344444 668899999999
Q ss_pred EEEEeCCCCCCCc--eeeeCCCCCeEEEEEecC----------CCCEEEEEecCCcEEEEecCccccceecccc---ccc
Q 007283 305 ISIFSANDLEKSP--LQLSGHMKNVTALTVLNI----------DPKVILSSSYDGLIVKWIQGIGYGGKLQRKE---NSQ 369 (609)
Q Consensus 305 i~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~----------~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~---~~~ 369 (609)
+++|++++..+.- ..+--|...|+.+...+. -+.-++||+.|++||+|++...........+ ...
T Consensus 348 lYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l 427 (1080)
T KOG1408|consen 348 LYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANL 427 (1080)
T ss_pred EEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhh
Confidence 9999998765433 234458887777654421 1235899999999999988764332221110 000
Q ss_pred eeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecc--cEEEee--CCeeeEEec
Q 007283 370 IKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDS--GVVLLR--GAEVVSTIN 445 (609)
Q Consensus 370 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~ 445 (609)
++.+..++..- -+..-....-........+.......+++.++. -.+.+++. +++++. ..+....+.
T Consensus 428 ~ki~y~d~~~q-------~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g--qhLAsGDr~GnlrVy~Lq~l~~~~~~e 498 (1080)
T KOG1408|consen 428 SKIPYEDSTQQ-------IMHDASAGIFDKALVSTCDSRFGFRALAVSPDG--QHLASGDRGGNLRVYDLQELEYTCFME 498 (1080)
T ss_pred hcCccccCchh-------hhhhccCCcccccchhhcCcccceEEEEECCCc--ceecccCccCceEEEEehhhhhhhhee
Confidence 00000000000 000000000000000000000111222222222 22222222 233322 111222222
Q ss_pred -cCCceeEEEEcC---CCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCC------------------
Q 007283 446 -LRFPVTASAIAP---DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDV------------------ 503 (609)
Q Consensus 446 -~~~~~~~~~~sp---~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~------------------ 503 (609)
+..++.|+.++. ..++||+++.|+.|++||+..+. ...+++.+|...|++|.|.-+|
T Consensus 499 AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny-~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~ 577 (1080)
T KOG1408|consen 499 AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY-DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRV 577 (1080)
T ss_pred cccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc-chhhhhcccccceeEEEEeecCCceEEEeccCchhhheeh
Confidence 445677887763 34679999999999999997553 2345677777777777665443
Q ss_pred -------------------------------CEEEEEeCCCeEEEEEccCCceEEeeec---CCCCceEEEEECCCCcEE
Q 007283 504 -------------------------------SMFASGDVNREAIVWDRVSREVKLKNML---YHTARINCLAWSPNNSMV 549 (609)
Q Consensus 504 -------------------------------~~l~s~s~d~~v~iwd~~~~~~~~~~~~---~h~~~i~~l~~s~d~~~l 549 (609)
++++++++|+.|+|||++++++. +.++ .|.+..-.+...|.|.||
T Consensus 578 ~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~-k~FKgs~~~eG~lIKv~lDPSgiY~ 656 (1080)
T KOG1408|consen 578 NQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV-KSFKGSRDHEGDLIKVILDPSGIYL 656 (1080)
T ss_pred hccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccccee-eeecccccCCCceEEEEECCCccEE
Confidence 46889999999999999887653 3343 466778889999999999
Q ss_pred EEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEccC
Q 007283 550 ATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRLTP 608 (609)
Q Consensus 550 ~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~~~ 608 (609)
|++..|+++.++|.-.+ +.+....||+..|+.+.|+ |-++|||++.||+|.+|.+..
T Consensus 657 atScsdktl~~~Df~sg--EcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 657 ATSCSDKTLCFVDFVSG--ECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEeecCCceEEEEeccc--hhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 99999999999998753 4455556899999999999 778999999999999999853
No 35
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=6.6e-33 Score=242.83 Aligned_cols=286 Identities=24% Similarity=0.381 Sum_probs=227.6
Q ss_pred eccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-ccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEee
Q 007283 183 SHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTA-DKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWD 261 (609)
Q Consensus 183 ~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd 261 (609)
.+.||++.|+.+.|+|+|..||+|+.|..|.+|++... +....+ ++|++.|..+.|.+|+..++++|.|.+++.||
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~l---kgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVL---KGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeee---ccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 46789999999999999999999999999999985432 222233 59999999999999999999999999999999
Q ss_pred cccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEE
Q 007283 262 ISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVIL 341 (609)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 341 (609)
+.. ++.. ..+++|.+-|..+.-...++.++.
T Consensus 119 ~~t---G~~~----------------------------------------------rk~k~h~~~vNs~~p~rrg~~lv~ 149 (338)
T KOG0265|consen 119 AET---GKRI----------------------------------------------RKHKGHTSFVNSLDPSRRGPQLVC 149 (338)
T ss_pred ccc---ceee----------------------------------------------ehhccccceeeecCccccCCeEEE
Confidence 873 2221 123456666666665556668899
Q ss_pred EEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCC
Q 007283 342 SSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYP 421 (609)
Q Consensus 342 t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (609)
|++.|+++++||......
T Consensus 150 SgsdD~t~kl~D~R~k~~-------------------------------------------------------------- 167 (338)
T KOG0265|consen 150 SGSDDGTLKLWDIRKKEA-------------------------------------------------------------- 167 (338)
T ss_pred ecCCCceEEEEeecccch--------------------------------------------------------------
Confidence 999999999997642110
Q ss_pred cEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECC
Q 007283 422 ELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSP 501 (609)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~ 501 (609)
+..++.++++++++|.-++..+++|+=|+.|++||++.+.. ..++++|..+|+.++.+|
T Consensus 168 -------------------~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~--~~~lsGh~DtIt~lsls~ 226 (338)
T KOG0265|consen 168 -------------------IKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG--LYTLSGHADTITGLSLSR 226 (338)
T ss_pred -------------------hhccccceeEEEEEecccccceeeccccCceeeeccccCcc--eEEeecccCceeeEEecc
Confidence 01111234578888988899999999999999999976654 468899999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccC---CceEEeeecCCCC----ceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEe
Q 007283 502 DVSMFASGDVNREAIVWDRVS---REVKLKNMLYHTA----RINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIK 574 (609)
Q Consensus 502 ~~~~l~s~s~d~~v~iwd~~~---~~~~~~~~~~h~~----~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~ 574 (609)
+|.++.+-+.|.++++||+.. .+..++...+|.. ....++|||+++.+..|+.|+.+.+||.... ..+..+
T Consensus 227 ~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r--~~lykl 304 (338)
T KOG0265|consen 227 YGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR--RILYKL 304 (338)
T ss_pred CCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc--cEEEEc
Confidence 999999999999999999754 2233444444433 2567899999999999999999999997532 345667
Q ss_pred ccccCCeEEEEEc-CCCeEEEEeCCCcEEEEE
Q 007283 575 GAHLGGVYGLAFT-DEHSVVSSGEDACVRVWR 605 (609)
Q Consensus 575 ~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~ 605 (609)
.||.+.|.+++|. .+..|.++|.|++|.+=.
T Consensus 305 pGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 305 PGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred CCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 8999999999999 667889999999998643
No 36
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.4e-34 Score=259.04 Aligned_cols=289 Identities=26% Similarity=0.353 Sum_probs=227.2
Q ss_pred ccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCc--eeeEEEeecccceeEEEECCCCCEEEEEECCCCcceE
Q 007283 50 VSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDH--VLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLV 127 (609)
Q Consensus 50 ~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~--~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~ 127 (609)
.+++..|++.|..+.|||+|+||||++.|.|..+|++.... .+..++.+|..+|..+.||||.++|++||.+. .+
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e---~~ 293 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE---VL 293 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchH---he
Confidence 35678999999999999999999999999999999987654 24567889999999999999999999998655 35
Q ss_pred EEEEcCCCCeeEEEe-cCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCc-ccceEEEEEcCCCCEEEE
Q 007283 128 RAFMWDSGTNVGEFD-GHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGH-SNFVNCVRFSPDGSKFIS 205 (609)
Q Consensus 128 ~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~s 205 (609)
.+|+.+++.....+. +|...+.+|+|-||+. ++++|+.|+.+..|+..-. ......+- ...|.+++.++||+.+++
T Consensus 294 ~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~vl~ 371 (519)
T KOG0293|consen 294 SLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKYVLL 371 (519)
T ss_pred eeccCCcchhhhhcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCCcEEEE
Confidence 667777777766554 4567899999999996 6999999999999985421 11122222 245999999999999999
Q ss_pred EeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccce
Q 007283 206 VSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDM 285 (609)
Q Consensus 206 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 285 (609)
.+.|..|++++.++........ ....|++.+.|.|++++++.-.+..+++||+.+ .++...+..... ...
T Consensus 372 v~~d~~i~l~~~e~~~dr~lis----e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e---~~lv~kY~Ghkq---~~f 441 (519)
T KOG0293|consen 372 VTVDKKIRLYNREARVDRGLIS----EEQPITSFSISKDGKLALVNLQDQEIHLWDLEE---NKLVRKYFGHKQ---GHF 441 (519)
T ss_pred Eecccceeeechhhhhhhcccc----ccCceeEEEEcCCCcEEEEEcccCeeEEeecch---hhHHHHhhcccc---cce
Confidence 9999999999987665544332 235799999999999999999999999999973 222222211111 112
Q ss_pred EEEEEEc---CCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEec
Q 007283 286 LVGCLWQ---NDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQ 354 (609)
Q Consensus 286 ~~~~~~~---~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~ 354 (609)
++..+|. ..++++|+.|+.|++|.-.. ......+.||.+.|.++++++.++.++|++|+||+||+|-.
T Consensus 442 iIrSCFgg~~~~fiaSGSED~kvyIWhr~s-gkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 442 IIRSCFGGGNDKFIASGSEDSKVYIWHRIS-GKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred EEEeccCCCCcceEEecCCCceEEEEEccC-CceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 2333332 35889999999999998543 45567899999999999999999999999999999999944
No 37
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.7e-32 Score=254.06 Aligned_cols=334 Identities=20% Similarity=0.330 Sum_probs=264.6
Q ss_pred cCCCCcEEEEECCCCC-EEEEEeCCCcEEEEcCCCC------c-eeeEEEe------ecccceeEEEECCCCCEEEEEEC
Q 007283 55 EHAYPATVARFSPNGE-WIASADVSGTVRIWGAHND------H-VLKKEFR------VLSGRIDDLQWSPDGLRIVACGD 120 (609)
Q Consensus 55 ~h~~~v~~~~~sp~g~-~las~~~d~~i~vWd~~~~------~-~~~~~~~------~~~~~v~~~~~spdg~~l~~~~~ 120 (609)
.|+.+|.+.+|+|-.. ++|+++.|-+.|+|++... + .+++.++ ..+..|++++|+.||..|++...
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 4999999999999877 8999999999999998741 1 1221111 11357999999999998888654
Q ss_pred CCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCC
Q 007283 121 GKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDG 200 (609)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg 200 (609)
+. .+|+|.- .+..+.++..|.++|.++.|...|.+ |++++.|+++.+||..++.....+.-|..+...+.|-.+.
T Consensus 256 ~G---~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~y-ilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~ 330 (524)
T KOG0273|consen 256 DG---EARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTY-ILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND 330 (524)
T ss_pred Cc---EEEEEec-CchhhhhhhccCCceEEEEEcCCCCE-EEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCc
Confidence 33 3444432 34556678899999999999999986 9999999999999999888888888888876778886654
Q ss_pred CEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCC
Q 007283 201 SKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSG 280 (609)
Q Consensus 201 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 280 (609)
.+++.+.|+.|.++-+.....+.++. +|.+.|.++.|.|.|.+|+++|.|++++||.+....
T Consensus 331 -~F~ts~td~~i~V~kv~~~~P~~t~~---GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~-------------- 392 (524)
T KOG0273|consen 331 -EFATSSTDGCIHVCKVGEDRPVKTFI---GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN-------------- 392 (524)
T ss_pred -eEeecCCCceEEEEEecCCCcceeee---cccCceEEEEECCCCceEEEecCCCeeEeeecCCCc--------------
Confidence 58999999999999887777676663 799999999999999999999999999999864210
Q ss_pred CccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccc
Q 007283 281 GVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGG 360 (609)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~ 360 (609)
....+.+|.+.|+.+.+++.++- .|
T Consensus 393 -----------------------------------~~~~l~~Hskei~t~~wsp~g~v------------~~-------- 417 (524)
T KOG0273|consen 393 -----------------------------------SVHDLQAHSKEIYTIKWSPTGPV------------TS-------- 417 (524)
T ss_pred -----------------------------------chhhhhhhccceeeEeecCCCCc------------cC--------
Confidence 11235678888877776543210 00
Q ss_pred eeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCee
Q 007283 361 KLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEV 440 (609)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (609)
T Consensus 418 -------------------------------------------------------------------------------- 417 (524)
T KOG0273|consen 418 -------------------------------------------------------------------------------- 417 (524)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEc
Q 007283 441 VSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDR 520 (609)
Q Consensus 441 ~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~ 520 (609)
-.-.+..+++++.|++|++||+..+.. ..++.+|..+|.+|+|||+|+++|+|+.|+-|.+|+.
T Consensus 418 --------------n~~~~~~l~sas~dstV~lwdv~~gv~--i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 418 --------------NPNMNLMLASASFDSTVKLWDVESGVP--IHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWST 481 (524)
T ss_pred --------------CCcCCceEEEeecCCeEEEEEccCCce--eEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccc
Confidence 001345588889999999999987765 4678899999999999999999999999999999998
Q ss_pred cCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcC
Q 007283 521 VSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEID 564 (609)
Q Consensus 521 ~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~ 564 (609)
..++.. + ...-+..|..|+|+.+|.+|..+-.|+.+.|-|+.
T Consensus 482 ~~~~l~-~-s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 482 KTGKLV-K-SYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cchhee-E-eecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 776542 2 23456679999999999999999999999998763
No 38
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.3e-32 Score=240.95 Aligned_cols=289 Identities=21% Similarity=0.311 Sum_probs=239.6
Q ss_pred cccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEc
Q 007283 53 YGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMW 132 (609)
Q Consensus 53 ~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 132 (609)
+.||++.|+.+.|+|+|.++|||+.|..|-+|.+.....-...+.+|++.|..+.|.+|+..++++|.++ .++.|+-
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk---~v~~wD~ 119 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDK---TVRGWDA 119 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCc---eEEEEec
Confidence 5799999999999999999999999999999997654433345679999999999999999999999766 4677888
Q ss_pred CCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcE
Q 007283 133 DSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKG 212 (609)
Q Consensus 133 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i 212 (609)
++++....+++|.+.|.++.-..-|+..+.+++.|+++++||.+.......+. .+.+++++.|..++..+.+|+-|+.|
T Consensus 120 ~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~i 198 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDI 198 (338)
T ss_pred ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCce
Confidence 88999999999999999999666677889999999999999998766655543 35679999999999999999999999
Q ss_pred EEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCc-eEEEeccCCCCCccceEEEEEE
Q 007283 213 IIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGK-LKKTLTPSGSGGVDDMLVGCLW 291 (609)
Q Consensus 213 ~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 291 (609)
++||++..+....+ .||...|+.+..+|+|.++.+-+.|.++++||++.-.+.. .++.+.. ....++.....|.|
T Consensus 199 kvWd~r~~d~~~~l---sGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g-~~hnfeknlL~csw 274 (338)
T KOG0265|consen 199 KVWDLRKNDGLYTL---SGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQG-HIHNFEKNLLKCSW 274 (338)
T ss_pred eeeccccCcceEEe---ecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeec-chhhhhhhcceeec
Confidence 99999999888776 4999999999999999999999999999999997543332 2443321 22233445567778
Q ss_pred cCC--eEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEE
Q 007283 292 QND--FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVK 351 (609)
Q Consensus 292 ~~~--~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~ 351 (609)
+++ .+-+++.|..+++|+... ......++||...|.+++|++.. .++.+++.|.+|.+
T Consensus 275 sp~~~~i~ags~dr~vyvwd~~~-r~~lyklpGh~gsvn~~~Fhp~e-~iils~~sdk~i~l 334 (338)
T KOG0265|consen 275 SPNGTKITAGSADRFVYVWDTTS-RRILYKLPGHYGSVNEVDFHPTE-PIILSCSSDKTIYL 334 (338)
T ss_pred cCCCCccccccccceEEEeeccc-ccEEEEcCCcceeEEEeeecCCC-cEEEEeccCceeEe
Confidence 744 667788899999998643 23445689999999999999754 58999999999875
No 39
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.4e-34 Score=256.14 Aligned_cols=275 Identities=20% Similarity=0.389 Sum_probs=217.1
Q ss_pred CCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccc
Q 007283 144 HSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKI 223 (609)
Q Consensus 144 h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~ 223 (609)
....|+++.+..+ .+++|..|.+|++||.....+...+.||.+.|.|+.|. .+.|++|+.|.+|++||+++++.+
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchh
Confidence 3567999988543 49999999999999999999999999999999999994 458999999999999999999998
Q ss_pred cccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCC
Q 007283 224 GELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGG 303 (609)
Q Consensus 224 ~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 303 (609)
.++. +|...|..+.|+ +.+++++|.|.++++||+......
T Consensus 271 ~tli---hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~i----------------------------------- 310 (499)
T KOG0281|consen 271 NTLI---HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDI----------------------------------- 310 (499)
T ss_pred hHHh---hhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHH-----------------------------------
Confidence 8874 799999999996 468999999999999998531100
Q ss_pred cEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEE
Q 007283 304 TISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTS 383 (609)
Q Consensus 304 ~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (609)
.....+.||...|..+.|
T Consensus 311 -----------t~rrVLvGHrAaVNvVdf--------------------------------------------------- 328 (499)
T KOG0281|consen 311 -----------TLRRVLVGHRAAVNVVDF--------------------------------------------------- 328 (499)
T ss_pred -----------HHHHHHhhhhhheeeecc---------------------------------------------------
Confidence 001234566555544443
Q ss_pred eccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEE
Q 007283 384 GFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAI 463 (609)
Q Consensus 384 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~ 463 (609)
|.++++
T Consensus 329 --------------------------------------------------------------------------d~kyIV 334 (499)
T KOG0281|consen 329 --------------------------------------------------------------------------DDKYIV 334 (499)
T ss_pred --------------------------------------------------------------------------ccceEE
Confidence 234555
Q ss_pred EEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEEC
Q 007283 464 IGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWS 543 (609)
Q Consensus 464 ~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s 543 (609)
++|.|.+|++|++.+..+ ..++.+|+..|.|+.+ .|++++|||.|.+|++||++.+.. +..+.+|..-|.|+.|
T Consensus 335 sASgDRTikvW~~st~ef--vRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~c-LRvLeGHEeLvRciRF- 408 (499)
T KOG0281|consen 335 SASGDRTIKVWSTSTCEF--VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGAC-LRVLEGHEELVRCIRF- 408 (499)
T ss_pred EecCCceEEEEeccceee--ehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHH-HHHHhchHHhhhheee-
Confidence 666666666666655444 4567889999999877 789999999999999999887654 4567799999999999
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCCCCc-------ceeEeccccCCeEEEEEcCCCeEEEEeCCCcEEEEEcc
Q 007283 544 PNNSMVATGSLDTCVIIYEIDKPASS-------RMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRLT 607 (609)
Q Consensus 544 ~d~~~l~s~s~D~~v~vw~~~~~~~~-------~~~~~~~h~~~v~~~~~s~~~~l~s~s~D~~i~~W~~~ 607 (609)
|.+.+++|..||+|+|||+...... .+..+..|+++|..+.|.+ ..|++++.|.+|.+||+.
T Consensus 409 -d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~-fqIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 409 -DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE-FQIISSSHDDTILIWDFL 477 (499)
T ss_pred -cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc-eEEEeccCCCeEEEEEcC
Confidence 6888999999999999998642211 1223456999999999964 568999999999999983
No 40
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.7e-32 Score=268.17 Aligned_cols=379 Identities=20% Similarity=0.339 Sum_probs=275.2
Q ss_pred EeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeC
Q 007283 96 FRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEG 175 (609)
Q Consensus 96 ~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~ 175 (609)
|...+..|..++|+|..-++++.=- ...+++|++..+.++..|.+|.++|..++|||+++. |++||.|++|++|+.
T Consensus 5 fEskSsRvKglsFHP~rPwILtslH---sG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qpl-FVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLH---SGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPL-FVSGGDDYKIKVWNY 80 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeec---CceeeeehhhhhhHHhhhhccCCccceeeecCCCCe-EEecCCccEEEEEec
Confidence 3445667999999999988887542 236889999999999999999999999999999995 999999999999999
Q ss_pred CCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCC
Q 007283 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADK 255 (609)
Q Consensus 176 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~ 255 (609)
...++.+++.||.++|..+.|++.-.+|+++|+|.+|+||++++.+++..+ .||+.-|.|..|+|...+++|+|-|.
T Consensus 81 k~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavl---tGHnHYVMcAqFhptEDlIVSaSLDQ 157 (1202)
T KOG0292|consen 81 KTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVL---TGHNHYVMCAQFHPTEDLIVSASLDQ 157 (1202)
T ss_pred ccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEE---ecCceEEEeeccCCccceEEEecccc
Confidence 999999999999999999999999999999999999999999999999887 49999999999999999999999999
Q ss_pred cEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecC
Q 007283 256 SAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNI 335 (609)
Q Consensus 256 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 335 (609)
+||+||++. ..++...+. +.++.....--+.+ +.++.|.. ....+.||...|..++|++.
T Consensus 158 TVRVWDisG----LRkk~~~pg---~~e~~~~~~~~~~d--Lfg~~DaV-----------VK~VLEGHDRGVNwaAfhpT 217 (1202)
T KOG0292|consen 158 TVRVWDISG----LRKKNKAPG---SLEDQMRGQQGNSD--LFGQTDAV-----------VKHVLEGHDRGVNWAAFHPT 217 (1202)
T ss_pred eEEEEeecc----hhccCCCCC---Cchhhhhccccchh--hcCCcCee-----------eeeeecccccccceEEecCC
Confidence 999999863 222222111 11111110000000 11111111 11457899999999999864
Q ss_pred CCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeE
Q 007283 336 DPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLS 415 (609)
Q Consensus 336 ~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (609)
. .++++|++|+.|++|..+.. +.|-.+.
T Consensus 218 l-pliVSG~DDRqVKlWrmnet------------------------------KaWEvDt--------------------- 245 (1202)
T KOG0292|consen 218 L-PLIVSGADDRQVKLWRMNET------------------------------KAWEVDT--------------------- 245 (1202)
T ss_pred c-ceEEecCCcceeeEEEeccc------------------------------cceeehh---------------------
Confidence 3 48999999999999954311 1111110
Q ss_pred eeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceE
Q 007283 416 VALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVS 495 (609)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~ 495 (609)
...|...|+++-|+|...++++.+.|++||+||++.... .+++....+.-+
T Consensus 246 ---------------------------crgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~--v~tfrrendRFW 296 (1202)
T KOG0292|consen 246 ---------------------------CRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS--VQTFRRENDRFW 296 (1202)
T ss_pred ---------------------------hhcccCCcceEEecCccceeEecCCCccEEEEecccccc--eeeeeccCCeEE
Confidence 011224588999999999999999999999999986653 456666778899
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcc-eeEe
Q 007283 496 VIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSR-MTIK 574 (609)
Q Consensus 496 ~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~-~~~~ 574 (609)
+++..|...++|+| .|+-+.++-++... + +.+.+. +. |.-.- |..|+-+|+.+.+... +.+.
T Consensus 297 ~laahP~lNLfAAg-HDsGm~VFkleREr-----------p--a~~v~~-n~-LfYvk-d~~i~~~d~~t~~d~~v~~lr 359 (1202)
T KOG0292|consen 297 ILAAHPELNLFAAG-HDSGMIVFKLERER-----------P--AYAVNG-NG-LFYVK-DRFIRSYDLRTQKDTAVASLR 359 (1202)
T ss_pred EEEecCCcceeeee-cCCceEEEEEcccC-----------c--eEEEcC-CE-EEEEc-cceEEeeeccccccceeEecc
Confidence 99999999999876 66667777543221 1 234442 22 33333 8889999987643221 2222
Q ss_pred cc--ccCCeEEEEEcCC-C-eEEEEeCCC
Q 007283 575 GA--HLGGVYGLAFTDE-H-SVVSSGEDA 599 (609)
Q Consensus 575 ~~--h~~~v~~~~~s~~-~-~l~s~s~D~ 599 (609)
.+ .-....++.|.+. + .++++..|+
T Consensus 360 ~~g~~~~~~~smsYNpae~~vlics~~~n 388 (1202)
T KOG0292|consen 360 RPGTLWQPPRSLSYNPAENAVLICSNLDN 388 (1202)
T ss_pred CCCcccCCcceeeeccccCeEEEEeccCC
Confidence 11 1245677888743 2 344444443
No 41
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.4e-30 Score=252.32 Aligned_cols=580 Identities=19% Similarity=0.269 Sum_probs=358.7
Q ss_pred cCceeEEeecCCCC---eEEEe-CCCEEEEEeCCCCccc--cccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCC
Q 007283 16 RGRGILISGHPKSN---SILYT-NGRSVIILDLSNPLQV--SIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHND 89 (609)
Q Consensus 16 ~~~~~~~~~~~~~~---~l~~~-~~~~~~i~~~~~~~~~--~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~ 89 (609)
.++...+..-|..+ .++.+ .++.+++|.+...... ..+.+|. +.+.+++..-........|+++.+||.+..
T Consensus 54 ~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~--~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~ 131 (764)
T KOG1063|consen 54 VARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHC--KECVCVVARSSVMTCKAADGTVSVWDKQQD 131 (764)
T ss_pred ccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcc--eeEEEEEeeeeEEEeeccCceEEEeecCCC
Confidence 33444555555544 34544 3578899999743332 3345666 445555544444444478999999999665
Q ss_pred ce-eeEEEeecccce--eEEEECC-CCCEEEEEECCCCcceEEEEEcCC--CCeeEEEecCCccEEEEEEeeCC--CeEE
Q 007283 90 HV-LKKEFRVLSGRI--DDLQWSP-DGLRIVACGDGKGKSLVRAFMWDS--GTNVGEFDGHSRRVLSCAFKPSR--PFRI 161 (609)
Q Consensus 90 ~~-~~~~~~~~~~~v--~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~p~~--~~~i 161 (609)
+. +...++...+.+ .++++.| .+..|+++|..+. .+.++--.. -+...++.||.+-|.+++|...+ ...+
T Consensus 132 e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~--~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~l 209 (764)
T KOG1063|consen 132 EVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKF--VVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLL 209 (764)
T ss_pred ceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcce--EEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEE
Confidence 52 333444444443 4556667 5678888875432 233322221 14567889999999999997543 5779
Q ss_pred EEecCCCeEEEEeCCCCc-------------------------ee------eeccCcccceEEEEEcCCCCEEEEEeCCC
Q 007283 162 ATCGEDFLVNFYEGPPFK-------------------------FK------LSHRGHSNFVNCVRFSPDGSKFISVSSDK 210 (609)
Q Consensus 162 ~t~~~d~~i~~~~~~~~~-------------------------~~------~~~~~h~~~v~~l~~s~dg~~l~s~~~d~ 210 (609)
|++++|..|++|.+.... .. ..+.||.+.|.++.|+|++..|++++.|+
T Consensus 210 aS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDk 289 (764)
T KOG1063|consen 210 ASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADK 289 (764)
T ss_pred EecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCc
Confidence 999999999999532111 00 11459999999999999999999999999
Q ss_pred cEEEEeCCCCcccc----ccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceE
Q 007283 211 KGIIYDGKTADKIG----ELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDML 286 (609)
Q Consensus 211 ~i~iwd~~~~~~~~----~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (609)
++++|.+.+..-+. ++....|..+...+..|+|++..+++-+.-|-.++|.... .....+.. .. .+..+.+
T Consensus 290 smiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d--~~~w~~~~--~i-SGH~~~V 364 (764)
T KOG1063|consen 290 SMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKD--KTFWTQEP--VI-SGHVDGV 364 (764)
T ss_pred ceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccC--ccceeecc--cc-ccccccc
Confidence 99999876543221 2222234456788999999999999999999999998321 12111111 11 1122233
Q ss_pred EEEEEc--CCeEEEEEcCCcEEEEeCCCCCC---CceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccce
Q 007283 287 VGCLWQ--NDFLVIVSLGGTISIFSANDLEK---SPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGK 361 (609)
Q Consensus 287 ~~~~~~--~~~~~~~~~~g~i~~~~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~ 361 (609)
....|. ++++++++.|.+-|+|....... ....-+-|--..+++++.+. +..+++|.....+|++..-......
T Consensus 365 ~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~-~~~FVSgAdEKVlRvF~aPk~fv~~ 443 (764)
T KOG1063|consen 365 KDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE-DLQFVSGADEKVLRVFEAPKSFVKS 443 (764)
T ss_pred eeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC-CceeeecccceeeeeecCcHHHHHH
Confidence 445676 78999999999999997542111 11123456668888888764 4689999999999999653322111
Q ss_pred ecc-------ccccc-----eeEeeeeCCcEE-----EEeccceEEEEec---------cCCcc----------cccccc
Q 007283 362 LQR-------KENSQ-----IKCFAAIEEEIV-----TSGFDNKIWRVSL---------QGDQC----------GYANSI 405 (609)
Q Consensus 362 ~~~-------~~~~~-----~~~~~~~~~~~~-----~~~~d~~i~~~~~---------~~~~~----------~~~~~~ 405 (609)
... ..... +..+..++..+. ++.. +..+.-.. .+... ...+.+
T Consensus 444 l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~-~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLY 522 (764)
T KOG1063|consen 444 LMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGE-AAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLY 522 (764)
T ss_pred HHHHhCccccCchhcccccccccccccCCCCcccccccccc-cceeeecccccCchhccCCChHHHHHHhccchhhHHhc
Confidence 000 00000 000000000000 0000 00000000 00000 000111
Q ss_pred ccCCCCceeEeeccCCcEEEEEe------cccEEEeeCC--eeeEEe-ccCCceeEEEEcCCCCEEEEEeCCCcEEEEEe
Q 007283 406 DIGSQPKDLSVALHYPELVLVST------DSGVVLLRGA--EVVSTI-NLRFPVTASAIAPDGSEAIIGSQDGKLRVYSI 476 (609)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~--~~~~~~-~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~ 476 (609)
.++.+...+.+.+.+ ++++... ...+.+|... .....+ .|...|+-++|||||++|++.+.|+++.+|+.
T Consensus 523 GHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~ 601 (764)
T KOG1063|consen 523 GHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEV 601 (764)
T ss_pred cCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeee
Confidence 233344444433322 3333332 1235555422 112222 35677999999999999999999999999998
Q ss_pred cCCeeee--eEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCC--ceEEe-eecCCCCceEEEEECCC-----C
Q 007283 477 RGDTLTE--EAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSR--EVKLK-NMLYHTARINCLAWSPN-----N 546 (609)
Q Consensus 477 ~~~~~~~--~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~--~~~~~-~~~~h~~~i~~l~~s~d-----~ 546 (609)
+.+.... -...+.|+..|++.+|+|++.++|++|.|++|++|..... +...+ ....+...|++++|.|- +
T Consensus 602 ~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~ 681 (764)
T KOG1063|consen 602 QEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKG 681 (764)
T ss_pred ecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeecccccccc
Confidence 6543221 1236789999999999999999999999999999987654 21111 23458889999999873 2
Q ss_pred cEEEEEeCCCeEEEEEcCCCCCc----------ceeEeccccCCeEEEEEcCC-----------CeEEEEeCCCcEEEEE
Q 007283 547 SMVATGSLDTCVIIYEIDKPASS----------RMTIKGAHLGGVYGLAFTDE-----------HSVVSSGEDACVRVWR 605 (609)
Q Consensus 547 ~~l~s~s~D~~v~vw~~~~~~~~----------~~~~~~~h~~~v~~~~~s~~-----------~~l~s~s~D~~i~~W~ 605 (609)
..++.|-.-|.|.+|.......+ +..-..+|...|.-+.|++- ..|+++|.|.++++++
T Consensus 682 ~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~n 761 (764)
T KOG1063|consen 682 DVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFN 761 (764)
T ss_pred ceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEee
Confidence 36789999999999996521100 11123467888999999722 1379999999999999
Q ss_pred cc
Q 007283 606 LT 607 (609)
Q Consensus 606 ~~ 607 (609)
++
T Consensus 762 v~ 763 (764)
T KOG1063|consen 762 VD 763 (764)
T ss_pred cc
Confidence 85
No 42
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.1e-34 Score=258.60 Aligned_cols=240 Identities=27% Similarity=0.515 Sum_probs=201.6
Q ss_pred CCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCC-
Q 007283 57 AYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSG- 135 (609)
Q Consensus 57 ~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~- 135 (609)
+-+|..++|.|+|+.|++|+..|...||...+-. ....+..|..+|+++.||++|.++++...+ .+++ .|+.+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn-FEtilQaHDs~Vr~m~ws~~g~wmiSgD~g---G~iK--yWqpnm 169 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN-FETILQAHDSPVRTMKWSHNGTWMISGDKG---GMIK--YWQPNM 169 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceee-HHHHhhhhcccceeEEEccCCCEEEEcCCC---ceEE--ecccch
Confidence 4579999999999999999999999999874311 112245789999999999999999985432 2444 45543
Q ss_pred CeeEEEecC-CccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEE
Q 007283 136 TNVGEFDGH-SRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII 214 (609)
Q Consensus 136 ~~~~~~~~h-~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~i 214 (609)
.++..+..| ...|.+++|+|++. .|++|+.|++|++||....+....+.||.-.|.|+.|+|.-.+|++||.|..|++
T Consensus 170 nnVk~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKl 248 (464)
T KOG0284|consen 170 NNVKIIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKL 248 (464)
T ss_pred hhhHHhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEe
Confidence 234445555 48999999999877 5999999999999998888888888999999999999999999999999999999
Q ss_pred EeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCC
Q 007283 215 YDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQND 294 (609)
Q Consensus 215 wd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (609)
||.+++.++.++. +|+..|..+.|.|++.+|+++|.|..++++|++. .+
T Consensus 249 WDprSg~cl~tlh---~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~---mk------------------------- 297 (464)
T KOG0284|consen 249 WDPRSGSCLATLH---GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT---MK------------------------- 297 (464)
T ss_pred ecCCCcchhhhhh---hccceEEEEEEcCCCCeeEEccCCceEEEEehhH---hH-------------------------
Confidence 9999999998874 7999999999999999999999999999999861 10
Q ss_pred eEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecC
Q 007283 295 FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQG 355 (609)
Q Consensus 295 ~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~ 355 (609)
....+.+|.+.|.++++++..+.++.+|+.||.|..|...
T Consensus 298 ---------------------El~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 298 ---------------------ELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred ---------------------HHHHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence 1123568999999999999888999999999999999654
No 43
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=4.2e-29 Score=233.39 Aligned_cols=477 Identities=18% Similarity=0.246 Sum_probs=322.3
Q ss_pred EEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCC--------eEEEEeCCC
Q 007283 106 LQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDF--------LVNFYEGPP 177 (609)
Q Consensus 106 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~--------~i~~~~~~~ 177 (609)
+-+-|-|+.+..+. .+..++.|+...+ .-+-+|...|.+++.||+.- ++++|-..+ .+++||..+
T Consensus 71 ly~lptgE~vyfvA-----~V~Vl~n~ee~~Q-r~y~GH~ddikc~~vHPdri-~vatGQ~ag~~g~~~~phvriWdsv~ 143 (626)
T KOG2106|consen 71 LYLLPTGELVYFVA-----AVGVLYNWEERSQ-RHYLGHNDDIKCMAVHPDRI-RVATGQGAGTSGRPLQPHVRIWDSVT 143 (626)
T ss_pred eEEccCccEEEEec-----cEEEEEeehhhhc-ccccCCCCceEEEeecCCce-eeccCcccccCCCcCCCeeeeccccc
Confidence 44556555443322 1344677755332 33679999999999999875 477663333 489999777
Q ss_pred CceeeeccCcccceEEEEEcCC--CCEEEEEe--CCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeC
Q 007283 178 FKFKLSHRGHSNFVNCVRFSPD--GSKFISVS--SDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA 253 (609)
Q Consensus 178 ~~~~~~~~~h~~~v~~l~~s~d--g~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~ 253 (609)
......+..-...|.|++|++- |..|+... .+..+-+||++.++.....+ ..+..|..+.|+|-+..|+....
T Consensus 144 L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk---~sne~v~~a~FHPtd~nliit~G 220 (626)
T KOG2106|consen 144 LSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVK---TSNEVVFLATFHPTDPNLIITCG 220 (626)
T ss_pred ceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcce---eccceEEEEEeccCCCcEEEEeC
Confidence 6666666666677999999975 55555543 34456789998887765553 45677899999997665555555
Q ss_pred CCcEEEeecccCCCCceEEEe-ccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEE
Q 007283 254 DKSAKVWDISEDNHGKLKKTL-TPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTV 332 (609)
Q Consensus 254 d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~ 332 (609)
.+++.+|+++.+. +.+.. ....... ......++-.+...+++..+|+|.+|..... ....+...|.+.|.+++.
T Consensus 221 k~H~~Fw~~~~~~---l~k~~~~fek~ek-k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~-~~~k~~~aH~ggv~~L~~ 295 (626)
T KOG2106|consen 221 KGHLYFWTLRGGS---LVKRQGIFEKREK-KFVLCVTFLENGDVITGDSGGNILIWSKGTN-RISKQVHAHDGGVFSLCM 295 (626)
T ss_pred CceEEEEEccCCc---eEEEeeccccccc-eEEEEEEEcCCCCEEeecCCceEEEEeCCCc-eEEeEeeecCCceEEEEE
Confidence 7899999987432 22221 1111111 1222222334678999999999999986433 333444589999999998
Q ss_pred ecCCCCEEEEEecCCcEEEEecCccccceecc-ccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCC
Q 007283 333 LNIDPKVILSSSYDGLIVKWIQGIGYGGKLQR-KENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQP 411 (609)
Q Consensus 333 ~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~ 411 (609)
... ..+++|+.|+.|..|+.+-........ .....++.++.....++.+...+.|..-.+++..... ..-++.+.
T Consensus 296 lr~--GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~--v~gh~del 371 (626)
T KOG2106|consen 296 LRD--GTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLT--VQGHGDEL 371 (626)
T ss_pred ecC--ccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEE--EEecccce
Confidence 743 567789999999999854332211111 1223455555555557777777777665555443210 00112223
Q ss_pred ceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCC
Q 007283 412 KDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHR 491 (609)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~ 491 (609)
..++..+..+.++..+-+..+.+|+.+.+........+..|++|+|.| .+|+|+..|...+.|.++..+.. +....
T Consensus 372 wgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~---~~~d~ 447 (626)
T KOG2106|consen 372 WGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT---IHTDN 447 (626)
T ss_pred eeEEcCCChhheeeccCcceEEEccCCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEE---EEecC
Confidence 333333444444555556678889888887777788899999999999 99999999999999998765533 22237
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeee-cCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcc
Q 007283 492 GAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNM-LYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSR 570 (609)
Q Consensus 492 ~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~ 570 (609)
.++++++|+|+|.++|.|+.|+.|++|.+.....++... +.|-..|+.++||+|+++|.+-+.|-.|..|.... ..+.
T Consensus 448 ~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~-~~~~ 526 (626)
T KOG2106|consen 448 EQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSE-CKQI 526 (626)
T ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcccc-Cccc
Confidence 899999999999999999999999999987665554432 23447899999999999999999999999994321 1011
Q ss_pred e-----------------eEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEc
Q 007283 571 M-----------------TIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRL 606 (609)
Q Consensus 571 ~-----------------~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~ 606 (609)
. ....+|..-|..++-+ .+.+++++-+.|.|+++..
T Consensus 527 ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~y 580 (626)
T KOG2106|consen 527 TSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSY 580 (626)
T ss_pred ceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEcc
Confidence 0 1123455566777766 6677888888999999865
No 44
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.8e-33 Score=254.76 Aligned_cols=287 Identities=24% Similarity=0.333 Sum_probs=234.9
Q ss_pred CccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccc
Q 007283 145 SRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIG 224 (609)
Q Consensus 145 ~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~ 224 (609)
.-.|..+.|.|+|. +|++|+..|...+|+...+..+..+..|..+|.++.|+++|.++++|..+|.|++|+..-.....
T Consensus 96 kc~V~~v~WtPeGR-RLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~ 174 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGR-RLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI 174 (464)
T ss_pred ccceeeEEEcCCCc-eeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH
Confidence 34688999999997 69999999999999998877777788999999999999999999999999999999876544322
Q ss_pred ccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCc
Q 007283 225 ELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGT 304 (609)
Q Consensus 225 ~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 304 (609)
+ ...|...|++++|+|....|+++|.||+|+|||....
T Consensus 175 -~--~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~--------------------------------------- 212 (464)
T KOG0284|consen 175 -I--QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP--------------------------------------- 212 (464)
T ss_pred -h--hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC---------------------------------------
Confidence 1 1245689999999999999999999999999996410
Q ss_pred EEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEe
Q 007283 305 ISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSG 384 (609)
Q Consensus 305 i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (609)
.....+.||--.|.++++++. ..+++++|.|+.|++||..++.....
T Consensus 213 ----------kee~vL~GHgwdVksvdWHP~-kgLiasgskDnlVKlWDprSg~cl~t---------------------- 259 (464)
T KOG0284|consen 213 ----------KEERVLRGHGWDVKSVDWHPT-KGLIASGSKDNLVKLWDPRSGSCLAT---------------------- 259 (464)
T ss_pred ----------chhheeccCCCCcceeccCCc-cceeEEccCCceeEeecCCCcchhhh----------------------
Confidence 011345789999999999865 36999999999999998754321110
Q ss_pred ccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEE
Q 007283 385 FDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAII 464 (609)
Q Consensus 385 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~ 464 (609)
...++..|..+.|+|++.+|++
T Consensus 260 ----------------------------------------------------------lh~HKntVl~~~f~~n~N~Llt 281 (464)
T KOG0284|consen 260 ----------------------------------------------------------LHGHKNTVLAVKFNPNGNWLLT 281 (464)
T ss_pred ----------------------------------------------------------hhhccceEEEEEEcCCCCeeEE
Confidence 0012244778889999999999
Q ss_pred EeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCC-CEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEEC
Q 007283 465 GSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDV-SMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWS 543 (609)
Q Consensus 465 gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s 543 (609)
+|+|..+++||++ .+.+..++.+|+..|+++.|+|-. .+|.+|+.|+.+..|.+...+.......+|...|++++|+
T Consensus 282 ~skD~~~kv~DiR--~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~h 359 (464)
T KOG0284|consen 282 GSKDQSCKVFDIR--TMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYH 359 (464)
T ss_pred ccCCceEEEEehh--HhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeecc
Confidence 9999999999997 344556788999999999999975 6888999999999999764443333345799999999999
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCCC
Q 007283 544 PNNSMVATGSLDTCVIIYEIDKPA 567 (609)
Q Consensus 544 ~d~~~l~s~s~D~~v~vw~~~~~~ 567 (609)
|-|..|++|+.|.++++|.-.++.
T Consensus 360 PlGhil~tgsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 360 PLGHILATGSNDRTVRFWTRNRPG 383 (464)
T ss_pred ccceeEeecCCCcceeeeccCCCC
Confidence 999999999999999999866544
No 45
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=5e-32 Score=242.44 Aligned_cols=287 Identities=19% Similarity=0.267 Sum_probs=236.7
Q ss_pred cccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEE
Q 007283 51 SIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAF 130 (609)
Q Consensus 51 ~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~ 130 (609)
+++.||.+-|.|+++.|-.++++||++|++|+|||+.+++ ++..+++|..-|..+++|+---+|+++|+++ .++.|
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~-LkltltGhi~~vr~vavS~rHpYlFs~gedk---~VKCw 220 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ-LKLTLTGHIETVRGVAVSKRHPYLFSAGEDK---QVKCW 220 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe-EEEeecchhheeeeeeecccCceEEEecCCC---eeEEE
Confidence 3467999999999999999999999999999999999976 6678999999999999999999999999866 57888
Q ss_pred EcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCC
Q 007283 131 MWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDK 210 (609)
Q Consensus 131 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~ 210 (609)
+++.++.+..+-||-..|++++.+|... ++++||.|.++++||.++...+..+.||..+|..+.+.|-...+++|+.|+
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~ 299 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDS 299 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCc
Confidence 8888888888999999999999999987 699999999999999999999999999999999999999888899999999
Q ss_pred cEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEE-
Q 007283 211 KGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGC- 289 (609)
Q Consensus 211 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 289 (609)
+|++||...++...++. .|+..|.+++.+|....+|++|.| .|+-|++.. +..++.+... ..++-+.
T Consensus 300 tvrlWDl~agkt~~tlt---~hkksvral~lhP~e~~fASas~d-nik~w~~p~---g~f~~nlsgh-----~~iintl~ 367 (460)
T KOG0285|consen 300 TVRLWDLRAGKTMITLT---HHKKSVRALCLHPKENLFASASPD-NIKQWKLPE---GEFLQNLSGH-----NAIINTLS 367 (460)
T ss_pred eEEEeeeccCceeEeee---cccceeeEEecCCchhhhhccCCc-cceeccCCc---cchhhccccc-----cceeeeee
Confidence 99999999998777663 689999999999999999999988 589999863 3333332211 1122222
Q ss_pred EEcCCeEEEEEcCCcEEEEeCCCCCCCce----eeeC---CCCCeEEEEEecCCCCEEEEEecCCcEEEEecC
Q 007283 290 LWQNDFLVIVSLGGTISIFSANDLEKSPL----QLSG---HMKNVTALTVLNIDPKVILSSSYDGLIVKWIQG 355 (609)
Q Consensus 290 ~~~~~~~~~~~~~g~i~~~~~~~~~~~~~----~~~~---h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~ 355 (609)
..+++++++++..|.+..|+....-.... ..+| ....|.+.+|. ..+..++||..|.+|++|..+
T Consensus 368 ~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fD-ktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 368 VNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFD-KTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred eccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeec-ccCceEEeccCCcceEEEecc
Confidence 23467899999999999999765432211 1122 23356666654 455789999999999999654
No 46
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.1e-31 Score=240.34 Aligned_cols=290 Identities=23% Similarity=0.319 Sum_probs=239.7
Q ss_pred eEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 007283 138 VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDG 217 (609)
Q Consensus 138 ~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~ 217 (609)
...+.+|.+.|.++++.|.+.+ |++|+.|+++++||..++++..++.||...|..+++|+--.++.+++.|+.|+.||.
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~w-f~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEW-FATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred hhhhhhccceEEEEeeCCCcee-EEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 4467899999999999999876 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEE
Q 007283 218 KTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLV 297 (609)
Q Consensus 218 ~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (609)
+..+.|..+. ||-+.|++++.+|.-..|++++.|.++|+||++...
T Consensus 223 e~nkvIR~Yh---GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~------------------------------- 268 (460)
T KOG0285|consen 223 EYNKVIRHYH---GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA------------------------------- 268 (460)
T ss_pred hhhhhHHHhc---cccceeEEEeccccceeEEecCCcceEEEeeecccc-------------------------------
Confidence 9998887763 899999999999999999999999999999987310
Q ss_pred EEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeC
Q 007283 298 IVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIE 377 (609)
Q Consensus 298 ~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (609)
....+.||...|..+.+-+.+ ..++|||.|++|++||+..+...
T Consensus 269 ------------------~V~~l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt~----------------- 312 (460)
T KOG0285|consen 269 ------------------SVHVLSGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKTM----------------- 312 (460)
T ss_pred ------------------eEEEecCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCcee-----------------
Confidence 123567899999998876544 47899999999999986432100
Q ss_pred CcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcC
Q 007283 378 EEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAP 457 (609)
Q Consensus 378 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 457 (609)
....+++..+.+++++|
T Consensus 313 ---------------------------------------------------------------~tlt~hkksvral~lhP 329 (460)
T KOG0285|consen 313 ---------------------------------------------------------------ITLTHHKKSVRALCLHP 329 (460)
T ss_pred ---------------------------------------------------------------EeeecccceeeEEecCC
Confidence 00011223478889999
Q ss_pred CCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceE--Eeee-----
Q 007283 458 DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVK--LKNM----- 530 (609)
Q Consensus 458 ~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~--~~~~----- 530 (609)
....+|+++.|. |+-|++..+.+. ..+.+|.+.|++++.+.|| ++++|+..+.+.+||-.++... ....
T Consensus 330 ~e~~fASas~dn-ik~w~~p~g~f~--~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGS 405 (460)
T KOG0285|consen 330 KENLFASASPDN-IKQWKLPEGEFL--QNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGS 405 (460)
T ss_pred chhhhhccCCcc-ceeccCCccchh--hccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCc
Confidence 999999998875 899999877654 3488999999999998776 5677889999999997765321 1111
Q ss_pred cCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCC
Q 007283 531 LYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDK 565 (609)
Q Consensus 531 ~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~ 565 (609)
......|.+.+|...|..|+||..|++|++|.-+.
T Consensus 406 l~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 406 LESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred cccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 12346799999999999999999999999998654
No 47
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2e-31 Score=271.25 Aligned_cols=287 Identities=29% Similarity=0.421 Sum_probs=232.1
Q ss_pred CCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCc-eeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEc-C
Q 007283 56 HAYPATVARFSPNGEWIASADVSGTVRIWGAHNDH-VLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMW-D 133 (609)
Q Consensus 56 h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~-~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~-~ 133 (609)
|...|.++.|||+|+++++++.|+++++|+.++.+ .+...+.+|...|..++|+|||+++++++++. .+++|+. +
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~---tiriwd~~~ 234 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDK---TLRIWDLKD 234 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCc---eEEEeeccC
Confidence 36789999999999999999999999999996655 23345678999999999999999999988765 4677777 4
Q ss_pred CCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEE
Q 007283 134 SGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGI 213 (609)
Q Consensus 134 ~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~ 213 (609)
.+.++.++++|...|++++|+|++ ..+++|+.|++|++||.+++++...+.+|.+.|++++|+++|+.|++++.|+.++
T Consensus 235 ~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~ 313 (456)
T KOG0266|consen 235 DGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIR 313 (456)
T ss_pred CCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEE
Confidence 457899999999999999999999 5699999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCc--cccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEE--
Q 007283 214 IYDGKTAD--KIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGC-- 289 (609)
Q Consensus 214 iwd~~~~~--~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 289 (609)
+||..++. +...+....... .++++.|+|++.++++++.|+++++||+.. +.....+...... . ......
T Consensus 314 vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~---~~~~~~~~~~~~~-~-~~~~~~~~ 387 (456)
T KOG0266|consen 314 VWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRS---GKSVGTYTGHSNL-V-RCIFSPTL 387 (456)
T ss_pred EEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccC---CcceeeecccCCc-c-eeEecccc
Confidence 99999998 344443222222 699999999999999999999999999973 3444444332221 1 011111
Q ss_pred EEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCC-CCCeEEEEEecCCCCEEEEEe--cCCcEEEEec
Q 007283 290 LWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGH-MKNVTALTVLNIDPKVILSSS--YDGLIVKWIQ 354 (609)
Q Consensus 290 ~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~t~s--~dg~i~~W~~ 354 (609)
...+..+++++.|+.|++|+... ......+.+| ...+..+.++. ..+++++++ .|+.+++|..
T Consensus 388 ~~~~~~i~sg~~d~~v~~~~~~s-~~~~~~l~~h~~~~~~~~~~~~-~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 388 STGGKLIYSGSEDGSVYVWDSSS-GGILQRLEGHSKAAVSDLSSHP-TENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred cCCCCeEEEEeCCceEEEEeCCc-cchhhhhcCCCCCceeccccCC-CcCeeeecCcCCCceEEEecC
Confidence 12366899999999999999875 3344567889 77777777764 346888888 7999999943
No 48
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.3e-29 Score=250.47 Aligned_cols=457 Identities=19% Similarity=0.266 Sum_probs=330.7
Q ss_pred cCceeEEeecCCC--CeEEE-eCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCcee
Q 007283 16 RGRGILISGHPKS--NSILY-TNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVL 92 (609)
Q Consensus 16 ~~~~~~~~~~~~~--~~l~~-~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~ 92 (609)
.+..+..-.||.- |.|+- ...+.+.||++.+++.+..|.++...|+++.-+|-=..+|-|-.+|+|.|..+..++.+
T Consensus 158 ~~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil 237 (910)
T KOG1539|consen 158 EGDFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKIL 237 (910)
T ss_pred cCCceeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEE
Confidence 3444777789873 44444 45689999999999999999999999999999999899999999999999999988765
Q ss_pred eEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEE-ecCCccEEEEEEeeCCCeEEEEecCCCeEE
Q 007283 93 KKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEF-DGHSRRVLSCAFKPSRPFRIATCGEDFLVN 171 (609)
Q Consensus 93 ~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~ 171 (609)
. .|+...+.|+.++|.-||..++++|...+ .+-+|+++..+..... +.|.+.|..+.|-|..+ ++++.+.|..++
T Consensus 238 ~-sFk~d~g~VtslSFrtDG~p~las~~~~G--~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnSlk 313 (910)
T KOG1539|consen 238 M-SFKQDWGRVTSLSFRTDGNPLLASGRSNG--DMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP-VLVTAGADNSLK 313 (910)
T ss_pred E-EEEccccceeEEEeccCCCeeEEeccCCc--eEEEEEcCCCeeeeeeeccccCCcccceecCCCc-eEeeccCCCcee
Confidence 3 56665689999999999999999886544 3557777766655544 48989999999999887 599999999999
Q ss_pred EEeCCCC----ceeeeccCcccceEEEEEc-CCCCEEEEEeCCCcEEEEeCCCCcc---------------ccccCcCCC
Q 007283 172 FYEGPPF----KFKLSHRGHSNFVNCVRFS-PDGSKFISVSSDKKGIIYDGKTADK---------------IGELSPEDG 231 (609)
Q Consensus 172 ~~~~~~~----~~~~~~~~h~~~v~~l~~s-~dg~~l~s~~~d~~i~iwd~~~~~~---------------~~~~~~~~~ 231 (609)
+|-.+++ +..+.-.||..+..|+.|. .+|..+.+++.|++.+.++...... ........-
T Consensus 314 ~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~ 393 (910)
T KOG1539|consen 314 VWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKL 393 (910)
T ss_pred EEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhh
Confidence 8843322 2334446899999999998 6788999999999988876432111 111100000
Q ss_pred CccceEEEEECCC-----CCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEE
Q 007283 232 HKGSVYAVSWSPD-----GKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTIS 306 (609)
Q Consensus 232 h~~~V~~l~~spd-----~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~ 306 (609)
--.+|..++|... ...++..-.+...+.|+.+....|+..-..............++..+-+++.+.|...|.|-
T Consensus 394 k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id 473 (910)
T KOG1539|consen 394 KLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTID 473 (910)
T ss_pred cCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEE
Confidence 1135677777543 23444445578899999986555443211111111112222233344578899999999999
Q ss_pred EEeCCCCCCCce--eeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEe
Q 007283 307 IFSANDLEKSPL--QLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSG 384 (609)
Q Consensus 307 ~~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (609)
+|+.+..-.... .-+.|...|.++++.. .++.+++++.+|-++.|+.+.... +
T Consensus 474 ~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l----------~-------------- 528 (910)
T KOG1539|consen 474 RFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVL----------K-------------- 528 (910)
T ss_pred EEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCcce----------e--------------
Confidence 999875432211 2357999999999754 457899999999999997653210 0
Q ss_pred ccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEE
Q 007283 385 FDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAII 464 (609)
Q Consensus 385 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~ 464 (609)
..+....++.++..+-....+|+
T Consensus 529 ---------------------------------------------------------~~l~l~~~~~~iv~hr~s~l~a~ 551 (910)
T KOG1539|consen 529 ---------------------------------------------------------KSLRLGSSITGIVYHRVSDLLAI 551 (910)
T ss_pred ---------------------------------------------------------eeeccCCCcceeeeeehhhhhhh
Confidence 00001112233333334456788
Q ss_pred EeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECC
Q 007283 465 GSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSP 544 (609)
Q Consensus 465 gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~ 544 (609)
+..|-.|+++|+.+... ...+.+|.+.|++++|||||+.+++++.|++|++||+.+.... ....-...++.+.|||
T Consensus 552 ~~ddf~I~vvD~~t~kv--vR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI--D~~~vd~~~~sls~SP 627 (910)
T KOG1539|consen 552 ALDDFSIRVVDVVTRKV--VREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI--DGLLVDSPCTSLSFSP 627 (910)
T ss_pred hcCceeEEEEEchhhhh--hHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCccee--eeEecCCcceeeEECC
Confidence 88999999999876654 3567899999999999999999999999999999999877542 2334577899999999
Q ss_pred CCcEEEEEeCC-CeEEEEE
Q 007283 545 NNSMVATGSLD-TCVIIYE 562 (609)
Q Consensus 545 d~~~l~s~s~D-~~v~vw~ 562 (609)
+|.+|||...| .-|.+|.
T Consensus 628 ngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 628 NGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred CCCEEEEEEecCceEEEEE
Confidence 99999999999 6799996
No 49
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=8.5e-33 Score=257.18 Aligned_cols=295 Identities=16% Similarity=0.255 Sum_probs=242.0
Q ss_pred cccccccCCCCcEEEEECC-CCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceE
Q 007283 49 QVSIYGEHAYPATVARFSP-NGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLV 127 (609)
Q Consensus 49 ~~~~~~~h~~~v~~~~~sp-~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~ 127 (609)
....+.||+..|+++.|.| .+.+|+|+++|+.|+||++...+.+.+++.+|+.+|..++|+++|..+++++-+. .+
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~---~l 282 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR---FL 282 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecce---ee
Confidence 3456889999999999999 9999999999999999999986667788999999999999999999999998655 56
Q ss_pred EEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEe
Q 007283 128 RAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVS 207 (609)
Q Consensus 128 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~ 207 (609)
++|+.++|.++..|.. ...++++.|+|+++..|++|+.|+.|+.||.++++..+++..|.+.|..+.|-++|+++++.+
T Consensus 283 KlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred eeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 7788778887766542 235678999999988899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEE
Q 007283 208 SDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLV 287 (609)
Q Consensus 208 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (609)
+|++++||+.+.+-.+..+... +.-...++..+|++.+++..+.|+.|.++.+.........+.+.. ..+....+
T Consensus 362 Ddks~riWe~~~~v~ik~i~~~--~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feG---h~vaGys~ 436 (503)
T KOG0282|consen 362 DDKSVRIWENRIPVPIKNIADP--EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEG---HSVAGYSC 436 (503)
T ss_pred cCccEEEEEcCCCccchhhcch--hhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcc---eeccCcee
Confidence 9999999999888766554322 333577999999999999999999999998653211111111111 11122223
Q ss_pred EEEE--cCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEe
Q 007283 288 GCLW--QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWI 353 (609)
Q Consensus 288 ~~~~--~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~ 353 (609)
.+.+ ++.++++|+.+|.+.+|+.+.. .....++.|.+.+..+.|++..+..++||+.||.|++|+
T Consensus 437 ~v~fSpDG~~l~SGdsdG~v~~wdwkt~-kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 437 QVDFSPDGRTLCSGDSDGKVNFWDWKTT-KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eEEEcCCCCeEEeecCCccEEEeechhh-hhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 3444 4669999999999999998653 334567899999999999988788999999999999994
No 50
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-29 Score=239.69 Aligned_cols=241 Identities=22% Similarity=0.375 Sum_probs=218.5
Q ss_pred cCceeEEeecCCCCeEEEeC-CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeE
Q 007283 16 RGRGILISGHPKSNSILYTN-GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKK 94 (609)
Q Consensus 16 ~~~~~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~ 94 (609)
..|+-.+.+||-.-+++..- .+.+-||+-++...+..+.--.-+|.+..|-+--+++++|+.|..|||++..+.+.. .
T Consensus 13 SdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV-~ 91 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKV-K 91 (794)
T ss_pred CCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceee-E
Confidence 44667999999998887664 357899999998888888877889999999999999999999999999999987643 5
Q ss_pred EEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCC-CeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEE
Q 007283 95 EFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSG-TNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFY 173 (609)
Q Consensus 95 ~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~ 173 (609)
.|..|+.-|++++.+|.--++++.+|+. ++++|+|+.. .+..+|.||...|.+++|.|.++..||+++-|+++++|
T Consensus 92 ~FeAH~DyIR~iavHPt~P~vLtsSDDm---~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVW 168 (794)
T KOG0276|consen 92 TFEAHSDYIRSIAVHPTLPYVLTSSDDM---TIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVW 168 (794)
T ss_pred EeeccccceeeeeecCCCCeEEecCCcc---EEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEE
Confidence 7999999999999999999999988765 6899999976 67789999999999999999999999999999999999
Q ss_pred eCCCCceeeeccCcccceEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEE
Q 007283 174 EGPPFKFKLSHRGHSNFVNCVRFSPDG--SKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTA 251 (609)
Q Consensus 174 ~~~~~~~~~~~~~h~~~v~~l~~s~dg--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~ 251 (609)
........+++.||...|+|+.|-+-| .+|++|++|.+++|||.++..++.++ .||...|..+.|+|.-..++||
T Consensus 169 slgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL---eGHt~Nvs~v~fhp~lpiiisg 245 (794)
T KOG0276|consen 169 SLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL---EGHTNNVSFVFFHPELPIIISG 245 (794)
T ss_pred EcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh---hcccccceEEEecCCCcEEEEe
Confidence 998888889999999999999998866 48999999999999999999999988 4999999999999999999999
Q ss_pred eCCCcEEEeecc
Q 007283 252 SADKSAKVWDIS 263 (609)
Q Consensus 252 s~d~~i~iwd~~ 263 (609)
|.||++|||...
T Consensus 246 sEDGTvriWhs~ 257 (794)
T KOG0276|consen 246 SEDGTVRIWNSK 257 (794)
T ss_pred cCCccEEEecCc
Confidence 999999999864
No 51
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=6.8e-32 Score=230.17 Aligned_cols=289 Identities=22% Similarity=0.344 Sum_probs=237.4
Q ss_pred EEEecCCccEEEEEEeeC--CCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007283 139 GEFDGHSRRVLSCAFKPS--RPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYD 216 (609)
Q Consensus 139 ~~~~~h~~~v~~~~~~p~--~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd 216 (609)
.+..+|+++|..++|+|- ..+.+++++.|+.=.+-+.+++..+.+|.||++.|....+..+..+-|+++.|-+.++||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 345799999999999863 235688999999888888999999999999999999999999888889999999999999
Q ss_pred CCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeE
Q 007283 217 GKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFL 296 (609)
Q Consensus 217 ~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (609)
.-++..+..+ .|+.-|.+++|+.|..+|++|+.+.-+|+||++..
T Consensus 88 a~tgdelhsf----~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p------------------------------- 132 (334)
T KOG0278|consen 88 AVTGDELHSF----EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRP------------------------------- 132 (334)
T ss_pred hhhhhhhhhh----hhhheeeeEEecccchhhhccchHHHhhhhhccCC-------------------------------
Confidence 9999988877 58889999999999999999999999999997521
Q ss_pred EEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeee
Q 007283 297 VIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAI 376 (609)
Q Consensus 297 ~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~ 376 (609)
..++.++.+|.+.|..+.|+..+ +.|++.+.|++||+||..++.
T Consensus 133 -----------------~App~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt------------------ 176 (334)
T KOG0278|consen 133 -----------------KAPPKEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGT------------------ 176 (334)
T ss_pred -----------------CCCchhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCc------------------
Confidence 12345667899999999988554 577788999999999864321
Q ss_pred CCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEc
Q 007283 377 EEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIA 456 (609)
Q Consensus 377 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 456 (609)
....++...+++++.++
T Consensus 177 ---------------------------------------------------------------~v~sL~~~s~VtSlEvs 193 (334)
T KOG0278|consen 177 ---------------------------------------------------------------EVQSLEFNSPVTSLEVS 193 (334)
T ss_pred ---------------------------------------------------------------EEEEEecCCCCcceeec
Confidence 11223334568889999
Q ss_pred CCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCc
Q 007283 457 PDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTAR 536 (609)
Q Consensus 457 p~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~ 536 (609)
+||+++.++ .-+.|.+||...-.+.... .-.--|.+.+++|+..+++.|+.|..++.||..+++..-..-++|.++
T Consensus 194 ~dG~ilTia-~gssV~Fwdaksf~~lKs~---k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gp 269 (334)
T KOG0278|consen 194 QDGRILTIA-YGSSVKFWDAKSFGLLKSY---KMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGP 269 (334)
T ss_pred cCCCEEEEe-cCceeEEeccccccceeec---cCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCc
Confidence 999977665 5678999997643332111 123357888999999999999999999999998887654445899999
Q ss_pred eEEEEECCCCcEEEEEeCCCeEEEEEcCC
Q 007283 537 INCLAWSPNNSMVATGSLDTCVIIYEIDK 565 (609)
Q Consensus 537 i~~l~~s~d~~~l~s~s~D~~v~vw~~~~ 565 (609)
|.|+.|||||...|+||.||+|++|.+..
T Consensus 270 VhcVrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 270 VHCVRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred eEEEEECCCCceeeccCCCceEEEEEecC
Confidence 99999999999999999999999999864
No 52
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=4.6e-30 Score=281.37 Aligned_cols=300 Identities=17% Similarity=0.246 Sum_probs=224.2
Q ss_pred cccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEc
Q 007283 53 YGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMW 132 (609)
Q Consensus 53 ~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 132 (609)
+.+|.+.|.+++|+|+|++||+|+.|++|+||+.......... .+
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~--~~--------------------------------- 523 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRD--IH--------------------------------- 523 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccc--cc---------------------------------
Confidence 3458999999999999999999999999999997542100000 00
Q ss_pred CCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcC-CCCEEEEEeCCCc
Q 007283 133 DSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSP-DGSKFISVSSDKK 211 (609)
Q Consensus 133 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~d~~ 211 (609)
.....+. +...|.+++|+|.....+++++.|+.+++||..+.+....+.+|...|++++|+| ++.+|++|+.|++
T Consensus 524 ---~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 524 ---YPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGS 599 (793)
T ss_pred ---cceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCE
Confidence 0001111 2346788899886555799999999999999998888888999999999999997 7889999999999
Q ss_pred EEEEeCCCCccccccCcCCCCccceEEEEEC-CCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEE
Q 007283 212 GIIYDGKTADKIGELSPEDGHKGSVYAVSWS-PDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL 290 (609)
Q Consensus 212 i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~s-pd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (609)
+++||..++..+..+. +...|.++.|+ +++.+|++|+.|+.|++||++... .
T Consensus 600 v~iWd~~~~~~~~~~~----~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~---~-------------------- 652 (793)
T PLN00181 600 VKLWSINQGVSIGTIK----TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK---L-------------------- 652 (793)
T ss_pred EEEEECCCCcEEEEEe----cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC---c--------------------
Confidence 9999999888776653 33579999995 579999999999999999985210 0
Q ss_pred EcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccce
Q 007283 291 WQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQI 370 (609)
Q Consensus 291 ~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~ 370 (609)
....+.+|...|.++.|. ++..+++++.|++|++|+.....
T Consensus 653 -------------------------~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~------------ 693 (793)
T PLN00181 653 -------------------------PLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSI------------ 693 (793)
T ss_pred -------------------------cceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCc------------
Confidence 011234677778888775 33677888888888888542100
Q ss_pred eEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCce
Q 007283 371 KCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPV 450 (609)
Q Consensus 371 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (609)
T Consensus 694 -------------------------------------------------------------------------------- 693 (793)
T PLN00181 694 -------------------------------------------------------------------------------- 693 (793)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEe--
Q 007283 451 TASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLK-- 528 (609)
Q Consensus 451 ~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~-- 528 (609)
++. . .. ....+.+|...+.+++|+|++.++++|+.|+++++|+.........
T Consensus 694 -----~~~--------~-----------~~--~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~ 747 (793)
T PLN00181 694 -----SGI--------N-----------ET--PLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYK 747 (793)
T ss_pred -----ccc--------C-----------Cc--ceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEe
Confidence 000 0 00 0123567888999999999999999999999999999654321110
Q ss_pred ----------eecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEc
Q 007283 529 ----------NMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEI 563 (609)
Q Consensus 529 ----------~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~ 563 (609)
....|...|.+++|+|++.+|++|+.||+|+||++
T Consensus 748 ~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 748 FKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 01234567999999999999999999999999986
No 53
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-31 Score=242.27 Aligned_cols=289 Identities=22% Similarity=0.343 Sum_probs=232.8
Q ss_pred EEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCC---CCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 007283 139 GEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGP---PFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIY 215 (609)
Q Consensus 139 ~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~---~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iw 215 (609)
..+..|+++|+-+.|+++|.+ +|+++.|.+..+|+.. ..+...++.||.++|..+.||||.++|++++.|..+.+|
T Consensus 218 qil~~htdEVWfl~FS~nGky-LAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKY-LASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLW 296 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCee-EeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeec
Confidence 456799999999999999986 9999999999999642 256678889999999999999999999999999999999
Q ss_pred eCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCe
Q 007283 216 DGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDF 295 (609)
Q Consensus 216 d~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (609)
|+.++++...+.. +|...+.+++|.|||..+++|+.|+++..||+++. ..
T Consensus 297 Dv~tgd~~~~y~~--~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn----~~------------------------ 346 (519)
T KOG0293|consen 297 DVDTGDLRHLYPS--GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN----IL------------------------ 346 (519)
T ss_pred cCCcchhhhhccc--CcCCCcceeEEccCCceeEecCCCCcEEEecCCcc----hh------------------------
Confidence 9999998877742 56788999999999999999999999999997521 00
Q ss_pred EEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeee
Q 007283 296 LVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAA 375 (609)
Q Consensus 296 ~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~ 375 (609)
.-|.- +
T Consensus 347 ------------------------------------------------------~~W~g---------------v----- 352 (519)
T KOG0293|consen 347 ------------------------------------------------------GNWEG---------------V----- 352 (519)
T ss_pred ------------------------------------------------------hcccc---------------c-----
Confidence 00100 0
Q ss_pred eCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEE
Q 007283 376 IEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAI 455 (609)
Q Consensus 376 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (609)
+ ...+.++++
T Consensus 353 ------------------------------------------------------------r----------~~~v~dlai 362 (519)
T KOG0293|consen 353 ------------------------------------------------------------R----------DPKVHDLAI 362 (519)
T ss_pred ------------------------------------------------------------c----------cceeEEEEE
Confidence 0 012566788
Q ss_pred cCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCC
Q 007283 456 APDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTA 535 (609)
Q Consensus 456 sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~ 535 (609)
++||+++++-..|..|++++.....- .. +.....+|++...|.|++++.+.-.+.++.+||++...... ...+|..
T Consensus 363 t~Dgk~vl~v~~d~~i~l~~~e~~~d--r~-lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~-kY~Ghkq 438 (519)
T KOG0293|consen 363 TYDGKYVLLVTVDKKIRLYNREARVD--RG-LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVR-KYFGHKQ 438 (519)
T ss_pred cCCCcEEEEEecccceeeechhhhhh--hc-cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHH-Hhhcccc
Confidence 99999999999999999998864322 22 22345689999999999999999999999999998554432 3456654
Q ss_pred c--eEEEEECC-CCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc--CCCeEEEEeCCCcEEEEEccC
Q 007283 536 R--INCLAWSP-NNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT--DEHSVVSSGEDACVRVWRLTP 608 (609)
Q Consensus 536 ~--i~~l~~s~-d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s--~~~~l~s~s~D~~i~~W~~~~ 608 (609)
. |-.-+|-. +.+++|+||.|+.|.+|+-..+ ..+..+.||++.|++|+|. +.++++|+|.||+|++|..++
T Consensus 439 ~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg--kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 439 GHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG--KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cceEEEeccCCCCcceEEecCCCceEEEEEccCC--ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 3 33445543 5689999999999999997764 4577889999999999999 457899999999999998764
No 54
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.2e-32 Score=253.39 Aligned_cols=292 Identities=22% Similarity=0.331 Sum_probs=234.3
Q ss_pred eeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCC-CceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 007283 137 NVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP-FKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIY 215 (609)
Q Consensus 137 ~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iw 215 (609)
.+.++.+|+..|.++.|.|....++++||.|+.|++|+... +++.++|.||..+|..++|+++|..|++++.|+.+++|
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlw 285 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLW 285 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeee
Confidence 45678899999999999996566799999999999999765 78999999999999999999999999999999999999
Q ss_pred eCCCCccccccCcCCCCccceEEEEECCCC-CeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCC
Q 007283 216 DGKTADKIGELSPEDGHKGSVYAVSWSPDG-KQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQND 294 (609)
Q Consensus 216 d~~~~~~~~~~~~~~~h~~~V~~l~~spd~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (609)
|.++|+++..+. -...++++.|+||+ ..+++|+.|+.|+.||++. +++.++
T Consensus 286 DtETG~~~~~f~----~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs---~kvvqe--------------------- 337 (503)
T KOG0282|consen 286 DTETGQVLSRFH----LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS---GKVVQE--------------------- 337 (503)
T ss_pred ccccceEEEEEe----cCCCceeeecCCCCCcEEEEecCCCcEEEEeccc---hHHHHH---------------------
Confidence 999999988773 23467899999998 7899999999999999873 333222
Q ss_pred eEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEee
Q 007283 295 FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFA 374 (609)
Q Consensus 295 ~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~ 374 (609)
...|-+.|..+.|.+ .+..+++.+.|+++++|+.......+...
T Consensus 338 -------------------------Yd~hLg~i~~i~F~~-~g~rFissSDdks~riWe~~~~v~ik~i~---------- 381 (503)
T KOG0282|consen 338 -------------------------YDRHLGAILDITFVD-EGRRFISSSDDKSVRIWENRIPVPIKNIA---------- 381 (503)
T ss_pred -------------------------HHhhhhheeeeEEcc-CCceEeeeccCccEEEEEcCCCccchhhc----------
Confidence 223666777788775 45789999999999999643221000000
Q ss_pred eeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEE
Q 007283 375 AIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASA 454 (609)
Q Consensus 375 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (609)
....+...++.
T Consensus 382 ---------------------------------------------------------------------~~~~hsmP~~~ 392 (503)
T KOG0282|consen 382 ---------------------------------------------------------------------DPEMHTMPCLT 392 (503)
T ss_pred ---------------------------------------------------------------------chhhccCccee
Confidence 00012356788
Q ss_pred EcCCCCEEEEEeCCCcEEEEEecCCe-eeeeEEEecCCC--ceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeec
Q 007283 455 IAPDGSEAIIGSQDGKLRVYSIRGDT-LTEEAVLEKHRG--AVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNML 531 (609)
Q Consensus 455 ~sp~g~~l~~gs~dg~i~iw~~~~~~-~~~~~~~~~h~~--~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~ 531 (609)
.+|++.+++.-+-|..|.+|.+.... +..++.+++|.. --..+.|||||.+|++|+.||.+.+||..+... +..+.
T Consensus 393 ~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl-~~~lk 471 (503)
T KOG0282|consen 393 LHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKL-VSKLK 471 (503)
T ss_pred cCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhh-hhccc
Confidence 99999999999999999999865322 233456777853 356789999999999999999999999766543 44578
Q ss_pred CCCCceEEEEECCCC-cEEEEEeCCCeEEEEE
Q 007283 532 YHTARINCLAWSPNN-SMVATGSLDTCVIIYE 562 (609)
Q Consensus 532 ~h~~~i~~l~~s~d~-~~l~s~s~D~~v~vw~ 562 (609)
.|+..+..+.|+|.. ..+||++.||.|++|+
T Consensus 472 ah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 472 AHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 899999999999965 5799999999999996
No 55
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=6.2e-30 Score=280.36 Aligned_cols=307 Identities=21% Similarity=0.347 Sum_probs=227.7
Q ss_pred CCeEEEEeCCCCceeee-----ccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----ccccccCcCCCCccceE
Q 007283 167 DFLVNFYEGPPFKFKLS-----HRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTA----DKIGELSPEDGHKGSVY 237 (609)
Q Consensus 167 d~~i~~~~~~~~~~~~~-----~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~h~~~V~ 237 (609)
++..++|+....+.... +.+|...|.+++|+|+|++||+|+.|+.|+||+.... ..+........+...|.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 536 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS 536 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee
Confidence 44556666554433322 3458999999999999999999999999999996532 11110000012346789
Q ss_pred EEEECC-CCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCC
Q 007283 238 AVSWSP-DGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKS 316 (609)
Q Consensus 238 ~l~~sp-d~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~ 316 (609)
+++|+| ++.+|++++.|++|++||+.. ++..
T Consensus 537 ~l~~~~~~~~~las~~~Dg~v~lWd~~~---~~~~--------------------------------------------- 568 (793)
T PLN00181 537 GICWNSYIKSQVASSNFEGVVQVWDVAR---SQLV--------------------------------------------- 568 (793)
T ss_pred eEEeccCCCCEEEEEeCCCeEEEEECCC---CeEE---------------------------------------------
Confidence 999987 478999999999999999752 1111
Q ss_pred ceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccC
Q 007283 317 PLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQG 396 (609)
Q Consensus 317 ~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 396 (609)
..+.+|...|.+++|++.++.++++|+.|++|++|+...+.. +.
T Consensus 569 -~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~----------~~------------------------- 612 (793)
T PLN00181 569 -TEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS----------IG------------------------- 612 (793)
T ss_pred -EEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE----------EE-------------------------
Confidence 234568899999999866678999999999999997643210 00
Q ss_pred CccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEE-cCCCCEEEEEeCCCcEEEEE
Q 007283 397 DQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAI-APDGSEAIIGSQDGKLRVYS 475 (609)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-sp~g~~l~~gs~dg~i~iw~ 475 (609)
.+.....+.++.+ +++|.++++|+.||.|++||
T Consensus 613 ----------------------------------------------~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD 646 (793)
T PLN00181 613 ----------------------------------------------TIKTKANICCVQFPSESGRSLAFGSADHKVYYYD 646 (793)
T ss_pred ----------------------------------------------EEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEE
Confidence 0000123556666 46799999999999999999
Q ss_pred ecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCC-----ceEEeeecCCCCceEEEEECCCCcEEE
Q 007283 476 IRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSR-----EVKLKNMLYHTARINCLAWSPNNSMVA 550 (609)
Q Consensus 476 ~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~-----~~~~~~~~~h~~~i~~l~~s~d~~~l~ 550 (609)
++.... ....+.+|...|.++.|. ++.++++++.|+++++||+... ...+..+.+|...+++++|+|++++||
T Consensus 647 ~~~~~~-~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~la 724 (793)
T PLN00181 647 LRNPKL-PLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIA 724 (793)
T ss_pred CCCCCc-cceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEE
Confidence 975432 234567899999999997 7889999999999999998642 123445778999999999999999999
Q ss_pred EEeCCCeEEEEEcCCCCCccee------------EeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEc
Q 007283 551 TGSLDTCVIIYEIDKPASSRMT------------IKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRL 606 (609)
Q Consensus 551 s~s~D~~v~vw~~~~~~~~~~~------------~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~ 606 (609)
+|+.|++|++|+...+. .... ....|...|.+++|+ ++.+|++++.||.|++|++
T Consensus 725 sgs~D~~v~iw~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 725 TGSETNEVFVYHKAFPM-PVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEeCCCEEEEEECCCCC-ceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 99999999999975432 1110 012355679999999 7789999999999999987
No 56
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.4e-30 Score=261.41 Aligned_cols=290 Identities=26% Similarity=0.420 Sum_probs=230.4
Q ss_pred eeccC-cccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--cccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEE
Q 007283 182 LSHRG-HSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTAD--KIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAK 258 (609)
Q Consensus 182 ~~~~~-h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~ 258 (609)
..+.+ |...|.++.|+|+|+.+++++.|+.+++|+....+ ....+ .+|...|..++|+||++++++++.|++|+
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l---~~h~~~v~~~~fs~d~~~l~s~s~D~tir 228 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL---SGHTRGVSDVAFSPDGSYLLSGSDDKTLR 228 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc---cccccceeeeEECCCCcEEEEecCCceEE
Confidence 33434 47889999999999999999999999999986666 33333 58999999999999999999999999999
Q ss_pred EeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCC
Q 007283 259 VWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPK 338 (609)
Q Consensus 259 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 338 (609)
+||+.. .+.. ...+.+|...|.+++|++.. +
T Consensus 229 iwd~~~--~~~~----------------------------------------------~~~l~gH~~~v~~~~f~p~g-~ 259 (456)
T KOG0266|consen 229 IWDLKD--DGRN----------------------------------------------LKTLKGHSTYVTSVAFSPDG-N 259 (456)
T ss_pred EeeccC--CCeE----------------------------------------------EEEecCCCCceEEEEecCCC-C
Confidence 999832 1111 23466899999999998765 8
Q ss_pred EEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeec
Q 007283 339 VILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVAL 418 (609)
Q Consensus 339 ~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (609)
++++|+.|++|++|+..++..
T Consensus 260 ~i~Sgs~D~tvriWd~~~~~~----------------------------------------------------------- 280 (456)
T KOG0266|consen 260 LLVSGSDDGTVRIWDVRTGEC----------------------------------------------------------- 280 (456)
T ss_pred EEEEecCCCcEEEEeccCCeE-----------------------------------------------------------
Confidence 999999999999997653210
Q ss_pred cCCcEEEEEecccEEEeeCCeeeEEe-ccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCc--eE
Q 007283 419 HYPELVLVSTDSGVVLLRGAEVVSTI-NLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGA--VS 495 (609)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~--i~ 495 (609)
...+ .+..++++++|+++|+++++++.|+.|++||+.++.+.....+.++... ++
T Consensus 281 ----------------------~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 338 (456)
T KOG0266|consen 281 ----------------------VRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVT 338 (456)
T ss_pred ----------------------EEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCcee
Confidence 0011 1234689999999999999999999999999988774323445566555 99
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCc---eEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCccee
Q 007283 496 VIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTAR---INCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMT 572 (609)
Q Consensus 496 ~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~---i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~ 572 (609)
++.|+|++.+++++..|+.+++||+...... ....+|... +.+...++.++++.+|+.|+.|.+|++.... ...
T Consensus 339 ~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~--~~~ 415 (456)
T KOG0266|consen 339 SVQFSPNGKYLLSASLDRTLKLWDLRSGKSV-GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG--ILQ 415 (456)
T ss_pred EEEECCCCcEEEEecCCCeEEEEEccCCcce-eeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccc--hhh
Confidence 9999999999999999999999998766543 345566664 4445567899999999999999999998632 234
Q ss_pred Eeccc-cCCeEEEEEc-CCCeEEEEe--CCCcEEEEEcc
Q 007283 573 IKGAH-LGGVYGLAFT-DEHSVVSSG--EDACVRVWRLT 607 (609)
Q Consensus 573 ~~~~h-~~~v~~~~~s-~~~~l~s~s--~D~~i~~W~~~ 607 (609)
.+.+| ...|..+++. ..+++++++ .|+.+++|...
T Consensus 416 ~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 416 RLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred hhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 45678 8889999999 667888887 79999999865
No 57
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.98 E-value=1.9e-30 Score=234.29 Aligned_cols=309 Identities=21% Similarity=0.258 Sum_probs=231.4
Q ss_pred cCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCC---CEEEEEeCCCcEEEEeCCC
Q 007283 143 GHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDG---SKFISVSSDKKGIIYDGKT 219 (609)
Q Consensus 143 ~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg---~~l~s~~~d~~i~iwd~~~ 219 (609)
.|.+-|.++...+ . .|.+|++|+.+++|+.. ++......||.++|.++++-... ..|++++.|.++++|.++.
T Consensus 103 ~hdDWVSsv~~~~--~-~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 103 LHDDWVSSVKGAS--K-WILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred cchhhhhhhcccC--c-eEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 4666777776663 2 49999999999999965 77888899999999977764332 2599999999999998877
Q ss_pred Ccccc-ccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEE
Q 007283 220 ADKIG-ELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVI 298 (609)
Q Consensus 220 ~~~~~-~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (609)
++... ......||.+.|.+++..++|.++++||.|.+|+||+..... ............. +...
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~-~~~~E~~s~~rrk-------------~~~~- 243 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDE-EDELESSSNRRRK-------------KQKR- 243 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCc-cccccccchhhhh-------------hhhh-
Confidence 66432 222335999999999999999999999999999999932110 0000000000000 0000
Q ss_pred EEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCC
Q 007283 299 VSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEE 378 (609)
Q Consensus 299 ~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (609)
-.......+...+.||+..|.++.|.+ +..++++|.|.+|+.||+.++...
T Consensus 244 ---------~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~------------------ 294 (423)
T KOG0313|consen 244 ---------EKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLK------------------ 294 (423)
T ss_pred ---------hhcccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccce------------------
Confidence 000011234457899999999999976 478999999999999987543210
Q ss_pred cEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCC
Q 007283 379 EIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPD 458 (609)
Q Consensus 379 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 458 (609)
..+.....+.+++.+|.
T Consensus 295 ---------------------------------------------------------------~~~~~~ksl~~i~~~~~ 311 (423)
T KOG0313|consen 295 ---------------------------------------------------------------STLTTNKSLNCISYSPL 311 (423)
T ss_pred ---------------------------------------------------------------eeeecCcceeEeecccc
Confidence 00111234678889999
Q ss_pred CCEEEEEeCCCcEEEEEecCCe-eeeeEEEecCCCceEEEEECCCC-CEEEEEeCCCeEEEEEccCCceEEeeecCCCCc
Q 007283 459 GSEAIIGSQDGKLRVYSIRGDT-LTEEAVLEKHRGAVSVIRYSPDV-SMFASGDVNREAIVWDRVSREVKLKNMLYHTAR 536 (609)
Q Consensus 459 g~~l~~gs~dg~i~iw~~~~~~-~~~~~~~~~h~~~i~~v~~s~~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~ 536 (609)
.+++|+|+.|..||+||-+.+. ......+.+|++.|.++.|+|.. ..|+||+.|+++++||+++..-.+-.+.+|.+.
T Consensus 312 ~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DK 391 (423)
T KOG0313|consen 312 SKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDK 391 (423)
T ss_pred cceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCce
Confidence 9999999999999999976543 22356789999999999999986 468899999999999998877566678899999
Q ss_pred eEEEEECCCCcEEEEEeCCCeEEEEEc
Q 007283 537 INCLAWSPNNSMVATGSLDTCVIIYEI 563 (609)
Q Consensus 537 i~~l~~s~d~~~l~s~s~D~~v~vw~~ 563 (609)
|.++.|. ++..+++|+.|++|+++.-
T Consensus 392 vl~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 392 VLSVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred EEEEecc-CCceEEeccCcceEEEecc
Confidence 9999998 6778999999999999864
No 58
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.98 E-value=6.2e-29 Score=240.91 Aligned_cols=205 Identities=30% Similarity=0.537 Sum_probs=177.0
Q ss_pred cccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEE
Q 007283 51 SIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAF 130 (609)
Q Consensus 51 ~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~ 130 (609)
..+.+|+++|++++|+|++++|++++.|+.|++|+..+++. ...+..|...+..+.|+|+++++++++.+. .+++|
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~---~i~i~ 78 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL-LRTLKGHTGPVRDVAASADGTYLASGSSDK---TIRLW 78 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc-EEEEecCCcceeEEEECCCCCEEEEEcCCC---eEEEE
Confidence 35678999999999999999999999999999999987653 345667888899999999998888877533 46777
Q ss_pred EcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCC
Q 007283 131 MWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDK 210 (609)
Q Consensus 131 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~ 210 (609)
+.+.+..+..+..|...|.++.|+|++. .+++++.|+.+.+|+....+....+..|...+.++.|+|++.++++++.|+
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 157 (289)
T cd00200 79 DLETGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDG 157 (289)
T ss_pred EcCcccceEEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCC
Confidence 7777677888889999999999999965 577888899999999988888888888999999999999998888888899
Q ss_pred cEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283 211 KGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS 263 (609)
Q Consensus 211 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~ 263 (609)
.+.+||...++.+..+. .|...|.++.|+|+++.+++++.|+.+++||+.
T Consensus 158 ~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~ 207 (289)
T cd00200 158 TIKLWDLRTGKCVATLT---GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS 207 (289)
T ss_pred cEEEEEccccccceeEe---cCccccceEEECCCcCEEEEecCCCcEEEEECC
Confidence 99999998877766553 678899999999999999999999999999975
No 59
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=8.9e-29 Score=239.81 Aligned_cols=287 Identities=30% Similarity=0.464 Sum_probs=231.3
Q ss_pred EEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 007283 139 GEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGK 218 (609)
Q Consensus 139 ~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~ 218 (609)
..+.+|..+|.+++|+|++.. +++++.|+.+.+|+..+.+....+.+|...+..+.|+|+++.|++++.|+.+.+|+..
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~-l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKL-LATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCE-EEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 346789999999999999874 8889999999999988877777788899999999999999999999999999999998
Q ss_pred CCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEE
Q 007283 219 TADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVI 298 (609)
Q Consensus 219 ~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (609)
.++.+..+ ..|...|.++.|+|+++++++++.|+.+++||+.. .+..
T Consensus 82 ~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~--------------------------- 128 (289)
T cd00200 82 TGECVRTL---TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET---GKCL--------------------------- 128 (289)
T ss_pred cccceEEE---eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC---cEEE---------------------------
Confidence 87665554 36788999999999999998888899999999852 1111
Q ss_pred EEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCC
Q 007283 299 VSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEE 378 (609)
Q Consensus 299 ~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (609)
..+..|...+.++.+++. +.++++++.|+.+++|+...... +
T Consensus 129 -------------------~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~----------~-------- 170 (289)
T cd00200 129 -------------------TTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKC----------V-------- 170 (289)
T ss_pred -------------------EEeccCCCcEEEEEEcCc-CCEEEEEcCCCcEEEEEcccccc----------c--------
Confidence 112246667888888754 56788888899999997542100 0
Q ss_pred cEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCC
Q 007283 379 EIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPD 458 (609)
Q Consensus 379 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 458 (609)
..+ ..+..++.+++++|+
T Consensus 171 -----------~~~---------------------------------------------------~~~~~~i~~~~~~~~ 188 (289)
T cd00200 171 -----------ATL---------------------------------------------------TGHTGEVNSVAFSPD 188 (289)
T ss_pred -----------eeE---------------------------------------------------ecCccccceEEECCC
Confidence 000 001124778899999
Q ss_pred CCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceE
Q 007283 459 GSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARIN 538 (609)
Q Consensus 459 g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~ 538 (609)
++.+++++.|+.|++|+++.+.. ...+..|...|.++.|+|++.++++++.|+.+++||..+.+. ...+..|...|.
T Consensus 189 ~~~l~~~~~~~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~-~~~~~~~~~~i~ 265 (289)
T cd00200 189 GEKLLSSSSDGTIKLWDLSTGKC--LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC-VQTLSGHTNSVT 265 (289)
T ss_pred cCEEEEecCCCcEEEEECCCCce--ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCcee-EEEccccCCcEE
Confidence 99999999999999999976544 344557888999999999999999999899999999876543 334557889999
Q ss_pred EEEECCCCcEEEEEeCCCeEEEEE
Q 007283 539 CLAWSPNNSMVATGSLDTCVIIYE 562 (609)
Q Consensus 539 ~l~~s~d~~~l~s~s~D~~v~vw~ 562 (609)
+++|+|++++|++++.|+.|++|+
T Consensus 266 ~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 266 SLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEECCCCCEEEEecCCCeEEecC
Confidence 999999999999999999999995
No 60
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.4e-26 Score=222.88 Aligned_cols=489 Identities=16% Similarity=0.169 Sum_probs=323.0
Q ss_pred CCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeec-ccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCC
Q 007283 58 YPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVL-SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGT 136 (609)
Q Consensus 58 ~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 136 (609)
..|.++||+.+.+.||.+-.||.|.||.+...-.+...+.++ +..|..++|+ +|.+|+++|-+. .+.-|+..+.+
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg---~i~EwDl~~lk 101 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSG---SITEWDLHTLK 101 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCc---eEEEEecccCc
Confidence 359999999999999999999999999998877776677766 4579999999 555888877443 24456666777
Q ss_pred eeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCcee--eeccCcccceEEEEEcCCCCEEEEEeCCCcEEE
Q 007283 137 NVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFK--LSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII 214 (609)
Q Consensus 137 ~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~--~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~i 214 (609)
....+....+.|++++.+|.+. .++.|..||.+.+.++.+.+.. ..+...+..|.++.|+|++..|++|+.||.|++
T Consensus 102 ~~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iri 180 (691)
T KOG2048|consen 102 QKYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRI 180 (691)
T ss_pred eeEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEE
Confidence 7788888889999999999986 5888889998888888887654 446667789999999999999999999999999
Q ss_pred EeCCCCcccc-----ccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEE
Q 007283 215 YDGKTADKIG-----ELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGC 289 (609)
Q Consensus 215 wd~~~~~~~~-----~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (609)
||...+..+. .....++-+--|.++.|-.++ .|++|-..|+|++||... +.+++.+.... .+....+.
T Consensus 181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~---gTLiqS~~~h~---adVl~Lav 253 (691)
T KOG2048|consen 181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIF---GTLIQSHSCHD---ADVLALAV 253 (691)
T ss_pred EEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccC---cchhhhhhhhh---cceeEEEE
Confidence 9999888665 111112234457888887665 688888899999999763 44444333221 11223344
Q ss_pred EEcCCeEEEEEcCCcEEEEeCCCCCC---CceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCcc--ccceecc
Q 007283 290 LWQNDFLVIVSLGGTISIFSANDLEK---SPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIG--YGGKLQR 364 (609)
Q Consensus 290 ~~~~~~~~~~~~~g~i~~~~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~--~~~~~~~ 364 (609)
..+++.+++++.|+.+-.|....... .......|...|.++++.. ..+++|+.|.++.+-....- .......
T Consensus 254 ~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~---~~l~sgG~d~~l~i~~s~~~~~~~h~~~~ 330 (691)
T KOG2048|consen 254 ADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE---NALISGGRDFTLAICSSREFKNMDHRQKN 330 (691)
T ss_pred cCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeec---ceEEecceeeEEEEccccccCchhhhccc
Confidence 44568999999999988887654422 2233457888999999875 38999999999987643320 0000000
Q ss_pred cc-ccceeEeeeeCCcEEEEeccceEEEEeccCCcc----ccccccc--cC-C-CCceeEeeccCCcEEEEEecccEEEe
Q 007283 365 KE-NSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQC----GYANSID--IG-S-QPKDLSVALHYPELVLVSTDSGVVLL 435 (609)
Q Consensus 365 ~~-~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~----~~~~~~~--~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (609)
.+ .+.....+ ..+.++..-.+..+..|.+..... .+..-.. .. . .....++.+ .+.+++.++-....++
T Consensus 331 ~~p~~~~v~~a-~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~Ia~st~~~~~iy 408 (691)
T KOG2048|consen 331 LFPASDRVSVA-PENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP-DGNLIAISTVSRTKIY 408 (691)
T ss_pred cccccceeecC-ccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC-CCCEEEEeeccceEEE
Confidence 00 00111111 122222222222233332222100 0000000 00 0 111122222 2345555554444443
Q ss_pred e--CCeeeEEecc------CCceeEEEEcCCCCEEEEEe-CCCcEEEEEecCCeeeeeE--EEecCCCceEEEEECCCCC
Q 007283 436 R--GAEVVSTINL------RFPVTASAIAPDGSEAIIGS-QDGKLRVYSIRGDTLTEEA--VLEKHRGAVSVIRYSPDVS 504 (609)
Q Consensus 436 ~--~~~~~~~~~~------~~~~~~~~~sp~g~~l~~gs-~dg~i~iw~~~~~~~~~~~--~~~~h~~~i~~v~~s~~~~ 504 (609)
+ ....+..... ..+...+.|+-|+..++..+ .+..+.+++.......+.. ..+.....|..+..||+|+
T Consensus 409 ~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~ 488 (691)
T KOG2048|consen 409 RLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGN 488 (691)
T ss_pred EeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCC
Confidence 2 1112222211 13456677888888887777 6788888887665432211 1224567899999999999
Q ss_pred EEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECC-CCcEEEEEeCCCeEEEEEcC
Q 007283 505 MFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSP-NNSMVATGSLDTCVIIYEID 564 (609)
Q Consensus 505 ~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~-d~~~l~s~s~D~~v~vw~~~ 564 (609)
++|+.+.++.|.+|++++.+.... ...-+..||+++|+| +-..|+.+..|+.|.=||++
T Consensus 489 yiaa~~t~g~I~v~nl~~~~~~~l-~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~ 548 (691)
T KOG2048|consen 489 YIAAISTRGQIFVYNLETLESHLL-KVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIE 548 (691)
T ss_pred EEEEEeccceEEEEEcccceeecc-hhccCcceeeeeccccccCcEEEEecCCeEEEEecc
Confidence 999999999999999988765432 124458899999995 55678999999999999984
No 61
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.1e-30 Score=232.83 Aligned_cols=282 Identities=22% Similarity=0.337 Sum_probs=220.3
Q ss_pred cceeecCCCccCcCceeEEeecCCCCeEEEe-CCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEE
Q 007283 4 LAETYTCVPSTERGRGILISGHPKSNSILYT-NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVR 82 (609)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~ 82 (609)
+..|+-|-.....| +..++... +.++++ .+++|.|||..+......+.||.+.|-|+.|. .+.|+|||.|.||+
T Consensus 186 ~~~rinc~Se~skg-VYClQYDD--~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvr 260 (499)
T KOG0281|consen 186 LLQRINCRSENSKG-VYCLQYDD--EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVR 260 (499)
T ss_pred eeeeecCCcccCCc-eEEEEecc--hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEE
Confidence 45667776665554 45666652 346665 36888888888877778888888888888875 45888888888888
Q ss_pred EEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEE
Q 007283 83 IWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIA 162 (609)
Q Consensus 83 vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~ 162 (609)
|||+++++.+. ++-+|...|..+.|+.. .++
T Consensus 261 vWDv~tge~l~----------------------------------------------tlihHceaVLhlrf~ng---~mv 291 (499)
T KOG0281|consen 261 VWDVNTGEPLN----------------------------------------------TLIHHCEAVLHLRFSNG---YMV 291 (499)
T ss_pred EEeccCCchhh----------------------------------------------HHhhhcceeEEEEEeCC---EEE
Confidence 88888876432 23467777777777653 599
Q ss_pred EecCCCeEEEEeCCCC---ceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEE
Q 007283 163 TCGEDFLVNFYEGPPF---KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAV 239 (609)
Q Consensus 163 t~~~d~~i~~~~~~~~---~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l 239 (609)
+|+.|+.+.+||.... .+.+.+.||...|+.+.|+ .+++++++.|.++++|+..+.+.+.++. +|...|-|+
T Consensus 292 tcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~---gHkRGIACl 366 (499)
T KOG0281|consen 292 TCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLN---GHKRGIACL 366 (499)
T ss_pred EecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhh---cccccceeh
Confidence 9999999999996543 2445688999999999995 4599999999999999999999998884 899999888
Q ss_pred EECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCC---
Q 007283 240 SWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKS--- 316 (609)
Q Consensus 240 ~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~--- 316 (609)
.+ .++++++||.|.+||+||+. .|+....+. +.++.+-+.-++++.+++++-||.|++|++.....+
T Consensus 367 QY--r~rlvVSGSSDntIRlwdi~---~G~cLRvLe-----GHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~ 436 (499)
T KOG0281|consen 367 QY--RDRLVVSGSSDNTIRLWDIE---CGACLRVLE-----GHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAP 436 (499)
T ss_pred hc--cCeEEEecCCCceEEEEecc---ccHHHHHHh-----chHHhhhheeecCceeeeccccceEEEEecccccCCccc
Confidence 76 68999999999999999987 455554443 234555666788999999999999999998755433
Q ss_pred -----ceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCcc
Q 007283 317 -----PLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIG 357 (609)
Q Consensus 317 -----~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~ 357 (609)
...+..|++.|-.+.|. ...++++++|-+|.+|+...+
T Consensus 437 ~~~~Cl~~lv~hsgRVFrLQFD---~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 437 ASTLCLRTLVEHSGRVFRLQFD---EFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred ccchHHHhhhhccceeEEEeec---ceEEEeccCCCeEEEEEcCCC
Confidence 22456799999999884 368999999999999987654
No 62
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1.5e-29 Score=228.57 Aligned_cols=309 Identities=20% Similarity=0.342 Sum_probs=224.8
Q ss_pred CcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCC---eEEEEeCCCcEEEeec
Q 007283 186 GHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGK---QVLTASADKSAKVWDI 262 (609)
Q Consensus 186 ~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~---~l~s~s~d~~i~iwd~ 262 (609)
-|.+.|.++... +++|++|+.||.+++||. .|+.+.++ .||.++|.+++|.--.. .|+++|.|.++++|..
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~---~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~ 176 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTI---VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW 176 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEE---ecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence 478889888887 669999999999999995 56666665 38999999888865433 5999999999999987
Q ss_pred ccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEE
Q 007283 263 SEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILS 342 (609)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t 342 (609)
+.... + ....+...||...|.++... .++..+++
T Consensus 177 ~~~~~---~------------------------------------------~~~~~~~~GHk~~V~sVsv~-~sgtr~~S 210 (423)
T KOG0313|consen 177 NVGEN---K------------------------------------------VKALKVCRGHKRSVDSVSVD-SSGTRFCS 210 (423)
T ss_pred cCchh---h------------------------------------------hhHHhHhcccccceeEEEec-CCCCeEEe
Confidence 53210 0 00112234899999999875 45678999
Q ss_pred EecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCcc-ccccccccCCCCceeEeeccCC
Q 007283 343 SSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQC-GYANSIDIGSQPKDLSVALHYP 421 (609)
Q Consensus 343 ~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 421 (609)
||.|.++.+|+........ ... ... +..+. ..... .
T Consensus 211 gS~D~~lkiWs~~~~~~~~--------~E~----------~s~---------~rrk~~~~~~~---~------------- 247 (423)
T KOG0313|consen 211 GSWDTMLKIWSVETDEEDE--------LES----------SSN---------RRRKKQKREKE---G------------- 247 (423)
T ss_pred ecccceeeecccCCCcccc--------ccc----------cch---------hhhhhhhhhhc---c-------------
Confidence 9999999999722110000 000 000 00000 00000 0
Q ss_pred cEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECC
Q 007283 422 ELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSP 501 (609)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~ 501 (609)
.....+.....|+.+|.++.+++ ...+.+++.|.+|+.||+..+....... -...++|++++|
T Consensus 248 -------------~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~---~~ksl~~i~~~~ 310 (423)
T KOG0313|consen 248 -------------GTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT---TNKSLNCISYSP 310 (423)
T ss_pred -------------cccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee---cCcceeEeeccc
Confidence 00001111223567899998887 6779999999999999998776533222 245799999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCce--EEeeecCCCCceEEEEECCCC-cEEEEEeCCCeEEEEEcCCCCCcceeEecccc
Q 007283 502 DVSMFASGDVNREAIVWDRVSREV--KLKNMLYHTARINCLAWSPNN-SMVATGSLDTCVIIYEIDKPASSRMTIKGAHL 578 (609)
Q Consensus 502 ~~~~l~s~s~d~~v~iwd~~~~~~--~~~~~~~h~~~i~~l~~s~d~-~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~ 578 (609)
...++++|+.|+-+++||.+++.- ....+.+|+..|.++.|+|-+ .+|++|+.|+++++||+...... +....+|.
T Consensus 311 ~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~p-lydI~~h~ 389 (423)
T KOG0313|consen 311 LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAP-LYDIAGHN 389 (423)
T ss_pred ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCc-ceeeccCC
Confidence 999999999999999999877543 334578999999999999965 67899999999999999865533 44556799
Q ss_pred CCeEEEEEcCCCeEEEEeCCCcEEEEEcc
Q 007283 579 GGVYGLAFTDEHSVVSSGEDACVRVWRLT 607 (609)
Q Consensus 579 ~~v~~~~~s~~~~l~s~s~D~~i~~W~~~ 607 (609)
..|.++.|..+..|+|||+|+.|+++.-.
T Consensus 390 DKvl~vdW~~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 390 DKVLSVDWNEGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ceEEEEeccCCceEEeccCcceEEEeccc
Confidence 99999999999999999999999998643
No 63
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=4.3e-30 Score=227.05 Aligned_cols=288 Identities=22% Similarity=0.357 Sum_probs=238.5
Q ss_pred cCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCcee-------eEEEeecccceeEEEECCCCCEEEEEECCCCcceE
Q 007283 55 EHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVL-------KKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLV 127 (609)
Q Consensus 55 ~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~-------~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~ 127 (609)
|.+.-+.|.+|||||+||++|+.||-|.||+..+++.- ...|..+..+|.++.||.|.+.|++...+. -+
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDG---kI 287 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDG---KI 287 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCC---cE
Confidence 44556899999999999999999999999999887631 124556788999999999999888765322 26
Q ss_pred EEEEcCCCCeeEEEe-cCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEE
Q 007283 128 RAFMWDSGTNVGEFD-GHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISV 206 (609)
Q Consensus 128 ~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~ 206 (609)
++|...++.++.-|. .|+..|+++.|+.|+.. +.+++.|.++++.-...+++..+++||..+|+...|++||..++++
T Consensus 288 KvWri~tG~ClRrFdrAHtkGvt~l~FSrD~Sq-iLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 288 KVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQ-ILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred EEEEEecchHHHHhhhhhccCeeEEEEccCcch-hhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEe
Confidence 677777898888886 89999999999999985 9999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCC-CeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccce
Q 007283 207 SSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDG-KQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDM 285 (609)
Q Consensus 207 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 285 (609)
+.||++++|+.++.+++.++.+. +..-.|+++..-|.+ ..++.+-..+++.+-++. ++..+.+......+-+.+
T Consensus 367 SsDgtvkvW~~KtteC~~Tfk~~-~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q----GQvVrsfsSGkREgGdFi 441 (508)
T KOG0275|consen 367 SSDGTVKVWHGKTTECLSTFKPL-GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ----GQVVRSFSSGKREGGDFI 441 (508)
T ss_pred cCCccEEEecCcchhhhhhccCC-CCcccceeEEEcCCCCceEEEEcCCCeEEEEecc----ceEEeeeccCCccCCceE
Confidence 99999999999999999988764 456689999888854 578888889999999985 677777765544333333
Q ss_pred EEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEe
Q 007283 286 LVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWI 353 (609)
Q Consensus 286 ~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~ 353 (609)
.......++.+++.+.|+.+++|..... .....+.-|.+.|..++-++ ..+++++-+.||.+++|.
T Consensus 442 ~~~lSpkGewiYcigED~vlYCF~~~sG-~LE~tl~VhEkdvIGl~HHP-HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 442 NAILSPKGEWIYCIGEDGVLYCFSVLSG-KLERTLPVHEKDVIGLTHHP-HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEecCCCcEEEEEccCcEEEEEEeecC-ceeeeeecccccccccccCc-ccchhhhhcccchhhhcC
Confidence 3444455789999999999999986543 33456788999999998664 447899999999999993
No 64
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=5.9e-29 Score=218.69 Aligned_cols=293 Identities=20% Similarity=0.380 Sum_probs=224.0
Q ss_pred ccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCC------------C-----ceeeEEEeecccceeEEEECCCCCE
Q 007283 52 IYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHN------------D-----HVLKKEFRVLSGRIDDLQWSPDGLR 114 (609)
Q Consensus 52 ~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~------------~-----~~~~~~~~~~~~~v~~~~~spdg~~ 114 (609)
.+..|+.+..+.+|||||.++|+|+.|..|+|.|++. + ..+.+++=.|..+|..+.|+|-...
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I 186 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI 186 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence 3568999999999999999999999999999999971 1 1344556668889999999999877
Q ss_pred EEEEECCCCcceEEEEEcCCCCeeEEE--ecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeee---ccCccc
Q 007283 115 IVACGDGKGKSLVRAFMWDSGTNVGEF--DGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLS---HRGHSN 189 (609)
Q Consensus 115 l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~---~~~h~~ 189 (609)
|++.+.+. .++++++.+...-..+ -....+|.+++|||.|.+ ++.|..--++++||+.+.++... -.+|..
T Consensus 187 LiS~srD~---tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGef-llvgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 187 LISGSRDN---TVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEF-LLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred EEeccCCC---eEEEEecccHHHHHHHHHhhccceeeeEeecCCCce-EEEecCCCceeEEeccceeEeeecCccccccc
Confidence 77755433 5778887754221111 134568999999999996 66666667899999998877554 357999
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCc-cceEEEEECCCCCeEEEEeCCCcEEEeecccCCCC
Q 007283 190 FVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHK-GSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHG 268 (609)
Q Consensus 190 ~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~-~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~ 268 (609)
.|+++.+++.|++.++|+.||.|+|||.-.++++.++. .+|. ..|.++.|..+|+|+++.+.|..+++|++. .+
T Consensus 263 ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~--~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~---t~ 337 (430)
T KOG0640|consen 263 AITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIG--NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIS---TG 337 (430)
T ss_pred ceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHH--hhcCCceeeeEEEccCCeEEeecCCcceeeeeeec---CC
Confidence 99999999999999999999999999999999998885 3565 479999999999999999999999999997 46
Q ss_pred ceEEEeccCCCCCccceEEEEEEc--CCeEEEE-EcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEec
Q 007283 269 KLKKTLTPSGSGGVDDMLVGCLWQ--NDFLVIV-SLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSY 345 (609)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~ 345 (609)
+.++.++..+..+-........++ .++++.- -..+.+..|+.+..........||.+.+..+.-++ ...-++||+.
T Consensus 338 R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP-~~p~FmTcsd 416 (430)
T KOG0640|consen 338 RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSP-VEPAFMTCSD 416 (430)
T ss_pred ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCC-CCCceeeecc
Confidence 777777655432211111222233 2333332 23466778887766555555678999998887554 4457999999
Q ss_pred CCcEEEEec
Q 007283 346 DGLIVKWIQ 354 (609)
Q Consensus 346 dg~i~~W~~ 354 (609)
|..+|.|..
T Consensus 417 D~raRFWyr 425 (430)
T KOG0640|consen 417 DFRARFWYR 425 (430)
T ss_pred cceeeeeee
Confidence 999999943
No 65
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.2e-29 Score=219.66 Aligned_cols=343 Identities=21% Similarity=0.298 Sum_probs=246.5
Q ss_pred EEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEE
Q 007283 161 IATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVS 240 (609)
Q Consensus 161 i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~ 240 (609)
|++.-.++++. +...+.+.||++.|..++-......+.+++.|.+.+||.++++.++.++ .||.+.|+++.
T Consensus 127 ivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y---~GH~GSVNsik 197 (481)
T KOG0300|consen 127 IVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATY---TGHTGSVNSIK 197 (481)
T ss_pred heeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeee---cccccceeeEE
Confidence 55544554432 2455678899999999988777778999999999999999999998776 49999999999
Q ss_pred ECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEE--cCCeEEEEEcCC-cEEEEeCCCCCCCc
Q 007283 241 WSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW--QNDFLVIVSLGG-TISIFSANDLEKSP 317 (609)
Q Consensus 241 ~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g-~i~~~~~~~~~~~~ 317 (609)
|+|.+.+++++|.|++..||.....- ......-...... ++. ..+.. +.+.--....|| +|+ .+.
T Consensus 198 fh~s~~L~lTaSGD~taHIW~~av~~-~vP~~~a~~~hSs--EeE-~e~sDe~~~d~d~~~~sD~~tiR--------vPl 265 (481)
T KOG0300|consen 198 FHNSGLLLLTASGDETAHIWKAAVNW-EVPSNNAPSDHSS--EEE-EEHSDEHNRDTDSSEKSDGHTIR--------VPL 265 (481)
T ss_pred eccccceEEEccCCcchHHHHHhhcC-cCCCCCCCCCCCc--hhh-hhcccccccccccccccCCceee--------eee
Confidence 99999999999999999999742110 0000000000000 000 00000 000000001111 111 233
Q ss_pred eeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCC
Q 007283 318 LQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGD 397 (609)
Q Consensus 318 ~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~ 397 (609)
..+.||...|.+..|.. .++.++|++.|.+-.+|+..++......
T Consensus 266 ~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~L---------------------------------- 310 (481)
T KOG0300|consen 266 MRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNIL---------------------------------- 310 (481)
T ss_pred eeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccc----------------------------------
Confidence 56789999998888774 4578999999999999987654211100
Q ss_pred ccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEec
Q 007283 398 QCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIR 477 (609)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~ 477 (609)
.+ +..+.+-++.+|..+++++.+.|.+.|+||.+
T Consensus 311 --------------------------------------tG--------Hd~ELtHcstHptQrLVvTsSrDtTFRLWDFR 344 (481)
T KOG0300|consen 311 --------------------------------------TG--------HDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR 344 (481)
T ss_pred --------------------------------------cC--------cchhccccccCCcceEEEEeccCceeEeccch
Confidence 00 11234455668999999999999999999997
Q ss_pred CCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCe
Q 007283 478 GDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTC 557 (609)
Q Consensus 478 ~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~ 557 (609)
+.+....++++|...|+++.|..|. .+++||.|.++++||+.+..-.+.. ......++.++++..++.+|.--.+..
T Consensus 345 -eaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplAT-IRtdS~~NRvavs~g~~iIAiPhDNRq 421 (481)
T KOG0300|consen 345 -EAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLAT-IRTDSPANRVAVSKGHPIIAIPHDNRQ 421 (481)
T ss_pred -hhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCccee-eecCCccceeEeecCCceEEeccCCce
Confidence 4555678899999999999998665 5789999999999999876655543 346778999999998889999999999
Q ss_pred EEEEEcCCCCCccee--EeccccCCeEEEEEcCCC---eEEEEeCCCcEEEEEccC
Q 007283 558 VIIYEIDKPASSRMT--IKGAHLGGVYGLAFTDEH---SVVSSGEDACVRVWRLTP 608 (609)
Q Consensus 558 v~vw~~~~~~~~~~~--~~~~h~~~v~~~~~s~~~---~l~s~s~D~~i~~W~~~~ 608 (609)
|++||+......++. ...+|.+.|.|++|++++ .|+|+|-|+.+.-|++..
T Consensus 422 vRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 422 VRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred EEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 999999743333332 456899999999999654 589999999999999865
No 66
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8.8e-28 Score=203.42 Aligned_cols=282 Identities=20% Similarity=0.306 Sum_probs=215.2
Q ss_pred eeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEee
Q 007283 182 LSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWD 261 (609)
Q Consensus 182 ~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd 261 (609)
..+..|.++|..+.|+-||++.++++.|.++++|++..+.++.+++ +|...|..++.+.|+..|++++.|+.+.+||
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYs---ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYS---GHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeec---CCCceeeeccccccccccccCCCCceEEEEE
Confidence 3456789999999999999999999999999999999999998874 8999999999999999999999999999999
Q ss_pred cccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEE
Q 007283 262 ISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVIL 341 (609)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 341 (609)
++. ++.. ..+.||...|..+.|+. ....++
T Consensus 88 V~T---Gkv~----------------------------------------------Rr~rgH~aqVNtV~fNe-esSVv~ 117 (307)
T KOG0316|consen 88 VNT---GKVD----------------------------------------------RRFRGHLAQVNTVRFNE-ESSVVA 117 (307)
T ss_pred ccc---Ceee----------------------------------------------eecccccceeeEEEecC-cceEEE
Confidence 973 3332 23457889999999874 447899
Q ss_pred EEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCC
Q 007283 342 SSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYP 421 (609)
Q Consensus 342 t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (609)
+|+.|.++++|+.........+ .+..
T Consensus 118 SgsfD~s~r~wDCRS~s~ePiQ--------ilde---------------------------------------------- 143 (307)
T KOG0316|consen 118 SGSFDSSVRLWDCRSRSFEPIQ--------ILDE---------------------------------------------- 143 (307)
T ss_pred eccccceeEEEEcccCCCCccc--------hhhh----------------------------------------------
Confidence 9999999999976433211111 0000
Q ss_pred cEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECC
Q 007283 422 ELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSP 501 (609)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~ 501 (609)
....+.++.++ ++.+++||-||++|.||++.+.+.. .....+|+|++||+
T Consensus 144 ------------------------a~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~s----Dy~g~pit~vs~s~ 193 (307)
T KOG0316|consen 144 ------------------------AKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSS----DYFGHPITSVSFSK 193 (307)
T ss_pred ------------------------hcCceeEEEec--ccEEEeeccCCcEEEEEeecceeeh----hhcCCcceeEEecC
Confidence 01124444443 6789999999999999998876532 33456999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCc--eEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccC
Q 007283 502 DVSMFASGDVNREAIVWDRVSREVKLKNMLYHTAR--INCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLG 579 (609)
Q Consensus 502 ~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~--i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~ 579 (609)
|++....++.|+++++.|..++++ ++..++|... =..++++....++++||.||.|.+||+-... .+.-+..|+.
T Consensus 194 d~nc~La~~l~stlrLlDk~tGkl-L~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~--~~sk~~~~~~ 270 (307)
T KOG0316|consen 194 DGNCSLASSLDSTLRLLDKETGKL-LKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET--QISKLSVVST 270 (307)
T ss_pred CCCEEEEeeccceeeecccchhHH-HHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccce--eeeeeccCCc
Confidence 999999999999999999877765 4456677643 3566788889999999999999999997543 2333455666
Q ss_pred C-eEEEEEcC-CCeEEEEeCCCcEEEE
Q 007283 580 G-VYGLAFTD-EHSVVSSGEDACVRVW 604 (609)
Q Consensus 580 ~-v~~~~~s~-~~~l~s~s~D~~i~~W 604 (609)
. |.++++.+ ...++++. ++.+..|
T Consensus 271 v~v~dl~~hp~~~~f~~A~-~~~~~~~ 296 (307)
T KOG0316|consen 271 VIVTDLSCHPTMDDFITAT-GHGDLFW 296 (307)
T ss_pred eeEEeeecccCccceeEec-CCceece
Confidence 5 78888874 23344333 3345555
No 67
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.1e-27 Score=202.74 Aligned_cols=285 Identities=20% Similarity=0.261 Sum_probs=227.4
Q ss_pred eEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 007283 138 VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDG 217 (609)
Q Consensus 138 ~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~ 217 (609)
+..+.++.+.|..+.|.-+|.+ .++||.|.++++|+...+.++.++.||...|..++.+.|+..|++++.|+.+.+||+
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred ceeecccccceEEEEEccCCCE-EEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 4567889999999999999986 889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEE
Q 007283 218 KTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLV 297 (609)
Q Consensus 218 ~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (609)
.+|+.+..+ .+|.+.|+.+.|..+...+++||.|.++|+||-+.. ..+.++.
T Consensus 89 ~TGkv~Rr~---rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~-s~ePiQi------------------------ 140 (307)
T KOG0316|consen 89 NTGKVDRRF---RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSR-SFEPIQI------------------------ 140 (307)
T ss_pred ccCeeeeec---ccccceeeEEEecCcceEEEeccccceeEEEEcccC-CCCccch------------------------
Confidence 999999887 489999999999999999999999999999996531 1111111
Q ss_pred EEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeC
Q 007283 298 IVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIE 377 (609)
Q Consensus 298 ~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (609)
+..-...|.++... ...|++||.||++|.++...+.
T Consensus 141 ----------------------ldea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~------------------- 176 (307)
T KOG0316|consen 141 ----------------------LDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGT------------------- 176 (307)
T ss_pred ----------------------hhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecce-------------------
Confidence 11223455555543 3689999999999988653221
Q ss_pred CcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcC
Q 007283 378 EEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAP 457 (609)
Q Consensus 378 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 457 (609)
+..-.+..|++++.+++
T Consensus 177 ---------------------------------------------------------------l~sDy~g~pit~vs~s~ 193 (307)
T KOG0316|consen 177 ---------------------------------------------------------------LSSDYFGHPITSVSFSK 193 (307)
T ss_pred ---------------------------------------------------------------eehhhcCCcceeEEecC
Confidence 00011246899999999
Q ss_pred CCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceE--EEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCC
Q 007283 458 DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVS--VIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTA 535 (609)
Q Consensus 458 ~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~--~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~ 535 (609)
|++...+++-|++||+.|-.++++. +..++|...=. ...++....++++||.||.+++||+.......+ +..|..
T Consensus 194 d~nc~La~~l~stlrLlDk~tGklL--~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk-~~~~~~ 270 (307)
T KOG0316|consen 194 DGNCSLASSLDSTLRLLDKETGKLL--KSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISK-LSVVST 270 (307)
T ss_pred CCCEEEEeeccceeeecccchhHHH--HHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeee-eccCCc
Confidence 9999999999999999999888763 56778876533 345778889999999999999999987765443 444555
Q ss_pred c-eEEEEECCCCcEEEEEeCCCeEEEEE
Q 007283 536 R-INCLAWSPNNSMVATGSLDTCVIIYE 562 (609)
Q Consensus 536 ~-i~~l~~s~d~~~l~s~s~D~~v~vw~ 562 (609)
. |+.++++|--.-+.++.. +.+.+|-
T Consensus 271 v~v~dl~~hp~~~~f~~A~~-~~~~~~~ 297 (307)
T KOG0316|consen 271 VIVTDLSCHPTMDDFITATG-HGDLFWY 297 (307)
T ss_pred eeEEeeecccCccceeEecC-Cceecee
Confidence 5 899999997766666654 3455564
No 68
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.1e-24 Score=209.54 Aligned_cols=493 Identities=16% Similarity=0.161 Sum_probs=324.3
Q ss_pred ccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCe-eEEEecC-CccEEEEEEeeCCCeEEEEecCCCeEEEEeCCC
Q 007283 100 SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTN-VGEFDGH-SRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP 177 (609)
Q Consensus 100 ~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h-~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~ 177 (609)
..+|.++|||.+...|++.-. ...+-+|....+-. ...+.++ .+.|.+++|.+.+ ++-+.+.++.|.-||.-+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt---~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~--RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRT---DGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG--RLFSSGLSGSITEWDLHT 99 (691)
T ss_pred ccceEEEEEeccCCceeeecc---CCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC--eEEeecCCceEEEEeccc
Confidence 457999999999988776432 23456666555432 3345566 4579999999766 588889999999999999
Q ss_pred CceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcE
Q 007283 178 FKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSA 257 (609)
Q Consensus 178 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i 257 (609)
.+....+..-.+.|++++.+|.+..++.|++||.++..+...++....-. ....++.|.+++|+|++..++.|+.||.|
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~-l~rq~sRvLslsw~~~~~~i~~Gs~Dg~I 178 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRS-LMRQKSRVLSLSWNPTGTKIAGGSIDGVI 178 (691)
T ss_pred CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEee-cccccceEEEEEecCCccEEEecccCceE
Confidence 98888888888999999999999999999999988888877666543322 23457899999999999999999999999
Q ss_pred EEeecccCCCCceEEEeccCCCCC-ccceEEEEEE-cCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecC
Q 007283 258 KVWDISEDNHGKLKKTLTPSGSGG-VDDMLVGCLW-QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNI 335 (609)
Q Consensus 258 ~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 335 (609)
++||+..++... +.+....+... -.-.+....+ .++.++++...|++.+|+..... .......|...|.+++..+
T Consensus 179 riwd~~~~~t~~-~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gT-LiqS~~~h~adVl~Lav~~- 255 (691)
T KOG2048|consen 179 RIWDVKSGQTLH-IITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGT-LIQSHSCHDADVLALAVAD- 255 (691)
T ss_pred EEEEcCCCceEE-EeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcc-hhhhhhhhhcceeEEEEcC-
Confidence 999997543221 11111111111 1112222222 47799999999999999976432 2345677999999999865
Q ss_pred CCCEEEEEecCCcEEEEecCcccc---c-eeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCC
Q 007283 336 DPKVILSSSYDGLIVKWIQGIGYG---G-KLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQP 411 (609)
Q Consensus 336 ~~~~~~t~s~dg~i~~W~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~ 411 (609)
++..+.+++.|+.|..+.+..+.. . .....+...+++++..+..+.+++.|..+..-....-.... +......+
T Consensus 256 ~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~--h~~~~~~p 333 (691)
T KOG2048|consen 256 NEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMD--HRQKNLFP 333 (691)
T ss_pred CCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccccCchh--hhcccccc
Confidence 446899999999998886654422 1 11223455677888877788888888776654332211111 11111111
Q ss_pred -ceeEeeccCCcEEEEEecccEEEeeCCee----------eEEec--cCCceeEEEEcCCCCEEEEEeCCCcEEEEEecC
Q 007283 412 -KDLSVALHYPELVLVSTDSGVVLLRGAEV----------VSTIN--LRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRG 478 (609)
Q Consensus 412 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~--~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~ 478 (609)
...........+++.-.+.++.+|+-+.. +..+. -..-+++.+++|+|++++.+.- .+.++|.++.
T Consensus 334 ~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~ 412 (691)
T KOG2048|consen 334 ASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTV-SRTKIYRLQP 412 (691)
T ss_pred ccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeec-cceEEEEecc
Confidence 11111122224444444556666542211 11122 2345889999999999999864 4578888876
Q ss_pred CeeeeeEEEe---cCCCceEEEEECCCCCEEEEEe-CCCeEEEEEccCCceEE-eee--cCCCCceEEEEECCCCcEEEE
Q 007283 479 DTLTEEAVLE---KHRGAVSVIRYSPDVSMFASGD-VNREAIVWDRVSREVKL-KNM--LYHTARINCLAWSPNNSMVAT 551 (609)
Q Consensus 479 ~~~~~~~~~~---~h~~~i~~v~~s~~~~~l~s~s-~d~~v~iwd~~~~~~~~-~~~--~~h~~~i~~l~~s~d~~~l~s 551 (609)
.........+ ...-....+.|+-|+..+...+ .+..+.+.+..+...+. +.+ ..-...|..+..||||+|||.
T Consensus 413 ~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa 492 (691)
T KOG2048|consen 413 DPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAA 492 (691)
T ss_pred CcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEE
Confidence 5432222221 2233567888998888777777 66777777765543221 111 123456999999999999999
Q ss_pred EeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-C-CCeEEEEeCCCcEEEEEc
Q 007283 552 GSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-D-EHSVVSSGEDACVRVWRL 606 (609)
Q Consensus 552 ~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~-~~~l~s~s~D~~i~~W~~ 606 (609)
.+.++.|.+|++..... . .+...-...|++.+|+ + ...|+-+-+|+-+.=+++
T Consensus 493 ~~t~g~I~v~nl~~~~~-~-~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi 547 (691)
T KOG2048|consen 493 ISTRGQIFVYNLETLES-H-LLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDI 547 (691)
T ss_pred EeccceEEEEEccccee-e-cchhccCcceeeeeccccccCcEEEEecCCeEEEEec
Confidence 99999999999976431 1 1111223678999998 3 345665556666666655
No 69
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=7.4e-29 Score=211.67 Aligned_cols=284 Identities=24% Similarity=0.388 Sum_probs=219.1
Q ss_pred EeecccceeEEEECC---CCCEEEEEE-CCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEE
Q 007283 96 FRVLSGRIDDLQWSP---DGLRIVACG-DGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVN 171 (609)
Q Consensus 96 ~~~~~~~v~~~~~sp---dg~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~ 171 (609)
-.+|..+|..++||| ||-+|++.. |++. + +..-+++.-+++|.+|.+.|+++.+..+-. +.|+++.|.+-+
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~p--m--lr~g~tgdwigtfeghkgavw~~~l~~na~-~aasaaadftak 84 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKP--M--LRNGDTGDWIGTFEGHKGAVWSATLNKNAT-RAASAAADFTAK 84 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCc--h--hccCCCCCcEEeeeccCcceeeeecCchhh-hhhhhcccchhh
Confidence 457899999999997 787777654 3332 3 345567788999999999999999987654 689999999999
Q ss_pred EEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEE
Q 007283 172 FYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTA 251 (609)
Q Consensus 172 ~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~ 251 (609)
+||.-++.....| .|+-.|..++|+.|.+.|++|+.++.++|+|.+..+. ......+|++.|..+.|....+.|++.
T Consensus 85 vw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A--pp~E~~ghtg~Ir~v~wc~eD~~iLSS 161 (334)
T KOG0278|consen 85 VWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA--PPKEISGHTGGIRTVLWCHEDKCILSS 161 (334)
T ss_pred hhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCC--CchhhcCCCCcceeEEEeccCceEEee
Confidence 9998877666555 4777899999999999999999999999999876553 233346899999999999988889999
Q ss_pred eCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEE
Q 007283 252 SADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALT 331 (609)
Q Consensus 252 s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~ 331 (609)
+.|++||+||.+ .+...+++.. ...|.++.
T Consensus 162 add~tVRLWD~r---Tgt~v~sL~~-----------------------------------------------~s~VtSlE 191 (334)
T KOG0278|consen 162 ADDKTVRLWDHR---TGTEVQSLEF-----------------------------------------------NSPVTSLE 191 (334)
T ss_pred ccCCceEEEEec---cCcEEEEEec-----------------------------------------------CCCCccee
Confidence 999999999987 3444443321 12344555
Q ss_pred EecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCC
Q 007283 332 VLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQP 411 (609)
Q Consensus 332 ~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~ 411 (609)
++.. ..++|...-+.|..|+.+.-
T Consensus 192 vs~d--G~ilTia~gssV~Fwdaksf------------------------------------------------------ 215 (334)
T KOG0278|consen 192 VSQD--GRILTIAYGSSVKFWDAKSF------------------------------------------------------ 215 (334)
T ss_pred eccC--CCEEEEecCceeEEeccccc------------------------------------------------------
Confidence 5432 35667777788888865320
Q ss_pred ceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCC
Q 007283 412 KDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHR 491 (609)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~ 491 (609)
.+++...+...|.+..++|+...+++|+.|..++-||..++.-... ..++|.
T Consensus 216 ---------------------------~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~-~nkgh~ 267 (334)
T KOG0278|consen 216 ---------------------------GLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS-YNKGHF 267 (334)
T ss_pred ---------------------------cceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeee-cccCCC
Confidence 1112222334477778899999999999999999999987753221 148999
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 007283 492 GAVSVIRYSPDVSMFASGDVNREAIVWDRV 521 (609)
Q Consensus 492 ~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~ 521 (609)
++|.||.|||||...|+||.||++|+|-..
T Consensus 268 gpVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 268 GPVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred CceEEEEECCCCceeeccCCCceEEEEEec
Confidence 999999999999999999999999999743
No 70
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.8e-28 Score=207.98 Aligned_cols=280 Identities=21% Similarity=0.332 Sum_probs=212.5
Q ss_pred EEEEECCC--CCeEEEE------eCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEc---CCeEEEEEcCCcE
Q 007283 237 YAVSWSPD--GKQVLTA------SADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQ---NDFLVIVSLGGTI 305 (609)
Q Consensus 237 ~~l~~spd--~~~l~s~------s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~i 305 (609)
+++.|||- +++.+.. ...|++.|-++...........+. ..+..+...|+ .+++++++.||++
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d------~~D~LfdV~Wse~~e~~~~~a~GDGSL 85 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD------TEDGLFDVAWSENHENQVIAASGDGSL 85 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee------cccceeEeeecCCCcceEEEEecCceE
Confidence 57889983 3332222 235888888885322222223322 23445566676 4578899999999
Q ss_pred EEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEec
Q 007283 306 SIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGF 385 (609)
Q Consensus 306 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (609)
++|+......+...++.|..+|.++.+....+..++++|.|++|++|+.+.....+...
T Consensus 86 rl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~--------------------- 144 (311)
T KOG0277|consen 86 RLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN--------------------- 144 (311)
T ss_pred EEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeec---------------------
Confidence 99998777777788899999999999987777888999999999999764321100000
Q ss_pred cceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcC-CCCEEEE
Q 007283 386 DNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAP-DGSEAII 464 (609)
Q Consensus 386 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~g~~l~~ 464 (609)
.+...|...+++| .+..+++
T Consensus 145 -----------------------------------------------------------gh~~~Iy~a~~sp~~~nlfas 165 (311)
T KOG0277|consen 145 -----------------------------------------------------------GHNSCIYQAAFSPHIPNLFAS 165 (311)
T ss_pred -----------------------------------------------------------CCccEEEEEecCCCCCCeEEE
Confidence 0112355566777 5678999
Q ss_pred EeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECC-CCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEEC
Q 007283 465 GSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSP-DVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWS 543 (609)
Q Consensus 465 gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s 543 (609)
+|.|+++++||++.... ...+..|...|.|..|+. |-..+++|+.|+.||.||+.+.+.++.++.+|.-.|..++||
T Consensus 166 ~Sgd~~l~lwdvr~~gk--~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~S 243 (311)
T KOG0277|consen 166 ASGDGTLRLWDVRSPGK--FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFS 243 (311)
T ss_pred ccCCceEEEEEecCCCc--eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecC
Confidence 99999999999975432 234788999999999985 467899999999999999988877788889999999999999
Q ss_pred CCC-cEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc--CCCeEEEEeCCCcEEEEE
Q 007283 544 PNN-SMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT--DEHSVVSSGEDACVRVWR 605 (609)
Q Consensus 544 ~d~-~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s--~~~~l~s~s~D~~i~~W~ 605 (609)
|.. ..||+++.|-++++||...+- ..+.....|+.-|..+.|| +...++++|.|..+.+|+
T Consensus 244 ph~~~lLaSasYDmT~riw~~~~~d-s~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 244 PHHASLLASASYDMTVRIWDPERQD-SAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred cchhhHhhhccccceEEecccccch-hhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 965 689999999999999987543 2334445699999999999 678999999999999998
No 71
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=1.2e-27 Score=224.32 Aligned_cols=313 Identities=20% Similarity=0.283 Sum_probs=223.5
Q ss_pred CCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc----cccccCcCCCCccceEEEEECCCCCeEEEEe
Q 007283 177 PFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTAD----KIGELSPEDGHKGSVYAVSWSPDGKQVLTAS 252 (609)
Q Consensus 177 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s 252 (609)
+......+.+|...|+++++.|.|..|++|+.|-+|++||+..-. ....+.+... ..|+++.|++.|..|++.+
T Consensus 156 P~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~--h~i~sl~ys~Tg~~iLvvs 233 (641)
T KOG0772|consen 156 PGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCET--HQINSLQYSVTGDQILVVS 233 (641)
T ss_pred CccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccc--cccceeeecCCCCeEEEEe
Confidence 455667788999999999999999999999999999999976432 2233333334 4699999999999999999
Q ss_pred CCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEE
Q 007283 253 ADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTV 332 (609)
Q Consensus 253 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~ 332 (609)
.....+++|.. +..+-.+. .++++ |-+ ....+||...+++.+|
T Consensus 234 g~aqakl~DRd----G~~~~e~~----------------KGDQY----------I~D-------m~nTKGHia~lt~g~w 276 (641)
T KOG0772|consen 234 GSAQAKLLDRD----GFEIVEFS----------------KGDQY----------IRD-------MYNTKGHIAELTCGCW 276 (641)
T ss_pred cCcceeEEccC----Cceeeeee----------------ccchh----------hhh-------hhccCCceeeeecccc
Confidence 99999999965 22221111 11111 111 1235789999999999
Q ss_pred ecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCc
Q 007283 333 LNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPK 412 (609)
Q Consensus 333 ~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~ 412 (609)
++.+...++|++.||++|+|+.+... ++...+.. ..
T Consensus 277 hP~~k~~FlT~s~DgtlRiWdv~~~k---------~q~qVik~-------------------k~---------------- 312 (641)
T KOG0772|consen 277 HPDNKEEFLTCSYDGTLRIWDVNNTK---------SQLQVIKT-------------------KP---------------- 312 (641)
T ss_pred ccCcccceEEecCCCcEEEEecCCch---------hheeEEee-------------------cc----------------
Confidence 98888899999999999999875421 01100000 00
Q ss_pred eeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeee-eEEEecCC
Q 007283 413 DLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTE-EAVLEKHR 491 (609)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~-~~~~~~h~ 491 (609)
.. ..+-+++.++++|||+++|+|+.||.|.+|+..+..... -.+-++|.
T Consensus 313 ----------------~~--------------g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~ 362 (641)
T KOG0772|consen 313 ----------------AG--------------GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHL 362 (641)
T ss_pred ----------------CC--------------CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccC
Confidence 00 012357889999999999999999999999975433221 23446788
Q ss_pred C--ceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecC--CCCceEEEEECCCCcEEEEEe------CCCeEEEE
Q 007283 492 G--AVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLY--HTARINCLAWSPNNSMVATGS------LDTCVIIY 561 (609)
Q Consensus 492 ~--~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~--h~~~i~~l~~s~d~~~l~s~s------~D~~v~vw 561 (609)
. .|+||+||+||++|+|-+.|.++++||+......+....+ ....-+.++||||.++|+||. .-+++.+|
T Consensus 363 ~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~ 442 (641)
T KOG0772|consen 363 PGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFF 442 (641)
T ss_pred CCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEE
Confidence 7 8999999999999999999999999998776554432221 234568899999999999986 34678888
Q ss_pred EcCCCCCcceeEeccccCCeEEEEEcCC-CeEEEEeCCCcEEEE
Q 007283 562 EIDKPASSRMTIKGAHLGGVYGLAFTDE-HSVVSSGEDACVRVW 604 (609)
Q Consensus 562 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~l~s~s~D~~i~~W 604 (609)
|-.+. ....-..-....|-.+.|.+. +.|+.++.||+++++
T Consensus 443 d~~t~--d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 443 DRMTL--DTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred eccce--eeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 75431 112212223556777888853 668889999999876
No 72
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1e-27 Score=205.36 Aligned_cols=286 Identities=21% Similarity=0.344 Sum_probs=210.9
Q ss_pred eeEEEECC--CCCEEEEEECCCCc-ceEEEEEcCC--CCeeEEEe--cCCccEEEEEEeeCCCeEEEEecCCCeEEEEeC
Q 007283 103 IDDLQWSP--DGLRIVACGDGKGK-SLVRAFMWDS--GTNVGEFD--GHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEG 175 (609)
Q Consensus 103 v~~~~~sp--dg~~l~~~~~~~~~-~~~~~~~~~~--~~~~~~~~--~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~ 175 (609)
-.++.||| +++..++++..-+. ...++++.+. ++.+.++. .-.+.+..++|++....++++++.||.+++||.
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 36789999 55555544321000 0123444443 33344333 235678899999998889999999999999995
Q ss_pred C-CCceeeeccCcccceEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECC-CCCeEEEEe
Q 007283 176 P-PFKFKLSHRGHSNFVNCVRFSPD-GSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSP-DGKQVLTAS 252 (609)
Q Consensus 176 ~-~~~~~~~~~~h~~~v~~l~~s~d-g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~l~s~s 252 (609)
. +.+.+..++.|.+.|.++.|++- ++.+++++.|++|++|+...++.+.++ .||...|+...|+| ...+++++|
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf---~gh~~~Iy~a~~sp~~~nlfas~S 167 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF---NGHNSCIYQAAFSPHIPNLFASAS 167 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee---cCCccEEEEEecCCCCCCeEEEcc
Confidence 4 44567788999999999999986 457888899999999999999888886 48999999999999 567999999
Q ss_pred CCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEE
Q 007283 253 ADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTV 332 (609)
Q Consensus 253 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~ 332 (609)
.|+++++||++.. ++. ..+..|..++.++.+
T Consensus 168 gd~~l~lwdvr~~--gk~-----------------------------------------------~~i~ah~~Eil~cdw 198 (311)
T KOG0277|consen 168 GDGTLRLWDVRSP--GKF-----------------------------------------------MSIEAHNSEILCCDW 198 (311)
T ss_pred CCceEEEEEecCC--Cce-----------------------------------------------eEEEeccceeEeecc
Confidence 9999999998631 211 113346556666666
Q ss_pred ecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCc
Q 007283 333 LNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPK 412 (609)
Q Consensus 333 ~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~ 412 (609)
+..+..+++||+.|+.|+.||
T Consensus 199 ~ky~~~vl~Tg~vd~~vr~wD----------------------------------------------------------- 219 (311)
T KOG0277|consen 199 SKYNHNVLATGGVDNLVRGWD----------------------------------------------------------- 219 (311)
T ss_pred cccCCcEEEecCCCceEEEEe-----------------------------------------------------------
Confidence 554555566666555555554
Q ss_pred eeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCC
Q 007283 413 DLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRG 492 (609)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~ 492 (609)
++.-. ....++.+|.-
T Consensus 220 ---------------------------------------------------------------ir~~r-~pl~eL~gh~~ 235 (311)
T KOG0277|consen 220 ---------------------------------------------------------------IRNLR-TPLFELNGHGL 235 (311)
T ss_pred ---------------------------------------------------------------hhhcc-ccceeecCCce
Confidence 33211 12344567888
Q ss_pred ceEEEEECCC-CCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECC-CCcEEEEEeCCCeEEEEEc
Q 007283 493 AVSVIRYSPD-VSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSP-NNSMVATGSLDTCVIIYEI 563 (609)
Q Consensus 493 ~i~~v~~s~~-~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~-d~~~l~s~s~D~~v~vw~~ 563 (609)
.|..|+|||- -..|||++.|.+++|||.+.+.-.+.....|+..+..++||+ +..++|+.+-|..+.||+.
T Consensus 236 AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 236 AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 8999999998 468999999999999998866554555667999999999998 5679999999999999983
No 73
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.4e-28 Score=240.43 Aligned_cols=302 Identities=20% Similarity=0.313 Sum_probs=199.5
Q ss_pred cCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCC
Q 007283 55 EHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDS 134 (609)
Q Consensus 55 ~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 134 (609)
.|++.|.++.|||||+|||+|+.|+-||||.+...+... ...+.-.++-|. +.+-+.... ..-.-.-..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~----~~~~~~~~~~~~-----~~~~s~~~p--~~s~~~~~~ 333 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMR----VAEGDSSCMYFE-----YNANSQIEP--STSSEEKIS 333 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhc----ccccccchhhhh-----hhhccccCc--ccccccccc
Confidence 899999999999999999999999999999987644311 111111111000 000000000 000000000
Q ss_pred CCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEE
Q 007283 135 GTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII 214 (609)
Q Consensus 135 ~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~i 214 (609)
+.. ..... .....+ ...|... ..+. -+....+.||.+.|..|.||.++ +|++++.|+++++
T Consensus 334 ~~~-s~~~~-~~~s~~-~~~p~~~------------f~f~---ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRL 394 (712)
T KOG0283|consen 334 SRT-SSSRK-GSQSPC-VLLPLKA------------FVFS---EKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRL 394 (712)
T ss_pred ccc-ccccc-ccCCcc-ccCCCcc------------cccc---ccchhhhhccchhheecccccCC-eeEeccccccEEe
Confidence 000 00000 000000 0011110 0111 13456789999999999999886 7999999999999
Q ss_pred EeCCCCccccccCcCCCCccceEEEEECC-CCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcC
Q 007283 215 YDGKTADKIGELSPEDGHKGSVYAVSWSP-DGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQN 293 (609)
Q Consensus 215 wd~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (609)
|++...+++..+ .|..-|+|++|+| |.+||++||-|+.+|||++...
T Consensus 395 Wh~~~~~CL~~F----~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~---------------------------- 442 (712)
T KOG0283|consen 395 WHPGRKECLKVF----SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDK---------------------------- 442 (712)
T ss_pred ecCCCcceeeEE----ecCCeeEEEEecccCCCcEeecccccceEEeecCcC----------------------------
Confidence 999999999887 5999999999999 7789999999999999987410
Q ss_pred CeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEe
Q 007283 294 DFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCF 373 (609)
Q Consensus 294 ~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~ 373 (609)
.|..|.-
T Consensus 443 ------------------------------------------------------~Vv~W~D------------------- 449 (712)
T KOG0283|consen 443 ------------------------------------------------------KVVDWND------------------- 449 (712)
T ss_pred ------------------------------------------------------eeEeehh-------------------
Confidence 1112200
Q ss_pred eeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEE
Q 007283 374 AAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTAS 453 (609)
Q Consensus 374 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (609)
++.-|+++
T Consensus 450 ------------------------------------------------------------------------l~~lITAv 457 (712)
T KOG0283|consen 450 ------------------------------------------------------------------------LRDLITAV 457 (712)
T ss_pred ------------------------------------------------------------------------hhhhheeE
Confidence 00127888
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecC------CCceEEEEECCCCC-EEEEEeCCCeEEEEEccCCceE
Q 007283 454 AIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKH------RGAVSVIRYSPDVS-MFASGDVNREAIVWDRVSREVK 526 (609)
Q Consensus 454 ~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h------~~~i~~v~~s~~~~-~l~s~s~d~~v~iwd~~~~~~~ 526 (609)
++.|||++.++|+.+|..++|+....++.......-| ...|+.+.|.|... .+++.+.|..|||+|.......
T Consensus 458 cy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv 537 (712)
T KOG0283|consen 458 CYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLV 537 (712)
T ss_pred EeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhh
Confidence 9999999999999999999999887665433222111 22799999987644 4777789999999998554443
Q ss_pred EeeecCC-C-CceEEEEECCCCcEEEEEeCCCeEEEEEcC
Q 007283 527 LKNMLYH-T-ARINCLAWSPNNSMVATGSLDTCVIIYEID 564 (609)
Q Consensus 527 ~~~~~~h-~-~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~ 564 (609)
.+ ++++ + ..-....|+.||++|++|+.|..|.+|+++
T Consensus 538 ~K-fKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 538 HK-FKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred hh-hcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 32 3332 2 223467899999999999999999999984
No 74
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=8.5e-26 Score=190.14 Aligned_cols=296 Identities=24% Similarity=0.361 Sum_probs=205.1
Q ss_pred cccceEEEEEcCCCCEEEEEeCCCcEEEEe------CCCCccccc------cCcCCCCccceEEEEECCCCCeEEEEeCC
Q 007283 187 HSNFVNCVRFSPDGSKFISVSSDKKGIIYD------GKTADKIGE------LSPEDGHKGSVYAVSWSPDGKQVLTASAD 254 (609)
Q Consensus 187 h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd------~~~~~~~~~------~~~~~~h~~~V~~l~~spd~~~l~s~s~d 254 (609)
..+.|.+++|+|.|.+.++|+..++.+|.- .+.+..... ..-.+.|.+.|+|.+|+|+|++|++|+.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 456799999999999999999999988863 222221111 11134689999999999999999999999
Q ss_pred CcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEec
Q 007283 255 KSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLN 334 (609)
Q Consensus 255 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 334 (609)
.+|++-..+.+.. .......++.-|.+.|..++|.+
T Consensus 111 k~ik~l~fn~dt~--------------------------------------------~~~g~dle~nmhdgtirdl~fld 146 (350)
T KOG0641|consen 111 KTIKVLPFNADTC--------------------------------------------NATGHDLEFNMHDGTIRDLAFLD 146 (350)
T ss_pred ceEEEEecccccc--------------------------------------------cccCcceeeeecCCceeeeEEec
Confidence 9999876542100 00112245667888899998873
Q ss_pred ---CCCCEEEEEe-cCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCC
Q 007283 335 ---IDPKVILSSS-YDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQ 410 (609)
Q Consensus 335 ---~~~~~~~t~s-~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~ 410 (609)
..+.++++++ .|..|.+=+...+..
T Consensus 147 ~~~s~~~il~s~gagdc~iy~tdc~~g~~--------------------------------------------------- 175 (350)
T KOG0641|consen 147 DPESGGAILASAGAGDCKIYITDCGRGQG--------------------------------------------------- 175 (350)
T ss_pred CCCcCceEEEecCCCcceEEEeecCCCCc---------------------------------------------------
Confidence 2234555554 233333322221110
Q ss_pred CceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecC
Q 007283 411 PKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKH 490 (609)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h 490 (609)
+.+.++-.| -+.+ -++-+|-.+++|++|.+||+||++-.......-...|
T Consensus 176 ------------~~a~sghtg-----------------hila-lyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~ 225 (350)
T KOG0641|consen 176 ------------FHALSGHTG-----------------HILA-LYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFH 225 (350)
T ss_pred ------------ceeecCCcc-----------------cEEE-EEEecCcEEEccCCCceEEEEeeeccceeeeccCccc
Confidence 000000000 0111 1234678899999999999999976544321111223
Q ss_pred -----CCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCC
Q 007283 491 -----RGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDK 565 (609)
Q Consensus 491 -----~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~ 565 (609)
...|.+|+..|.|+++++|-.|..+.+||+..++. +..+..|+..|.|+.|||...+|.+++.|..|++=|+.-
T Consensus 226 ~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~-iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 226 DGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM-IQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred CCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce-eeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence 25699999999999999999999999999987764 455778999999999999999999999999999999863
Q ss_pred C-CCcc-eeEeccccCCeEEEEEcCC-CeEEEEeCCCcEEEEEccC
Q 007283 566 P-ASSR-MTIKGAHLGGVYGLAFTDE-HSVVSSGEDACVRVWRLTP 608 (609)
Q Consensus 566 ~-~~~~-~~~~~~h~~~v~~~~~s~~-~~l~s~s~D~~i~~W~~~~ 608 (609)
. ..++ ..+...|...+-.++|.+. --++|.|+|+++.+|.+.+
T Consensus 305 dla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~~ 350 (350)
T KOG0641|consen 305 DLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALNG 350 (350)
T ss_pred chhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccCC
Confidence 2 1111 2334569999999999954 4589999999999998753
No 75
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.1e-27 Score=236.73 Aligned_cols=289 Identities=24% Similarity=0.305 Sum_probs=191.7
Q ss_pred CCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEE-Eec-----cCCCCCccceEEEE-EEcCC--eEEEEEc
Q 007283 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKK-TLT-----PSGSGGVDDMLVGC-LWQND--FLVIVSL 301 (609)
Q Consensus 231 ~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~-~~~~~--~~~~~~~ 301 (609)
+|.+.|.++.||+||+|||+||.|+.||||.+.+.....+-. ... ......+......- .-... ..-....
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 799999999999999999999999999999986421100000 000 00000000000000 00000 0000001
Q ss_pred CCcEEEEe--CCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCc
Q 007283 302 GGTISIFS--ANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEE 379 (609)
Q Consensus 302 ~g~i~~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (609)
...+.+-. +.-...+...+.||...|..+.|+.. ++|+++|.|.|||+|.+...
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~---------------------- 400 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRK---------------------- 400 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCc----------------------
Confidence 11111100 01113445678999999999999744 79999999999999965421
Q ss_pred EEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcC-C
Q 007283 380 IVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAP-D 458 (609)
Q Consensus 380 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~ 458 (609)
+++..+.|..-|+|++|+| |
T Consensus 401 -----------------------------------------------------------~CL~~F~HndfVTcVaFnPvD 421 (712)
T KOG0283|consen 401 -----------------------------------------------------------ECLKVFSHNDFVTCVAFNPVD 421 (712)
T ss_pred -----------------------------------------------------------ceeeEEecCCeeEEEEecccC
Confidence 1122233334599999999 8
Q ss_pred CCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEee--------e
Q 007283 459 GSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKN--------M 530 (609)
Q Consensus 459 g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~--------~ 530 (609)
.++|++|+-|+.+|||++....... ...-...|++++|+|||++.+.|+.+|.+++|+....+..... -
T Consensus 422 DryFiSGSLD~KvRiWsI~d~~Vv~---W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 422 DRYFISGSLDGKVRLWSISDKKVVD---WNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK 498 (712)
T ss_pred CCcEeecccccceEEeecCcCeeEe---ehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence 8999999999999999997665422 2233479999999999999999999999999997765543221 1
Q ss_pred cCCCCceEEEEECCCCc-EEEEEeCCCeEEEEEcCCCCCcceeEeccccCC-eEEEEEc-CCCeEEEEeCCCcEEEEEcc
Q 007283 531 LYHTARINCLAWSPNNS-MVATGSLDTCVIIYEIDKPASSRMTIKGAHLGG-VYGLAFT-DEHSVVSSGEDACVRVWRLT 607 (609)
Q Consensus 531 ~~h~~~i~~l~~s~d~~-~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~-v~~~~~s-~~~~l~s~s~D~~i~~W~~~ 607 (609)
..|. .||.+.|.|... .+...+.|..|+|+|..... ....+++.|... -..-.|+ |+++||++|.|..|.+|+.+
T Consensus 499 ~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~-lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 499 KQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD-LVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred ccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchh-hhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 1233 799999997543 46667789999999985422 334455555443 3456677 99999999999999999974
No 76
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.6e-27 Score=218.51 Aligned_cols=289 Identities=18% Similarity=0.245 Sum_probs=226.9
Q ss_pred eeecCCCccCcCceeEEeecCCCCe-EEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEE
Q 007283 6 ETYTCVPSTERGRGILISGHPKSNS-ILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIW 84 (609)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vW 84 (609)
.+++.++.+++ ....|.++|+.-+ ++.+.+-.+.||+..+......+...++.|.++.|..||++||.|+..|.|+|+
T Consensus 17 ~~~~~~~ke~~-~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vf 95 (487)
T KOG0310|consen 17 ETFPPVHKEHN-SVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVF 95 (487)
T ss_pred hcccccccccC-cceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEe
Confidence 35566777766 4468999997543 667778899999998877777677778999999999999999999999999999
Q ss_pred cCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEe
Q 007283 85 GAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATC 164 (609)
Q Consensus 85 d~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~ 164 (609)
|..+ +...+.+..|..+|....|+|++..+++.|++. ..+++|+.++......+.+|++.|.+.+|+|..+..++||
T Consensus 96 D~k~-r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd--~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtG 172 (487)
T KOG0310|consen 96 DMKS-RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDD--KVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTG 172 (487)
T ss_pred cccc-HHHHHHHhhccCceeEEEecccCCeEEEecCCC--ceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEec
Confidence 9544 434456888999999999999877666665433 3678888888776668899999999999999988889999
Q ss_pred cCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCC
Q 007283 165 GEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD 244 (609)
Q Consensus 165 ~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd 244 (609)
|+||.|++||.........-..|..+|..+.|.|.|+.||+|+. ..+++||..+|...... ...|...|+|+++..+
T Consensus 173 sYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~--~~~H~KtVTcL~l~s~ 249 (487)
T KOG0310|consen 173 SYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTS--MFNHNKTVTCLRLASD 249 (487)
T ss_pred CCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhh--hhcccceEEEEEeecC
Confidence 99999999998776333333468999999999999999998865 57999999866544332 1249999999999999
Q ss_pred CCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEE
Q 007283 245 GKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIF 308 (609)
Q Consensus 245 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ 308 (609)
+..|+++|-|+++++||+. ..+.+..+...++ + +.++....+..+++|-.+|.+.+-
T Consensus 250 ~~rLlS~sLD~~VKVfd~t---~~Kvv~s~~~~~p--v--Lsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 250 STRLLSGSLDRHVKVFDTT---NYKVVHSWKYPGP--V--LSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred CceEeecccccceEEEEcc---ceEEEEeeecccc--e--eeEEecCCCceEEEecccceeeee
Confidence 9999999999999999975 3566666554321 1 112233345677888888876555
No 77
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.6e-27 Score=208.96 Aligned_cols=325 Identities=18% Similarity=0.288 Sum_probs=236.8
Q ss_pred cccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEE
Q 007283 49 QVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVR 128 (609)
Q Consensus 49 ~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~ 128 (609)
.++.|.||++.|..++.......+.++++|.|.+||.++++.++ .++.+|.+.|.++.|+|.+..+++.+.+.. ..
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL-~~Y~GH~GSVNsikfh~s~~L~lTaSGD~t---aH 215 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACL-ATYTGHTGSVNSIKFHNSGLLLLTASGDET---AH 215 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccce-eeecccccceeeEEeccccceEEEccCCcc---hH
Confidence 45678999999999999888889999999999999999998865 468999999999999999988777654332 22
Q ss_pred EEE----cCCCCeeEEEecCCcc--EEEEEEeeCCCeEEEEe--cCC-CeEEEEeCCCCceeeeccCcccceEEEEEcCC
Q 007283 129 AFM----WDSGTNVGEFDGHSRR--VLSCAFKPSRPFRIATC--GED-FLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPD 199 (609)
Q Consensus 129 ~~~----~~~~~~~~~~~~h~~~--v~~~~~~p~~~~~i~t~--~~d-~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~d 199 (609)
+|. |....+.. -.+|+.. +.+- ..+.+ ...+ ..| ++|++ ....+.||...|.+..|...
T Consensus 216 IW~~av~~~vP~~~a-~~~hSsEeE~e~s--De~~~--d~d~~~~sD~~tiRv-------Pl~~ltgH~~vV~a~dWL~g 283 (481)
T KOG0300|consen 216 IWKAAVNWEVPSNNA-PSDHSSEEEEEHS--DEHNR--DTDSSEKSDGHTIRV-------PLMRLTGHRAVVSACDWLAG 283 (481)
T ss_pred HHHHhhcCcCCCCCC-CCCCCchhhhhcc--ccccc--ccccccccCCceeee-------eeeeeeccccceEehhhhcC
Confidence 332 33322211 1223221 1111 11111 1111 112 22322 34567899999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCC
Q 007283 200 GSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGS 279 (609)
Q Consensus 200 g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~ 279 (609)
|+.+++++.|.+..+||+++++.+..+ .||....+.++-+|..+++++.|.|.+.|+||+++. ++
T Consensus 284 g~Q~vTaSWDRTAnlwDVEtge~v~~L---tGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea-----I~------- 348 (481)
T KOG0300|consen 284 GQQMVTASWDRTANLWDVETGEVVNIL---TGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA-----IQ------- 348 (481)
T ss_pred cceeeeeeccccceeeeeccCceeccc---cCcchhccccccCCcceEEEEeccCceeEeccchhh-----cc-------
Confidence 999999999999999999999988776 499999999999999999999999999999998621 10
Q ss_pred CCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCcccc
Q 007283 280 GGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYG 359 (609)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~ 359 (609)
....++||...|+++.|... ..+++|++|.+|++|++.+...
T Consensus 349 ------------------------------------sV~VFQGHtdtVTS~vF~~d--d~vVSgSDDrTvKvWdLrNMRs 390 (481)
T KOG0300|consen 349 ------------------------------------SVAVFQGHTDTVTSVVFNTD--DRVVSGSDDRTVKVWDLRNMRS 390 (481)
T ss_pred ------------------------------------eeeeecccccceeEEEEecC--CceeecCCCceEEEeeeccccC
Confidence 11246789999999998743 5699999999999998753210
Q ss_pred ceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCe
Q 007283 360 GKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAE 439 (609)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (609)
+ +.
T Consensus 391 ---------p----------lA---------------------------------------------------------- 393 (481)
T KOG0300|consen 391 ---------P----------LA---------------------------------------------------------- 393 (481)
T ss_pred ---------c----------ce----------------------------------------------------------
Confidence 0 00
Q ss_pred eeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeE--EEecCCCceEEEEECCCC--CEEEEEeCCCeE
Q 007283 440 VVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEA--VLEKHRGAVSVIRYSPDV--SMFASGDVNREA 515 (609)
Q Consensus 440 ~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~--~~~~h~~~i~~v~~s~~~--~~l~s~s~d~~v 515 (609)
.+....+++-++++-.+..+|+--.+..||+||+.+..+.... .-++|...|.|++|..+- .-|.+++.|+.+
T Consensus 394 ---TIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v 470 (481)
T KOG0300|consen 394 ---TIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMV 470 (481)
T ss_pred ---eeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCccccccccccccee
Confidence 0001123555666766777788778889999999877653222 346899999999998663 457789999999
Q ss_pred EEEEccC
Q 007283 516 IVWDRVS 522 (609)
Q Consensus 516 ~iwd~~~ 522 (609)
.-|.+..
T Consensus 471 ~gW~in~ 477 (481)
T KOG0300|consen 471 AGWKINT 477 (481)
T ss_pred eeeEecc
Confidence 9998643
No 78
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=5.7e-27 Score=239.62 Aligned_cols=311 Identities=24% Similarity=0.374 Sum_probs=211.9
Q ss_pred cC-CCCcEEEEECCCCCEEEEEe--CCCcEEEEcCCCC-----------ceeeEEEeecccceeEEEECCCCCEEEEEEC
Q 007283 55 EH-AYPATVARFSPNGEWIASAD--VSGTVRIWGAHND-----------HVLKKEFRVLSGRIDDLQWSPDGLRIVACGD 120 (609)
Q Consensus 55 ~h-~~~v~~~~~sp~g~~las~~--~d~~i~vWd~~~~-----------~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~ 120 (609)
+| ...|..+..+|||..+|||+ .|+.++||..+.- .........|.+.|.++.|||||++|++.+|
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD 89 (942)
T ss_pred ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence 45 45689999999999999999 8999999976531 0011223344555666666666666555554
Q ss_pred CCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCC
Q 007283 121 GKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDG 200 (609)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg 200 (609)
++ .+..|+... . +.+. .+-+.|.- -+.+.++....+.+|...|..++|+|++
T Consensus 90 D~-----~v~iW~~~~-~----------------~~~~-~fgs~g~~-----~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~ 141 (942)
T KOG0973|consen 90 DR-----LVMIWERAE-I----------------GSGT-VFGSTGGA-----KNVESWKVVSILRGHDSDVLDVNWSPDD 141 (942)
T ss_pred cc-----eEEEeeecc-c----------------CCcc-cccccccc-----cccceeeEEEEEecCCCccceeccCCCc
Confidence 32 244443321 0 0000 01110000 1234456777899999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCC
Q 007283 201 SKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSG 280 (609)
Q Consensus 201 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 280 (609)
.+|++++.|++|.||+.++.+++..+ .+|.+.|..+.|.|-|+|||+-+.|++|++|+... .+ +.+..
T Consensus 142 ~~lvS~s~DnsViiwn~~tF~~~~vl---~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d--w~-i~k~I------ 209 (942)
T KOG0973|consen 142 SLLVSVSLDNSVIIWNAKTFELLKVL---RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD--WG-IEKSI------ 209 (942)
T ss_pred cEEEEecccceEEEEccccceeeeee---ecccccccceEECCccCeeeeecCCceEEEEEccc--ce-eeEee------
Confidence 99999999999999999999877766 48999999999999999999999999999998542 10 00000
Q ss_pred CccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccc
Q 007283 281 GVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGG 360 (609)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~ 360 (609)
.++.+.+ ...
T Consensus 210 ----------------------------------------t~pf~~~-------~~~----------------------- 219 (942)
T KOG0973|consen 210 ----------------------------------------TKPFEES-------PLT----------------------- 219 (942)
T ss_pred ----------------------------------------ccchhhC-------CCc-----------------------
Confidence 0000000 000
Q ss_pred eeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCee
Q 007283 361 KLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEV 440 (609)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (609)
T Consensus 220 -------------------------------------------------------------------------------- 219 (942)
T KOG0973|consen 220 -------------------------------------------------------------------------------- 219 (942)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEeccCCceeEEEEcCCCCEEEEEeC----CCcEEEEEecCCeeeeeEEEecCCCceEEEEECCC------C-------
Q 007283 441 VSTINLRFPVTASAIAPDGSEAIIGSQ----DGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPD------V------- 503 (609)
Q Consensus 441 ~~~~~~~~~~~~~~~sp~g~~l~~gs~----dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~------~------- 503 (609)
.-+.-+.+||||++|++... -.++.|.+-.+. .....+-+|.+++.++.|+|. .
T Consensus 220 -------T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tW--k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~ 290 (942)
T KOG0973|consen 220 -------TFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTW--KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQP 290 (942)
T ss_pred -------ceeeecccCCCcCeecchhhccCCcceeEEEecCCc--eeeeeeecCCCceEEEEeChHHhccccccCCccCC
Confidence 00223456888888877633 225677765333 335678899999999999984 1
Q ss_pred ----CEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcC
Q 007283 504 ----SMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEID 564 (609)
Q Consensus 504 ----~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~ 564 (609)
..+|+||+|+++-||.....+.........+..|..++|||||..|+..|.||+|.+...+
T Consensus 291 ~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 291 NCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred CcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence 1689999999999999754433221112245789999999999999999999999999875
No 79
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2e-26 Score=213.58 Aligned_cols=306 Identities=20% Similarity=0.325 Sum_probs=227.5
Q ss_pred ccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEE
Q 007283 50 VSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRA 129 (609)
Q Consensus 50 ~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~ 129 (609)
...+..|.-++.+++++||.+++.+++.|++|.=|++.+++........ ..|...
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~--~ev~k~----------------------- 189 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIER--DEVLKS----------------------- 189 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCccccccccc--chhhhh-----------------------
Confidence 4557889999999999999999999999999999999887532111000 000000
Q ss_pred EEcCCCCeeEEE-ecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeC
Q 007283 130 FMWDSGTNVGEF-DGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSS 208 (609)
Q Consensus 130 ~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~ 208 (609)
.+..+..- ++|...+.+++.+||+.+ ||+|+.|..+.+|+..+.+....+.+|.+.|.+++|-.....|.+++.
T Consensus 190 ----~~~~~k~~r~~h~keil~~avS~Dgky-latgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~ 264 (479)
T KOG0299|consen 190 ----HGNPLKESRKGHVKEILTLAVSSDGKY-LATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASA 264 (479)
T ss_pred ----ccCCCCcccccccceeEEEEEcCCCcE-EEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeec
Confidence 00000001 489999999999999986 999999999999999999999999999999999999887778999999
Q ss_pred CCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEE
Q 007283 209 DKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVG 288 (609)
Q Consensus 209 d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (609)
|..+++|+......+.++. ||.+.|.++.....++.+..|+.|+++++|++.+..
T Consensus 265 Drsvkvw~~~~~s~vetly---GHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees---------------------- 319 (479)
T KOG0299|consen 265 DRSVKVWSIDQLSYVETLY---GHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES---------------------- 319 (479)
T ss_pred CCceEEEehhHhHHHHHHh---CCccceeeechhcccceEEeccccceeEEEeccccc----------------------
Confidence 9999999988777776663 899999999998888888778899999999984210
Q ss_pred EEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecccccc
Q 007283 289 CLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENS 368 (609)
Q Consensus 289 ~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~ 368 (609)
...+.+|...+.+++|.+. ..+++||.||.|.+|..-...
T Consensus 320 ----------------------------qlifrg~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~KKk---------- 359 (479)
T KOG0299|consen 320 ----------------------------QLIFRGGEGSIDCVAFIND--EHFVSGSDNGSIALWSLLKKK---------- 359 (479)
T ss_pred ----------------------------eeeeeCCCCCeeeEEEecc--cceeeccCCceEEEeeecccC----------
Confidence 1223456778888888755 679999999999999653211
Q ss_pred ceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCC
Q 007283 369 QIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRF 448 (609)
Q Consensus 369 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (609)
++. .....++.. .....++..+
T Consensus 360 plf------------------------------~~~~AHgv~----------------------------~~~~~~~~~~ 381 (479)
T KOG0299|consen 360 PLF------------------------------TSRLAHGVI----------------------------PELDPVNGNF 381 (479)
T ss_pred cee------------------------------Eeecccccc----------------------------CCcccccccc
Confidence 000 000000000 0001122336
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEEecCC--eeeeeEEEecCCCceEEEEECCCCCEEEEE
Q 007283 449 PVTASAIAPDGSEAIIGSQDGKLRVYSIRGD--TLTEEAVLEKHRGAVSVIRYSPDVSMFASG 509 (609)
Q Consensus 449 ~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~--~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~ 509 (609)
.++++++.|...++|+|+.+|.||+|.+..+ .+.....++ ..+-|++|+|+++|..+++|
T Consensus 382 Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 382 WITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred ceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEe
Confidence 7999999999999999999999999999876 222222233 67889999999999966665
No 80
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=1.2e-27 Score=218.67 Aligned_cols=290 Identities=22% Similarity=0.337 Sum_probs=218.3
Q ss_pred CCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--cccccCcCCCCccceEEEEECCCCCeEEEEeCC
Q 007283 177 PFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTAD--KIGELSPEDGHKGSVYAVSWSPDGKQVLTASAD 254 (609)
Q Consensus 177 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d 254 (609)
|......+..|...+..+.|.++...|++|+.|..|.+|+....+ .+.++ .|..+.|+++.|.++++++++.+.|
T Consensus 164 pS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tL---aGs~g~it~~d~d~~~~~~iAas~d 240 (459)
T KOG0288|consen 164 PSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTL---AGSLGNITSIDFDSDNKHVIAASND 240 (459)
T ss_pred chhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhh---hccCCCcceeeecCCCceEEeecCC
Confidence 334445566789999999999998899999999999999977665 44444 3667889999999999999999999
Q ss_pred CcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEec
Q 007283 255 KSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLN 334 (609)
Q Consensus 255 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 334 (609)
+.+++|+++. .+ ...++.||+..|+++.+..
T Consensus 241 ~~~r~Wnvd~---~r----------------------------------------------~~~TLsGHtdkVt~ak~~~ 271 (459)
T KOG0288|consen 241 KNLRLWNVDS---LR----------------------------------------------LRHTLSGHTDKVTAAKFKL 271 (459)
T ss_pred Cceeeeeccc---hh----------------------------------------------hhhhhcccccceeeehhhc
Confidence 9999999862 11 1245678999999998874
Q ss_pred CCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCcee
Q 007283 335 IDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDL 414 (609)
Q Consensus 335 ~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (609)
.. ..+++|+.|.+|++|++......+.... .+....+......+.++.+|.+++.|+.+...
T Consensus 272 ~~-~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~---------------- 333 (459)
T KOG0288|consen 272 SH-SRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCSISDVISGHFDKKVRFWDIRSAD---------------- 333 (459)
T ss_pred cc-cceeeccccchhhhhhhhhhheeccccc-cccccceEecceeeeecccccceEEEeccCCc----------------
Confidence 43 2399999999999999876544332111 11111122223446677788888888765433
Q ss_pred EeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecC--CC
Q 007283 415 SVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKH--RG 492 (609)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h--~~ 492 (609)
....+.....++++.++++|..+.+.+.|.++.+.|+++........-.+. ..
T Consensus 334 -------------------------~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~as 388 (459)
T KOG0288|consen 334 -------------------------KTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCAS 388 (459)
T ss_pred -------------------------eeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccc
Confidence 233344455789999999999999999999999999987654322211111 22
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCC-ceEEEEECCCCcEEEEEeCCCeEEEE
Q 007283 493 AVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTA-RINCLAWSPNNSMVATGSLDTCVIIY 561 (609)
Q Consensus 493 ~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~-~i~~l~~s~d~~~l~s~s~D~~v~vw 561 (609)
..+.+.|||++.|+|+||.||.++||++.+++........+.. .|++++|+|.|+.|++++.++.+.+|
T Consensus 389 DwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 389 DWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 4889999999999999999999999999887664432233433 79999999999999999999999999
No 81
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=3.5e-26 Score=210.27 Aligned_cols=285 Identities=23% Similarity=0.328 Sum_probs=224.7
Q ss_pred ccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 007283 146 RRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGE 225 (609)
Q Consensus 146 ~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~ 225 (609)
..+.++...|..+ .+.+||.|....++|.+..+....+.||.-.|+.+.|+|+...+++++.|..|+||..-.......
T Consensus 220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~ 298 (506)
T KOG0289|consen 220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS 298 (506)
T ss_pred CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc
Confidence 4577777777744 599999999999999999999999999999999999999999999999999999998766553322
Q ss_pred cCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcE
Q 007283 226 LSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTI 305 (609)
Q Consensus 226 ~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 305 (609)
. ..|.+.|+.+..+|.|+||++++.|++..+.|++. +...
T Consensus 299 ~---~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~---g~~l---------------------------------- 338 (506)
T KOG0289|consen 299 S---RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISS---GSQL---------------------------------- 338 (506)
T ss_pred c---ccccccceeeeeccCCcEEEEecCCceEEEEEccC---CcEE----------------------------------
Confidence 2 46999999999999999999999999988887652 1000
Q ss_pred EEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEec
Q 007283 306 SIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGF 385 (609)
Q Consensus 306 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (609)
+.. +.+ .+
T Consensus 339 -------------------------t~v----------s~~--------------------~s----------------- 346 (506)
T KOG0289|consen 339 -------------------------TVV----------SDE--------------------TS----------------- 346 (506)
T ss_pred -------------------------EEE----------eec--------------------cc-----------------
Confidence 000 000 00
Q ss_pred cceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEE
Q 007283 386 DNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIG 465 (609)
Q Consensus 386 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~g 465 (609)
.-.+++.+|+|||..|.+|
T Consensus 347 -------------------------------------------------------------~v~~ts~~fHpDgLifgtg 365 (506)
T KOG0289|consen 347 -------------------------------------------------------------DVEYTSAAFHPDGLIFGTG 365 (506)
T ss_pred -------------------------------------------------------------cceeEEeeEcCCceEEecc
Confidence 0125677899999999999
Q ss_pred eCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCC
Q 007283 466 SQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545 (609)
Q Consensus 466 s~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d 545 (609)
..||.|+|||++.+. ....+.+|+++|.+|+|+.||.++|++..|+.|++||++.-+........-..++.++.|.+.
T Consensus 366 t~d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~S 443 (506)
T KOG0289|consen 366 TPDGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQS 443 (506)
T ss_pred CCCceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCC
Confidence 999999999998765 345678999999999999999999999999999999987654322222223347999999999
Q ss_pred CcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEc
Q 007283 546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRL 606 (609)
Q Consensus 546 ~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~ 606 (609)
|++|+.++.|-.|.+++-.+.....+....-|++..++++|. ...+++++|.|..+++..+
T Consensus 444 Gt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 444 GTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred CCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 999999987766666553332223344455688899999998 6789999999999998865
No 82
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1.7e-27 Score=210.66 Aligned_cols=288 Identities=19% Similarity=0.284 Sum_probs=225.1
Q ss_pred cCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeee--------ccCcccceEEEEEcCCCCEEEEEeCCCcEEE
Q 007283 143 GHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLS--------HRGHSNFVNCVRFSPDGSKFISVSSDKKGII 214 (609)
Q Consensus 143 ~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~--------~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~i 214 (609)
+....+.+..|+||+.+ +++|+.|+.|.+|+..+++.... |.-+.++|.|+.|+.|..+||+|+.||.|++
T Consensus 211 g~KSh~EcA~FSPDgqy-LvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQY-LVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCCCCce-EeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 44566889999999986 99999999999999888876543 3346789999999999999999999999999
Q ss_pred EeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCC
Q 007283 215 YDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQND 294 (609)
Q Consensus 215 wd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (609)
|.+++|.++..+. .+|+..|+++.||.|+..++++|.|.++|+--+. .++.
T Consensus 290 Wri~tG~ClRrFd--rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK---SGK~------------------------ 340 (508)
T KOG0275|consen 290 WRIETGQCLRRFD--RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK---SGKC------------------------ 340 (508)
T ss_pred EEEecchHHHHhh--hhhccCeeEEEEccCcchhhcccccceEEEeccc---cchh------------------------
Confidence 9999999998884 5899999999999999999999999999998665 2222
Q ss_pred eEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEee
Q 007283 295 FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFA 374 (609)
Q Consensus 295 ~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~ 374 (609)
.+++.||+..|....|.+ ++..+++++.||+|++|+..+.......+
T Consensus 341 ----------------------LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~~Tfk---------- 387 (508)
T KOG0275|consen 341 ----------------------LKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTECLSTFK---------- 387 (508)
T ss_pred ----------------------HHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcchhhhhhcc----------
Confidence 245668888888888764 56789999999999999765432111000
Q ss_pred eeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEE
Q 007283 375 AIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASA 454 (609)
Q Consensus 375 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (609)
.. ....++..+.
T Consensus 388 ~~--------------------------------------------------------------------~~d~~vnsv~ 399 (508)
T KOG0275|consen 388 PL--------------------------------------------------------------------GTDYPVNSVI 399 (508)
T ss_pred CC--------------------------------------------------------------------CCcccceeEE
Confidence 00 0012344444
Q ss_pred EcC-CCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCC
Q 007283 455 IAP-DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYH 533 (609)
Q Consensus 455 ~sp-~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h 533 (609)
.-| +-.+++++....+|+|-++++.-......-+...+...+...||.|..+-..+.|+.++.+++.++.... .+.-|
T Consensus 400 ~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~-tl~Vh 478 (508)
T KOG0275|consen 400 LLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLER-TLPVH 478 (508)
T ss_pred EcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceee-eeecc
Confidence 444 4467899999999999998754321111112234556667799999999999999999999998887654 35669
Q ss_pred CCceEEEEECCCCcEEEEEeCCCeEEEEE
Q 007283 534 TARINCLAWSPNNSMVATGSLDTCVIIYE 562 (609)
Q Consensus 534 ~~~i~~l~~s~d~~~l~s~s~D~~v~vw~ 562 (609)
...|..++-+|..+.||+=+.||.+++|.
T Consensus 479 EkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 479 EKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccccccccCcccchhhhhcccchhhhcC
Confidence 99999999999999999999999999995
No 83
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=7.2e-26 Score=194.90 Aligned_cols=281 Identities=19% Similarity=0.258 Sum_probs=220.2
Q ss_pred cccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEE
Q 007283 51 SIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAF 130 (609)
Q Consensus 51 ~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~ 130 (609)
+.+.+|...|..++|+.+|.+||+|+.|+++++|.++..+..+.
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~------------------------------------ 57 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE------------------------------------ 57 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh------------------------------------
Confidence 45778999999999999999999999999999999876532110
Q ss_pred EcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCC
Q 007283 131 MWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDK 210 (609)
Q Consensus 131 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~ 210 (609)
....+|.+.|..+.|+|..+.++++.+.|.+|++||....++..........+ -+.|+|+|.+++.+..|.
T Consensus 58 --------~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD 128 (313)
T KOG1407|consen 58 --------LVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDD 128 (313)
T ss_pred --------hcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcc
Confidence 02357888888889988888889999999999999999988877655444433 467999999999999999
Q ss_pred cEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEE
Q 007283 211 KGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL 290 (609)
Q Consensus 211 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (609)
.|.+.|.++.+..... ...-.+.-++|+.++.+++.-.+.|.|.|-.... +
T Consensus 129 ~it~id~r~~~~~~~~----~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyps-----L-------------------- 179 (313)
T KOG1407|consen 129 RITFIDARTYKIVNEE----QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPS-----L-------------------- 179 (313)
T ss_pred cEEEEEecccceeehh----cccceeeeeeecCCCCEEEEecCCceEEEEeccc-----c--------------------
Confidence 9999998887655443 2455677888887777766666667776654310 0
Q ss_pred EcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccce
Q 007283 291 WQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQI 370 (609)
Q Consensus 291 ~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~ 370 (609)
++...++.|.
T Consensus 180 ------------------------kpv~si~AH~---------------------------------------------- 189 (313)
T KOG1407|consen 180 ------------------------KPVQSIKAHP---------------------------------------------- 189 (313)
T ss_pred ------------------------ccccccccCC----------------------------------------------
Confidence 0001111121
Q ss_pred eEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCce
Q 007283 371 KCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPV 450 (609)
Q Consensus 371 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (609)
...
T Consensus 190 -----------------------------------------------------------------------------snC 192 (313)
T KOG1407|consen 190 -----------------------------------------------------------------------------SNC 192 (313)
T ss_pred -----------------------------------------------------------------------------cce
Confidence 114
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeee
Q 007283 451 TASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNM 530 (609)
Q Consensus 451 ~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~ 530 (609)
.|+.|+|+|+++|+|+.|-.+-+||++ .+.+...+..+.-+|..|+||-||++||+||.|..|-|=+++++....+
T Consensus 193 icI~f~p~GryfA~GsADAlvSLWD~~--ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~e-- 268 (313)
T KOG1407|consen 193 ICIEFDPDGRYFATGSADALVSLWDVD--ELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWE-- 268 (313)
T ss_pred EEEEECCCCceEeeccccceeeccChh--HhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEE--
Confidence 567789999999999999999999986 5666788899999999999999999999999999999999888876543
Q ss_pred cCCCCceEEEEECCCCcEEEEEeCCC
Q 007283 531 LYHTARINCLAWSPNNSMVATGSLDT 556 (609)
Q Consensus 531 ~~h~~~i~~l~~s~d~~~l~s~s~D~ 556 (609)
..+.++...++|+|...+||-+..|.
T Consensus 269 I~~~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 269 IPCEGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred eeccCCceeEEecCCCceeeEEecCC
Confidence 45888999999999999999887764
No 84
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.8e-26 Score=214.39 Aligned_cols=282 Identities=22% Similarity=0.339 Sum_probs=221.0
Q ss_pred CccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccc
Q 007283 145 SRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIG 224 (609)
Q Consensus 145 ~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~ 224 (609)
.+.|.+++|+|..++-+|+.+.- .+.+|+..+......+..-...|.++.|-.||++||.|...|.|+|+|.++...+.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~-rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR 104 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSV-RVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR 104 (487)
T ss_pred cCcceeEecCCCCCCceEEeccc-EEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH
Confidence 35799999999888767766554 46788866655555555566789999999999999999999999999966644455
Q ss_pred ccCcCCCCccceEEEEECCC-CCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCC
Q 007283 225 ELSPEDGHKGSVYAVSWSPD-GKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGG 303 (609)
Q Consensus 225 ~~~~~~~h~~~V~~l~~spd-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 303 (609)
.+ .+|+.+|....|+|+ +..|++|+.|+.+++||+++. ..
T Consensus 105 ~~---~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a----~v-------------------------------- 145 (487)
T KOG0310|consen 105 QL---YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA----YV-------------------------------- 145 (487)
T ss_pred HH---hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc----EE--------------------------------
Confidence 54 489999999999995 557888888999999998631 00
Q ss_pred cEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEE
Q 007283 304 TISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTS 383 (609)
Q Consensus 304 ~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (609)
...+.+|+..|.+.++++.++.+++|||.||+|++|+....
T Consensus 146 -------------~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~-------------------------- 186 (487)
T KOG0310|consen 146 -------------QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL-------------------------- 186 (487)
T ss_pred -------------EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccC--------------------------
Confidence 12456899999999999888889999999999999964321
Q ss_pred eccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEE
Q 007283 384 GFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAI 463 (609)
Q Consensus 384 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~ 463 (609)
.+....+++..||..+.+-|.|..+|
T Consensus 187 ------------------------------------------------------~~~v~elnhg~pVe~vl~lpsgs~ia 212 (487)
T KOG0310|consen 187 ------------------------------------------------------TSRVVELNHGCPVESVLALPSGSLIA 212 (487)
T ss_pred ------------------------------------------------------CceeEEecCCCceeeEEEcCCCCEEE
Confidence 01123456677899999999999999
Q ss_pred EEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEEC
Q 007283 464 IGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWS 543 (609)
Q Consensus 464 ~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s 543 (609)
+++ ...+++||+.++... ...+..|...|+|+.+..+++.|.||+.|+.+++||+.+.+. ..-..-.++|.+++.|
T Consensus 213 sAg-Gn~vkVWDl~~G~ql-l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kv--v~s~~~~~pvLsiavs 288 (487)
T KOG0310|consen 213 SAG-GNSVKVWDLTTGGQL-LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKV--VHSWKYPGPVLSIAVS 288 (487)
T ss_pred EcC-CCeEEEEEecCCcee-hhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEE--EEeeecccceeeEEec
Confidence 886 457999999855432 122345999999999999999999999999999999644332 2223457899999999
Q ss_pred CCCcEEEEEeCCCeEEEEEc
Q 007283 544 PNNSMVATGSLDTCVIIYEI 563 (609)
Q Consensus 544 ~d~~~l~s~s~D~~v~vw~~ 563 (609)
||++.++.|-.||.+.+-+.
T Consensus 289 ~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 289 PDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred CCCceEEEecccceeeeehh
Confidence 99999999999999887644
No 85
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.3e-27 Score=214.65 Aligned_cols=284 Identities=18% Similarity=0.279 Sum_probs=215.9
Q ss_pred eEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 007283 138 VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDG 217 (609)
Q Consensus 138 ~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~ 217 (609)
++.+.+|.+.|.+++-+|.....+++|+.||.+++||.....+...+..|.+.|..+++.. ..++++++|++++.|..
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 4567899999999999999866799999999999999999999999999999999999987 46889999999999975
Q ss_pred CCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEE
Q 007283 218 KTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLV 297 (609)
Q Consensus 218 ~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (609)
.. ..+.++. -.+.+..+.-+..+..++|+|. .|-|||..-. ..++.+
T Consensus 137 ~~-~p~~til----g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~---~Pv~sm----------------------- 183 (433)
T KOG0268|consen 137 DG-PPLHTIL----GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRD---NPVSSM----------------------- 183 (433)
T ss_pred cC-Ccceeee----ccccccccccccccccccccCc--eeeecccccC---Ccccee-----------------------
Confidence 54 2333331 2345677777777778888875 5889997521 111111
Q ss_pred EEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeC
Q 007283 298 IVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIE 377 (609)
Q Consensus 298 ~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (609)
.-....|.++.|++....+|++|+.|+.|.++|+..+.. +
T Consensus 184 -----------------------swG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P----------l------- 223 (433)
T KOG0268|consen 184 -----------------------SWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASP----------L------- 223 (433)
T ss_pred -----------------------ecCCCceeEEecCCCcchheeeeccCCceEEEecccCCc----------c-------
Confidence 112234556666655557899999999999997643210 0
Q ss_pred CcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcC
Q 007283 378 EEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAP 457 (609)
Q Consensus 378 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 457 (609)
..+.....-+.++++|
T Consensus 224 ----------------------------------------------------------------~KVi~~mRTN~IswnP 239 (433)
T KOG0268|consen 224 ----------------------------------------------------------------KKVILTMRTNTICWNP 239 (433)
T ss_pred ----------------------------------------------------------------ceeeeeccccceecCc
Confidence 0000112345678999
Q ss_pred CCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCC---
Q 007283 458 DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHT--- 534 (609)
Q Consensus 458 ~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~--- 534 (609)
++-.+++|+.|..++.||++.-. ....+..+|.+.|..|+|||-|+-+++||.|++|+||....+.- .-..|+
T Consensus 240 eafnF~~a~ED~nlY~~DmR~l~-~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S---RdiYhtkRM 315 (433)
T KOG0268|consen 240 EAFNFVAANEDHNLYTYDMRNLS-RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS---RDIYHTKRM 315 (433)
T ss_pred cccceeeccccccceehhhhhhc-ccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcc---hhhhhHhhh
Confidence 88889999999999999997533 23567789999999999999999999999999999998654321 122344
Q ss_pred CceEEEEECCCCcEEEEEeCCCeEEEEEcC
Q 007283 535 ARINCLAWSPNNSMVATGSLDTCVIIYEID 564 (609)
Q Consensus 535 ~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~ 564 (609)
..|.|+.||-|.+++++||.|+.|++|.-.
T Consensus 316 q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 316 QHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred heeeEEEEeccccEEEecCCCcceeeeecc
Confidence 358999999999999999999999999854
No 86
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=1.3e-25 Score=193.92 Aligned_cols=290 Identities=21% Similarity=0.298 Sum_probs=221.1
Q ss_pred EecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 007283 141 FDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTA 220 (609)
Q Consensus 141 ~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~ 220 (609)
+.||.++++.+.|..+|.. +-+|+.|.+..+|=..+++...++.||.+.|.|+..+.+.+.+++|+.|.++++||+++|
T Consensus 6 l~GHERplTqiKyN~eGDL-lFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDL-LFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred cccCccccceEEecCCCcE-EEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 6799999999999999985 889999999999988888889999999999999999999999999999999999999999
Q ss_pred ccccccCcCCCCccceEEEEECCCCCeEEEEeCC-----CcEEEeecccCCC----Cc-eEEEeccCCCCCccceEEEEE
Q 007283 221 DKIGELSPEDGHKGSVYAVSWSPDGKQVLTASAD-----KSAKVWDISEDNH----GK-LKKTLTPSGSGGVDDMLVGCL 290 (609)
Q Consensus 221 ~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d-----~~i~iwd~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~ 290 (609)
+.+.++. ....|..+.|+++|.+++....+ +.|.++|++.... .. ..+...+ +..+....
T Consensus 85 k~la~~k----~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~------~skit~a~ 154 (327)
T KOG0643|consen 85 KQLATWK----TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP------DSKITSAL 154 (327)
T ss_pred cEEEEee----cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC------ccceeeee
Confidence 9998874 46789999999999988777543 5688999874321 11 1111111 12233455
Q ss_pred Ec--CCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecccccc
Q 007283 291 WQ--NDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENS 368 (609)
Q Consensus 291 ~~--~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~ 368 (609)
|. ++.++++..+|.|..|+..........-..|...|..+.++. +..+++|+|.|.+-++||..+-
T Consensus 155 Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~tl----------- 222 (327)
T KOG0643|consen 155 WGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSR-DRTYFITGSKDTTAKLVDVRTL----------- 222 (327)
T ss_pred ecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccC-CcceEEecccCccceeeeccce-----------
Confidence 65 679999999999999998765544455567999999999874 4579999999999999975321
Q ss_pred ceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCC
Q 007283 369 QIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRF 448 (609)
Q Consensus 369 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (609)
+.++......
T Consensus 223 ----------------------------------------------------------------------~v~Kty~te~ 232 (327)
T KOG0643|consen 223 ----------------------------------------------------------------------EVLKTYTTER 232 (327)
T ss_pred ----------------------------------------------------------------------eeEEEeeecc
Confidence 0111122234
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEEe--cCCee----------eeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEE
Q 007283 449 PVTASAIAPDGSEAIIGSQDGKLRVYSI--RGDTL----------TEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAI 516 (609)
Q Consensus 449 ~~~~~~~sp~g~~l~~gs~dg~i~iw~~--~~~~~----------~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~ 516 (609)
|+++.+++|...+++.|+.....-+=.. +.+++ .+....++|-++|++|+|+|+|+..+||+.||.||
T Consensus 233 PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR 312 (327)
T KOG0643|consen 233 PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVR 312 (327)
T ss_pred cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEE
Confidence 6888888888888777765443322221 22211 11234689999999999999999999999999999
Q ss_pred EEEccCC
Q 007283 517 VWDRVSR 523 (609)
Q Consensus 517 iwd~~~~ 523 (609)
+.-+...
T Consensus 313 ~h~Fd~~ 319 (327)
T KOG0643|consen 313 LHHFDSN 319 (327)
T ss_pred EEEeccc
Confidence 9865544
No 87
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.1e-25 Score=199.00 Aligned_cols=293 Identities=16% Similarity=0.240 Sum_probs=193.9
Q ss_pred ccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCc-----eeeEEEeecccceeEEEECCCCCEEEE-EECCCC
Q 007283 50 VSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDH-----VLKKEFRVLSGRIDDLQWSPDGLRIVA-CGDGKG 123 (609)
Q Consensus 50 ~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~-----~~~~~~~~~~~~v~~~~~spdg~~l~~-~~~~~~ 123 (609)
+..+.||++.|++++||.||++|||++.|++||||++.+-. +++.++. -+-.+.++|+||.+-++. +-.+.
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve--~dhpT~V~FapDc~s~vv~~~~g~- 155 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE--YDHPTRVVFAPDCKSVVVSVKRGN- 155 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc--CCCceEEEECCCcceEEEEEccCC-
Confidence 34578999999999999999999999999999999986421 1111111 124578999999875554 43332
Q ss_pred cceEEEEEcCC---CCeeE---------EEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccce
Q 007283 124 KSLVRAFMWDS---GTNVG---------EFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFV 191 (609)
Q Consensus 124 ~~~~~~~~~~~---~~~~~---------~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v 191 (609)
.++++-..+ +.... .-+.|+-.|..+-...++ ..|++++.|..|.+|+.. ++............
T Consensus 156 --~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n 231 (420)
T KOG2096|consen 156 --KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK-GQLLQSIDTNQSSN 231 (420)
T ss_pred --EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-Cceeeeeccccccc
Confidence 233333322 11111 113456666666655544 469999999999999987 55544443334445
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCC---CCc--cccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeeccc--
Q 007283 192 NCVRFSPDGSKFISVSSDKKGIIYDGK---TAD--KIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE-- 264 (609)
Q Consensus 192 ~~l~~s~dg~~l~s~~~d~~i~iwd~~---~~~--~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~-- 264 (609)
+..+.||+|+++++++.-..+++|.+- .|. .....-..+||.+.|..++|+|+.+.+++.|.||+.|+||.+.
T Consensus 232 ~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY 311 (420)
T KOG2096|consen 232 YDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRY 311 (420)
T ss_pred cceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceE
Confidence 678899999999999999999999742 221 1111223469999999999999999999999999999999752
Q ss_pred --CCCCceEEEe-ccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEE
Q 007283 265 --DNHGKLKKTL-TPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVIL 341 (609)
Q Consensus 265 --~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 341 (609)
++..++.++. .+....+.+......+ .+...++++....+++|..++.......-..|...|.++.|.. ++++++
T Consensus 312 ~~~qDpk~Lk~g~~pl~aag~~p~RL~ls-P~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g~~~a 389 (420)
T KOG2096|consen 312 EAGQDPKILKEGSAPLHAAGSEPVRLELS-PSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSS-DGKYIA 389 (420)
T ss_pred ecCCCchHhhcCCcchhhcCCCceEEEeC-CCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecC-CCcEEe
Confidence 1122222222 1111111112222222 2345566777888999987765544444456999999999864 567888
Q ss_pred EEecCCcEEEE
Q 007283 342 SSSYDGLIVKW 352 (609)
Q Consensus 342 t~s~dg~i~~W 352 (609)
||+ |.-+++.
T Consensus 390 tcG-dr~vrv~ 399 (420)
T KOG2096|consen 390 TCG-DRYVRVI 399 (420)
T ss_pred eec-ceeeeee
Confidence 887 5556554
No 88
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=1.3e-25 Score=194.01 Aligned_cols=239 Identities=18% Similarity=0.254 Sum_probs=196.8
Q ss_pred EEeecCCCCeEEEeC-CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeec
Q 007283 21 LISGHPKSNSILYTN-GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVL 99 (609)
Q Consensus 21 ~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~ 99 (609)
-|...-+|..|.++. +.+..+|-..+++++-.|.||++-|.|++.+-+.++++||++|.+++|||+++++++- .+ ..
T Consensus 15 qiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la-~~-k~ 92 (327)
T KOG0643|consen 15 QIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLA-TW-KT 92 (327)
T ss_pred eEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEE-Ee-ec
Confidence 566777888888775 5788899888999999999999999999999999999999999999999999998643 22 23
Q ss_pred ccceeEEEECCCCCEEEEEECCCCcc--eEEEEEcC-------CCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeE
Q 007283 100 SGRIDDLQWSPDGLRIVACGDGKGKS--LVRAFMWD-------SGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLV 170 (609)
Q Consensus 100 ~~~v~~~~~spdg~~l~~~~~~~~~~--~~~~~~~~-------~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i 170 (609)
..+|..+.|+++|.+++++.|..... .+.+++.. ...+...+..+...++..-|.|-+.+ |++|..|+.|
T Consensus 93 ~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~-ii~Ghe~G~i 171 (327)
T KOG0643|consen 93 NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET-IIAGHEDGSI 171 (327)
T ss_pred CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE-EEEecCCCcE
Confidence 56799999999999999988754332 24444444 23446667778889999999999986 8899999999
Q ss_pred EEEeCCCCc-eeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccC----------------------
Q 007283 171 NFYEGPPFK-FKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELS---------------------- 227 (609)
Q Consensus 171 ~~~~~~~~~-~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~---------------------- 227 (609)
..||..+++ .+..-..|...|+.++|+||..++++++.|.+.++||..+-+.+.++.
T Consensus 172 s~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 172 SIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGG 251 (327)
T ss_pred EEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCC
Confidence 999999874 455557799999999999999999999999999999976544332211
Q ss_pred ------------------------------cCCCCccceEEEEECCCCCeEEEEeCCCcEEEeec
Q 007283 228 ------------------------------PEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDI 262 (609)
Q Consensus 228 ------------------------------~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~ 262 (609)
..++|-++|++++|||+|+..++|+.||.||+.-.
T Consensus 252 qeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 252 QEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHF 316 (327)
T ss_pred ceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEe
Confidence 13479999999999999999999999999998754
No 89
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=2.4e-25 Score=225.43 Aligned_cols=274 Identities=25% Similarity=0.446 Sum_probs=218.1
Q ss_pred cccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccc-cCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccC
Q 007283 187 HSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGE-LSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISED 265 (609)
Q Consensus 187 h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~ 265 (609)
+...+.+..|. ..++++++.|.++.+||..++..+.. + .||.+.|.+++|..-+.+|++|+.|.++++||...
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l---~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s- 280 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRL---VGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST- 280 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeec---cCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC-
Confidence 45668888887 44789999999999999998887765 4 59999999999987788999999999999999752
Q ss_pred CCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEec
Q 007283 266 NHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSY 345 (609)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~ 345 (609)
+... ..+.||...|.++.. .+..+++|+.
T Consensus 281 --g~C~----------------------------------------------~~l~gh~stv~~~~~---~~~~~~sgs~ 309 (537)
T KOG0274|consen 281 --GECT----------------------------------------------HSLQGHTSSVRCLTI---DPFLLVSGSR 309 (537)
T ss_pred --CcEE----------------------------------------------EEecCCCceEEEEEc---cCceEeeccC
Confidence 2222 345578888888765 3467888999
Q ss_pred CCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEE
Q 007283 346 DGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVL 425 (609)
Q Consensus 346 dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (609)
|.+|++|+..++..
T Consensus 310 D~tVkVW~v~n~~~------------------------------------------------------------------ 323 (537)
T KOG0274|consen 310 DNTVKVWDVTNGAC------------------------------------------------------------------ 323 (537)
T ss_pred CceEEEEeccCcce------------------------------------------------------------------
Confidence 99999996542210
Q ss_pred EEecccEEEeeCCeeeEEec-cCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCC
Q 007283 426 VSTDSGVVLLRGAEVVSTIN-LRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVS 504 (609)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~ 504 (609)
+..+. +..+|.++.+. +.++++|+.|++|++|++...++ ...+++|.+.|.++.+.+. .
T Consensus 324 ---------------l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~c--l~sl~gH~~~V~sl~~~~~-~ 383 (537)
T KOG0274|consen 324 ---------------LNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKC--LKSLSGHTGRVYSLIVDSE-N 383 (537)
T ss_pred ---------------EEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhcee--eeeecCCcceEEEEEecCc-c
Confidence 01111 33567777766 88999999999999999986654 5788999999999988766 9
Q ss_pred EEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEecc-ccCCeEE
Q 007283 505 MFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGA-HLGGVYG 583 (609)
Q Consensus 505 ~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~-h~~~v~~ 583 (609)
.+.+|+.|++|++||+.+.+..+..+.+|..-+..+.+ .+++|++++.|++|++||..... ......+ |.+.|++
T Consensus 384 ~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~--~~~~~~~~~~~~v~~ 459 (537)
T KOG0274|consen 384 RLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGE--CLRTLEGRHVGGVSA 459 (537)
T ss_pred eEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCc--eeeeeccCCcccEEE
Confidence 99999999999999998873344557788888877766 68899999999999999987643 2333444 7899999
Q ss_pred EEEcCCCeEEEEeCCCcEEEEEccC
Q 007283 584 LAFTDEHSVVSSGEDACVRVWRLTP 608 (609)
Q Consensus 584 ~~~s~~~~l~s~s~D~~i~~W~~~~ 608 (609)
+++. +..+++++.|+++++|++.+
T Consensus 460 l~~~-~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 460 LALG-KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred eecC-cceEEEEecCCeeEEEeccc
Confidence 9987 57789999999999999863
No 90
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.3e-24 Score=183.03 Aligned_cols=280 Identities=22% Similarity=0.307 Sum_probs=205.4
Q ss_pred EEeecCCCCeEEEe-CCCEEEEEeCC---CC-------ccc-c----ccccCCCCcEEEEECCCCCEEEEEeCCCcEEEE
Q 007283 21 LISGHPKSNSILYT-NGRSVIILDLS---NP-------LQV-S----IYGEHAYPATVARFSPNGEWIASADVSGTVRIW 84 (609)
Q Consensus 21 ~~~~~~~~~~l~~~-~~~~~~i~~~~---~~-------~~~-~----~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vW 84 (609)
++.|||.|...+.. |..+.+|.... +. ++. . .-..|++.|.|.+|||+|++||+|++|++|++-
T Consensus 37 av~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l 116 (350)
T KOG0641|consen 37 AVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVL 116 (350)
T ss_pred eEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEE
Confidence 88999998765443 45666664421 11 111 1 124789999999999999999999999999998
Q ss_pred cCCCCce----eeEEEeecccceeEEEECCC----CCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeC
Q 007283 85 GAHNDHV----LKKEFRVLSGRIDDLQWSPD----GLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPS 156 (609)
Q Consensus 85 d~~~~~~----~~~~~~~~~~~v~~~~~spd----g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~ 156 (609)
-+....+ ...+|..|.+-|..++|-.| |..|++.|.+.- .+.+.+-..+.....+.+|++.|.++ ++-+
T Consensus 117 ~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc--~iy~tdc~~g~~~~a~sghtghilal-yswn 193 (350)
T KOG0641|consen 117 PFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDC--KIYITDCGRGQGFHALSGHTGHILAL-YSWN 193 (350)
T ss_pred ecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcc--eEEEeecCCCCcceeecCCcccEEEE-EEec
Confidence 6654321 22357788999999999765 445555555443 34445555677788899999999877 3444
Q ss_pred CCeEEEEecCCCeEEEEeCCCCceeeecc----C---cccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcC
Q 007283 157 RPFRIATCGEDFLVNFYEGPPFKFKLSHR----G---HSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPE 229 (609)
Q Consensus 157 ~~~~i~t~~~d~~i~~~~~~~~~~~~~~~----~---h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 229 (609)
+- .|++|+.|.+|++||.+-..++..+. + ....|.+++..|.|++|++|-.|....+||++.+..+..+.
T Consensus 194 ~~-m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~-- 270 (350)
T KOG0641|consen 194 GA-MFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH-- 270 (350)
T ss_pred Cc-EEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC--
Confidence 54 59999999999999987665555432 1 23679999999999999999999999999999999888875
Q ss_pred CCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCC--eEEEEEcCCcEEE
Q 007283 230 DGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQND--FLVIVSLGGTISI 307 (609)
Q Consensus 230 ~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~ 307 (609)
.|+..|.++.|+|...|+++++.|..|++=|+..+ +.+.+..-.-+...+..+.|-|.+. .+++.+.|.+..+
T Consensus 271 -phsadir~vrfsp~a~yllt~syd~~ikltdlqgd----la~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tl 345 (350)
T KOG0641|consen 271 -PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD----LAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATL 345 (350)
T ss_pred -CCccceeEEEeCCCceEEEEecccceEEEeecccc----hhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEE
Confidence 58999999999999999999999999999998643 2221111111122344567778754 4566777888888
Q ss_pred EeCC
Q 007283 308 FSAN 311 (609)
Q Consensus 308 ~~~~ 311 (609)
|.++
T Consensus 346 wa~~ 349 (350)
T KOG0641|consen 346 WALN 349 (350)
T ss_pred eccC
Confidence 8653
No 91
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=5.8e-25 Score=213.73 Aligned_cols=281 Identities=23% Similarity=0.354 Sum_probs=209.8
Q ss_pred ccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEE
Q 007283 50 VSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRA 129 (609)
Q Consensus 50 ~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~ 129 (609)
.+.+.||+..|..+++.++. .+++++.||++++|+-..++.+..+
T Consensus 7 s~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~---------------------------------- 51 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETH---------------------------------- 51 (745)
T ss_pred EEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccce----------------------------------
Confidence 46788999999988887655 7889999999999986554432210
Q ss_pred EEcCCCCeeEEEecCCccEEE-EEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeC
Q 007283 130 FMWDSGTNVGEFDGHSRRVLS-CAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSS 208 (609)
Q Consensus 130 ~~~~~~~~~~~~~~h~~~v~~-~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~ 208 (609)
.+.+|.+.|.. +.|.+.+..++++|+.|.++.+|..........++||...|.|+....++. +++||.
T Consensus 52 ----------~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSW 120 (745)
T KOG0301|consen 52 ----------AFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSW 120 (745)
T ss_pred ----------ecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEeccc
Confidence 12233333333 455444445799999999999999887778888999999999999888887 899999
Q ss_pred CCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEE
Q 007283 209 DKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVG 288 (609)
Q Consensus 209 d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (609)
|.++++|- .+++...+ .+|+..|.++.+-|++ .++|||.|.+|++|.-. +.
T Consensus 121 D~TakvW~--~~~l~~~l---~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~-----~~------------------ 171 (745)
T KOG0301|consen 121 DSTAKVWR--IGELVYSL---QGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG-----TL------------------ 171 (745)
T ss_pred ccceEEec--chhhhccc---CCcchheeeeeecCCC-cEEeccCcceeeeccCC-----ch------------------
Confidence 99999995 34444333 5899999999999988 77899999999999631 11
Q ss_pred EEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecccccc
Q 007283 289 CLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENS 368 (609)
Q Consensus 289 ~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~ 368 (609)
...+.||...|..+++.+.
T Consensus 172 ----------------------------l~tf~gHtD~VRgL~vl~~--------------------------------- 190 (745)
T KOG0301|consen 172 ----------------------------LKTFSGHTDCVRGLAVLDD--------------------------------- 190 (745)
T ss_pred ----------------------------hhhhccchhheeeeEEecC---------------------------------
Confidence 1345677777766655422
Q ss_pred ceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCC
Q 007283 369 QIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRF 448 (609)
Q Consensus 369 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (609)
T Consensus 191 -------------------------------------------------------------------------------- 190 (745)
T KOG0301|consen 191 -------------------------------------------------------------------------------- 190 (745)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEe
Q 007283 449 PVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLK 528 (609)
Q Consensus 449 ~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~ 528 (609)
..+++++.||.|++|++.++.+ ..+.+|+.-|.+++...++..+++++.|++++||+.. ....
T Consensus 191 -----------~~flScsNDg~Ir~w~~~ge~l---~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~---e~~q 253 (745)
T KOG0301|consen 191 -----------SHFLSCSNDGSIRLWDLDGEVL---LEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD---ECVQ 253 (745)
T ss_pred -----------CCeEeecCCceEEEEeccCcee---eeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC---ceEE
Confidence 1255666667777777654443 3567899999999988999999999999999999854 2223
Q ss_pred eecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcC
Q 007283 529 NMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEID 564 (609)
Q Consensus 529 ~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~ 564 (609)
.+......|+++.+-++|. +++|+.||-|+||..+
T Consensus 254 ~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 254 VITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 3333455899999998888 5789999999999865
No 92
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.4e-26 Score=206.63 Aligned_cols=282 Identities=18% Similarity=0.295 Sum_probs=206.4
Q ss_pred eeccCcccceEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEe
Q 007283 182 LSHRGHSNFVNCVRFSPDG-SKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVW 260 (609)
Q Consensus 182 ~~~~~h~~~v~~l~~s~dg-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iw 260 (609)
..+.||.+.|.|++=+|.. ..+++|+.||.|+|||....+++.++ .+|.+.|..|++.. ..++++|.|.+|+.|
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f---~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF---KAHEGLVRGICVTQ--TSFFTVGDDKTVKQW 134 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee---ecccCceeeEEecc--cceEEecCCcceeee
Confidence 3467999999999999986 67899999999999999988888777 47999999999976 678899999999999
Q ss_pred ecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEE
Q 007283 261 DISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVI 340 (609)
Q Consensus 261 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 340 (609)
.+.. ...+++... ..+..+..+ ..+..+
T Consensus 135 k~~~----~p~~tilg~-----------------------------------------------s~~~gIdh~-~~~~~F 162 (433)
T KOG0268|consen 135 KIDG----PPLHTILGK-----------------------------------------------SVYLGIDHH-RKNSVF 162 (433)
T ss_pred eccC----Ccceeeecc-----------------------------------------------ccccccccc-cccccc
Confidence 8763 222222110 011111111 122467
Q ss_pred EEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccC
Q 007283 341 LSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHY 420 (609)
Q Consensus 341 ~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (609)
+|||. .|.+|+.... .++..+ ...
T Consensus 163 aTcGe--~i~IWD~~R~----------~Pv~sm-----------------------------------------swG--- 186 (433)
T KOG0268|consen 163 ATCGE--QIDIWDEQRD----------NPVSSM-----------------------------------------SWG--- 186 (433)
T ss_pred cccCc--eeeecccccC----------Ccccee-----------------------------------------ecC---
Confidence 77765 4677864311 011000 000
Q ss_pred CcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCC-EEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEE
Q 007283 421 PELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGS-EAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRY 499 (609)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~-~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~ 499 (609)
...+.++.++|... .|++|..|+.|.+||++......+.++. -.-+.|+|
T Consensus 187 --------------------------~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~---mRTN~Isw 237 (433)
T KOG0268|consen 187 --------------------------ADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT---MRTNTICW 237 (433)
T ss_pred --------------------------CCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee---ccccceec
Confidence 01256667777655 4666679999999999877655444433 24467899
Q ss_pred CCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccC
Q 007283 500 SPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLG 579 (609)
Q Consensus 500 s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~ 579 (609)
+|+.--+++|+.|..++.+|...-...+.....|...|..++|||-|+-+++||.|++|+||.+..+. .+-.-..--..
T Consensus 238 nPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~-SRdiYhtkRMq 316 (433)
T KOG0268|consen 238 NPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH-SRDIYHTKRMQ 316 (433)
T ss_pred CccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCc-chhhhhHhhhh
Confidence 99999999999999999999877666666677899999999999999999999999999999987533 22221111234
Q ss_pred CeEEEEEc-CCCeEEEEeCCCcEEEEEc
Q 007283 580 GVYGLAFT-DEHSVVSSGEDACVRVWRL 606 (609)
Q Consensus 580 ~v~~~~~s-~~~~l~s~s~D~~i~~W~~ 606 (609)
.|.||.|| |..+++|||.|++|++|..
T Consensus 317 ~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 317 HVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred eeeEEEEeccccEEEecCCCcceeeeec
Confidence 68999999 8899999999999999975
No 93
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=1.1e-25 Score=211.14 Aligned_cols=290 Identities=18% Similarity=0.232 Sum_probs=198.8
Q ss_pred cccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEe----ecccceeEEEECCCCCEEEEEECCCCcceEE
Q 007283 53 YGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFR----VLSGRIDDLQWSPDGLRIVACGDGKGKSLVR 128 (609)
Q Consensus 53 ~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~----~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~ 128 (609)
+.+|..-|+++++.|.|..++||+-|.+|+.||+..-....+.|+ .-...|..++|||-|..++++... ...+
T Consensus 163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~---aqak 239 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS---AQAK 239 (641)
T ss_pred ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC---ccee
Confidence 667888899999999999999999999999999974221111122 235679999999998877776532 1234
Q ss_pred EEEcCCCC------------eeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCcee-ee-----ccCcccc
Q 007283 129 AFMWDSGT------------NVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFK-LS-----HRGHSNF 190 (609)
Q Consensus 129 ~~~~~~~~------------~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~-~~-----~~~h~~~ 190 (609)
+++.+.-. .+..-+||...+++..|+|.....|.||+.|+++++|++...+.. .. ..+..-+
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 44444211 122346999999999999999889999999999999997654322 11 2345568
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCcc--ceEEEEECCCCCeEEEEeCCCcEEEeecccCCCC
Q 007283 191 VNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKG--SVYAVSWSPDGKQVLTASADKSAKVWDISEDNHG 268 (609)
Q Consensus 191 v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~--~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~ 268 (609)
++.++|+|||.+||+|+.||.|.+|+......--.+...++|.. .|+|+.||+||++|++-|.|+++++||++.. .
T Consensus 320 ~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~--k 397 (641)
T KOG0772|consen 320 VTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF--K 397 (641)
T ss_pred ceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc--c
Confidence 89999999999999999999999999643322222222357877 8999999999999999999999999999742 2
Q ss_pred ceEEEeccCCCCCccceEEEEEEc--CCeEEEEEc------CCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEE
Q 007283 269 KLKKTLTPSGSGGVDDMLVGCLWQ--NDFLVIVSL------GGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVI 340 (609)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 340 (609)
+.+.+...-.. ......|+|+ ..++++++. .|++.+|+....... ..+.-....|..+.|++.-+ +|
T Consensus 398 kpL~~~tgL~t---~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v-~ki~i~~aSvv~~~WhpkLN-Qi 472 (641)
T KOG0772|consen 398 KPLNVRTGLPT---PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTV-YKIDISTASVVRCLWHPKLN-QI 472 (641)
T ss_pred cchhhhcCCCc---cCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeE-EEecCCCceEEEEeecchhh-he
Confidence 22222111100 0011223444 335555543 366777775443221 22223356677778876543 56
Q ss_pred EEEecCCcEEEE
Q 007283 341 LSSSYDGLIVKW 352 (609)
Q Consensus 341 ~t~s~dg~i~~W 352 (609)
..++.||+++++
T Consensus 473 ~~gsgdG~~~vy 484 (641)
T KOG0772|consen 473 FAGSGDGTAHVY 484 (641)
T ss_pred eeecCCCceEEE
Confidence 667778998876
No 94
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=3.2e-24 Score=217.30 Aligned_cols=208 Identities=13% Similarity=0.210 Sum_probs=167.8
Q ss_pred ccccCCCCcEEEEECC-CCCEEEEEeCCCcEEEEcCCCCce------eeEEEeecccceeEEEECCCC-CEEEEEECCCC
Q 007283 52 IYGEHAYPATVARFSP-NGEWIASADVSGTVRIWGAHNDHV------LKKEFRVLSGRIDDLQWSPDG-LRIVACGDGKG 123 (609)
Q Consensus 52 ~~~~h~~~v~~~~~sp-~g~~las~~~d~~i~vWd~~~~~~------~~~~~~~~~~~v~~~~~spdg-~~l~~~~~~~~ 123 (609)
.+.+|.+.|++++|+| ++++||+|+.|++|+|||+.++.. ....+.+|...|.+++|+|++ ..|++++.+.
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg- 148 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM- 148 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC-
Confidence 4789999999999999 899999999999999999976421 234577899999999999986 5677766433
Q ss_pred cceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccc-eEEEEEcCCCCE
Q 007283 124 KSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNF-VNCVRFSPDGSK 202 (609)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~-v~~l~~s~dg~~ 202 (609)
.+++|+...+..+..+.+|...|.+++|+|++. .+++++.|+.+++||...++....+.+|... +..+.|.+++..
T Consensus 149 --tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ 225 (493)
T PTZ00421 149 --VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDL 225 (493)
T ss_pred --EEEEEECCCCeEEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCe
Confidence 578888888888888999999999999999987 4999999999999999988888888888764 456789998887
Q ss_pred EEEEe----CCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEe-CCCcEEEeeccc
Q 007283 203 FISVS----SDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTAS-ADKSAKVWDISE 264 (609)
Q Consensus 203 l~s~~----~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s-~d~~i~iwd~~~ 264 (609)
|++++ .|+.+++||.++......... ..+...+....|+|++.+|++++ .|+.|++||+..
T Consensus 226 ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~-~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 226 IITLGCSKSQQRQIMLWDTRKMASPYSTVD-LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred EEEEecCCCCCCeEEEEeCCCCCCceeEec-cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 77765 478999999876543221111 12334566778999999999887 599999999974
No 95
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1e-24 Score=191.74 Aligned_cols=274 Identities=20% Similarity=0.318 Sum_probs=194.1
Q ss_pred cccceEEEEEcCC-CCEEEEEeCCCcEEEEeCCCC-ccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeeccc
Q 007283 187 HSNFVNCVRFSPD-GSKFISVSSDKKGIIYDGKTA-DKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE 264 (609)
Q Consensus 187 h~~~v~~l~~s~d-g~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~ 264 (609)
..+.|.+|+|||. ..+++.+|.|++|++|+++.. ..+. .....|.++|.+++|+.||..+++|+-|+.+++||+..
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~--ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP--KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc--hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 4567999999994 557778999999999998874 3332 22346899999999999999999999999999999863
Q ss_pred CCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCC-CCEEEEE
Q 007283 265 DNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNID-PKVILSS 343 (609)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~~t~ 343 (609)
+ +. .+...|...|..+.+.... -..++||
T Consensus 104 ~---Q~-----------------------------------------------~~v~~Hd~pvkt~~wv~~~~~~cl~TG 133 (347)
T KOG0647|consen 104 G---QV-----------------------------------------------SQVAAHDAPVKTCHWVPGMNYQCLVTG 133 (347)
T ss_pred C---Ce-----------------------------------------------eeeeecccceeEEEEecCCCcceeEec
Confidence 2 11 1223477777777777432 2578999
Q ss_pred ecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcE
Q 007283 344 SYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPEL 423 (609)
Q Consensus 344 s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (609)
|.|.+|+.||........ .....++..+.......++.+..+..|..+.+++.-..+.
T Consensus 134 SWDKTlKfWD~R~~~pv~-t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k--------------------- 191 (347)
T KOG0647|consen 134 SWDKTLKFWDTRSSNPVA-TLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFK--------------------- 191 (347)
T ss_pred ccccceeecccCCCCeee-eeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhh---------------------
Confidence 999999999875321111 0111122222222233344455555555555543221000
Q ss_pred EEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCC---------ce
Q 007283 424 VLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRG---------AV 494 (609)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~---------~i 494 (609)
...-.+++.+.|+++.+|....|.|+-+|.+.+..+..+.......++.|.. .|
T Consensus 192 -----------------~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaV 254 (347)
T KOG0647|consen 192 -----------------RIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAV 254 (347)
T ss_pred -----------------hhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEe
Confidence 0001134568899999999999999999999999997754344566777763 58
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEE
Q 007283 495 SVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATG 552 (609)
Q Consensus 495 ~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~ 552 (609)
++|+|.|.-..|++++.||+.-+||-.. +.+++....|..+|+|++|+.+|.++|-+
T Consensus 255 Nsi~FhP~hgtlvTaGsDGtf~FWDkda-r~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 255 NSIAFHPVHGTLVTAGSDGTFSFWDKDA-RTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred cceEeecccceEEEecCCceEEEecchh-hhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 8999999999999999999999999543 33455667799999999999999988755
No 96
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=1.9e-23 Score=212.37 Aligned_cols=124 Identities=18% Similarity=0.271 Sum_probs=105.4
Q ss_pred CeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCc--------eeeeccCcccceEEEEEcCCCCE-EEEE
Q 007283 136 TNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFK--------FKLSHRGHSNFVNCVRFSPDGSK-FISV 206 (609)
Q Consensus 136 ~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~--------~~~~~~~h~~~v~~l~~s~dg~~-l~s~ 206 (609)
..+..+.+|.+.|.+++|+|+...+|++|+.|+.|++|+.+... ....+.+|...|.+++|+|++.. |+++
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence 44566889999999999999855579999999999999986432 22356789999999999999875 5789
Q ss_pred eCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283 207 SSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS 263 (609)
Q Consensus 207 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~ 263 (609)
+.|++++|||+++++.+..+ .|...|.+++|+|+|.+|++++.|++|++||++
T Consensus 145 S~DgtIrIWDl~tg~~~~~i----~~~~~V~SlswspdG~lLat~s~D~~IrIwD~R 197 (568)
T PTZ00420 145 GFDSFVNIWDIENEKRAFQI----NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPR 197 (568)
T ss_pred eCCCeEEEEECCCCcEEEEE----ecCCcEEEEEECCCCCEEEEEecCCEEEEEECC
Confidence 99999999999988766554 255789999999999999999999999999986
No 97
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.4e-24 Score=209.65 Aligned_cols=275 Identities=20% Similarity=0.303 Sum_probs=214.8
Q ss_pred EEEECCCCCEEEEEECCCCcceEEEEEcC--CCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceee
Q 007283 105 DLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKL 182 (609)
Q Consensus 105 ~~~~spdg~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~ 182 (609)
-+.||..+... ++.+. .++.|+ .+........+...|+++.|+++|.. ||+|..++.+.+||....+...
T Consensus 182 lldWss~n~la--Valg~-----~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~-LavG~~~g~v~iwD~~~~k~~~ 253 (484)
T KOG0305|consen 182 LLDWSSANVLA--VALGQ-----SVYLWSASSGSVTELCSFGEELVTSVKWSPDGSH-LAVGTSDGTVQIWDVKEQKKTR 253 (484)
T ss_pred HhhcccCCeEE--EEecc-----eEEEEecCCCceEEeEecCCCceEEEEECCCCCE-EEEeecCCeEEEEehhhccccc
Confidence 46788655433 33333 255665 34433333444789999999999985 9999999999999999888888
Q ss_pred eccC-cccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEee
Q 007283 183 SHRG-HSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWD 261 (609)
Q Consensus 183 ~~~~-h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd 261 (609)
.+.+ |...|-+++|. +..+.+|+.|+.|..+|++..+..... ..+|...|..+.|++|+.+||+|+.|+.+.|||
T Consensus 254 ~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~--~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd 329 (484)
T KOG0305|consen 254 TLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVST--LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWD 329 (484)
T ss_pred cccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhh--hhcccceeeeeEECCCCCeeccCCCccceEecc
Confidence 8888 99999999998 557899999999999999988766551 358999999999999999999999999999999
Q ss_pred cccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEE
Q 007283 262 ISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVIL 341 (609)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 341 (609)
.... .+...+..|...|.+++|++-.+.+||
T Consensus 330 ~~~~-------------------------------------------------~p~~~~~~H~aAVKA~awcP~q~~lLA 360 (484)
T KOG0305|consen 330 GLSP-------------------------------------------------EPKFTFTEHTAAVKALAWCPWQSGLLA 360 (484)
T ss_pred CCCc-------------------------------------------------cccEEEeccceeeeEeeeCCCccCceE
Confidence 6311 112345569999999999988888999
Q ss_pred EEe--cCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeecc
Q 007283 342 SSS--YDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALH 419 (609)
Q Consensus 342 t~s--~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (609)
+|+ .|++|++|+...+..
T Consensus 361 sGGGs~D~~i~fwn~~~g~~------------------------------------------------------------ 380 (484)
T KOG0305|consen 361 TGGGSADRCIKFWNTNTGAR------------------------------------------------------------ 380 (484)
T ss_pred EcCCCcccEEEEEEcCCCcE------------------------------------------------------------
Confidence 866 799999997643210
Q ss_pred CCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEE--eCCCcEEEEEecCCeeeeeEEEecCCCceEEE
Q 007283 420 YPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIG--SQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVI 497 (609)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~g--s~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v 497 (609)
+..+.....|..+.+++..+.++++ ..+..|.||++.+-. ....+.+|...|..+
T Consensus 381 ---------------------i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~--~~~~l~gH~~RVl~l 437 (484)
T KOG0305|consen 381 ---------------------IDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMK--LVAELLGHTSRVLYL 437 (484)
T ss_pred ---------------------ecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccc--eeeeecCCcceeEEE
Confidence 0111112347778888888776664 556799999987643 356789999999999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEccCC
Q 007283 498 RYSPDVSMFASGDVNREAIVWDRVSR 523 (609)
Q Consensus 498 ~~s~~~~~l~s~s~d~~v~iwd~~~~ 523 (609)
++||||..+++|+.|.++++|++-..
T Consensus 438 a~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 438 ALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EECCCCCEEEEecccCcEEeccccCC
Confidence 99999999999999999999997653
No 98
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=7e-25 Score=224.42 Aligned_cols=209 Identities=22% Similarity=0.327 Sum_probs=158.4
Q ss_pred CcCce-eEEeecCCCCeEEEeC---CCEEEEEeCCC------------CccccccccCCCCcEEEEECCCCCEEEEEeCC
Q 007283 15 ERGRG-ILISGHPKSNSILYTN---GRSVIILDLSN------------PLQVSIYGEHAYPATVARFSPNGEWIASADVS 78 (609)
Q Consensus 15 ~~~~~-~~~~~~~~~~~l~~~~---~~~~~i~~~~~------------~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d 78 (609)
|++.. +.|..||||..+++++ ++.++||+... ++.+.....|.+.|+|++|||||+|||+|+.|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 34444 4899999999888765 24556887541 33445567899999999999999999999999
Q ss_pred CcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCC
Q 007283 79 GTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRP 158 (609)
Q Consensus 79 ~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 158 (609)
+-|.||+.... . ...+..+..|. ...+.-+....+.+|...|..+.|+|++.
T Consensus 91 ~~v~iW~~~~~-~-----------~~~~fgs~g~~----------------~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~ 142 (942)
T KOG0973|consen 91 RLVMIWERAEI-G-----------SGTVFGSTGGA----------------KNVESWKVVSILRGHDSDVLDVNWSPDDS 142 (942)
T ss_pred ceEEEeeeccc-C-----------Ccccccccccc----------------cccceeeEEEEEecCCCccceeccCCCcc
Confidence 99999987641 0 11111111111 01112245667889999999999999887
Q ss_pred eEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCC---CCccc
Q 007283 159 FRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPED---GHKGS 235 (609)
Q Consensus 159 ~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---~h~~~ 235 (609)
+ +|+++.|+.|.+|+..+++....+.+|...|..+.|.|-|++||+=++|++++||...+......+.... .-...
T Consensus 143 ~-lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~ 221 (942)
T KOG0973|consen 143 L-LVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTF 221 (942)
T ss_pred E-EEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcce
Confidence 5 9999999999999999999999999999999999999999999999999999999865543333332111 12345
Q ss_pred eEEEEECCCCCeEEEEe
Q 007283 236 VYAVSWSPDGKQVLTAS 252 (609)
Q Consensus 236 V~~l~~spd~~~l~s~s 252 (609)
+..+.|||||.+|++.-
T Consensus 222 f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 222 FLRLSWSPDGHHLASPN 238 (942)
T ss_pred eeecccCCCcCeecchh
Confidence 78999999999999874
No 99
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.3e-23 Score=182.81 Aligned_cols=291 Identities=18% Similarity=0.233 Sum_probs=218.7
Q ss_pred cccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEc
Q 007283 53 YGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMW 132 (609)
Q Consensus 53 ~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 132 (609)
|..-.+.|+++.|+++|.+|++++.|.+++|+|..+++.++ .+....-.+..++|......++.... +....+|+...
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~-ti~skkyG~~~~~Fth~~~~~i~sSt-k~d~tIryLsl 87 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK-TINSKKYGVDLACFTHHSNTVIHSST-KEDDTIRYLSL 87 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee-EeecccccccEEEEecCCceEEEccC-CCCCceEEEEe
Confidence 44446679999999999999999999999999999887543 34444557888999887766666553 44457888888
Q ss_pred CCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcE
Q 007283 133 DSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKG 212 (609)
Q Consensus 133 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i 212 (609)
.+++.+.-|.||...|.++..+|-+. .+++++.|.++++||.+..++...+.-.. -..++|.|+|-.+|++.....|
T Consensus 88 ~dNkylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~pi~AfDp~GLifA~~~~~~~I 164 (311)
T KOG1446|consen 88 HDNKYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNLSG--RPIAAFDPEGLIFALANGSELI 164 (311)
T ss_pred ecCceEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEecCC--CcceeECCCCcEEEEecCCCeE
Confidence 89999999999999999999999986 59999999999999998766654443322 3457899999999999888899
Q ss_pred EEEeCCCCc--cccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEE
Q 007283 213 IIYDGKTAD--KIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL 290 (609)
Q Consensus 213 ~iwd~~~~~--~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (609)
++||.+.-. ...++....+-..+.+.+.|||||++|+.+...+.+++.|.- .|..+.++...........-.++.
T Consensus 165 kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf---~G~~~~tfs~~~~~~~~~~~a~ft 241 (311)
T KOG1446|consen 165 KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAF---DGTVKSTFSGYPNAGNLPLSATFT 241 (311)
T ss_pred EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEcc---CCcEeeeEeeccCCCCcceeEEEC
Confidence 999987643 222333333456789999999999999999999999999875 455666664433222111222233
Q ss_pred EcCCeEEEEEcCCcEEEEeCCCCCCCceeeeC-CCCCeEEEEEecCCCCEEEEEecCCcEEEEecC
Q 007283 291 WQNDFLVIVSLGGTISIFSANDLEKSPLQLSG-HMKNVTALTVLNIDPKVILSSSYDGLIVKWIQG 355 (609)
Q Consensus 291 ~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~ 355 (609)
.+++++++++.||+|++|++.... ....+.+ +...+.++.|. |+..+-.+.+..+.+|...
T Consensus 242 Pds~Fvl~gs~dg~i~vw~~~tg~-~v~~~~~~~~~~~~~~~fn---P~~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 242 PDSKFVLSGSDDGTIHVWNLETGK-KVAVLRGPNGGPVSCVRFN---PRYAMFVSASSNLVFWLPD 303 (311)
T ss_pred CCCcEEEEecCCCcEEEEEcCCCc-EeeEecCCCCCCccccccC---CceeeeeecCceEEEEecc
Confidence 456788899999999999986443 3344555 67788888764 3566666778889999654
No 100
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=1.1e-25 Score=205.90 Aligned_cols=290 Identities=22% Similarity=0.317 Sum_probs=226.6
Q ss_pred ccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCce-eeEEEeecccceeEEEECCCCCEEEEEECCCCcceEE
Q 007283 50 VSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHV-LKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVR 128 (609)
Q Consensus 50 ~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~-~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~ 128 (609)
...+..|.+.|..+.|-++...|++|+.|.-|++|++...+. +...+.+..++|+.+.|.++++++++.+.++ ..+
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~---~~r 244 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDK---NLR 244 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCC---cee
Confidence 345678999999999999999999999999999999886652 2345666678899999999999999887655 367
Q ss_pred EEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeC
Q 007283 129 AFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSS 208 (609)
Q Consensus 129 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~ 208 (609)
+|..+......++.+|++.|+++.|..... ++++|++|.+++.||.....+..+... ...+..+..+ ...++++-.
T Consensus 245 ~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~ 320 (459)
T KOG0288|consen 245 LWNVDSLRLRHTLSGHTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHF 320 (459)
T ss_pred eeeccchhhhhhhcccccceeeehhhcccc-ceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeeccc
Confidence 888888888889999999999999987665 499999999999999887666655332 2334555554 446788889
Q ss_pred CCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEE
Q 007283 209 DKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVG 288 (609)
Q Consensus 209 d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (609)
|++|++||.++..+...+. . .+.|+++..++++..+++++.|.++.+.|++. ....+++.
T Consensus 321 DkkvRfwD~Rs~~~~~sv~---~-gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt---~eI~~~~s------------- 380 (459)
T KOG0288|consen 321 DKKVRFWDIRSADKTRSVP---L-GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRT---KEIRQTFS------------- 380 (459)
T ss_pred ccceEEEeccCCceeeEee---c-CcceeeEeeccCCeEEeeecCCCceeeeeccc---ccEEEEee-------------
Confidence 9999999999988776653 2 35899999999999999999999999999862 11111110
Q ss_pred EEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecccccc
Q 007283 289 CLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENS 368 (609)
Q Consensus 289 ~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~ 368 (609)
.. .+ -++
T Consensus 381 ---------------------------------------------A~--g~-k~a------------------------- 387 (459)
T KOG0288|consen 381 ---------------------------------------------AE--GF-KCA------------------------- 387 (459)
T ss_pred ---------------------------------------------cc--cc-ccc-------------------------
Confidence 00 00 000
Q ss_pred ceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCC
Q 007283 369 QIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRF 448 (609)
Q Consensus 369 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (609)
.
T Consensus 388 -------------------------------------------------------------------------------s 388 (459)
T KOG0288|consen 388 -------------------------------------------------------------------------------S 388 (459)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEE
Q 007283 449 PVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVW 518 (609)
Q Consensus 449 ~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iw 518 (609)
..+.+.|||++.|+|+||.||.|+||++.++++............|++++|+|-|..+++++.++.+.+|
T Consensus 389 DwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 389 DWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 1355678999999999999999999999998875433333223379999999999999999999999999
No 101
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=2.8e-24 Score=189.38 Aligned_cols=297 Identities=15% Similarity=0.184 Sum_probs=216.7
Q ss_pred EEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCC-----------------C-ceeeeccCcccceEEEEEcCCC
Q 007283 139 GEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP-----------------F-KFKLSHRGHSNFVNCVRFSPDG 200 (609)
Q Consensus 139 ~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~-----------------~-~~~~~~~~h~~~v~~l~~s~dg 200 (609)
..+..|..++.+.+|+|||.+ +|||+.|..|++.|.+. . ..++++..|...|+++.|+|..
T Consensus 106 ~ylt~HK~~cR~aafs~DG~l-vATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSL-VATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred EEEeecccceeeeeeCCCCcE-EEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 346789999999999999985 99999999999998651 0 2356678899999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCC
Q 007283 201 SKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSG 280 (609)
Q Consensus 201 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 280 (609)
..|++++.|++++++|.........++.. .-...|.+++|+|.|.+|+.|..-.++++||++. . +.+...
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T---~---Qcfvsa--- 254 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT---Y---QCFVSA--- 254 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccc---e---eEeeec---
Confidence 99999999999999998654332222211 2345799999999999999999999999999862 1 111000
Q ss_pred CccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccc
Q 007283 281 GVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGG 360 (609)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~ 360 (609)
..-..|+..|.++.+++ .+++.+|+|.||.|++||-..+...
T Consensus 255 -------------------------------------nPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv 296 (430)
T KOG0640|consen 255 -------------------------------------NPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCV 296 (430)
T ss_pred -------------------------------------CcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHH
Confidence 01135889999999874 5679999999999999964322110
Q ss_pred eeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCee
Q 007283 361 KLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEV 440 (609)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (609)
.....
T Consensus 297 ~t~~~--------------------------------------------------------------------------- 301 (430)
T KOG0640|consen 297 RTIGN--------------------------------------------------------------------------- 301 (430)
T ss_pred HHHHh---------------------------------------------------------------------------
Confidence 00000
Q ss_pred eEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCc---eEEEEECCCCCEEEEE-eCCCeEE
Q 007283 441 VSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGA---VSVIRYSPDVSMFASG-DVNREAI 516 (609)
Q Consensus 441 ~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~---i~~v~~s~~~~~l~s~-s~d~~v~ 516 (609)
-..+..+.+..|+-||+++.+.+.|..+++|++.++......+-.+-.+. -+...|+....|+..- -..+.+-
T Consensus 302 ---AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slc 378 (430)
T KOG0640|consen 302 ---AHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLC 378 (430)
T ss_pred ---hcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCcee
Confidence 00012466777899999999999999999999988865432222211221 1223355555555443 2456688
Q ss_pred EEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEE
Q 007283 517 VWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYE 562 (609)
Q Consensus 517 iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~ 562 (609)
-||..+.........+|++.+.++.-||.+.-+.|++.|-..++|-
T Consensus 379 sWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 379 SWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred eccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 8998776655445578999999999999999999999999999995
No 102
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=3.2e-24 Score=217.31 Aligned_cols=277 Identities=26% Similarity=0.394 Sum_probs=228.2
Q ss_pred CCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCC
Q 007283 56 HAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSG 135 (609)
Q Consensus 56 h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~ 135 (609)
|...+.+..|. +.++++++.|.+|++||..++..+...+.+|.+.|.+++|...+..|+++..++ .+++|+..++
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~---t~rvWd~~sg 281 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDK---TERVWDCSTG 281 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCC---cEEeEecCCC
Confidence 45668888888 678999999999999999998877777999999999999998677788766444 5788998899
Q ss_pred CeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 007283 136 TNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIY 215 (609)
Q Consensus 136 ~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iw 215 (609)
.+..++.+|..-|.++...+ ..+++|+.|.++++|+.+++.+...+.+|..+|.++.++ +.++++|+.|++|++|
T Consensus 282 ~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW 356 (537)
T KOG0274|consen 282 ECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVW 356 (537)
T ss_pred cEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEE
Confidence 99999999999999998765 368889999999999999999999999999999999997 6799999999999999
Q ss_pred eCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCe
Q 007283 216 DGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDF 295 (609)
Q Consensus 216 d~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (609)
|..+++++..+. +|++.|+++.+.+. .++++|+.|++|++||+.... +.+.++.... ..+......++.
T Consensus 357 ~~~~~~cl~sl~---gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--~c~~tl~~h~-----~~v~~l~~~~~~ 425 (537)
T KOG0274|consen 357 DPRTGKCLKSLS---GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--KCIHTLQGHT-----SLVSSLLLRDNF 425 (537)
T ss_pred Ehhhceeeeeec---CCcceEEEEEecCc-ceEEeeeeccceEeecCCchh--hhhhhhcCCc-----ccccccccccce
Confidence 999999988874 89999999988765 889999999999999997421 3444443221 112223345778
Q ss_pred EEEEEcCCcEEEEeCCCCCCCceeeeC-CCCCeEEEEEecCCCCEEEEEecCCcEEEEecCcc
Q 007283 296 LVIVSLGGTISIFSANDLEKSPLQLSG-HMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIG 357 (609)
Q Consensus 296 ~~~~~~~g~i~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~ 357 (609)
+++.+.|++|++|+..+.+ ....+.+ |...|..+... ...+++++.|+++++|++..+
T Consensus 426 Lvs~~aD~~Ik~WD~~~~~-~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~~~~l~dl~~~ 484 (537)
T KOG0274|consen 426 LVSSSADGTIKLWDAEEGE-CLRTLEGRHVGGVSALALG---KEEILCSSDDGSVKLWDLRSG 484 (537)
T ss_pred eEeccccccEEEeecccCc-eeeeeccCCcccEEEeecC---cceEEEEecCCeeEEEecccC
Confidence 9999999999999877543 3345566 66788777753 357999999999999987654
No 103
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.94 E-value=3.2e-23 Score=199.16 Aligned_cols=152 Identities=21% Similarity=0.351 Sum_probs=118.9
Q ss_pred CCceeEEEEcC-CCCEEEEEeCCCcEEEEEecCCee-----eeeEEEecCCCceEEEEECCC-CCEEEEEeCCCeEEEEE
Q 007283 447 RFPVTASAIAP-DGSEAIIGSQDGKLRVYSIRGDTL-----TEEAVLEKHRGAVSVIRYSPD-VSMFASGDVNREAIVWD 519 (609)
Q Consensus 447 ~~~~~~~~~sp-~g~~l~~gs~dg~i~iw~~~~~~~-----~~~~~~~~h~~~i~~v~~s~~-~~~l~s~s~d~~v~iwd 519 (609)
+..|+.+.+.| |.+.||+++.||.|++|.+..+.+ ....++..|...|.++.|+|= ...|++++.|.+|++||
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 34577788888 778899999999999999976643 345678999999999999996 57889999999999999
Q ss_pred ccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEecccc-CCeEEEEEc-CCCeEEEEeC
Q 007283 520 RVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHL-GGVYGLAFT-DEHSVVSSGE 597 (609)
Q Consensus 520 ~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~-~~v~~~~~s-~~~~l~s~s~ 597 (609)
+.+..... .+.+|++.|..++|||||+++||.+.||+|+||+-.... +.+.--.|.. .+=..+.|. |+++++..|-
T Consensus 707 l~~~~~~~-~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e-~pv~Eg~gpvgtRgARi~wacdgr~viv~Gf 784 (1012)
T KOG1445|consen 707 LANAKLYS-RLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE-QPVYEGKGPVGTRGARILWACDGRIVIVVGF 784 (1012)
T ss_pred hhhhhhhh-eeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC-CccccCCCCccCcceeEEEEecCcEEEEecc
Confidence 98876543 478999999999999999999999999999999875422 1111111111 223456676 8999988887
Q ss_pred CCc
Q 007283 598 DAC 600 (609)
Q Consensus 598 D~~ 600 (609)
|++
T Consensus 785 dk~ 787 (1012)
T KOG1445|consen 785 DKS 787 (1012)
T ss_pred ccc
Confidence 764
No 104
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6e-25 Score=212.00 Aligned_cols=339 Identities=19% Similarity=0.247 Sum_probs=235.9
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCce-----eeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCC--CeeE
Q 007283 67 PNGEWIASADVSGTVRIWGAHNDHV-----LKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSG--TNVG 139 (609)
Q Consensus 67 p~g~~las~~~d~~i~vWd~~~~~~-----~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~--~~~~ 139 (609)
|+++||.||+.||.|++|+...... ....+..|+..|..++.--+|+.|++++.+. .+++|.-... .+..
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDt---TVK~W~~~~~~~~c~s 111 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDT---TVKVWNAHKDNTFCMS 111 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCc---eEEEeecccCcchhHh
Confidence 6889999999999999998864332 2334667888999999999999999988655 3455554444 4566
Q ss_pred EEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCce--e--------eecc-CcccceEEEEEcCCCCEEEEEeC
Q 007283 140 EFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKF--K--------LSHR-GHSNFVNCVRFSPDGSKFISVSS 208 (609)
Q Consensus 140 ~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~--~--------~~~~-~h~~~v~~l~~s~dg~~l~s~~~ 208 (609)
++..|.+.|.++++...+...+|+||-|+.|++||...+.. . ..+. |+...|.+++-++.|..|++|+.
T Consensus 112 tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgt 191 (735)
T KOG0308|consen 112 TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGT 191 (735)
T ss_pred hhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCc
Confidence 78899999999999434445799999999999999875521 1 1233 88999999999999999999999
Q ss_pred CCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEE
Q 007283 209 DKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVG 288 (609)
Q Consensus 209 d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (609)
.+.+++||.++.+.+..+ .||+..|..+..++||+.++++|.||+|++||+.. .+...
T Consensus 192 ek~lr~wDprt~~kimkL---rGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgq---QrCl~---------------- 249 (735)
T KOG0308|consen 192 EKDLRLWDPRTCKKIMKL---RGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQ---QRCLA---------------- 249 (735)
T ss_pred ccceEEeccccccceeee---eccccceEEEEEcCCCCeEeecCCCceEEeeeccc---cceee----------------
Confidence 999999999999988777 39999999999999999999999999999999862 22221
Q ss_pred EEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecccccc
Q 007283 289 CLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENS 368 (609)
Q Consensus 289 ~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~ 368 (609)
++..|.+.|+++...+ +=..+++|+.||.|..=++.+........+++.
T Consensus 250 ------------------------------T~~vH~e~VWaL~~~~-sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~da 298 (735)
T KOG0308|consen 250 ------------------------------TYIVHKEGVWALQSSP-SFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDA 298 (735)
T ss_pred ------------------------------eEEeccCceEEEeeCC-CcceEEecCCCCcEEecccCCchhheEeecCCC
Confidence 2334677777777652 225789999999998776654322222222233
Q ss_pred ceeEeee--eCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEee-CCeeeEEec
Q 007283 369 QIKCFAA--IEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLR-GAEVVSTIN 445 (609)
Q Consensus 369 ~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 445 (609)
++..+.. .++.+.++..|..|.+|....... +.... +.....++....... ....-..+.
T Consensus 299 Pv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~----------------l~~s~-~~~~~~T~~~~~~~~~~~tp~~vi~ 361 (735)
T KOG0308|consen 299 PVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIA----------------LSVSG-DLDFFSTDSNNHSCDLTNTPDSVIP 361 (735)
T ss_pred chhhhhhccccCCceeeeccccceecCCccccc----------------cccCC-CCCcccccCCCccccccCCCceecc
Confidence 3333322 245567888899999987543221 00000 000011111111110 001111222
Q ss_pred cCCceeEEEEcCCCCEEEEEeCCCcEEEEEecC
Q 007283 446 LRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRG 478 (609)
Q Consensus 446 ~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~ 478 (609)
.+..+...++-.|.+++++-..+|.+.+||+-.
T Consensus 362 Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~ 394 (735)
T KOG0308|consen 362 GGAAIKKHAMLNDKRHVLTKDAKGNVALWDILA 394 (735)
T ss_pred CchhhhhhhhhcCcceEeeecCCCCEEEEEeee
Confidence 334455556677899999999999999999854
No 105
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=3.1e-24 Score=208.72 Aligned_cols=282 Identities=21% Similarity=0.283 Sum_probs=215.4
Q ss_pred ceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEE-EEECC-CCCeEEEEeCCCc
Q 007283 179 KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYA-VSWSP-DGKQVLTASADKS 256 (609)
Q Consensus 179 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~-l~~sp-d~~~l~s~s~d~~ 256 (609)
+..+.+.||...|..+++.+.. .++++|.|+++++|+...++.+.... ..+|.+.|.. +++-+ ++-.|++|+.|.+
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~-~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHA-FEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCccccccee-cccCcceeeccceeccccCcceEeecccce
Confidence 4566788999999988887665 78999999999999876655544322 3467777766 78775 4556999999999
Q ss_pred EEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCC
Q 007283 257 AKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNID 336 (609)
Q Consensus 257 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 336 (609)
+.+|.+.. ..+...+.||..+|.++.....
T Consensus 83 i~v~~~~~-------------------------------------------------~~P~~~LkgH~snVC~ls~~~~- 112 (745)
T KOG0301|consen 83 IIVFKLSQ-------------------------------------------------AEPLYTLKGHKSNVCSLSIGED- 112 (745)
T ss_pred EEEEecCC-------------------------------------------------CCchhhhhccccceeeeecCCc-
Confidence 99998642 1123457899999999876432
Q ss_pred CCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEe
Q 007283 337 PKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSV 416 (609)
Q Consensus 337 ~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (609)
..++|||.|.++++|..+....
T Consensus 113 -~~~iSgSWD~TakvW~~~~l~~--------------------------------------------------------- 134 (745)
T KOG0301|consen 113 -GTLISGSWDSTAKVWRIGELVY--------------------------------------------------------- 134 (745)
T ss_pred -CceEecccccceEEecchhhhc---------------------------------------------------------
Confidence 3489999999999994321000
Q ss_pred eccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEE
Q 007283 417 ALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSV 496 (609)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~ 496 (609)
....|...|.+++.-|++ .+++||.|.+|++|.- +.+ ..++.+|..-|..
T Consensus 135 -------------------------~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~--l~tf~gHtD~VRg 184 (745)
T KOG0301|consen 135 -------------------------SLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTL--LKTFSGHTDCVRG 184 (745)
T ss_pred -------------------------ccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cch--hhhhccchhheee
Confidence 000123457888888888 7999999999999964 333 4688999999999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEecc
Q 007283 497 IRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGA 576 (609)
Q Consensus 497 v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~ 576 (609)
+++-|++ .|+|++.||.|++|+. +++. +..+.+|+.-|.+++..+++..+++.+.|+++++|+.+. ..+...-
T Consensus 185 L~vl~~~-~flScsNDg~Ir~w~~-~ge~-l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e----~~q~I~l 257 (745)
T KOG0301|consen 185 LAVLDDS-HFLSCSNDGSIRLWDL-DGEV-LLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDE----CVQVITL 257 (745)
T ss_pred eEEecCC-CeEeecCCceEEEEec-cCce-eeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCc----eEEEEec
Confidence 9997654 5788999999999997 4443 345789999999999989999999999999999999752 2233333
Q ss_pred ccCCeEEEEEcCCCeEEEEeCCCcEEEEEcc
Q 007283 577 HLGGVYGLAFTDEHSVVSSGEDACVRVWRLT 607 (609)
Q Consensus 577 h~~~v~~~~~s~~~~l~s~s~D~~i~~W~~~ 607 (609)
..-.||++.+....-|++|+.||.|++|..+
T Consensus 258 PttsiWsa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 258 PTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred CccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence 4458999998866668999999999999876
No 106
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=8.7e-24 Score=196.25 Aligned_cols=288 Identities=21% Similarity=0.314 Sum_probs=211.8
Q ss_pred eeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccc--------------cCcC-CCCccceEEEEECCCCC
Q 007283 182 LSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGE--------------LSPE-DGHKGSVYAVSWSPDGK 246 (609)
Q Consensus 182 ~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~--------------~~~~-~~h~~~V~~l~~spd~~ 246 (609)
.....|..++.|++++||+++..+++.+++|.-|++.+++.... +... .+|...|.+++.||||+
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 44567999999999999999999999999999999888774411 1112 27889999999999999
Q ss_pred eEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCC
Q 007283 247 QVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKN 326 (609)
Q Consensus 247 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~ 326 (609)
||++|+.|..|.||+..... ....+.+|.+.
T Consensus 216 ylatgg~d~~v~Iw~~~t~e-------------------------------------------------hv~~~~ghr~~ 246 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLE-------------------------------------------------HVKVFKGHRGA 246 (479)
T ss_pred EEEecCCCceEEEecCcccc-------------------------------------------------hhhcccccccc
Confidence 99999999999999975311 11235689999
Q ss_pred eEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccc
Q 007283 327 VTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSID 406 (609)
Q Consensus 327 v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~ 406 (609)
|.+++|-. +...+++++.|++|++|+.+.......
T Consensus 247 V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~vet-------------------------------------------- 281 (479)
T KOG0299|consen 247 VSSLAFRK-GTSELYSASADRSVKVWSIDQLSYVET-------------------------------------------- 281 (479)
T ss_pred eeeeeeec-CccceeeeecCCceEEEehhHhHHHHH--------------------------------------------
Confidence 99999864 346789999999999996542100000
Q ss_pred cCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEE
Q 007283 407 IGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAV 486 (609)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~ 486 (609)
.+.++..|..+....-++-+-+|..|+++++|++.... ..+
T Consensus 282 ------------------------------------lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees---qli 322 (479)
T KOG0299|consen 282 ------------------------------------LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES---QLI 322 (479)
T ss_pred ------------------------------------HhCCccceeeechhcccceEEeccccceeEEEeccccc---eee
Confidence 00011123333334445556677899999999996543 356
Q ss_pred EecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecC-----------CCCceEEEEECCCCcEEEEEeCC
Q 007283 487 LEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLY-----------HTARINCLAWSPNNSMVATGSLD 555 (609)
Q Consensus 487 ~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~-----------h~~~i~~l~~s~d~~~l~s~s~D 555 (609)
+.+|.+.+-|++|= +..++++||.||.|.+|++...+........ +...|++|+..|...++|+||.+
T Consensus 323 frg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~ 401 (479)
T KOG0299|consen 323 FRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWS 401 (479)
T ss_pred eeCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCC
Confidence 78999999999994 6678999999999999998766543222122 23489999999999999999999
Q ss_pred CeEEEEEcCCCCCcc--eeEeccccCCeEEEEEc-CCC-eEEEEeCCCcEEEE
Q 007283 556 TCVIIYEIDKPASSR--MTIKGAHLGGVYGLAFT-DEH-SVVSSGEDACVRVW 604 (609)
Q Consensus 556 ~~v~vw~~~~~~~~~--~~~~~~h~~~v~~~~~s-~~~-~l~s~s~D~~i~~W 604 (609)
|.|++|.+.....++ +.-+ .-.+.|++++|+ +++ .++..|....+=-|
T Consensus 402 G~vrLW~i~~g~r~i~~l~~l-s~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 402 GCVRLWKIEDGLRAINLLYSL-SLVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred CceEEEEecCCccccceeeec-ccccEEEEEEEccCCCEEEEeccccccccee
Confidence 999999997642111 1112 256789999998 776 55667877776444
No 107
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=4.4e-24 Score=196.53 Aligned_cols=286 Identities=16% Similarity=0.236 Sum_probs=215.2
Q ss_pred CCccCcCceeEEeecCCCCeEEEe-CCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCC
Q 007283 11 VPSTERGRGILISGHPKSNSILYT-NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHND 89 (609)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~ 89 (609)
+|+.....-+++...|..+.+.+. .+..++++|...+..+.+|.||...|+.+.|+|+-..+++++.|-.||||.+...
T Consensus 214 LH~t~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~ 293 (506)
T KOG0289|consen 214 LHSTSTPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS 293 (506)
T ss_pred eeccCCCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc
Confidence 444444444455555543444444 3468999999999999999999999999999999999999999999999998765
Q ss_pred ceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEec--CCccEEEEEEeeCCCeEEEEecCC
Q 007283 90 HVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDG--HSRRVLSCAFKPSRPFRIATCGED 167 (609)
Q Consensus 90 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~~i~t~~~d 167 (609)
. .....+.|.++|..+..+|.|+||++.++++ ..-..+...+.++..... ..-.+++.+|||||- +|++|..|
T Consensus 294 s-~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~---~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d 368 (506)
T KOG0289|consen 294 S-EPTSSRPHEEPVTGLSLHPTGEYLLSASNDG---TWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGTPD 368 (506)
T ss_pred c-CccccccccccceeeeeccCCcEEEEecCCc---eEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEeccCCC
Confidence 4 3445678999999999999999999988654 334455556666544332 223488999999996 69999999
Q ss_pred CeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCe
Q 007283 168 FLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQ 247 (609)
Q Consensus 168 ~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 247 (609)
+.+++||.........|.+|..+|..++|+.+|-+||++++|+.|++||.+.-+...++... ....|.++.|.+.|.+
T Consensus 369 ~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~--~~~~v~s~~fD~SGt~ 446 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLD--EKKEVNSLSFDQSGTY 446 (506)
T ss_pred ceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecc--ccccceeEEEcCCCCe
Confidence 99999999888888889999999999999999999999999999999999987766665432 2337999999999999
Q ss_pred EEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEE--cCCeEEEEEcCCcEEEEe
Q 007283 248 VLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW--QNDFLVIVSLGGTISIFS 309 (609)
Q Consensus 248 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~i~~~~ 309 (609)
|+.++.|=+|++++-...++..........+ ...+..+ ...+++.++.+..++++.
T Consensus 447 L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg------~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 447 LGIAGSDLQVYICKKKTKSWTEIKELADHSG------LSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred EEeecceeEEEEEecccccceeeehhhhccc------ccceeeecccceEEeeccchhheEEee
Confidence 9999988888887744333332222111110 1111222 234667777777766664
No 108
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.4e-24 Score=207.86 Aligned_cols=271 Identities=22% Similarity=0.348 Sum_probs=211.1
Q ss_pred EEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecc
Q 007283 21 LISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLS 100 (609)
Q Consensus 21 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~ 100 (609)
.+..+ ..+.++-.-|..+++|+-.++.......-+++.|+++.++|+|++||.|-.+|+|+|||..+.+...
T Consensus 182 lldWs-s~n~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~------- 253 (484)
T KOG0305|consen 182 LLDWS-SANVLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTR------- 253 (484)
T ss_pred Hhhcc-cCCeEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccc-------
Confidence 34555 4567888889999999999888655555558899999999999999999999999999987654211
Q ss_pred cceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEec-CCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCc
Q 007283 101 GRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDG-HSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFK 179 (609)
Q Consensus 101 ~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~ 179 (609)
.+.+ |..+|-+++|.. .++.+|+.|+.|..+|.+..+
T Consensus 254 ---------------------------------------~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~ 291 (484)
T KOG0305|consen 254 ---------------------------------------TLRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQ 291 (484)
T ss_pred ---------------------------------------cccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecch
Confidence 1223 667777777762 368899999999999987665
Q ss_pred eeee-ccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCC-CCeEEEEe--CCC
Q 007283 180 FKLS-HRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD-GKQVLTAS--ADK 255 (609)
Q Consensus 180 ~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd-~~~l~s~s--~d~ 255 (609)
.... +.+|.+.|..+.|++|+.+||+|+.|+.+.|||....+....+ ..|.+.|.+++|+|- ..+||+|+ .|+
T Consensus 292 ~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~---~~H~aAVKA~awcP~q~~lLAsGGGs~D~ 368 (484)
T KOG0305|consen 292 HVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTF---TEHTAAVKALAWCPWQSGLLATGGGSADR 368 (484)
T ss_pred hhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEE---eccceeeeEeeeCCCccCceEEcCCCccc
Confidence 4444 8899999999999999999999999999999998666665555 379999999999995 45788875 499
Q ss_pred cEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCe--EEE--EEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEE
Q 007283 256 SAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDF--LVI--VSLGGTISIFSANDLEKSPLQLSGHMKNVTALT 331 (609)
Q Consensus 256 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~ 331 (609)
+|++||.. .+..+..+... ..+....|...+ +++ +..++.|.+|++... .....+.+|...|..++
T Consensus 369 ~i~fwn~~---~g~~i~~vdtg------sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-~~~~~l~gH~~RVl~la 438 (484)
T KOG0305|consen 369 CIKFWNTN---TGARIDSVDTG------SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-KLVAELLGHTSRVLYLA 438 (484)
T ss_pred EEEEEEcC---CCcEecccccC------CceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-ceeeeecCCcceeEEEE
Confidence 99999987 34444443221 245566787553 333 344578999998763 34567899999999999
Q ss_pred EecCCCCEEEEEecCCcEEEEecC
Q 007283 332 VLNIDPKVILSSSYDGLIVKWIQG 355 (609)
Q Consensus 332 ~~~~~~~~~~t~s~dg~i~~W~~~ 355 (609)
+++ ++..+++|+.|.++++|..-
T Consensus 439 ~SP-dg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 439 LSP-DGETIVTGAADETLRFWNLF 461 (484)
T ss_pred ECC-CCCEEEEecccCcEEecccc
Confidence 875 46799999999999999653
No 109
>PTZ00421 coronin; Provisional
Probab=99.93 E-value=2.1e-23 Score=211.28 Aligned_cols=202 Identities=18% Similarity=0.265 Sum_probs=162.7
Q ss_pred CCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCcee------------eEEEeecccceeEEEECC-CCCEEEEEECCC
Q 007283 56 HAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVL------------KKEFRVLSGRIDDLQWSP-DGLRIVACGDGK 122 (609)
Q Consensus 56 h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~------------~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~ 122 (609)
|-.+|+..+.++++..+++++.+.....|+...+... ...+.+|.+.|.+++|+| |+.+|++++++.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 3356777778888777777777777777775433211 023678899999999999 888888887644
Q ss_pred CcceEEEEEcCCC-------CeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEE
Q 007283 123 GKSLVRAFMWDSG-------TNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVR 195 (609)
Q Consensus 123 ~~~~~~~~~~~~~-------~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~ 195 (609)
.+++|+...+ ..+..+.+|...|.+++|+|++...+++++.|+.|++||..+.+....+.+|...|.+++
T Consensus 99 ---tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 99 ---TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred ---EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 4677776543 246678999999999999998766799999999999999998888888899999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccc-eEEEEECCCCCeEEEEe----CCCcEEEeecc
Q 007283 196 FSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGS-VYAVSWSPDGKQVLTAS----ADKSAKVWDIS 263 (609)
Q Consensus 196 ~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~-V~~l~~spd~~~l~s~s----~d~~i~iwd~~ 263 (609)
|+|+|.+|++++.|+.++|||.++++.+..+. +|.+. +..+.|.|++.++++++ .|+.|++||++
T Consensus 176 ~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~---~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr 245 (493)
T PTZ00421 176 WNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE---AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR 245 (493)
T ss_pred EECCCCEEEEecCCCEEEEEECCCCcEEEEEe---cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence 99999999999999999999999988776553 56654 45778999988887765 47899999986
No 110
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=2.7e-23 Score=211.26 Aligned_cols=222 Identities=14% Similarity=0.158 Sum_probs=172.9
Q ss_pred CEEEEEeCCCCccccccccCCCCcEEEEECCC-CCEEEEEeCCCcEEEEcCCCCce-------eeEEEeecccceeEEEE
Q 007283 37 RSVIILDLSNPLQVSIYGEHAYPATVARFSPN-GEWIASADVSGTVRIWGAHNDHV-------LKKEFRVLSGRIDDLQW 108 (609)
Q Consensus 37 ~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~-g~~las~~~d~~i~vWd~~~~~~-------~~~~~~~~~~~v~~~~~ 108 (609)
..+.+|+......+..+.+|.+.|.+++|+|+ +++||||+.|++|+|||+.++.. ....+..|...|.+++|
T Consensus 54 gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf 133 (568)
T PTZ00420 54 GAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDW 133 (568)
T ss_pred eEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEE
Confidence 46778888766666678899999999999997 89999999999999999975321 12346788899999999
Q ss_pred CCCCCEEE-EEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCc
Q 007283 109 SPDGLRIV-ACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGH 187 (609)
Q Consensus 109 spdg~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h 187 (609)
+|++..++ +++.+. .+++|+...+..+..+. |...|.+++|+|++.. +++++.|+.+++||...++....+.+|
T Consensus 134 ~P~g~~iLaSgS~Dg---tIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~l-Lat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 134 NPMNYYIMCSSGFDS---FVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNL-LSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred CCCCCeEEEEEeCCC---eEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCE-EEEEecCCEEEEEECCCCcEEEEEecc
Confidence 99998765 444332 57788887777666665 5678999999999985 888889999999999998888888889
Q ss_pred ccceE-----EEEEcCCCCEEEEEeCCC----cEEEEeCCC-CccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcE
Q 007283 188 SNFVN-----CVRFSPDGSKFISVSSDK----KGIIYDGKT-ADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSA 257 (609)
Q Consensus 188 ~~~v~-----~l~~s~dg~~l~s~~~d~----~i~iwd~~~-~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i 257 (609)
.+.+. ...|++++.+|++++.|+ .++|||.+. .+.+..+. ...+.+.+......+++.++++|+.|+.|
T Consensus 209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~-ld~~~~~L~p~~D~~tg~l~lsGkGD~tI 287 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS-IDNASAPLIPHYDESTGLIYLIGKGDGNC 287 (568)
T ss_pred cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE-ecCCccceEEeeeCCCCCEEEEEECCCeE
Confidence 86543 334568999999988774 799999885 44443332 22344555555556679999999999999
Q ss_pred EEeeccc
Q 007283 258 KVWDISE 264 (609)
Q Consensus 258 ~iwd~~~ 264 (609)
|+|++..
T Consensus 288 r~~e~~~ 294 (568)
T PTZ00420 288 RYYQHSL 294 (568)
T ss_pred EEEEccC
Confidence 9999863
No 111
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.9e-24 Score=184.35 Aligned_cols=267 Identities=22% Similarity=0.300 Sum_probs=197.2
Q ss_pred cCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCC---ceeeeccCcccceEEEEEcC--CCCEEEEEeCCCcEEEEeC
Q 007283 143 GHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF---KFKLSHRGHSNFVNCVRFSP--DGSKFISVSSDKKGIIYDG 217 (609)
Q Consensus 143 ~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~---~~~~~~~~h~~~v~~l~~s~--dg~~l~s~~~d~~i~iwd~ 217 (609)
.|.+-|-.....-.|. +||||+.|++|+++..++. +...++.||.++|..++|.+ .|.+||+++.||.++||..
T Consensus 9 ~H~D~IHda~lDyygk-rlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGK-RLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhHhhhhhhcc-eeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 5665555544444444 7999999999999986543 56778999999999999987 6999999999999999987
Q ss_pred CCCccccccCcCCCCccceEEEEECCC--CCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCe
Q 007283 218 KTADKIGELSPEDGHKGSVYAVSWSPD--GKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDF 295 (609)
Q Consensus 218 ~~~~~~~~~~~~~~h~~~V~~l~~spd--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (609)
+.+ ..........|.+.|++++|.|. |-.|++++.||.|.+.+.+.. +..
T Consensus 88 ~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~--g~w------------------------- 139 (299)
T KOG1332|consen 88 ENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS--GGW------------------------- 139 (299)
T ss_pred CCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC--CCc-------------------------
Confidence 777 45555556689999999999996 558999999999999987532 100
Q ss_pred EEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeee
Q 007283 296 LVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAA 375 (609)
Q Consensus 296 ~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~ 375 (609)
........|.-.|.++.+.+..- +|.+.
T Consensus 140 -------------------~t~ki~~aH~~GvnsVswapa~~--------~g~~~------------------------- 167 (299)
T KOG1332|consen 140 -------------------TTSKIVFAHEIGVNSVSWAPASA--------PGSLV------------------------- 167 (299)
T ss_pred -------------------cchhhhhccccccceeeecCcCC--------Ccccc-------------------------
Confidence 00122345666666666543210 00000
Q ss_pred eCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEE
Q 007283 376 IEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAI 455 (609)
Q Consensus 376 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (609)
. ....
T Consensus 168 ---------------------------~--------------------------------------------~~~~---- 172 (299)
T KOG1332|consen 168 ---------------------------D--------------------------------------------QGPA---- 172 (299)
T ss_pred ---------------------------c--------------------------------------------cCcc----
Confidence 0 0000
Q ss_pred cCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCC----CEEEEEeCCCeEEEEEccCC--ceEEee
Q 007283 456 APDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDV----SMFASGDVNREAIVWDRVSR--EVKLKN 529 (609)
Q Consensus 456 sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~----~~l~s~s~d~~v~iwd~~~~--~~~~~~ 529 (609)
.+ -+.|++|+-|..|+||+...+....+.++.+|++-|..++|.|.- .++||+|+||++.||..... +.+.+.
T Consensus 173 ~~-~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tl 251 (299)
T KOG1332|consen 173 AK-VKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTL 251 (299)
T ss_pred cc-cceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccc
Confidence 00 145899999999999999877655566789999999999999985 68999999999999975532 222333
Q ss_pred ecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCC
Q 007283 530 MLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKP 566 (609)
Q Consensus 530 ~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~ 566 (609)
+......++.+.||+.|..|+.++.|+.|.+|.-+..
T Consensus 252 l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 252 LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred cccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence 4445677999999999999999999999999986543
No 112
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.3e-24 Score=208.01 Aligned_cols=329 Identities=17% Similarity=0.243 Sum_probs=237.6
Q ss_pred EEEEeeCCCeEEEEecCCCeEEEEeCCCC------ceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--
Q 007283 150 SCAFKPSRPFRIATCGEDFLVNFYEGPPF------KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTAD-- 221 (609)
Q Consensus 150 ~~~~~p~~~~~i~t~~~d~~i~~~~~~~~------~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~-- 221 (609)
.+..++.+...+.|||+|+.|+.|+...- .+...+..|.+.|+.+....+|+.|+++|.|.+|++|+...+.
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 34444333335999999999999975432 2356678899999999999999999999999999999988774
Q ss_pred cccccCcCCCCccceEEEEE-CCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEE
Q 007283 222 KIGELSPEDGHKGSVYAVSW-SPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVS 300 (609)
Q Consensus 222 ~~~~~~~~~~h~~~V~~l~~-spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (609)
+..++ ..|..-|.+++. .++..++|+||-|+.|.+||++.... ++...+.
T Consensus 109 c~sti---r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~-~l~~s~n------------------------- 159 (735)
T KOG0308|consen 109 CMSTI---RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTA-TLVASFN------------------------- 159 (735)
T ss_pred hHhhh---hcccchheeeeecccCceeEEecCCCccEEEEEccCcch-hhhhhcc-------------------------
Confidence 34444 479999999999 88999999999999999999974211 0110000
Q ss_pred cCCcEEEEeCCCCCCCceee-eCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCc
Q 007283 301 LGGTISIFSANDLEKSPLQL-SGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEE 379 (609)
Q Consensus 301 ~~g~i~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (609)
+ .....+ .|+...|++++..+ .+..+++|+..+.+++|+..++...+.
T Consensus 160 ---~----------~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimk----------------- 208 (735)
T KOG0308|consen 160 ---N----------VTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMK----------------- 208 (735)
T ss_pred ---c----------cccccCCCCCccceeeeecCC-cceEEEecCcccceEEeccccccceee-----------------
Confidence 0 000112 27888999999864 346899999999999998654321110
Q ss_pred EEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCC
Q 007283 380 IVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDG 459 (609)
Q Consensus 380 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g 459 (609)
...|...|.++-+++||
T Consensus 209 ---------------------------------------------------------------LrGHTdNVr~ll~~dDG 225 (735)
T KOG0308|consen 209 ---------------------------------------------------------------LRGHTDNVRVLLVNDDG 225 (735)
T ss_pred ---------------------------------------------------------------eeccccceEEEEEcCCC
Confidence 00122347778889999
Q ss_pred CEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEE
Q 007283 460 SEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINC 539 (609)
Q Consensus 460 ~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~ 539 (609)
+.++++|.||+|++||+... .+..++..|+..|+++..+|+-.++-+|+.|+.|+.=|+.+..... .+....++|..
T Consensus 226 t~~ls~sSDgtIrlWdLgqQ--rCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~t-lick~daPv~~ 302 (735)
T KOG0308|consen 226 TRLLSASSDGTIRLWDLGQQ--RCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKST-LICKEDAPVLK 302 (735)
T ss_pred CeEeecCCCceEEeeecccc--ceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhhe-EeecCCCchhh
Confidence 99999999999999999644 4467789999999999999999999999999999998887753322 23335566777
Q ss_pred EEECCCCcEEEEEeCCCeEEEEEcCCCCCc----ce--------------------eEeccccCCeEEEEEc-CCCeEEE
Q 007283 540 LAWSPNNSMVATGSLDTCVIIYEIDKPASS----RM--------------------TIKGAHLGGVYGLAFT-DEHSVVS 594 (609)
Q Consensus 540 l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~----~~--------------------~~~~~h~~~v~~~~~s-~~~~l~s 594 (609)
+..+.+..-+-+++.|+.|+-|........ .+ .+.+|| .|.-.+.. |.++++|
T Consensus 303 l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~--ai~k~~mL~dkRhVlT 380 (735)
T KOG0308|consen 303 LHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGA--AIKKHAMLNDKRHVLT 380 (735)
T ss_pred hhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCch--hhhhhhhhcCcceEee
Confidence 777654444567889999999975421100 00 011111 23334444 7789999
Q ss_pred EeCCCcEEEEEc
Q 007283 595 SGEDACVRVWRL 606 (609)
Q Consensus 595 ~s~D~~i~~W~~ 606 (609)
=-.+|.+++||+
T Consensus 381 kDa~gnv~lwDI 392 (735)
T KOG0308|consen 381 KDAKGNVALWDI 392 (735)
T ss_pred ecCCCCEEEEEe
Confidence 999999999998
No 113
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.2e-23 Score=182.18 Aligned_cols=298 Identities=21% Similarity=0.272 Sum_probs=197.3
Q ss_pred eccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccc----cccCcCCCCccceEEEEECCCCCe-EEEEeCCCcE
Q 007283 183 SHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKI----GELSPEDGHKGSVYAVSWSPDGKQ-VLTASADKSA 257 (609)
Q Consensus 183 ~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~----~~~~~~~~h~~~V~~l~~spd~~~-l~s~s~d~~i 257 (609)
.++||...|++++|+.||+.|++++.|+.|++|+.+....- ...+..-+| -+.+.|+||-+- +++.-...++
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dh---pT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDH---PTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCC---ceEEEECCCcceEEEEEccCCEE
Confidence 47899999999999999999999999999999997653211 111112234 478999999764 4455556789
Q ss_pred EEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCC
Q 007283 258 KVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDP 337 (609)
Q Consensus 258 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 337 (609)
++|.+.....+........ |+ . ...-.-|.-.+..+-. ..+.
T Consensus 158 ~vyk~~K~~dG~~~~~~v~-------------------------------~D---~---~~f~~kh~v~~i~iGi-A~~~ 199 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVH-------------------------------ID---N---LEFERKHQVDIINIGI-AGNA 199 (420)
T ss_pred EEEEeeecccCCCCccccc-------------------------------cc---c---cccchhcccceEEEee-cCCc
Confidence 9997642211111100000 00 0 0001124444444333 2456
Q ss_pred CEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEee
Q 007283 338 KVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVA 417 (609)
Q Consensus 338 ~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (609)
.+|++++.|.+|.+|++.. +. .+ ++
T Consensus 200 k~imsas~dt~i~lw~lkG-q~--L~----------------------------------------~i------------ 224 (420)
T KOG2096|consen 200 KYIMSASLDTKICLWDLKG-QL--LQ----------------------------------------SI------------ 224 (420)
T ss_pred eEEEEecCCCcEEEEecCC-ce--ee----------------------------------------ee------------
Confidence 8999999999999997641 10 00 00
Q ss_pred ccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEec---CCeee---eeEEEecCC
Q 007283 418 LHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIR---GDTLT---EEAVLEKHR 491 (609)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~---~~~~~---~~~~~~~h~ 491 (609)
+.+ ...-...++||||+++|+++..-.+++|++- .+.+. ....+++|+
T Consensus 225 ------------------dtn--------q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~ 278 (420)
T KOG2096|consen 225 ------------------DTN--------QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ 278 (420)
T ss_pred ------------------ccc--------cccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch
Confidence 000 0112446889999999999999999999973 22221 124578999
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEccCCceE------Eeee--cCCC--CceEEEEECCCCcEEEEEeCCCeEEEE
Q 007283 492 GAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVK------LKNM--LYHT--ARINCLAWSPNNSMVATGSLDTCVIIY 561 (609)
Q Consensus 492 ~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~------~~~~--~~h~--~~i~~l~~s~d~~~l~s~s~D~~v~vw 561 (609)
..|...+|||+.+.+++.|.||+.++||..-++.. ++.. ..|. +.-..|+.||+|+.||.+ ...++++|
T Consensus 279 saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~ 357 (420)
T KOG2096|consen 279 SAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVF 357 (420)
T ss_pred hheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCceEEE
Confidence 99999999999999999999999999996432211 1111 1121 233489999999988755 45578999
Q ss_pred EcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEE
Q 007283 562 EIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWR 605 (609)
Q Consensus 562 ~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~ 605 (609)
...++. ........|...|.+++|+ ++++++|+| |+.+++..
T Consensus 358 ~se~g~-~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 358 ASEDGK-DYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred EcccCc-cchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 876643 3345567899999999999 788888887 55666543
No 114
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=7.6e-22 Score=175.52 Aligned_cols=284 Identities=18% Similarity=0.236 Sum_probs=217.3
Q ss_pred CcCceeEEeecCCCCeEEEe-CCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeC--CCcEEEEcCCCCce
Q 007283 15 ERGRGILISGHPKSNSILYT-NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADV--SGTVRIWGAHNDHV 91 (609)
Q Consensus 15 ~~~~~~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~--d~~i~vWd~~~~~~ 91 (609)
..++...+.++++|+.++.+ .+..+.|||..+++++..+..++..+..++|....+-+..++. |.+||.=++.+.+.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 47788899999999998775 5679999999999999999888899999999776665555544 89999999999886
Q ss_pred eeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEE
Q 007283 92 LKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVN 171 (609)
Q Consensus 92 ~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~ 171 (609)
+ +.|.+|...|..++.+|-+..+++.+-++ .+|+|+....++.+.+.-...+ .+||+|+|- ++|++.....|+
T Consensus 93 l-RYF~GH~~~V~sL~~sP~~d~FlS~S~D~---tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GL-ifA~~~~~~~Ik 165 (311)
T KOG1446|consen 93 L-RYFPGHKKRVNSLSVSPKDDTFLSSSLDK---TVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGL-IFALANGSELIK 165 (311)
T ss_pred E-EEcCCCCceEEEEEecCCCCeEEecccCC---eEEeeEecCCCCceEEecCCCc--ceeECCCCc-EEEEecCCCeEE
Confidence 5 46999999999999999989999887654 4788888777777766544443 479999997 477776666999
Q ss_pred EEeCCCC-----ceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCC
Q 007283 172 FYEGPPF-----KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGK 246 (609)
Q Consensus 172 ~~~~~~~-----~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~ 246 (609)
+||.+.. .......+.....+.+.|||||+.|+.++..+.+.+.|..+|..+.++.........-.+.+|+||++
T Consensus 166 LyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~ 245 (311)
T KOG1446|consen 166 LYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSK 245 (311)
T ss_pred EEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCc
Confidence 9986543 22111224556789999999999999999999999999999998777753322222226889999999
Q ss_pred eEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCC
Q 007283 247 QVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSAND 312 (609)
Q Consensus 247 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 312 (609)
++++|+.||+|.+|+++ .+.....+..... ....+.-|++.+...++.+..+..|-...
T Consensus 246 Fvl~gs~dg~i~vw~~~---tg~~v~~~~~~~~----~~~~~~~fnP~~~mf~sa~s~l~fw~p~~ 304 (311)
T KOG1446|consen 246 FVLSGSDDGTIHVWNLE---TGKKVAVLRGPNG----GPVSCVRFNPRYAMFVSASSNLVFWLPDE 304 (311)
T ss_pred EEEEecCCCcEEEEEcC---CCcEeeEecCCCC----CCccccccCCceeeeeecCceEEEEeccc
Confidence 99999999999999996 3444444432211 11122337788877888888888887653
No 115
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=1.7e-23 Score=180.30 Aligned_cols=235 Identities=20% Similarity=0.295 Sum_probs=188.9
Q ss_pred ccCcCceeEEeecCCCCeEEEeC-CCEEEEEeCCCCcccc--ccccCCCCcEEEEECC-CCCEEEEEeCCCcEEEEcCCC
Q 007283 13 STERGRGILISGHPKSNSILYTN-GRSVIILDLSNPLQVS--IYGEHAYPATVARFSP-NGEWIASADVSGTVRIWGAHN 88 (609)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~--~~~~h~~~v~~~~~sp-~g~~las~~~d~~i~vWd~~~ 88 (609)
..+-+..-.+++.-+|..|+... +..+.+|.+...+... .+.+|.+.|-.++++| +..++|+++.|++||+||...
T Consensus 17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~ 96 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS 96 (313)
T ss_pred hhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEecc
Confidence 33444445788999999999875 6899999997764432 3568999999999987 567899999999999999988
Q ss_pred CceeeEEEeecccceeEEEECCCCCEEEEEECCCC--------------------------------------cceEEEE
Q 007283 89 DHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKG--------------------------------------KSLVRAF 130 (609)
Q Consensus 89 ~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~--------------------------------------~~~~~~~ 130 (609)
++++... ..++.--.+.|+|||+++++.+.+.. ...+.+.
T Consensus 97 ~k~~~~i--~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~IL 174 (313)
T KOG1407|consen 97 GKCTARI--ETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEIL 174 (313)
T ss_pred CcEEEEe--eccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEE
Confidence 7754322 23344456799999999888763211 1112223
Q ss_pred EcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCC
Q 007283 131 MWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDK 210 (609)
Q Consensus 131 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~ 210 (609)
.|..=+++.+++.|...-.++.|+|+|.+ ||+|+.|-.+.+||....-+.+.+..+.-+|..+.|+.||++||+|+.|.
T Consensus 175 sypsLkpv~si~AH~snCicI~f~p~Gry-fA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh 253 (313)
T KOG1407|consen 175 SYPSLKPVQSIKAHPSNCICIEFDPDGRY-FATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDH 253 (313)
T ss_pred eccccccccccccCCcceEEEEECCCCce-EeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccc
Confidence 33333445567789999999999999986 99999999999999998888899999999999999999999999999999
Q ss_pred cEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCC
Q 007283 211 KGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASAD 254 (609)
Q Consensus 211 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d 254 (609)
.|-|=++++|..+..+ .+.++-..++|+|...+||-++.|
T Consensus 254 ~IDIA~vetGd~~~eI----~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 254 FIDIAEVETGDRVWEI----PCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eEEeEecccCCeEEEe----eccCCceeEEecCCCceeeEEecC
Confidence 9999999999998877 377889999999999999988876
No 116
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=6.5e-24 Score=181.16 Aligned_cols=253 Identities=23% Similarity=0.345 Sum_probs=190.8
Q ss_pred CCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEe
Q 007283 230 DGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFS 309 (609)
Q Consensus 230 ~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~ 309 (609)
..|...|..+...--|++|+|+|.|++|+|+.++....
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~------------------------------------------ 45 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ------------------------------------------ 45 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC------------------------------------------
Confidence 46888888888877899999999999999999863211
Q ss_pred CCCCCCCceeeeCCCCCeEEEEEe-cCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccce
Q 007283 310 ANDLEKSPLQLSGHMKNVTALTVL-NIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNK 388 (609)
Q Consensus 310 ~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 388 (609)
.....+|.||.++|..+++. +.-+.+|++|+.||.|.+|.-..+.-.+.
T Consensus 46 ----s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~-------------------------- 95 (299)
T KOG1332|consen 46 ----SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKA-------------------------- 95 (299)
T ss_pred ----ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhh--------------------------
Confidence 01224678999999999987 44568999999999999995432210000
Q ss_pred EEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCC--CCEEEEEe
Q 007283 389 IWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPD--GSEAIIGS 466 (609)
Q Consensus 389 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~--g~~l~~gs 466 (609)
. ....+...++++++.|. |-.||+++
T Consensus 96 ----------------~------------------------------------e~~~h~~SVNsV~wapheygl~Lacas 123 (299)
T KOG1332|consen 96 ----------------Y------------------------------------EHAAHSASVNSVAWAPHEYGLLLACAS 123 (299)
T ss_pred ----------------h------------------------------------hhhhhcccceeecccccccceEEEEee
Confidence 0 00012234677777775 45789999
Q ss_pred CCCcEEEEEecCC-eeeeeEEEecCCCceEEEEECCC---C-----------CEEEEEeCCCeEEEEEccCCceEEee-e
Q 007283 467 QDGKLRVYSIRGD-TLTEEAVLEKHRGAVSVIRYSPD---V-----------SMFASGDVNREAIVWDRVSREVKLKN-M 530 (609)
Q Consensus 467 ~dg~i~iw~~~~~-~~~~~~~~~~h~~~i~~v~~s~~---~-----------~~l~s~s~d~~v~iwd~~~~~~~~~~-~ 530 (609)
.||.|.+++.+.. ..........|.-.|++++|.|- | +.|+||+.|+.|+||+..+.+..+.. +
T Consensus 124 SDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l 203 (299)
T KOG1332|consen 124 SDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTL 203 (299)
T ss_pred CCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhh
Confidence 9999999998765 33334566789999999999987 5 56999999999999998775443332 6
Q ss_pred cCCCCceEEEEECCCC----cEEEEEeCCCeEEEEEcCCCCCc-ceeEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEE
Q 007283 531 LYHTARINCLAWSPNN----SMVATGSLDTCVIIYEIDKPASS-RMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVW 604 (609)
Q Consensus 531 ~~h~~~i~~l~~s~d~----~~l~s~s~D~~v~vw~~~~~~~~-~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W 604 (609)
..|.+.|+.++|.|.- .+||++|.||+|.||..+.+..+ ...++..-...+|.+.|| .++.|+-++.|..+.+|
T Consensus 204 ~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlw 283 (299)
T KOG1332|consen 204 EGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLW 283 (299)
T ss_pred hhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEE
Confidence 7899999999999974 57999999999999987643211 122333345679999999 78889889999999999
Q ss_pred Ec
Q 007283 605 RL 606 (609)
Q Consensus 605 ~~ 606 (609)
.=
T Consensus 284 ke 285 (299)
T KOG1332|consen 284 KE 285 (299)
T ss_pred Ee
Confidence 64
No 117
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.2e-22 Score=179.97 Aligned_cols=265 Identities=22% Similarity=0.311 Sum_probs=194.8
Q ss_pred eeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCC--eEEEEeCCCcEE
Q 007283 181 KLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGK--QVLTASADKSAK 258 (609)
Q Consensus 181 ~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~--~l~s~s~d~~i~ 258 (609)
.+.+..|...|++++. +|.++|+|+.|-+|.|||.++...+..+. .|.+.|+++.|.|... .|++|+.||.|.
T Consensus 36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll---~HagsitaL~F~~~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILL---SHAGSITALKFYPPLSKSHLLSGSDDGHII 110 (362)
T ss_pred cccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhccee---ccccceEEEEecCCcchhheeeecCCCcEE
Confidence 4557789999999998 67899999999999999999888777764 5899999999999875 899999999999
Q ss_pred EeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCC
Q 007283 259 VWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPK 338 (609)
Q Consensus 259 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 338 (609)
+|+... . .....+++|...|+.++.++. ++
T Consensus 111 iw~~~~-----W--------------------------------------------~~~~slK~H~~~Vt~lsiHPS-~K 140 (362)
T KOG0294|consen 111 IWRVGS-----W--------------------------------------------ELLKSLKAHKGQVTDLSIHPS-GK 140 (362)
T ss_pred EEEcCC-----e--------------------------------------------EEeeeecccccccceeEecCC-Cc
Confidence 999741 0 012346779999999999864 57
Q ss_pred EEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeec
Q 007283 339 VILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVAL 418 (609)
Q Consensus 339 ~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (609)
+.++-+.|+.++.|++..+.....
T Consensus 141 LALsVg~D~~lr~WNLV~Gr~a~v-------------------------------------------------------- 164 (362)
T KOG0294|consen 141 LALSVGGDQVLRTWNLVRGRVAFV-------------------------------------------------------- 164 (362)
T ss_pred eEEEEcCCceeeeehhhcCcccee--------------------------------------------------------
Confidence 999999999999998754321110
Q ss_pred cCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEE
Q 007283 419 HYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIR 498 (609)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~ 498 (609)
++.+..-+.+.|+|.|.+++.+..++ |-+|.+....+..... ....+.|+.
T Consensus 165 -------------------------~~L~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~---~~~r~l~~~ 215 (362)
T KOG0294|consen 165 -------------------------LNLKNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREIE---NPKRILCAT 215 (362)
T ss_pred -------------------------eccCCcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhhhh---ccccceeee
Confidence 00111123367889999998887755 7888876544322211 124466766
Q ss_pred ECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEE--CCCCcEEEEEeCCCeEEEEEcCCCCCcceeEecc
Q 007283 499 YSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAW--SPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGA 576 (609)
Q Consensus 499 ~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~--s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~ 576 (609)
|- ++..+++|..|+.+++||... ...+..+.+|..+|..+.+ .|++.+|+|+|.||.|+|||++.....+...+.-
T Consensus 216 ~l-~~~~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e 293 (362)
T KOG0294|consen 216 FL-DGSELLVGGDNEWISLKDTDS-DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAE 293 (362)
T ss_pred ec-CCceEEEecCCceEEEeccCC-CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEE
Confidence 63 677888999999999999765 3345567889999999984 4678999999999999999997432111111111
Q ss_pred c--cCCeEEEEEc
Q 007283 577 H--LGGVYGLAFT 587 (609)
Q Consensus 577 h--~~~v~~~~~s 587 (609)
| ..+++|++..
T Consensus 294 ~n~~~RltCl~~~ 306 (362)
T KOG0294|consen 294 LNTNVRLTCLRVK 306 (362)
T ss_pred eecCCccceeeeh
Confidence 1 3466777754
No 118
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=9.7e-23 Score=180.21 Aligned_cols=271 Identities=19% Similarity=0.310 Sum_probs=202.1
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCC
Q 007283 188 SNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNH 267 (609)
Q Consensus 188 ~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~ 267 (609)
...|+.+.|+|.++.|+.++.||.+++||+...+....+ .|..++.+++|.++ ..+++|+.||.|+.+|+...+.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~----~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF----KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe----ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc
Confidence 567999999999999999999999999998887554444 58899999999874 5688999999999999863210
Q ss_pred CceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCC
Q 007283 268 GKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDG 347 (609)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg 347 (609)
.++..|...|.++.+... ...+++||+|+
T Consensus 88 --------------------------------------------------~~igth~~~i~ci~~~~~-~~~vIsgsWD~ 116 (323)
T KOG1036|consen 88 --------------------------------------------------DQIGTHDEGIRCIEYSYE-VGCVISGSWDK 116 (323)
T ss_pred --------------------------------------------------eeeccCCCceEEEEeecc-CCeEEEcccCc
Confidence 123458888888887743 35899999999
Q ss_pred cEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEE
Q 007283 348 LIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVS 427 (609)
Q Consensus 348 ~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (609)
+|++||......... ......+.++...++.++.+..+.++..|+++....-+
T Consensus 117 ~ik~wD~R~~~~~~~-~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~-------------------------- 169 (323)
T KOG1036|consen 117 TIKFWDPRNKVVVGT-FDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPF-------------------------- 169 (323)
T ss_pred cEEEEeccccccccc-cccCceEEEEeccCCEEEEeecCceEEEEEcccccchh--------------------------
Confidence 999998764221111 01223566777778888888889898888876543110
Q ss_pred ecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCC--eeeeeEEEecCCC---------ceEE
Q 007283 428 TDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGD--TLTEEAVLEKHRG---------AVSV 496 (609)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~--~~~~~~~~~~h~~---------~i~~ 496 (609)
..+.-..+.++.++++.|++.-+|++|-||+|.+=.++.. ....+..++.|.. +|++
T Consensus 170 ------------q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNa 237 (323)
T KOG1036|consen 170 ------------QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNA 237 (323)
T ss_pred ------------hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEece
Confidence 0011122356889999999999999999999866444322 2223455666743 7999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeC
Q 007283 497 IRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSL 554 (609)
Q Consensus 497 v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~ 554 (609)
|+|+|-...||||+.||.|.+||..+++. ++++..-...|-.++|+.||..||.|+.
T Consensus 238 i~Fhp~~~tfaTgGsDG~V~~Wd~~~rKr-l~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 238 IAFHPIHGTFATGGSDGIVNIWDLFNRKR-LKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEeccccceEEecCCCceEEEccCcchhh-hhhccCCCCceEEEEeccCCCeEEEEec
Confidence 99999999999999999999999876543 4445444567999999999999999864
No 119
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=1.9e-23 Score=194.11 Aligned_cols=265 Identities=20% Similarity=0.330 Sum_probs=195.5
Q ss_pred CCccceEEEEECCCCC-eEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEe
Q 007283 231 GHKGSVYAVSWSPDGK-QVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFS 309 (609)
Q Consensus 231 ~h~~~V~~l~~spd~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~ 309 (609)
.|.+.|+.+..-|... .+++.+..+.+.|||....... ... .
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~-~~~------~------------------------------ 164 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSK-PKA------S------------------------------ 164 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCc-ccc------c------------------------------
Confidence 4889999999999776 4556677899999997531110 000 0
Q ss_pred CCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceE
Q 007283 310 ANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKI 389 (609)
Q Consensus 310 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 389 (609)
..-.+-..+.||.+.-.++.|+......+++++.|++|.+|+++..... ...+.
T Consensus 165 --~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~------~~~~~------------------ 218 (422)
T KOG0264|consen 165 --GECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKE------DKVVD------------------ 218 (422)
T ss_pred --ccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccC------Ccccc------------------
Confidence 0011224577888877888888777778999999999999987532110 00000
Q ss_pred EEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcC-CCCEEEEEeCC
Q 007283 390 WRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAP-DGSEAIIGSQD 468 (609)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~g~~l~~gs~d 468 (609)
. ....-.+...|..++++| +..++++.+.|
T Consensus 219 --------------------------------p-----------------~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd 249 (422)
T KOG0264|consen 219 --------------------------------P-----------------KTIFSGHEDVVEDVAWHPLHEDLFGSVGDD 249 (422)
T ss_pred --------------------------------c-----------------eEEeecCCcceehhhccccchhhheeecCC
Confidence 0 000001223466777777 45678999999
Q ss_pred CcEEEEEecCCeeeeeEEEecCCCceEEEEECCC-CCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCC-
Q 007283 469 GKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPD-VSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNN- 546 (609)
Q Consensus 469 g~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~-~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~- 546 (609)
+.+.|||++.+........++|.+.|+|++|+|- +..||+||.|++|.+||+++-..++-.+.+|...|.+|.|||..
T Consensus 250 ~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~e 329 (422)
T KOG0264|consen 250 GKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNE 329 (422)
T ss_pred CeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCC
Confidence 9999999986433334567899999999999986 56789999999999999988777666788999999999999975
Q ss_pred cEEEEEeCCCeEEEEEcCCCCC------------cceeEeccccCCeEEEEEcCC--CeEEEEeCCCcEEEEEcc
Q 007283 547 SMVATGSLDTCVIIYEIDKPAS------------SRMTIKGAHLGGVYGLAFTDE--HSVVSSGEDACVRVWRLT 607 (609)
Q Consensus 547 ~~l~s~s~D~~v~vw~~~~~~~------------~~~~~~~~h~~~v~~~~~s~~--~~l~s~s~D~~i~~W~~~ 607 (609)
..||+++.|+.+.|||+.+-+. +++.+.+||...|..+.|.+. -.|+|++.|+.+.||+..
T Consensus 330 tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 330 TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 6899999999999999864221 234678899999999999843 357899999999999874
No 120
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=5.9e-23 Score=181.78 Aligned_cols=246 Identities=17% Similarity=0.288 Sum_probs=187.9
Q ss_pred ccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEE
Q 007283 50 VSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRA 129 (609)
Q Consensus 50 ~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~ 129 (609)
...+..|.+.++++|.+ |.|+|||+.|-+|+|||......+
T Consensus 36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~ql------------------------------------- 76 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQL------------------------------------- 76 (362)
T ss_pred cccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhh-------------------------------------
Confidence 34567899999999985 899999999999999998764322
Q ss_pred EEcCCCCeeEEEecCCccEEEEEEeeCCC-eEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeC
Q 007283 130 FMWDSGTNVGEFDGHSRRVLSCAFKPSRP-FRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSS 208 (609)
Q Consensus 130 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~ 208 (609)
+.+-.|.+.|++|.|.|.-. .-+.+|+.||.|.+|+..++++...+++|..+|+.++.+|.|++-++.+.
T Consensus 77 ---------g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~ 147 (362)
T KOG0294|consen 77 ---------GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGG 147 (362)
T ss_pred ---------cceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcC
Confidence 12334566666666655432 13889999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEE
Q 007283 209 DKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVG 288 (609)
Q Consensus 209 d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (609)
|+.++.|+.-+++....++. .+. -+.+.|+|.|.+++.++.+ .|-+|.+.. -.+...+... ......
T Consensus 148 D~~lr~WNLV~Gr~a~v~~L--~~~--at~v~w~~~Gd~F~v~~~~-~i~i~q~d~---A~v~~~i~~~-----~r~l~~ 214 (362)
T KOG0294|consen 148 DQVLRTWNLVRGRVAFVLNL--KNK--ATLVSWSPQGDHFVVSGRN-KIDIYQLDN---ASVFREIENP-----KRILCA 214 (362)
T ss_pred CceeeeehhhcCccceeecc--CCc--ceeeEEcCCCCEEEEEecc-EEEEEeccc---HhHhhhhhcc-----ccceee
Confidence 99999999988886655532 233 3349999999999888765 688998753 1222222111 011122
Q ss_pred EEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEe-cCCCCEEEEEecCCcEEEEecCcc
Q 007283 289 CLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVL-NIDPKVILSSSYDGLIVKWIQGIG 357 (609)
Q Consensus 289 ~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~~t~s~dg~i~~W~~~~~ 357 (609)
..-++..++++..++.|.+|+.++ ..+...+.+|...|..+.+. ++...+++|+|.||.|++|+.+..
T Consensus 215 ~~l~~~~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 215 TFLDGSELLVGGDNEWISLKDTDS-DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eecCCceEEEecCCceEEEeccCC-CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 222466899999999999999876 45567789999999999855 555679999999999999987654
No 121
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=3.2e-23 Score=192.64 Aligned_cols=261 Identities=22% Similarity=0.352 Sum_probs=198.2
Q ss_pred cCCCCcEEEEECCCC-CEEEEEeCCCcEEEEcCCCCceee---------EEEeecccceeEEEECCCCC-EEEEEECCCC
Q 007283 55 EHAYPATVARFSPNG-EWIASADVSGTVRIWGAHNDHVLK---------KEFRVLSGRIDDLQWSPDGL-RIVACGDGKG 123 (609)
Q Consensus 55 ~h~~~v~~~~~sp~g-~~las~~~d~~i~vWd~~~~~~~~---------~~~~~~~~~v~~~~~spdg~-~l~~~~~~~~ 123 (609)
.|.+.|+.++.-|+. .+||+++..+.|.|||.....-.. ..+.+|.+.-..++|++... +|++.+++.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~- 200 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH- 200 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC-
Confidence 588899999988865 566788889999999987432111 25778888788899999643 666665543
Q ss_pred cceEEEEEcCCCC-------eeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCC--CCceeeeccCcccceEEE
Q 007283 124 KSLVRAFMWDSGT-------NVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGP--PFKFKLSHRGHSNFVNCV 194 (609)
Q Consensus 124 ~~~~~~~~~~~~~-------~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~--~~~~~~~~~~h~~~v~~l 194 (609)
.+++|+..... ....+.+|...|..++|+|.....|++++.|+.+.+||.+ +.+......+|.+.|+|+
T Consensus 201 --~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~ 278 (422)
T KOG0264|consen 201 --TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCV 278 (422)
T ss_pred --cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEE
Confidence 46666665321 2456889999999999999988899999999999999988 555666678899999999
Q ss_pred EEcCCCC-EEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCC-CeEEEEeCCCcEEEeecccCCCCceEE
Q 007283 195 RFSPDGS-KFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDG-KQVLTASADKSAKVWDISEDNHGKLKK 272 (609)
Q Consensus 195 ~~s~dg~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~-~~l~s~s~d~~i~iwd~~~~~~~~~~~ 272 (609)
+|+|-+. .|||||.|+++.+||.+.-+. .+....+|...|.++.|||.. ..|++++.|+.+.+||+..- + .
T Consensus 279 ~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~i--g---~ 351 (422)
T KOG0264|consen 279 AFNPFNEFILATGSADKTVALWDLRNLNK--PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRI--G---E 351 (422)
T ss_pred EeCCCCCceEEeccCCCcEEEeechhccc--CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccc--c---c
Confidence 9999755 789999999999999887553 333346899999999999975 57889999999999998621 1 0
Q ss_pred EeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEE
Q 007283 273 TLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKW 352 (609)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W 352 (609)
....... . +..........||+..|....+++..+..++|.+.|+.+.+|
T Consensus 352 eq~~eda---------------------~---------dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW 401 (422)
T KOG0264|consen 352 EQSPEDA---------------------E---------DGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIW 401 (422)
T ss_pred ccChhhh---------------------c---------cCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEe
Confidence 0000000 0 000111234568999999999998889999999999999999
Q ss_pred ecC
Q 007283 353 IQG 355 (609)
Q Consensus 353 ~~~ 355 (609)
...
T Consensus 402 ~~s 404 (422)
T KOG0264|consen 402 QMA 404 (422)
T ss_pred ecc
Confidence 653
No 122
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.1e-22 Score=186.40 Aligned_cols=292 Identities=20% Similarity=0.251 Sum_probs=205.4
Q ss_pred EEEEEcCCCCeeEEEecC-CccEEEE-EEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEE
Q 007283 127 VRAFMWDSGTNVGEFDGH-SRRVLSC-AFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFI 204 (609)
Q Consensus 127 ~~~~~~~~~~~~~~~~~h-~~~v~~~-~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 204 (609)
..+|+..++....++++- ...-.++ +..+ .+.+++--.-..+.+|...+.......---.++|.|++-+|+|.+|+
T Consensus 20 ~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~--~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ 97 (476)
T KOG0646|consen 20 CIVWDLRTGTSLLQYKGSYLAQAASLTALNN--EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLL 97 (476)
T ss_pred eeEEecCCCceeEEecCcccccchhhhhhch--hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEE
Confidence 456676777776666654 1111111 1112 23344334445688888654433322222346799999999999988
Q ss_pred EEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccc
Q 007283 205 SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDD 284 (609)
Q Consensus 205 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 284 (609)
.|+..+.+++|.+.+|..+..+ .+|-..|+++.|+-||.+|+|||.||.|.+|++.. +.
T Consensus 98 ag~i~g~lYlWelssG~LL~v~---~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~-----lv------------- 156 (476)
T KOG0646|consen 98 AGTISGNLYLWELSSGILLNVL---SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD-----LV------------- 156 (476)
T ss_pred eecccCcEEEEEeccccHHHHH---HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe-----ec-------------
Confidence 8889999999999999988777 37999999999999999999999999999998741 00
Q ss_pred eEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecC-CCCEEEEEecCCcEEEEecCccccceec
Q 007283 285 MLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNI-DPKVILSSSYDGLIVKWIQGIGYGGKLQ 363 (609)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~~~t~s~dg~i~~W~~~~~~~~~~~ 363 (609)
.+..+. ...+...+.+|.-.|+.+..... .+..++|+|.|.++++|++..+.
T Consensus 157 -------------~a~~~~---------~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~----- 209 (476)
T KOG0646|consen 157 -------------SADNDH---------SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV----- 209 (476)
T ss_pred -------------ccccCC---------CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce-----
Confidence 000010 11233456678888988877643 34589999999999999764320
Q ss_pred cccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEE
Q 007283 364 RKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVST 443 (609)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (609)
++..
T Consensus 210 ----------------------------------------------------------------------------LLlt 213 (476)
T KOG0646|consen 210 ----------------------------------------------------------------------------LLLT 213 (476)
T ss_pred ----------------------------------------------------------------------------eeEE
Confidence 1111
Q ss_pred eccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCe--------------eeeeEEEecCCC--ceEEEEECCCCCEEE
Q 007283 444 INLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDT--------------LTEEAVLEKHRG--AVSVIRYSPDVSMFA 507 (609)
Q Consensus 444 ~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~--------------~~~~~~~~~h~~--~i~~v~~s~~~~~l~ 507 (609)
+....++.++++.|-++.+.+|+.+|.|.+.++..-. ......+.+|.+ .|+|+++|-||.+|+
T Consensus 214 i~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl 293 (476)
T KOG0646|consen 214 ITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL 293 (476)
T ss_pred EecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence 1222457889999999999999999999998874321 123456788988 999999999999999
Q ss_pred EEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCC
Q 007283 508 SGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545 (609)
Q Consensus 508 s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d 545 (609)
+|+.||.+.+||+.+.+. ++.+..-.++|+-+.+.|-
T Consensus 294 SGd~dg~VcvWdi~S~Q~-iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 294 SGDEDGKVCVWDIYSKQC-IRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred eeCCCCCEEEEecchHHH-HHHHhhhccccceeEeecc
Confidence 999999999999876543 3333334567888888553
No 123
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=7.4e-22 Score=173.88 Aligned_cols=279 Identities=17% Similarity=0.203 Sum_probs=193.7
Q ss_pred cCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCC-Ccee-eeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 007283 143 GHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP-FKFK-LSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTA 220 (609)
Q Consensus 143 ~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~-~~~~-~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~ 220 (609)
...+.|.+++|+|.....++.++.|+++++|+... +... .....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 34567999999997666788999999999999765 2222 335678999999999999999999999999999999998
Q ss_pred ccccccCcCCCCccceEEEEECCCCC--eEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEE
Q 007283 221 DKIGELSPEDGHKGSVYAVSWSPDGK--QVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVI 298 (609)
Q Consensus 221 ~~~~~~~~~~~h~~~V~~l~~spd~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (609)
+.. ++ ..|.++|..+.|-+-.. .|++||.|.+|++||++. ...+.++...+ .+.+..-...++++
T Consensus 105 Q~~-~v---~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~---~~pv~t~~LPe------RvYa~Dv~~pm~vV 171 (347)
T KOG0647|consen 105 QVS-QV---AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS---SNPVATLQLPE------RVYAADVLYPMAVV 171 (347)
T ss_pred Cee-ee---eecccceeEEEEecCCCcceeEecccccceeecccCC---CCeeeeeeccc------eeeehhccCceeEE
Confidence 543 22 36999999999987654 799999999999999873 23333332221 22222233568888
Q ss_pred EEcCCcEEEEeCCCCCCCceeeeCCC----CCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEee
Q 007283 299 VSLGGTISIFSANDLEKSPLQLSGHM----KNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFA 374 (609)
Q Consensus 299 ~~~~g~i~~~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~ 374 (609)
+..+..|.+|++.... .+++.+. -.+.+++.+... ...+-|+-.|.+-+-..+.... .
T Consensus 172 ata~r~i~vynL~n~~---te~k~~~SpLk~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~~----------~---- 233 (347)
T KOG0647|consen 172 ATAERHIAVYNLENPP---TEFKRIESPLKWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPNP----------K---- 233 (347)
T ss_pred EecCCcEEEEEcCCCc---chhhhhcCcccceeeEEEEEecC-CceEeeeecceEEEEecCCCCc----------c----
Confidence 9999999999985322 2222222 245666665332 3447777777776654432110 0
Q ss_pred eeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEE
Q 007283 375 AIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASA 454 (609)
Q Consensus 375 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (609)
..+.+.-|+.. .. ... .-+.|+.++
T Consensus 234 -------------------------------------~nFtFkCHR~~-------~~-----~~~------~VYaVNsi~ 258 (347)
T KOG0647|consen 234 -------------------------------------DNFTFKCHRST-------NS-----VND------DVYAVNSIA 258 (347)
T ss_pred -------------------------------------CceeEEEeccC-------CC-----CCC------ceEEecceE
Confidence 00000000000 00 000 013478899
Q ss_pred EcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEE
Q 007283 455 IAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASG 509 (609)
Q Consensus 455 ~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~ 509 (609)
|+|....|++.+.||++-+||-+.... .+..+.|..+|+|.+|+.+|.++|-+
T Consensus 259 FhP~hgtlvTaGsDGtf~FWDkdar~k--Lk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 259 FHPVHGTLVTAGSDGTFSFWDKDARTK--LKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred eecccceEEEecCCceEEEecchhhhh--hhccCcCCCccceeEecCCCCEEEEE
Confidence 999999999999999999999765432 35567899999999999999999876
No 124
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=2.2e-22 Score=192.47 Aligned_cols=312 Identities=23% Similarity=0.378 Sum_probs=218.0
Q ss_pred ccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCE-EEEEECCCCcceEEEE
Q 007283 52 IYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLR-IVACGDGKGKSLVRAF 130 (609)
Q Consensus 52 ~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~-l~~~~~~~~~~~~~~~ 130 (609)
.|.||++-|.++...|.|.+||+|+.||+||||.+.+++++.+ + ...+.|.+++|+|.+.. ++++.-+.. +.
T Consensus 395 vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~-~-~~d~~I~~vaw~P~~~~~vLAvA~~~~-----~~ 467 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRT-V-QFDSEIRSVAWNPLSDLCVLAVAVGEC-----VL 467 (733)
T ss_pred eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEE-E-eecceeEEEEecCCCCceeEEEEecCc-----eE
Confidence 4789999999999999999999999999999999999886653 2 34568999999998652 333322221 12
Q ss_pred EcCC--CCeeEEEecCCccEEEEEEeeCCCeEEEEe----cCCCeEEEEeCCC----CceeeeccCcccceEEEEEcCCC
Q 007283 131 MWDS--GTNVGEFDGHSRRVLSCAFKPSRPFRIATC----GEDFLVNFYEGPP----FKFKLSHRGHSNFVNCVRFSPDG 200 (609)
Q Consensus 131 ~~~~--~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~----~~d~~i~~~~~~~----~~~~~~~~~h~~~v~~l~~s~dg 200 (609)
..+. +..+.. + +... .|+++ ..+..+..|.... .+.+...-.|...|..+.|+..|
T Consensus 468 ivnp~~G~~~e~--~-----------~t~e-ll~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG 533 (733)
T KOG0650|consen 468 IVNPIFGDRLEV--G-----------PTKE-LLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG 533 (733)
T ss_pred EeCccccchhhh--c-----------chhh-hhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC
Confidence 2221 110000 0 0111 12222 1233455664321 11123334578889999999999
Q ss_pred CEEEEEeCC---CcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccC
Q 007283 201 SKFISVSSD---KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPS 277 (609)
Q Consensus 201 ~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~ 277 (609)
.+|++...+ ..|.|+++........+ .-..+.|.++.|+|...+|+.++ ...||+||+.. +.+.+
T Consensus 534 DYlatV~~~~~~~~VliHQLSK~~sQ~PF---~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~k---qelvK----- 601 (733)
T KOG0650|consen 534 DYLATVMPDSGNKSVLIHQLSKRKSQSPF---RKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSK---QELVK----- 601 (733)
T ss_pred ceEEEeccCCCcceEEEEecccccccCch---hhcCCceeEEEecCCCceEEEEe-ccceEEEehhH---HHHHH-----
Confidence 999998764 56888887665544333 23457899999999999988886 46899999751 10000
Q ss_pred CCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCcc
Q 007283 278 GSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIG 357 (609)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~ 357 (609)
.+.+++
T Consensus 602 -------------------------------------------------------------kL~tg~------------- 607 (733)
T KOG0650|consen 602 -------------------------------------------------------------KLLTGS------------- 607 (733)
T ss_pred -------------------------------------------------------------HHhcCC-------------
Confidence 000000
Q ss_pred ccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeC
Q 007283 358 YGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRG 437 (609)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (609)
T Consensus 608 -------------------------------------------------------------------------------- 607 (733)
T KOG0650|consen 608 -------------------------------------------------------------------------------- 607 (733)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEE
Q 007283 438 AEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIV 517 (609)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~i 517 (609)
..+..++++|.|..++.|+.|+.+-.||++-... ..+.+.-|...+++|+|++...+++||+.|+++.+
T Consensus 608 ----------kwiS~msihp~GDnli~gs~d~k~~WfDldlssk-Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~V 676 (733)
T KOG0650|consen 608 ----------KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSK-PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIV 676 (733)
T ss_pred ----------eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcc-hhHHhhhhhhhhhhhhhccccceeeeecCCCcEEE
Confidence 1255678899999999999999999999864422 24567789999999999999999999999999998
Q ss_pred EE------c-cCC-ceEEeeecCCCCc----eEEEEECCCCcEEEEEeCCCeEEEE
Q 007283 518 WD------R-VSR-EVKLKNMLYHTAR----INCLAWSPNNSMVATGSLDTCVIIY 561 (609)
Q Consensus 518 wd------~-~~~-~~~~~~~~~h~~~----i~~l~~s~d~~~l~s~s~D~~v~vw 561 (609)
+- + ++. -..++.+.+|... |..+.|+|..-||++++.||+|++|
T Consensus 677 fhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 677 FHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred EeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 74 1 111 2245667777655 9999999999999999999999998
No 125
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.6e-21 Score=181.31 Aligned_cols=286 Identities=19% Similarity=0.283 Sum_probs=206.7
Q ss_pred CCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCe
Q 007283 58 YPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTN 137 (609)
Q Consensus 58 ~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~ 137 (609)
++|+++.|+|.-.+|++++.|+++||+.++.+.-. .+..
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~---------~lqS-------------------------------- 252 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP---------KLQS-------------------------------- 252 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccCh---------hhee--------------------------------
Confidence 57999999999999999999999999988653200 0111
Q ss_pred eEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeee--ccCcc-cceEEEEEcCCCCEEEEEeCCCcEEE
Q 007283 138 VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLS--HRGHS-NFVNCVRFSPDGSKFISVSSDKKGII 214 (609)
Q Consensus 138 ~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~--~~~h~-~~v~~l~~s~dg~~l~s~~~d~~i~i 214 (609)
+.-...+|.++.|+|+|..+++++|.-..+..||.++.+.... ..|+. ..+.....+|++++|+.++..|.|.+
T Consensus 253 ---~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~l 329 (514)
T KOG2055|consen 253 ---IHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHL 329 (514)
T ss_pred ---eeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEe
Confidence 1111235677788888876788888888888999877665432 34544 45677889999999999999999999
Q ss_pred EeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCC
Q 007283 215 YDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQND 294 (609)
Q Consensus 215 wd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (609)
....+++.+..++ -.+.|..++|+.|++.|+.++.+|.|.+||++. .....
T Consensus 330 LhakT~eli~s~K----ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~---~~~~~---------------------- 380 (514)
T KOG2055|consen 330 LHAKTKELITSFK----IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQ---NSCLH---------------------- 380 (514)
T ss_pred ehhhhhhhhheee----eccEEeeEEEecCCcEEEEEcCCceEEEEecCC---cceEE----------------------
Confidence 9999999988875 467899999999999999999999999999862 11100
Q ss_pred eEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEee
Q 007283 295 FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFA 374 (609)
Q Consensus 295 ~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~ 374 (609)
.|. + ||.|
T Consensus 381 ------------rf~------------------------D-----------~G~v------------------------- 388 (514)
T KOG2055|consen 381 ------------RFV------------------------D-----------DGSV------------------------- 388 (514)
T ss_pred ------------EEe------------------------e-----------cCcc-------------------------
Confidence 000 0 0000
Q ss_pred eeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEE
Q 007283 375 AIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASA 454 (609)
Q Consensus 375 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (609)
.-+.++
T Consensus 389 --------------------------------------------------------------------------~gts~~ 394 (514)
T KOG2055|consen 389 --------------------------------------------------------------------------HGTSLC 394 (514)
T ss_pred --------------------------------------------------------------------------ceeeee
Confidence 012345
Q ss_pred EcCCCCEEEEEeCCCcEEEEEecCC----eeeeeEEEecCCCceEEEEECCCCCEEEEEeC--CCeEEEEEccCCceEEe
Q 007283 455 IAPDGSEAIIGSQDGKLRVYSIRGD----TLTEEAVLEKHRGAVSVIRYSPDVSMFASGDV--NREAIVWDRVSREVKLK 528 (609)
Q Consensus 455 ~sp~g~~l~~gs~dg~i~iw~~~~~----~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~--d~~v~iwd~~~~~~~~~ 528 (609)
.+++|.++|+||+.|.|.|||.++. ...+...+..-...|+++.|+||.++||.+|. +..+|+=.+-+-.. ..
T Consensus 395 ~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TV-Fs 473 (514)
T KOG2055|consen 395 ISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTV-FS 473 (514)
T ss_pred ecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceee-ec
Confidence 6788899999999999999985432 12223344555678999999999999998874 44566544322111 11
Q ss_pred ee---cCCCCceEEEEECCCCcEEEEEeCCCeEEEEEc
Q 007283 529 NM---LYHTARINCLAWSPNNSMVATGSLDTCVIIYEI 563 (609)
Q Consensus 529 ~~---~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~ 563 (609)
.+ ...-+.|+|++|||.+-+||.|..+|.|.+|.+
T Consensus 474 NfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 474 NFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred cCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 11 123356999999999999999999999999976
No 126
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.1e-22 Score=198.38 Aligned_cols=285 Identities=21% Similarity=0.320 Sum_probs=201.6
Q ss_pred ceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEc---CCeEEEEEcCCcEEEEeCC
Q 007283 235 SVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQ---NDFLVIVSLGGTISIFSAN 311 (609)
Q Consensus 235 ~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~i~~~~~~ 311 (609)
....+...++-..++.++. ..++++.+...... ..-.+...........+....|. .+++++++..|.|.+|+++
T Consensus 41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~-~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFS-EKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred ccceEeecCCcceeEEecc-cceeeEeeCcccCC-cceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 3556677788777777764 46788876532111 11111111110000011112343 4578999999999999987
Q ss_pred CC--CCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceE
Q 007283 312 DL--EKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKI 389 (609)
Q Consensus 312 ~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 389 (609)
.. +.....+..|+..+..++|+...+.++++||.||+|+.||+.........
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~-------------------------- 172 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF-------------------------- 172 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccc--------------------------
Confidence 53 22233578899999999999888999999999999999987432100000
Q ss_pred EEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcC-CCCEEEEEeCC
Q 007283 390 WRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAP-DGSEAIIGSQD 468 (609)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~g~~l~~gs~d 468 (609)
++ ....+..+.|+| .+..++++...
T Consensus 173 ----------------------------------------------~~--------nSESiRDV~fsp~~~~~F~s~~ds 198 (839)
T KOG0269|consen 173 ----------------------------------------------RS--------NSESIRDVKFSPGYGNKFASIHDS 198 (839)
T ss_pred ----------------------------------------------cc--------cchhhhceeeccCCCceEEEecCC
Confidence 00 012356667777 56789999999
Q ss_pred CcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCc-
Q 007283 469 GKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNS- 547 (609)
Q Consensus 469 g~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~- 547 (609)
|.|++||++.... ....+.+|.++|.|+.|+|++.+||+|+.|+.++|||..+.+...........+|.+|+|-|+.+
T Consensus 199 G~lqlWDlRqp~r-~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 199 GYLQLWDLRQPDR-CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSY 277 (839)
T ss_pred ceEEEeeccCchh-HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccc
Confidence 9999999975432 34567899999999999999999999999999999998765544333344567899999999865
Q ss_pred EEEEEe--CCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc--CCCeEEEEeCCCcEEE
Q 007283 548 MVATGS--LDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT--DEHSVVSSGEDACVRV 603 (609)
Q Consensus 548 ~l~s~s--~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s--~~~~l~s~s~D~~i~~ 603 (609)
+||+.+ .|-.|.|||+.++.-. ..+...|...++.++|. |...+.|+|.|+++..
T Consensus 278 hLAtcsmv~dtsV~VWDvrRPYIP-~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRRPYIP-YATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred hhhhhhccccceEEEEeecccccc-ceeeeccCccccceeccCCCceeeEeecCccHHHH
Confidence 577665 6789999999876533 34456799999999996 5678899999998754
No 127
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=4.3e-19 Score=178.37 Aligned_cols=457 Identities=18% Similarity=0.235 Sum_probs=264.1
Q ss_pred EEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCC---EEEEEeCCCcEEEEcCCCCceeeEEEe
Q 007283 21 LISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGE---WIASADVSGTVRIWGAHNDHVLKKEFR 97 (609)
Q Consensus 21 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~---~las~~~d~~i~vWd~~~~~~~~~~~~ 97 (609)
...+++|+..++.+-++.|.||+..++.....+.+|..++..+.+.|... ++.+.+.||+|++||...+..+ +.+.
T Consensus 21 ~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Ll-kt~~ 99 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELL-KTFD 99 (792)
T ss_pred ccccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEE-EEEe
Confidence 55689999999999999999999999999999999999999999988654 6678999999999999876543 3332
Q ss_pred ecccceeEEEECC----CCCEEEEEECCCCcceEEEEEcCCCCe-----eEEE--------ecCCccEEEEEEeeCCCeE
Q 007283 98 VLSGRIDDLQWSP----DGLRIVACGDGKGKSLVRAFMWDSGTN-----VGEF--------DGHSRRVLSCAFKPSRPFR 160 (609)
Q Consensus 98 ~~~~~v~~~~~sp----dg~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~--------~~h~~~v~~~~~~p~~~~~ 160 (609)
...++-++.+.| +. ..+..+... ........-+.... +.++ ++|.. -..+.+.+.+.+
T Consensus 100 -~~~~v~~~~~~~~~a~~s-~~~~~s~~~-~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~- 174 (792)
T KOG1963|consen 100 -NNLPVHALVYKPAQADIS-ANVYVSVED-YSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEF- 174 (792)
T ss_pred -cCCceeEEEechhHhCcc-ceeEeeccc-ceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceE-
Confidence 223344444433 22 122111111 00110000111111 1111 12222 234555666653
Q ss_pred EEEecCCCeEEEEeCCCCceee----eccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CccccccCcCCCCccc
Q 007283 161 IATCGEDFLVNFYEGPPFKFKL----SHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKT-ADKIGELSPEDGHKGS 235 (609)
Q Consensus 161 i~t~~~d~~i~~~~~~~~~~~~----~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~h~~~ 235 (609)
..--.+..+.+|..+...... ....|.-.++|.++||.++.+|+|..||.|.+|.-.. ...-.+.....=|...
T Consensus 175 -~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~ 253 (792)
T KOG1963|consen 175 -KGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDE 253 (792)
T ss_pred -EEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccc
Confidence 222234446677665533111 1235777799999999999999999999999996333 1111111111126679
Q ss_pred eEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEE--cCCeEEEEEcCCcEEEEeCCCC
Q 007283 236 VYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW--QNDFLVIVSLGGTISIFSANDL 313 (609)
Q Consensus 236 V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~i~~~~~~~~ 313 (609)
|++++|+++|.+|++||..+-+-.|.+..+. +.+.+.-.+ .+..+.+ ++++..+...|+.|.+....+.
T Consensus 254 V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-----kqfLPRLgs----~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl 324 (792)
T KOG1963|consen 254 VNSLSFSSDGAYLLSGGREGVLVLWQLETGK-----KQFLPRLGS----PILHIVVSPDSDLYSLVLEDNQIHLIKASDL 324 (792)
T ss_pred cceeEEecCCceEeecccceEEEEEeecCCC-----cccccccCC----eeEEEEEcCCCCeEEEEecCceEEEEeccch
Confidence 9999999999999999999999999986432 333333222 2333333 4557777788999888876443
Q ss_pred CCCceeeeC-----------CCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEE
Q 007283 314 EKSPLQLSG-----------HMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVT 382 (609)
Q Consensus 314 ~~~~~~~~~-----------h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (609)
..... .+| -.+-.+.+.+. +..+.++-.++.|.|..+++-+.. .+..+...+.
T Consensus 325 ~~k~t-Isgi~~~~~~~k~~~~~l~t~~~id-pr~~~~vln~~~g~vQ~ydl~td~----------~i~~~~v~~~---- 388 (792)
T KOG1963|consen 325 EIKST-ISGIKPPTPSTKTRPQSLTTGVSID-PRTNSLVLNGHPGHVQFYDLYTDS----------TIYKLQVCDE---- 388 (792)
T ss_pred hhhhh-ccCccCCCccccccccccceeEEEc-CCCCceeecCCCceEEEEeccccc----------eeeeEEEEee----
Confidence 21110 000 11112223332 223455566666666666542210 0100000000
Q ss_pred EeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEE
Q 007283 383 SGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEA 462 (609)
Q Consensus 383 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l 462 (609)
+ ...++ + +..-.+++++.+-+|.++
T Consensus 389 --------------------n--------------~~~~~--------~-------------n~~v~itav~~~~~gs~m 413 (792)
T KOG1963|consen 389 --------------------N--------------YSDGD--------V-------------NIQVGITAVARSRFGSWM 413 (792)
T ss_pred --------------------c--------------ccCCc--------c-------------eeEEeeeeehhhccceEE
Confidence 0 00000 0 000113333333444444
Q ss_pred EEE--------eCC--CcEEEEEecCCee---eeeEEEecCCCceEEEEEC-CCCC-EEEEEeCCCeEEEEEccCCceE-
Q 007283 463 IIG--------SQD--GKLRVYSIRGDTL---TEEAVLEKHRGAVSVIRYS-PDVS-MFASGDVNREAIVWDRVSREVK- 526 (609)
Q Consensus 463 ~~g--------s~d--g~i~iw~~~~~~~---~~~~~~~~h~~~i~~v~~s-~~~~-~l~s~s~d~~v~iwd~~~~~~~- 526 (609)
++. ..| -.+++|-...... ....+...|...+.+..|. |-.. .+++++.|+.+++|-+...+..
T Consensus 414 aT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~ 493 (792)
T KOG1963|consen 414 ATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIY 493 (792)
T ss_pred EEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccC
Confidence 432 223 3578897654431 1233456788776665553 3333 8999999999999987432211
Q ss_pred --------EeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCC
Q 007283 527 --------LKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDK 565 (609)
Q Consensus 527 --------~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~ 565 (609)
...-..|..++++++||.||..| +.+.|++|.+||..+
T Consensus 494 k~~s~W~c~~i~sy~k~~i~a~~fs~dGsll-a~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 494 KKSSNWTCKAIGSYHKTPITALCFSQDGSLL-AVSFDDTITIWDYDT 539 (792)
T ss_pred cCccceEEeeeeccccCcccchhhcCCCcEE-EEecCCEEEEecCCC
Confidence 11123578899999999999765 567889999999876
No 128
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=1.9e-21 Score=187.62 Aligned_cols=321 Identities=20% Similarity=0.256 Sum_probs=209.6
Q ss_pred EEEe--eCCCeEEEEecCCCeEEEEeCCCCcee------eeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc
Q 007283 151 CAFK--PSRPFRIATCGEDFLVNFYEGPPFKFK------LSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK 222 (609)
Q Consensus 151 ~~~~--p~~~~~i~t~~~d~~i~~~~~~~~~~~------~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~ 222 (609)
+.|+ |....+|+.+..|+.|.++|....... ..+..|.+.|..+.|.|....|++++.|.+++.||+++..+
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 4553 455678999999999999987654433 34567999999999999666899999999999999999887
Q ss_pred ccccCcCCCCccceEEEEECCCCC-eEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEc
Q 007283 223 IGELSPEDGHKGSVYAVSWSPDGK-QVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSL 301 (609)
Q Consensus 223 ~~~~~~~~~h~~~V~~l~~spd~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (609)
...- ...||.+.|.+++|.|+.. .|++|+.||.|.|||++... ......+.. . +.+..
T Consensus 135 ~G~~-~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~-~d~~e~~~~--------~-----------~~~~~ 193 (720)
T KOG0321|consen 135 VGGR-LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNG-VDALEEFDN--------R-----------IYGRH 193 (720)
T ss_pred ecce-eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccc-hhhHHHHhh--------h-----------hhccc
Confidence 7652 2359999999999999765 78999999999999987421 000000000 0 00000
Q ss_pred CCcEEEEeCCCCCCCceeeeCCCCCe----EEEEEecCCCCEEEEEec-CCcEEEEecCccccceeccccccceeEeeee
Q 007283 302 GGTISIFSANDLEKSPLQLSGHMKNV----TALTVLNIDPKVILSSSY-DGLIVKWIQGIGYGGKLQRKENSQIKCFAAI 376 (609)
Q Consensus 302 ~g~i~~~~~~~~~~~~~~~~~h~~~v----~~~~~~~~~~~~~~t~s~-dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~ 376 (609)
.+. - --..........-..|...+ +.+.|- +...+++++. |+.|++||+...+....+. ++.
T Consensus 194 n~~-p-tpskp~~kr~~k~kA~s~ti~ssvTvv~fk--De~tlaSaga~D~~iKVWDLRk~~~~~r~e----p~~----- 260 (720)
T KOG0321|consen 194 NTA-P-TPSKPLKKRIRKWKAASNTIFSSVTVVLFK--DESTLASAGAADSTIKVWDLRKNYTAYRQE----PRG----- 260 (720)
T ss_pred cCC-C-CCCchhhccccccccccCceeeeeEEEEEe--ccceeeeccCCCcceEEEeecccccccccC----CCc-----
Confidence 000 0 00000000011112233333 334443 4468888887 9999999876432111100 000
Q ss_pred CCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEc
Q 007283 377 EEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIA 456 (609)
Q Consensus 377 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 456 (609)
...+..+. .-...+.++...
T Consensus 261 ------------------------------------~~~~~t~s------------------------krs~G~~nL~lD 280 (720)
T KOG0321|consen 261 ------------------------------------SDKYPTHS------------------------KRSVGQVNLILD 280 (720)
T ss_pred ------------------------------------ccCccCcc------------------------cceeeeEEEEec
Confidence 00000000 000124566666
Q ss_pred CCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCce--EEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCC
Q 007283 457 PDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAV--SVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHT 534 (609)
Q Consensus 457 p~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i--~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~ 534 (609)
..|.++.+.+.|+.|++|++.+........+.+|...- ..-..|||+.++++|+.|...++|.+...+.....+.+|.
T Consensus 281 ssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght 360 (720)
T KOG0321|consen 281 SSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHT 360 (720)
T ss_pred CCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcc
Confidence 77888777777999999999876654444444443211 1224689999999999999999999888777666788999
Q ss_pred CceEEEEECCCC-cEEEEEeCCCeEEEEEcCC
Q 007283 535 ARINCLAWSPNN-SMVATGSLDTCVIIYEIDK 565 (609)
Q Consensus 535 ~~i~~l~~s~d~-~~l~s~s~D~~v~vw~~~~ 565 (609)
..|++++|.|.. .-++|++.|-.+++|++..
T Consensus 361 ~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 361 REVTTVRWLPSATTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred eEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence 999999998753 3467779999999999854
No 129
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.1e-21 Score=193.44 Aligned_cols=282 Identities=20% Similarity=0.308 Sum_probs=208.7
Q ss_pred CCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCc-eeeEEEe--ecc---cceeEEEECC-CCCEEEEEECCCCcceEEEE
Q 007283 58 YPATVARFSPNGEWIASADVSGTVRIWGAHNDH-VLKKEFR--VLS---GRIDDLQWSP-DGLRIVACGDGKGKSLVRAF 130 (609)
Q Consensus 58 ~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~-~~~~~~~--~~~---~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~~ 130 (609)
...+++...++-..|+.++. -..+|+.+.... .+...++ .-. -.+..+.|+. +.+.|+++..+. .+.+|
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG---~i~vW 115 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNG---VISVW 115 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCC---cEEEE
Confidence 34667777888888877754 367788776432 1111122 111 1346678886 345666655332 46667
Q ss_pred EcCC---CCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCC-CCEEEEE
Q 007283 131 MWDS---GTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPD-GSKFISV 206 (609)
Q Consensus 131 ~~~~---~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~d-g~~l~s~ 206 (609)
+... ++.+..|+.|.+.+.+++|++..+.++++|++|++|++||.+..+-...+++....|..|.|+|. +..|+++
T Consensus 116 dlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~ 195 (839)
T KOG0269|consen 116 DLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASI 195 (839)
T ss_pred ecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEe
Confidence 7665 55667899999999999999999999999999999999999988888889999999999999986 6789999
Q ss_pred eCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceE
Q 007283 207 SSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDML 286 (609)
Q Consensus 207 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (609)
.+.|.+++||++..+.-... ..+|.+.|.++.|+|++.+|||||.|++|+|||+..... +.+.++.- ...+
T Consensus 196 ~dsG~lqlWDlRqp~r~~~k--~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~-~~~~tInT------iapv 266 (839)
T KOG0269|consen 196 HDSGYLQLWDLRQPDRCEKK--LTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA-KPKHTINT------IAPV 266 (839)
T ss_pred cCCceEEEeeccCchhHHHH--hhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-cceeEEee------ccee
Confidence 99999999999876643322 358999999999999999999999999999999874322 22222211 0122
Q ss_pred EEEEEcCC---eEEEEE--cCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEE
Q 007283 287 VGCLWQND---FLVIVS--LGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKW 352 (609)
Q Consensus 287 ~~~~~~~~---~~~~~~--~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W 352 (609)
-...|.+. .|++.+ .+-.|++|++.-.--+..++..|...++.++|-..+...+.+++.|+++..-
T Consensus 267 ~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh 337 (839)
T KOG0269|consen 267 GRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQH 337 (839)
T ss_pred eeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHh
Confidence 33445543 344433 3567999998766666678899999999999987667889999999998654
No 130
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.89 E-value=4e-20 Score=179.12 Aligned_cols=268 Identities=15% Similarity=0.231 Sum_probs=191.4
Q ss_pred eEEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeec
Q 007283 20 ILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVL 99 (609)
Q Consensus 20 ~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~ 99 (609)
..+.+.|||..|+-..|+++++||.+++.++..+.+|++.|+|++++.||+++|||++|+.|.||...-...++. .|
T Consensus 16 ~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkY---SH 92 (1081)
T KOG1538|consen 16 NDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKY---SH 92 (1081)
T ss_pred heeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeee---cc
Confidence 479999999999999999999999999999999999999999999999999999999999999998654444432 57
Q ss_pred ccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeC--CC
Q 007283 100 SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEG--PP 177 (609)
Q Consensus 100 ~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~--~~ 177 (609)
...|.++.|.|-...|++|+-.. .-.|......-.-.....++.+|+|..||.+ ++-|-.+|+|.+-+. ++
T Consensus 93 ~D~IQCMsFNP~~h~LasCsLsd------FglWS~~qK~V~K~kss~R~~~CsWtnDGqy-lalG~~nGTIsiRNk~gEe 165 (1081)
T KOG1538|consen 93 NDAIQCMSFNPITHQLASCSLSD------FGLWSPEQKSVSKHKSSSRIICCSWTNDGQY-LALGMFNGTISIRNKNGEE 165 (1081)
T ss_pred CCeeeEeecCchHHHhhhcchhh------ccccChhhhhHHhhhhheeEEEeeecCCCcE-EEEeccCceEEeecCCCCc
Confidence 88999999999999999987432 2245432211111123467889999999985 889999999988752 22
Q ss_pred CceeeeccCcccceEEEEEcCCC-----CEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEe
Q 007283 178 FKFKLSHRGHSNFVNCVRFSPDG-----SKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTAS 252 (609)
Q Consensus 178 ~~~~~~~~~h~~~v~~l~~s~dg-----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s 252 (609)
.-.+....|...+|.+++|+|.. ..++++....++-.|.. +|+.|..-. .-.-.-.|+.+.|+|++++.|+
T Consensus 166 k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r---~L~FdP~CisYf~NGEy~LiGG 241 (1081)
T KOG1538|consen 166 KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDR---ALNFDPCCISYFTNGEYILLGG 241 (1081)
T ss_pred ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccc---cCCCCchhheeccCCcEEEEcc
Confidence 22333445678899999999973 25666777777766654 233332111 1112235788899999999999
Q ss_pred CCCcEEEeecccCCCCceEEEeccCCCCCccceEEE--EEEcCCeEEEEEcCCcEEEEeC
Q 007283 253 ADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVG--CLWQNDFLVIVSLGGTISIFSA 310 (609)
Q Consensus 253 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~i~~~~~ 310 (609)
.|+.+.+|-.+ +....++.. .+.-+.+ .-.+++.++.+..||++..|++
T Consensus 242 sdk~L~~fTR~----GvrLGTvg~-----~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 242 SDKQLSLFTRD----GVRLGTVGE-----QDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred CCCceEEEeec----CeEEeeccc-----cceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 99999999643 334443321 1122222 2234556667777777777764
No 131
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=1.9e-20 Score=164.34 Aligned_cols=303 Identities=17% Similarity=0.309 Sum_probs=207.1
Q ss_pred ccCcCceeEEeecCC-CCeEEEeC-CCEEEEEeCCCCcc---------------ccccccCCCCcEEEEECC-CCCEEEE
Q 007283 13 STERGRGILISGHPK-SNSILYTN-GRSVIILDLSNPLQ---------------VSIYGEHAYPATVARFSP-NGEWIAS 74 (609)
Q Consensus 13 ~~~~~~~~~~~~~~~-~~~l~~~~-~~~~~i~~~~~~~~---------------~~~~~~h~~~v~~~~~sp-~g~~las 74 (609)
.+|+|....++..+- |.++++.+ ++.+.+||+++-.. ...-.+|+..|+.+.|=| |.-++.|
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 578899999998876 57777765 47999999976441 111348888999999988 4456778
Q ss_pred EeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCC--EEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEE
Q 007283 75 ADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGL--RIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCA 152 (609)
Q Consensus 75 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 152 (609)
++.|.+++|||..+-+.. ..| ...+.|+.-++||-.. -|+++|... .-+|+-+...+...+++.||.+.|.++.
T Consensus 120 sSFDhtlKVWDtnTlQ~a-~~F-~me~~VYshamSp~a~sHcLiA~gtr~--~~VrLCDi~SGs~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEA-VDF-KMEGKVYSHAMSPMAMSHCLIAAGTRD--VQVRLCDIASGSFSHTLSGHRDGVLAVE 195 (397)
T ss_pred ccccceEEEeecccceee-EEe-ecCceeehhhcChhhhcceEEEEecCC--CcEEEEeccCCcceeeeccccCceEEEE
Confidence 999999999999875421 223 2467899999999643 566665332 2478888889999999999999999999
Q ss_pred EeeCCCeEEEEecCCCeEEEEeCCCC-ceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCC
Q 007283 153 FKPSRPFRIATCGEDFLVNFYEGPPF-KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDG 231 (609)
Q Consensus 153 ~~p~~~~~i~t~~~d~~i~~~~~~~~-~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 231 (609)
|+|...+++++|+.|+.+++||++.. .+. ++.|...++....+....+
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf-------------------------------~~lD~hn~k~~p~~~~n~a 244 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCF-------------------------------RVLDQHNTKRPPILKTNTA 244 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeeccccee-------------------------------EEeecccCccCcccccccc
Confidence 99999999999999999999997642 111 1112112121111112247
Q ss_pred CccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCC-ceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeC
Q 007283 232 HKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHG-KLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSA 310 (609)
Q Consensus 232 h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~ 310 (609)
|.+.|++++|+.|+.++++++.|..+++|+...+... +............. .+.+.+. ..+.++..-.++.+.++++
T Consensus 245 h~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~-~~~~~~~-~s~vfv~~p~~~~lall~~ 322 (397)
T KOG4283|consen 245 HYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSF-AVHIQSM-DSDVFVLFPNDGSLALLNL 322 (397)
T ss_pred ccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccc-eEEEeec-ccceEEEEecCCeEEEEEc
Confidence 9999999999999999999999999999998643211 00000000000000 0111111 1233444455688888876
Q ss_pred CCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEec
Q 007283 311 NDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQ 354 (609)
Q Consensus 311 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~ 354 (609)
-+. .....+.+|-+.+.+.++- ++=+...++..|+.|..|.+
T Consensus 323 ~sg-s~ir~l~~h~k~i~c~~~~-~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 323 LEG-SFVRRLSTHLKRINCAAYR-PDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cCc-eEEEeeecccceeeEEeec-CchhhhhccccCCccccccc
Confidence 543 2345678898888776653 23356889999999999955
No 132
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=1.2e-20 Score=165.47 Aligned_cols=302 Identities=20% Similarity=0.248 Sum_probs=216.6
Q ss_pred ecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCc------------ee---eeccCcccceEEEEEcCC-CCEEEE
Q 007283 142 DGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFK------------FK---LSHRGHSNFVNCVRFSPD-GSKFIS 205 (609)
Q Consensus 142 ~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~------------~~---~~~~~h~~~v~~l~~s~d-g~~l~s 205 (609)
..|.+.|.++.+.|.....+++|+.|+.+.+||.+... ++ .-..+|+..|..+.|-|- ..++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46889999999999877779999999999999965432 11 113468889999999884 458899
Q ss_pred EeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCC---CeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCc
Q 007283 206 VSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDG---KQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGV 282 (609)
Q Consensus 206 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 282 (609)
++.|.++++||..+-+....+ ..++.|++-++||-. .++|+|..|-.|++.|+.. +
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F----~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S---G-------------- 178 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDF----KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS---G-------------- 178 (397)
T ss_pred ccccceEEEeecccceeeEEe----ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccC---C--------------
Confidence 999999999999887766555 356789999999954 4788999999999999862 1
Q ss_pred cceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCcccccee
Q 007283 283 DDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKL 362 (609)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~ 362 (609)
...+.++||.+.|.++.|++.....++||+.||.|++||.....
T Consensus 179 --------------------------------s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras---- 222 (397)
T KOG4283|consen 179 --------------------------------SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS---- 222 (397)
T ss_pred --------------------------------cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeeccc----
Confidence 12356889999999999998888899999999999999864211
Q ss_pred ccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeE
Q 007283 363 QRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVS 442 (609)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (609)
.|+. +++..+.+. + .. + ..
T Consensus 223 --------gcf~----------------~lD~hn~k~-----------~----------p~-----------~-----~~ 241 (397)
T KOG4283|consen 223 --------GCFR----------------VLDQHNTKR-----------P----------PI-----------L-----KT 241 (397)
T ss_pred --------ceeE----------------EeecccCcc-----------C----------cc-----------c-----cc
Confidence 1111 111100000 0 00 0 00
Q ss_pred EeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEE-EecCCCc---eEEEEECCCCCEEEEEeCCCeEEEE
Q 007283 443 TINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAV-LEKHRGA---VSVIRYSPDVSMFASGDVNREAIVW 518 (609)
Q Consensus 443 ~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~-~~~h~~~---i~~v~~s~~~~~l~s~s~d~~v~iw 518 (609)
...+...+..++++.||.++++.+.|..+++|+...+....+.. ...|... -.-+. +.+...++---.|+++.++
T Consensus 242 n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall 320 (397)
T KOG4283|consen 242 NTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALL 320 (397)
T ss_pred cccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEE
Confidence 01122347889999999999999999999999998765322110 0111111 01122 3444444444566888888
Q ss_pred EccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEc
Q 007283 519 DRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEI 563 (609)
Q Consensus 519 d~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~ 563 (609)
++..++. +..+..|-..|.|.+|-|+=+...+|+.|+.|..|-.
T Consensus 321 ~~~sgs~-ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 321 NLLEGSF-VRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EccCceE-EEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 8777654 4567889999999999999888999999999999976
No 133
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.88 E-value=1.7e-19 Score=173.90 Aligned_cols=188 Identities=20% Similarity=0.294 Sum_probs=130.5
Q ss_pred CCeEEEe---CCCEEEEEeCCC----CccccccccCCCCcEEEEECCC-CCEEEEEeCCCcEEEEcCCCCc--eee---E
Q 007283 28 SNSILYT---NGRSVIILDLSN----PLQVSIYGEHAYPATVARFSPN-GEWIASADVSGTVRIWGAHNDH--VLK---K 94 (609)
Q Consensus 28 ~~~l~~~---~~~~~~i~~~~~----~~~~~~~~~h~~~v~~~~~sp~-g~~las~~~d~~i~vWd~~~~~--~~~---~ 94 (609)
+..|++- .|+.+-|..+.. .+.+..+.+|.+.|+.+.|+|- ..+|||+|.|..|+||.+..+. .+. .
T Consensus 43 ~~flAFn~e~~G~~lgvlPl~~~Gr~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~ 122 (1012)
T KOG1445|consen 43 ADFLAFNIEGEGGKLGVLPLTAKGRRTRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEI 122 (1012)
T ss_pred cceEEEeecCCCceEEEEeccccCccccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcce
Confidence 3455543 244566666642 1234567899999999999994 5688999999999999987432 110 1
Q ss_pred EEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEe
Q 007283 95 EFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYE 174 (609)
Q Consensus 95 ~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~ 174 (609)
.+...+-.|.++.|+|-..-|++++... .+.+|+..+++.+.++.+|.+.|.+..|+.||.. +++...|..|++||
T Consensus 123 ~~g~~~~~vE~l~fHpTaDgil~s~a~g---~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~l-latscKdkqirifD 198 (1012)
T KOG1445|consen 123 DVGGGNVIVECLRFHPTADGILASGAHG---SVYITDISTQKTAVELSGHTDKVQSADWSEDGKL-LATSCKDKQIRIFD 198 (1012)
T ss_pred eecCCceEEEEeecccCcCceEEeccCc---eEEEEEcccCceeecccCCchhhhccccccCCce-EeeecCCcceEEeC
Confidence 1222344689999999655555555433 3567777788889999999999999999999984 88889999999999
Q ss_pred CCC-CceeeeccCcccc-eEEEEEcCCCCEEEEEeCC----CcEEEEeCCC
Q 007283 175 GPP-FKFKLSHRGHSNF-VNCVRFSPDGSKFISVSSD----KKGIIYDGKT 219 (609)
Q Consensus 175 ~~~-~~~~~~~~~h~~~-v~~l~~s~dg~~l~s~~~d----~~i~iwd~~~ 219 (609)
.+. .+.++...+|.+. =..+.|.-+-..|++-+.+ ..+++||.+.
T Consensus 199 PRa~~~piQ~te~H~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~ 249 (1012)
T KOG1445|consen 199 PRASMEPIQTTEGHGGMRDSRVLWAGNWERLISTGFTTKRIREVRAYDTRK 249 (1012)
T ss_pred CccCCCccccccccccchhheeeeccchhhhhhcccchhhheeeeeeeccc
Confidence 653 3445555677642 2345676654566665543 4578888654
No 134
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=3.2e-20 Score=164.38 Aligned_cols=281 Identities=18% Similarity=0.213 Sum_probs=196.7
Q ss_pred CccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccc
Q 007283 145 SRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIG 224 (609)
Q Consensus 145 ~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~ 224 (609)
.+.|.++.|+|.+.. ++++++|+.+++|+.+.......+ .|..++.+++|.++. .+++|+.|+.|+.+|..+++...
T Consensus 13 ~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~~-~~~~G~~dg~vr~~Dln~~~~~~ 89 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADES-TIVTGGLDGQVRRYDLNTGNEDQ 89 (323)
T ss_pred hhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccCCc-eEEEeccCceEEEEEecCCccee
Confidence 567999999988876 556679999999998877554444 488899999999864 68999999999999998887543
Q ss_pred ccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCc
Q 007283 225 ELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGT 304 (609)
Q Consensus 225 ~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 304 (609)
.. .|...|.++.+++....+++||.|++|++||.+.. ....++.. ...+.+..-.++.|++++.+..
T Consensus 90 ig----th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~---~~~~~~d~------~kkVy~~~v~g~~LvVg~~~r~ 156 (323)
T KOG1036|consen 90 IG----THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK---VVVGTFDQ------GKKVYCMDVSGNRLVVGTSDRK 156 (323)
T ss_pred ec----cCCCceEEEEeeccCCeEEEcccCccEEEEecccc---cccccccc------CceEEEEeccCCEEEEeecCce
Confidence 32 69999999999998888999999999999998731 11111111 1123334446788999999999
Q ss_pred EEEEeCCCCCCCce-eeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEE
Q 007283 305 ISIFSANDLEKSPL-QLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTS 383 (609)
Q Consensus 305 i~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (609)
+.+|+++....... .-..-.-.+.++++.+ +..-++.+|-||.|.+=..+.....+ +
T Consensus 157 v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~------s--------------- 214 (323)
T KOG1036|consen 157 VLIYDLRNLDEPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQ------S--------------- 214 (323)
T ss_pred EEEEEcccccchhhhccccceeEEEEEEEec-CCCceEEEeecceEEEEccCCchHHh------h---------------
Confidence 99999876543321 1112223566777765 44557788889988765443220000 0
Q ss_pred eccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEE
Q 007283 384 GFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAI 463 (609)
Q Consensus 384 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~ 463 (609)
...++.-|.. .+++. ..-.||++++|+|-.+.||
T Consensus 215 ----------------------------kkyaFkCHr~------~~~~~------------~~~yPVNai~Fhp~~~tfa 248 (323)
T KOG1036|consen 215 ----------------------------KKYAFKCHRL------SEKDT------------EIIYPVNAIAFHPIHGTFA 248 (323)
T ss_pred ----------------------------hceeEEeeec------ccCCc------------eEEEEeceeEeccccceEE
Confidence 0000000000 00000 0115799999999999999
Q ss_pred EEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeC
Q 007283 464 IGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDV 511 (609)
Q Consensus 464 ~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~ 511 (609)
+|+.||.|.+||....+. ...+.+....|.+++|+.||..||.|+.
T Consensus 249 TgGsDG~V~~Wd~~~rKr--l~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 249 TGGSDGIVNIWDLFNRKR--LKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ecCCCceEEEccCcchhh--hhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999999999999875542 2345566778999999999999999874
No 135
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.3e-20 Score=164.97 Aligned_cols=270 Identities=21% Similarity=0.377 Sum_probs=178.0
Q ss_pred cCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccccc-CcCCCCccceEEEEECC--CCCeEEEEeCCCcEEEee
Q 007283 185 RGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGEL-SPEDGHKGSVYAVSWSP--DGKQVLTASADKSAKVWD 261 (609)
Q Consensus 185 ~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~h~~~V~~l~~sp--d~~~l~s~s~d~~i~iwd 261 (609)
.+|.+-|+|+.|.+-|+.+|+++.|+++.|||.+....-... ..-+.|.+.|..+.|.+ -|+.+|++|.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 468889999999999999999999999999996443321111 12247999999999965 589999999999999997
Q ss_pred cccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCC-CCEE
Q 007283 262 ISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNID-PKVI 340 (609)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~ 340 (609)
-... .....+ +-| .....+......|+.+.|.+.. +-.+
T Consensus 90 E~~~-------~~~~~~---------------------------~~W------v~~ttl~DsrssV~DV~FaP~hlGLkl 129 (361)
T KOG2445|consen 90 EQEK-------SEEAHG---------------------------RRW------VRRTTLVDSRSSVTDVKFAPKHLGLKL 129 (361)
T ss_pred eccc-------cccccc---------------------------cee------EEEEEeecCCcceeEEEecchhcceEE
Confidence 4211 000000 001 0112344455677777777433 3467
Q ss_pred EEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccC
Q 007283 341 LSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHY 420 (609)
Q Consensus 341 ~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (609)
++++.||.+|+++.-.-. .+..|.++.
T Consensus 130 A~~~aDG~lRIYEA~dp~-----------------------------nLs~W~Lq~------------------------ 156 (361)
T KOG2445|consen 130 AAASADGILRIYEAPDPM-----------------------------NLSQWTLQH------------------------ 156 (361)
T ss_pred EEeccCcEEEEEecCCcc-----------------------------ccccchhhh------------------------
Confidence 888888888887431100 011111110
Q ss_pred CcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEEC
Q 007283 421 PELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYS 500 (609)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s 500 (609)
++..+. .....+..+..||.|+
T Consensus 157 ----------------------------Ei~~~~------------------------------~pp~~~~~~~~CvsWn 178 (361)
T KOG2445|consen 157 ----------------------------EIQNVI------------------------------DPPGKNKQPCFCVSWN 178 (361)
T ss_pred ----------------------------hhhhcc------------------------------CCcccccCcceEEeec
Confidence 000000 0112344455666666
Q ss_pred CC---CCEEEEEeCC-----CeEEEEEccCCce---EEeeecCCCCceEEEEECCCC----cEEEEEeCCCeEEEEEcCC
Q 007283 501 PD---VSMFASGDVN-----REAIVWDRVSREV---KLKNMLYHTARINCLAWSPNN----SMVATGSLDTCVIIYEIDK 565 (609)
Q Consensus 501 ~~---~~~l~s~s~d-----~~v~iwd~~~~~~---~~~~~~~h~~~i~~l~~s~d~----~~l~s~s~D~~v~vw~~~~ 565 (609)
|. -.+||.|+.+ +.++||....... +...+..|.++|+.++|.|+- .+||+|+.|| |+||++..
T Consensus 179 ~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 179 PSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKV 257 (361)
T ss_pred cccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEee
Confidence 54 3567777655 4688887554332 234567899999999999963 5799999999 99999862
Q ss_pred CC------------------CcceeEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEc
Q 007283 566 PA------------------SSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRL 606 (609)
Q Consensus 566 ~~------------------~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~ 606 (609)
.. .+++..+..|.+.||.+.|. -+..|+|.|.||++++|..
T Consensus 258 ~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 258 ARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred ccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 11 01123467899999999999 8899999999999999975
No 136
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=1e-20 Score=182.62 Aligned_cols=300 Identities=19% Similarity=0.197 Sum_probs=211.4
Q ss_pred cccCCCCcEE--EEECC---CCCEEEEEeCCCcEEEEcCCCCce-----eeEEEeecccceeEEEECCCCCEEEEEECCC
Q 007283 53 YGEHAYPATV--ARFSP---NGEWIASADVSGTVRIWGAHNDHV-----LKKEFRVLSGRIDDLQWSPDGLRIVACGDGK 122 (609)
Q Consensus 53 ~~~h~~~v~~--~~~sp---~g~~las~~~d~~i~vWd~~~~~~-----~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~ 122 (609)
+..|.-++.- ..|++ ...+||-+..||.|.++|...... ....+..|...|..+.|-|....|++...
T Consensus 43 ~~~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasG-- 120 (720)
T KOG0321|consen 43 YANDGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASG-- 120 (720)
T ss_pred cccCCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccC--
Confidence 4444445544 56665 346788999999999999864321 11335568889999999995556665543
Q ss_pred CcceEEEEEcCCCCeeEE--EecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCc---------------------
Q 007283 123 GKSLVRAFMWDSGTNVGE--FDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFK--------------------- 179 (609)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~--------------------- 179 (609)
++.+++|+....+..+. +.||...|.+++|+|+++.+|++||.|+.+.+||..-..
T Consensus 121 -DsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp 199 (720)
T KOG0321|consen 121 -DSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP 199 (720)
T ss_pred -CceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence 34688888888877766 889999999999999999999999999999999842110
Q ss_pred ------eeeeccCcccceEE---EEEcCCCCEEEEEeC-CCcEEEEeCCCCccccccCcC-----CCC---ccceEEEEE
Q 007283 180 ------FKLSHRGHSNFVNC---VRFSPDGSKFISVSS-DKKGIIYDGKTADKIGELSPE-----DGH---KGSVYAVSW 241 (609)
Q Consensus 180 ------~~~~~~~h~~~v~~---l~~s~dg~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~-----~~h---~~~V~~l~~ 241 (609)
....-+.|...|.+ +.+..|...||+++. |+.|++||+++........+. ..| .-.+.++..
T Consensus 200 skp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~l 279 (720)
T KOG0321|consen 200 SKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLIL 279 (720)
T ss_pred CchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEe
Confidence 00111223344444 555678889999988 999999999876655433211 122 235677777
Q ss_pred CCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccc-eEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceee
Q 007283 242 SPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDD-MLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQL 320 (609)
Q Consensus 242 spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~ 320 (609)
...|.+|+..+.|+.|++|++..... .....+.... .... ......+.+.++++++.+...++|.+...+..+..+
T Consensus 280 DssGt~L~AsCtD~sIy~ynm~s~s~-sP~~~~sg~~--~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l 356 (720)
T KOG0321|consen 280 DSSGTYLFASCTDNSIYFYNMRSLSI-SPVAEFSGKL--NSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL 356 (720)
T ss_pred cCCCCeEEEEecCCcEEEEeccccCc-CchhhccCcc--cceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh
Confidence 77788888888899999999863211 1111111000 0000 112234567799999999999999998888788889
Q ss_pred eCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccc
Q 007283 321 SGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGY 358 (609)
Q Consensus 321 ~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~ 358 (609)
.||...|.++++.+..-.-++||++|.++++|++..+.
T Consensus 357 ~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 357 LGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred hCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 99999999999986555568899999999999885543
No 137
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=7.4e-20 Score=161.75 Aligned_cols=270 Identities=17% Similarity=0.300 Sum_probs=187.9
Q ss_pred ccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCc---eeeEEEeecccceeEEEECCC--CCEEEEEECCCCcce
Q 007283 52 IYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDH---VLKKEFRVLSGRIDDLQWSPD--GLRIVACGDGKGKSL 126 (609)
Q Consensus 52 ~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~---~~~~~~~~~~~~v~~~~~spd--g~~l~~~~~~~~~~~ 126 (609)
+..+|++-|.++.|.+-|+.+||++.|++|+|||...+. .+....+.|.+.|..+.|.+- |+.+++++.+++
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt--- 84 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT--- 84 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc---
Confidence 456899999999999999999999999999999975432 344567889999999999874 899999987664
Q ss_pred EEEEEcCCC---------CeeEEEecCCccEEEEEEeeCC-CeEEEEecCCCeEEEEeCCC------Cceeeecc-----
Q 007283 127 VRAFMWDSG---------TNVGEFDGHSRRVLSCAFKPSR-PFRIATCGEDFLVNFYEGPP------FKFKLSHR----- 185 (609)
Q Consensus 127 ~~~~~~~~~---------~~~~~~~~h~~~v~~~~~~p~~-~~~i~t~~~d~~i~~~~~~~------~~~~~~~~----- 185 (609)
+++|.=+.. ....++......|+.+.|.|.. ...+|+++.|+++++|+.+. +.+..++.
T Consensus 85 v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~p 164 (361)
T KOG2445|consen 85 VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDP 164 (361)
T ss_pred eeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCC
Confidence 334332100 1133566777899999999863 34699999999999998532 22222222
Q ss_pred --CcccceEEEEEcCC---CCEEEEEeCC-----CcEEEEeCCCCc-cccccCcCCCCccceEEEEECCCC----CeEEE
Q 007283 186 --GHSNFVNCVRFSPD---GSKFISVSSD-----KKGIIYDGKTAD-KIGELSPEDGHKGSVYAVSWSPDG----KQVLT 250 (609)
Q Consensus 186 --~h~~~v~~l~~s~d---g~~l~s~~~d-----~~i~iwd~~~~~-~~~~~~~~~~h~~~V~~l~~spd~----~~l~s 250 (609)
.+...-.|+.|+|. ..+||.|+.+ +.++||...... +........+|+.+|+.++|.|+- .+||+
T Consensus 165 p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAv 244 (361)
T KOG2445|consen 165 PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAV 244 (361)
T ss_pred cccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEE
Confidence 46677889999975 4478877766 478888754433 333333345899999999999962 47999
Q ss_pred EeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEE
Q 007283 251 ASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTAL 330 (609)
Q Consensus 251 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~ 330 (609)
++.|| |+||.+.............. +.... .+. -....++.+|...|..+
T Consensus 245 A~kDg-v~I~~v~~~~s~i~~ee~~~--~~~~~--------------------~l~-------v~~vs~~~~H~~~VWrv 294 (361)
T KOG2445|consen 245 ATKDG-VRIFKVKVARSAIEEEEVLA--PDLMT--------------------DLP-------VEKVSELDDHNGEVWRV 294 (361)
T ss_pred eecCc-EEEEEEeeccchhhhhcccC--CCCcc--------------------ccc-------eEEeeeccCCCCceEEE
Confidence 99999 99999863211100000000 00000 000 01123467899999999
Q ss_pred EEecCCCCEEEEEecCCcEEEEecC
Q 007283 331 TVLNIDPKVILSSSYDGLIVKWIQG 355 (609)
Q Consensus 331 ~~~~~~~~~~~t~s~dg~i~~W~~~ 355 (609)
.+. ..+..+++.|.||+||+|..+
T Consensus 295 ~wN-mtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 295 RWN-MTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEe-eeeeEEeecCCCceeeehhhh
Confidence 986 456789999999999999543
No 138
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.87 E-value=1.1e-18 Score=170.72 Aligned_cols=286 Identities=16% Similarity=0.156 Sum_probs=184.6
Q ss_pred EEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCccccccCcCCCCccceEE
Q 007283 160 RIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKF-ISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYA 238 (609)
Q Consensus 160 ~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~ 238 (609)
.+++++.|+.+.+||..+++....+.++.. +.+++|+|+|+.+ ++++.++.+++||..+++....+. .+. .+..
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---~~~-~~~~ 77 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP---SGP-DPEL 77 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc---CCC-CccE
Confidence 588999999999999988887777766544 6789999999876 567788999999998887665442 222 3567
Q ss_pred EEECCCCCeEEEE-eCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCc
Q 007283 239 VSWSPDGKQVLTA-SADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSP 317 (609)
Q Consensus 239 l~~spd~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~ 317 (609)
++|+|+++.++.+ +.|+.+++||+.. .+....+.
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~---~~~~~~~~------------------------------------------ 112 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIET---RKVLAEIP------------------------------------------ 112 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCC---CeEEeEee------------------------------------------
Confidence 8999999977554 5689999999863 22211110
Q ss_pred eeeeCCCCCeEEEEEecCCCCEEEEEecCCc-EEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccC
Q 007283 318 LQLSGHMKNVTALTVLNIDPKVILSSSYDGL-IVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQG 396 (609)
Q Consensus 318 ~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~-i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 396 (609)
+...+..+++++ ++.++++++.++. +..|+..... .
T Consensus 113 -----~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~---------------------~---------------- 149 (300)
T TIGR03866 113 -----VGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYE---------------------I---------------- 149 (300)
T ss_pred -----CCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCe---------------------E----------------
Confidence 001123345543 4466666666554 3344321100 0
Q ss_pred CccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEE-eCCCcEEEEE
Q 007283 397 DQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIG-SQDGKLRVYS 475 (609)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~g-s~dg~i~iw~ 475 (609)
............++++|+|++++++ ..++.|++||
T Consensus 150 --------------------------------------------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d 185 (300)
T TIGR03866 150 --------------------------------------------VDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVID 185 (300)
T ss_pred --------------------------------------------EEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEE
Confidence 0000001123457889999988655 4699999999
Q ss_pred ecCCeeeeeEEEec---CCC--ceEEEEECCCCCEEEE-EeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEE
Q 007283 476 IRGDTLTEEAVLEK---HRG--AVSVIRYSPDVSMFAS-GDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMV 549 (609)
Q Consensus 476 ~~~~~~~~~~~~~~---h~~--~i~~v~~s~~~~~l~s-~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l 549 (609)
++++.......... +.. ....++|+|+++++.. ...++++.+||..+.+.. ... .+...+.+++|+|+|++|
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~-~~~-~~~~~~~~~~~~~~g~~l 263 (300)
T TIGR03866 186 VATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL-DYL-LVGQRVWQLAFTPDEKYL 263 (300)
T ss_pred cCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE-EEE-EeCCCcceEEECCCCCEE
Confidence 98765432222111 111 2346889999998544 345678999998765543 222 345579999999999999
Q ss_pred EEE-eCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc
Q 007283 550 ATG-SLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT 587 (609)
Q Consensus 550 ~s~-s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s 587 (609)
+++ ..+++|++||+.... .+..+.. ....+.++|+
T Consensus 264 ~~~~~~~~~i~v~d~~~~~-~~~~~~~--~~~~~~~~~~ 299 (300)
T TIGR03866 264 LTTNGVSNDVSVIDVAALK-VIKSIKV--GRLPWGVVVR 299 (300)
T ss_pred EEEcCCCCeEEEEECCCCc-EEEEEEc--ccccceeEeC
Confidence 876 569999999998643 2223322 2445777765
No 139
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.87 E-value=1e-18 Score=170.87 Aligned_cols=185 Identities=17% Similarity=0.198 Sum_probs=134.2
Q ss_pred CCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccE
Q 007283 69 GEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRV 148 (609)
Q Consensus 69 g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 148 (609)
+++++|++.|++|++||..+++.+ ..+..+ ..+..++|+|||+.+++++... ..+++|+.+.+.....+..+.. +
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~-~~~~~~-~~~~~l~~~~dg~~l~~~~~~~--~~v~~~d~~~~~~~~~~~~~~~-~ 75 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVT-RTFPVG-QRPRGITLSKDGKLLYVCASDS--DTIQVIDLATGEVIGTLPSGPD-P 75 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceE-EEEECC-CCCCceEECCCCCEEEEEECCC--CeEEEEECCCCcEEEeccCCCC-c
Confidence 467889999999999999887643 344443 3467899999999886655332 2455666666666665655443 4
Q ss_pred EEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCC-cEEEEeCCCCccccccC
Q 007283 149 LSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDK-KGIIYDGKTADKIGELS 227 (609)
Q Consensus 149 ~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~-~i~iwd~~~~~~~~~~~ 227 (609)
..++|+|++..++++++.++.+.+||..+.+....+.. ...+.+++|+|+|+++++++.++ .+.+||..+++......
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~ 154 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL 154 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Confidence 67899999987677778889999999887766555542 23467899999999999888775 46677987776554331
Q ss_pred cCCCCccceEEEEECCCCCeEEEE-eCCCcEEEeecc
Q 007283 228 PEDGHKGSVYAVSWSPDGKQVLTA-SADKSAKVWDIS 263 (609)
Q Consensus 228 ~~~~h~~~V~~l~~spd~~~l~s~-s~d~~i~iwd~~ 263 (609)
......+++|+|++++|+.+ ..++.|++||+.
T Consensus 155 ----~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~ 187 (300)
T TIGR03866 155 ----VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVA 187 (300)
T ss_pred ----cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcC
Confidence 12345789999999988544 468999999986
No 140
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.86 E-value=3e-20 Score=174.34 Aligned_cols=284 Identities=18% Similarity=0.235 Sum_probs=208.7
Q ss_pred cCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCC--CCccceEEEEECCCCCeEEEEeCCCcEEEeec
Q 007283 185 RGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPED--GHKGSVYAVSWSPDGKQVLTASADKSAKVWDI 262 (609)
Q Consensus 185 ~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~ 262 (609)
-.|..-|..+.+|...+.+.||+. |.|+|||+.........+... .....|.++.++|||+.|++|+.-.++.|||+
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 357788889999999888888764 679999986543222221111 23457899999999999999999999999998
Q ss_pred ccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEE
Q 007283 263 SEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILS 342 (609)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t 342 (609)
... ..+++..+.. ..-..++++.+ .+.++..+
T Consensus 495 Aap-Tprikaelts----------------------------------------------sapaCyALa~s-pDakvcFs 526 (705)
T KOG0639|consen 495 AAP-TPRIKAELTS----------------------------------------------SAPACYALAIS-PDAKVCFS 526 (705)
T ss_pred cCC-CcchhhhcCC----------------------------------------------cchhhhhhhcC-Cccceeee
Confidence 642 1122211111 11123344443 35578999
Q ss_pred EecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCc
Q 007283 343 SSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPE 422 (609)
Q Consensus 343 ~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (609)
|..||.|++||+.+...
T Consensus 527 ccsdGnI~vwDLhnq~~--------------------------------------------------------------- 543 (705)
T KOG0639|consen 527 CCSDGNIAVWDLHNQTL--------------------------------------------------------------- 543 (705)
T ss_pred eccCCcEEEEEccccee---------------------------------------------------------------
Confidence 99999999998643110
Q ss_pred EEEEEecccEEEeeCCeeeEEe-ccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECC
Q 007283 423 LVLVSTDSGVVLLRGAEVVSTI-NLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSP 501 (609)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~ 501 (609)
++.+ .+.....|+.+++||..|-+|+-|.+||.||++.+... ....+...|.++.++|
T Consensus 544 ------------------VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql---qqhdF~SQIfSLg~cP 602 (705)
T KOG0639|consen 544 ------------------VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL---QQHDFSSQIFSLGYCP 602 (705)
T ss_pred ------------------eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh---hhhhhhhhheecccCC
Confidence 0000 02234788999999999999999999999999766431 1123467899999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCe
Q 007283 502 DVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGV 581 (609)
Q Consensus 502 ~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v 581 (609)
++..++.|-.++.+-+......+. -.+..|..-|.++.|++-|+|+++-+.|+.+-.|...-+. .+.. .-.+..|
T Consensus 603 ~~dWlavGMens~vevlh~skp~k--yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGa-siFq--skE~SsV 677 (705)
T KOG0639|consen 603 TGDWLAVGMENSNVEVLHTSKPEK--YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA-SIFQ--SKESSSV 677 (705)
T ss_pred CccceeeecccCcEEEEecCCccc--eeecccccEEEEEEecccCceeeecCchhhhhhccCcccc-ceee--ccccCcc
Confidence 999999999999988887554432 2356788999999999999999999999999999876433 2222 2357789
Q ss_pred EEEEEc-CCCeEEEEeCCCcEEEEEc
Q 007283 582 YGLAFT-DEHSVVSSGEDACVRVWRL 606 (609)
Q Consensus 582 ~~~~~s-~~~~l~s~s~D~~i~~W~~ 606 (609)
.++..| |+++|+|||.|+..-|+.+
T Consensus 678 lsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 678 LSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeeeeccCceEEEecCCCcceEEEEE
Confidence 999999 8999999999999888876
No 141
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=5e-20 Score=164.24 Aligned_cols=330 Identities=20% Similarity=0.274 Sum_probs=213.7
Q ss_pred eecccceeEEEECC-----CCCEEEEEECCCCcceEEEEEcCCCC---eeEEE--ecCCccEEEEEEee---CCCeEEEE
Q 007283 97 RVLSGRIDDLQWSP-----DGLRIVACGDGKGKSLVRAFMWDSGT---NVGEF--DGHSRRVLSCAFKP---SRPFRIAT 163 (609)
Q Consensus 97 ~~~~~~v~~~~~sp-----dg~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~h~~~v~~~~~~p---~~~~~i~t 163 (609)
..|+.+|..++|.+ +-+.++++|.+ .+.++...... .+..+ ..|....+.|+|.- ++...+|.
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~----rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGN----RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCCc----EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 34567788888875 12345555432 23333333221 22222 24666788888863 33446888
Q ss_pred ecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEEC
Q 007283 164 CGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDG-SKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWS 242 (609)
Q Consensus 164 ~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~s 242 (609)
+|.-|.|++-|....++...+.+|...|+.+.|.|+. +++++||.|..+++|++++..++..+.-..||.+.|.++.|+
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~ 190 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFS 190 (385)
T ss_pred ecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEc
Confidence 8899999999999999999999999999999999985 588999999999999999999988887778999999999999
Q ss_pred CCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCc--eee
Q 007283 243 PDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSP--LQL 320 (609)
Q Consensus 243 pd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~--~~~ 320 (609)
++|.+|+++|.|.++++|+++.+. ....+... .. + +.+++.+-+-.. ....+ .+.
T Consensus 191 ~~gd~i~ScGmDhslk~W~l~~~~---f~~~lE~s---------~~--~--------~~~~t~~pfpt~-~~~fp~fst~ 247 (385)
T KOG1034|consen 191 LDGDRIASCGMDHSLKLWRLNVKE---FKNKLELS---------IT--Y--------SPNKTTRPFPTP-KTHFPDFSTT 247 (385)
T ss_pred CCCCeeeccCCcceEEEEecChhH---Hhhhhhhh---------cc--c--------CCCCccCcCCcc-cccccccccc
Confidence 999999999999999999986321 11100000 00 0 000110000000 00000 022
Q ss_pred eCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeC-CcEEEEeccceEEEEeccCCcc
Q 007283 321 SGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIE-EEIVTSGFDNKIWRVSLQGDQC 399 (609)
Q Consensus 321 ~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~ 399 (609)
.-|...|.|+.|.. .++++-|-++.|..|..+.- .+.+..+...+ ...+ +..++.+
T Consensus 248 diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl---------~e~~~~vkp~es~~Ti-------~~~~~~~---- 304 (385)
T KOG1034|consen 248 DIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKL---------EESIHNVKPPESATTI-------LGEFDYP---- 304 (385)
T ss_pred ccccchHHHHHHHh---hheeecccCceEEEEecchh---------hhhhhccCCCccceee-------eeEeccC----
Confidence 34888888888763 68899999999999965310 00000000000 0000 0000000
Q ss_pred ccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCC
Q 007283 400 GYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGD 479 (609)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~ 479 (609)
.+.-...-.++.|-++.||.|.+.|.|++||++..
T Consensus 305 ---------------------------------------------~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ 339 (385)
T KOG1034|consen 305 ---------------------------------------------MCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNN 339 (385)
T ss_pred ---------------------------------------------ccceEEEEEeecHHHHHHhhccCCCcEEEEECCCC
Confidence 00011223467888999999999999999999765
Q ss_pred eeeeeEEEe--cCCCceEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 007283 480 TLTEEAVLE--KHRGAVSVIRYSPDVSMFASGDVNREAIVWDRV 521 (609)
Q Consensus 480 ~~~~~~~~~--~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~ 521 (609)
......++. .-...|...+||.||.+++....|++|--||..
T Consensus 340 ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 340 EPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 432112222 224568899999999999999999999999853
No 142
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.86 E-value=3.5e-20 Score=168.11 Aligned_cols=209 Identities=21% Similarity=0.291 Sum_probs=155.4
Q ss_pred cccCCCCcEEEEECCCC--CEEEEEeCCCcEEEEcCCCC-------c--------eeeEEEeecccceeEEEECCCCC-E
Q 007283 53 YGEHAYPATVARFSPNG--EWIASADVSGTVRIWGAHND-------H--------VLKKEFRVLSGRIDDLQWSPDGL-R 114 (609)
Q Consensus 53 ~~~h~~~v~~~~~sp~g--~~las~~~d~~i~vWd~~~~-------~--------~~~~~~~~~~~~v~~~~~spdg~-~ 114 (609)
.-+|.+.++.++.+|-| .+.|+-+..|.|+||++... + ....++..|.+.-++++|||-.. +
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 34788899999998866 45667777899999987531 1 11234556777779999999321 3
Q ss_pred EEEEECCCCcceEEEEEcCCCCe---eEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCC--ceeeeccCccc
Q 007283 115 IVACGDGKGKSLVRAFMWDSGTN---VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF--KFKLSHRGHSN 189 (609)
Q Consensus 115 l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~--~~~~~~~~h~~ 189 (609)
|++ ||- ...+++|....+.- ..-|.+|+..|..+.|+|....+|++|+-|+.|++||.+.+ +.....+.|..
T Consensus 227 Lls-GDc--~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~s 303 (440)
T KOG0302|consen 227 LLS-GDC--VKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNS 303 (440)
T ss_pred ccc-Ccc--ccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCC
Confidence 443 322 22344444444321 22356899999999999999889999999999999998765 22233478999
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCC-CCeEEEEeCCCcEEEeeccc
Q 007283 190 FVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD-GKQVLTASADKSAKVWDISE 264 (609)
Q Consensus 190 ~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd-~~~l~s~s~d~~i~iwd~~~ 264 (609)
.|+.+.|+.+-.+||+|++||++.|||++.-+.-..+...+-|+.+|+++.|+|. ...|+++|.|.+|.+||+..
T Consensus 304 DVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 304 DVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred ceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 9999999999889999999999999998765433222233569999999999995 45788888999999999864
No 143
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=1.3e-21 Score=191.33 Aligned_cols=218 Identities=19% Similarity=0.299 Sum_probs=186.3
Q ss_pred CeEEEeC-CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEE
Q 007283 29 NSILYTN-GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQ 107 (609)
Q Consensus 29 ~~l~~~~-~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~ 107 (609)
..++.++ ...+.+|....+.....|.+|..+|.++.|+++..+|++|+.+|+||+||++..+.+ +++.+|..++..+.
T Consensus 41 r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~v-rtLtgh~~~~~sv~ 119 (825)
T KOG0267|consen 41 RSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIV-RTLTGHLLNITSVD 119 (825)
T ss_pred eeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhh-hhhhccccCcceee
Confidence 3444432 367779999888877778999999999999999999999999999999999988754 47889999999999
Q ss_pred ECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCc
Q 007283 108 WSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGH 187 (609)
Q Consensus 108 ~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h 187 (609)
|+|-|.+.+..+.+. .+.+|+-....+.+.+++|...|..+.|+|+|.+ ++.|+.|..+++||...++....|.+|
T Consensus 120 f~P~~~~~a~gStdt---d~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~-v~~g~ed~tvki~d~~agk~~~ef~~~ 195 (825)
T KOG0267|consen 120 FHPYGEFFASGSTDT---DLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRW-VASGGEDNTVKIWDLTAGKLSKEFKSH 195 (825)
T ss_pred eccceEEeccccccc---cceehhhhccCceeeecCCcceeEEEeecCCCce-eeccCCcceeeeecccccccccccccc
Confidence 999998885433322 2445555556788999999999999999999986 899999999999999999999999999
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCC
Q 007283 188 SNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASAD 254 (609)
Q Consensus 188 ~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d 254 (609)
...+..+.|+|..-++++|+.|+++++||.++.+.+.... .....|.++.|.|+++.+++|-..
T Consensus 196 e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~---~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 196 EGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK---PETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred cccccccccCchhhhhccCCCCceeeeeccceeEEeeccC---CccCCceeeeecCCceeeecCchh
Confidence 9999999999999999999999999999999888776654 346789999999999998888654
No 144
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=1.6e-19 Score=173.13 Aligned_cols=320 Identities=17% Similarity=0.226 Sum_probs=216.4
Q ss_pred ceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCe-EEEEeCCCcE
Q 007283 179 KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQ-VLTASADKSA 257 (609)
Q Consensus 179 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~-l~s~s~d~~i 257 (609)
.+...++||.+.|.|+...|.|.+|++|+.||+++||.+.++.++.++. ..+.|.+++|+|.+.. ++.++.+..+
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~----~d~~I~~vaw~P~~~~~vLAvA~~~~~ 466 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ----FDSEIRSVAWNPLSDLCVLAVAVGECV 466 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe----ecceeEEEEecCCCCceeEEEEecCce
Confidence 3445689999999999999999999999999999999999999998873 4568999999998763 3333344456
Q ss_pred EEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEE----EcCCcEEEEeCCC---CCCCceeeeCCCCCeEEE
Q 007283 258 KVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIV----SLGGTISIFSAND---LEKSPLQLSGHMKNVTAL 330 (609)
Q Consensus 258 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~i~~~~~~~---~~~~~~~~~~h~~~v~~~ 330 (609)
.|-+...+. ++....+ ...++.+ .-++.+..|.-.. ........-.|.+.|..+
T Consensus 467 ~ivnp~~G~--~~e~~~t-----------------~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~v 527 (733)
T KOG0650|consen 467 LIVNPIFGD--RLEVGPT-----------------KELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQV 527 (733)
T ss_pred EEeCccccc--hhhhcch-----------------hhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCcccee
Confidence 666543210 0000000 0000000 1123445554321 122223334578888888
Q ss_pred EEecCCCCEEEEEecCC---cEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCcccccccccc
Q 007283 331 TVLNIDPKVILSSSYDG---LIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDI 407 (609)
Q Consensus 331 ~~~~~~~~~~~t~s~dg---~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~ 407 (609)
.++.. +.++++...|+ .|.+..+...
T Consensus 528 tWHrk-GDYlatV~~~~~~~~VliHQLSK~-------------------------------------------------- 556 (733)
T KOG0650|consen 528 TWHRK-GDYLATVMPDSGNKSVLIHQLSKR-------------------------------------------------- 556 (733)
T ss_pred eeecC-CceEEEeccCCCcceEEEEecccc--------------------------------------------------
Confidence 88743 45666654432 1222211000
Q ss_pred CCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEE
Q 007283 408 GSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVL 487 (609)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~ 487 (609)
.....+. ..+..+.++.|+|...+++++++ ..|||||+....+. +.+
T Consensus 557 ---~sQ~PF~---------------------------kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelv--KkL 603 (733)
T KOG0650|consen 557 ---KSQSPFR---------------------------KSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELV--KKL 603 (733)
T ss_pred ---cccCchh---------------------------hcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHH--HHH
Confidence 0000000 01234677889999988888874 67999999765443 233
Q ss_pred ecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCC-
Q 007283 488 EKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKP- 566 (609)
Q Consensus 488 ~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~- 566 (609)
......|..++.+|.|.-++.|+.|+.+..+|+.-.....+.+..|...+++|+|++.=.++++|+.||++.||.-.-.
T Consensus 604 ~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~ 683 (733)
T KOG0650|consen 604 LTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYN 683 (733)
T ss_pred hcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeeh
Confidence 3445679999999999999999999999999987666667778899999999999999999999999999999863211
Q ss_pred ---CCcc---eeEeccccCC----eEEEEEc-CCCeEEEEeCCCcEEEEE
Q 007283 567 ---ASSR---MTIKGAHLGG----VYGLAFT-DEHSVVSSGEDACVRVWR 605 (609)
Q Consensus 567 ---~~~~---~~~~~~h~~~----v~~~~~s-~~~~l~s~s~D~~i~~W~ 605 (609)
+..+ +..+.||... |..+.|. -..+|+|+|+|++|++|.
T Consensus 684 Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 684 DLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred hhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 1111 3346688765 8888999 467899999999999994
No 145
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=9.8e-20 Score=169.87 Aligned_cols=224 Identities=19% Similarity=0.222 Sum_probs=183.6
Q ss_pred cCceeEEeecCCCCeEEEe-CCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCC------
Q 007283 16 RGRGILISGHPKSNSILYT-NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHN------ 88 (609)
Q Consensus 16 ~~~~~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~------ 88 (609)
-|...++..+|.|.+++.. -.+.+++|.+++++.+.++.+|=.+|+|+.|+-||.+|.||+.||.|.+|++.+
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence 4667799999999998876 568999999999999999999999999999999999999999999999997642
Q ss_pred C-c-eeeEEEeecccceeEEEECCCC--CEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEe
Q 007283 89 D-H-VLKKEFRVLSGRIDDLQWSPDG--LRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATC 164 (609)
Q Consensus 89 ~-~-~~~~~~~~~~~~v~~~~~spdg--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~ 164 (609)
. . .-.+.|..|.-+|+.+...+.| .+|++++.+. .+++|+...+..+.++.- ...+.+++.+|-+. ++..|
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~---t~k~wdlS~g~LLlti~f-p~si~av~lDpae~-~~yiG 235 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDR---TIKLWDLSLGVLLLTITF-PSSIKAVALDPAER-VVYIG 235 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCCccceEEEecCCc---eEEEEEeccceeeEEEec-CCcceeEEEccccc-EEEec
Confidence 1 1 1224677888899999888764 5888887655 688999988887776543 45788999999886 68899
Q ss_pred cCCCeEEEEeCCC----------------CceeeeccCccc--ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccccc
Q 007283 165 GEDFLVNFYEGPP----------------FKFKLSHRGHSN--FVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGEL 226 (609)
Q Consensus 165 ~~d~~i~~~~~~~----------------~~~~~~~~~h~~--~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~ 226 (609)
+.++.|.+.+... ......+.||.+ +|+|++++-||..|++|+.||.++|||+.+.+++.++
T Consensus 236 t~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 236 TEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred CCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHH
Confidence 9999887765321 123345788988 9999999999999999999999999999999999887
Q ss_pred CcCCCCccceEEEEECCCCCe
Q 007283 227 SPEDGHKGSVYAVSWSPDGKQ 247 (609)
Q Consensus 227 ~~~~~h~~~V~~l~~spd~~~ 247 (609)
. ...++|+.+.+.|-.+-
T Consensus 316 ~---~~kgpVtnL~i~~~~~~ 333 (476)
T KOG0646|consen 316 Q---TSKGPVTNLQINPLERG 333 (476)
T ss_pred h---hhccccceeEeeccccc
Confidence 4 25688999999765443
No 146
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=1.8e-16 Score=163.31 Aligned_cols=376 Identities=28% Similarity=0.443 Sum_probs=263.8
Q ss_pred ccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecc-cceeEEEE-CCCCC-EEEEEECCCCcceEE
Q 007283 52 IYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLS-GRIDDLQW-SPDGL-RIVACGDGKGKSLVR 128 (609)
Q Consensus 52 ~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~-~~v~~~~~-spdg~-~l~~~~~~~~~~~~~ 128 (609)
.+.+|...+..+.|.+++..++.++.|+.+.+|+..........+.... ..+..+.+ ++++. .++..+... ..++
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~~ 137 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLD--GTVK 137 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCC--ccEE
Confidence 4568899999999999999999999999999999887642223344433 36777777 88888 444433322 2456
Q ss_pred EEEcCC-CCeeEEEecCCccEEEEEEeeCCCeEEEEecC-CCeEEEEeCCCCceeeeccCcccceEEEEEcCCCC-EEEE
Q 007283 129 AFMWDS-GTNVGEFDGHSRRVLSCAFKPSRPFRIATCGE-DFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGS-KFIS 205 (609)
Q Consensus 129 ~~~~~~-~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~-d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s 205 (609)
+|+... ......+..|...|..++|+|++.. ++.++. |+.+++|+....+....+.+|...|.+++|+|++. .+++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 216 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKL-LASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIAS 216 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCCCE-EEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEE
Confidence 666665 5667788999999999999999984 666675 99999999988777788888999999999999998 5566
Q ss_pred EeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccce
Q 007283 206 VSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDM 285 (609)
Q Consensus 206 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 285 (609)
++.|+.+.+||...+..+.. ...+|...+ -..|+|++.++++++.|+.+++|+...... ..
T Consensus 217 ~~~d~~i~~wd~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~-------------- 277 (466)
T COG2319 217 GSSDGTIRLWDLSTGKLLRS--TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--LL-------------- 277 (466)
T ss_pred ecCCCcEEEEECCCCcEEee--ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--EE--------------
Confidence 68999999998886666552 123677665 448999998999999999999999763211 00
Q ss_pred EEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccc
Q 007283 286 LVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRK 365 (609)
Q Consensus 286 ~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~ 365 (609)
..+.+|...+.++.+.+ .+..+++++.|+.+++|+..........
T Consensus 278 --------------------------------~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~-- 322 (466)
T COG2319 278 --------------------------------RTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSL-- 322 (466)
T ss_pred --------------------------------EEEecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCceEEEe--
Confidence 00124566777776655 3456666888888999954321100000
Q ss_pred cccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEec
Q 007283 366 ENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTIN 445 (609)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (609)
. ...
T Consensus 323 ---------------------------~-------------------------------------------------~~~ 326 (466)
T COG2319 323 ---------------------------T-------------------------------------------------LKG 326 (466)
T ss_pred ---------------------------e-------------------------------------------------ecc
Confidence 0 000
Q ss_pred cCCceeEEEEcCCCCEEEEE-eCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEE-EeCCCeEEEEEccCC
Q 007283 446 LRFPVTASAIAPDGSEAIIG-SQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFAS-GDVNREAIVWDRVSR 523 (609)
Q Consensus 446 ~~~~~~~~~~sp~g~~l~~g-s~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s-~s~d~~v~iwd~~~~ 523 (609)
+...+..+.+.|++..++.+ ..|+.+++|++.... ...... ....+..+.+++ ...+.. +..++.+.+|+....
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 402 (466)
T COG2319 327 HEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK--PLKTLE-GHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTG 402 (466)
T ss_pred cCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc--eeEEec-CCceEEEEEECC-CCCEEEEecCCCceEEEecccC
Confidence 00124444553333455555 688999999987654 112222 222288999998 544444 689999999998766
Q ss_pred ceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCC
Q 007283 524 EVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDK 565 (609)
Q Consensus 524 ~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~ 565 (609)
...... ..+...+....+++++..+++++.++++++|+...
T Consensus 403 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 403 SLLRNL-DGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred eeeeec-cCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 543322 22227899999999999999999999999999764
No 147
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=4.1e-19 Score=178.86 Aligned_cols=243 Identities=17% Similarity=0.208 Sum_probs=193.8
Q ss_pred cCcCceeEEeecCCCCeEEEeC-CCEEEEEeCCCC-ccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCce
Q 007283 14 TERGRGILISGHPKSNSILYTN-GRSVIILDLSNP-LQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHV 91 (609)
Q Consensus 14 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~i~~~~~~-~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~ 91 (609)
.|.+--+.|.+.|+|+.|+.++ .+.|++|+.... .....+.-|...|.+++.. +.++++++.+++|.++.+...+.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCc
Confidence 4444457899999999887775 478899988665 4444454477778777664 44899999999999999887542
Q ss_pred eeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEE
Q 007283 92 LKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVN 171 (609)
Q Consensus 92 ~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~ 171 (609)
...+.-+.-++..++|+.+|+++++.+|+. .+++...+.......+.+|..+|.++.|+|.+.+ +|+..-||.++
T Consensus 89 -~~iL~Rftlp~r~~~v~g~g~~iaagsdD~---~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~f-LAvss~dG~v~ 163 (933)
T KOG1274|consen 89 -DTILARFTLPIRDLAVSGSGKMIAAGSDDT---AVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNF-LAVSSCDGKVQ 163 (933)
T ss_pred -cceeeeeeccceEEEEecCCcEEEeecCce---eEEEEeccccchheeecccCCceeeeeEcCCCCE-EEEEecCceEE
Confidence 111222344799999999999999988765 3566666777777889999999999999999985 99999999999
Q ss_pred EEeCCCCceeeeccC--------cccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECC
Q 007283 172 FYEGPPFKFKLSHRG--------HSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSP 243 (609)
Q Consensus 172 ~~~~~~~~~~~~~~~--------h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp 243 (609)
+|+...+.+...+.+ ....+..++|+|+|..|+..+.|+.|.+|+...++....+... .+...+..+.|+|
T Consensus 164 iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~-~~ss~~~~~~wsP 242 (933)
T KOG1274|consen 164 IWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDK-LSSSKFSDLQWSP 242 (933)
T ss_pred EEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccc-ccccceEEEEEcC
Confidence 999988776655433 1345678999999888999999999999999998887777643 3444599999999
Q ss_pred CCCeEEEEeCCCcEEEeeccc
Q 007283 244 DGKQVLTASADKSAKVWDISE 264 (609)
Q Consensus 244 d~~~l~s~s~d~~i~iwd~~~ 264 (609)
.|+|||+++.||.|.+||++.
T Consensus 243 nG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 243 NGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred CCcEEeeeccCCcEEEEeccc
Confidence 999999999999999999873
No 148
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=6.1e-19 Score=177.58 Aligned_cols=243 Identities=17% Similarity=0.287 Sum_probs=180.8
Q ss_pred CCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccc-cccceeEeeeeCCcEEEEeccceEEEEeccCCccc
Q 007283 322 GHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRK-ENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCG 400 (609)
Q Consensus 322 ~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~ 400 (609)
+|....+.+++.+ ++.++++|+.||.|++|.-+.......... ....+.+++.....+++++.++.+.++.+......
T Consensus 11 aht~G~t~i~~d~-~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~ 89 (933)
T KOG1274|consen 11 AHTGGLTLICYDP-DGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED 89 (933)
T ss_pred hccCceEEEEEcC-CCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCcc
Confidence 5777777777754 456999999999999996544321111111 34456666667778888888888888876544310
Q ss_pred cccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCe
Q 007283 401 YANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDT 480 (609)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~ 480 (609)
..+.. ...|+.+++++.+|+++|+||.|-.|++.++....
T Consensus 90 --------------------------------------~iL~R--ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s 129 (933)
T KOG1274|consen 90 --------------------------------------TILAR--FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS 129 (933)
T ss_pred --------------------------------------ceeee--eeccceEEEEecCCcEEEeecCceeEEEEeccccc
Confidence 01111 12578899999999999999999999999987654
Q ss_pred eeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEe--ee-----cCCCCceEEEEECCCCcEEEEEe
Q 007283 481 LTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLK--NM-----LYHTARINCLAWSPNNSMVATGS 553 (609)
Q Consensus 481 ~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~--~~-----~~h~~~i~~l~~s~d~~~l~s~s 553 (609)
. ..++.+|.++|.+|.|+|++.+||+.+.||.|++||+.++..... .+ ..-+..++.++|+|++..|+...
T Consensus 130 ~--~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~ 207 (933)
T KOG1274|consen 130 Q--EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP 207 (933)
T ss_pred h--heeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec
Confidence 3 578899999999999999999999999999999999887654211 00 11244578899999999899999
Q ss_pred CCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEcc
Q 007283 554 LDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRLT 607 (609)
Q Consensus 554 ~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~~ 607 (609)
.|++|++|+...-..........|+..+..++|| .+.+|++++-||-|.|||++
T Consensus 208 ~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 208 VDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred cCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence 9999999987642211111122344559999999 68999999999999999986
No 149
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.84 E-value=4.7e-19 Score=164.82 Aligned_cols=297 Identities=15% Similarity=0.185 Sum_probs=201.2
Q ss_pred ccCcccceEEEEEcCCCC--EEEEEeCCCcEEEEeCCCCc-cccccCcCCCCccceEEEEECCCC-CeEEEEeCCCcEEE
Q 007283 184 HRGHSNFVNCVRFSPDGS--KFISVSSDKKGIIYDGKTAD-KIGELSPEDGHKGSVYAVSWSPDG-KQVLTASADKSAKV 259 (609)
Q Consensus 184 ~~~h~~~v~~l~~s~dg~--~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~h~~~V~~l~~spd~-~~l~s~s~d~~i~i 259 (609)
.+-+.+.|++++|+|... ++|+|..-|.|-+||+.+.+ ....+.....|+++|.++.|+|.+ ..+++.|.||+||.
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL 261 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence 445678899999999854 67888889999999985322 222222335799999999999954 58899999999999
Q ss_pred eecccCCCCceEEEeccCCCCCccceEEEEEE--cCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCC
Q 007283 260 WDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW--QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDP 337 (609)
Q Consensus 260 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 337 (609)
-|++......+ +... .. ......+.+ ....++.++.-|...+|+.+........+.-|...|..+++++..+
T Consensus 262 ~D~~~~i~e~v---~s~~-~d--~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p 335 (498)
T KOG4328|consen 262 QDFEGNISEEV---LSLD-TD--NIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCP 335 (498)
T ss_pred eeecchhhHHH---hhcC-cc--ceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCc
Confidence 99864211111 1110 00 011112222 2446777888889999998876655556777999999999999889
Q ss_pred CEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEee
Q 007283 338 KVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVA 417 (609)
Q Consensus 338 ~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (609)
.+++|+|.|++.++||...-. . ..+
T Consensus 336 ~~laT~s~D~T~kIWD~R~l~-----~-K~s------------------------------------------------- 360 (498)
T KOG4328|consen 336 WFLATASLDQTAKIWDLRQLR-----G-KAS------------------------------------------------- 360 (498)
T ss_pred hheeecccCcceeeeehhhhc-----C-CCC-------------------------------------------------
Confidence 999999999999999863210 0 000
Q ss_pred ccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEec--CCeeeeeEEEecCCC---
Q 007283 418 LHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIR--GDTLTEEAVLEKHRG--- 492 (609)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~--~~~~~~~~~~~~h~~--- 492 (609)
..+..+.++..|.++.|||.+..+++-++|..|||||.. +.... ......|..
T Consensus 361 ---------------------p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~-p~~~I~Hn~~t~ 418 (498)
T KOG4328|consen 361 ---------------------PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDE-PLGTIPHNNRTG 418 (498)
T ss_pred ---------------------cceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCC-ccceeeccCccc
Confidence 012234455678999999999999999999999999973 01111 111112221
Q ss_pred -c--eEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEE-EECCCCc-EEEEEeCCCeEEEEEc
Q 007283 493 -A--VSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCL-AWSPNNS-MVATGSLDTCVIIYEI 563 (609)
Q Consensus 493 -~--i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l-~~s~d~~-~l~s~s~D~~v~vw~~ 563 (609)
. ..-..|.|+..++++|-.-..|-|+|-..++........-...|.++ .|+|-+. ++|-++.-|.|.||.-
T Consensus 419 RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 419 RWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred ccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEec
Confidence 1 22346999999999999999999999665543222111122356665 8899877 6666677788888853
No 150
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=1.4e-15 Score=156.73 Aligned_cols=371 Identities=26% Similarity=0.429 Sum_probs=260.2
Q ss_pred cCcCceeEEeecCCCCeEEEeC-CCEEEEEeCCCCc-cccccccCC-CCcEEEEE-CCCCC-EEEEEe-CCCcEEEEcCC
Q 007283 14 TERGRGILISGHPKSNSILYTN-GRSVIILDLSNPL-QVSIYGEHA-YPATVARF-SPNGE-WIASAD-VSGTVRIWGAH 87 (609)
Q Consensus 14 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~-~~~~~~~h~-~~v~~~~~-sp~g~-~las~~-~d~~i~vWd~~ 87 (609)
.+......+.+.+.+..++... ...+.+|+...+. ....+.++. ..+..+.+ ++++. +++..+ .|+.+++|+..
T Consensus 63 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 142 (466)
T COG2319 63 GHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLS 142 (466)
T ss_pred eccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEec
Confidence 3445556788888888777665 6899999998876 555565544 36777777 89998 555544 49999999997
Q ss_pred CCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCC
Q 007283 88 NDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGED 167 (609)
Q Consensus 88 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d 167 (609)
........+..|...|..++|+|+++.++..+. ....+++|.......+..+.+|...|.+++|+|++...+++++.|
T Consensus 143 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d 220 (466)
T COG2319 143 TPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS--LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSD 220 (466)
T ss_pred CCCeEEEEEecCcccEEEEEECCCCCEEEecCC--CCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCC
Confidence 622344567788999999999999997776642 223455666556677888889999999999999987556777999
Q ss_pred CeEEEEeCCCCceee-eccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc-ccccCcCCCCccceEEEEECCCC
Q 007283 168 FLVNFYEGPPFKFKL-SHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK-IGELSPEDGHKGSVYAVSWSPDG 245 (609)
Q Consensus 168 ~~i~~~~~~~~~~~~-~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~h~~~V~~l~~spd~ 245 (609)
+.+.+|+...+.... .+.+|.... ...|+|++..+++++.|+.+++|+...... ...+ .+|...|.++.|.|++
T Consensus 221 ~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~ 296 (466)
T COG2319 221 GTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL---SGHSSSVLSVAFSPDG 296 (466)
T ss_pred CcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE---ecCCccEEEEEECCCC
Confidence 999999877666666 578888875 448999998889999999999999876654 3222 3688899999999999
Q ss_pred CeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCC
Q 007283 246 KQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMK 325 (609)
Q Consensus 246 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~ 325 (609)
..+++++.|+.+++|+.... ....... ...|..
T Consensus 297 ~~~~~~~~d~~~~~~~~~~~---~~~~~~~--------------------------------------------~~~~~~ 329 (466)
T COG2319 297 KLLASGSSDGTVRLWDLETG---KLLSSLT--------------------------------------------LKGHEG 329 (466)
T ss_pred CEEEEeeCCCcEEEEEcCCC---ceEEEee--------------------------------------------ecccCC
Confidence 98888999988999976521 1111000 112444
Q ss_pred CeEEEEEecCCCCEEEEE-ecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccc
Q 007283 326 NVTALTVLNIDPKVILSS-SYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANS 404 (609)
Q Consensus 326 ~v~~~~~~~~~~~~~~t~-s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~ 404 (609)
.+..+.+ ..+...++.+ ..|+.+.+|+..... . . ..
T Consensus 330 ~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~--~--------~-------------------~~------------- 366 (466)
T COG2319 330 PVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGK--P--------L-------------------KT------------- 366 (466)
T ss_pred ceEEEEE-CCCCCEEEEeecCCCcEEeeecCCCc--e--------e-------------------EE-------------
Confidence 5556666 3321334444 677888887543211 0 0 00
Q ss_pred cccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEE-EeCCCcEEEEEecCCeeee
Q 007283 405 IDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAII-GSQDGKLRVYSIRGDTLTE 483 (609)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~-gs~dg~i~iw~~~~~~~~~ 483 (609)
......+..+.+++ ....+. +..++.+.+|+........
T Consensus 367 ---------------------------------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (466)
T COG2319 367 ---------------------------------------LEGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLR 406 (466)
T ss_pred ---------------------------------------ecCCceEEEEEECC-CCCEEEEecCCCceEEEecccCeeee
Confidence 00000033445555 333333 6889999999987655422
Q ss_pred eEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccC
Q 007283 484 EAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVS 522 (609)
Q Consensus 484 ~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~ 522 (609)
....+...+....+++++..+++++.+.++++|+...
T Consensus 407 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 407 --NLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred --eccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 2222227889999999999999999999999999765
No 151
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=3.7e-18 Score=151.49 Aligned_cols=279 Identities=18% Similarity=0.215 Sum_probs=190.8
Q ss_pred eeEEeecCCCCeEEEe-CCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEe
Q 007283 19 GILISGHPKSNSILYT-NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFR 97 (609)
Q Consensus 19 ~~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~ 97 (609)
...+.|++-|.+|+.+ +.+.++|||+.+...-+.+.+|--+|++++|||||++|+|+|.|-.|++||+-.+.++. +++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~-rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLK-RIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCcee-EEE
Confidence 3488999999999765 56799999999988888899999999999999999999999999999999998877543 344
Q ss_pred ecccceeEEEECCCCCEEEEEE-CCCCcceEEEEEcCCCCeeEEEe----cCCccEE-EEEEeeCCCeEEEEecCCCeEE
Q 007283 98 VLSGRIDDLQWSPDGLRIVACG-DGKGKSLVRAFMWDSGTNVGEFD----GHSRRVL-SCAFKPSRPFRIATCGEDFLVN 171 (609)
Q Consensus 98 ~~~~~v~~~~~spdg~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~h~~~v~-~~~~~p~~~~~i~t~~~d~~i~ 171 (609)
++.+|..+.|+|-.+..+.+. -... -.+...+..... .+. +..+.+. +..|++.|.+ |.+|...|.+.
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~s---p~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~y-IitGtsKGkll 178 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEES---PVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKY-IITGTSKGKLL 178 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCC---cEEEEecCCcee-eccCCCccccccccccccccCCCCE-EEEecCcceEE
Confidence 567899999999544333222 1111 112222221111 011 1111111 2247777775 89999999999
Q ss_pred EEeCCCCceeeeccCcc-cceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccc-cCcCCCCc-------cceEEEEEC
Q 007283 172 FYEGPPFKFKLSHRGHS-NFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGE-LSPEDGHK-------GSVYAVSWS 242 (609)
Q Consensus 172 ~~~~~~~~~~~~~~~h~-~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~h~-------~~V~~l~~s 242 (609)
+++.++.+++..++--. ..|.++.|+..|++|+.-+.|..|+.|+.+.-..... ..+...|+ -.=.+++|+
T Consensus 179 v~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs 258 (405)
T KOG1273|consen 179 VYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFS 258 (405)
T ss_pred EEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeec
Confidence 99999999888876555 7899999999999999999999999998652111000 00000111 123578999
Q ss_pred CCCCeEEEEeC-CCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeE-EEEEcCCcEEEEeCC
Q 007283 243 PDGKQVLTASA-DKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFL-VIVSLGGTISIFSAN 311 (609)
Q Consensus 243 pd~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~i~~~~~~ 311 (609)
.+|.|++.++. ...++||.-. .|.+++.+..... +......|.+-.. +..-..|++++|...
T Consensus 259 ~dgeYv~a~s~~aHaLYIWE~~---~GsLVKILhG~kg----E~l~DV~whp~rp~i~si~sg~v~iw~~~ 322 (405)
T KOG1273|consen 259 GDGEYVCAGSARAHALYIWEKS---IGSLVKILHGTKG----EELLDVNWHPVRPIIASIASGVVYIWAVV 322 (405)
T ss_pred CCccEEEeccccceeEEEEecC---CcceeeeecCCch----hheeecccccceeeeeeccCCceEEEEee
Confidence 99999988764 4679999865 4666666643321 1223334443322 222267889999754
No 152
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.83 E-value=8.6e-19 Score=160.81 Aligned_cols=119 Identities=29% Similarity=0.491 Sum_probs=96.5
Q ss_pred CccEEEEEEeeCCCeEEEEecCCCeEEEEeCC---CC------ceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 007283 145 SRRVLSCAFKPSRPFRIATCGEDFLVNFYEGP---PF------KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIY 215 (609)
Q Consensus 145 ~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~---~~------~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iw 215 (609)
..+|.++.|+++...+++|||.|..|++|-.. +. +....+.+|.+.|+++.|+|+|..||+|+++|.+.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 35789999999887679999999999999532 22 2334578899999999999999999999999999999
Q ss_pred eCC--------C-----CccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283 216 DGK--------T-----ADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS 263 (609)
Q Consensus 216 d~~--------~-----~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~ 263 (609)
-.. + .+.........+|...|+.++|+||+.++++++.|..+++||+.
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~ 153 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH 153 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEec
Confidence 654 2 11111112235799999999999999999999999999999986
No 153
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=2e-18 Score=160.90 Aligned_cols=287 Identities=17% Similarity=0.241 Sum_probs=192.7
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCcEEEEeC--CCCccccccCcCCCCccceEEEEECCCCC-eEEEEeCCCcEEEeeccc
Q 007283 188 SNFVNCVRFSPDGSKFISVSSDKKGIIYDG--KTADKIGELSPEDGHKGSVYAVSWSPDGK-QVLTASADKSAKVWDISE 264 (609)
Q Consensus 188 ~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~--~~~~~~~~~~~~~~h~~~V~~l~~spd~~-~l~s~s~d~~i~iwd~~~ 264 (609)
.+.|+++.|+|....|++|+.|++++||.+ +....+..+.. -..+|.+++|+|+|. .+++++....++.||+..
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l---~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL---EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeee---ccCccceeeecCCCceEEEecccceEEEEeeccc
Confidence 357999999999999999999999999964 34444444421 246799999999999 899999999999999863
Q ss_pred CCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCC-CCeEEEEEecCCCCEEEEE
Q 007283 265 DNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHM-KNVTALTVLNIDPKVILSS 343 (609)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~t~ 343 (609)
.+..+...+.+ +. +.+-...++ .++++|+..
T Consensus 290 ---ak~~k~~~~~g--------------------------------------------~e~~~~e~FeVS-hd~~fia~~ 321 (514)
T KOG2055|consen 290 ---AKVTKLKPPYG--------------------------------------------VEEKSMERFEVS-HDSNFIAIA 321 (514)
T ss_pred ---cccccccCCCC--------------------------------------------cccchhheeEec-CCCCeEEEc
Confidence 22222111110 10 001111111 123467777
Q ss_pred ecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcE
Q 007283 344 SYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPEL 423 (609)
Q Consensus 344 s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (609)
+..|-|.+-...++
T Consensus 322 G~~G~I~lLhakT~------------------------------------------------------------------ 335 (514)
T KOG2055|consen 322 GNNGHIHLLHAKTK------------------------------------------------------------------ 335 (514)
T ss_pred ccCceEEeehhhhh------------------------------------------------------------------
Confidence 76666654421110
Q ss_pred EEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCC
Q 007283 424 VLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDV 503 (609)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~ 503 (609)
+.+..+.....+..++|+.|++.+++.+.+|.|.+||+....+....+-++-. .=++++.|+++
T Consensus 336 ---------------eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v-~gts~~~S~ng 399 (514)
T KOG2055|consen 336 ---------------ELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV-HGTSLCISLNG 399 (514)
T ss_pred ---------------hhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc-ceeeeeecCCC
Confidence 11111112234677889999999999999999999999877554333322211 23567788999
Q ss_pred CEEEEEeCCCeEEEEEccCCc-----eEEeeecCCCCceEEEEECCCCcEEEEEe--CCCeEEEEEcCCCCCc-ceeEec
Q 007283 504 SMFASGDVNREAIVWDRVSRE-----VKLKNMLYHTARINCLAWSPNNSMVATGS--LDTCVIIYEIDKPASS-RMTIKG 575 (609)
Q Consensus 504 ~~l~s~s~d~~v~iwd~~~~~-----~~~~~~~~h~~~i~~l~~s~d~~~l~s~s--~D~~v~vw~~~~~~~~-~~~~~~ 575 (609)
.+||+||..|-|-|||..+-. .+++.+..-...|+.++|+||.+.||.+| .+..+++=.++.-... -.....
T Consensus 400 ~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n 479 (514)
T KOG2055|consen 400 SYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSN 479 (514)
T ss_pred ceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCC
Confidence 999999999999999954321 12333444566899999999999998776 4567888777542100 011123
Q ss_pred cccCCeEEEEEcC-CCeEEEEeCCCcEEEEEcc
Q 007283 576 AHLGGVYGLAFTD-EHSVVSSGEDACVRVWRLT 607 (609)
Q Consensus 576 ~h~~~v~~~~~s~-~~~l~s~s~D~~i~~W~~~ 607 (609)
...+.|+|++||+ +.+|+-|-.+|.+.+|.|.
T Consensus 480 ~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 480 TKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 4556799999995 7788889999999999874
No 154
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.83 E-value=3.9e-19 Score=166.88 Aligned_cols=277 Identities=17% Similarity=0.222 Sum_probs=202.3
Q ss_pred cCceeEEeecCCCCeEEEeCC-CEEEEEeCCCCcc---cccccc--CCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCC
Q 007283 16 RGRGILISGHPKSNSILYTNG-RSVIILDLSNPLQ---VSIYGE--HAYPATVARFSPNGEWIASADVSGTVRIWGAHND 89 (609)
Q Consensus 16 ~~~~~~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~---~~~~~~--h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~ 89 (609)
...+++++.+..-. -||+.| +.|.|||+..+.- +..+.- -..-|..+.++|||+.|++|+.-.++-|||+...
T Consensus 419 GEvVcAvtIS~~tr-hVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAap 497 (705)
T KOG0639|consen 419 GEVVCAVTISNPTR-HVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAP 497 (705)
T ss_pred CcEEEEEEecCCcc-eeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCC
Confidence 44556777765544 556655 7999999976431 222221 2335889999999999999999999999999865
Q ss_pred c-eeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCC
Q 007283 90 H-VLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDF 168 (609)
Q Consensus 90 ~-~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~ 168 (609)
. .++.+++...-.+++++.|||.+..+++..+. .+++|+......+..|.||++.+.++.++++|. .|=|||-|.
T Consensus 498 TprikaeltssapaCyALa~spDakvcFsccsdG---nI~vwDLhnq~~VrqfqGhtDGascIdis~dGt-klWTGGlDn 573 (705)
T KOG0639|consen 498 TPRIKAELTSSAPACYALAISPDAKVCFSCCSDG---NIAVWDLHNQTLVRQFQGHTDGASCIDISKDGT-KLWTGGLDN 573 (705)
T ss_pred CcchhhhcCCcchhhhhhhcCCccceeeeeccCC---cEEEEEcccceeeecccCCCCCceeEEecCCCc-eeecCCCcc
Confidence 4 34455555556789999999999888765332 477888888888999999999999999999997 599999999
Q ss_pred eEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeE
Q 007283 169 LVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQV 248 (609)
Q Consensus 169 ~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 248 (609)
+++.||.+.++....+ .-..+|.++.++|++.+++.|=.++.+-+......++ ..+ .-|.+.|.++.|.+-|+++
T Consensus 574 tvRcWDlregrqlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-yql---hlheScVLSlKFa~cGkwf 648 (705)
T KOG0639|consen 574 TVRCWDLREGRQLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-YQL---HLHESCVLSLKFAYCGKWF 648 (705)
T ss_pred ceeehhhhhhhhhhhh-hhhhhheecccCCCccceeeecccCcEEEEecCCccc-eee---cccccEEEEEEecccCcee
Confidence 9999998766443222 1246799999999999999999999988876554433 222 2588999999999999999
Q ss_pred EEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEe
Q 007283 249 LTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFS 309 (609)
Q Consensus 249 ~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~ 309 (609)
++.+.|.-+..|...- +..+ +...+. .....+.+..++.++++++.+....+|.
T Consensus 649 vStGkDnlLnawrtPy---Gasi--FqskE~--SsVlsCDIS~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 649 VSTGKDNLLNAWRTPY---GASI--FQSKES--SSVLSCDISFDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred eecCchhhhhhccCcc---ccce--eecccc--CcceeeeeccCceEEEecCCCcceEEEE
Confidence 9999999999997642 2111 111111 1112222344577888888876666664
No 155
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=6.7e-19 Score=165.17 Aligned_cols=287 Identities=15% Similarity=0.172 Sum_probs=201.2
Q ss_pred EEEEEcCCCCeeEEEecCCc--cEEEEEEeeCCCeEEEEecCCCeEEEEe--CCCCceeeeccCcccceEEEEEcCCCCE
Q 007283 127 VRAFMWDSGTNVGEFDGHSR--RVLSCAFKPSRPFRIATCGEDFLVNFYE--GPPFKFKLSHRGHSNFVNCVRFSPDGSK 202 (609)
Q Consensus 127 ~~~~~~~~~~~~~~~~~h~~--~v~~~~~~p~~~~~i~t~~~d~~i~~~~--~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 202 (609)
+++|+...-.....+..|+. .+.++.|......+.++-+.|..+.+|. .++++....-+...+.-.|++......+
T Consensus 14 ~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y 93 (673)
T KOG4378|consen 14 TKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLY 93 (673)
T ss_pred eEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhccee
Confidence 45666554333333444432 3778888776655667778899999995 3333332221222234566666666689
Q ss_pred EEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCc
Q 007283 203 FISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGV 282 (609)
Q Consensus 203 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 282 (609)
+++|+..+.|+|||.+..-+...+ ++|...|+++.+.-...|||+++..|.|.+-.+..+ ....++... .+..
T Consensus 94 ~~sgG~~~~Vkiwdl~~kl~hr~l---kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~---~~tt~f~~~-sgqs 166 (673)
T KOG4378|consen 94 EISGGQSGCVKIWDLRAKLIHRFL---KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTK---QKTTTFTID-SGQS 166 (673)
T ss_pred eeccCcCceeeehhhHHHHHhhhc---cCCcceeEEEEecCCcceeEEeccCCcEEEEecccC---ccccceecC-CCCe
Confidence 999999999999999854433333 589999999999999999999999999999987642 222222221 1111
Q ss_pred cceEEEEE-EcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccce
Q 007283 283 DDMLVGCL-WQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGK 361 (609)
Q Consensus 283 ~~~~~~~~-~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~ 361 (609)
.. ..... +...+|.+++.+|.+.+|+.+.......-...|......++|++.++.++++.+.|..|.++|.....
T Consensus 167 vR-ll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~--- 242 (673)
T KOG4378|consen 167 VR-LLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA--- 242 (673)
T ss_pred EE-EeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc---
Confidence 10 11111 22446788899999999998876555555678999999999999888999999999999988653210
Q ss_pred eccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeee
Q 007283 362 LQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVV 441 (609)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (609)
..
T Consensus 243 ------------------------------------------------------------------------------s~ 244 (673)
T KOG4378|consen 243 ------------------------------------------------------------------------------ST 244 (673)
T ss_pred ------------------------------------------------------------------------------cc
Confidence 00
Q ss_pred EEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCC
Q 007283 442 STINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDV 503 (609)
Q Consensus 442 ~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~ 503 (609)
..+....|.+.++|+|+|.+|++|+..|.|..||++... ....++..|...|++|+|-|.-
T Consensus 245 ~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k-~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 245 DRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK-APVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ceeeecCCcceeeecCCceEEEeecCCceEEEEecccCC-CCceEeeecccceeEEEeeecc
Confidence 111223578899999999999999999999999997543 4567889999999999996653
No 156
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.82 E-value=3.6e-18 Score=159.07 Aligned_cols=300 Identities=17% Similarity=0.192 Sum_probs=193.1
Q ss_pred CCccccccccCCCCcEEEEECCCC--CEEEEEeCCCcEEEEcCCCC---ceeeEEEeecccceeEEEECCC--CCEEEEE
Q 007283 46 NPLQVSIYGEHAYPATVARFSPNG--EWIASADVSGTVRIWGAHND---HVLKKEFRVLSGRIDDLQWSPD--GLRIVAC 118 (609)
Q Consensus 46 ~~~~~~~~~~h~~~v~~~~~sp~g--~~las~~~d~~i~vWd~~~~---~~~~~~~~~~~~~v~~~~~spd--g~~l~~~ 118 (609)
+-.+...+.-|.+.|++++|+|.- +++|+|+.-|+|-+|++.++ ..-...+..|+++|..+.|+|- .+.+.+.
T Consensus 175 ~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS 254 (498)
T KOG4328|consen 175 DYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS 254 (498)
T ss_pred cceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeec
Confidence 333444566788999999999965 58889999999999999422 2222457789999999999995 3444444
Q ss_pred ECCCCcceEEEEEcCCCC--eeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCce-eeeccCcccceEEEE
Q 007283 119 GDGKGKSLVRAFMWDSGT--NVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKF-KLSHRGHSNFVNCVR 195 (609)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~-~~~~~~h~~~v~~l~ 195 (609)
-|| .+|+.+++.+. .+...+.....+.+++|+...+. ++.+..-+...+||..+.+. ...+.-|...|.+++
T Consensus 255 yDG----tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~-vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~ 329 (498)
T KOG4328|consen 255 YDG----TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRS-VLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVA 329 (498)
T ss_pred cCc----eeeeeeecchhhHHHhhcCccceeeeeccccCCCcc-EEEeecccceEEEEeecCCccchhhhhhhcccceee
Confidence 444 47777777543 23334434555778888888776 44455555888999776554 334566888999999
Q ss_pred EcCCCC-EEEEEeCCCcEEEEeCCCCccccc-cCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeeccc-CCCCceEE
Q 007283 196 FSPDGS-KFISVSSDKKGIIYDGKTADKIGE-LSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE-DNHGKLKK 272 (609)
Q Consensus 196 ~s~dg~-~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~-~~~~~~~~ 272 (609)
++|-.. +|||++.|++.+|||.+.-..... +...-.|...|.++.|||++-.|++-+.|.+||+||.+- ...-....
T Consensus 330 ~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~ 409 (498)
T KOG4328|consen 330 LNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLG 409 (498)
T ss_pred cCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccc
Confidence 999865 789999999999999775332221 111236999999999999988899999999999999731 00011111
Q ss_pred EeccCCC--CCccceEEEEEEcC--CeEEEEEcCCcEEEEeCCCCCCCceeeeCCC-CCeEEE-EEecCCCCEEEEEecC
Q 007283 273 TLTPSGS--GGVDDMLVGCLWQN--DFLVIVSLGGTISIFSANDLEKSPLQLSGHM-KNVTAL-TVLNIDPKVILSSSYD 346 (609)
Q Consensus 273 ~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~-~~v~~~-~~~~~~~~~~~t~s~d 346 (609)
++.+... .+.. .+-+.|.+ .+++++..-..|-+++.+... ...++.+-. ..|.++ .+++....+++.++..
T Consensus 410 ~I~Hn~~t~RwlT--~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q-~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~ 486 (498)
T KOG4328|consen 410 TIPHNNRTGRWLT--PFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ-MVCELHDPESSTIPSVNEFHPMRDTLAAGGNSS 486 (498)
T ss_pred eeeccCccccccc--chhheeCCCccEEEEeccCcceeEEcCCCCE-EeeeccCccccccccceeecccccceeccCCcc
Confidence 1111110 1111 12234543 466667667778888644221 112222211 134443 3445443466666678
Q ss_pred CcEEEEe
Q 007283 347 GLIVKWI 353 (609)
Q Consensus 347 g~i~~W~ 353 (609)
|.|.+|.
T Consensus 487 Gki~vft 493 (498)
T KOG4328|consen 487 GKIYVFT 493 (498)
T ss_pred ceEEEEe
Confidence 8888883
No 157
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.81 E-value=2.5e-18 Score=166.77 Aligned_cols=276 Identities=19% Similarity=0.326 Sum_probs=193.4
Q ss_pred cEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccccc
Q 007283 147 RVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGEL 226 (609)
Q Consensus 147 ~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~ 226 (609)
-|..++|.|||...++.++ ..+.+||...+....++++|++.|+|++|+.||+.+|+|+.|+.+++|..+-...+ .+
T Consensus 14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-kY 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-KY 90 (1081)
T ss_pred chheeEECCCCceEEEecC--CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-ee
Confidence 6788999999987555443 35788999889999999999999999999999999999999999999986543322 22
Q ss_pred CcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcC--CeEEEEEcCCc
Q 007283 227 SPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQN--DFLVIVSLGGT 304 (609)
Q Consensus 227 ~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~ 304 (609)
.|...|.|+.|.|-...|++++- ...-+|....++-.+. .....+.+|.|.+ .+++.+-.+|+
T Consensus 91 ----SH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~K~----------kss~R~~~CsWtnDGqylalG~~nGT 155 (1081)
T KOG1538|consen 91 ----SHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVSKH----------KSSSRIICCSWTNDGQYLALGMFNGT 155 (1081)
T ss_pred ----ccCCeeeEeecCchHHHhhhcch-hhccccChhhhhHHhh----------hhheeEEEeeecCCCcEEEEeccCce
Confidence 59999999999999999999975 3567887653211111 1123467788974 48888999999
Q ss_pred EEEEeCCCCCCCc-eeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEE
Q 007283 305 ISIFSANDLEKSP-LQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTS 383 (609)
Q Consensus 305 i~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (609)
|.+-+-...++.. ..-.|..++|.++++++..+ -+.+-. +...
T Consensus 156 IsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg-----~G~~di-------------------------------~aV~ 199 (1081)
T KOG1538|consen 156 ISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSG-----EGRNDI-------------------------------LAVA 199 (1081)
T ss_pred EEeecCCCCcceEEeCCCCCCCCceEEEecCCCC-----CCccce-------------------------------EEEE
Confidence 9998654333222 22345777888888875422 001111 1111
Q ss_pred eccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEE
Q 007283 384 GFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAI 463 (609)
Q Consensus 384 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~ 463 (609)
.+..++-.+.+.+ .......+..+...|+...|+|.++.
T Consensus 200 DW~qTLSFy~LsG-----------------------------------------~~Igk~r~L~FdP~CisYf~NGEy~L 238 (1081)
T KOG1538|consen 200 DWGQTLSFYQLSG-----------------------------------------KQIGKDRALNFDPCCISYFTNGEYIL 238 (1081)
T ss_pred eccceeEEEEecc-----------------------------------------eeecccccCCCCchhheeccCCcEEE
Confidence 1111111111110 00111223346677888999999999
Q ss_pred EEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEc
Q 007283 464 IGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDR 520 (609)
Q Consensus 464 ~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~ 520 (609)
.|+.|+.+++|.-++-. ..++......|+.|+..|++++++.|+.||++-.|++
T Consensus 239 iGGsdk~L~~fTR~Gvr---LGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 239 LGGSDKQLSLFTRDGVR---LGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred EccCCCceEEEeecCeE---EeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 99999999999754322 2445556778999999999999999999999998874
No 158
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.81 E-value=3.5e-18 Score=155.22 Aligned_cols=265 Identities=20% Similarity=0.273 Sum_probs=179.1
Q ss_pred CCccceEEEEECCCC--CeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEE
Q 007283 231 GHKGSVYAVSWSPDG--KQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIF 308 (609)
Q Consensus 231 ~h~~~V~~l~~spd~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ 308 (609)
+|.+.++.+.-++-+ .+.++=+..|.|+||++.. ..+.+... .+.+-
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~-----~l~~l~~~----------------~~~~~---------- 197 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAP-----HLNALSEP----------------GLEVK---------- 197 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchh-----hhhhhcCc----------------ccccc----------
Confidence 577788888877765 4555557789999999852 11111100 00000
Q ss_pred eCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccce
Q 007283 309 SANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNK 388 (609)
Q Consensus 309 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 388 (609)
.....+...+.+|...-++++|++.....++||..-+.|++|...++.
T Consensus 198 --~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~------------------------------ 245 (440)
T KOG0302|consen 198 --DSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGS------------------------------ 245 (440)
T ss_pred --ccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCc------------------------------
Confidence 011234566788999999999987554567788777888888443210
Q ss_pred EEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCC-CEEEEEeC
Q 007283 389 IWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDG-SEAIIGSQ 467 (609)
Q Consensus 389 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g-~~l~~gs~ 467 (609)
|.+.. .....+...|..+.+||.. ..||+||-
T Consensus 246 ---W~vd~--------------------------------------------~Pf~gH~~SVEDLqWSptE~~vfaScS~ 278 (440)
T KOG0302|consen 246 ---WKVDQ--------------------------------------------RPFTGHTKSVEDLQWSPTEDGVFASCSC 278 (440)
T ss_pred ---eeecC--------------------------------------------ccccccccchhhhccCCccCceEEeeec
Confidence 00000 0000112335667788844 56899999
Q ss_pred CCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCc--eEEeeecCCCCceEEEEECCC
Q 007283 468 DGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSRE--VKLKNMLYHTARINCLAWSPN 545 (609)
Q Consensus 468 dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~--~~~~~~~~h~~~i~~l~~s~d 545 (609)
||+|+|||++.+....-...++|.+.|+.|+|+.+-.+||+|+.||+++|||++.-+ ..+..++.|..+|+++.|+|.
T Consensus 279 DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~ 358 (440)
T KOG0302|consen 279 DGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPH 358 (440)
T ss_pred CceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccc
Confidence 999999999887433333448999999999999999999999999999999986532 345567889999999999995
Q ss_pred -CcEEEEEeCCCeEEEEEcCCCCC----------cc----eeEeccccC--CeEEEEEcC--CCeEEEEeCCCcEEEEE
Q 007283 546 -NSMVATGSLDTCVIIYEIDKPAS----------SR----MTIKGAHLG--GVYGLAFTD--EHSVVSSGEDACVRVWR 605 (609)
Q Consensus 546 -~~~l~s~s~D~~v~vw~~~~~~~----------~~----~~~~~~h~~--~v~~~~~s~--~~~l~s~s~D~~i~~W~ 605 (609)
...|++++.|.+|.+||+..... .+ .+++--|.+ -|..|.|.. ..+|+|.+-||--.+..
T Consensus 359 e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfkt 437 (440)
T KOG0302|consen 359 EDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFKT 437 (440)
T ss_pred cCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEEe
Confidence 46788899999999999864321 00 011223544 377888883 46899999998644433
No 159
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.81 E-value=8.6e-18 Score=153.62 Aligned_cols=214 Identities=21% Similarity=0.320 Sum_probs=160.7
Q ss_pred ccccccCCCCcEEEEECC-CCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEE
Q 007283 50 VSIYGEHAYPATVARFSP-NGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVR 128 (609)
Q Consensus 50 ~~~~~~h~~~v~~~~~sp-~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~ 128 (609)
.-...||+++|-.++|+| +...|||||.|.+|.||++..+. +.+.+ .
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~-l~~~l---t---------------------------- 121 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENG-LTRDL---T---------------------------- 121 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcc-cccCc---c----------------------------
Confidence 345689999999999999 66789999999999999987653 21111 1
Q ss_pred EEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeC
Q 007283 129 AFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSS 208 (609)
Q Consensus 129 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~ 208 (609)
..+..+.+|+.+|-.++|||.-..+++++|.|.++.+|+..+++....+. |.+.|.++.|+.||++|++.+.
T Consensus 122 -------epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~Ttck 193 (472)
T KOG0303|consen 122 -------EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCK 193 (472)
T ss_pred -------cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecc
Confidence 23346789999999999999998899999999999999999998887776 9999999999999999999999
Q ss_pred CCcEEEEeCCCCccccccCcCCCCcc-ceEEEEECCCCCeEEEEe---CCCcEEEeecccCCCCceEEEeccCCCCCccc
Q 007283 209 DKKGIIYDGKTADKIGELSPEDGHKG-SVYAVSWSPDGKQVLTAS---ADKSAKVWDISEDNHGKLKKTLTPSGSGGVDD 284 (609)
Q Consensus 209 d~~i~iwd~~~~~~~~~~~~~~~h~~-~V~~l~~spd~~~l~s~s---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 284 (609)
|+.|+|||.++++.+..-. +|.+ .-..+.|-.+|..+-+|- .++++-+||...-.......++... ..
T Consensus 194 DKkvRv~dpr~~~~v~e~~---~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS-----nG 265 (472)
T KOG0303|consen 194 DKKVRVIDPRRGTVVSEGV---AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTS-----NG 265 (472)
T ss_pred cceeEEEcCCCCcEeeecc---cccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccC-----Cc
Confidence 9999999999998776542 4554 234566778888554442 3688999997543222222333211 11
Q ss_pred eEEEEEEcCC---eEEEEEcCCcEEEEeCCC
Q 007283 285 MLVGCLWQND---FLVIVSLGGTISIFSAND 312 (609)
Q Consensus 285 ~~~~~~~~~~---~~~~~~~~g~i~~~~~~~ 312 (609)
+.-.+++.+ .++++-.|++|+.|.+..
T Consensus 266 -vl~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 266 -VLLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred -eEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 222334432 456778899999998754
No 160
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.2e-17 Score=148.35 Aligned_cols=282 Identities=16% Similarity=0.263 Sum_probs=186.7
Q ss_pred cEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeE
Q 007283 60 ATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVG 139 (609)
Q Consensus 60 v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 139 (609)
..|+.|++.|.+||.|..||.|-|||..+-. ..+.+..|-.+|.+++||+||+.|++.+.+. -+..|+...+.+++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-iar~lsaH~~pi~sl~WS~dgr~LltsS~D~---si~lwDl~~gs~l~ 101 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-IARMLSAHVRPITSLCWSRDGRKLLTSSRDW---SIKLWDLLKGSPLK 101 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-hhhhhhccccceeEEEecCCCCEeeeecCCc---eeEEEeccCCCcee
Confidence 7899999999999999999999999999865 3456888999999999999999999987443 35677777888777
Q ss_pred EEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCcee-ee--ccCc-ccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 007283 140 EFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFK-LS--HRGH-SNFVNCVRFSPDGSKFISVSSDKKGIIY 215 (609)
Q Consensus 140 ~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~-~~--~~~h-~~~v~~l~~s~dg~~l~s~~~d~~i~iw 215 (609)
.+. -..+|+.+.|+|-....++++--+..-.+-+..+.+.. .. ..+. .....+..|.+.|+++++|...|.+.++
T Consensus 102 rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~ 180 (405)
T KOG1273|consen 102 RIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVY 180 (405)
T ss_pred EEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEE
Confidence 654 35689999999977655555433322222222111111 11 1111 1223445699999999999999999999
Q ss_pred eCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccC----CCCceE--EEeccCCCCCccce-EEE
Q 007283 216 DGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISED----NHGKLK--KTLTPSGSGGVDDM-LVG 288 (609)
Q Consensus 216 d~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~----~~~~~~--~~~~~~~~~~~~~~-~~~ 288 (609)
+..+-+++..+... ....|.++.|+..|+.|+.-+.|+.||.|+++.- +.+..- +.++ .-+... --.
T Consensus 181 ~a~t~e~vas~rit--s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~q----DvVNk~~Wk~ 254 (405)
T KOG1273|consen 181 DAETLECVASFRIT--SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQ----DVVNKLQWKK 254 (405)
T ss_pred ecchheeeeeeeec--hheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHH----HHHhhhhhhh
Confidence 99999888766532 2367899999999999999999999999997621 111110 0000 000000 012
Q ss_pred EEEc--CCeEEEEEc-CCcEEEEeCCCCCCCceeeeCCC-CCeEEEEEecCCCCEEEEEecCCcEEEEecC
Q 007283 289 CLWQ--NDFLVIVSL-GGTISIFSANDLEKSPLQLSGHM-KNVTALTVLNIDPKVILSSSYDGLIVKWIQG 355 (609)
Q Consensus 289 ~~~~--~~~~~~~~~-~g~i~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~ 355 (609)
|+++ +.+++.++. ...+++|.-.. ....+.+.|.. .....+.+++-. ..+++- ..|.+++|.+.
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~-GsLVKILhG~kgE~l~DV~whp~r-p~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSI-GSLVKILHGTKGEELLDVNWHPVR-PIIASI-ASGVVYIWAVV 322 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCC-cceeeeecCCchhheeecccccce-eeeeec-cCCceEEEEee
Confidence 3333 334444432 34578886432 33445677766 455666666542 234444 88999999653
No 161
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=5.8e-20 Score=179.93 Aligned_cols=204 Identities=17% Similarity=0.317 Sum_probs=179.6
Q ss_pred ccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEE
Q 007283 52 IYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFM 131 (609)
Q Consensus 52 ~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~ 131 (609)
.+..|...|.|+..-..++.+++|+.|-.+-||.+.....+ ..+.+|..+|.++.|+++...|++.... ..+++|+
T Consensus 23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i-~S~~~hespIeSl~f~~~E~Llaagsas---gtiK~wD 98 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAI-TSLTGHESPIESLTFDTSERLLAAGSAS---GTIKVWD 98 (825)
T ss_pred hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchh-heeeccCCcceeeecCcchhhhcccccC---Cceeeee
Confidence 45668888999998888999999999999999987543322 2478899999999999998666654432 3588888
Q ss_pred cCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCc
Q 007283 132 WDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKK 211 (609)
Q Consensus 132 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~ 211 (609)
.+.++.+.++.+|...+.+++|+|-+.+ +|.|+.|.-+.+||....-+...+.+|...+.++.|+|+|++++.+++|.+
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P~~~~-~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~t 177 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHPYGEF-FASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNT 177 (825)
T ss_pred hhhhhhhhhhhccccCcceeeeccceEE-eccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcce
Confidence 8888888899999999999999999986 699999999999999988888999999999999999999999999999999
Q ss_pred EEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283 212 GIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS 263 (609)
Q Consensus 212 i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~ 263 (609)
++|||...|+.+..+ .+|.+.|.++.|+|..-++++||.|+++++||++
T Consensus 178 vki~d~~agk~~~ef---~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 178 VKIWDLTAGKLSKEF---KSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred eeeeccccccccccc---ccccccccccccCchhhhhccCCCCceeeeeccc
Confidence 999999999887766 4799999999999999999999999999999986
No 162
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=7.9e-17 Score=152.84 Aligned_cols=206 Identities=22% Similarity=0.395 Sum_probs=158.4
Q ss_pred eEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEEC
Q 007283 30 SILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWS 109 (609)
Q Consensus 30 ~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~s 109 (609)
.+++.++++..|.+.. ++.......|.+-|.|-+|+|||.-|+|++.||.|++|.-.. -++..+.....+|++++|.
T Consensus 78 ~~i~s~DGkf~il~k~-~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG--MLRStl~Q~~~~v~c~~W~ 154 (737)
T KOG1524|consen 78 LLICSNDGRFVILNKS-ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG--MLRSTVVQNEESIRCARWA 154 (737)
T ss_pred EEEEcCCceEEEeccc-chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc--hHHHHHhhcCceeEEEEEC
Confidence 3455567777777653 344455788999999999999999999999999999997532 2333444566789999999
Q ss_pred CCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCccc
Q 007283 110 PDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSN 189 (609)
Q Consensus 110 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~ 189 (609)
|+...++.|..+. +.+..+..+..+..++.|.+-|.+++|+|... +|++||.|...++||.. +...++...|..
T Consensus 155 p~S~~vl~c~g~h----~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey 228 (737)
T KOG1524|consen 155 PNSNSIVFCQGGH----ISIKPLAANSKIIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFKIWDAQ-GANLFTSAAEEY 228 (737)
T ss_pred CCCCceEEecCCe----EEEeecccccceeEEeccCcEEEEeecCcccc-ceeecCCceeEEeeccc-CcccccCChhcc
Confidence 9988877775432 34555566666677899999999999999987 59999999999999964 334455567999
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEe
Q 007283 190 FVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVW 260 (609)
Q Consensus 190 ~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iw 260 (609)
+|++++|+|| ..++.++.. +.+ +. ....+.|..++|||||..++.|+..|.+.+=
T Consensus 229 ~ITSva~npd-~~~~v~S~n-t~R------------~~--~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 229 AITSVAFNPE-KDYLLWSYN-TAR------------FS--SPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ceeeeeeccc-cceeeeeee-eee------------ec--CCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 9999999999 566666543 222 11 2346789999999999999999988887653
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.79 E-value=2.1e-17 Score=155.25 Aligned_cols=294 Identities=15% Similarity=0.132 Sum_probs=208.7
Q ss_pred CCeEEEeCCCEEEEEeCCCCccccccccCC--CCcEEEEECCCCCEE-EEEeCCCcEEEEcCCCCceeeEEEeeccc-ce
Q 007283 28 SNSILYTNGRSVIILDLSNPLQVSIYGEHA--YPATVARFSPNGEWI-ASADVSGTVRIWGAHNDHVLKKEFRVLSG-RI 103 (609)
Q Consensus 28 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~--~~v~~~~~sp~g~~l-as~~~d~~i~vWd~~~~~~~~~~~~~~~~-~v 103 (609)
.|..+...|..+.|||.+.......+..|. -.+..+.|+....++ |+.+.|+.|++|.-..+......++...+ .-
T Consensus 3 eNl~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~ 82 (673)
T KOG4378|consen 3 ENLHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNA 82 (673)
T ss_pred cceeeeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchH
Confidence 355666678899999998766555554443 238889998877543 45567889999975433111111111111 22
Q ss_pred eEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeee
Q 007283 104 DDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLS 183 (609)
Q Consensus 104 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~ 183 (609)
.|++......++++.|.+. .+++|++....+...+++|...|+++.+...+.+ ||+++..|-|.+....+......
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~---~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~Dey-iAsvs~gGdiiih~~~t~~~tt~ 158 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSG---CVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEY-IASVSDGGDIIIHGTKTKQKTTT 158 (673)
T ss_pred HHHhhhhcceeeeccCcCc---eeeehhhHHHHHhhhccCCcceeEEEEecCCcce-eEEeccCCcEEEEecccCccccc
Confidence 3333333347888777654 5677777655556678999999999999988886 99999888899988777655555
Q ss_pred ccCc-ccceEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCC-eEEEEeCCCcEEEe
Q 007283 184 HRGH-SNFVNCVRFSPDGS-KFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGK-QVLTASADKSAKVW 260 (609)
Q Consensus 184 ~~~h-~~~v~~l~~s~dg~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~-~l~s~s~d~~i~iw 260 (609)
|... .+.|..+.|+|..+ +|.+++++|.|.+||+.....+..+. ..|+.+...++|+|.++ +|++.+.|..|.+|
T Consensus 159 f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~--~~HsAP~~gicfspsne~l~vsVG~Dkki~~y 236 (673)
T KOG4378|consen 159 FTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHAS--EAHSAPCRGICFSPSNEALLVSVGYDKKINIY 236 (673)
T ss_pred eecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchh--hhccCCcCcceecCCccceEEEecccceEEEe
Confidence 5433 45567999999877 56788999999999998877766553 47999999999999765 78899999999999
Q ss_pred ecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEec
Q 007283 261 DISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLN 334 (609)
Q Consensus 261 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 334 (609)
|... .+....+....+ ...+.+...+.+|+++...|.+..|+++....+...+..|...|++++|-.
T Consensus 237 D~~s---~~s~~~l~y~~P----lstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 237 DIRS---QASTDRLTYSHP----LSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred eccc---ccccceeeecCC----cceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeee
Confidence 9873 333333322111 011222234568888889999999999988888888999999999999864
No 164
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.7e-14 Score=144.28 Aligned_cols=472 Identities=16% Similarity=0.198 Sum_probs=277.4
Q ss_pred cccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCC---EEEEEECCCCcceEEE
Q 007283 53 YGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGL---RIVACGDGKGKSLVRA 129 (609)
Q Consensus 53 ~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~---~l~~~~~~~~~~~~~~ 129 (609)
++|-...-....||+|++++.... +..|+|+...++.+. +.+..|..++..+.+-|... ++.++.... .+++
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i-~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G---~I~v 86 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECI-TSLEDHTAPLTSVIVLPSSENANYLIVCSLDG---TIRV 86 (792)
T ss_pred eccccceecccccccCCcEEEEee-CCEEEEEecchHhhh-hhcccccCccceeeecCCCccceEEEEEecCc---cEEE
Confidence 444444444567999999988664 568999999987754 36778888999998888654 333444322 4889
Q ss_pred EEcCCCCeeEEEecCCccEEEEEEee---CCCeEEEEecCCCeE------------EEEeCCCCcee-e-eccCcccceE
Q 007283 130 FMWDSGTNVGEFDGHSRRVLSCAFKP---SRPFRIATCGEDFLV------------NFYEGPPFKFK-L-SHRGHSNFVN 192 (609)
Q Consensus 130 ~~~~~~~~~~~~~~h~~~v~~~~~~p---~~~~~i~t~~~d~~i------------~~~~~~~~~~~-~-~~~~h~~~v~ 192 (609)
|+|..+..+.++..+.. +..+.+.| +.+..+.....|..+ ..+...+.... . ...+|.. -.
T Consensus 87 wd~~~~~Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~ 164 (792)
T KOG1963|consen 87 WDWSDGELLKTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PK 164 (792)
T ss_pred ecCCCcEEEEEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-Cc
Confidence 99998888777764432 22222211 111111122222211 11111111100 0 0122322 35
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCccc-cccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceE
Q 007283 193 CVRFSPDGSKFISVSSDKKGIIYDGKTADKI-GELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLK 271 (609)
Q Consensus 193 ~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~ 271 (609)
++.+++.|.+.. ...+..+.+|...+.... ........|.-.+++.++||.+++++++-.||+|.+|.-.. .
T Consensus 165 ~I~~~~~ge~~~-i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~----~-- 237 (792)
T KOG1963|consen 165 SIVDNNSGEFKG-IVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFG----S-- 237 (792)
T ss_pred cEEEcCCceEEE-EEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccc----c--
Confidence 678888887544 445566778876654311 11111234777789999999999999999999999996221 0
Q ss_pred EEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEE
Q 007283 272 KTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVK 351 (609)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~ 351 (609)
. . .......+.=|...|.++.|+. ++..++||+..+.+.+
T Consensus 238 -----~---~-------------------------------~~~t~t~lHWH~~~V~~L~fS~-~G~~LlSGG~E~VLv~ 277 (792)
T KOG1963|consen 238 -----S---D-------------------------------DSETCTLLHWHHDEVNSLSFSS-DGAYLLSGGREGVLVL 277 (792)
T ss_pred -----c---c-------------------------------ccccceEEEecccccceeEEec-CCceEeecccceEEEE
Confidence 0 0 0001122333778899999874 5678999999999999
Q ss_pred EecCccccceeccccccceeEeee--eCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEec
Q 007283 352 WIQGIGYGGKLQRKENSQIKCFAA--IEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTD 429 (609)
Q Consensus 352 W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (609)
|..+++. .++..+-.+++..+.. +++.......|+.|.......... ...+.
T Consensus 278 Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~--k~tIs----------------------- 331 (792)
T KOG1963|consen 278 WQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEI--KSTIS----------------------- 331 (792)
T ss_pred EeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhh--hhhcc-----------------------
Confidence 9887664 2333333445544443 233344455566666554322110 00000
Q ss_pred ccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeee-EEEe--------cCCCceEEEEEC
Q 007283 430 SGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEE-AVLE--------KHRGAVSVIRYS 500 (609)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~-~~~~--------~h~~~i~~v~~s 500 (609)
|+.-. ... . ....+.-.+.++++|.-+.++..+..|.|.+||+.++....+ .+.. .+.-.|++++.+
T Consensus 332 -gi~~~-~~~-~-k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~ 407 (792)
T KOG1963|consen 332 -GIKPP-TPS-T-KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARS 407 (792)
T ss_pred -CccCC-Ccc-c-cccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhh
Confidence 00000 000 0 000011245677888777788888999999999876543221 1111 123357888899
Q ss_pred CCCCEEEEEe--------CC--CeEEEEEccCCce----EEeeecCCCCceEEEEECCC--CcEEEEEeCCCeEEEEEcC
Q 007283 501 PDVSMFASGD--------VN--REAIVWDRVSREV----KLKNMLYHTARINCLAWSPN--NSMVATGSLDTCVIIYEID 564 (609)
Q Consensus 501 ~~~~~l~s~s--------~d--~~v~iwd~~~~~~----~~~~~~~h~~~i~~l~~s~d--~~~l~s~s~D~~v~vw~~~ 564 (609)
.+|.++++.- .| -.+|+|-...... ..+....|...+.+.++.+. ..+.+|++.||.+++|-+.
T Consensus 408 ~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~ 487 (792)
T KOG1963|consen 408 RFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFT 487 (792)
T ss_pred ccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEe
Confidence 9999999864 23 3467886544332 12233467776666666543 2278999999999999873
Q ss_pred CCC-----C---cceeEeccccCCeEEEEEcCCCeEEEEeCCCcEEEEEccC
Q 007283 565 KPA-----S---SRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRLTP 608 (609)
Q Consensus 565 ~~~-----~---~~~~~~~~h~~~v~~~~~s~~~~l~s~s~D~~i~~W~~~~ 608 (609)
... . ....+..-|...+.++.|+-+..+++.|.|.+|.+|+.+.
T Consensus 488 ~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 488 DDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred cccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence 211 1 1122222367889999999444678899999999999764
No 165
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=1.5e-17 Score=154.54 Aligned_cols=252 Identities=19% Similarity=0.279 Sum_probs=175.4
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCcc
Q 007283 68 NGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRR 147 (609)
Q Consensus 68 ~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 147 (609)
-|+|+|-|.+|..|.|||+.-.......+ .+.....+.. -..++.-....+|++.
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~------------------~LGs~~sk~~-------~k~~k~~~~~~gHTda 245 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCV------------------TLGSKASKKK-------KKKGKRSNSASGHTDA 245 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccce------------------eechhhhhhh-------hhhcccccccccchHH
Confidence 37899999999999999986322111100 0000000000 0011111123589999
Q ss_pred EEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCcccccc
Q 007283 148 VLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPD-GSKFISVSSDKKGIIYDGKTADKIGEL 226 (609)
Q Consensus 148 v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~d-g~~l~s~~~d~~i~iwd~~~~~~~~~~ 226 (609)
|..++|...-..++|+||.|.++++||..++++...+..|...|.++.|+|. ...|++|+.|+++.+.|.+........
T Consensus 246 vl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~ 325 (463)
T KOG0270|consen 246 VLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE 325 (463)
T ss_pred HHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCce
Confidence 9999999888889999999999999999999999999999999999999997 558999999999999998853222111
Q ss_pred CcCCCCccceEEEEECCCCC-eEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcE
Q 007283 227 SPEDGHKGSVYAVSWSPDGK-QVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTI 305 (609)
Q Consensus 227 ~~~~~h~~~V~~l~~spd~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 305 (609)
-...+.|-.++|.|... .++++..||+++-+|++.. +
T Consensus 326 ---wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~--~------------------------------------- 363 (463)
T KOG0270|consen 326 ---WKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP--G------------------------------------- 363 (463)
T ss_pred ---EEeccceEEEEecCCCceeEEEecCCceEEeeecCCC--C-------------------------------------
Confidence 12457899999998765 5667778899999998631 1
Q ss_pred EEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecc--ccccceeEeeeeCC---cE
Q 007283 306 SIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQR--KENSQIKCFAAIEE---EI 380 (609)
Q Consensus 306 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~ 380 (609)
.+..+++.|...|.+++++...+.+++|++.|+.+++|+........... ..-....|++.... .+
T Consensus 364 ---------~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~l 434 (463)
T KOG0270|consen 364 ---------KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTL 434 (463)
T ss_pred ---------CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEE
Confidence 12245678999999999998888999999999999999876443322211 11223556665332 24
Q ss_pred EEEeccceEEEEecc
Q 007283 381 VTSGFDNKIWRVSLQ 395 (609)
Q Consensus 381 ~~~~~d~~i~~~~~~ 395 (609)
+.++..+.+++|++.
T Consensus 435 a~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 435 AFGGEKAVLRVWDIF 449 (463)
T ss_pred EecCccceEEEeecc
Confidence 445555557777654
No 166
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.78 E-value=1.8e-16 Score=145.77 Aligned_cols=159 Identities=22% Similarity=0.342 Sum_probs=121.2
Q ss_pred CCCcEEEEECCCCC-EEEEEeCCCcEEEEcCCCCce--------eeEEEeecccceeEEEECCCCCEEEEEECCCCcceE
Q 007283 57 AYPATVARFSPNGE-WIASADVSGTVRIWGAHNDHV--------LKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLV 127 (609)
Q Consensus 57 ~~~v~~~~~sp~g~-~las~~~d~~i~vWd~~~~~~--------~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~ 127 (609)
.++|..+.|.+++. .||||+.|..||||.+..... ....+..|...|..+.|+|+|+.|++++
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~-------- 84 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGG-------- 84 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecC--------
Confidence 35799999999887 999999999999998764321 1122334444555555555555555544
Q ss_pred EEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeC----------------CCCceeeeccCcccce
Q 007283 128 RAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEG----------------PPFKFKLSHRGHSNFV 191 (609)
Q Consensus 128 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~----------------~~~~~~~~~~~h~~~v 191 (609)
.++.+.+|-. +.+.....+.+|...|
T Consensus 85 --------------------------------------D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~di 126 (434)
T KOG1009|consen 85 --------------------------------------DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDI 126 (434)
T ss_pred --------------------------------------CCceEEEEEecCcCCccccchhhhCccceEEEEEecccccch
Confidence 4444444421 2244556678899999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeeccc
Q 007283 192 NCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE 264 (609)
Q Consensus 192 ~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~ 264 (609)
..++|+||+.++++++-|..+++||+..|.....+ .+|..-|..++|.|-++++++-+.|+..+.+.+..
T Consensus 127 ydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~---~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 127 YDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAIL---DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKL 196 (434)
T ss_pred hhhhccCCCceeeeeeccceEEEEEeccceeEeec---cccccccceeecchhhhhhhhhccCcccceeeeee
Confidence 99999999999999999999999999999988766 47999999999999999999999999888887653
No 167
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.77 E-value=1.1e-16 Score=140.49 Aligned_cols=289 Identities=19% Similarity=0.260 Sum_probs=190.9
Q ss_pred CEEEEEeCCCC--cc-ccccccCCCCcEEEEECC-CCCEEEEEeCC-------CcEEEEcCCCCce--------eeEEEe
Q 007283 37 RSVIILDLSNP--LQ-VSIYGEHAYPATVARFSP-NGEWIASADVS-------GTVRIWGAHNDHV--------LKKEFR 97 (609)
Q Consensus 37 ~~~~i~~~~~~--~~-~~~~~~h~~~v~~~~~sp-~g~~las~~~d-------~~i~vWd~~~~~~--------~~~~~~ 97 (609)
+.|.+.++..+ .. -..|..|.+.|..++-+| |.++|+|+-.+ ..+-||.++.... +...+.
T Consensus 40 NqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ld 119 (370)
T KOG1007|consen 40 NQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLD 119 (370)
T ss_pred ceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCC
Confidence 56666555432 22 245677889999999999 45666765442 2468998874321 111222
Q ss_pred -ecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCe-eEEE-----ecCCccEEEEEEeeC-CCeEEEEecCCCe
Q 007283 98 -VLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTN-VGEF-----DGHSRRVLSCAFKPS-RPFRIATCGEDFL 169 (609)
Q Consensus 98 -~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~h~~~v~~~~~~p~-~~~~i~t~~~d~~ 169 (609)
.+-+.|.++.|.|++..|++..+++ +.+|..+.... .+.+ .+|....++.+|+|. +...+++ -.|++
T Consensus 120 teavg~i~cvew~Pns~klasm~dn~----i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~t 194 (370)
T KOG1007|consen 120 TEAVGKINCVEWEPNSDKLASMDDNN----IVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDST 194 (370)
T ss_pred HHHhCceeeEEEcCCCCeeEEeccCc----eEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCc
Confidence 3456899999999999999987654 45666665443 3333 246677889999993 2233444 45778
Q ss_pred EEEEeCCCCceeeec-cCcccceEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCC-CC
Q 007283 170 VNFYEGPPFKFKLSH-RGHSNFVNCVRFSPDGS-KFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD-GK 246 (609)
Q Consensus 170 i~~~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd-~~ 246 (609)
+..||.++.+..... ..|...|..+.|+|+-+ .|++|++|+.++|||.+..+. .+....+|+..|.++.|.|. .+
T Consensus 195 l~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~--pv~el~~HsHWvW~VRfn~~hdq 272 (370)
T KOG1007|consen 195 LQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF--PVQELPGHSHWVWAVRFNPEHDQ 272 (370)
T ss_pred EEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc--cccccCCCceEEEEEEecCccce
Confidence 999998876554443 46888999999999976 789999999999999876542 22233589999999999996 46
Q ss_pred eEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCC
Q 007283 247 QVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKN 326 (609)
Q Consensus 247 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~ 326 (609)
+++++|.|..|.+|....-.....+.. .......... +..=+.--+ ..+....+..|...
T Consensus 273 LiLs~~SDs~V~Lsca~svSSE~qi~~-~~dese~e~~-----------------dseer~kpL--~dg~l~tydehEDS 332 (370)
T KOG1007|consen 273 LILSGGSDSAVNLSCASSVSSEQQIEF-EDDESESEDE-----------------DSEERVKPL--QDGQLETYDEHEDS 332 (370)
T ss_pred EEEecCCCceeEEEecccccccccccc-ccccccCcch-----------------hhHHhcccc--cccccccccccccc
Confidence 889999999999998643222111110 0000000000 000000000 01122345679999
Q ss_pred eEEEEEecCCCCEEEEEecCCcEEEE
Q 007283 327 VTALTVLNIDPKVILSSSYDGLIVKW 352 (609)
Q Consensus 327 v~~~~~~~~~~~~~~t~s~dg~i~~W 352 (609)
|+++++++.+|.++++-|.||.+.+-
T Consensus 333 VY~~aWSsadPWiFASLSYDGRviIs 358 (370)
T KOG1007|consen 333 VYALAWSSADPWIFASLSYDGRVIIS 358 (370)
T ss_pred eEEEeeccCCCeeEEEeccCceEEee
Confidence 99999999999999999999999875
No 168
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.76 E-value=2.6e-16 Score=140.80 Aligned_cols=295 Identities=19% Similarity=0.265 Sum_probs=199.0
Q ss_pred ccccCCCCcEEEEECC-----CCCEEEEEeCCCcEEEEcCCCCc--e-eeEEEe-ecccceeEEEECCC---CCEEEEEE
Q 007283 52 IYGEHAYPATVARFSP-----NGEWIASADVSGTVRIWGAHNDH--V-LKKEFR-VLSGRIDDLQWSPD---GLRIVACG 119 (609)
Q Consensus 52 ~~~~h~~~v~~~~~sp-----~g~~las~~~d~~i~vWd~~~~~--~-~~~~~~-~~~~~v~~~~~spd---g~~l~~~~ 119 (609)
..+.|+.+|..++|.+ +-+.+|+++ ...+.++....+. . +..-.. .+.+....++|+=| +.-+++++
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 4567888899999984 234556654 3467788776543 1 111111 24566788899875 34444444
Q ss_pred CCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeec---cCcccceEEEEE
Q 007283 120 DGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSH---RGHSNFVNCVRF 196 (609)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~---~~h~~~v~~l~~ 196 (609)
. ...++|+.+..++.....+.+|...|..+.|+|+.+..+++++.|+.+++|++.+..++..+ .||.+.|.++.|
T Consensus 112 G--~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 112 G--YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred c--ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 3 35579999999998889999999999999999999999999999999999999999888775 579999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCcccc------ccC-------------------cCCCCccceEEEEECCCCCeEEEE
Q 007283 197 SPDGSKFISVSSDKKGIIYDGKTADKIG------ELS-------------------PEDGHKGSVYAVSWSPDGKQVLTA 251 (609)
Q Consensus 197 s~dg~~l~s~~~d~~i~iwd~~~~~~~~------~~~-------------------~~~~h~~~V~~l~~spd~~~l~s~ 251 (609)
+++|.+|++++.|..+++|+....+... ++. ...-|...|-|+.|- |.++++-
T Consensus 190 ~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSk 267 (385)
T KOG1034|consen 190 SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSK 267 (385)
T ss_pred cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeec
Confidence 9999999999999999999876322110 010 112355566666663 6889999
Q ss_pred eCCCcEEEeecccCCCCceEEEeccCCC------------CCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCc-e
Q 007283 252 SADKSAKVWDISEDNHGKLKKTLTPSGS------------GGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSP-L 318 (609)
Q Consensus 252 s~d~~i~iwd~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~-~ 318 (609)
|-++.|..|.... .+..+....+... ..+-.+...+..-.++++++...|.+.+|+++..+... .
T Consensus 268 scenaI~~w~pgk--l~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~t 345 (385)
T KOG1034|consen 268 SCENAIVCWKPGK--LEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCT 345 (385)
T ss_pred ccCceEEEEecch--hhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCc
Confidence 9999999998621 0001000101000 00111122222236689999999999999987554322 1
Q ss_pred eee--CCCCCeEEEEEecCCCCEEEEEecCCcEEEEec
Q 007283 319 QLS--GHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQ 354 (609)
Q Consensus 319 ~~~--~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~ 354 (609)
++. -....|...+|+ .++.+++....|++|-.|+.
T Consensus 346 tl~~s~~~~tVRQ~sfS-~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 346 TLTHSKSGSTVRQTSFS-RDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred eEEeccccceeeeeeec-ccCcEEEEEeCCCcEEEEEe
Confidence 222 122345555554 34567777778888877753
No 169
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=2.6e-17 Score=170.26 Aligned_cols=250 Identities=19% Similarity=0.326 Sum_probs=182.3
Q ss_pred cceEEEEEcCCCCE----EEEEeCCCcEEEEeCCC---CccccccCcCCCCccceEEEEECCCCC-eEEEEeCCCcEEEe
Q 007283 189 NFVNCVRFSPDGSK----FISVSSDKKGIIYDGKT---ADKIGELSPEDGHKGSVYAVSWSPDGK-QVLTASADKSAKVW 260 (609)
Q Consensus 189 ~~v~~l~~s~dg~~----l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~h~~~V~~l~~spd~~-~l~s~s~d~~i~iw 260 (609)
...+.|+|.+.|.. ||.|.+||.|.+||... +.....+.....|++.|..+.|.+.+. +||+|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 35688999988775 88899999999999765 232223333357999999999999876 99999999999999
Q ss_pred ecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEE
Q 007283 261 DISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVI 340 (609)
Q Consensus 261 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 340 (609)
|+.... ..+... -..-...|.+++|......++
T Consensus 145 Dlnn~~-----tP~~~~------------------------------------------~~~~~~eI~~lsWNrkvqhIL 177 (1049)
T KOG0307|consen 145 DLNKPE-----TPFTPG------------------------------------------SQAPPSEIKCLSWNRKVSHIL 177 (1049)
T ss_pred ccCCcC-----CCCCCC------------------------------------------CCCCcccceEeccchhhhHHh
Confidence 986311 001000 001235677788775556789
Q ss_pred EEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccC
Q 007283 341 LSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHY 420 (609)
Q Consensus 341 ~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (609)
++++.+|.+.+||+.... ++..++. .
T Consensus 178 AS~s~sg~~~iWDlr~~~----------pii~ls~-------------------------------------------~- 203 (1049)
T KOG0307|consen 178 ASGSPSGRAVIWDLRKKK----------PIIKLSD-------------------------------------------T- 203 (1049)
T ss_pred hccCCCCCceeccccCCC----------ccccccc-------------------------------------------C-
Confidence 999999999999875321 1100000 0
Q ss_pred CcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCC-EEEEEeCCC---cEEEEEecCCeeeeeEEEecCCCceEE
Q 007283 421 PELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGS-EAIIGSQDG---KLRVYSIRGDTLTEEAVLEKHRGAVSV 496 (609)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~-~l~~gs~dg---~i~iw~~~~~~~~~~~~~~~h~~~i~~ 496 (609)
..+..++.++++|++. .+++++.|. .|.+||++.-. ...+++++|...|.+
T Consensus 204 ------------------------~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as-sP~k~~~~H~~Gils 258 (1049)
T KOG0307|consen 204 ------------------------PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS-SPLKILEGHQRGILS 258 (1049)
T ss_pred ------------------------CCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC-Cchhhhcccccceee
Confidence 0001256788899775 466666654 68999986433 335677899999999
Q ss_pred EEECCCC-CEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCc-EEEEEeCCCeEEEEEcCC
Q 007283 497 IRYSPDV-SMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNS-MVATGSLDTCVIIYEIDK 565 (609)
Q Consensus 497 v~~s~~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~-~l~s~s~D~~v~vw~~~~ 565 (609)
++|++.+ .+++|++.|+.+.+|+.++++.. ..+......+..+.|.|..- .++.++.||.|.|+.+..
T Consensus 259 lsWc~~D~~lllSsgkD~~ii~wN~~tgEvl-~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 259 LSWCPQDPRLLLSSGKDNRIICWNPNTGEVL-GELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred eccCCCCchhhhcccCCCCeeEecCCCceEe-eecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 9999887 89999999999999999887753 34455667899999999775 889999999999999853
No 170
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=1.2e-16 Score=148.50 Aligned_cols=231 Identities=20% Similarity=0.261 Sum_probs=165.1
Q ss_pred CCeEEEEEcCCcEEEEeCCCCCC--Ccee------------------eeCCCCCeEEEEEecCCCCEEEEEecCCcEEEE
Q 007283 293 NDFLVIVSLGGTISIFSANDLEK--SPLQ------------------LSGHMKNVTALTVLNIDPKVILSSSYDGLIVKW 352 (609)
Q Consensus 293 ~~~~~~~~~~g~i~~~~~~~~~~--~~~~------------------~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W 352 (609)
++++++|+.+..|.||+++-... +..+ ..+|+..|..+.+...-.+++++||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 56899999999999998752211 1111 237888888888875556899999999999999
Q ss_pred ecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccE
Q 007283 353 IQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGV 432 (609)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (609)
++..+.......
T Consensus 272 D~~~g~p~~s~~-------------------------------------------------------------------- 283 (463)
T KOG0270|consen 272 DVDTGKPKSSIT-------------------------------------------------------------------- 283 (463)
T ss_pred EcCCCCcceehh--------------------------------------------------------------------
Confidence 987653211100
Q ss_pred EEeeCCeeeEEeccCCceeEEEEcC-CCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCC-EEEEEe
Q 007283 433 VLLRGAEVVSTINLRFPVTASAIAP-DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVS-MFASGD 510 (609)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~sp-~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~-~l~s~s 510 (609)
.+..+|.++.++| ....+++|+.|+++++.|.+..... ...=...+.|-.++|.|... .+.++.
T Consensus 284 ------------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s--~~~wk~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 284 ------------HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS--GKEWKFDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred ------------hcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc--CceEEeccceEEEEecCCCceeEEEec
Confidence 0123477778877 4567999999999999998742211 11112467899999988864 566777
Q ss_pred CCCeEEEEEccCCceEEeeecCCCCceEEEEECCCC-cEEEEEeCCCeEEEEEcCCCCCcceeEecccc---CCeEEEEE
Q 007283 511 VNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNN-SMVATGSLDTCVIIYEIDKPASSRMTIKGAHL---GGVYGLAF 586 (609)
Q Consensus 511 ~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~-~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~---~~v~~~~~ 586 (609)
.||+++-+|.++....+-.+..|.++|.++++++.. .+|+|++.|++|++|+++...... ...|. ++..|.++
T Consensus 350 ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~---v~~~~~~~~rl~c~~~ 426 (463)
T KOG0270|consen 350 DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS---VKEHSFKLGRLHCFAL 426 (463)
T ss_pred CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcc---cccccccccceeeccc
Confidence 999999999988766666678999999999999865 578999999999999986422111 12232 34445555
Q ss_pred cC--CCeEEEEeCCCcEEEEEccC
Q 007283 587 TD--EHSVVSSGEDACVRVWRLTP 608 (609)
Q Consensus 587 s~--~~~l~s~s~D~~i~~W~~~~ 608 (609)
-+ .-.++.||.-+.+++||+..
T Consensus 427 ~~~~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 427 DPDVAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred CCCcceEEEecCccceEEEeeccc
Confidence 52 24577788888899999853
No 171
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.75 E-value=3.1e-16 Score=139.94 Aligned_cols=274 Identities=18% Similarity=0.278 Sum_probs=185.2
Q ss_pred cEEEEECCCCCEEEEEeCCCcEEEEcCCCCc-------e----eeEEEeec-ccceeEEEEC-------CCCCEEEEEEC
Q 007283 60 ATVARFSPNGEWIASADVSGTVRIWGAHNDH-------V----LKKEFRVL-SGRIDDLQWS-------PDGLRIVACGD 120 (609)
Q Consensus 60 v~~~~~sp~g~~las~~~d~~i~vWd~~~~~-------~----~~~~~~~~-~~~v~~~~~s-------pdg~~l~~~~~ 120 (609)
...+.|||||.-|++-+.|..+++|.+.... . ....++.. .+-|...+|= |+..++++...
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 4457899999999999999999999876321 1 11112222 2346666765 55555555544
Q ss_pred CCCcceEEEEEcCCCCeeEEEe--cCCccE---EEEEEeeCCCeEEEEecCCCeEEEEeC-CCCceeee-------ccCc
Q 007283 121 GKGKSLVRAFMWDSGTNVGEFD--GHSRRV---LSCAFKPSRPFRIATCGEDFLVNFYEG-PPFKFKLS-------HRGH 187 (609)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~--~h~~~v---~~~~~~p~~~~~i~t~~~d~~i~~~~~-~~~~~~~~-------~~~h 187 (609)
... +++|+--+++..+++. .|.+++ .+++|+|||..++ +|....|+++|. +++..... ..+.
T Consensus 132 ~~P---Ih~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlf--aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq 206 (406)
T KOG2919|consen 132 DQP---IHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLF--AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQ 206 (406)
T ss_pred cCc---eeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEe--ecccceEEEeeccCCCCCCcchhhhhcccccc
Confidence 333 4455554677666654 355544 4799999999755 477888999996 55532211 2345
Q ss_pred ccceEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeC-CCcEEEeecccC
Q 007283 188 SNFVNCVRFSPDGS-KFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA-DKSAKVWDISED 265 (609)
Q Consensus 188 ~~~v~~l~~s~dg~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~-d~~i~iwd~~~~ 265 (609)
.+-+.|++|+|-.. .++.++....+-||.......+..+ .+|.+.|+.++|++||+.|++|+. |-.|-.||++..
T Consensus 207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll---ggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~ 283 (406)
T KOG2919|consen 207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL---GGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS 283 (406)
T ss_pred cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee---cccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence 77899999999755 8899999999989887777766655 389999999999999999999986 788999999742
Q ss_pred CCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEe
Q 007283 266 NHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSS 344 (609)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s 344 (609)
+...-.+..........+.+.....+..|++++++|.|++|++.+....+..+..|...+..+.+++.- .+++|++
T Consensus 284 --~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~m-pilatss 359 (406)
T KOG2919|consen 284 --RDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIM-PILATSS 359 (406)
T ss_pred --cchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCccc-ceeeecc
Confidence 111111111000000111222223466889999999999999988766667777888899999887653 3555554
No 172
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=9.2e-16 Score=131.54 Aligned_cols=234 Identities=15% Similarity=0.226 Sum_probs=167.0
Q ss_pred CcEEEEECCCCCEEEEEeCCCcEEEEcCCC---------CceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEE
Q 007283 59 PATVARFSPNGEWIASADVSGTVRIWGAHN---------DHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRA 129 (609)
Q Consensus 59 ~v~~~~~sp~g~~las~~~d~~i~vWd~~~---------~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~ 129 (609)
.|..-+++|.+++|+.|+.+|+|-+..+.. ++.....++.|.++|+.++|. ..+|+++||| .++-
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gdG----~V~g 85 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGDG----LVYG 85 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccCc----eEEE
Confidence 366668999999999999999999987653 122223457899999999999 3478888875 3778
Q ss_pred EEcCCCC------eeEEE--ecCC-----ccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEE
Q 007283 130 FMWDSGT------NVGEF--DGHS-----RRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRF 196 (609)
Q Consensus 130 ~~~~~~~------~~~~~--~~h~-----~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~ 196 (609)
|.|.... .+... .-|. .+|+++-..|.... +..++.|+.+..||.++++..++++||.++|.++.-
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~ 164 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVG 164 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeee
Confidence 8887421 11111 1122 45888889988775 555568999999999999999999999999999988
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCccccccCcCC------CCc-cceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCc
Q 007283 197 SPDGSKFISVSSDKKGIIYDGKTADKIGELSPED------GHK-GSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGK 269 (609)
Q Consensus 197 s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------~h~-~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~ 269 (609)
-.....+++|+.||++++||.++++....+.+.+ .|. ..|.+++- +..+|++|+ ...+.+|.++.. .
T Consensus 165 R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrss---e 238 (325)
T KOG0649|consen 165 RNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSS---E 238 (325)
T ss_pred cccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCC---C
Confidence 4444568999999999999999998876654332 122 24566654 456776665 678999998742 2
Q ss_pred eEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCC
Q 007283 270 LKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSAN 311 (609)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 311 (609)
...++... ...-.+.+..+.+++++..+.+.-|.++
T Consensus 239 ~t~vfpip------a~v~~v~F~~d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 239 STCVFPIP------ARVHLVDFVDDCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred ceEEEecc------cceeEeeeecceEEEeccccceeeeeec
Confidence 22333211 1122345667888888888888888765
No 173
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.75 E-value=1.2e-16 Score=146.22 Aligned_cols=207 Identities=22% Similarity=0.262 Sum_probs=149.2
Q ss_pred EEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCC-------ceeeeccCcccceEEEEEcCCC-CEEEEEeCCCc
Q 007283 140 EFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF-------KFKLSHRGHSNFVNCVRFSPDG-SKFISVSSDKK 211 (609)
Q Consensus 140 ~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~-------~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~d~~ 211 (609)
.+.||+.+|..++|.|-+..+||+|+.|.++.+|.++.. +....+.||...|..++|+|.. +.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 356999999999999999999999999999999987543 3345678999999999999984 48899999999
Q ss_pred EEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEE
Q 007283 212 GIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW 291 (609)
Q Consensus 212 i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (609)
|.||++.+++.+.++ .|...|++++|+-||.+|++.+.|..||+||.+. +++...- ..+. +.......++-
T Consensus 156 v~iWnv~tgeali~l----~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~---~~~v~e~-~~he-G~k~~Raifl~ 226 (472)
T KOG0303|consen 156 VSIWNVGTGEALITL----DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRR---GTVVSEG-VAHE-GAKPARAIFLA 226 (472)
T ss_pred EEEEeccCCceeeec----CCCCeEEEEEeccCCceeeeecccceeEEEcCCC---CcEeeec-cccc-CCCcceeEEec
Confidence 999999999988776 3999999999999999999999999999999873 4444433 1211 11222222233
Q ss_pred cCCeEEEEEc----CCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEE-EEEecCCcEEEEecCc
Q 007283 292 QNDFLVIVSL----GGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVI-LSSSYDGLIVKWIQGI 356 (609)
Q Consensus 292 ~~~~~~~~~~----~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-~t~s~dg~i~~W~~~~ 356 (609)
+++ +++.+. +..+.+|+......+.....-.+++-.-+=|.+.+..++ +.|-.|+.||.+....
T Consensus 227 ~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 227 SGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred cCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 344 444433 456888987655544322222222222233444455555 4555799999996543
No 174
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.75 E-value=3.6e-16 Score=137.36 Aligned_cols=243 Identities=23% Similarity=0.386 Sum_probs=176.4
Q ss_pred cCceeEEeecCCCCeEEEe--C---C----CEEEEEeCCCCccc---------cccc-cCCCCcEEEEECCCCCEEEEEe
Q 007283 16 RGRGILISGHPKSNSILYT--N---G----RSVIILDLSNPLQV---------SIYG-EHAYPATVARFSPNGEWIASAD 76 (609)
Q Consensus 16 ~~~~~~~~~~~~~~~l~~~--~---~----~~~~i~~~~~~~~~---------~~~~-~h~~~v~~~~~sp~g~~las~~ 76 (609)
.|-.-.|+.+|-...|+.+ + + ..+.||.+..+... ..+. .|-++|.|+.|.||+..||+..
T Consensus 63 agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~ 142 (370)
T KOG1007|consen 63 AGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD 142 (370)
T ss_pred CcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec
Confidence 4555578888876555332 1 1 25679998665433 1222 4456899999999999999885
Q ss_pred CCCcEEEEcCCCCceeeEEEe-----ecccceeEEEECC--CCCEEEEEECCCCcceEEEEEcCCCCeeEEE-ecCCccE
Q 007283 77 VSGTVRIWGAHNDHVLKKEFR-----VLSGRIDDLQWSP--DGLRIVACGDGKGKSLVRAFMWDSGTNVGEF-DGHSRRV 148 (609)
Q Consensus 77 ~d~~i~vWd~~~~~~~~~~~~-----~~~~~v~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v 148 (609)
|..|.+|+.+.......++. .+......-+||| ||..+++.+++. ++.|+..+-.+...+ ..|...|
T Consensus 143 -dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~t----l~~~D~RT~~~~~sI~dAHgq~v 217 (370)
T KOG1007|consen 143 -DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDST----LQFWDLRTMKKNNSIEDAHGQRV 217 (370)
T ss_pred -cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCc----EEEEEccchhhhcchhhhhccee
Confidence 88999999986543122221 2344677889999 899999988654 456665554444433 5788899
Q ss_pred EEEEEeeCCCeEEEEecCCCeEEEEeCCCCc-eeeeccCcccceEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCc-----
Q 007283 149 LSCAFKPSRPFRIATCGEDFLVNFYEGPPFK-FKLSHRGHSNFVNCVRFSPD-GSKFISVSSDKKGIIYDGKTAD----- 221 (609)
Q Consensus 149 ~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~-~~~~~~~h~~~v~~l~~s~d-g~~l~s~~~d~~i~iwd~~~~~----- 221 (609)
..++|.|+....+++||.|+.+++||.+..+ ..+++.+|.-.|.++.|+|. .++|++++.|..+.+|....-.
T Consensus 218 rdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi 297 (370)
T KOG1007|consen 218 RDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQI 297 (370)
T ss_pred eeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccccc
Confidence 9999999999999999999999999976544 56778899999999999997 4578999999999998532110
Q ss_pred ----------------cccc-----cCcCCCCccceEEEEECCCCC-eEEEEeCCCcEEEeecc
Q 007283 222 ----------------KIGE-----LSPEDGHKGSVYAVSWSPDGK-QVLTASADKSAKVWDIS 263 (609)
Q Consensus 222 ----------------~~~~-----~~~~~~h~~~V~~l~~spd~~-~l~s~s~d~~i~iwd~~ 263 (609)
+... +.....|...|++++||.-.. .||+-|.||.+.|=.+.
T Consensus 298 ~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 298 EFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 0001 111246899999999998666 56777999999887653
No 175
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.73 E-value=2.9e-16 Score=136.25 Aligned_cols=304 Identities=18% Similarity=0.201 Sum_probs=183.9
Q ss_pred eeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEE
Q 007283 180 FKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKV 259 (609)
Q Consensus 180 ~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~i 259 (609)
..+.+++|...++++.|-.+++ |.+|...|.+++|+.++......+.. .|...|+.+.--|+ ..|.+-+.|..+.+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~--~g~~~it~lq~~p~-d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRL--FGRLFITNLQSIPN-DSLDTQGRDPLLIL 81 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhh--hccceeeceeecCC-cchhhcCCCceEEE
Confidence 3455678999999999988876 88899999999999988776544421 36678999998887 56789999999999
Q ss_pred eecccCCCCceEEEeccCCCCCccceEEEEEEcCC---eEEEEEcCCcEEEEeCCCCCCCc-ee-----eeCCCCCeEEE
Q 007283 260 WDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQND---FLVIVSLGGTISIFSANDLEKSP-LQ-----LSGHMKNVTAL 330 (609)
Q Consensus 260 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~i~~~~~~~~~~~~-~~-----~~~h~~~v~~~ 330 (609)
|++...... .+..+.... +.........+++ .++..-..+.-.... .+..... .. -.+..+.+.+.
T Consensus 82 w~ia~s~~i-~i~Si~~ns---lgFCrfSl~~~~k~~eqll~yp~rgsde~h~-~D~g~~tqv~i~dd~~~~Klgsvmc~ 156 (323)
T KOG0322|consen 82 WTIAYSAFI-SIHSIVVNS---LGFCRFSLVKKPKNSEQLLEYPSRGSDETHK-QDGGDTTQVQIADDSERSKLGSVMCQ 156 (323)
T ss_pred EEccCcceE-EEeeeeccc---cccccceeccCCCcchhheecCCcccchhhh-hccCccceeEccCchhccccCceeee
Confidence 998642111 111110000 0000000000000 111110000000000 0000000 00 11223344444
Q ss_pred EEe-cCCCC-EEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccC
Q 007283 331 TVL-NIDPK-VILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIG 408 (609)
Q Consensus 331 ~~~-~~~~~-~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~ 408 (609)
.+- ..... +++.|-.+|.+.+|+...+... .+ ++...
T Consensus 157 ~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~-~~------------------------------~~~~~---------- 195 (323)
T KOG0322|consen 157 DKDHACGSTFLLLAGYESGHVVIWDLSTGDKI-IQ------------------------------LPQSS---------- 195 (323)
T ss_pred eccccccceEEEEEeccCCeEEEEEccCCcee-ec------------------------------ccccc----------
Confidence 322 11222 4556667888888876543100 00 00000
Q ss_pred CCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCC--eeeeeEE
Q 007283 409 SQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGD--TLTEEAV 486 (609)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~--~~~~~~~ 486 (609)
........+..++.++.+.+....-|+|+.+..+..|+++.. .+.....
T Consensus 196 -----------------------------kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e 246 (323)
T KOG0322|consen 196 -----------------------------KVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE 246 (323)
T ss_pred -----------------------------ccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence 000011123467788888887777889999999999988643 2322222
Q ss_pred EecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEc
Q 007283 487 LEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEI 563 (609)
Q Consensus 487 ~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~ 563 (609)
.+-..-.|..+..-||++.+|++++|+.+|+|+-++.. .+..++.|.+.|++++||||...+|+|+.|+.|.+|++
T Consensus 247 ~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~-pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 247 ITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN-PLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEecCCCccceEEccCCcEEeecccCCcEEEEEeccCC-chhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 22223458888999999999999999999999976654 35567899999999999999999999999999999985
No 176
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=8.9e-17 Score=148.88 Aligned_cols=197 Identities=21% Similarity=0.323 Sum_probs=147.0
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEE
Q 007283 61 TVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGE 140 (609)
Q Consensus 61 ~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (609)
.+++|+++|..||++..||++|||+++.-..+. ....|.+.|..+.|||||+.|+++|.+. .++|+.+.+..+..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l-~e~~~~~eV~DL~FS~dgk~lasig~d~----~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL-EEIAHHAEVKDLDFSPDGKFLASIGADS----ARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh-hhHhhcCccccceeCCCCcEEEEecCCc----eEEEEeccCchhhh
Confidence 789999999999999999999999987654332 3556788999999999999999998653 56777777755544
Q ss_pred Ee--cCCccEEEEEEeeCC---CeEEEEe-cCCCeEEEEeCCCCce-----eeeccCcccceEEEEEcCCCCEEEEEeCC
Q 007283 141 FD--GHSRRVLSCAFKPSR---PFRIATC-GEDFLVNFYEGPPFKF-----KLSHRGHSNFVNCVRFSPDGSKFISVSSD 209 (609)
Q Consensus 141 ~~--~h~~~v~~~~~~p~~---~~~i~t~-~~d~~i~~~~~~~~~~-----~~~~~~h~~~v~~l~~s~dg~~l~s~~~d 209 (609)
.. +-......|.|+.++ ..++++- ..-+.+..++...++. .+........|++++.++||+++|.|+.|
T Consensus 223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence 33 112345578887665 3444443 3334455544332221 11111223469999999999999999999
Q ss_pred CcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeeccc
Q 007283 210 KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE 264 (609)
Q Consensus 210 ~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~ 264 (609)
|.|.|++..+-+.+...+ +.|...|+.+.|+||.+++++.+.|.+..+..+..
T Consensus 303 GsVai~~~~~lq~~~~vk--~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVK--EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CcEEEEEeceeeeeEeeh--hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999988877765553 47999999999999999999999999999987753
No 177
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.73 E-value=1.6e-15 Score=135.73 Aligned_cols=221 Identities=19% Similarity=0.237 Sum_probs=150.2
Q ss_pred EEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEE-EeCCCcEEEEcCCCCceeeEEEeec
Q 007283 21 LISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIAS-ADVSGTVRIWGAHNDHVLKKEFRVL 99 (609)
Q Consensus 21 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las-~~~d~~i~vWd~~~~~~~~~~~~~~ 99 (609)
..+++|+|++|+..+.-.++|-|..+-+..+.|.- -+.|.-+.+.-|.-++.. +..|+.|++|++...+-- ......
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~-ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY-CKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeE-EEeccC
Confidence 57899999999999888999999887666554443 356888889988888774 567899999999765421 234556
Q ss_pred ccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecC-CccEEEEEEeeCCCeEEEEec-CCCe--EEEEeC
Q 007283 100 SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGH-SRRVLSCAFKPSRPFRIATCG-EDFL--VNFYEG 175 (609)
Q Consensus 100 ~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~i~t~~-~d~~--i~~~~~ 175 (609)
..++..++|||||+.++..+.- ..|+..|...+....+-.| ...+...+|+|++.+ .+.++ .|.. +.+..-
T Consensus 91 ~agls~~~WSPdgrhiL~tseF----~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f-~ai~sRrDCkdyv~i~~c 165 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEF----DLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQF-CAILSRRDCKDYVQISSC 165 (447)
T ss_pred CCcceeeeECCCcceEeeeecc----eeEEEEEEeccceeEEecccccCceeEEECCCCce-eeeeecccHHHHHHHHhh
Confidence 6789999999999999887642 3567777766554444444 334678899999986 44443 3321 111111
Q ss_pred CCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCC
Q 007283 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADK 255 (609)
Q Consensus 176 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~ 255 (609)
..+.....+.-.....+.+.|+|||+.||+ ||.--.-.+..+ .-.-.+..++|+|-+++|+.|+.|+
T Consensus 166 ~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~aY----e~~lG~k~v~wsP~~qflavGsyD~ 232 (447)
T KOG4497|consen 166 KAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAY----ERGLGLKFVEWSPCNQFLAVGSYDQ 232 (447)
T ss_pred HHHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeeee----eeccceeEEEeccccceEEeeccch
Confidence 112223334445566788999999998774 432111111111 0113588899999999999999999
Q ss_pred cEEEee
Q 007283 256 SAKVWD 261 (609)
Q Consensus 256 ~i~iwd 261 (609)
.+|+-+
T Consensus 233 ~lrvln 238 (447)
T KOG4497|consen 233 MLRVLN 238 (447)
T ss_pred hhhhhc
Confidence 999865
No 178
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=3.4e-17 Score=169.36 Aligned_cols=222 Identities=16% Similarity=0.283 Sum_probs=174.3
Q ss_pred CEEEEEeCCC----C--ccccccccCCCCcEEEEECCCCC-EEEEEeCCCcEEEEcCCCCceeeEEE-e-ecccceeEEE
Q 007283 37 RSVIILDLSN----P--LQVSIYGEHAYPATVARFSPNGE-WIASADVSGTVRIWGAHNDHVLKKEF-R-VLSGRIDDLQ 107 (609)
Q Consensus 37 ~~~~i~~~~~----~--~~~~~~~~h~~~v~~~~~sp~g~-~las~~~d~~i~vWd~~~~~~~~~~~-~-~~~~~v~~~~ 107 (609)
+.|.+||... . ..+..+..|++.|..+.|+|.+. +||+|+.||+|.|||+..-+.- ... . ...+.|.+++
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP-~~~~~~~~~~eI~~ls 168 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETP-FTPGSQAPPSEIKCLS 168 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCC-CCCCCCCCcccceEec
Confidence 5677777643 1 23556789999999999999765 9999999999999999864311 111 1 1356799999
Q ss_pred ECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCc--cEEEEEEeeCCCeEEEEecCCC---eEEEEeCCCCc-ee
Q 007283 108 WSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSR--RVLSCAFKPSRPFRIATCGEDF---LVNFYEGPPFK-FK 181 (609)
Q Consensus 108 ~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~p~~~~~i~t~~~d~---~i~~~~~~~~~-~~ 181 (609)
|...-+++++.+...++ ..+|+.+..+.+..+..|.+ .+..++|||++..++++++.|. .|.+||.+... ..
T Consensus 169 WNrkvqhILAS~s~sg~--~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~ 246 (1049)
T KOG0307|consen 169 WNRKVSHILASGSPSGR--AVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPL 246 (1049)
T ss_pred cchhhhHHhhccCCCCC--ceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCch
Confidence 99988888877755443 44677767766766766654 4778999999998898887764 68999976433 34
Q ss_pred eeccCcccceEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCC-eEEEEeCCCcEEE
Q 007283 182 LSHRGHSNFVNCVRFSPDG-SKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGK-QVLTASADKSAKV 259 (609)
Q Consensus 182 ~~~~~h~~~v~~l~~s~dg-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~-~l~s~s~d~~i~i 259 (609)
+.+.+|...|.++.|++.+ .+|++++.|+.+++|+.++++.+..+. .....+..+.|+|... .++.++-||.|-|
T Consensus 247 k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p---~~~nW~fdv~w~pr~P~~~A~asfdgkI~I 323 (1049)
T KOG0307|consen 247 KILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP---AQGNWCFDVQWCPRNPSVMAAASFDGKISI 323 (1049)
T ss_pred hhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC---CCCcceeeeeecCCCcchhhhheeccceee
Confidence 5568999999999999987 689999999999999999999888774 3457899999999876 7888899999999
Q ss_pred eeccc
Q 007283 260 WDISE 264 (609)
Q Consensus 260 wd~~~ 264 (609)
+.+..
T Consensus 324 ~sl~~ 328 (1049)
T KOG0307|consen 324 YSLQG 328 (1049)
T ss_pred eeeec
Confidence 99864
No 179
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.72 E-value=3.5e-15 Score=133.28 Aligned_cols=236 Identities=22% Similarity=0.325 Sum_probs=167.2
Q ss_pred EEeecCCCCeEEEeC-CCEEEEEeCCCCc------cccccccC-------CCCcEEEEE-------CCCCCEEEEEeCCC
Q 007283 21 LISGHPKSNSILYTN-GRSVIILDLSNPL------QVSIYGEH-------AYPATVARF-------SPNGEWIASADVSG 79 (609)
Q Consensus 21 ~~~~~~~~~~l~~~~-~~~~~i~~~~~~~------~~~~~~~h-------~~~v~~~~~-------sp~g~~las~~~d~ 79 (609)
....+|||..|+... .+.+.+|.+.... ....+..| .+.|....+ .|+..++|+.+.+.
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~ 133 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ 133 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence 456899999887764 6888999874211 11111111 233544443 48899999999999
Q ss_pred cEEEEcCCCCceeeEEEeec--cc---ceeEEEECCCCCEEEEEECCCCcceEEEEEcCC-CCe--eEEE-----ecCCc
Q 007283 80 TVRIWGAHNDHVLKKEFRVL--SG---RIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDS-GTN--VGEF-----DGHSR 146 (609)
Q Consensus 80 ~i~vWd~~~~~~~~~~~~~~--~~---~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~-~~~--~~~~-----~~h~~ 146 (609)
-|.+||.-+++ ++..++.. .. .--+++|+|||.+|++. . +..+++++... +.. ...- .+..+
T Consensus 134 PIh~wdaftG~-lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-y---krcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 134 PIHLWDAFTGK-LRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-Y---KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred ceeeeeccccc-cccchhhhhhHHhhhhheeEEecCCCCeEeec-c---cceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 99999999876 44445543 22 34579999999999973 2 23577777643 211 1111 13356
Q ss_pred cEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCcc-cc
Q 007283 147 RVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSS-DKKGIIYDGKTADK-IG 224 (609)
Q Consensus 147 ~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~-d~~i~iwd~~~~~~-~~ 224 (609)
-+.+++|+|.+...+|.|+....+-+|..........+.||.+.|+.+.|.+||+.|.+|+. |-.|..||++.... +.
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~ 288 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVY 288 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhh
Confidence 67889999999878999999888888876666666777899999999999999999998875 77899999876543 22
Q ss_pred ccCcCCCCcc-ceEEE--EECCCCCeEEEEeCCCcEEEeeccc
Q 007283 225 ELSPEDGHKG-SVYAV--SWSPDGKQVLTASADKSAKVWDISE 264 (609)
Q Consensus 225 ~~~~~~~h~~-~V~~l--~~spd~~~l~s~s~d~~i~iwd~~~ 264 (609)
.+ .+|.+ .-..| ...|+++.|++|+.||.|++||++.
T Consensus 289 ~L---~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 289 AL---ERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred hh---hhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 22 34544 22333 4468899999999999999999874
No 180
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.72 E-value=3.8e-17 Score=162.74 Aligned_cols=240 Identities=22% Similarity=0.289 Sum_probs=176.9
Q ss_pred ccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEE
Q 007283 52 IYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFM 131 (609)
Q Consensus 52 ~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~ 131 (609)
.+.||..-|+|++|...|+||.+|+.|..++||..++..++
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l--------------------------------------- 225 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL--------------------------------------- 225 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhh---------------------------------------
Confidence 36799999999999999999999999999999997665422
Q ss_pred cCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCc
Q 007283 132 WDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKK 211 (609)
Q Consensus 132 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~ 211 (609)
++..||.+.|+.++.+..+. ++|+++.|..|++|-.+.+..+..+.||.+.|++++|+|-- +.+.||+
T Consensus 226 -------As~rGhs~ditdlavs~~n~-~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt 293 (1113)
T KOG0644|consen 226 -------ASCRGHSGDITDLAVSSNNT-MIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGT 293 (1113)
T ss_pred -------ccCCCCccccchhccchhhh-hhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCc
Confidence 23457888888888876654 59999999999999999988888999999999999999963 7789999
Q ss_pred EEEEeCCCCccccccCcC-CCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEE
Q 007283 212 GIIYDGKTADKIGELSPE-DGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL 290 (609)
Q Consensus 212 i~iwd~~~~~~~~~~~~~-~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (609)
+++||.+-.-.+..-.+. ......+.++-|...+..++|++.|+.-+.|.+.........-.+ +...
T Consensus 294 ~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif------------~t~s 361 (1113)
T KOG0644|consen 294 CRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIF------------VTRS 361 (1113)
T ss_pred eEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEE------------Eecc
Confidence 999998732222221111 122356888889999999999999999999976421000000000 0000
Q ss_pred -EcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecC
Q 007283 291 -WQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQG 355 (609)
Q Consensus 291 -~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~ 355 (609)
..+.+.+++-.+-.+.+|++.+. ...+.+.+|...+..+.+++.++.+..+++.||...+|+.-
T Consensus 362 sd~~~~~~~ar~~~~~~vwnl~~g-~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~ 426 (1113)
T KOG0644|consen 362 SDLSSIVVTARNDHRLCVWNLYTG-QLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIW 426 (1113)
T ss_pred ccccccceeeeeeeEeeeeecccc-hhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecc
Confidence 00123334444445566765443 23456789999999999999988999999999999999753
No 181
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=9.4e-16 Score=138.03 Aligned_cols=189 Identities=18% Similarity=0.226 Sum_probs=138.4
Q ss_pred CCCEEEEEeCCCCccccccccCCCCcEEEEECC--CCCEEEEEeCCCcEEEEcCCCCc-eeeEEEeecc-cceeEEEECC
Q 007283 35 NGRSVIILDLSNPLQVSIYGEHAYPATVARFSP--NGEWIASADVSGTVRIWGAHNDH-VLKKEFRVLS-GRIDDLQWSP 110 (609)
Q Consensus 35 ~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp--~g~~las~~~d~~i~vWd~~~~~-~~~~~~~~~~-~~v~~~~~sp 110 (609)
.-+.+.|||..++..+..+.+|.+-++.++|.. .+..+.+++.||+||+||+.... .-+..+..++ .+..+++-.-
T Consensus 48 Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nc 127 (376)
T KOG1188|consen 48 SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNC 127 (376)
T ss_pred cCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccC
Confidence 446899999999999999999999999999977 56789999999999999997643 2223344444 2333333332
Q ss_pred CCCEEEEEECCCCcc--eEEEEEcCCCCe-eEE-EecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCc---eeee
Q 007283 111 DGLRIVACGDGKGKS--LVRAFMWDSGTN-VGE-FDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFK---FKLS 183 (609)
Q Consensus 111 dg~~l~~~~~~~~~~--~~~~~~~~~~~~-~~~-~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~---~~~~ 183 (609)
...++++|.-.... .+.+|+|....+ ++. ...|.+.|+++.|+|.++..+++|+.||.+.++|...-. ....
T Consensus 128 -k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~ 206 (376)
T KOG1188|consen 128 -KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLH 206 (376)
T ss_pred -cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHH
Confidence 34566666333332 355677766554 554 468999999999999999999999999999999864221 1112
Q ss_pred ccCcccceEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCcccc
Q 007283 184 HRGHSNFVNCVRFSPDG-SKFISVSSDKKGIIYDGKTADKIG 224 (609)
Q Consensus 184 ~~~h~~~v~~l~~s~dg-~~l~s~~~d~~i~iwd~~~~~~~~ 224 (609)
.-.|...|.++.|..++ ++|.+-+...+..+|+.+.+....
T Consensus 207 viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~ 248 (376)
T KOG1188|consen 207 VINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEET 248 (376)
T ss_pred hhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhh
Confidence 23567789999999887 357888899999999988876443
No 182
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=2.1e-15 Score=154.25 Aligned_cols=301 Identities=20% Similarity=0.278 Sum_probs=195.1
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECC--CCCeEEEEeCCCcEEEeecccCC-
Q 007283 190 FVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSP--DGKQVLTASADKSAKVWDISEDN- 266 (609)
Q Consensus 190 ~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~~~l~s~s~d~~i~iwd~~~~~- 266 (609)
+-..+.|+|-...++++.+.-.|++||++.++.+..+.........|..+.+-. |..++++++.||.||||+--...
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 456788999888899888888999999999998877754434456799999876 45689999999999999743221
Q ss_pred -CCceEEEeccCC--CCCccceEEEEEEc--CCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEE
Q 007283 267 -HGKLKKTLTPSG--SGGVDDMLVGCLWQ--NDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVIL 341 (609)
Q Consensus 267 -~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 341 (609)
..++......-. .......-....|+ ...+++.+....|++|+........-...+-...|+++......+++++
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~ 1225 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIA 1225 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEE
Confidence 122222221110 00011111334565 4467777778889999975432111112234445666655444468999
Q ss_pred EEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCC
Q 007283 342 SSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYP 421 (609)
Q Consensus 342 t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (609)
.|-.||.|+++|...... .+ .+..|
T Consensus 1226 AGfaDGsvRvyD~R~a~~-------ds-------------------~v~~~----------------------------- 1250 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAPP-------DS-------------------LVCVY----------------------------- 1250 (1387)
T ss_pred EeecCCceEEeecccCCc-------cc-------------------cceee-----------------------------
Confidence 999999999997532110 00 00000
Q ss_pred cEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCC-EEEEEeCCCcEEEEEecCCeeeeeEEEecCC--C-ceEEE
Q 007283 422 ELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGS-EAIIGSQDGKLRVYSIRGDTLTEEAVLEKHR--G-AVSVI 497 (609)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~-~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~--~-~i~~v 497 (609)
+.++ -..+|..+.+-++|- .+++|+.||.|++||++............|- | ..+++
T Consensus 1251 --------------R~h~------~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal 1310 (1387)
T KOG1517|consen 1251 --------------REHN------DVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTAL 1310 (1387)
T ss_pred --------------cccC------CcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceee
Confidence 0000 001234444555443 4999999999999999864322222223333 4 59999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEccCCceEEe-----eecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCC
Q 007283 498 RYSPDVSMFASGDVNREAIVWDRVSREVKLK-----NMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKP 566 (609)
Q Consensus 498 ~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~-----~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~ 566 (609)
..++.-..+|+|+. +.++||++.+...... .+......+.|++|+|---+||.|+.|.+|.||....+
T Consensus 1311 ~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1311 TVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred eeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 99999999999999 9999999866543211 11223456899999999999999999999999987643
No 183
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.70 E-value=9.2e-16 Score=133.18 Aligned_cols=69 Identities=30% Similarity=0.505 Sum_probs=62.4
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEc
Q 007283 450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDR 520 (609)
Q Consensus 450 ~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~ 520 (609)
+..+.+-||++.+|+++.|++||+|+.++. ....+++-|.+.|++++|+|+...+|+||.|.+|-+|++
T Consensus 254 v~gvrIRpD~KIlATAGWD~RiRVyswrtl--~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 254 VSGVRIRPDGKILATAGWDHRIRVYSWRTL--NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ccceEEccCCcEEeecccCCcEEEEEeccC--CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 556778899999999999999999998754 346789999999999999999999999999999999985
No 184
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=3.7e-15 Score=136.20 Aligned_cols=170 Identities=17% Similarity=0.196 Sum_probs=128.7
Q ss_pred cccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEc
Q 007283 53 YGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMW 132 (609)
Q Consensus 53 ~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 132 (609)
+.+|.+-|+++.||.+|++||+|+.|..++||.++..- ..+
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~-~~k-------------------------------------- 92 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELM-VRK-------------------------------------- 92 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHH-hhc--------------------------------------
Confidence 45899999999999999999999999999999875421 000
Q ss_pred CCCCeeEEE-ecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeecc--CcccceEEEEEcCCCCEEEEEeCC
Q 007283 133 DSGTNVGEF-DGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHR--GHSNFVNCVRFSPDGSKFISVSSD 209 (609)
Q Consensus 133 ~~~~~~~~~-~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~--~h~~~v~~l~~s~dg~~l~s~~~d 209 (609)
..++++.. ..|...|.+++|...+.+ +.+|+.++++...|+++.+....+. ...+.|..+..+|-.+.|++.+.+
T Consensus 93 -~~KPI~~~~~~H~SNIF~L~F~~~N~~-~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~ 170 (609)
T KOG4227|consen 93 -TPKPIGVMEHPHRSNIFSLEFDLENRF-LYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRA 170 (609)
T ss_pred -CCCCceeccCccccceEEEEEccCCee-EecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecC
Confidence 01112212 245678999999877764 8899999999999999877655543 334589999999999999999999
Q ss_pred CcEEEEeCCCCc-cccccCcCCCCccceEEEEECCCCC-eEEEEeCCCcEEEeeccc
Q 007283 210 KKGIIYDGKTAD-KIGELSPEDGHKGSVYAVSWSPDGK-QVLTASADKSAKVWDISE 264 (609)
Q Consensus 210 ~~i~iwd~~~~~-~~~~~~~~~~h~~~V~~l~~spd~~-~l~s~s~d~~i~iwd~~~ 264 (609)
+.+.+||.+... .+..+- ..........+-|+|... +|++.+..+-+.+||.+.
T Consensus 171 ~~V~~~D~Rd~~~~~~~~~-~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~ 226 (609)
T KOG4227|consen 171 KLVSFIDNRDRQNPISLVL-PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRM 226 (609)
T ss_pred ceEEEEeccCCCCCCceee-ecCCCccceeeeecCCCceeEEeccccCCCCceeecc
Confidence 999999987654 222221 123445678899999764 777888888999999863
No 185
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=2.9e-15 Score=152.57 Aligned_cols=212 Identities=17% Similarity=0.193 Sum_probs=147.9
Q ss_pred CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCC---CcEEEEcCCCCceeeEEEeecccceeEEEECCCCC
Q 007283 37 RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVS---GTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGL 113 (609)
Q Consensus 37 ~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d---~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~ 113 (609)
..+.++|...... ..+..|.+.+..++|||||++||.++.+ .+|.+||+.+++.. .+....+....++|||||+
T Consensus 184 ~~i~i~d~dg~~~-~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~--~l~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 184 YEVRVADYDGFNQ-FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK--VVASFRGHNGAPAFSPDGS 260 (429)
T ss_pred EEEEEECCCCCCc-eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE--EEecCCCccCceeECCCCC
Confidence 4788999865554 4567788899999999999999987643 46999999876521 2233334456789999999
Q ss_pred EEEEEECCCCcceEEEEEcCC-CCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCC--CceeeeccCcccc
Q 007283 114 RIVACGDGKGKSLVRAFMWDS-GTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP--FKFKLSHRGHSNF 190 (609)
Q Consensus 114 ~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~--~~~~~~~~~h~~~ 190 (609)
+|+.+.+..+. .++|.++. +.....+..+...+....|+|++..++.+...++..++|+... .... .+ ++..
T Consensus 261 ~La~~~~~~g~--~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~-~l-~~~~- 335 (429)
T PRK01742 261 RLAFASSKDGV--LNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS-LV-GGRG- 335 (429)
T ss_pred EEEEEEecCCc--EEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE-Ee-cCCC-
Confidence 99987643332 45666653 2334556667777889999999987666666777778886432 2221 12 3333
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283 191 VNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS 263 (609)
Q Consensus 191 v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~ 263 (609)
.+..|+|||+.|+.++.++ +.+||..+++... +.. .+ ...++.|+|||++|+.++.++...+|++.
T Consensus 336 -~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~-lt~--~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 336 -YSAQISADGKTLVMINGDN-VVKQDLTSGSTEV-LSS--TF--LDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred -CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEE-ecC--CC--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 4578999999998887765 5568988776432 211 11 23568899999999999999988888753
No 186
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.69 E-value=2.1e-16 Score=157.53 Aligned_cols=281 Identities=21% Similarity=0.252 Sum_probs=198.0
Q ss_pred EecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 007283 141 FDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTA 220 (609)
Q Consensus 141 ~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~ 220 (609)
+.+|...|+|..|...+.+ |.+|+.|..+++|..++..+....+||...|+.++.+.+.-++++++.|..|++|-..++
T Consensus 186 LlgH~naVyca~fDrtg~~-Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~ 264 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRY-IITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG 264 (1113)
T ss_pred HHhhhhheeeeeeccccce-EeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence 4589999999999999975 999999999999999998898999999999999999999889999999999999999998
Q ss_pred ccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEE
Q 007283 221 DKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVS 300 (609)
Q Consensus 221 ~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (609)
..+..+ .||++.|++++|+|.. +.+.||++++||.+-. ..+ +.+..
T Consensus 265 ~pvsvL---rghtgavtaiafsP~~----sss~dgt~~~wd~r~~---~~~--y~prp---------------------- 310 (1113)
T KOG0644|consen 265 APVSVL---RGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLE---PRI--YVPRP---------------------- 310 (1113)
T ss_pred chHHHH---hccccceeeeccCccc----cCCCCCceEecccccc---ccc--cCCCC----------------------
Confidence 877655 5999999999999975 7788999999997511 000 00000
Q ss_pred cCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcE
Q 007283 301 LGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEI 380 (609)
Q Consensus 301 ~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (609)
..+.+. +-+..+.+. .+..-+.|++.|+.-+.|..... +...
T Consensus 311 -----------------~~~~~~-~~~~s~~~~-~~~~~f~Tgs~d~ea~n~e~~~l----------------~~~~--- 352 (1113)
T KOG0644|consen 311 -----------------LKFTEK-DLVDSILFE-NNGDRFLTGSRDGEARNHEFEQL----------------AWRS--- 352 (1113)
T ss_pred -----------------CCcccc-cceeeeecc-ccccccccccCCcccccchhhHh----------------hhhc---
Confidence 000000 111122221 22345778888887776632100 0000
Q ss_pred EEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCC
Q 007283 381 VTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGS 460 (609)
Q Consensus 381 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~ 460 (609)
..+.+.+.. +--..
T Consensus 353 -----------------------------------------~~lif~t~s-------------------------sd~~~ 366 (1113)
T KOG0644|consen 353 -----------------------------------------NLLIFVTRS-------------------------SDLSS 366 (1113)
T ss_pred -----------------------------------------cceEEEecc-------------------------ccccc
Confidence 000000000 00002
Q ss_pred EEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCE-EEEEeCCCeEEEEEccCCceEEeeecCCCCceEE
Q 007283 461 EAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSM-FASGDVNREAIVWDRVSREVKLKNMLYHTARINC 539 (609)
Q Consensus 461 ~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~-l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~ 539 (609)
+.+++-.+-.+.+|++..+.+ ...+.+|...+..+.++|-+.. ..+++.||...|||+-.+........+|.. +..
T Consensus 367 ~~~~ar~~~~~~vwnl~~g~l--~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~k-l~d 443 (1113)
T KOG0644|consen 367 IVVTARNDHRLCVWNLYTGQL--LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGK-LVD 443 (1113)
T ss_pred cceeeeeeeEeeeeecccchh--hhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccce-eec
Confidence 344445566778898877765 3567889999999999997654 558999999999998766543334455554 446
Q ss_pred EEECCCCcEEEEEeCCCeEEEEEc
Q 007283 540 LAWSPNNSMVATGSLDTCVIIYEI 563 (609)
Q Consensus 540 l~~s~d~~~l~s~s~D~~v~vw~~ 563 (609)
.+||+||..++....-|.+.+...
T Consensus 444 ~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 444 GKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred cccCCCCceEecCCCCCceEEecc
Confidence 699999999999988899888864
No 187
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=7.3e-16 Score=147.65 Aligned_cols=267 Identities=16% Similarity=0.295 Sum_probs=168.9
Q ss_pred eeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-----ccccccCcCCCCccceEEEEECCCCCeEEEEeCC
Q 007283 180 FKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTA-----DKIGELSPEDGHKGSVYAVSWSPDGKQVLTASAD 254 (609)
Q Consensus 180 ~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d 254 (609)
...++..|.+.|..++|.|-...|++|+.|+++.+|+.+.. ..+.++....+|.++|.|++..+.++.+++||.|
T Consensus 286 ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~D 365 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGID 365 (577)
T ss_pred eeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccC
Confidence 34456778899999999999999999999999999998321 1122222346899999999999999999999999
Q ss_pred CcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEec
Q 007283 255 KSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLN 334 (609)
Q Consensus 255 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 334 (609)
|+|+.|++..... +. . ..+.......+.||...|+.++++.
T Consensus 366 g~I~~w~~p~n~d--------p~---d----------------------------s~dp~vl~~~l~Ghtdavw~l~~s~ 406 (577)
T KOG0642|consen 366 GTIRCWNLPPNQD--------PD---D----------------------------SYDPSVLSGTLLGHTDAVWLLALSS 406 (577)
T ss_pred ceeeeeccCCCCC--------cc---c----------------------------ccCcchhccceeccccceeeeeecc
Confidence 9999998742100 00 0 0000111235779999999999885
Q ss_pred CCCCEEEEEecCCcEEEEecCccccceecccccc-ceeEeeeeCCc--EEEEeccceEEEEeccCCccccccccccCCCC
Q 007283 335 IDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENS-QIKCFAAIEEE--IVTSGFDNKIWRVSLQGDQCGYANSIDIGSQP 411 (609)
Q Consensus 335 ~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~ 411 (609)
.+..+++|+.||++++|.........+...... ....+...... ...+++ ......+.. ++. .
T Consensus 407 -~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~--~~~~~~~~~--------~ev---~ 472 (577)
T KOG0642|consen 407 -TKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASF--RFGYTSIDD--------MEV---V 472 (577)
T ss_pred -cccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhc--ccccccchh--------hhh---h
Confidence 346799999999999997654432111111100 00111111100 000000 000000000 000 0
Q ss_pred ceeEeeccCCcEEEEE--ecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEec
Q 007283 412 KDLSVALHYPELVLVS--TDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEK 489 (609)
Q Consensus 412 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~ 489 (609)
. ...++. ...+.. ..-.+.-+...|.+.+.+++-.|+.|+++|...+.+. .....
T Consensus 473 s---------~~~~~~s~~~~~~~------------~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l--~s~~a 529 (577)
T KOG0642|consen 473 S---------DLLIFESSASPGPR------------RYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKIL--HSMVA 529 (577)
T ss_pred h---------heeeccccCCCccc------------ccCccceEEecCCCCeeEecccCCceecccccccccc--hheee
Confidence 0 000000 000000 0012344556888899999999999999998877653 44568
Q ss_pred CCCceEEEEECCCCCEEEEEeCCCeEEEEEccC
Q 007283 490 HRGAVSVIRYSPDVSMFASGDVNREAIVWDRVS 522 (609)
Q Consensus 490 h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~ 522 (609)
|...++++++.|+|-+|++++.|+.+++|.+..
T Consensus 530 ~~~svtslai~~ng~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 530 HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred ccceecceeecCCCceEEeecCCceeehhhccc
Confidence 999999999999999999999999999998644
No 188
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.69 E-value=2.9e-13 Score=133.70 Aligned_cols=283 Identities=12% Similarity=0.086 Sum_probs=168.3
Q ss_pred EEEEecCCCeEEEEeCCC-Cc--eeeeccCcccceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCccccccCcCCCCccc
Q 007283 160 RIATCGEDFLVNFYEGPP-FK--FKLSHRGHSNFVNCVRFSPDGSKFISVS-SDKKGIIYDGKTADKIGELSPEDGHKGS 235 (609)
Q Consensus 160 ~i~t~~~d~~i~~~~~~~-~~--~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~h~~~ 235 (609)
++++.+.++.|.+|+..+ ++ ....+. +......++++|++++|++++ .++.+.+|+......+...... ...+.
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~ 81 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGS 81 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCC
Confidence 345557788899998753 33 222332 334577889999999876664 5788999988632112111110 12234
Q ss_pred eEEEEECCCCCeEEEEeC-CCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCC
Q 007283 236 VYAVSWSPDGKQVLTASA-DKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLE 314 (609)
Q Consensus 236 V~~l~~spd~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~ 314 (609)
...+.|+|++++|++++. ++.|.+|+++.. +.......
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~--g~~~~~~~--------------------------------------- 120 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKD--GIPVAPIQ--------------------------------------- 120 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCC--CCCCCcee---------------------------------------
Confidence 678999999998888764 789999998531 11100000
Q ss_pred CCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEec
Q 007283 315 KSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSL 394 (609)
Q Consensus 315 ~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 394 (609)
.+. +......+++++....++++...++.|.+|+.+... .........
T Consensus 121 ----~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g--~l~~~~~~~------------------------- 168 (330)
T PRK11028 121 ----IIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG--HLVAQEPAE------------------------- 168 (330)
T ss_pred ----ecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC--cccccCCCc-------------------------
Confidence 000 001122344444333445666678999999764310 000000000
Q ss_pred cCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeC-CCcEEE
Q 007283 395 QGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQ-DGKLRV 473 (609)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~-dg~i~i 473 (609)
. ..........++++|||+++++.+. +++|.+
T Consensus 169 -------------------~----------------------------~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v 201 (330)
T PRK11028 169 -------------------V----------------------------TTVEGAGPRHMVFHPNQQYAYCVNELNSSVDV 201 (330)
T ss_pred -------------------e----------------------------ecCCCCCCceEEECCCCCEEEEEecCCCEEEE
Confidence 0 0000012345789999999988876 899999
Q ss_pred EEecC--CeeeeeEEEecC------CCceEEEEECCCCCEEEEEeC-CCeEEEEEccCCceEEeeecCC---CCceEEEE
Q 007283 474 YSIRG--DTLTEEAVLEKH------RGAVSVIRYSPDVSMFASGDV-NREAIVWDRVSREVKLKNMLYH---TARINCLA 541 (609)
Q Consensus 474 w~~~~--~~~~~~~~~~~h------~~~i~~v~~s~~~~~l~s~s~-d~~v~iwd~~~~~~~~~~~~~h---~~~i~~l~ 541 (609)
|+++. +.+.....+..+ ......+.++||++++.++.. ++.|.+|++......++ +..+ ......++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~-~~~~~~~~~~p~~~~ 280 (330)
T PRK11028 202 WQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLS-FEGHQPTETQPRGFN 280 (330)
T ss_pred EEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEE-EeEEEeccccCCceE
Confidence 99973 333222222211 122346889999999888854 78999999854432221 1112 12456899
Q ss_pred ECCCCcEEEEEeC-CCeEEEEEcCC
Q 007283 542 WSPNNSMVATGSL-DTCVIIYEIDK 565 (609)
Q Consensus 542 ~s~d~~~l~s~s~-D~~v~vw~~~~ 565 (609)
|+|||++|+++.. +++|.+|+++.
T Consensus 281 ~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 281 IDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred ECCCCCEEEEEEccCCcEEEEEEcC
Confidence 9999999998775 89999999864
No 189
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.66 E-value=3e-13 Score=133.60 Aligned_cols=269 Identities=10% Similarity=0.100 Sum_probs=166.2
Q ss_pred CCCEEEEEeCCC-Cc--cccccccCCCCcEEEEECCCCCEEEEEe-CCCcEEEEcCCC-CceeeEEEeecccceeEEEEC
Q 007283 35 NGRSVIILDLSN-PL--QVSIYGEHAYPATVARFSPNGEWIASAD-VSGTVRIWGAHN-DHVLKKEFRVLSGRIDDLQWS 109 (609)
Q Consensus 35 ~~~~~~i~~~~~-~~--~~~~~~~h~~~v~~~~~sp~g~~las~~-~d~~i~vWd~~~-~~~~~~~~~~~~~~v~~~~~s 109 (609)
.++.|.+|++.+ ++ ....+. +.+....++++|+|++|+.++ .++.|.+|++.. ++..........+....++|+
T Consensus 10 ~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~ 88 (330)
T PRK11028 10 ESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTD 88 (330)
T ss_pred CCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEEC
Confidence 357899999953 32 223232 345678899999999987654 588999999873 222111111123456789999
Q ss_pred CCCCEEEEEECCCCcceEEEEEcCCCC----eeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCC-ceee--
Q 007283 110 PDGLRIVACGDGKGKSLVRAFMWDSGT----NVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF-KFKL-- 182 (609)
Q Consensus 110 pdg~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~-~~~~-- 182 (609)
|||++|+++..+.+ .+.++..+... .+..+. +......++++|++.+.+++...++.|.+|+..+. ....
T Consensus 89 ~~g~~l~v~~~~~~--~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~ 165 (330)
T PRK11028 89 HQGRFLFSASYNAN--CVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE 165 (330)
T ss_pred CCCCEEEEEEcCCC--eEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC
Confidence 99999998875432 35566665321 222222 22345678899999987788888899999997652 2210
Q ss_pred ----eccCcccceEEEEEcCCCCEEEEEeC-CCcEEEEeCCC--Cc--cccccCcCC---CCccceEEEEECCCCCeEEE
Q 007283 183 ----SHRGHSNFVNCVRFSPDGSKFISVSS-DKKGIIYDGKT--AD--KIGELSPED---GHKGSVYAVSWSPDGKQVLT 250 (609)
Q Consensus 183 ----~~~~h~~~v~~l~~s~dg~~l~s~~~-d~~i~iwd~~~--~~--~~~~~~~~~---~h~~~V~~l~~spd~~~l~s 250 (609)
... .......+.|+|+|++++++.. ++.+.+|+... ++ .+..+.... .+......+.|+|++++|++
T Consensus 166 ~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv 244 (330)
T PRK11028 166 PAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYA 244 (330)
T ss_pred CCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEE
Confidence 111 1233568899999999887776 89999999863 22 122221110 11223346889999999888
Q ss_pred EeC-CCcEEEeecccCCC-CceEEEeccCCCCCccceEEEEEEcCCeEEEEEc-CCcEEEEeCCC
Q 007283 251 ASA-DKSAKVWDISEDNH-GKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSL-GGTISIFSAND 312 (609)
Q Consensus 251 ~s~-d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~i~~~~~~~ 312 (609)
+.. ++.|.+|++..... .+....... +. ... .+.+..++.+++++.. ++++.+|..+.
T Consensus 245 ~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~-~p~--~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 245 CDRTASLISVFSVSEDGSVLSFEGHQPT-ET-QPR--GFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred ecCCCCeEEEEEEeCCCCeEEEeEEEec-cc-cCC--ceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 854 78999999864311 112222211 10 011 1233345667776654 78899998653
No 190
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1.3e-14 Score=130.86 Aligned_cols=184 Identities=18% Similarity=0.287 Sum_probs=136.4
Q ss_pred eEEEEEcCCCCeeEEEecCCccEEEEEEeeC-CCeEEEEecCCCeEEEEeCCCCce--eeeccCcc-cceEEEEEcCCCC
Q 007283 126 LVRAFMWDSGTNVGEFDGHSRRVLSCAFKPS-RPFRIATCGEDFLVNFYEGPPFKF--KLSHRGHS-NFVNCVRFSPDGS 201 (609)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~-~~~~i~t~~~d~~i~~~~~~~~~~--~~~~~~h~-~~v~~l~~s~dg~ 201 (609)
-+++++|.++..+..|+++..-+..+.|... ++..+.+|+.||.|++||.+.... .+.+.+|. .+..|++..-.++
T Consensus 51 sv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ 130 (376)
T KOG1188|consen 51 SVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKN 130 (376)
T ss_pred eEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCC
Confidence 3789999999999999999999999999764 666799999999999999876543 33345555 4667777765677
Q ss_pred EEEEEeC----CCcEEEEeCCCCcc-ccccCcCCCCccceEEEEECCCC-CeEEEEeCCCcEEEeecccCCCCceEEEec
Q 007283 202 KFISVSS----DKKGIIYDGKTADK-IGELSPEDGHKGSVYAVSWSPDG-KQVLTASADKSAKVWDISEDNHGKLKKTLT 275 (609)
Q Consensus 202 ~l~s~~~----d~~i~iwd~~~~~~-~~~~~~~~~h~~~V~~l~~spd~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~ 275 (609)
.+++|+. +-.+.+||++..+. +..+. ..|..-|++++|+|.. .+|+|||.||.+.+||+..++..
T Consensus 131 ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~--eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee------- 201 (376)
T KOG1188|consen 131 IIACGTELTRSDASVVLWDVRSEQQLLRQLN--ESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE------- 201 (376)
T ss_pred eEEeccccccCceEEEEEEeccccchhhhhh--hhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch-------
Confidence 7887753 66789999998877 66654 4799999999999954 68999999999999998642110
Q ss_pred cCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecC
Q 007283 276 PSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQG 355 (609)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~ 355 (609)
+. ....-.|...|..+.|+...-+.+.+-++..+..+|+++
T Consensus 202 --------Da-------------------------------L~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele 242 (376)
T KOG1188|consen 202 --------DA-------------------------------LLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELE 242 (376)
T ss_pred --------hh-------------------------------HHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEcc
Confidence 00 001112444566677764433468888899999999776
Q ss_pred cc
Q 007283 356 IG 357 (609)
Q Consensus 356 ~~ 357 (609)
.+
T Consensus 243 ~~ 244 (376)
T KOG1188|consen 243 DG 244 (376)
T ss_pred CC
Confidence 54
No 191
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1e-14 Score=148.54 Aligned_cols=213 Identities=19% Similarity=0.285 Sum_probs=144.2
Q ss_pred cCceeEEeecCCCCeEEEeC----CCEEEEEeCCCCcc--ccccccCCCCcEEEEECCCCCEEEEEe-CCCcEEEEc--C
Q 007283 16 RGRGILISGHPKSNSILYTN----GRSVIILDLSNPLQ--VSIYGEHAYPATVARFSPNGEWIASAD-VSGTVRIWG--A 86 (609)
Q Consensus 16 ~~~~~~~~~~~~~~~l~~~~----~~~~~i~~~~~~~~--~~~~~~h~~~v~~~~~sp~g~~las~~-~d~~i~vWd--~ 86 (609)
++......++|||+.|+|.. ...+++||+.++.. +..+.+| ...++|||||++|+.++ .+|.++||. .
T Consensus 203 ~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~ 279 (429)
T PRK01742 203 SQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGA 279 (429)
T ss_pred CCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEEC
Confidence 34456889999999999873 24799999987653 2223333 45789999999998754 688877774 4
Q ss_pred CCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecC
Q 007283 87 HNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGE 166 (609)
Q Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~ 166 (609)
.+++ ...+..+...+..++|+|||++|+.+++..+. .++|.++.........++.. ...+|+|++.. ++..+.
T Consensus 280 ~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~--~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~-ia~~~~ 352 (429)
T PRK01742 280 NGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGS--PQVYRMSASGGGASLVGGRG--YSAQISADGKT-LVMING 352 (429)
T ss_pred CCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCC--ceEEEEECCCCCeEEecCCC--CCccCCCCCCE-EEEEcC
Confidence 4443 23455566678899999999999888754332 45676654322112223433 45789999986 555555
Q ss_pred CCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeC--CCCccccccCcCCCCccceEEEEECCC
Q 007283 167 DFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDG--KTADKIGELSPEDGHKGSVYAVSWSPD 244 (609)
Q Consensus 167 d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~--~~~~~~~~~~~~~~h~~~V~~l~~spd 244 (609)
+..+ .||..+++.......+ ....+.|+|||++|++++.++...+|+. .++..+..+. +|.+.+..++|+|-
T Consensus 353 ~~i~-~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~---~~~g~~~~p~wsp~ 426 (429)
T PRK01742 353 DNVV-KQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP---GSDGQVKFPAWSPY 426 (429)
T ss_pred CCEE-EEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc---CCCCCCCCcccCCC
Confidence 6544 4787766544332222 2356789999999999999998887764 3455555553 67788899999985
No 192
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=7.2e-14 Score=127.89 Aligned_cols=298 Identities=16% Similarity=0.178 Sum_probs=196.4
Q ss_pred EEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCC------Cceeeec-cCcccceEEEEEcCCCCEEEEEeCCCcE
Q 007283 140 EFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP------FKFKLSH-RGHSNFVNCVRFSPDGSKFISVSSDKKG 212 (609)
Q Consensus 140 ~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~------~~~~~~~-~~h~~~v~~l~~s~dg~~l~s~~~d~~i 212 (609)
.+.+|.+-|..+.|+.++.+ +++||.|....+|..+. .|.+... ..|...|.|++|.....++.+|+.++++
T Consensus 51 D~~~H~GCiNAlqFS~N~~~-L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRF-LASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhccccceeeeccCCeE-EeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 45689999999999999775 99999999999997432 2333222 3466899999999999999999999999
Q ss_pred EEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCC-CCceEEEeccCCCCCccceEEEEEE
Q 007283 213 IIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDN-HGKLKKTLTPSGSGGVDDMLVGCLW 291 (609)
Q Consensus 213 ~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (609)
+..|+++.+.+..+.. ....+.|+.+..+|....|++.+.++.|.+||.+..+ .+.+
T Consensus 130 I~HDiEt~qsi~V~~~-~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~--------------------- 187 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANE-NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL--------------------- 187 (609)
T ss_pred Eeeecccceeeeeecc-cCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce---------------------
Confidence 9999999888766532 2334589999999999999999999999999987422 1100
Q ss_pred cCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecccccccee
Q 007283 292 QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIK 371 (609)
Q Consensus 292 ~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~ 371 (609)
++.. ...+....+-|++..+.++++.+..+-+-+|+........++.
T Consensus 188 -----~~~A---------------------N~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~------- 234 (609)
T KOG4227|consen 188 -----VLPA---------------------NSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQR------- 234 (609)
T ss_pred -----eeec---------------------CCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhh-------
Confidence 0000 0112233455667778899999998889999754321100000
Q ss_pred EeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCcee
Q 007283 372 CFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVT 451 (609)
Q Consensus 372 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (609)
.... .++.. .....
T Consensus 235 --~~~~---------------~L~~~-------------------------------------------------~~~~M 248 (609)
T KOG4227|consen 235 --SMFK---------------GLPQE-------------------------------------------------NTEWM 248 (609)
T ss_pred --hccc---------------cCccc-------------------------------------------------chhhh
Confidence 0000 00000 00011
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEe-cCC-------CceEEEEECCCCCEEEEEeCCCeEEEEEccC-
Q 007283 452 ASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLE-KHR-------GAVSVIRYSPDVSMFASGDVNREAIVWDRVS- 522 (609)
Q Consensus 452 ~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~-~h~-------~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~- 522 (609)
.+-++|+|..+.+--.-..=.+||+-+..+. +++ .|. -.+.++.|-.|.. +++||.+-.+++|.+-.
T Consensus 249 ~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~---V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 249 GSLWSPSGNQFMSIRRGKCPLYFDFISQRCF---VLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRA 324 (609)
T ss_pred heeeCCCCCeehhhhccCCCEEeeeecccce---eEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCC
Confidence 2334555555444333333344444332221 111 111 1466777865544 99999999999997421
Q ss_pred ---Cc------------------eEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEc
Q 007283 523 ---RE------------------VKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEI 563 (609)
Q Consensus 523 ---~~------------------~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~ 563 (609)
.. ..+..+.+|..-++.+.|+|...+|++++..+.+++|.-
T Consensus 325 ~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 325 NDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred ccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 00 012346789999999999999999999999999999964
No 193
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=7.1e-14 Score=143.30 Aligned_cols=285 Identities=17% Similarity=0.181 Sum_probs=193.5
Q ss_pred ceeEEeecCCCCeEEEeCC-CEEEEEeCCCCccccccccCC---CCcEEEEECC--CCCEEEEEeCCCcEEEEcCC-CC-
Q 007283 18 RGILISGHPKSNSILYTNG-RSVIILDLSNPLQVSIYGEHA---YPATVARFSP--NGEWIASADVSGTVRIWGAH-ND- 89 (609)
Q Consensus 18 ~~~~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~~~~~~~h~---~~v~~~~~sp--~g~~las~~~d~~i~vWd~~-~~- 89 (609)
.|-.+.+||=...++...+ ..+.+||-+.++.+..|..+. ..|+.+.+-. |..++.+|+.||.||||+-. +.
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 4558889988877777664 799999999988877776443 4688888743 56789999999999999644 32
Q ss_pred -c-eeeEEEeeccc-------ceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEe-cCCccEEEEEEeeCCCe
Q 007283 90 -H-VLKKEFRVLSG-------RIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFD-GHSRRVLSCAFKPSRPF 159 (609)
Q Consensus 90 -~-~~~~~~~~~~~-------~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~ 159 (609)
+ .+...+...++ .-.-+.|-....+|++.||- ..+|+|+-+.......+. +...-|+++.-+-....
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~---r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDV---RSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCe---eEEEEEecccceeEeecccCCCccceeecccccCCc
Confidence 1 12222222211 11446788877788888763 367888777766666554 34455777765444445
Q ss_pred EEEEecCCCeEEEEeCCC---CceeeeccCcccc--eEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCccccccCcCCCCc
Q 007283 160 RIATCGEDFLVNFYEGPP---FKFKLSHRGHSNF--VNCVRFSPDGS-KFISVSSDKKGIIYDGKTADKIGELSPEDGHK 233 (609)
Q Consensus 160 ~i~t~~~d~~i~~~~~~~---~~~~~~~~~h~~~--v~~l~~s~dg~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~ 233 (609)
+|+.|-.||.+++||.+. ...+...+.|... |..+.+.+.|- .|++|+.||.|.+||.+.......+.. ..|.
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~i-v~~~ 1301 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTI-VAHW 1301 (1387)
T ss_pred eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccccccee-eecc
Confidence 799999999999999542 2345667888877 99999998776 499999999999999987543333322 2333
Q ss_pred --c-ceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCC--CCCccceEEEEEEcC--CeEEEEEcCCcEE
Q 007283 234 --G-SVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSG--SGGVDDMLVGCLWQN--DFLVIVSLGGTIS 306 (609)
Q Consensus 234 --~-~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~g~i~ 306 (609)
| ..+++..|++...+|+|+. +.|+||++.... +..+.... -+.-.....+..+.+ -++++++.|.++.
T Consensus 1302 ~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~----l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~ 1376 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ----LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVS 1376 (1387)
T ss_pred ccCccceeeeeccCCCeeeecCc-ceEEEEecChhh----hcccccCcccccCcCCCcceeeecchhHhhhhccCCceEE
Confidence 3 5999999999999999998 999999986432 22221110 000000112223333 3677788888899
Q ss_pred EEeCC
Q 007283 307 IFSAN 311 (609)
Q Consensus 307 ~~~~~ 311 (609)
+|...
T Consensus 1377 iYs~~ 1381 (1387)
T KOG1517|consen 1377 IYSCE 1381 (1387)
T ss_pred EeecC
Confidence 88754
No 194
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.62 E-value=4.1e-13 Score=135.67 Aligned_cols=285 Identities=14% Similarity=0.155 Sum_probs=175.0
Q ss_pred CcEEEEeCCCCccccccCcCCCCccceEEEEECCC-CCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEE
Q 007283 210 KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD-GKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVG 288 (609)
Q Consensus 210 ~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (609)
+.+.+|+.+....-... -.-...|+++.|+|. ..+++.|+.+|.|.+||++..... ....
T Consensus 222 ~~~~vW~~~~p~~Pe~~---~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~-~~s~--------------- 282 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELV---LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDT-PPSG--------------- 282 (555)
T ss_pred ceEEEEecCCCCCceEE---EecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCC-CCcc---------------
Confidence 46889998765221111 123568999999995 457778888999999998742110 0000
Q ss_pred EEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEec-CCCCEEEEEecCCcEEEEecCccccceeccccc
Q 007283 289 CLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLN-IDPKVILSSSYDGLIVKWIQGIGYGGKLQRKEN 367 (609)
Q Consensus 289 ~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~ 367 (609)
.......|...++.+.+.. ..+.-+++++.||.|..|+.+.-.. .
T Consensus 283 ---------------------------ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~---P---- 328 (555)
T KOG1587|consen 283 ---------------------------LSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSL---P---- 328 (555)
T ss_pred ---------------------------cccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeecccccc---c----
Confidence 0011234677777776652 2234588888899999995432100 0
Q ss_pred cceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccC
Q 007283 368 SQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLR 447 (609)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (609)
..... . +. ..+ ........
T Consensus 329 ~e~~~--------~-----------~~----------------------~~~--------------------~~~~~~~~ 347 (555)
T KOG1587|consen 329 VEGLL--------L-----------ES----------------------KKH--------------------KGQQSSKA 347 (555)
T ss_pred hhhcc--------c-----------cc----------------------ccc--------------------cccccccc
Confidence 00000 0 00 000 00000001
Q ss_pred CceeEEEEcC-CCCEEEEEeCCCcEEEEEecCCeeee------eEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEc
Q 007283 448 FPVTASAIAP-DGSEAIIGSQDGKLRVYSIRGDTLTE------EAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDR 520 (609)
Q Consensus 448 ~~~~~~~~sp-~g~~l~~gs~dg~i~iw~~~~~~~~~------~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~ 520 (609)
..+++++|.| +-..+++|+.+|.|.-=.-.+..-.. ......|.++|.++.++|-+..+...+.|-+++||..
T Consensus 348 ~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~ 427 (555)
T KOG1587|consen 348 VGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSE 427 (555)
T ss_pred cceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccc
Confidence 2355566655 44568899999988663222111111 1245668899999999999876666666999999985
Q ss_pred cCCceEEeeecCCCCceEEEEECCCC-cEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEcC-CCeEEEEeCC
Q 007283 521 VSREVKLKNMLYHTARINCLAWSPNN-SMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTD-EHSVVSSGED 598 (609)
Q Consensus 521 ~~~~~~~~~~~~h~~~i~~l~~s~d~-~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~l~s~s~D 598 (609)
......+..+..+...|++++|||-- ..++++..||.|-+||+......-.....-+....+.+.|+. +..|+.|.+-
T Consensus 428 ~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~ 507 (555)
T KOG1587|consen 428 DVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDAN 507 (555)
T ss_pred cCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCC
Confidence 53333344455677889999999964 578899999999999985322111111122355566777885 7888899999
Q ss_pred CcEEEEEccC
Q 007283 599 ACVRVWRLTP 608 (609)
Q Consensus 599 ~~i~~W~~~~ 608 (609)
|++.+|+|.+
T Consensus 508 G~~~~~~l~~ 517 (555)
T KOG1587|consen 508 GTTHILKLSE 517 (555)
T ss_pred CcEEEEEcCc
Confidence 9999999953
No 195
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.61 E-value=4.2e-13 Score=139.95 Aligned_cols=177 Identities=15% Similarity=0.176 Sum_probs=120.1
Q ss_pred CccccccccCCCCcEEEEECC-CCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcc
Q 007283 47 PLQVSIYGEHAYPATVARFSP-NGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKS 125 (609)
Q Consensus 47 ~~~~~~~~~h~~~v~~~~~sp-~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~ 125 (609)
|..+..+..|+..|..++.++ ++.+++|||.||+||+|+...-.... ...=..+.|+|.
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~------~s~rS~ltys~~-------------- 1097 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG------GSARSELTYSPE-------------- 1097 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc------ceeeeeEEEecc--------------
Confidence 445566888998888888765 55999999999999999875321100 000112223332
Q ss_pred eEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCC-------ceeee--ccCcccceEEEEE
Q 007283 126 LVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF-------KFKLS--HRGHSNFVNCVRF 196 (609)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~-------~~~~~--~~~h~~~v~~l~~ 196 (609)
..++..+..-+.+. .+|.++.||.|.+..++-- ...+. ..+....|.+-+|
T Consensus 1098 -------------------~sr~~~vt~~~~~~-~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~ 1157 (1431)
T KOG1240|consen 1098 -------------------GSRVEKVTMCGNGD-QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAF 1157 (1431)
T ss_pred -------------------CCceEEEEeccCCC-eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecc
Confidence 23445555555555 4888899999888865431 11111 2222234555566
Q ss_pred cCC-CC-EEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeeccc
Q 007283 197 SPD-GS-KFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE 264 (609)
Q Consensus 197 s~d-g~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~ 264 (609)
... +. .++.+..-+.+..||.+....+.++..... .|.|++++.+|-+.+++.|+..|.+-+||++.
T Consensus 1158 ~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~-hG~vTSi~idp~~~WlviGts~G~l~lWDLRF 1226 (1431)
T KOG1240|consen 1158 TAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR-HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF 1226 (1431)
T ss_pred cccccceeEEEEEeccceEEecchhhhhHHhhhcCcc-ccceeEEEecCCceEEEEecCCceEEEEEeec
Confidence 544 44 678888899999999998887776654333 47899999999999999999999999999973
No 196
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.59 E-value=1.3e-13 Score=123.34 Aligned_cols=163 Identities=19% Similarity=0.302 Sum_probs=131.6
Q ss_pred EeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCC---CeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEE
Q 007283 96 FRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSG---TNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNF 172 (609)
Q Consensus 96 ~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~ 172 (609)
+....++|++.+|++|+..++.+-.+.+ +.++.+... ...++++.|...|+.++|.|..+ +|++|+.|..-.+
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~e---vhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn-rIvtcs~drnayV 81 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHE---VHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN-RIVTCSHDRNAYV 81 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCce---EEEEEecCCCCceeceehhhhCcceeEEeecCCCC-ceeEccCCCCccc
Confidence 4445678999999999999998766543 456666544 35778999999999999999986 6999999999999
Q ss_pred EeCC---CCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccC-cCCCCccceEEEEECCCCCeE
Q 007283 173 YEGP---PFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELS-PEDGHKGSVYAVSWSPDGKQV 248 (609)
Q Consensus 173 ~~~~---~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~h~~~V~~l~~spd~~~l 248 (609)
|..+ +++....+..+.+.++++.|+|.+++||+|+....|.||-.+..+....-+ ..+.+.+.|++++|+|++-+|
T Consensus 82 w~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLl 161 (361)
T KOG1523|consen 82 WTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLL 161 (361)
T ss_pred cccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCccee
Confidence 9763 345556677899999999999999999999999999998766554431100 112467889999999999999
Q ss_pred EEEeCCCcEEEeec
Q 007283 249 LTASADKSAKVWDI 262 (609)
Q Consensus 249 ~s~s~d~~i~iwd~ 262 (609)
+.||.|+..|++..
T Consensus 162 aaGs~D~k~rVfSa 175 (361)
T KOG1523|consen 162 AAGSTDGKCRVFSA 175 (361)
T ss_pred cccccCcceeEEEE
Confidence 99999999999964
No 197
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=3.8e-14 Score=136.05 Aligned_cols=205 Identities=20% Similarity=0.334 Sum_probs=161.6
Q ss_pred ccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCC------c-eeeEEEeecccceeEEEECCCCCEEEEEECCCCc
Q 007283 52 IYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHND------H-VLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGK 124 (609)
Q Consensus 52 ~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~------~-~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~ 124 (609)
.+..|-+.|+.++|.|...-|++++.|+++++|.++.. . .-..+|+.|.++|.+++.++.++++.+.|-+.
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg-- 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG-- 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc--
Confidence 35678889999999999999999999999999999321 1 12357899999999999999999999987443
Q ss_pred ceEEEEEcC-------C---CCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCce-eee-cc-------
Q 007283 125 SLVRAFMWD-------S---GTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKF-KLS-HR------- 185 (609)
Q Consensus 125 ~~~~~~~~~-------~---~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~-~~~-~~------- 185 (609)
.++.|... . ......+.||.+.|+.+++|+... ++++|+.|++++.|+...... .+. ..
T Consensus 367 -~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~-~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 367 -TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD-RLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLS 444 (577)
T ss_pred -eeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc-ceeeecCCceEEeeccCCcCccccCCccccCCcce
Confidence 35555222 1 123456889999999999998876 599999999999997421111 000 00
Q ss_pred --------Cc----------------------------------ccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccc
Q 007283 186 --------GH----------------------------------SNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKI 223 (609)
Q Consensus 186 --------~h----------------------------------~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~ 223 (609)
.| ...++-+..+|.+.+..++..|+.|+++|..+++.+
T Consensus 445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l 524 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKIL 524 (577)
T ss_pred EeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccc
Confidence 00 024566777888888899999999999999999988
Q ss_pred cccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283 224 GELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS 263 (609)
Q Consensus 224 ~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~ 263 (609)
.... .|...|+++++.|+|-+|++++.|+.+++|.+.
T Consensus 525 ~s~~---a~~~svtslai~~ng~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 525 HSMV---AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred hhee---eccceecceeecCCCceEEeecCCceeehhhcc
Confidence 7663 789999999999999999999999999999875
No 198
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=4.3e-14 Score=133.19 Aligned_cols=301 Identities=22% Similarity=0.278 Sum_probs=206.7
Q ss_pred eeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCC--CCeEEEEeCCCcEEE
Q 007283 182 LSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD--GKQVLTASADKSAKV 259 (609)
Q Consensus 182 ~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd--~~~l~s~s~d~~i~i 259 (609)
..+.+|.+.|+.|.|+..|..|+++++|..+.+||+..++....+ ..||...|....|-|. .+.+++++.||.+++
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f--~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF--ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc--ccccccchhhhhccCCCCCcCceeccccCceee
Confidence 456789999999999999999999999999999999988876655 3589999999999884 467999999999998
Q ss_pred eecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCE
Q 007283 260 WDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKV 339 (609)
Q Consensus 260 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 339 (609)
=.+... +.... ...+.-|.+.|.-++..+..+.-
T Consensus 214 s~i~~t--~~~e~--------------------------------------------t~rl~~h~g~vhklav~p~sp~~ 247 (559)
T KOG1334|consen 214 SEILET--GYVEN--------------------------------------------TKRLAPHEGPVHKLAVEPDSPKP 247 (559)
T ss_pred eeeccc--cceec--------------------------------------------ceecccccCccceeeecCCCCCc
Confidence 654321 11100 11233477777778877777889
Q ss_pred EEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeecc
Q 007283 340 ILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALH 419 (609)
Q Consensus 340 ~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (609)
+.|++.|+.+.-.++........ +.| -. .+
T Consensus 248 f~S~geD~~v~~~Dlr~~~pa~~-------~~c----------r~---------------------------------~~ 277 (559)
T KOG1334|consen 248 FLSCGEDAVVFHIDLRQDVPAEK-------FVC----------RE---------------------------------AD 277 (559)
T ss_pred ccccccccceeeeeeccCCccce-------eee----------ec---------------------------------cC
Confidence 99999999987665432210000 000 00 00
Q ss_pred CCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCC-EEEEEeCCCcEEEEEecCCeeee-----eEEEecC---
Q 007283 420 YPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGS-EAIIGSQDGKLRVYSIRGDTLTE-----EAVLEKH--- 490 (609)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~-~l~~gs~dg~i~iw~~~~~~~~~-----~~~~~~h--- 490 (609)
.+. .-....+++.|-.. .+++|+.|.-+|+||.+.-.... ...+..|
T Consensus 278 ~~~------------------------~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~ 333 (559)
T KOG1334|consen 278 EKE------------------------RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVE 333 (559)
T ss_pred Ccc------------------------ceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccc
Confidence 000 01235567777555 78999999999999975432110 1111222
Q ss_pred --CCceEEEEECCCCCEEEEEeCCCeEEEEEccCCc-----------eEEee-ecCCC--CceEEEEE-CCCCcEEEEEe
Q 007283 491 --RGAVSVIRYSPDVSMFASGDVNREAIVWDRVSRE-----------VKLKN-MLYHT--ARINCLAW-SPNNSMVATGS 553 (609)
Q Consensus 491 --~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~-----------~~~~~-~~~h~--~~i~~l~~-s~d~~~l~s~s 553 (609)
.-.|+++.|+.++.-+.++..|-.|++++-.-+. ...+. .++|. ..|.++-| =|...|+++||
T Consensus 334 d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGS 413 (559)
T KOG1334|consen 334 DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGS 413 (559)
T ss_pred cCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecC
Confidence 3468999999888888888889999999522111 11222 56664 45888876 57889999999
Q ss_pred CCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEc
Q 007283 554 LDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRL 606 (609)
Q Consensus 554 ~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~ 606 (609)
.=|-|.+|+-... +++....|....|+|+-=. --..|+|+|-|.-||||.=
T Consensus 414 DCGhIFiW~K~t~--eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 414 DCGHIFIWDKKTG--EIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred ccceEEEEecchh--HHHHHhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence 9999999996542 3333444555588888855 3457899999999999963
No 199
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.57 E-value=5.1e-13 Score=117.91 Aligned_cols=236 Identities=18% Similarity=0.235 Sum_probs=164.1
Q ss_pred eeEEeecCCCC----eEEEeCCCEEEEEeCCCCcc----ccccc-----cCCCCcEEEEECC-CCCEEEEEeCCCcEEEE
Q 007283 19 GILISGHPKSN----SILYTNGRSVIILDLSNPLQ----VSIYG-----EHAYPATVARFSP-NGEWIASADVSGTVRIW 84 (609)
Q Consensus 19 ~~~~~~~~~~~----~l~~~~~~~~~i~~~~~~~~----~~~~~-----~h~~~v~~~~~sp-~g~~las~~~d~~i~vW 84 (609)
++.+.+.|+.. -|+.+.+.-+++|....... ...+. .|..++++..|+. +-++|.+.|-|-|+.||
T Consensus 99 ~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiW 178 (364)
T KOG0290|consen 99 VTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIW 178 (364)
T ss_pred ccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEE
Confidence 34788888763 23445567899999874222 12232 3445677777775 67899999999999999
Q ss_pred cCCCCc--eeeEEEeecccceeEEEECCCCC-EEEEEECCCCcceEEEEEcCCCC---eeEEEecCCccEEEEEEeeCCC
Q 007283 85 GAHNDH--VLKKEFRVLSGRIDDLQWSPDGL-RIVACGDGKGKSLVRAFMWDSGT---NVGEFDGHSRRVLSCAFKPSRP 158 (609)
Q Consensus 85 d~~~~~--~~~~~~~~~~~~v~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~h~~~v~~~~~~p~~~ 158 (609)
|++++. .++.++=.|.++|..++|+.++. .++++|.+.. +|.+++..-. .+.+-.....+...+++.++++
T Consensus 179 die~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGS---vRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDp 255 (364)
T KOG0290|consen 179 DIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGS---VRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDP 255 (364)
T ss_pred EEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCc---EEEEEecccccceEEecCCCCCCcceeeccCcCCc
Confidence 999863 36778888999999999999876 4555664432 5666665422 2222222246788899999998
Q ss_pred eEEEEecCCC-eEEEEeCC-CCceeeeccCcccceEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCcc---ccccCcCCCC
Q 007283 159 FRIATCGEDF-LVNFYEGP-PFKFKLSHRGHSNFVNCVRFSPDG-SKFISVSSDKKGIIYDGKTADK---IGELSPEDGH 232 (609)
Q Consensus 159 ~~i~t~~~d~-~i~~~~~~-~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~h 232 (609)
..+||-..|. .+.+.|.+ +......+++|...|+.++|.|.. ..|++|++|..+.|||+...-. ...+... ..
T Consensus 256 nymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay-~a 334 (364)
T KOG0290|consen 256 NYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAY-TA 334 (364)
T ss_pred hHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhh-hc
Confidence 8888877664 56777765 455677899999999999999984 4899999999999999764322 1111111 23
Q ss_pred ccceEEEEECCCC-CeEEEEeCCCcEEE
Q 007283 233 KGSVYAVSWSPDG-KQVLTASADKSAKV 259 (609)
Q Consensus 233 ~~~V~~l~~spd~-~~l~s~s~d~~i~i 259 (609)
.+.|+.+.|+|.. ..++.+. ++++.+
T Consensus 335 ~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 335 GGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred cceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 5689999999754 4555553 444443
No 200
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.57 E-value=1.9e-13 Score=122.39 Aligned_cols=204 Identities=17% Similarity=0.244 Sum_probs=156.3
Q ss_pred CCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCc--eeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEc-C
Q 007283 57 AYPATVARFSPNGEWIASADVSGTVRIWGAHNDH--VLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMW-D 133 (609)
Q Consensus 57 ~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~--~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~-~ 133 (609)
.++|+|.||++|+..+|.+-....|-|+.....+ ...+++..|...|+.+.|+|.+.+|++++.+++. .+|.. +
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drna---yVw~~~~ 86 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNA---YVWTQPS 86 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCc---cccccCC
Confidence 4689999999999999999999999999876554 3446788899999999999999999999977653 23333 2
Q ss_pred CC--CeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEE--eCCC--CceeeeccCcccceEEEEEcCCCCEEEEEe
Q 007283 134 SG--TNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFY--EGPP--FKFKLSHRGHSNFVNCVRFSPDGSKFISVS 207 (609)
Q Consensus 134 ~~--~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~--~~~~--~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~ 207 (609)
.+ +....+..+.+.++++.|+|.... ||+|+..+.|-++ +.++ +-.+..-+.++..|+++.|+|++-+|+.|+
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~enk-FAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKENK-FAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcCce-EEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence 22 334566788999999999999874 9999999887765 3332 233334456788999999999999999999
Q ss_pred CCCcEEEEeCC-----CCcc---------ccc-cCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeeccc
Q 007283 208 SDKKGIIYDGK-----TADK---------IGE-LSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE 264 (609)
Q Consensus 208 ~d~~i~iwd~~-----~~~~---------~~~-~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~ 264 (609)
.|+..+++... +... ... +.+.....+.|..+.|+|+|..|+-.+.|.++.+-|...
T Consensus 166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG 237 (361)
T ss_pred cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence 99999998632 1100 000 011113457899999999999999999999999988653
No 201
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.57 E-value=1.2e-12 Score=132.30 Aligned_cols=272 Identities=18% Similarity=0.201 Sum_probs=174.4
Q ss_pred eEEEEeCCCC-ceeeeccCcccceEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCcc--ccccCc-CCCCccceEEEEECC
Q 007283 169 LVNFYEGPPF-KFKLSHRGHSNFVNCVRFSPDG-SKFISVSSDKKGIIYDGKTADK--IGELSP-EDGHKGSVYAVSWSP 243 (609)
Q Consensus 169 ~i~~~~~~~~-~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~d~~i~iwd~~~~~~--~~~~~~-~~~h~~~V~~l~~sp 243 (609)
.+.+|+.... .....+ .-...|.|+.|+|.. ..+|.|..+|.|.+||.+.+.. ...+.. ...|...|+.+.|-.
T Consensus 223 ~~~vW~~~~p~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred eEEEEecCCCCCceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 5788886544 222233 235679999999974 5778888999999999987765 222221 236889999999987
Q ss_pred CCCe--EEEEeCCCcEEEeecccCCCCc---eEEEeccCCCC-CccceEEEEEE---cCCeEEEEEcCCcEEEEeCCCCC
Q 007283 244 DGKQ--VLTASADKSAKVWDISEDNHGK---LKKTLTPSGSG-GVDDMLVGCLW---QNDFLVIVSLGGTISIFSANDLE 314 (609)
Q Consensus 244 d~~~--l~s~s~d~~i~iwd~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~g~i~~~~~~~~~ 314 (609)
+..- ++++|.||.|..|+++.-.... +.......+.. .-........+ .+..+++++..|.|..-+-....
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 6554 9999999999999875321100 00000000000 00011112222 25577888888887663222111
Q ss_pred -------CCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccc
Q 007283 315 -------KSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDN 387 (609)
Q Consensus 315 -------~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 387 (609)
+.......|.+.|.++.+++.....+++++ |-++++|..... ..++..
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~---------~~Pl~~--------------- 436 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVI---------ASPLLS--------------- 436 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCC---------CCcchh---------------
Confidence 112245668889999998877777888888 999999954310 000000
Q ss_pred eEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCC-CEEEEEe
Q 007283 388 KIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDG-SEAIIGS 466 (609)
Q Consensus 388 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g-~~l~~gs 466 (609)
.......++++++||-- ..|+++.
T Consensus 437 -------------------------------------------------------~~~~~~~v~~vaWSptrpavF~~~d 461 (555)
T KOG1587|consen 437 -------------------------------------------------------LDSSPDYVTDVAWSPTRPAVFATVD 461 (555)
T ss_pred -------------------------------------------------------hhhccceeeeeEEcCcCceEEEEEc
Confidence 00001226778888844 4688889
Q ss_pred CCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 007283 467 QDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRV 521 (609)
Q Consensus 467 ~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~ 521 (609)
.||.|.+||+...........+-+....+.+.|+++|+.++.|+..|++.+|++.
T Consensus 462 ~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 462 GDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred CCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 9999999999765544434444445667888899999999999999999999974
No 202
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.56 E-value=9.9e-12 Score=118.75 Aligned_cols=238 Identities=13% Similarity=0.188 Sum_probs=154.6
Q ss_pred eeecCCCccCcCceeEEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECC---------CCCEEEEEe
Q 007283 6 ETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSP---------NGEWIASAD 76 (609)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp---------~g~~las~~ 76 (609)
+|-.|.-.-+.-..+.+.+......+..+.+..+.+|.-...........-.+.|...-+ | ....++-++
T Consensus 4 k~~~~~k~r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h-~~~rs~~~g~~~d~~~i~s 82 (737)
T KOG1524|consen 4 KTRICKKNRNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMH-LGGRSSGGGKGSDTLLICS 82 (737)
T ss_pred chhhhhccccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCcccc-ccccccCCCCCcceEEEEc
Confidence 344454444333445666666655555556666666554333332333222333322211 1 123566677
Q ss_pred CCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeE-EEecCCccEEEEEEee
Q 007283 77 VSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVG-EFDGHSRRVLSCAFKP 155 (609)
Q Consensus 77 ~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~p 155 (609)
.||.+.|-.- .+++ .+....|.+.+.+-+|+|||.-|+++|.+. .+.+|.....+. ++.....+|+|++|.|
T Consensus 83 ~DGkf~il~k-~~rV-E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG-----~iKiWSrsGMLRStl~Q~~~~v~c~~W~p 155 (737)
T KOG1524|consen 83 NDGRFVILNK-SARV-ERSISAHAAAISSGRWSPDGAGLLTAGEDG-----VIKIWSRSGMLRSTVVQNEESIRCARWAP 155 (737)
T ss_pred CCceEEEecc-cchh-hhhhhhhhhhhhhcccCCCCceeeeecCCc-----eEEEEeccchHHHHHhhcCceeEEEEECC
Confidence 8888777653 3333 245678899999999999999999998654 255676554433 2334456899999999
Q ss_pred CCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccc
Q 007283 156 SRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGS 235 (609)
Q Consensus 156 ~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~ 235 (609)
+...++.+.+.. +.+-...+.......+.|.+-|.++.|++..+.+++|+.|-..+|||........ ...|.-+
T Consensus 156 ~S~~vl~c~g~h--~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~----S~~~ey~ 229 (737)
T KOG1524|consen 156 NSNSIVFCQGGH--ISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFT----SAAEEYA 229 (737)
T ss_pred CCCceEEecCCe--EEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCccccc----CChhccc
Confidence 988755544432 3343444444456678899999999999999999999999999999976544332 2368889
Q ss_pred eEEEEECCCCCeEEEEeCCCcEEE
Q 007283 236 VYAVSWSPDGKQVLTASADKSAKV 259 (609)
Q Consensus 236 V~~l~~spd~~~l~s~s~d~~i~i 259 (609)
|++++|.|| +.++.+|. +++|+
T Consensus 230 ITSva~npd-~~~~v~S~-nt~R~ 251 (737)
T KOG1524|consen 230 ITSVAFNPE-KDYLLWSY-NTARF 251 (737)
T ss_pred eeeeeeccc-cceeeeee-eeeee
Confidence 999999999 66666663 46663
No 203
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=1.2e-13 Score=131.97 Aligned_cols=213 Identities=21% Similarity=0.309 Sum_probs=158.3
Q ss_pred cccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCC-CCEEEEEECCCCcceE
Q 007283 49 QVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPD-GLRIVACGDGKGKSLV 127 (609)
Q Consensus 49 ~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spd-g~~l~~~~~~~~~~~~ 127 (609)
+...+.||.+-|+|++|+.||.+|||||.|-.+.|||.-..+.+...-++|...|.++.|=|. +.+++..|.+. +.+
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgD--k~i 119 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGD--KLI 119 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCc--ceE
Confidence 345688999999999999999999999999999999998766555556789999999999995 56666666543 468
Q ss_pred EEEEcCC----------CCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCc-ee---------eeccCc
Q 007283 128 RAFMWDS----------GTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFK-FK---------LSHRGH 187 (609)
Q Consensus 128 ~~~~~~~----------~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~-~~---------~~~~~h 187 (609)
++++.+. ......+..|.++|..++-.|+++..+-+++.||+++-+|++... +. ..+.+.
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 8888874 233456778999999999999999999999999999999975321 11 112223
Q ss_pred ccceEEEEEcCCCC-EEEEEeCCCcEEEEeCCC--------Cc----------cccccCcCCCCc-----------cceE
Q 007283 188 SNFVNCVRFSPDGS-KFISVSSDKKGIIYDGKT--------AD----------KIGELSPEDGHK-----------GSVY 237 (609)
Q Consensus 188 ~~~v~~l~~s~dg~-~l~s~~~d~~i~iwd~~~--------~~----------~~~~~~~~~~h~-----------~~V~ 237 (609)
.-...|+..+|... +||+|+.|.-.++||.+. +. ++..+. .+|- -.++
T Consensus 200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~--p~hlkn~~gn~~~~~~~~t 277 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS--PGHLKNSQGNLDRYITCCT 277 (758)
T ss_pred hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheec--CccccCcccccccceeeeE
Confidence 34578999999854 889999999999999321 11 111111 1222 1257
Q ss_pred EEEECCCCCeEEEEeCCCcEEEeecccC
Q 007283 238 AVSWSPDGKQVLTASADKSAKVWDISED 265 (609)
Q Consensus 238 ~l~~spd~~~l~s~s~d~~i~iwd~~~~ 265 (609)
.+.|+|+|.-|+..-..-+|+++|+..+
T Consensus 278 ~vtfnpNGtElLvs~~gEhVYlfdvn~~ 305 (758)
T KOG1310|consen 278 YVTFNPNGTELLVSWGGEHVYLFDVNED 305 (758)
T ss_pred EEEECCCCcEEEEeeCCeEEEEEeecCC
Confidence 7889999976555555568999998753
No 204
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=5.7e-14 Score=132.40 Aligned_cols=293 Identities=20% Similarity=0.250 Sum_probs=191.9
Q ss_pred ccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCC--CCEEEEEECCCCcceEEE
Q 007283 52 IYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPD--GLRIVACGDGKGKSLVRA 129 (609)
Q Consensus 52 ~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spd--g~~l~~~~~~~~~~~~~~ 129 (609)
.+.+|.+-|+.+-|...|..|+||+.|..|.+||...+.....-..+|...|....|-|. .+.+++++.++- +++
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq---vr~ 213 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ---VRV 213 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc---eee
Confidence 477999999999999999999999999999999999876544334567777877778883 456676653321 222
Q ss_pred EEc-CCCC--eeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCC----ceeeeccCccc---ceEEEEEcCC
Q 007283 130 FMW-DSGT--NVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF----KFKLSHRGHSN---FVNCVRFSPD 199 (609)
Q Consensus 130 ~~~-~~~~--~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~----~~~~~~~~h~~---~v~~l~~s~d 199 (609)
-.. .++. ...-+..|.++|..++..|+.++.|.+||.|+.++-.|.... +.. .-..+.. ....++..|-
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-CREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-eeccCCccceeeeeEecCCC
Confidence 222 2222 133456899999999999999999999999998887664332 121 1122232 6788899987
Q ss_pred CC-EEEEEeCCCcEEEEeCCCCccc------cccCc---CCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCC-
Q 007283 200 GS-KFISVSSDKKGIIYDGKTADKI------GELSP---EDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHG- 268 (609)
Q Consensus 200 g~-~l~s~~~d~~i~iwd~~~~~~~------~~~~~---~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~- 268 (609)
.. .+++++.|...++||.+.-..- ..+-+ .....-.|++++|+.++.-|++.=.|-.|+++.-.-+ .+
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~-~G~ 371 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMG-DGS 371 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccc-cCC
Confidence 65 8999999999999996543221 11111 0112346999999977665555556778999853211 11
Q ss_pred ---------ceEEE-eccCCCCCccceEEEE-EEc--CCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecC
Q 007283 269 ---------KLKKT-LTPSGSGGVDDMLVGC-LWQ--NDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNI 335 (609)
Q Consensus 269 ---------~~~~~-~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 335 (609)
...+. +....+ ...+-++ +|. ..++++++.-|.|.+|+-.... .+..+.+...-|.|+.-++-
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN---~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e-ii~~MegDr~VVNCLEpHP~ 447 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRN---SRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE-IIRFMEGDRHVVNCLEPHPH 447 (559)
T ss_pred CCCCCcchhhccchhhccccc---ccccceeeeccCccceEEecCccceEEEEecchhH-HHHHhhcccceEeccCCCCC
Confidence 11111 111111 0111222 233 4588888999999999854322 22234555556777765544
Q ss_pred CCCEEEEEecCCcEEEEec
Q 007283 336 DPKVILSSSYDGLIVKWIQ 354 (609)
Q Consensus 336 ~~~~~~t~s~dg~i~~W~~ 354 (609)
. -++++++.|..|++|-.
T Consensus 448 ~-PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 448 L-PVLASSGIDHDVKIWTP 465 (559)
T ss_pred C-chhhccCCccceeeecC
Confidence 3 37999999999999965
No 205
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.55 E-value=6.7e-11 Score=108.38 Aligned_cols=227 Identities=13% Similarity=0.198 Sum_probs=150.5
Q ss_pred ecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEE--EECCCCCEEEEEeCC--CcEEEEcCCCCceeeEEEeec
Q 007283 24 GHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVA--RFSPNGEWIASADVS--GTVRIWGAHNDHVLKKEFRVL 99 (609)
Q Consensus 24 ~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~--~~sp~g~~las~~~d--~~i~vWd~~~~~~~~~~~~~~ 99 (609)
+..|+..|.......-.+|..+.-.. .+..-.+.+.-+ -|| ..++|-.+.+ +.+++.+...+..+. ++ ..
T Consensus 13 ~Nqd~~~lsvGs~~Gyk~~~~~~~~k--~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~IC-e~-~f 86 (391)
T KOG2110|consen 13 FNQDSTLLSVGSKDGYKIFSCSPFEK--CFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTIC-EI-FF 86 (391)
T ss_pred eccceeEEEccCCCceeEEecCchHH--hhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceEE-EE-ec
Confidence 55554444333334455666644333 122222333333 354 4567655544 348888876654332 22 24
Q ss_pred ccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEec---CCccEEEEEEeeCCCeEEEEecCC-CeEEEEeC
Q 007283 100 SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDG---HSRRVLSCAFKPSRPFRIATCGED-FLVNFYEG 175 (609)
Q Consensus 100 ~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~p~~~~~i~t~~~d-~~i~~~~~ 175 (609)
..+|.++.+..+ +|+++=... +.+++...=+.+.++.. +...+..+++++.+.+...-++.+ |.+.+||.
T Consensus 87 pt~IL~VrmNr~--RLvV~Lee~----IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~ 160 (391)
T KOG2110|consen 87 PTSILAVRMNRK--RLVVCLEES----IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDT 160 (391)
T ss_pred CCceEEEEEccc--eEEEEEccc----EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEc
Confidence 567888888764 566554332 44555544445555443 333455555555555544444444 78999999
Q ss_pred CCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCc-EEEEeCCCCccccccCcCCCC-ccceEEEEECCCCCeEEEEeC
Q 007283 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKK-GIIYDGKTADKIGELSPEDGH-KGSVYAVSWSPDGKQVLTASA 253 (609)
Q Consensus 176 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~h-~~~V~~l~~spd~~~l~s~s~ 253 (609)
.+.+....+..|.+.+.|++|+|+|.+||||++.|+ |+++.+.+++++..+.- |. ...|.+++|+||+++|++.|.
T Consensus 161 ~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR--G~~~~~IySL~Fs~ds~~L~~sS~ 238 (391)
T KOG2110|consen 161 INLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR--GTYPVSIYSLSFSPDSQFLAASSN 238 (391)
T ss_pred ccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC--CceeeEEEEEEECCCCCeEEEecC
Confidence 998888888999999999999999999999999996 47999999998877642 32 356899999999999999999
Q ss_pred CCcEEEeeccc
Q 007283 254 DKSAKVWDISE 264 (609)
Q Consensus 254 d~~i~iwd~~~ 264 (609)
.++|.+|.++.
T Consensus 239 TeTVHiFKL~~ 249 (391)
T KOG2110|consen 239 TETVHIFKLEK 249 (391)
T ss_pred CCeEEEEEecc
Confidence 99999998753
No 206
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=1.7e-13 Score=127.30 Aligned_cols=195 Identities=19% Similarity=0.271 Sum_probs=142.4
Q ss_pred eEEeecCCCCeEEEeC-CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEE-e
Q 007283 20 ILISGHPKSNSILYTN-GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEF-R 97 (609)
Q Consensus 20 ~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~-~ 97 (609)
-.+++..+|..++..+ ++.++||+..+.........|...|.++.|||||++||+.+.| ..+||+.+++-.+.+.- .
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 4788888988887764 6899999976666655667788999999999999999999999 99999999874332221 2
Q ss_pred ecccceeEEEECCCC---CEEEEEEC--CCCcceEEEEEcCCCCeeE--EEecCCccEEEEEEeeCCCeEEEEecCCCeE
Q 007283 98 VLSGRIDDLQWSPDG---LRIVACGD--GKGKSLVRAFMWDSGTNVG--EFDGHSRRVLSCAFKPSRPFRIATCGEDFLV 170 (609)
Q Consensus 98 ~~~~~v~~~~~spdg---~~l~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i 170 (609)
..+.....+.|+.|+ .++++... ++.....++..|+.+..+. ........|.+++.+++|.+ +|.|+.|+.+
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf-~AlGT~dGsV 305 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF-LALGTMDGSV 305 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE-EEEeccCCcE
Confidence 234457889999987 33333332 2222223344555432222 12223446999999999986 9999999999
Q ss_pred EEEeCCCCceeee-ccCcccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007283 171 NFYEGPPFKFKLS-HRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYD 216 (609)
Q Consensus 171 ~~~~~~~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd 216 (609)
-+++....+...- .+.|...|+.+.|+||.+.+++.+.|....+..
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTK 352 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEE
Confidence 9999877665443 457999999999999999999888887766654
No 207
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=1.1e-13 Score=132.08 Aligned_cols=135 Identities=27% Similarity=0.489 Sum_probs=107.7
Q ss_pred eeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECC--CCCeEEEEeCCCcE
Q 007283 180 FKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSP--DGKQVLTASADKSA 257 (609)
Q Consensus 180 ~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~~~l~s~s~d~~i 257 (609)
...++.||.+-|+|++|+.||.+|++|++|-.++|||+...+.+..+. .||...|.++.|-| ..+.+++|+.|..|
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~--TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS--TGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee--cccccceeEEeeeccCCCeEEEeccCcceE
Confidence 445688999999999999999999999999999999999888777664 69999999999998 46789999999999
Q ss_pred EEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCC
Q 007283 258 KVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDP 337 (609)
Q Consensus 258 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 337 (609)
+++|+.....+ +.+. ...........|...|..++..+..+
T Consensus 120 ~lfdl~~~~~~------------~~d~---------------------------~~~~~~~~~~cht~rVKria~~p~~P 160 (758)
T KOG1310|consen 120 KLFDLDSSKEG------------GMDH---------------------------GMEETTRCWSCHTDRVKRIATAPNGP 160 (758)
T ss_pred EEEeccccccc------------cccc---------------------------CccchhhhhhhhhhhhhheecCCCCC
Confidence 99998631111 0000 00111123456888898998888888
Q ss_pred CEEEEEecCCcEEEEecC
Q 007283 338 KVILSSSYDGLIVKWIQG 355 (609)
Q Consensus 338 ~~~~t~s~dg~i~~W~~~ 355 (609)
..+.+++.||+|+..|..
T Consensus 161 htfwsasEDGtirQyDiR 178 (758)
T KOG1310|consen 161 HTFWSASEDGTIRQYDIR 178 (758)
T ss_pred ceEEEecCCcceeeeccc
Confidence 999999999999988754
No 208
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.54 E-value=6.8e-13 Score=126.71 Aligned_cols=224 Identities=19% Similarity=0.280 Sum_probs=150.2
Q ss_pred CCCccCcCceeEEeecCCCCeEEEeCCCEEEEEeCCCCcccc------ccccCCCCcEEEEE-----CCCCCEEEEEeCC
Q 007283 10 CVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVS------IYGEHAYPATVARF-----SPNGEWIASADVS 78 (609)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~------~~~~h~~~v~~~~~-----sp~g~~las~~~d 78 (609)
...+...|..++--.+-+|..|++-.|+.+++|+......+. .|.+ .+-.|=+| .|.|--|..|-.-
T Consensus 117 ~~s~~~sg~~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~g--t~P~cHdfn~~~a~~~g~dllIGf~t 194 (636)
T KOG2394|consen 117 PHSNANSGIVTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKG--TSPTCHDFNSFTATPKGLDLLIGFTT 194 (636)
T ss_pred ccccccccceeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhcccC--CCCceecccccccCCCCcceEEeecc
Confidence 333444454445555556889999999999999986433322 1221 12233334 4667667777778
Q ss_pred CcEEEEcCCCCceee-EE--EeecccceeEEEECCCC--CEEEEEECCCCcceEEEEEcC--------------CCC---
Q 007283 79 GTVRIWGAHNDHVLK-KE--FRVLSGRIDDLQWSPDG--LRIVACGDGKGKSLVRAFMWD--------------SGT--- 136 (609)
Q Consensus 79 ~~i~vWd~~~~~~~~-~~--~~~~~~~v~~~~~spdg--~~l~~~~~~~~~~~~~~~~~~--------------~~~--- 136 (609)
|.|++.|....++.+ .. -...+..|+++.|-|.+ .+|++-.++. +.+++.. .+.
T Consensus 195 Gqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGn----lyly~~~~~~~~t~p~~~~~k~~~~f~ 270 (636)
T KOG2394|consen 195 GQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGN----LYLYDKEIVCGATAPSYQALKDGDQFA 270 (636)
T ss_pred CceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCc----eEEeeccccccCCCCcccccCCCCeeE
Confidence 889988876533211 11 11224679999999954 4555544433 1122111 000
Q ss_pred -----------eeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEE
Q 007283 137 -----------NVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFIS 205 (609)
Q Consensus 137 -----------~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 205 (609)
++.-+.--.+.|...+|+||+.+ +|+.+.|+.+++++..+.++...++..-+...|++|||||++|++
T Consensus 271 i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~-LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvt 349 (636)
T KOG2394|consen 271 ILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKY-LATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVT 349 (636)
T ss_pred EeeeeccccCCccceeEeccccccceeEcCCCce-EEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEe
Confidence 11111112346788999999986 999999999999998877766666666677999999999999999
Q ss_pred EeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECC
Q 007283 206 VSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSP 243 (609)
Q Consensus 206 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp 243 (609)
|++|-.+.||.+...+.+..- .||++.|..++|.|
T Consensus 350 GGEDDLVtVwSf~erRVVARG---qGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 350 GGEDDLVTVWSFEERRVVARG---QGHKSWVSVVAFDP 384 (636)
T ss_pred cCCcceEEEEEeccceEEEec---cccccceeeEeecc
Confidence 999999999999888877654 48999999999973
No 209
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=3.3e-12 Score=130.70 Aligned_cols=215 Identities=13% Similarity=0.114 Sum_probs=142.2
Q ss_pred EEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeC---CCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCE
Q 007283 38 SVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADV---SGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLR 114 (609)
Q Consensus 38 ~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~---d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 114 (609)
.+.++|...... +.+..|...+..++|||||+.||..+. +..|.+||+.+++. ..+..+.+.+...+|||||++
T Consensus 183 ~l~~~d~dg~~~-~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 183 RLAIMDQDGANV-RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred EEEEECCCCCCc-EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCCcccCcEECCCCCE
Confidence 677888754443 446678889999999999999987653 46899999987653 345556677889999999999
Q ss_pred EEEEECCCCcceEEEEEcCC-CCeeEEEecCCccEEEEEEeeCCCeEEEEecCCC--eEEEEeCCCCceeeeccCcccce
Q 007283 115 IVACGDGKGKSLVRAFMWDS-GTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDF--LVNFYEGPPFKFKLSHRGHSNFV 191 (609)
Q Consensus 115 l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~--~i~~~~~~~~~~~~~~~~h~~~v 191 (609)
|+...+..+. ..+|.++. +.....+..+........|+|++..++.+...++ .+.+++....+...... +...+
T Consensus 260 la~~~~~~g~--~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~-~~~~~ 336 (435)
T PRK05137 260 VVMSLSQGGN--TDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISF-GGGRY 336 (435)
T ss_pred EEEEEecCCC--ceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeec-CCCcc
Confidence 8766543332 23555543 2233445556666678899999986444443443 56666765544433222 23445
Q ss_pred EEEEEcCCCCEEEEEeCC---CcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCC------CcEEEeec
Q 007283 192 NCVRFSPDGSKFISVSSD---KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASAD------KSAKVWDI 262 (609)
Q Consensus 192 ~~l~~s~dg~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d------~~i~iwd~ 262 (609)
....|+|||+.|+..+.+ ..+.+||...+. ...+. ....+..+.|+|||++|+..+.+ ..+.+.|+
T Consensus 337 ~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt----~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 337 STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILT----SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred cCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEecc----CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence 678899999999887653 357788865443 22232 12246788999999988776543 24666666
Q ss_pred c
Q 007283 263 S 263 (609)
Q Consensus 263 ~ 263 (609)
.
T Consensus 412 ~ 412 (435)
T PRK05137 412 T 412 (435)
T ss_pred C
Confidence 4
No 210
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=2.2e-12 Score=131.18 Aligned_cols=216 Identities=16% Similarity=0.079 Sum_probs=141.3
Q ss_pred EEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEe---CCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCE
Q 007283 38 SVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASAD---VSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLR 114 (609)
Q Consensus 38 ~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~---~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 114 (609)
.+.++|........ +..+.+.+..++|||||+.||..+ .+..|.+|++.+++. ..+....+.+..++|||||++
T Consensus 180 ~l~~~d~dg~~~~~-lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--~~l~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 180 ELRVSDYDGYNQFV-VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eEEEEcCCCCCCEE-eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--EEccCCCCCcCCeEECCCCCE
Confidence 68888886655433 455677899999999999998654 235788999877652 223344455667899999999
Q ss_pred EEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEE--eCCCCceeeeccCcccceE
Q 007283 115 IVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFY--EGPPFKFKLSHRGHSNFVN 192 (609)
Q Consensus 115 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~--~~~~~~~~~~~~~h~~~v~ 192 (609)
|+.+.+..+...+.+++.+.+.. ..+..+...+....|+|++..++.+...++...+| +...++... +..+.....
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~-~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~-lt~~~~~~~ 334 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR-ITWEGSQNQ 334 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCE-EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE-eecCCCCcc
Confidence 99875543333344444444433 33444445678899999998655555444545555 554443322 222333456
Q ss_pred EEEEcCCCCEEEEEeCC---CcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCc---EEEeecc
Q 007283 193 CVRFSPDGSKFISVSSD---KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKS---AKVWDIS 263 (609)
Q Consensus 193 ~l~~s~dg~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~---i~iwd~~ 263 (609)
+..|+|||+.|+..+.+ ..+.+||..+++. ..+.. . .......|+|||++|+..+.++. +.++++.
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~--~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTD--T--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred CEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCC--C--CCCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 78899999998877643 3577889877653 23321 1 12346889999999999988765 5666664
No 211
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=4.8e-12 Score=109.00 Aligned_cols=149 Identities=17% Similarity=0.222 Sum_probs=108.0
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEe-
Q 007283 450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLK- 528 (609)
Q Consensus 450 ~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~- 528 (609)
++++-+.|..+-++.++.|+.++.||++++.+ ..++.+|+.-|.++.--.....+.||+.||++|+||..+.+....
T Consensus 117 INam~ldP~enSi~~AgGD~~~y~~dlE~G~i--~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~i 194 (325)
T KOG0649|consen 117 INAMWLDPSENSILFAGGDGVIYQVDLEDGRI--QREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMI 194 (325)
T ss_pred cceeEeccCCCcEEEecCCeEEEEEEecCCEE--EEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEe
Confidence 67778888777777777999999999999987 467899999999999855566788999999999999877653211
Q ss_pred ------e-ecCCC-CceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEcCCCeEEEEeCCCc
Q 007283 529 ------N-MLYHT-ARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDAC 600 (609)
Q Consensus 529 ------~-~~~h~-~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~D~~ 600 (609)
. +..|. ..|-|++. +..+|+.|+. ..+.+|++.......... -..+|.-+.|-+ ..++++|+-..
T Consensus 195 e~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrsse~t~vfp---ipa~v~~v~F~~-d~vl~~G~g~~ 267 (325)
T KOG0649|consen 195 EPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSESTCVFP---IPARVHLVDFVD-DCVLIGGEGNH 267 (325)
T ss_pred ccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCCCceEEEe---cccceeEeeeec-ceEEEeccccc
Confidence 0 11222 34777777 4668877754 458999997643221121 234466777765 45777888888
Q ss_pred EEEEEcc
Q 007283 601 VRVWRLT 607 (609)
Q Consensus 601 i~~W~~~ 607 (609)
+.-|.+.
T Consensus 268 v~~~~l~ 274 (325)
T KOG0649|consen 268 VQSYTLN 274 (325)
T ss_pred eeeeeec
Confidence 8888764
No 212
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.53 E-value=9.7e-14 Score=132.37 Aligned_cols=94 Identities=21% Similarity=0.352 Sum_probs=77.4
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcc
Q 007283 491 RGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSR 570 (609)
Q Consensus 491 ~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~ 570 (609)
++.|+..+|||||++||+.|+|+.+||+|+.+.++. ..++---+...||+|||||++|++|+.|-.|.||.+... ..
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLl-g~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er--RV 366 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELL-GVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER--RV 366 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHH-HHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc--eE
Confidence 458899999999999999999999999998765432 122223467899999999999999999999999998753 23
Q ss_pred eeEeccccCCeEEEEEc
Q 007283 571 MTIKGAHLGGVYGLAFT 587 (609)
Q Consensus 571 ~~~~~~h~~~v~~~~~s 587 (609)
..-..||..+|..|+|.
T Consensus 367 VARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 367 VARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEeccccccceeeEeec
Confidence 45556899999999995
No 213
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=2.2e-12 Score=131.80 Aligned_cols=216 Identities=16% Similarity=0.127 Sum_probs=140.3
Q ss_pred EEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCC---CcEEEEcCCCCceeeEEEeecccceeEEEECCCCCE
Q 007283 38 SVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVS---GTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLR 114 (609)
Q Consensus 38 ~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d---~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 114 (609)
.+.++|...... +.+..|...+..++|+|||+.||..+.+ ..|.+|++.+++. ..+....+....++|||||++
T Consensus 185 ~l~i~D~~g~~~-~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--~~l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 185 ALQVADSDGYNP-QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--ELVASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEECCCCCCc-eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--EEeccCCCCccCceECCCCCE
Confidence 588898855444 3455677789999999999999977643 4699999987653 233444555668899999998
Q ss_pred EEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCe--EEEEeCCCCceeeeccCcccceE
Q 007283 115 IVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFL--VNFYEGPPFKFKLSHRGHSNFVN 192 (609)
Q Consensus 115 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~--i~~~~~~~~~~~~~~~~h~~~v~ 192 (609)
|+...+..+...+.+++.+.+. ...+..+.......+|+|++..++.+...++. +..++...++..... .+.....
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~~g~~~~ 339 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT-FQGNYNA 339 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee-cCCCCcc
Confidence 8765433333334444444443 33455555556678999999875555545544 444565554433222 1223345
Q ss_pred EEEEcCCCCEEEEEeCCC---cEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCC---CcEEEeecc
Q 007283 193 CVRFSPDGSKFISVSSDK---KGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASAD---KSAKVWDIS 263 (609)
Q Consensus 193 ~l~~s~dg~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d---~~i~iwd~~ 263 (609)
..+|+|||+.|+..+.++ .+.+||..+++.. .+. +........|+|||++++..+.+ +.+.++++.
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt----~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT----PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC----CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 689999999988765443 5889998776643 332 22235577999999988777653 346666654
No 214
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.53 E-value=1.1e-12 Score=115.75 Aligned_cols=245 Identities=16% Similarity=0.210 Sum_probs=167.6
Q ss_pred CCcEEEEEC--CC-CCEEEEEeC----CCcEEEEcCCCC--ceeeEEEeecccceeEEEECCCCC-----EEEEEECCCC
Q 007283 58 YPATVARFS--PN-GEWIASADV----SGTVRIWGAHND--HVLKKEFRVLSGRIDDLQWSPDGL-----RIVACGDGKG 123 (609)
Q Consensus 58 ~~v~~~~~s--p~-g~~las~~~----d~~i~vWd~~~~--~~~~~~~~~~~~~v~~~~~spdg~-----~l~~~~~~~~ 123 (609)
....++.|| |+ +.+||-|+. ...|+|-.+... +.....--.|.=+++.+.|.||.+ .|++++|
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D--- 121 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSD--- 121 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccC---
Confidence 356777777 33 456887764 356777765532 221111123555889999999863 5566554
Q ss_pred cceEEEEEcCCCCe-e---EEE-----ecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCC---ceeeeccCcccce
Q 007283 124 KSLVRAFMWDSGTN-V---GEF-----DGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF---KFKLSHRGHSNFV 191 (609)
Q Consensus 124 ~~~~~~~~~~~~~~-~---~~~-----~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~---~~~~~~~~h~~~v 191 (609)
.+|+|....... + ..+ ..+..++++.+|..-++.+|.+++-|.+..+||++.+ ..+..+-.|...|
T Consensus 122 --~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV 199 (364)
T KOG0290|consen 122 --FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEV 199 (364)
T ss_pred --eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcce
Confidence 355655542111 1 111 2456789999999888889999999999999998875 2455677899999
Q ss_pred EEEEEcCCCC-EEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCC-CCeEEEEeCC-CcEEEeecccCCCC
Q 007283 192 NCVRFSPDGS-KFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD-GKQVLTASAD-KSAKVWDISEDNHG 268 (609)
Q Consensus 192 ~~l~~s~dg~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd-~~~l~s~s~d-~~i~iwd~~~~~~~ 268 (609)
..++|..++. .||+++.||.++++|.+.-+.-..+............++|++. -+++|+-..| ..|.|-|++
T Consensus 200 ~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR----- 274 (364)
T KOG0290|consen 200 YDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIR----- 274 (364)
T ss_pred eEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEec-----
Confidence 9999999765 7899999999999998876543333222222345666777663 3456655544 335555543
Q ss_pred ceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCc
Q 007283 269 KLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGL 348 (609)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~ 348 (609)
....+...+.+|...|.++++.+..+..+.||++|..
T Consensus 275 -------------------------------------------~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q 311 (364)
T KOG0290|consen 275 -------------------------------------------VPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ 311 (364)
T ss_pred -------------------------------------------CCCcceehhhcCcccccceEecCCCCceeeecCCcce
Confidence 1222345678999999999999888889999999999
Q ss_pred EEEEecC
Q 007283 349 IVKWIQG 355 (609)
Q Consensus 349 i~~W~~~ 355 (609)
+.+|++.
T Consensus 312 aliWDl~ 318 (364)
T KOG0290|consen 312 ALIWDLQ 318 (364)
T ss_pred EEEEecc
Confidence 9999875
No 215
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=2.5e-12 Score=130.94 Aligned_cols=207 Identities=18% Similarity=0.207 Sum_probs=135.6
Q ss_pred CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCC---CcEEEEcCCCCceeeEEEeecccceeEEEECCCCC
Q 007283 37 RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVS---GTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGL 113 (609)
Q Consensus 37 ~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d---~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~ 113 (609)
..+.++|..... .+.+..+.+.+.+++|||||+.||..+.+ ..|.+||+.+++.. .+....+.+...+|||||+
T Consensus 176 ~~L~~~D~dG~~-~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~--~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDADGQN-AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR--VVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCCCCC-ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE--EeecCCCCccceEECCCCC
Confidence 367777774333 33355677889999999999999876642 35999999876532 3444455677899999999
Q ss_pred EEEEEECCCCcceEEEEEcCC-CCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEe--CCCCceee-eccCccc
Q 007283 114 RIVACGDGKGKSLVRAFMWDS-GTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYE--GPPFKFKL-SHRGHSN 189 (609)
Q Consensus 114 ~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~--~~~~~~~~-~~~~h~~ 189 (609)
+|+...+..+. .++|.++. +.....+..+........|+|++..++.+...++...+|. ....+... .+.+ .
T Consensus 253 ~la~~~~~~g~--~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g--~ 328 (427)
T PRK02889 253 TLAVALSRDGN--SQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG--S 328 (427)
T ss_pred EEEEEEccCCC--ceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC--C
Confidence 98865533332 34555543 2234445555555677899999987555555555556664 33333222 2222 2
Q ss_pred ceEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCC
Q 007283 190 FVNCVRFSPDGSKFISVSSDK---KGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADK 255 (609)
Q Consensus 190 ~v~~l~~s~dg~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~ 255 (609)
......|+|||++|+..+.++ .+.+||..+++.. .+. .........|+|||++|+..+.++
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt----~~~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALT----DTTRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-Ecc----CCCCccCceECCCCCEEEEEEecC
Confidence 334578999999998877654 5899998876643 332 112346789999999988887543
No 216
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1.2e-11 Score=123.35 Aligned_cols=249 Identities=18% Similarity=0.184 Sum_probs=166.7
Q ss_pred eeecCCCccCcCceeEEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCC------C------CEEE
Q 007283 6 ETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPN------G------EWIA 73 (609)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~------g------~~la 73 (609)
.|.+..|..++- .++..+|.| .|+|+.++.|.+.|.-+-+.++.++.|+..|+.++|.|- + -+||
T Consensus 7 ~tlpG~l~~sN~--~A~Dw~~~G-LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliA 83 (1062)
T KOG1912|consen 7 HTLPGPLSRSNR--NAADWSPSG-LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIA 83 (1062)
T ss_pred ccCCCCCCcccc--cccccCccc-eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEE
Confidence 456666666552 378888876 699999999999998877777888999999999999763 2 2678
Q ss_pred EEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECC---CCC-EEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEE
Q 007283 74 SADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSP---DGL-RIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVL 149 (609)
Q Consensus 74 s~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~sp---dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 149 (609)
+++-.|.|.|||+...-. ...+..+..++..++|=| |.+ .|+++. +. ..+.+|.-++|.......-......
T Consensus 84 saD~~GrIil~d~~~~s~-~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh-~s--s~lvLwntdtG~k~Wk~~ys~~iLs 159 (1062)
T KOG1912|consen 84 SADISGRIILVDFVLASV-INWLSHSNDSVQDLCWVPARDDSRDVLLAIH-GS--STLVLWNTDTGEKFWKYDYSHEILS 159 (1062)
T ss_pred eccccCcEEEEEehhhhh-hhhhcCCCcchhheeeeeccCcchheeEEec-CC--cEEEEEEccCCceeeccccCCccee
Confidence 898999999999987542 345777888888888766 553 444443 22 2455666677776665444444566
Q ss_pred EEEEeeCCCeEEEEecCCCeEEEE-eCC------CCceeeeccCccc-------------------------ceEEEEEc
Q 007283 150 SCAFKPSRPFRIATCGEDFLVNFY-EGP------PFKFKLSHRGHSN-------------------------FVNCVRFS 197 (609)
Q Consensus 150 ~~~~~p~~~~~i~t~~~d~~i~~~-~~~------~~~~~~~~~~h~~-------------------------~v~~l~~s 197 (609)
++.+.|-+..-++.-+..+.+..- +.. +++..+....|.. +-..++|+
T Consensus 160 ~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~ 239 (1062)
T KOG1912|consen 160 CFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFS 239 (1062)
T ss_pred eeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcC
Confidence 688888665445444444444333 211 1222222222211 11245678
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCC--CeEEEEeCCCcEEEeeccc
Q 007283 198 PDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDG--KQVLTASADKSAKVWDISE 264 (609)
Q Consensus 198 ~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~--~~l~s~s~d~~i~iwd~~~ 264 (609)
|.-+.++....-..+.++|.+-..++..... ..+.+.-+.+-|++ ..|++.-.||.+.+|-.+.
T Consensus 240 p~~rn~lfi~~prellv~dle~~~~l~vvpi---er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 240 PHWRNILFITFPRELLVFDLEYECCLAVVPI---ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hhhhceEEEEeccceEEEcchhhceeEEEEe---ccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 8877677777888899999887776665532 34556677777765 4688999999999997543
No 217
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.52 E-value=2.1e-12 Score=115.98 Aligned_cols=298 Identities=15% Similarity=0.187 Sum_probs=181.5
Q ss_pred eecCCCCeEEEeC--CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEE-EEEeCCCcEEEEcCCCCceeeEEEeec
Q 007283 23 SGHPKSNSILYTN--GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWI-ASADVSGTVRIWGAHNDHVLKKEFRVL 99 (609)
Q Consensus 23 ~~~~~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l-as~~~d~~i~vWd~~~~~~~~~~~~~~ 99 (609)
...-|..+|+... ...|.+|++.+++....+..-..++..+++||||+-| .+.+.|-.|.||.+.+.++.. +...
T Consensus 55 eW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~--~~~p 132 (447)
T KOG4497|consen 55 EWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL--LPHP 132 (447)
T ss_pred eeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE--eccc
Confidence 3444555666553 3588999999998877776667789999999999655 577789999999998876432 3333
Q ss_pred ccceeEEEECCCCCEEEEEECCCCcceEEE---EEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCC
Q 007283 100 SGRIDDLQWSPDGLRIVACGDGKGKSLVRA---FMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGP 176 (609)
Q Consensus 100 ~~~v~~~~~spdg~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~ 176 (609)
...+..++|+|||++.+.+.-..-...+.+ ..| ..++.++-.+-..+.+-|+|||.. + -+||..
T Consensus 133 K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W---~ll~~f~~dT~DltgieWsPdg~~-l---------aVwd~~ 199 (447)
T KOG4497|consen 133 KTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW---ILLKEFKLDTIDLTGIEWSPDGNW-L---------AVWDNV 199 (447)
T ss_pred ccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH---HHHHhcCCCcccccCceECCCCcE-E---------EEecch
Confidence 556799999999998776652111101111 111 123455666677888999999985 3 345532
Q ss_pred CCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccc---------------------------------
Q 007283 177 PFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKI--------------------------------- 223 (609)
Q Consensus 177 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~--------------------------------- 223 (609)
---.+..+ .-.-.+..++|+|-+++|+.|+.|+.+++.+-.+.+.+
T Consensus 200 Leykv~aY-e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLs 278 (447)
T KOG4497|consen 200 LEYKVYAY-ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLS 278 (447)
T ss_pred hhheeeee-eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccc
Confidence 11111111 11234788999999999999999998876431110000
Q ss_pred ---------------------------cccCc---CCCCccceEEEEECCCCCeEEEEeC--CCcEEEeecccCCCCceE
Q 007283 224 ---------------------------GELSP---EDGHKGSVYAVSWSPDGKQVLTASA--DKSAKVWDISEDNHGKLK 271 (609)
Q Consensus 224 ---------------------------~~~~~---~~~h~~~V~~l~~spd~~~l~s~s~--d~~i~iwd~~~~~~~~~~ 271 (609)
..+.+ .....-.+.-++|++|..++++-.. -+.+.+||++. .++.
T Consensus 279 f~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~---l~l~ 355 (447)
T KOG4497|consen 279 FTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN---LKLH 355 (447)
T ss_pred cCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh---hhhh
Confidence 00000 0112345778999999999998753 25688999863 2222
Q ss_pred EEeccCCCCCccceEEEEEEcCC--eEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCc
Q 007283 272 KTLTPSGSGGVDDMLVGCLWQND--FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGL 348 (609)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~ 348 (609)
..+... ..+..+.|++. .+++......+++|.... ......++.--+|..+.++.+ +..++-++.|.-
T Consensus 356 avLiQk------~piraf~WdP~~prL~vctg~srLY~W~psg--~~~V~vP~~GF~i~~l~W~~~-g~~i~l~~kDaf 425 (447)
T KOG4497|consen 356 AVLIQK------HPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG--PRVVGVPKKGFNIQKLQWLQP-GEFIVLCGKDAF 425 (447)
T ss_pred hhhhhc------cceeEEEeCCCCceEEEEcCCceEEEEcCCC--ceEEecCCCCceeeeEEecCC-CcEEEEEcCCce
Confidence 222111 12445667654 455555556677786543 222222333357778887643 345666666543
No 218
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=3.7e-12 Score=129.43 Aligned_cols=216 Identities=13% Similarity=0.177 Sum_probs=141.6
Q ss_pred ceeEEeecCCCCeEEEeC----CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEE-eCCC--cEEEEcCCCCc
Q 007283 18 RGILISGHPKSNSILYTN----GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASA-DVSG--TVRIWGAHNDH 90 (609)
Q Consensus 18 ~~~~~~~~~~~~~l~~~~----~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~-~~d~--~i~vWd~~~~~ 90 (609)
......++|||+.|+|.. ...+.++++.+++... +....+.+..++|||||+.||.. +.++ .|.+||+.+++
T Consensus 200 ~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~ 278 (429)
T PRK03629 200 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ 278 (429)
T ss_pred ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 455889999999998852 3578899998775432 22233445678999999998854 4455 48888987765
Q ss_pred eeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCC-CeeEEEecCCccEEEEEEeeCCCeEEEEecCC--
Q 007283 91 VLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSG-TNVGEFDGHSRRVLSCAFKPSRPFRIATCGED-- 167 (609)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d-- 167 (609)
. ..+......+...+|+|||++|+.+.+..+. .++|.++.. .....+..+........|+|++..++.+...+
T Consensus 279 ~--~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~--~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~ 354 (429)
T PRK03629 279 I--RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGR--PQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQ 354 (429)
T ss_pred E--EEccCCCCCcCceEECCCCCEEEEEeCCCCC--ceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCC
Confidence 3 2344444567889999999999988765433 345555432 22333433444456788999998755555443
Q ss_pred CeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCc---EEEEeCCCCccccccCcCCCCccceEEEEECCC
Q 007283 168 FLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKK---GIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD 244 (609)
Q Consensus 168 ~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~---i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd 244 (609)
..+.+||..+++.......+ ......|+|||++|+.++.++. +.+++.. +.....+ .+|.+.+...+|+|-
T Consensus 355 ~~I~~~dl~~g~~~~Lt~~~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l---~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 355 QHIAKQDLATGGVQVLTDTF--LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARL---PATDGQVKFPAWSPY 428 (429)
T ss_pred ceEEEEECCCCCeEEeCCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEEC---ccCCCCcCCcccCCC
Confidence 35677787666543322222 2345789999999999988764 4566653 3333344 257778888999873
No 219
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.51 E-value=8.9e-11 Score=105.47 Aligned_cols=241 Identities=13% Similarity=0.175 Sum_probs=152.5
Q ss_pred cCceeEEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEE-EeCC------CcEEEEcCCC
Q 007283 16 RGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIAS-ADVS------GTVRIWGAHN 88 (609)
Q Consensus 16 ~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las-~~~d------~~i~vWd~~~ 88 (609)
.+....+++..|....+.+.....+||...--+....-..+.+++.-+..---.++||- |+.+ ..+.||| +.
T Consensus 5 ~~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWD-D~ 83 (346)
T KOG2111|consen 5 EPKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWD-DL 83 (346)
T ss_pred cCceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEe-cc
Confidence 44556789998887777766666777777432221111112222222222223466763 3332 3799999 33
Q ss_pred CceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCC-CCeeEEEecCCccEEEEEEeeCCCeEEEEe--c
Q 007283 89 DHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDS-GTNVGEFDGHSRRVLSCAFKPSRPFRIATC--G 165 (609)
Q Consensus 89 ~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~--~ 165 (609)
.+.+..++ ....+|.++.+++| +++++-.++ +.+|.+.. .+.+..+.....+=--|+..|.....+.++ -
T Consensus 84 k~~~i~el-~f~~~I~~V~l~r~--riVvvl~~~----I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~ 156 (346)
T KOG2111|consen 84 KERCIIEL-SFNSEIKAVKLRRD--RIVVVLENK----IYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGF 156 (346)
T ss_pred cCcEEEEE-EeccceeeEEEcCC--eEEEEecCe----EEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCC
Confidence 33333333 35678999999987 566554432 44444442 233444433222211344445433333333 3
Q ss_pred CCCeEEEEeCCCCce--eeeccCcccceEEEEEcCCCCEEEEEeCCCc-EEEEeCCCCccccccCcCCCCccceEEEEEC
Q 007283 166 EDFLVNFYEGPPFKF--KLSHRGHSNFVNCVRFSPDGSKFISVSSDKK-GIIYDGKTADKIGELSPEDGHKGSVYAVSWS 242 (609)
Q Consensus 166 ~d~~i~~~~~~~~~~--~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~s 242 (609)
.-|.+++-+...-+. ......|...|.|++.+.+|.++||+|..|+ |+|||..+++.+..+.-. .-...|++++||
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG-~d~A~iy~iaFS 235 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRG-VDRADIYCIAFS 235 (346)
T ss_pred ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecC-CchheEEEEEeC
Confidence 347788877544333 3456789999999999999999999999986 689999999988776421 123579999999
Q ss_pred CCCCeEEEEeCCCcEEEeecccC
Q 007283 243 PDGKQVLTASADKSAKVWDISED 265 (609)
Q Consensus 243 pd~~~l~s~s~d~~i~iwd~~~~ 265 (609)
|+..+|+.+|.-|++.||.+...
T Consensus 236 p~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 236 PNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CCccEEEEEcCCCeEEEEEeecC
Confidence 99999999999999999998653
No 220
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.51 E-value=1.3e-10 Score=104.52 Aligned_cols=101 Identities=16% Similarity=0.309 Sum_probs=82.1
Q ss_pred EeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCe-EEEEEccCCceEEeeecC-CCCceEEEEE
Q 007283 465 GSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNRE-AIVWDRVSREVKLKNMLY-HTARINCLAW 542 (609)
Q Consensus 465 gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~-v~iwd~~~~~~~~~~~~~-h~~~i~~l~~ 542 (609)
|-+-|.|+|-++............+|.+.|.|++.+.+|..+||+|..|| |||||..+++.......+ -.+.|.|++|
T Consensus 155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaF 234 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAF 234 (346)
T ss_pred CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEe
Confidence 34568899999865543223667899999999999999999999999999 589999888764332222 3457999999
Q ss_pred CCCCcEEEEEeCCCeEEEEEcCC
Q 007283 543 SPNNSMVATGSLDTCVIIYEIDK 565 (609)
Q Consensus 543 s~d~~~l~s~s~D~~v~vw~~~~ 565 (609)
|||..+||.+|.-|||.+|.+..
T Consensus 235 Sp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 235 SPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCCccEEEEEcCCCeEEEEEeec
Confidence 99999999999999999998853
No 221
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=3.7e-12 Score=129.65 Aligned_cols=219 Identities=16% Similarity=0.168 Sum_probs=137.9
Q ss_pred cCceeEEeecCCCCeEEEeC---C-CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEE-EEeCCCcEEEEcCCCCc
Q 007283 16 RGRGILISGHPKSNSILYTN---G-RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIA-SADVSGTVRIWGAHNDH 90 (609)
Q Consensus 16 ~~~~~~~~~~~~~~~l~~~~---~-~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~la-s~~~d~~i~vWd~~~~~ 90 (609)
++..+...++|||+.|+|.. + ..+.+||+.+++... +....+.+..++|||||+.|| +.+.++..+||.++...
T Consensus 195 ~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~ 273 (427)
T PRK02889 195 PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADG 273 (427)
T ss_pred CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCC
Confidence 34445788999999998863 2 469999998876543 444455677899999999887 56788888888664321
Q ss_pred eeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcC--CCCeeEEEecCCccEEEEEEeeCCCeEEEEecCC-
Q 007283 91 VLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGED- 167 (609)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d- 167 (609)
.....+..+........|+|||++|+.+++..+. ..+|..+ .+. ...+..+.......+|+|++..++.+...+
T Consensus 274 ~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~--~~Iy~~~~~~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g 350 (427)
T PRK02889 274 SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGA--PQIYRMPASGGA-AQRVTFTGSYNTSPRISPDGKLLAYISRVGG 350 (427)
T ss_pred CCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCC--cEEEEEECCCCc-eEEEecCCCCcCceEECCCCCEEEEEEccCC
Confidence 1123344444556778999999999988764333 2345444 232 222222223344678999998755444333
Q ss_pred -CeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCC-c--EEEEeCCCCccccccCcCCCCccceEEEEECC
Q 007283 168 -FLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDK-K--GIIYDGKTADKIGELSPEDGHKGSVYAVSWSP 243 (609)
Q Consensus 168 -~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~-~--i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp 243 (609)
..+.+|+...++......+ .......|+|||+.|+.++.++ . +.+.+. .+.....+ ..+.+.+...+|+|
T Consensus 351 ~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l---~~~~g~~~~p~wsp 424 (427)
T PRK02889 351 AFKLYVQDLATGQVTALTDT--TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRL---SVQGGDVREPSWGP 424 (427)
T ss_pred cEEEEEEECCCCCeEEccCC--CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEe---ecCCCCCCCCccCC
Confidence 3688888776654433322 2346779999999888877544 2 333344 23333223 13556677778877
Q ss_pred C
Q 007283 244 D 244 (609)
Q Consensus 244 d 244 (609)
-
T Consensus 425 ~ 425 (427)
T PRK02889 425 F 425 (427)
T ss_pred C
Confidence 4
No 222
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=2.3e-11 Score=123.05 Aligned_cols=219 Identities=15% Similarity=0.117 Sum_probs=134.5
Q ss_pred EEEEEeCCCCccccccccCCCCcEEEEECCCCCEEE---EEeCCCcEEEE--cCCCCceeeEEEeecccceeEEEECCCC
Q 007283 38 SVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIA---SADVSGTVRIW--GAHNDHVLKKEFRVLSGRIDDLQWSPDG 112 (609)
Q Consensus 38 ~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~la---s~~~d~~i~vW--d~~~~~~~~~~~~~~~~~v~~~~~spdg 112 (609)
.+.+.|....... .+..+...+...+|||||+.++ ....++.-+|| ++.+++. ..+....+.....+|||||
T Consensus 166 ~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~--~~lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 166 ELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG--KKILALQGNQLMPTFSPRK 242 (428)
T ss_pred eEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc--eEeecCCCCccceEECCCC
Confidence 5667776554443 3444566778899999998532 44455555555 6555442 3344555666788999999
Q ss_pred CEEEEEECCCCcceEEEEEcC--CC---CeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEe--CCC-Cceeeec
Q 007283 113 LRIVACGDGKGKSLVRAFMWD--SG---TNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYE--GPP-FKFKLSH 184 (609)
Q Consensus 113 ~~l~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~--~~~-~~~~~~~ 184 (609)
++|+.+.+..+...+.+..|+ .+ .......++.......+|+|||..++.+...++...+|. ... ......+
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l 322 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL 322 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence 999988754333233343343 21 222222233334467899999986555555566555553 321 1222233
Q ss_pred cCcccceEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeC---CCcEE
Q 007283 185 RGHSNFVNCVRFSPDGSKFISVSSD---KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA---DKSAK 258 (609)
Q Consensus 185 ~~h~~~v~~l~~s~dg~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~---d~~i~ 258 (609)
..+...+....|+|||++|+..+.+ ..+.+||..+++.. .+. .....+....|+|||++|+..+. ...|.
T Consensus 323 t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt---~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~ 398 (428)
T PRK01029 323 TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLT---TSPENKESPSWAIDSLHLVYSAGNSNESELY 398 (428)
T ss_pred ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-Ecc---CCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 3344566788999999998877653 36889998877643 232 12345678999999998775433 34577
Q ss_pred Eeecc
Q 007283 259 VWDIS 263 (609)
Q Consensus 259 iwd~~ 263 (609)
++|+.
T Consensus 399 ~vdl~ 403 (428)
T PRK01029 399 LISLI 403 (428)
T ss_pred EEECC
Confidence 77775
No 223
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=1.5e-11 Score=125.90 Aligned_cols=217 Identities=18% Similarity=0.220 Sum_probs=139.6
Q ss_pred cCceeEEeecCCCCeEEEeC----CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEE-EEeCCCc--EEEEcCCC
Q 007283 16 RGRGILISGHPKSNSILYTN----GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIA-SADVSGT--VRIWGAHN 88 (609)
Q Consensus 16 ~~~~~~~~~~~~~~~l~~~~----~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~la-s~~~d~~--i~vWd~~~ 88 (609)
.+..+...++|||+.|+|.. ...+.+||+.++... .+..+.+.+...+|||||+.|+ +.+.++. |.+||..+
T Consensus 201 ~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~ 279 (435)
T PRK05137 201 SSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS 279 (435)
T ss_pred CCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCC
Confidence 44566888999999999863 258999999877653 3556677788999999999876 5666665 55567766
Q ss_pred CceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCC-
Q 007283 89 DHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGED- 167 (609)
Q Consensus 89 ~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d- 167 (609)
++. ..+..+.......+|+|||++|+.+.+..+...+.+++.+.+. ...+..+...+....|+|++..++.+....
T Consensus 280 ~~~--~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~-~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~ 356 (435)
T PRK05137 280 GTT--TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN-PRRISFGGGRYSTPVWSPRGDLIAFTKQGGG 356 (435)
T ss_pred Cce--EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC-eEEeecCCCcccCeEECCCCCEEEEEEcCCC
Confidence 543 3355555566789999999999988765444333344433332 333433445566788999998755444322
Q ss_pred -CeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCccccccCcCCCCccceEEEE
Q 007283 168 -FLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSD------KKGIIYDGKTADKIGELSPEDGHKGSVYAVS 240 (609)
Q Consensus 168 -~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~ 240 (609)
..+.+++...........+ ..+....|+|||+.|+..+.+ ..+.++|...++. ..+. ..+.+...+
T Consensus 357 ~~~i~~~d~~~~~~~~lt~~--~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~----~~~~~~~p~ 429 (435)
T PRK05137 357 QFSIGVMKPDGSGERILTSG--FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP----TPGDASDPA 429 (435)
T ss_pred ceEEEEEECCCCceEeccCC--CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc----CCCCccCcc
Confidence 3566777544332222222 246778999999988776543 2466667654433 2332 133456677
Q ss_pred ECC
Q 007283 241 WSP 243 (609)
Q Consensus 241 ~sp 243 (609)
|+|
T Consensus 430 Wsp 432 (435)
T PRK05137 430 WSP 432 (435)
T ss_pred cCC
Confidence 776
No 224
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.44 E-value=1.7e-12 Score=118.70 Aligned_cols=126 Identities=26% Similarity=0.400 Sum_probs=99.2
Q ss_pred CcceeecCCCccCcCceeEEeecCCCCeEEEeCC---CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCC
Q 007283 3 QLAETYTCVPSTERGRGILISGHPKSNSILYTNG---RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSG 79 (609)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~ 79 (609)
+|.+|+.=.|.-++| .++++.++.+.+|+||.. +.|+|||+.+-+....+..|++++.|++|+|+|.+|||+|..|
T Consensus 117 klLhTI~t~~~n~~g-l~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKG 195 (391)
T KOG2110|consen 117 KLLHTIETTPPNPKG-LCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKG 195 (391)
T ss_pred eeehhhhccCCCccc-eEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCc
Confidence 456666644333354 578888888889999964 6899999999999889999999999999999999999999999
Q ss_pred c-EEEEcCCCCceeeEEEeec--ccceeEEEECCCCCEEEEEECCCCcceEEEEEcC
Q 007283 80 T-VRIWGAHNDHVLKKEFRVL--SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWD 133 (609)
Q Consensus 80 ~-i~vWd~~~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 133 (609)
| |||+.+.+++.+ .+|+-- ...|..++|+||+++|.++++... ++++..+
T Consensus 196 TVIRVf~v~~G~kl-~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT---VHiFKL~ 248 (391)
T KOG2110|consen 196 TVIRVFSVPEGQKL-YEFRRGTYPVSIYSLSFSPDSQFLAASSNTET---VHIFKLE 248 (391)
T ss_pred eEEEEEEcCCccEe-eeeeCCceeeEEEEEEECCCCCeEEEecCCCe---EEEEEec
Confidence 8 599999887643 345432 235789999999999999887653 4444443
No 225
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.44 E-value=1.6e-11 Score=109.64 Aligned_cols=152 Identities=22% Similarity=0.343 Sum_probs=106.9
Q ss_pred eEEEECCCCCEEEEEECC---CC-c---ceEEEEEcCC-CCeeEEEec-CCccEEEEEEeeCCCeEEE-EecCCCeEEEE
Q 007283 104 DDLQWSPDGLRIVACGDG---KG-K---SLVRAFMWDS-GTNVGEFDG-HSRRVLSCAFKPSRPFRIA-TCGEDFLVNFY 173 (609)
Q Consensus 104 ~~~~~spdg~~l~~~~~~---~~-~---~~~~~~~~~~-~~~~~~~~~-h~~~v~~~~~~p~~~~~i~-t~~~d~~i~~~ 173 (609)
..+.|+|+|.+|++..+. +. . ....++.++. +.....+.- ..++|.+++|+|++..+++ .|..+..+.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 467899999988876541 11 1 1123344432 223333322 3456999999999886433 34456789999
Q ss_pred eCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEE
Q 007283 174 EGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSD---KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLT 250 (609)
Q Consensus 174 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s 250 (609)
|.. .+....+ +...++.+.|+|+|++|++|+.+ |.+.+||.++.+.+... .|. .++.++|+|||++|++
T Consensus 89 d~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~----~~~-~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 89 DVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF----EHS-DATDVEWSPDGRYLAT 160 (194)
T ss_pred cCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc----ccC-cEEEEEEcCCCCEEEE
Confidence 986 4444444 34567899999999999998753 67999999988877655 233 4789999999999999
Q ss_pred EeC------CCcEEEeecc
Q 007283 251 ASA------DKSAKVWDIS 263 (609)
Q Consensus 251 ~s~------d~~i~iwd~~ 263 (609)
++. |..++||+..
T Consensus 161 a~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EEeccceeccccEEEEEec
Confidence 874 7888999985
No 226
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.44 E-value=3e-12 Score=131.97 Aligned_cols=148 Identities=24% Similarity=0.315 Sum_probs=124.1
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecC
Q 007283 453 SAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLY 532 (609)
Q Consensus 453 ~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~ 532 (609)
+..+++.-++++|+--+.|.+|+....... ..+.+|++.|.++.++-||.++++.|.|+++|+|++.+.+.......+
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p--~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fg 216 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKP--IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFG 216 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCc--ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccc
Confidence 446788889999999999999997633321 247899999999999999999999999999999999887765545778
Q ss_pred CCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccC-CeEEEEEcC-CCeEEEEeCCCcEEEEEcc
Q 007283 533 HTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLG-GVYGLAFTD-EHSVVSSGEDACVRVWRLT 607 (609)
Q Consensus 533 h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~-~v~~~~~s~-~~~l~s~s~D~~i~~W~~~ 607 (609)
|+++|+.+.|+|+ .++|++.|.+.++|+.+.. .+....+|.+ .||.++..+ ...++|++.|+.+++|++.
T Consensus 217 HsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~---~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 217 HSARVWACCFLPN--RIITVGEDCTCRVWGVNGT---QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred ccceeEEEEeccc--eeEEeccceEEEEEecccc---eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 9999999999988 8999999999999987642 2334556764 699999994 5567899999999999874
No 227
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.43 E-value=8.9e-13 Score=123.73 Aligned_cols=228 Identities=16% Similarity=0.270 Sum_probs=175.7
Q ss_pred cEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcC-CCCee
Q 007283 60 ATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWD-SGTNV 138 (609)
Q Consensus 60 v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~-~~~~~ 138 (609)
-..+.++.+|+.|+-|+..|.+-..|..+.+. ..++. ..+.|..+.|-...+++++..- + .++.+| .+..+
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L-~~Ei~-v~Etv~Dv~~LHneq~~AVAQK-~-----y~yvYD~~GtEl 203 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL-HFEIN-VMETVRDVTFLHNEQFFAVAQK-K-----YVYVYDNNGTEL 203 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeeccccee-eeeee-hhhhhhhhhhhcchHHHHhhhh-c-----eEEEecCCCcEE
Confidence 46789999999999999999999999998763 33332 3456888888888777776532 1 244555 45667
Q ss_pred EEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 007283 139 GEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGK 218 (609)
Q Consensus 139 ~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~ 218 (609)
+.++.|. +|..+.|-|.. +.+++++..+.+++-|+..++.+..+.--.+.+..++-+|-+..+-+|...|+|-+|.+.
T Consensus 204 HClk~~~-~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ 281 (545)
T KOG1272|consen 204 HCLKRHI-RVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPN 281 (545)
T ss_pred eehhhcC-chhhhcccchh-heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCC
Confidence 7666554 68889999986 568999999999999999999988887777888889999999899999999999999998
Q ss_pred CCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEE
Q 007283 219 TADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVI 298 (609)
Q Consensus 219 ~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (609)
..+.+..+. .|.+.|.++++.++|+|++|.|.|..++|||++.- .++....++... .....++..+++
T Consensus 282 skePLvKiL---cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~--~ql~t~~tp~~a-------~~ls~SqkglLA 349 (545)
T KOG1272|consen 282 SKEPLVKIL---CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF--YQLHTYRTPHPA-------SNLSLSQKGLLA 349 (545)
T ss_pred CcchHHHHH---hcCCCcceEEECCCCcEEeecccccceeEeeeccc--cccceeecCCCc-------ccccccccccee
Confidence 888766553 69999999999999999999999999999999742 222222221111 112335556677
Q ss_pred EEcCCcEEEEe
Q 007283 299 VSLGGTISIFS 309 (609)
Q Consensus 299 ~~~~g~i~~~~ 309 (609)
.+.+..+.+|.
T Consensus 350 ~~~G~~v~iw~ 360 (545)
T KOG1272|consen 350 LSYGDHVQIWK 360 (545)
T ss_pred eecCCeeeeeh
Confidence 78888899996
No 228
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=2.2e-11 Score=124.43 Aligned_cols=214 Identities=15% Similarity=0.248 Sum_probs=138.4
Q ss_pred ceeEEeecCCCCeEEEeC---C-CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEE-EEeCCC--cEEEEcCCCCc
Q 007283 18 RGILISGHPKSNSILYTN---G-RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIA-SADVSG--TVRIWGAHNDH 90 (609)
Q Consensus 18 ~~~~~~~~~~~~~l~~~~---~-~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~la-s~~~d~--~i~vWd~~~~~ 90 (609)
..+...++|||+.|+|.. + ..+.+|++.+++... +..+.+...+++|||||+.|+ +.+.++ .|.+||+.+++
T Consensus 205 ~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~ 283 (433)
T PRK04922 205 PILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ 283 (433)
T ss_pred ccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC
Confidence 345678999999999874 2 479999998776543 444455566889999999886 555555 58889988765
Q ss_pred eeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcC--CCCeeEEEecCCccEEEEEEeeCCCeEEEEecCC-
Q 007283 91 VLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGED- 167 (609)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d- 167 (609)
. ..+..+......++|+|||++|+.+.+..+.. .++.++ .+.. ..+..+.......+|+|++..++.+...+
T Consensus 284 ~--~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~--~iy~~dl~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~ 358 (433)
T PRK04922 284 L--TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRP--QIYRVAASGGSA-ERLTFQGNYNARASVSPDGKKIAMVHGSGG 358 (433)
T ss_pred e--EECccCCCCccceEECCCCCEEEEEECCCCCc--eEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEECCCC
Confidence 3 23444444557789999999999887644332 344444 3332 22222333445689999998755544433
Q ss_pred -CeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCccccccCcCCCCccceEEEEECC
Q 007283 168 -FLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSD---KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSP 243 (609)
Q Consensus 168 -~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp 243 (609)
..+.+|+..+++......+ .......|+|||++|+..+.+ ..+.+++... .....+. .+.+.+...+|+|
T Consensus 359 ~~~I~v~d~~~g~~~~Lt~~--~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~---~~~g~~~~p~wsp 432 (433)
T PRK04922 359 QYRIAVMDLSTGSVRTLTPG--SLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLV---SADGEVREPAWSP 432 (433)
T ss_pred ceeEEEEECCCCCeEECCCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEcc---cCCCCCCCCccCC
Confidence 3688888776655432222 234467899999988877653 3466677643 3333332 3455677778876
No 229
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.41 E-value=6e-11 Score=107.55 Aligned_cols=253 Identities=15% Similarity=0.296 Sum_probs=168.8
Q ss_pred eeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEe
Q 007283 182 LSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGK-TADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVW 260 (609)
Q Consensus 182 ~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iw 260 (609)
..+.||.+.++....-|...-+.+++.|.+++||--+ .++....+. ......+.++.+.++.+.|+.+-..|++.-+
T Consensus 18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~--~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIY--HYMPSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhh--hhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence 3467888888887777777778999999999999533 233322222 1245678999999999999998888888777
Q ss_pred ecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEE
Q 007283 261 DISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVI 340 (609)
Q Consensus 261 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 340 (609)
.+.+.-.. . ..+.....|...|..+.|. ..+.++
T Consensus 96 s~sedfnk-m--------------------------------------------~~~r~~~~h~~~v~~~if~-~~~e~V 129 (404)
T KOG1409|consen 96 ALSEDFNK-M--------------------------------------------TFLKDYLAHQARVSAIVFS-LTHEWV 129 (404)
T ss_pred Ehhhhhhh-c--------------------------------------------chhhhhhhhhcceeeEEec-CCceeE
Confidence 65421100 0 0011223477777777765 344788
Q ss_pred EEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccC
Q 007283 341 LSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHY 420 (609)
Q Consensus 341 ~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (609)
++++.|..+. |.- ... +..+-
T Consensus 130 ~s~~~dk~~~-~hc------------------~e~----------~~~lg------------------------------ 150 (404)
T KOG1409|consen 130 LSTGKDKQFA-WHC------------------TES----------GNRLG------------------------------ 150 (404)
T ss_pred EEeccccceE-EEe------------------ecc----------CCccc------------------------------
Confidence 8888877653 210 000 00000
Q ss_pred CcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEEC
Q 007283 421 PELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYS 500 (609)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s 500 (609)
.++... +.+++.+.- .+...|...|.|..-.+....+.....+.+|.+.+.+++|.
T Consensus 151 -~Y~~~~---------------------~~t~~~~d~--~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd 206 (404)
T KOG1409|consen 151 -GYNFET---------------------PASALQFDA--LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD 206 (404)
T ss_pred -ceEeec---------------------cCCCCceee--EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc
Confidence 000000 000000000 03445666676766666544554456778999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCC
Q 007283 501 PDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDK 565 (609)
Q Consensus 501 ~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~ 565 (609)
|....+.+|..|..+.+||+.......-++.+|+..|..+.+-+--+.|.+++.||.|.+|+++.
T Consensus 207 ~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 207 PGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred CCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 99999999999999999998766555556788999999999999899999999999999999753
No 230
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.40 E-value=9.2e-11 Score=120.28 Aligned_cols=209 Identities=13% Similarity=0.165 Sum_probs=136.7
Q ss_pred CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCC---CcEEEEcCCCCceeeEEEeecccceeEEEECCCCC
Q 007283 37 RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVS---GTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGL 113 (609)
Q Consensus 37 ~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d---~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~ 113 (609)
..+.++|...... +.+..+...+..++|||||++||.+..+ .+|.+||+.+++.. .+..+.+.+..++|+|||+
T Consensus 170 ~~l~~~d~~g~~~-~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~--~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGANP-QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE--KVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCCCC-EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE--EeecCCCCccceEECCCCC
Confidence 3577888754444 3455566779999999999999976543 47999999876532 2344556677899999999
Q ss_pred EEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCC--eEEEEeCCCCceeeeccCcccce
Q 007283 114 RIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDF--LVNFYEGPPFKFKLSHRGHSNFV 191 (609)
Q Consensus 114 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~--~i~~~~~~~~~~~~~~~~h~~~v 191 (609)
.|+...+..+...+.+++.+.+. ...+..+........|+|++..++.+...++ .+.+++....+.. .+..+...+
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~ 324 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQ-LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYN 324 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCC-EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCc
Confidence 88876544333334444444433 3334444444556789999986555544443 4666676555433 222344556
Q ss_pred EEEEEcCCCCEEEEEeCCC---cEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCC
Q 007283 192 NCVRFSPDGSKFISVSSDK---KGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADK 255 (609)
Q Consensus 192 ~~l~~s~dg~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~ 255 (609)
....|+|+|++|+.++.++ .+.+||..++.. ..+. . ........|+|||++|+..+.++
T Consensus 325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~---~-~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLT---D-TGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred cCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEcc---C-CCCCCCceECCCCCEEEEEEeCC
Confidence 7789999999998888775 788888876543 2221 1 12245678999999888877654
No 231
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.38 E-value=7.1e-07 Score=98.08 Aligned_cols=434 Identities=13% Similarity=0.135 Sum_probs=230.3
Q ss_pred CCCcEEEEECCCCCEEEEEeCCCcEEEE----cCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEc
Q 007283 57 AYPATVARFSPNGEWIASADVSGTVRIW----GAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMW 132 (609)
Q Consensus 57 ~~~v~~~~~sp~g~~las~~~d~~i~vW----d~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 132 (609)
.+.|..+.+-++..-|..+..+|.|-+. +..+..+. .......+|.+++||||++.|+.+.....
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E--~VG~vd~GI~a~~WSPD~Ella~vT~~~~--------- 143 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIE--IVGSVDSGILAASWSPDEELLALVTGEGN--------- 143 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE--EEEEEcCcEEEEEECCCcCEEEEEeCCCE---------
Confidence 4568899999999988888899999999 55554322 23345678999999999998887653221
Q ss_pred CCCCeeEEEecCCccEEEEEEeeCC--CeEEEEecCCCeEEEEeCCCCce--------------eeeccCcccceEEEEE
Q 007283 133 DSGTNVGEFDGHSRRVLSCAFKPSR--PFRIATCGEDFLVNFYEGPPFKF--------------KLSHRGHSNFVNCVRF 196 (609)
Q Consensus 133 ~~~~~~~~~~~h~~~v~~~~~~p~~--~~~i~t~~~d~~i~~~~~~~~~~--------------~~~~~~h~~~v~~l~~ 196 (609)
+..+..+-+.+....+++++ ....++.|+...=.-+-+.-+|. ...+. +...-..++|
T Consensus 144 -----l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISW 217 (928)
T PF04762_consen 144 -----LLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISW 217 (928)
T ss_pred -----EEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEE
Confidence 11122333344455554432 12345555443322222111111 01111 3334567899
Q ss_pred cCCCCEEEEEeC---C---CcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeC---CCcEEEeecccCCC
Q 007283 197 SPDGSKFISVSS---D---KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA---DKSAKVWDISEDNH 267 (609)
Q Consensus 197 s~dg~~l~s~~~---d---~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~---d~~i~iwd~~~~~~ 267 (609)
-.||+++|+.+- . ..++||+-+ |.....-. .-.+--.+++|-|.|.+||+.-. ...|.+|.-+.
T Consensus 218 RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE---~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNG--- 290 (928)
T PF04762_consen 218 RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE---PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNG--- 290 (928)
T ss_pred CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc---cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCC---
Confidence 999999998764 2 478899743 54332221 12233457899999999998864 35677787553
Q ss_pred CceEEEeccCCCCCccceEEEEEEcCC--eEEEEEcCCcEEEEeCCC-CCCCceeeeC-CCCCeEEEEEecCCCCEEEEE
Q 007283 268 GKLKKTLTPSGSGGVDDMLVGCLWQND--FLVIVSLGGTISIFSAND-LEKSPLQLSG-HMKNVTALTVLNIDPKVILSS 343 (609)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~~~~~-~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~t~ 343 (609)
.....+.... ......+....|+.+ .|++ -....|.+|...- .......+.. ....+..+.|++.++..+...
T Consensus 291 -LrhgeF~l~~-~~~~~~v~~l~Wn~ds~iLAv-~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~ 367 (928)
T PF04762_consen 291 -LRHGEFTLRF-DPEEEKVIELAWNSDSEILAV-WLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVL 367 (928)
T ss_pred -cEeeeEecCC-CCCCceeeEEEECCCCCEEEE-EecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEE
Confidence 2233332221 011223456678744 4444 4455589986421 1111122221 223344577887777777777
Q ss_pred ecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccc-eEEEEeccCCccccccccccCCCCceeEeeccCCc
Q 007283 344 SYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDN-KIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPE 422 (609)
Q Consensus 344 s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (609)
+.+|.+...+..-.... . ... ...+.-.++..|+ ++....+... ..+++.
T Consensus 368 t~~g~~~~~~~~~~v~~---s-~~~------~~~D~g~vaVIDG~~lllTpf~~a--------~VPPPM----------- 418 (928)
T PF04762_consen 368 TSNGQYEIYDFAWDVSR---S-PGS------SPNDNGTVAVIDGNKLLLTPFRRA--------VVPPPM----------- 418 (928)
T ss_pred ecCCcEEEEEEEEEEEe---c-CCC------CccCceEEEEEeCCeEEEeccccc--------CCCchH-----------
Confidence 76666654322110000 0 000 0000111111111 1111111000 000000
Q ss_pred EEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeee------eEEE---------
Q 007283 423 LVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTE------EAVL--------- 487 (609)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~------~~~~--------- 487 (609)
....+....++.+++|++++..+|+-..||.|.+|......... ...+
T Consensus 419 -----------------s~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (928)
T PF04762_consen 419 -----------------SSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISD 481 (928)
T ss_pred -----------------hceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccc
Confidence 01223345678999999999889999999999999864332110 0001
Q ss_pred -ecCCCceEEEEECCCCCEEEEEeCC---CeEEEEEccCCc--eEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEE
Q 007283 488 -EKHRGAVSVIRYSPDVSMFASGDVN---REAIVWDRVSRE--VKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIY 561 (609)
Q Consensus 488 -~~h~~~i~~v~~s~~~~~l~s~s~d---~~v~iwd~~~~~--~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw 561 (609)
..-...+..+.|..+..+++..+.+ ..+.+++....+ ........-...+..+...++...++.-..||.|...
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~ 561 (928)
T PF04762_consen 482 SELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQL 561 (928)
T ss_pred cccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEe
Confidence 1113456788887777776666554 567777763222 1122222234445556666665546666778877765
Q ss_pred Ec
Q 007283 562 EI 563 (609)
Q Consensus 562 ~~ 563 (609)
+.
T Consensus 562 ~~ 563 (928)
T PF04762_consen 562 SS 563 (928)
T ss_pred ec
Confidence 44
No 232
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.37 E-value=7.5e-11 Score=105.34 Aligned_cols=147 Identities=16% Similarity=0.386 Sum_probs=97.8
Q ss_pred EEEcCCCCEEEEEeC----------CCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEE--EeCCCeEEEEEc
Q 007283 453 SAIAPDGSEAIIGSQ----------DGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFAS--GDVNREAIVWDR 520 (609)
Q Consensus 453 ~~~sp~g~~l~~gs~----------dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s--~s~d~~v~iwd~ 520 (609)
+.++|+|.+|++-.. -+...+|.++..............++|.+++|+|+|..+|+ |..++.+.+||+
T Consensus 11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~ 90 (194)
T PF08662_consen 11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDV 90 (194)
T ss_pred EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcC
Confidence 345666665544322 13455665533222111222234567999999999998755 457789999998
Q ss_pred cCCceEEeeecCCCCceEEEEECCCCcEEEEEeCC---CeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEe
Q 007283 521 VSREVKLKNMLYHTARINCLAWSPNNSMVATGSLD---TCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSG 596 (609)
Q Consensus 521 ~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D---~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s 596 (609)
... .+. ..+...++.+.|||+|++|++|+.+ |.|.+||+... ..+. ..+...+..++|| |+++++++.
T Consensus 91 ~~~--~i~--~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~--~~i~--~~~~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 91 KGK--KIF--SFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK--KKIS--TFEHSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred ccc--EeE--eecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC--EEee--ccccCcEEEEEEcCCCCEEEEEE
Confidence 532 222 2346678999999999999998754 56999999743 2222 2334457899999 788888765
Q ss_pred ------CCCcEEEEEcc
Q 007283 597 ------EDACVRVWRLT 607 (609)
Q Consensus 597 ------~D~~i~~W~~~ 607 (609)
.|..+++|++.
T Consensus 163 t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 163 TSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred eccceeccccEEEEEec
Confidence 48999999975
No 233
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.37 E-value=1.3e-10 Score=121.91 Aligned_cols=254 Identities=17% Similarity=0.226 Sum_probs=145.4
Q ss_pred CCccceEEEEECCCC-CeEEEEeCCCcEEEeecccCCCC----ceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcE
Q 007283 231 GHKGSVYAVSWSPDG-KQVLTASADKSAKVWDISEDNHG----KLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTI 305 (609)
Q Consensus 231 ~h~~~V~~l~~spd~-~~l~s~s~d~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 305 (609)
.|+..|..++.++.. .+++|||.||+|++|+.+.-... +...++... +.....+..+.+++++++++.||.|
T Consensus 1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~---~sr~~~vt~~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPE---GSRVEKVTMCGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEecc---CCceEEEEeccCCCeEEEEcCCCeE
Confidence 588888899988765 99999999999999998642111 122222221 1122344555678899999999999
Q ss_pred EEEeCCCCCCCce--e----eeCCC-CCeEEE-EEecCCC-CEEEEEecCCcEEEEecCccccceeccccccceeEeeee
Q 007283 306 SIFSANDLEKSPL--Q----LSGHM-KNVTAL-TVLNIDP-KVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAI 376 (609)
Q Consensus 306 ~~~~~~~~~~~~~--~----~~~h~-~~v~~~-~~~~~~~-~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~ 376 (609)
++..++....... + ...+. +.+..+ ++..... ..++-+..-+.|..||.....
T Consensus 1123 ~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~------------------ 1184 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH------------------ 1184 (1431)
T ss_pred EEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh------------------
Confidence 9998875311100 0 00010 111111 1111111 133333333334444321100
Q ss_pred CCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEc
Q 007283 377 EEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIA 456 (609)
Q Consensus 377 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 456 (609)
.+|.. + ... -...+++++++
T Consensus 1185 -----------~~w~l--k----------------------------------------------~~~-~hG~vTSi~id 1204 (1431)
T KOG1240|consen 1185 -----------DAWRL--K----------------------------------------------NQL-RHGLVTSIVID 1204 (1431)
T ss_pred -----------hHHhh--h----------------------------------------------cCc-cccceeEEEec
Confidence 00000 0 000 01348899999
Q ss_pred CCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCC---CCEEEEEe--CCCeEEEEEccCCceEEeeec
Q 007283 457 PDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPD---VSMFASGD--VNREAIVWDRVSREVKLKNML 531 (609)
Q Consensus 457 p~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~---~~~l~s~s--~d~~v~iwd~~~~~~~~~~~~ 531 (609)
|.+.++++|+.-|.+-+||++-+....... ..+..+|..|...|- ....++++ ..+.+-+|+++++......+.
T Consensus 1205 p~~~WlviGts~G~l~lWDLRF~~~i~sw~-~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~ 1283 (1431)
T KOG1240|consen 1205 PWCNWLVIGTSRGQLVLWDLRFRVPILSWE-HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWA 1283 (1431)
T ss_pred CCceEEEEecCCceEEEEEeecCceeeccc-CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEc
Confidence 999999999999999999997554332222 234466766665443 34555544 578899999887644322111
Q ss_pred C------------------CCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCC
Q 007283 532 Y------------------HTARINCLAWSPNNSMVATGSLDTCVIIYEIDKP 566 (609)
Q Consensus 532 ~------------------h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~ 566 (609)
. +.-....+.+-..+.++.+|+.|..|+.||...+
T Consensus 1284 s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1284 SDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred CCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 1 1112233444445678899999999999998764
No 234
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=2.5e-10 Score=115.57 Aligned_cols=218 Identities=14% Similarity=0.124 Sum_probs=134.4
Q ss_pred eEEeecCCCCe--EEEe---CC-CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEe-CCC----cEEEEcCCC
Q 007283 20 ILISGHPKSNS--ILYT---NG-RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASAD-VSG----TVRIWGAHN 88 (609)
Q Consensus 20 ~~~~~~~~~~~--l~~~---~~-~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~-~d~----~i~vWd~~~ 88 (609)
+.=.++|||+. ++|. ++ ..|.+.++.++.... +....+.....+|||||+.||..+ .+| .+.+|++..
T Consensus 188 ~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~ 266 (428)
T PRK01029 188 ITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLET 266 (428)
T ss_pred ccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeeccc
Confidence 34479999876 4443 23 578999998776543 333455667799999999998544 233 345577654
Q ss_pred Cc-eeeEEEeec-ccceeEEEECCCCCEEEEEECCCCcceEEEEEcCC---CCeeEEEecCCccEEEEEEeeCCCeEEEE
Q 007283 89 DH-VLKKEFRVL-SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDS---GTNVGEFDGHSRRVLSCAFKPSRPFRIAT 163 (609)
Q Consensus 89 ~~-~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~h~~~v~~~~~~p~~~~~i~t 163 (609)
+. .....+... .......+|||||++|+.+.+..+.. ++|.++. +.....+..+...+....|+|+|..++.+
T Consensus 267 g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~--~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~ 344 (428)
T PRK01029 267 GAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRP--RIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFC 344 (428)
T ss_pred CCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCc--eEEEEECcccccceEEeccCCCCccceeECCCCCEEEEE
Confidence 21 111222222 23456789999999999887644332 3444432 22234444455567788999999875555
Q ss_pred ecCC--CeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCccccccCcCCCCccceEE
Q 007283 164 CGED--FLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSS---DKKGIIYDGKTADKIGELSPEDGHKGSVYA 238 (609)
Q Consensus 164 ~~~d--~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~ 238 (609)
...+ ..+.+||...++......+ ...+....|+|||+.|+..+. ...+.++|...++.. .+. ...+.+..
T Consensus 345 ~~~~g~~~I~v~dl~~g~~~~Lt~~-~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~-~Lt---~~~g~~~~ 419 (428)
T PRK01029 345 SVIKGVRQICVYDLATGRDYQLTTS-PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR-KIV---IGSGEKRF 419 (428)
T ss_pred EcCCCCcEEEEEECCCCCeEEccCC-CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eee---cCCCcccC
Confidence 4433 4678888877765433322 335677899999998875543 346777887766532 222 12345667
Q ss_pred EEECCCC
Q 007283 239 VSWSPDG 245 (609)
Q Consensus 239 l~~spd~ 245 (609)
.+|+|..
T Consensus 420 p~Ws~~~ 426 (428)
T PRK01029 420 PSWGAFP 426 (428)
T ss_pred ceecCCC
Confidence 7888753
No 235
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=7e-09 Score=100.54 Aligned_cols=110 Identities=21% Similarity=0.427 Sum_probs=83.7
Q ss_pred CCceeEEEEcCCCCEEEE--EeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeC---CCeEEEEEcc
Q 007283 447 RFPVTASAIAPDGSEAII--GSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDV---NREAIVWDRV 521 (609)
Q Consensus 447 ~~~~~~~~~sp~g~~l~~--gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~---d~~v~iwd~~ 521 (609)
..||.++.++|+++.+++ |-.--.+.|||++.. .++.--+++=+++-|+|.|.+++-++. -|.|-+||+.
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-----~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~ 344 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-----PVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVP 344 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-----EeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEecc
Confidence 468999999999987655 445568999988654 334445678899999999999998875 5778999998
Q ss_pred CCceEEeeecCCCCceEEEEECCCCcEEEEEeC------CCeEEEEEcC
Q 007283 522 SREVKLKNMLYHTARINCLAWSPNNSMVATGSL------DTCVIIYEID 564 (609)
Q Consensus 522 ~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~------D~~v~vw~~~ 564 (609)
+.+.. .... ...-+-++|+|||+++.|+.. |+.++||++.
T Consensus 345 n~K~i-~~~~--a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 345 NRKLI-AKFK--AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred chhhc-cccc--cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 75432 2222 234456899999999999874 6889999985
No 236
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=5e-10 Score=114.41 Aligned_cols=215 Identities=15% Similarity=0.119 Sum_probs=131.5
Q ss_pred EEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeC-CC--cEEEEcCCCCceeeEEEeecccceeEEEECCCCCE
Q 007283 38 SVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADV-SG--TVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLR 114 (609)
Q Consensus 38 ~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~-d~--~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 114 (609)
.+.+.|...... +.+..+...+..++|||||++||..+. ++ .|.+||+.+++. ..+....+.....+|||||++
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCCE
Confidence 566777655443 335556778999999999999986543 33 477778876653 223333444567899999999
Q ss_pred EEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCe--EEEEeCCCCceeee-ccCcccce
Q 007283 115 IVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFL--VNFYEGPPFKFKLS-HRGHSNFV 191 (609)
Q Consensus 115 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~--i~~~~~~~~~~~~~-~~~h~~~v 191 (609)
|+.+.+..+...+.+++.+.+. ...+..+.......+|+|++..++.+...++. +..++...++.... +.++ ..
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~-~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~--~~ 352 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKA-LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE--QN 352 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC--CC
Confidence 9876544333333334443333 33444555556778999999876666655544 44456655544332 2332 23
Q ss_pred EEEEEcCCCCEEEEEeCC-C--cEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCC-Cc--EEEeecc
Q 007283 192 NCVRFSPDGSKFISVSSD-K--KGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASAD-KS--AKVWDIS 263 (609)
Q Consensus 192 ~~l~~s~dg~~l~s~~~d-~--~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d-~~--i~iwd~~ 263 (609)
....|+|||++|+..+.+ + .+.++|..+++. ..+.. . .......|+|||++|+..+.+ +. +.+++..
T Consensus 353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~lt~--~--~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM-QVLTS--T--RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred cCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-EEccC--C--CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 456899999988776653 3 345567766653 22221 1 122345899999988776543 33 5555653
No 237
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.33 E-value=3.6e-09 Score=104.39 Aligned_cols=329 Identities=16% Similarity=0.093 Sum_probs=163.5
Q ss_pred EEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEE
Q 007283 160 RIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAV 239 (609)
Q Consensus 160 ~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l 239 (609)
.+++-..++.+.+.|..+.+....+......-..+.|+|||+++.+++.|+.+.++|..+.+.+.++.. ...-.++
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~----G~~~~~i 83 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV----GGNPRGI 83 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-----SSEEEEE
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec----CCCcceE
Confidence 345556778899999998887777654433334578999999999999999999999999998887742 2346789
Q ss_pred EECCCCCeEEEEe-CCCcEEEeecccCCCCceEEEeccCCC-C-CccceEEEEE--EcCC-eEEEEEcCCcEEEEeCCCC
Q 007283 240 SWSPDGKQVLTAS-ADKSAKVWDISEDNHGKLKKTLTPSGS-G-GVDDMLVGCL--WQND-FLVIVSLGGTISIFSANDL 313 (609)
Q Consensus 240 ~~spd~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~--~~~~-~~~~~~~~g~i~~~~~~~~ 313 (609)
++||||++++++. .++.+.++|... .+..+.+..... . .......+.. .... +++..-..+.+.+.++.+.
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~t---le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAET---LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP 160 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT-----EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred EEcCCCCEEEEEecCCCceeEecccc---ccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence 9999999988775 589999999763 444444422110 0 0111122222 2233 3333344466666665543
Q ss_pred CCCceeeeCCCCCeEEEEEecCCCCE-EEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEE
Q 007283 314 EKSPLQLSGHMKNVTALTVLNIDPKV-ILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRV 392 (609)
Q Consensus 314 ~~~~~~~~~h~~~v~~~~~~~~~~~~-~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 392 (609)
.........-........+.+ ++++ +++.-.++.|-+++....... ..+
T Consensus 161 ~~~~~~~i~~g~~~~D~~~dp-dgry~~va~~~sn~i~viD~~~~k~v-----------------------------~~i 210 (369)
T PF02239_consen 161 KNLKVTTIKVGRFPHDGGFDP-DGRYFLVAANGSNKIAVIDTKTGKLV-----------------------------ALI 210 (369)
T ss_dssp SCEEEEEEE--TTEEEEEE-T-TSSEEEEEEGGGTEEEEEETTTTEEE-----------------------------EEE
T ss_pred cccceeeecccccccccccCc-ccceeeecccccceeEEEeeccceEE-----------------------------EEe
Confidence 222111111222333444433 3344 444455666666654332100 000
Q ss_pred eccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEE
Q 007283 393 SLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLR 472 (609)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~ 472 (609)
+. +.. . ++....-.+|. .. .++.... -.+...++.-....+.
T Consensus 211 ~~--g~~------p---~~~~~~~~php--------~~-----------------g~vw~~~--~~~~~~~~~ig~~~v~ 252 (369)
T PF02239_consen 211 DT--GKK------P---HPGPGANFPHP--------GF-----------------GPVWATS--GLGYFAIPLIGTDPVS 252 (369)
T ss_dssp E---SSS------B---EETTEEEEEET--------TT-----------------EEEEEEE--BSSSSEEEEEE--TTT
T ss_pred ec--ccc------c---cccccccccCC--------Cc-----------------ceEEeec--cccceecccccCCccc
Confidence 00 000 0 00000000000 00 0111111 1111121111223444
Q ss_pred EEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEE----eCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcE
Q 007283 473 VYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASG----DVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSM 548 (609)
Q Consensus 473 iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~----s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~ 548 (609)
+|+....+. .+.+....++ .-+..+||+.++.+. ....+|.++|..+.+............+..+.|++||++
T Consensus 253 v~d~~~wkv--v~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~ 329 (369)
T PF02239_consen 253 VHDDYAWKV--VKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKE 329 (369)
T ss_dssp -STTTBTSE--EEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSE
T ss_pred cchhhcCeE--EEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCE
Confidence 565554443 2334444444 777889999999988 456889999987764432211112234889999999997
Q ss_pred EEEEeC--CCeEEEEEcCCC
Q 007283 549 VATGSL--DTCVIIYEIDKP 566 (609)
Q Consensus 549 l~s~s~--D~~v~vw~~~~~ 566 (609)
+..+.. ++.|.+||..+.
T Consensus 330 v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 330 VWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp EEEEEE--TTEEEEEETTTT
T ss_pred EEEEEecCCCEEEEEECCCc
Confidence 654433 337999997653
No 238
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=6.2e-10 Score=114.22 Aligned_cols=215 Identities=15% Similarity=0.132 Sum_probs=135.6
Q ss_pred EEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCC---CcEEEEcCCCCceeeEEEeecccceeEEEECCCCCE
Q 007283 38 SVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVS---GTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLR 114 (609)
Q Consensus 38 ~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d---~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 114 (609)
.+.+.|...... +.+..|...+..++|||||+.||..+.+ ..|.+|++.+++. ..+....+.+...+|||||++
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCCE
Confidence 477778765544 3355667789999999999999876543 3588889887653 223334455667999999999
Q ss_pred EEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCC--eEEEEeCCCCceeee-ccCcccce
Q 007283 115 IVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDF--LVNFYEGPPFKFKLS-HRGHSNFV 191 (609)
Q Consensus 115 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~--~i~~~~~~~~~~~~~-~~~h~~~v 191 (609)
|+...+..+...+.+++.+.+. ...+..+........|+|++..++.+...++ .+..++...++.... +.+ ...
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~--~~~ 333 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQ-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG--NYN 333 (430)
T ss_pred EEEEEccCCCceEEEEECCCCC-eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC--CCc
Confidence 9866543333334444444443 3334455555667899999987555554444 455566655554322 222 223
Q ss_pred EEEEEcCCCCEEEEEeCC-C--cEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCC-C--cEEEeecc
Q 007283 192 NCVRFSPDGSKFISVSSD-K--KGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASAD-K--SAKVWDIS 263 (609)
Q Consensus 192 ~~l~~s~dg~~l~s~~~d-~--~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d-~--~i~iwd~~ 263 (609)
....|+|||+.|+..+.+ + .+.++|..+++. ..+.. ........|+|||++++..+.+ + .+.++++.
T Consensus 334 ~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~----~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 334 ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTD----TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred cceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccC----CCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 456899999998877653 3 477888877653 23321 1122356899999988877653 3 35555553
No 239
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.32 E-value=7.5e-10 Score=100.52 Aligned_cols=116 Identities=19% Similarity=0.341 Sum_probs=79.0
Q ss_pred ceeEEEEcC-CCCEEEEEeCCCcEEEEEecCCeeee--eEE------------EecCCCceEEEEECCCCCEEEEEeCCC
Q 007283 449 PVTASAIAP-DGSEAIIGSQDGKLRVYSIRGDTLTE--EAV------------LEKHRGAVSVIRYSPDVSMFASGDVNR 513 (609)
Q Consensus 449 ~~~~~~~sp-~g~~l~~gs~dg~i~iw~~~~~~~~~--~~~------------~~~h~~~i~~v~~s~~~~~l~s~s~d~ 513 (609)
.+++..|+| ....++-.+..|+||+-|++...+-. ... +.+--..|..+.||++|+++++-+. .
T Consensus 215 VITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-l 293 (433)
T KOG1354|consen 215 VITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-L 293 (433)
T ss_pred HHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-c
Confidence 356677888 44567778889999999997432200 000 1111246889999999999998654 5
Q ss_pred eEEEEEccCCceEEeeecCCC------------Cc---eEEEEECCCCcEEEEEeCCCeEEEEEcCC
Q 007283 514 EAIVWDRVSREVKLKNMLYHT------------AR---INCLAWSPNNSMVATGSLDTCVIIYEIDK 565 (609)
Q Consensus 514 ~v~iwd~~~~~~~~~~~~~h~------------~~---i~~l~~s~d~~~l~s~s~D~~v~vw~~~~ 565 (609)
++++||+.-....+.....|. +. -..++||.++.+++||+..+..++++.+.
T Consensus 294 tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 294 TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred eeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCC
Confidence 899999743322222222232 22 24589999999999999999999999654
No 240
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=3.7e-10 Score=115.38 Aligned_cols=214 Identities=15% Similarity=0.207 Sum_probs=129.1
Q ss_pred eEEeecCCCCeEEEeC---C-CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEE-EEeCCCc--EEEEcCCCCcee
Q 007283 20 ILISGHPKSNSILYTN---G-RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIA-SADVSGT--VRIWGAHNDHVL 92 (609)
Q Consensus 20 ~~~~~~~~~~~l~~~~---~-~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~la-s~~~d~~--i~vWd~~~~~~~ 92 (609)
+...++|||+.|+|.. + ..++++|+.+++... +..-.+....++|||||+.|| +.+.++. |.+||+.+++.
T Consensus 221 ~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~- 298 (448)
T PRK04792 221 MSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL- 298 (448)
T ss_pred cCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-
Confidence 4678999999999862 2 478899998766432 222233455789999999887 4566775 56667766543
Q ss_pred eEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEE
Q 007283 93 KKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNF 172 (609)
Q Consensus 93 ~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~ 172 (609)
..+..+.......+|+|||++|+...+..+...+..++.+.+... .+..+.......+|+|++..++.+...++...+
T Consensus 299 -~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I 376 (448)
T PRK04792 299 -TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNI 376 (448)
T ss_pred -EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EEecCCCCCcCeeECCCCCEEEEEEecCCceEE
Confidence 234444455678899999999998876444333333333344322 222122223457899999876565544444444
Q ss_pred --EeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCC-Cc--EEEEeCCCCccccccCcCCCCccceEEEEECC
Q 007283 173 --YEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSD-KK--GIIYDGKTADKIGELSPEDGHKGSVYAVSWSP 243 (609)
Q Consensus 173 --~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d-~~--i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp 243 (609)
++...++........ ......|+|||+.|+..+.+ +. +.+++. ++.....+. .+.+.+...+|+|
T Consensus 377 ~~~dl~~g~~~~lt~~~--~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~---~~~g~~~~p~Wsp 446 (448)
T PRK04792 377 ARQDLETGAMQVLTSTR--LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLP---AGQGEVKSPAWSP 446 (448)
T ss_pred EEEECCCCCeEEccCCC--CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECc---CCCCCcCCCccCC
Confidence 565555443222221 12244799999988776643 33 555565 444444342 3455677788887
No 241
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=1.3e-09 Score=105.63 Aligned_cols=201 Identities=16% Similarity=0.178 Sum_probs=127.1
Q ss_pred cCCCCcEEEEECCCCCEE-EEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcC
Q 007283 55 EHAYPATVARFSPNGEWI-ASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWD 133 (609)
Q Consensus 55 ~h~~~v~~~~~sp~g~~l-as~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 133 (609)
+|.+--+.|..||||+|| |||-....|+++|+.+-. ++.+=......|...-.|.|-..++....+.. + ...
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS-LKFERhlDae~V~feiLsDD~SK~v~L~~DR~---I---efH 121 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS-LKFERHLDAEVVDFEILSDDYSKSVFLQNDRT---I---EFH 121 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccce-eeeeecccccceeEEEeccchhhheEeecCce---e---eeh
Confidence 566777889999999998 567788999999997643 22211122445655556666444333322211 0 000
Q ss_pred CCCeeE-EEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcE
Q 007283 134 SGTNVG-EFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKG 212 (609)
Q Consensus 134 ~~~~~~-~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i 212 (609)
.....+ .+. -...-..+.++.-..-+++.|+.. .+.-.+.+.+.....+.-....++++..++-..+|++|+.+|.+
T Consensus 122 ak~G~hy~~R-IP~~GRDm~y~~~scDly~~gsg~-evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~V 199 (703)
T KOG2321|consen 122 AKYGRHYRTR-IPKFGRDMKYHKPSCDLYLVGSGS-EVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVV 199 (703)
T ss_pred hhcCeeeeee-cCcCCccccccCCCccEEEeecCc-ceEEEEccccccccccccccccceeeeecCccceEEecccCceE
Confidence 000000 000 001112334432222223333333 34444667777777777677889999999998899999999999
Q ss_pred EEEeCCCCccccccCcC---CCCcc-----ceEEEEECCCCCeEEEEeCCCcEEEeeccc
Q 007283 213 IIYDGKTADKIGELSPE---DGHKG-----SVYAVSWSPDGKQVLTASADKSAKVWDISE 264 (609)
Q Consensus 213 ~iwd~~~~~~~~~~~~~---~~h~~-----~V~~l~~spd~~~l~s~s~d~~i~iwd~~~ 264 (609)
-.||.++.....++... ..|.+ .|+++.|+.+|-.++.|+.+|.+.|||++.
T Consensus 200 EfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa 259 (703)
T KOG2321|consen 200 EFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRA 259 (703)
T ss_pred EEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEccc
Confidence 99999987766554321 23444 499999999999999999999999999975
No 242
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.29 E-value=1.1e-10 Score=105.96 Aligned_cols=213 Identities=19% Similarity=0.314 Sum_probs=149.3
Q ss_pred CCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcC-CCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCc
Q 007283 46 NPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGA-HNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGK 124 (609)
Q Consensus 46 ~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~-~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~ 124 (609)
.+..++.++||.+.|+....-|-..-+.+.+.|.++|||-- +.++.-.........+++++++.++..+|++.-++..
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt- 91 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT- 91 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce-
Confidence 34456778999999999888888888999999999999943 2333211122345678999999999988876554332
Q ss_pred ceEEEEEcC----CCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEE---------------------------
Q 007283 125 SLVRAFMWD----SGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFY--------------------------- 173 (609)
Q Consensus 125 ~~~~~~~~~----~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~--------------------------- 173 (609)
+.-+... +-..+.....|..+|..+-|+..-.. +++++.|..+.+-
T Consensus 92 --vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~-V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~ 168 (404)
T KOG1409|consen 92 --VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEW-VLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYA 168 (404)
T ss_pred --EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCcee-EEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEE
Confidence 1112211 12223445577888888877654443 5555555443221
Q ss_pred -e-------------CCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEE
Q 007283 174 -E-------------GPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAV 239 (609)
Q Consensus 174 -~-------------~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l 239 (609)
+ ......+..+.+|...+.+++|.|....|.+|..|..+++||+--.+.+... ..+|...|..+
T Consensus 169 fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~e--l~gh~~kV~~l 246 (404)
T KOG1409|consen 169 FVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYE--LQGHNDKVQAL 246 (404)
T ss_pred EecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeee--eccchhhhhhh
Confidence 0 0112233457889999999999999999999999999999997655443322 34899999999
Q ss_pred EECCCCCeEEEEeCCCcEEEeeccc
Q 007283 240 SWSPDGKQVLTASADKSAKVWDISE 264 (609)
Q Consensus 240 ~~spd~~~l~s~s~d~~i~iwd~~~ 264 (609)
...+--+.|.+++.||.|-+|+++.
T Consensus 247 ~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 247 SYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhhheeeeeccCCCeEEEEeccc
Confidence 9888889999999999999999864
No 243
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=8.8e-10 Score=113.13 Aligned_cols=217 Identities=13% Similarity=0.124 Sum_probs=133.0
Q ss_pred ceeEEeecCCCCeEEEeC---C-CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEE-EEeCCC--cEEEEcCCCCc
Q 007283 18 RGILISGHPKSNSILYTN---G-RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIA-SADVSG--TVRIWGAHNDH 90 (609)
Q Consensus 18 ~~~~~~~~~~~~~l~~~~---~-~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~la-s~~~d~--~i~vWd~~~~~ 90 (609)
......++|||+.|+|.. + ..+.++++.+++... +....+.+..++|||||++|+ +.+.++ .|.+||+.+++
T Consensus 200 ~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~ 278 (430)
T PRK00178 200 PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ 278 (430)
T ss_pred ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 345778999999998863 2 478999998776543 333345566799999999887 555555 57777887765
Q ss_pred eeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCC--
Q 007283 91 VLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDF-- 168 (609)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~-- 168 (609)
. ..+..+........|+|||++|+...+..+...+..++.+.+.. ..+...........|+|++..++.+...++
T Consensus 279 ~--~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~-~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~ 355 (430)
T PRK00178 279 L--SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA-ERVTFVGNYNARPRLSADGKTLVMVHRQDGNF 355 (430)
T ss_pred e--EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccceEECCCCCEEEEEEccCCce
Confidence 3 23444455567789999999998887654433333334334432 222211222345689999987555554443
Q ss_pred eEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCC-C--cEEEEeCCCCccccccCcCCCCccceEEEEECCC
Q 007283 169 LVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSD-K--KGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD 244 (609)
Q Consensus 169 ~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d-~--~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd 244 (609)
.+.++|..+++........ ......|+|||+.++..+.+ + .+.+.+... .....+. .+.+.+...+|+|-
T Consensus 356 ~l~~~dl~tg~~~~lt~~~--~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~---~~~g~~~~p~ws~~ 428 (430)
T PRK00178 356 HVAAQDLQRGSVRILTDTS--LDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLP---TAQGEVREPSWSPY 428 (430)
T ss_pred EEEEEECCCCCEEEccCCC--CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECc---CCCCCcCCCccCCC
Confidence 4666777665543322221 22345899999988877654 3 355556533 2222232 23456677777763
No 244
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.29 E-value=9.9e-09 Score=101.50 Aligned_cols=246 Identities=15% Similarity=0.195 Sum_probs=154.9
Q ss_pred cCceeEEeecCCCCeEEEeC-----CCEEEEEeCCCC-cccccc---ccCCCCcEEEEECCCCCEEEEEe-CCCcEEEEc
Q 007283 16 RGRGILISGHPKSNSILYTN-----GRSVIILDLSNP-LQVSIY---GEHAYPATVARFSPNGEWIASAD-VSGTVRIWG 85 (609)
Q Consensus 16 ~~~~~~~~~~~~~~~l~~~~-----~~~~~i~~~~~~-~~~~~~---~~h~~~v~~~~~sp~g~~las~~-~d~~i~vWd 85 (609)
-+.|.-+..+|+++.|+..+ ...|..|++... ..+..+ ......--.++++|+|++|+.+. .+|+|.+++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 34556788899998776653 248888888664 222221 11223356789999999999887 589999999
Q ss_pred CCCCceeeEE--Eeec-----------ccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCe-e---EEEe-cCCcc
Q 007283 86 AHNDHVLKKE--FRVL-----------SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTN-V---GEFD-GHSRR 147 (609)
Q Consensus 86 ~~~~~~~~~~--~~~~-----------~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~-~---~~~~-~h~~~ 147 (609)
+.....+... ...+ ....-.+.|+|||++++++.-+.+ .+.++.++.... + ..+. .....
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D--~v~~~~~~~~~~~l~~~~~~~~~~G~G 193 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGAD--RVYVYDIDDDTGKLTPVDSIKVPPGSG 193 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTT--EEEEEEE-TTS-TEEEEEEEECSTTSS
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCC--EEEEEEEeCCCceEEEeeccccccCCC
Confidence 9864322221 1111 123467999999999998876655 467777776541 2 2222 22345
Q ss_pred EEEEEEeeCCCeEEEEecCCCeEEEEeCC--CCcee--ee---c-cC--cccceEEEEEcCCCCEEEEEe-CCCcEEEEe
Q 007283 148 VLSCAFKPSRPFRIATCGEDFLVNFYEGP--PFKFK--LS---H-RG--HSNFVNCVRFSPDGSKFISVS-SDKKGIIYD 216 (609)
Q Consensus 148 v~~~~~~p~~~~~i~t~~~d~~i~~~~~~--~~~~~--~~---~-~~--h~~~v~~l~~s~dg~~l~s~~-~d~~i~iwd 216 (609)
-..+.|+|++.+.++++-.+..+.+++.. .++.. .. + .+ .......++++|||++|.++. ....|.+|+
T Consensus 194 PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~ 273 (345)
T PF10282_consen 194 PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFD 273 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEE
T ss_pred CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEE
Confidence 67899999999888888888889888765 33222 11 1 11 122578899999999876655 466889998
Q ss_pred CC--CCccccccCcCCCCccceEEEEECCCCCeEEEEe-CCCcEEEeeccc
Q 007283 217 GK--TADKIGELSPEDGHKGSVYAVSWSPDGKQVLTAS-ADKSAKVWDISE 264 (609)
Q Consensus 217 ~~--~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s-~d~~i~iwd~~~ 264 (609)
+. +++ +..+.........-..+.++|+|++|+++. .++.|.+|+++.
T Consensus 274 ~d~~~g~-l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 274 LDPATGT-LTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp ECTTTTT-EEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred EecCCCc-eEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 73 233 222111111122367899999999988886 467899998753
No 245
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.29 E-value=3.1e-07 Score=90.87 Aligned_cols=183 Identities=16% Similarity=0.179 Sum_probs=110.5
Q ss_pred CcEEEEcCC--CCceeeEEEeecccceeEEEECCCCCEEEEEECCC-CcceEEEEEcCCC-CeeE---EEecCCccEEEE
Q 007283 79 GTVRIWGAH--NDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGK-GKSLVRAFMWDSG-TNVG---EFDGHSRRVLSC 151 (609)
Q Consensus 79 ~~i~vWd~~--~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~-~~~~~~~~~~~~~-~~~~---~~~~h~~~v~~~ 151 (609)
+.|.+|+++ +++...............++++|++++|.++.... ....+..+.++.. ..+. ...........+
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i 92 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI 92 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence 678888883 33322111122345678899999999999998753 3334555666554 2222 222233445678
Q ss_pred EEeeCCCeEEEEecCCCeEEEEeCCC-Cceeee---c----------cCcccceEEEEEcCCCCEEEEEeC-CCcEEEEe
Q 007283 152 AFKPSRPFRIATCGEDFLVNFYEGPP-FKFKLS---H----------RGHSNFVNCVRFSPDGSKFISVSS-DKKGIIYD 216 (609)
Q Consensus 152 ~~~p~~~~~i~t~~~d~~i~~~~~~~-~~~~~~---~----------~~h~~~v~~l~~s~dg~~l~s~~~-d~~i~iwd 216 (609)
+++|++.+++++...++.+.+++... ++.... . +.......++.|+|||+++++... ...|.+|+
T Consensus 93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~ 172 (345)
T PF10282_consen 93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYD 172 (345)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEE
Confidence 99999998777777789999997654 332221 1 112245789999999998776643 44788888
Q ss_pred CCCCcc-cc---ccCcCCCCccceEEEEECCCCCeEEEEeC-CCcEEEeecc
Q 007283 217 GKTADK-IG---ELSPEDGHKGSVYAVSWSPDGKQVLTASA-DKSAKVWDIS 263 (609)
Q Consensus 217 ~~~~~~-~~---~~~~~~~h~~~V~~l~~spd~~~l~s~s~-d~~i~iwd~~ 263 (609)
...... +. .+.. .....=..+.|+|+++++..... +++|.++++.
T Consensus 173 ~~~~~~~l~~~~~~~~--~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 173 IDDDTGKLTPVDSIKV--PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp E-TTS-TEEEEEEEEC--STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EeCCCceEEEeecccc--ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence 765441 21 1111 22344678999999988766653 5677777654
No 246
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=7e-09 Score=95.02 Aligned_cols=236 Identities=17% Similarity=0.209 Sum_probs=145.6
Q ss_pred EEeecCCCCeE-EEeCCCEEEEEeCCCCccccccc-cCCCCcEEEEECCCCC-EEEEEeCCCcEEEEcCCCCceeeE---
Q 007283 21 LISGHPKSNSI-LYTNGRSVIILDLSNPLQVSIYG-EHAYPATVARFSPNGE-WIASADVSGTVRIWGAHNDHVLKK--- 94 (609)
Q Consensus 21 ~~~~~~~~~~l-~~~~~~~~~i~~~~~~~~~~~~~-~h~~~v~~~~~sp~g~-~las~~~d~~i~vWd~~~~~~~~~--- 94 (609)
-++.|+-=..+ +..++..|++|+-+.. ....+. ....+|+|++|-|.+. -||.|.. +-|.||......-..+
T Consensus 103 ~~aWhqH~~~fava~nddvVriy~ksst-~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~ 180 (445)
T KOG2139|consen 103 GVAWHQHIIAFAVATNDDVVRIYDKSST-CPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIR 180 (445)
T ss_pred eEeechhhhhhhhhccCcEEEEeccCCC-CCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccc
Confidence 46777622222 3346789999998773 333343 3346899999999764 4555554 5599997653210001
Q ss_pred --------EEeec-ccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEec
Q 007283 95 --------EFRVL-SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCG 165 (609)
Q Consensus 95 --------~~~~~-~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~ 165 (609)
.++.. ..+|+.++|.+||..|++.+-+. .-+.+|+.+.+........-.+.+.-+.|+||+.. +..+.
T Consensus 181 ~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gs--ssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~-lfaAt 257 (445)
T KOG2139|consen 181 MMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGS--SSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDV-LFAAT 257 (445)
T ss_pred cccccchhheeCCCCceeeEEEEcCCCCEEeecccCc--ceEEEEcCCCCCcccccccCCCceeeEEEcCCCCE-EEEec
Confidence 11111 24799999999999999876543 34667777777655444344567888999999997 44567
Q ss_pred CCCeEEEE-eCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeC----CCCccc-----------cccCc-
Q 007283 166 EDFLVNFY-EGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDG----KTADKI-----------GELSP- 228 (609)
Q Consensus 166 ~d~~i~~~-~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~----~~~~~~-----------~~~~~- 228 (609)
-|...++| ....+...+-.-+. +.|....|+|+|++|+.+... .-++|.. +..... ..+..
T Consensus 258 ~davfrlw~e~q~wt~erw~lgs-grvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ 335 (445)
T KOG2139|consen 258 CDAVFRLWQENQSWTKERWILGS-GRVQTACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEV 335 (445)
T ss_pred ccceeeeehhcccceecceeccC-CceeeeeecCCCCEEEEEEcC-CceEEEEeecCCCccccCcccceeeeeeccchhh
Confidence 78889999 44444433332232 378999999999977655432 2233321 111110 00100
Q ss_pred --CCC---CccceEEEEECCCCCeEEEEeCCC--------cEEEeecc
Q 007283 229 --EDG---HKGSVYAVSWSPDGKQVLTASADK--------SAKVWDIS 263 (609)
Q Consensus 229 --~~~---h~~~V~~l~~spd~~~l~s~s~d~--------~i~iwd~~ 263 (609)
..+ -.+.+.+++|.|.|.+|++.=..+ .|.+||.+
T Consensus 336 ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr 383 (445)
T KOG2139|consen 336 TICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTR 383 (445)
T ss_pred hhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhccc
Confidence 011 246789999999999999875432 35566654
No 247
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.27 E-value=2.4e-08 Score=95.69 Aligned_cols=111 Identities=16% Similarity=0.246 Sum_probs=81.6
Q ss_pred CCceeEEEEcCCCCEEEEE--eCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCC---CeEEEEEcc
Q 007283 447 RFPVTASAIAPDGSEAIIG--SQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVN---REAIVWDRV 521 (609)
Q Consensus 447 ~~~~~~~~~sp~g~~l~~g--s~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d---~~v~iwd~~ 521 (609)
..+|...++.|.+..+++. -.+..+-+++++++ + ......+.=+.+.|||.+++++.++.| +.+-+||..
T Consensus 274 ~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l----~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~ 348 (561)
T COG5354 274 KDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-L----RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPA 348 (561)
T ss_pred cccceeeeecccCCceeEEecccccceeecccccc-e----EEecCCcccccccccCcccEEEEecCCccccceEEeccC
Confidence 4678888999988876554 46788999998765 2 233345556778899999999998765 568999987
Q ss_pred CCceEEeeecCCCCceEEEEECCCCcEEEEEe------CCCeEEEEEcC
Q 007283 522 SREVKLKNMLYHTARINCLAWSPNNSMVATGS------LDTCVIIYEID 564 (609)
Q Consensus 522 ~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s------~D~~v~vw~~~ 564 (609)
++......+.+. ...-+.||||++++-++. .|..|++||+.
T Consensus 349 ~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 349 GRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred CceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence 765544334333 344579999999987764 57889999985
No 248
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.27 E-value=1.1e-07 Score=99.15 Aligned_cols=182 Identities=25% Similarity=0.285 Sum_probs=138.9
Q ss_pred eEEEeCCCEEEEEeCCCCccccccc-cCCCC---cEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeE
Q 007283 30 SILYTNGRSVIILDLSNPLQVSIYG-EHAYP---ATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDD 105 (609)
Q Consensus 30 ~l~~~~~~~~~i~~~~~~~~~~~~~-~h~~~---v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~ 105 (609)
..+....+.+.|+|........... ..+-. .--+.++++-=++++|+.-+.|.+|+......- ..+.+|.+.|..
T Consensus 102 i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p-~~l~GHeG~iF~ 180 (967)
T KOG0974|consen 102 IALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP-IRLKGHEGSIFS 180 (967)
T ss_pred EEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc-ceecccCCceEE
Confidence 3344556788899887766544332 22211 222346888889999999999999998743321 247799999999
Q ss_pred EEECCCCCEEEEEECCCCcceEEEEEcCCCCeeE-EEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeec
Q 007283 106 LQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVG-EFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSH 184 (609)
Q Consensus 106 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~ 184 (609)
+.||-||.++++++|+. .+|+|..++.+.+. ..-+|+.+|+.+.|+|. .++|++.|.+.++|+..-.... .+
T Consensus 181 i~~s~dg~~i~s~SdDR---siRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~~~~l~-~y 253 (967)
T KOG0974|consen 181 IVTSLDGRYIASVSDDR---SIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVNGTQLE-VY 253 (967)
T ss_pred EEEccCCcEEEEEecCc---ceeeeecccccccCcccccccceeEEEEeccc---eeEEeccceEEEEEecccceeh-hh
Confidence 99999999999999877 46888888766554 55689999999999998 5999999999999954332232 66
Q ss_pred cCcc-cceEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 007283 185 RGHS-NFVNCVRFSPDGSKFISVSSDKKGIIYDGKT 219 (609)
Q Consensus 185 ~~h~-~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~ 219 (609)
.+|. +.+..++..++...++|++.|+.+++|+...
T Consensus 254 ~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 254 DEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred hhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 6665 4688999999988999999999999998543
No 249
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=3.3e-09 Score=102.81 Aligned_cols=279 Identities=16% Similarity=0.219 Sum_probs=181.5
Q ss_pred cCceeEEeecCCCCeEEEeC--CCEEEEEeCCCCccccccccC--CCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCce
Q 007283 16 RGRGILISGHPKSNSILYTN--GRSVIILDLSNPLQVSIYGEH--AYPATVARFSPNGEWIASADVSGTVRIWGAHNDHV 91 (609)
Q Consensus 16 ~~~~~~~~~~~~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~h--~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~ 91 (609)
-...+.|..+|||+++..++ -..|.+||+.+.... |.-| .+.|....++.|=..++--..|.+|.+=.- .+.
T Consensus 51 p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~G~- 126 (703)
T KOG2321|consen 51 PTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-YGR- 126 (703)
T ss_pred ccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCceeeehhh-cCe-
Confidence 34445789999999986654 378999999875442 5555 356777777877777777777888865432 111
Q ss_pred eeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEE
Q 007283 92 LKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVN 171 (609)
Q Consensus 92 ~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~ 171 (609)
....+ ....-..++++.-.--|+.+|.+.+ +.-..++.|.-+..|......+++|...|-.. .|++|+.++.+.
T Consensus 127 -hy~~R-IP~~GRDm~y~~~scDly~~gsg~e---vYRlNLEqGrfL~P~~~~~~~lN~v~in~~hg-Lla~Gt~~g~VE 200 (703)
T KOG2321|consen 127 -HYRTR-IPKFGRDMKYHKPSCDLYLVGSGSE---VYRLNLEQGRFLNPFETDSGELNVVSINEEHG-LLACGTEDGVVE 200 (703)
T ss_pred -eeeee-cCcCCccccccCCCccEEEeecCcc---eEEEEccccccccccccccccceeeeecCccc-eEEecccCceEE
Confidence 11111 1222345555543223344444433 22335566766667777788999999999887 488899999999
Q ss_pred EEeCCCCceeeec------cCcc-----cceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEE
Q 007283 172 FYEGPPFKFKLSH------RGHS-----NFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVS 240 (609)
Q Consensus 172 ~~~~~~~~~~~~~------~~h~-----~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~ 240 (609)
+||.........+ ..|. ..|+++.|+.+|-.+++|+.+|.++|||+++.+.+..-. .+..-+|..+.
T Consensus 201 fwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd--h~~e~pi~~l~ 278 (703)
T KOG2321|consen 201 FWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD--HGYELPIKKLD 278 (703)
T ss_pred EecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc--cCCccceeeec
Confidence 9997654333221 2232 359999999999999999999999999999887664331 13345788999
Q ss_pred ECCC--CCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCC
Q 007283 241 WSPD--GKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLE 314 (609)
Q Consensus 241 ~spd--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~ 314 (609)
|-+. +..++|. ....++|||-.. ++....+.+.. .+.+ ++...+..+++++..+..+..|.+....
T Consensus 279 ~~~~~~q~~v~S~-Dk~~~kiWd~~~---Gk~~asiEpt~--~lND--~C~~p~sGm~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 279 WQDTDQQNKVVSM-DKRILKIWDECT---GKPMASIEPTS--DLND--FCFVPGSGMFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred ccccCCCceEEec-chHHhhhccccc---CCceeeccccC--CcCc--eeeecCCceEEEecCCCcceeEEccccC
Confidence 9775 3445544 346789999763 44433332221 1222 3334456788888888888888776554
No 250
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=1.7e-09 Score=98.99 Aligned_cols=218 Identities=13% Similarity=0.223 Sum_probs=130.7
Q ss_pred eeEEeecCCCCeEEEe--CCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEE
Q 007283 19 GILISGHPKSNSILYT--NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEF 96 (609)
Q Consensus 19 ~~~~~~~~~~~~l~~~--~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~ 96 (609)
+..+...+||..++.. .+..+.|||..++.-......--+.++-+.|||||.+|..+.-|++.+||........ ...
T Consensus 198 Vtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~-erw 276 (445)
T KOG2139|consen 198 VTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTK-ERW 276 (445)
T ss_pred eeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhccccee-cce
Confidence 3467889999888765 4579999999887654433223467999999999999999999999999965433211 123
Q ss_pred eecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCC
Q 007283 97 RVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGP 176 (609)
Q Consensus 97 ~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~ 176 (609)
...++.|...+|+|+|.+|+.+..+.. .++++.|........-.++.....-+-|..
T Consensus 277 ~lgsgrvqtacWspcGsfLLf~~sgsp-----------------------~lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 277 ILGSGRVQTACWSPCGSFLLFACSGSP-----------------------RLYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred eccCCceeeeeecCCCCEEEEEEcCCc-----------------------eEEEEeecCCCccccCcccceeeeeeccch
Confidence 345669999999999999887654432 344555543332111122222222333322
Q ss_pred CCceeeeccCcccceEEEEEcCCCCEEEEEeCCCc--------EEEEeCCCCccccccC--cC-CCCccceEEEEECC--
Q 007283 177 PFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKK--------GIIYDGKTADKIGELS--PE-DGHKGSVYAVSWSP-- 243 (609)
Q Consensus 177 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~--------i~iwd~~~~~~~~~~~--~~-~~h~~~V~~l~~sp-- 243 (609)
.......-.--.+.+.+++|.|.|.+||+.-..+. |.+||.+..-...... .. ..| =..++|+|
T Consensus 334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~---P~~IsF~pl~ 410 (445)
T KOG2139|consen 334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEY---PAYISFGPLK 410 (445)
T ss_pred hhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCC---CceEEeeecc
Confidence 11110011112356889999999999998754433 4456544322111110 00 012 23455665
Q ss_pred -CCCeEEEEeCCCcEEEeecc
Q 007283 244 -DGKQVLTASADKSAKVWDIS 263 (609)
Q Consensus 244 -d~~~l~s~s~d~~i~iwd~~ 263 (609)
++.+|..+-..|.+.-|++.
T Consensus 411 n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 411 NEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred cCCcEEEEEeccCceEeeeeE
Confidence 56677777677888777653
No 251
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.23 E-value=6.1e-06 Score=90.87 Aligned_cols=320 Identities=14% Similarity=0.170 Sum_probs=175.8
Q ss_pred CccCcCceeEEeecCCCCeEEEe-CCCEEEEE----eCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEE--
Q 007283 12 PSTERGRGILISGHPKSNSILYT-NGRSVIIL----DLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIW-- 84 (609)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~i~----~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vW-- 84 (609)
|....+....+..-++.+.|+.. .++.|++. +..+... -.-+.=...|.+++||||+.+||-+..++++.+=
T Consensus 71 ~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~ 149 (928)
T PF04762_consen 71 PDDPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR 149 (928)
T ss_pred CcCCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec
Confidence 44556677788888887655443 34556666 4333222 1223335679999999999999988778776443
Q ss_pred --cCCC---------C--ce-------eeEEEeec------------------------ccceeEEEECCCCCEEEEEEC
Q 007283 85 --GAHN---------D--HV-------LKKEFRVL------------------------SGRIDDLQWSPDGLRIVACGD 120 (609)
Q Consensus 85 --d~~~---------~--~~-------~~~~~~~~------------------------~~~v~~~~~spdg~~l~~~~~ 120 (609)
|.-. + +. ..++|++. ...-..++|..||+++++..-
T Consensus 150 ~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~ 229 (928)
T PF04762_consen 150 DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSV 229 (928)
T ss_pred cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEE
Confidence 2211 0 00 00122111 112356889999999887663
Q ss_pred --CCC-cceEEEEEcCCCCeeEEEecC-CccEEEEEEeeCCCeEEEEecC---CCeEEEEeC---CCCceeeeccCcccc
Q 007283 121 --GKG-KSLVRAFMWDSGTNVGEFDGH-SRRVLSCAFKPSRPFRIATCGE---DFLVNFYEG---PPFKFKLSHRGHSNF 190 (609)
Q Consensus 121 --~~~-~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~i~t~~~---d~~i~~~~~---~~~~~~~~~~~h~~~ 190 (609)
..+ ...+ ..|+....+...... .+--..++|.|.|.. ||+.-. ...|.+|+- +-++....+......
T Consensus 230 ~~~~~~~R~i--RVy~ReG~L~stSE~v~gLe~~l~WrPsG~l-IA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~ 306 (928)
T PF04762_consen 230 EPETGSRRVI--RVYSREGELQSTSEPVDGLEGALSWRPSGNL-IASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEK 306 (928)
T ss_pred EcCCCceeEE--EEECCCceEEeccccCCCccCCccCCCCCCE-EEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCce
Confidence 222 3344 455554333322221 112236799999985 665533 355667762 223333333345667
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCC-eEEEEeCCCcEEEeecccCCCCc
Q 007283 191 VNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGK-QVLTASADKSAKVWDISEDNHGK 269 (609)
Q Consensus 191 v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~-~l~s~s~d~~i~iwd~~~~~~~~ 269 (609)
|..+.|++|+..||....|. |.+|-..+.+--............+..+.|+|... .|...+.++.+..++..-
T Consensus 307 v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~----- 380 (928)
T PF04762_consen 307 VIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAW----- 380 (928)
T ss_pred eeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEE-----
Confidence 99999999999999877665 99997655442111111112233455699999654 466666667777665431
Q ss_pred eEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCce----eeeCCCCCeEEEEEecCCCCEEEEEec
Q 007283 270 LKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPL----QLSGHMKNVTALTVLNIDPKVILSSSY 345 (609)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~----~~~~h~~~v~~~~~~~~~~~~~~t~s~ 345 (609)
.-... ..... ++.-.+.+-.+.++.+-.+....-++. .+. -...|..++|.... ..++.-..
T Consensus 381 -~v~~s-~~~~~----------~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~-~~~avl~~ 446 (928)
T PF04762_consen 381 -DVSRS-PGSSP----------NDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSN-SRFAVLTS 446 (928)
T ss_pred -EEEec-CCCCc----------cCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCC-CeEEEEEC
Confidence 00000 00000 011112222233344444433322221 222 34678899987543 34888889
Q ss_pred CCcEEEEecC
Q 007283 346 DGLIVKWIQG 355 (609)
Q Consensus 346 dg~i~~W~~~ 355 (609)
||++.+|...
T Consensus 447 d~~l~~~~~~ 456 (928)
T PF04762_consen 447 DGSLSIYEWD 456 (928)
T ss_pred CCCEEEEEec
Confidence 9999998643
No 252
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.22 E-value=3.5e-11 Score=113.25 Aligned_cols=228 Identities=14% Similarity=0.142 Sum_probs=174.5
Q ss_pred eeEEeecCCCCeEEEeCC-CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEe
Q 007283 19 GILISGHPKSNSILYTNG-RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFR 97 (609)
Q Consensus 19 ~~~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~ 97 (609)
|+.+..+.+|.+|+..+. +-+..+|..+.+....+.- ...|..++|-.+-+++|.++. .-+.|||-..-+ + +-+.
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQK-~y~yvYD~~GtE-l-HClk 207 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQK-KYVYVYDNNGTE-L-HCLK 207 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhhh-ceEEEecCCCcE-E-eehh
Confidence 568888889999887753 5677788888777655543 456899999999999999965 568888864332 1 1122
Q ss_pred ecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCC
Q 007283 98 VLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP 177 (609)
Q Consensus 98 ~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~ 177 (609)
. ..+|..+.|-|---.|+++++. ..+++.+...++.+..+..-.+.+..+.-.|-+. ++-+|...|++.+|....
T Consensus 208 ~-~~~v~rLeFLPyHfLL~~~~~~---G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP~s 282 (545)
T KOG1272|consen 208 R-HIRVARLEFLPYHFLLVAASEA---GFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA-VIHLGHSNGTVSLWSPNS 282 (545)
T ss_pred h-cCchhhhcccchhheeeecccC---CceEEEeechhhhhHHHHccCCccchhhcCCccc-eEEEcCCCceEEecCCCC
Confidence 2 2358889999987566665532 3578888889998888887788888888889876 588999999999999776
Q ss_pred CceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcE
Q 007283 178 FKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSA 257 (609)
Q Consensus 178 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i 257 (609)
.+....+..|.++|.++++.++|.++||.+.|..++|||++.-..+.++.. .-....++||..| ++..|....+
T Consensus 283 kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t----p~~a~~ls~Sqkg--lLA~~~G~~v 356 (545)
T KOG1272|consen 283 KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT----PHPASNLSLSQKG--LLALSYGDHV 356 (545)
T ss_pred cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec----CCCcccccccccc--ceeeecCCee
Confidence 666666778999999999999999999999999999999998776655431 2346678887665 4455566789
Q ss_pred EEee
Q 007283 258 KVWD 261 (609)
Q Consensus 258 ~iwd 261 (609)
.||.
T Consensus 357 ~iw~ 360 (545)
T KOG1272|consen 357 QIWK 360 (545)
T ss_pred eeeh
Confidence 9995
No 253
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.21 E-value=3e-10 Score=105.49 Aligned_cols=155 Identities=17% Similarity=0.179 Sum_probs=110.0
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEEecCCee----eeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCce
Q 007283 450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTL----TEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREV 525 (609)
Q Consensus 450 ~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~----~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~ 525 (609)
...+..+|.++++|.+..+....++++..... ........-...+..+..+........++....+.+|.... .
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~--~ 142 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS--G 142 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc--c
Confidence 34556789999999999998888888764431 11111122223334333333333333444555556665443 2
Q ss_pred EEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEcCCCeEEEEeCCCcEEEEE
Q 007283 526 KLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWR 605 (609)
Q Consensus 526 ~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~D~~i~~W~ 605 (609)
....+.+|-..++.++||||++++.|++.|..|+|=.++..- ....++.||..-|..++..++..|+|+|.|+++++|+
T Consensus 143 ~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f-~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 143 RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF-VIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWD 221 (390)
T ss_pred CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc-chhhhccccHhheeeeeeccCceeeecCCCCcEEEEe
Confidence 234567899999999999999999999999999998776422 3345677999999999999988999999999999999
Q ss_pred cc
Q 007283 606 LT 607 (609)
Q Consensus 606 ~~ 607 (609)
+.
T Consensus 222 ~~ 223 (390)
T KOG3914|consen 222 IT 223 (390)
T ss_pred cc
Confidence 85
No 254
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.20 E-value=2.3e-09 Score=109.99 Aligned_cols=187 Identities=16% Similarity=0.194 Sum_probs=120.8
Q ss_pred ceeEEeecCCCCeEEEeC----CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEE-EEeCCC--cEEEEcCCCCc
Q 007283 18 RGILISGHPKSNSILYTN----GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIA-SADVSG--TVRIWGAHNDH 90 (609)
Q Consensus 18 ~~~~~~~~~~~~~l~~~~----~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~la-s~~~d~--~i~vWd~~~~~ 90 (609)
......++|||+.|+|.. ...+++|++.+++... +..+.+.+.+++|+|||+.|+ +.+.++ .|.+|++.+++
T Consensus 191 ~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~ 269 (417)
T TIGR02800 191 PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ 269 (417)
T ss_pred ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC
Confidence 345677999999999863 2579999998876543 444566778899999999876 455444 57888887654
Q ss_pred eeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCC--
Q 007283 91 VLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDF-- 168 (609)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~-- 168 (609)
. ..+..+.......+|+|||++|+.+++..+...+..++.+.+. ...+..+...+....|+|++..++.+....+
T Consensus 270 ~--~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~-~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~ 346 (417)
T TIGR02800 270 L--TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE-VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGF 346 (417)
T ss_pred E--EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-EEEeecCCCCccCeEECCCCCEEEEEEccCCce
Confidence 2 2333444445678999999999888764433333333333333 3334445556778899999986444443322
Q ss_pred eEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCC
Q 007283 169 LVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDK 210 (609)
Q Consensus 169 ~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~ 210 (609)
.+.+++.......... .. .......|+|||+.|+.++.++
T Consensus 347 ~i~~~d~~~~~~~~l~-~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 347 NIAVMDLDGGGERVLT-DT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred EEEEEeCCCCCeEEcc-CC-CCCCCceECCCCCEEEEEEeCC
Confidence 5777776654332222 11 1234568999999888777654
No 255
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.20 E-value=4.3e-08 Score=96.80 Aligned_cols=310 Identities=19% Similarity=0.230 Sum_probs=164.3
Q ss_pred CCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCE
Q 007283 35 NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLR 114 (609)
Q Consensus 35 ~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 114 (609)
..+.+.+.|..+.+.+..+......-..+.|+|||+++..++.||.|.++|+.+.+.+. +++.- .....+++||||++
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~-~i~~G-~~~~~i~~s~DG~~ 91 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVA-TIKVG-GNPRGIAVSPDGKY 91 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEE-EEE-S-SEEEEEEE--TTTE
T ss_pred CCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEE-EEecC-CCcceEEEcCCCCE
Confidence 35899999999988887776543334557899999999999999999999999987544 34332 34678999999999
Q ss_pred EEEEECCCCcceEEEEEcCCCCeeEEEec-------CCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCc-eeeeccC
Q 007283 115 IVACGDGKGKSLVRAFMWDSGTNVGEFDG-------HSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFK-FKLSHRG 186 (609)
Q Consensus 115 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~-~~~~~~~ 186 (609)
++++....+ .+.+++-++.+.+..+.. ...++..+..+|..+..+++--.-+.+-+-|....+ .......
T Consensus 92 ~~v~n~~~~--~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~ 169 (369)
T PF02239_consen 92 VYVANYEPG--TVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK 169 (369)
T ss_dssp EEEEEEETT--EEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE
T ss_pred EEEEecCCC--ceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec
Confidence 987763332 345556556666665542 234677787788887534443333545444543322 2222323
Q ss_pred cccceEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCccccccCc-CCCCccceEEEE-------EC--CCCCeEEEEeCCC
Q 007283 187 HSNFVNCVRFSPDGSKFISV-SSDKKGIIYDGKTADKIGELSP-EDGHKGSVYAVS-------WS--PDGKQVLTASADK 255 (609)
Q Consensus 187 h~~~v~~l~~s~dg~~l~s~-~~d~~i~iwd~~~~~~~~~~~~-~~~h~~~V~~l~-------~s--pd~~~l~s~s~d~ 255 (609)
-........|+|++++++.+ -.+..+.++|.++++....+.. ...|.+.+..+- |. ..+...++.-...
T Consensus 170 ~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~ 249 (369)
T PF02239_consen 170 VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTD 249 (369)
T ss_dssp --TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--
T ss_pred ccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCC
Confidence 34567788999999987665 4566888999888776543321 112444443321 11 1223332222233
Q ss_pred cEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEE----EcCCcEEEEeCCCCCCCceeee-CCCCCeEEE
Q 007283 256 SAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIV----SLGGTISIFSANDLEKSPLQLS-GHMKNVTAL 330 (609)
Q Consensus 256 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~i~~~~~~~~~~~~~~~~-~h~~~v~~~ 330 (609)
.+.+||.. ..+..+++...+.+ ..+....+..++.+. ...+.+.+++...... ...+. +-...+..+
T Consensus 250 ~v~v~d~~---~wkvv~~I~~~G~g----lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~-~~~i~~~~~~~~~h~ 321 (369)
T PF02239_consen 250 PVSVHDDY---AWKVVKTIPTQGGG----LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKV-VKTITPGPGKRVVHM 321 (369)
T ss_dssp TTT-STTT---BTSEEEEEE-SSSS------EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEE-EE-HHHHHT--EEEE
T ss_pred ccccchhh---cCeEEEEEECCCCc----ceeecCCCCccEEeeccCCCCCceEEEEECcCcce-eEEEeccCCCcEecc
Confidence 55566654 24555555443322 122222334455554 2346788888765421 11221 111236777
Q ss_pred EEecCCCCEEEEEecCC-cEEEEecCc
Q 007283 331 TVLNIDPKVILSSSYDG-LIVKWIQGI 356 (609)
Q Consensus 331 ~~~~~~~~~~~t~s~dg-~i~~W~~~~ 356 (609)
.|........+|.-..+ .|.++|..+
T Consensus 322 ef~~dG~~v~vS~~~~~~~i~v~D~~T 348 (369)
T PF02239_consen 322 EFNPDGKEVWVSVWDGNGAIVVYDAKT 348 (369)
T ss_dssp EE-TTSSEEEEEEE--TTEEEEEETTT
T ss_pred EECCCCCEEEEEEecCCCEEEEEECCC
Confidence 77754444444444444 688887654
No 256
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=5.7e-09 Score=96.63 Aligned_cols=203 Identities=12% Similarity=0.168 Sum_probs=142.2
Q ss_pred CCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCce---eeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcC
Q 007283 57 AYPATVARFSPNGEWIASADVSGTVRIWGAHNDHV---LKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWD 133 (609)
Q Consensus 57 ~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~---~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 133 (609)
+.+|..++.. ||. |.++-.+|.+++|....+.. ....+..+ ..+..+.-+|....+++.|.-.....+.+|+..
T Consensus 105 ~~~I~gl~~~-dg~-Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle 181 (412)
T KOG3881|consen 105 TKSIKGLKLA-DGT-LITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLE 181 (412)
T ss_pred cccccchhhc-CCE-EEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecc
Confidence 3445444433 454 55667889999998873221 11122222 456777788877888887643322345555555
Q ss_pred CCCeeEEEecC-------Ccc--EEEEEEeeC-CCeEEEEecCCCeEEEEeCCCCc-eeeeccCcccceEEEEEcCCCCE
Q 007283 134 SGTNVGEFDGH-------SRR--VLSCAFKPS-RPFRIATCGEDFLVNFYEGPPFK-FKLSHRGHSNFVNCVRFSPDGSK 202 (609)
Q Consensus 134 ~~~~~~~~~~h-------~~~--v~~~~~~p~-~~~~i~t~~~d~~i~~~~~~~~~-~~~~~~~h~~~v~~l~~s~dg~~ 202 (609)
..+++.+-+.- .-+ ++++.|-|. .++.||+|..-+.+++||....+ .+..+.--..+++++...|+|++
T Consensus 182 ~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~ 261 (412)
T KOG3881|consen 182 QSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNF 261 (412)
T ss_pred cceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcE
Confidence 44433332211 112 456788665 24579999999999999977543 33344444678999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeeccc
Q 007283 203 FISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE 264 (609)
Q Consensus 203 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~ 264 (609)
+.+|..-+.+..+|.+.++.+... ..+.++.|.++..+|.+++++++|-|+.+||+|+..
T Consensus 262 Iy~gn~~g~l~~FD~r~~kl~g~~--~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 262 IYTGNTKGQLAKFDLRGGKLLGCG--LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred EEEecccchhheecccCceeeccc--cCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 999999999999999999887663 247889999999999999999999999999999863
No 257
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.18 E-value=1.1e-06 Score=83.78 Aligned_cols=117 Identities=25% Similarity=0.370 Sum_probs=93.2
Q ss_pred CCceeEEEEcCCCCEEEEEeCCC-cEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCce
Q 007283 447 RFPVTASAIAPDGSEAIIGSQDG-KLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREV 525 (609)
Q Consensus 447 ~~~~~~~~~sp~g~~l~~gs~dg-~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~ 525 (609)
+..|.-..+..+++-++.|..|| .|-|++..++.. +...+.-+.|.++..+|||++++.+....++.+.|+.++..
T Consensus 359 ~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~---kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv 435 (668)
T COG4946 359 KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV---KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV 435 (668)
T ss_pred CCceEEEEEccCCcceEEeccCCceEEEEecCCceE---EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence 34466666777778899999999 899999887653 34556678899999999999999999999999999988765
Q ss_pred EEeeecCCCCceEEEEECCCCcEEEEEeCCC----eEEEEEcCCCC
Q 007283 526 KLKNMLYHTARINCLAWSPNNSMVATGSLDT----CVIIYEIDKPA 567 (609)
Q Consensus 526 ~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~----~v~vw~~~~~~ 567 (609)
.+.. ...-+-|+..+|||+++++|-+--+| .|+++|+...+
T Consensus 436 ~~id-kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 436 RLID-KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred eEec-ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence 4321 22445699999999999999877665 68999987643
No 258
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=7.9e-09 Score=95.71 Aligned_cols=255 Identities=15% Similarity=0.202 Sum_probs=160.7
Q ss_pred ccceEEEEECCCCC--eEEEEeCCCcEEEeecccCCCCceE---EEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEE
Q 007283 233 KGSVYAVSWSPDGK--QVLTASADKSAKVWDISEDNHGKLK---KTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISI 307 (609)
Q Consensus 233 ~~~V~~l~~spd~~--~l~s~s~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~ 307 (609)
...|.+++|-.|++ .|...+.|..+..+...+....... .+.. .+.+ .+....-.+..++++..+|.+.+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~-l~~~----~I~gl~~~dg~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVS-LGTK----SIKGLKLADGTLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccc-cccc----cccchhhcCCEEEEEecCCcEEE
Confidence 34577777776554 4555556767776665432111000 0000 0111 11111123557777888899999
Q ss_pred EeCCCCC---CCceeeeCCCCCeEEEEEecCCCCEEEEEecC--CcEEEEecCccccceeccccccceeEeeeeCCcEEE
Q 007283 308 FSANDLE---KSPLQLSGHMKNVTALTVLNIDPKVILSSSYD--GLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVT 382 (609)
Q Consensus 308 ~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~d--g~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (609)
|...... .....+..+ ..+..+.-.+..+.++++|+.. ..+.+|++....
T Consensus 130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~------------------------ 184 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK------------------------ 184 (412)
T ss_pred EeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccce------------------------
Confidence 9865332 122223222 2333444445566788889988 788888764320
Q ss_pred EeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCC--CC
Q 007283 383 SGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPD--GS 460 (609)
Q Consensus 383 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~--g~ 460 (609)
.||.- .... ++.+ -+...-.++.+.|-|. ..
T Consensus 185 -----qiw~a--KNvp----------------------nD~L------------------~LrVPvW~tdi~Fl~g~~~~ 217 (412)
T KOG3881|consen 185 -----QIWSA--KNVP----------------------NDRL------------------GLRVPVWITDIRFLEGSPNY 217 (412)
T ss_pred -----eeeec--cCCC----------------------Cccc------------------cceeeeeeccceecCCCCCc
Confidence 11110 0000 0000 0000112455566666 78
Q ss_pred EEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEE
Q 007283 461 EAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCL 540 (609)
Q Consensus 461 ~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l 540 (609)
.||+++.-+.+|+||.+.+. .+...+.--+.+|+++..-|++.++.+|..-+.+..+|..++......+.+-.+.|+++
T Consensus 218 ~fat~T~~hqvR~YDt~~qR-RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsi 296 (412)
T KOG3881|consen 218 KFATITRYHQVRLYDTRHQR-RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSI 296 (412)
T ss_pred eEEEEecceeEEEecCcccC-cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceE
Confidence 89999999999999987443 23344444567999999999999999999999999999887765444467788999999
Q ss_pred EECCCCcEEEEEeCCCeEEEEEcCC
Q 007283 541 AWSPNNSMVATGSLDTCVIIYEIDK 565 (609)
Q Consensus 541 ~~s~d~~~l~s~s~D~~v~vw~~~~ 565 (609)
--+|..++||+++.|..|+|+|+.+
T Consensus 297 h~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 297 HCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred EEcCCCceEEeeccceeEEEeeccc
Confidence 9999999999999999999999976
No 259
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.11 E-value=3.2e-07 Score=88.20 Aligned_cols=236 Identities=15% Similarity=0.167 Sum_probs=143.1
Q ss_pred CcCceeEEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCC---------------C
Q 007283 15 ERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVS---------------G 79 (609)
Q Consensus 15 ~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d---------------~ 79 (609)
++........+|.|.+|++-....|.+|.......+..+. |. .|.-+.|||+|+||.+=+.. .
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~-~~-~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFR-HP-DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred cCcchhheeecCcchheehhhccceEEccccchhheeeee-cC-CceecccCcccceeeeeccCCccChhhccCCccccC
Confidence 4555668999999999998877889999987666544443 43 59999999999999984332 2
Q ss_pred cEEEEcCCCCceeeEEEeecccc--ee-EEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecC---CccEEEEEE
Q 007283 80 TVRIWGAHNDHVLKKEFRVLSGR--ID-DLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGH---SRRVLSCAF 153 (609)
Q Consensus 80 ~i~vWd~~~~~~~~~~~~~~~~~--v~-~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~~~~ 153 (609)
.+.+||..++.++ ..+...+.+ .. -+.||-|.++++=+. +.. +.+... ..++.....+ ...|...+|
T Consensus 109 ~~~vwd~~sg~iv-~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~s---l~i~e~--t~n~~~~p~~~lr~~gi~dFsi 181 (561)
T COG5354 109 NVFVWDIASGMIV-FSFNGISQPYLGWPVLKFSIDDKYVARVV-GSS---LYIHEI--TDNIEEHPFKNLRPVGILDFSI 181 (561)
T ss_pred ceeEEeccCceeE-eeccccCCcccccceeeeeecchhhhhhc-cCe---EEEEec--CCccccCchhhccccceeeEEe
Confidence 5999999987643 344444444 44 688999877665432 111 223322 1111111111 245777788
Q ss_pred eeCCC-eEEEE-----ecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEe-----------CCCcEEEEe
Q 007283 154 KPSRP-FRIAT-----CGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVS-----------SDKKGIIYD 216 (609)
Q Consensus 154 ~p~~~-~~i~t-----~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-----------~d~~i~iwd 216 (609)
+|.+. ..||. .+.+.++++|.++..+......--...=..+.|.+.|.+|+.-. ...++.|++
T Consensus 182 sP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~ 261 (561)
T COG5354 182 SPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLR 261 (561)
T ss_pred cCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEe
Confidence 88632 22332 46777888888774443322111111123577888888665421 124566676
Q ss_pred CCCCccccccCcCCCCccceEEEEECCCCCeEEEEe--CCCcEEEeecc
Q 007283 217 GKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTAS--ADKSAKVWDIS 263 (609)
Q Consensus 217 ~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s--~d~~i~iwd~~ 263 (609)
.+... + .....-.+.|...+|.|.++.++.++ ++..+.++|++
T Consensus 262 ~~e~~-i---~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr 306 (561)
T COG5354 262 ITERS-I---PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR 306 (561)
T ss_pred ecccc-c---ceeccccccceeeeecccCCceeEEecccccceeecccc
Confidence 65322 1 11114467899999999888777665 45555666654
No 260
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.10 E-value=2.2e-08 Score=91.22 Aligned_cols=248 Identities=16% Similarity=0.302 Sum_probs=154.7
Q ss_pred CCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCce----eeEEEeec------------ccceeEEEECCCCC--EEEEE
Q 007283 57 AYPATVARFSPNGEWIASADVSGTVRIWGAHNDHV----LKKEFRVL------------SGRIDDLQWSPDGL--RIVAC 118 (609)
Q Consensus 57 ~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~----~~~~~~~~------------~~~v~~~~~spdg~--~l~~~ 118 (609)
.+.|+++.|...|.+||+|+.+|.|-++.-....- ....++.| .+.|..++|-+++. .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 56799999999999999999999999996543211 22233333 34678899999864 34444
Q ss_pred ECCCCcceEEEEEcCC---CC--------------------------------eeEEE-ecCCccEEEEEEeeCCCeEEE
Q 007283 119 GDGKGKSLVRAFMWDS---GT--------------------------------NVGEF-DGHSRRVLSCAFKPSRPFRIA 162 (609)
Q Consensus 119 ~~~~~~~~~~~~~~~~---~~--------------------------------~~~~~-~~h~~~v~~~~~~p~~~~~i~ 162 (609)
+.+++ +++|.... .. +...+ +.|+..|.++++..|... +.
T Consensus 105 tNdkt---iKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et-~l 180 (433)
T KOG1354|consen 105 TNDKT---IKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET-FL 180 (433)
T ss_pred cCCcc---eeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce-Ee
Confidence 44443 34443321 11 00111 368888999999988875 44
Q ss_pred EecCCCeEEEEeCCCCceeee---ccCc-----ccceEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCcc------ccccC
Q 007283 163 TCGEDFLVNFYEGPPFKFKLS---HRGH-----SNFVNCVRFSPD-GSKFISVSSDKKGIIYDGKTADK------IGELS 227 (609)
Q Consensus 163 t~~~d~~i~~~~~~~~~~~~~---~~~h-----~~~v~~l~~s~d-g~~l~s~~~d~~i~iwd~~~~~~------~~~~~ 227 (609)
+ ..|-.|.+|..+-....+. .+.+ ...|++..|+|. .+.++-.+..|+|++.|.+.... +....
T Consensus 181 S-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEep 259 (433)
T KOG1354|consen 181 S-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEP 259 (433)
T ss_pred e-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccc
Confidence 3 4566789997542211111 2222 346889999997 55788889999999999873221 11110
Q ss_pred cC-------CCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCC-----------CCCccceEEEE
Q 007283 228 PE-------DGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSG-----------SGGVDDMLVGC 289 (609)
Q Consensus 228 ~~-------~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 289 (609)
.. .+--..|..+.|+++|+|+++-. --+|++||+.-. .+.+.+..... +..+ .-.+.|
T Consensus 260 edp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme--~~pv~t~~vh~~lr~kLc~lYEnD~I-fdKFec 335 (433)
T KOG1354|consen 260 EDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNME--AKPVETYPVHEYLRSKLCSLYENDAI-FDKFEC 335 (433)
T ss_pred cCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEecccc--CCcceEEeehHhHHHHHHHHhhccch-hheeEE
Confidence 00 01124688899999999999864 368999998421 22233322111 0001 113457
Q ss_pred EEcCC--eEEEEEcCCcEEEEeCCCC
Q 007283 290 LWQND--FLVIVSLGGTISIFSANDL 313 (609)
Q Consensus 290 ~~~~~--~~~~~~~~g~i~~~~~~~~ 313 (609)
.|+++ ..++|+-.+..++++....
T Consensus 336 ~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 336 SWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred EEcCCcceEecccccceEEEecCCCC
Confidence 77766 8888898999999985443
No 261
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.08 E-value=1.1e-08 Score=99.97 Aligned_cols=190 Identities=23% Similarity=0.379 Sum_probs=138.0
Q ss_pred CCCCCEEEEEeCCCcEEEEcCCCCceeeEEEee---cccceeEEEEC------C-------------CCCEEEEEECCCC
Q 007283 66 SPNGEWIASADVSGTVRIWGAHNDHVLKKEFRV---LSGRIDDLQWS------P-------------DGLRIVACGDGKG 123 (609)
Q Consensus 66 sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~---~~~~v~~~~~s------p-------------dg~~l~~~~~~~~ 123 (609)
.|-+.|+|....||.+|||+...++. ..+|.. .++...+..|. | .+..+++.|-+.+
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~-~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g 80 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQL-QQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG 80 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCcee-eeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc
Confidence 45678999999999999999987652 233321 23334444443 1 1223333343333
Q ss_pred cceEEEEEcCCCCeeEEE--ecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCC
Q 007283 124 KSLVRAFMWDSGTNVGEF--DGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGS 201 (609)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 201 (609)
. +.++....+..-..+ .+|.+.|.++..+.+-. .|.+++.|+.+.+|+.......+...+....+.+++.+|||.
T Consensus 81 ~--v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 81 S--VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK 157 (541)
T ss_pred c--EEEEEecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence 2 233333344443444 37888999888776554 599999999999999998888888988888999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCC-----CCeEEEE-eCCCcEEEeeccc
Q 007283 202 KFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD-----GKQVLTA-SADKSAKVWDISE 264 (609)
Q Consensus 202 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd-----~~~l~s~-s~d~~i~iwd~~~ 264 (609)
.|++|+ +.|.+||.++++.+..+ .||.+.|.++.|..+ |.+++++ ..+.-+.+|-+..
T Consensus 158 ~l~~as--~~ik~~~~~~kevv~~f---tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 158 ILLTAS--RQIKVLDIETKEVVITF---TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEecc--ceEEEEEccCceEEEEe---cCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 998876 67999999999998887 499999999999877 6665554 5567788897754
No 262
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=8.9e-08 Score=96.43 Aligned_cols=203 Identities=10% Similarity=0.036 Sum_probs=122.1
Q ss_pred EEEEEeCCCCccccccccCCCCcEEEEECCCCCE-EEEEeCC---CcEEEEcCCCCceeeEEEeecccceeEEEECCCCC
Q 007283 38 SVIILDLSNPLQVSIYGEHAYPATVARFSPNGEW-IASADVS---GTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGL 113 (609)
Q Consensus 38 ~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~-las~~~d---~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~ 113 (609)
.+.+-|...........+ . .....+|||||+. ++..+.+ ..|.++|+.+++. +.+....+......|||||+
T Consensus 170 ~l~~~d~dg~~~~~~~~~-~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 170 NIVLADYTLTYQKVIVKG-G-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIASSQGMLVVSDVSKDGS 245 (419)
T ss_pred eEEEECCCCCceeEEccC-C-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE--EEEecCCCcEEeeEECCCCC
Confidence 666655543333222332 3 6788999999985 6644433 4577778777653 23444556677789999999
Q ss_pred EEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCC--eEEEEeCCCCceeeec-cCcccc
Q 007283 114 RIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDF--LVNFYEGPPFKFKLSH-RGHSNF 190 (609)
Q Consensus 114 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~--~i~~~~~~~~~~~~~~-~~h~~~ 190 (609)
+|+...+..+...+.+++.+.+. ...+..+........|+|||..++.+....+ .|...+...++..+.. .+..
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~-- 322 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN-- 322 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--
Confidence 88876654433333333433443 3334434333345689999987655554444 4555576666553332 2221
Q ss_pred eEEEEEcCCCCEEEEEeCC---------CcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCC
Q 007283 191 VNCVRFSPDGSKFISVSSD---------KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASAD 254 (609)
Q Consensus 191 v~~l~~s~dg~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d 254 (609)
...|+|||+.|+..+.. ..+.+.|..+++. ..+.. + +......|+|||++++..+.+
T Consensus 323 --~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~--~--~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 323 --NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTA--N--GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred --CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCC--C--CCcCCeEECCCCCEEEEEEcc
Confidence 23899999988877653 2577778776653 33332 1 223468999999987766543
No 263
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=3.2e-07 Score=89.00 Aligned_cols=310 Identities=18% Similarity=0.282 Sum_probs=165.4
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCC-----------CcEEEe
Q 007283 192 NCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASAD-----------KSAKVW 260 (609)
Q Consensus 192 ~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d-----------~~i~iw 260 (609)
+-+.|||.|.+|+|--.- -|.+|-......+..+ .|.+ |.-+.|||..+||+|=|.. ..++||
T Consensus 214 tyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF----~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRF----YHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred eeEEecCCceEEEEEecc-ceeeecCccHHHHHhc----cCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEE
Confidence 568999999999887554 4889987777777776 3664 8999999999999987642 578999
Q ss_pred ecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeC---CCCCeEEEEEecCCC
Q 007283 261 DISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSG---HMKNVTALTVLNIDP 337 (609)
Q Consensus 261 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~ 337 (609)
|+. +|.+++.+.........-.++...+++++++.... +.|.+|...... .+.+ ....|....|++.
T Consensus 288 DI~---tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~----lld~Kslki~gIr~FswsP~-- 357 (698)
T KOG2314|consen 288 DIA---TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFM----LLDKKSLKISGIRDFSWSPT-- 357 (698)
T ss_pred Ecc---ccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCcee----eecccccCCccccCcccCCC--
Confidence 998 45555555432211111122222333455555443 678888654311 1111 1223444444432
Q ss_pred CEEEEEecCCcEEEEecCccccceeccccccceeEeeee-CCcEEEEeccceEEEEeccCCccccccccccCCCCceeEe
Q 007283 338 KVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAI-EEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSV 416 (609)
Q Consensus 338 ~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (609)
+..+..|-......- ..+..+... .+.+.+.. ++ ...++.+
T Consensus 358 --------~~llAYwtpe~~~~p-------arvtL~evPs~~~iRt~n------lf-----------------nVsDckL 399 (698)
T KOG2314|consen 358 --------SNLLAYWTPETNNIP-------ARVTLMEVPSKREIRTKN------LF-----------------NVSDCKL 399 (698)
T ss_pred --------cceEEEEcccccCCc-------ceEEEEecCccceeeecc------ce-----------------eeeccEE
Confidence 334556643321100 011111111 11111100 00 0001111
Q ss_pred ecc-CCcEEEEEe-----------cccEEEee---CCeeeEEeccCCceeEEEEcCCCCEEEEEeCC---CcEEEEEecC
Q 007283 417 ALH-YPELVLVST-----------DSGVVLLR---GAEVVSTINLRFPVTASAIAPDGSEAIIGSQD---GKLRVYSIRG 478 (609)
Q Consensus 417 ~~~-~~~~~~~~~-----------~~~~~~~~---~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~d---g~i~iw~~~~ 478 (609)
... .++.++.-. ..+..+.+ ..-.+..+.++.++-+.++-|.|..+++-+.. .++.+|.+..
T Consensus 400 hWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~ 479 (698)
T KOG2314|consen 400 HWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET 479 (698)
T ss_pred EeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence 100 011111111 11111211 11223445566778889999999887665433 5789998864
Q ss_pred CeeeeeEEEecCCCceEEEEECCCCCEEEEEe---CCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCC
Q 007283 479 DTLTEEAVLEKHRGAVSVIRYSPDVSMFASGD---VNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLD 555 (609)
Q Consensus 479 ~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s---~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D 555 (609)
.......+..--....+.|.|||.|++++.+. ..+.+.++|......+......| ...+.+.|.|.|+|++|++.-
T Consensus 480 ~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 480 NIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred CCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeeh
Confidence 22111111111124568899999999998764 56888999865322211111112 346789999999999998754
Q ss_pred C
Q 007283 556 T 556 (609)
Q Consensus 556 ~ 556 (609)
.
T Consensus 559 w 559 (698)
T KOG2314|consen 559 W 559 (698)
T ss_pred h
Confidence 3
No 264
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=7.1e-07 Score=86.98 Aligned_cols=309 Identities=15% Similarity=0.161 Sum_probs=177.2
Q ss_pred eEEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEE-----EeCC-----CcEEEEcCCCC
Q 007283 20 ILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIAS-----ADVS-----GTVRIWGAHND 89 (609)
Q Consensus 20 ~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las-----~~~d-----~~i~vWd~~~~ 89 (609)
+....+++|+.++|.++..+.|++......+..... . .+..+-|||.|+||.+ ...+ ..+++|++++
T Consensus 38 ~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~-~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet- 114 (566)
T KOG2315|consen 38 NVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVEL-K-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVET- 114 (566)
T ss_pred eeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEecc-c-eeeeeeecccccccccccccccccCCCCCCCceeeeeecc-
Confidence 466788889999999999999999988754332322 2 7999999999999986 2223 3478999998
Q ss_pred ceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCC-CeEEEE-----
Q 007283 90 HVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSR-PFRIAT----- 163 (609)
Q Consensus 90 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~i~t----- 163 (609)
.+....+..-...-..++|++|....+-...+ -+.+++..... ...-+-|...|..+.++|.. +..+|+
T Consensus 115 ~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~n----ev~f~~~~~f~-~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~ 189 (566)
T KOG2315|consen 115 GVQRSQIQKKMQNGWVPQFSIDESLAARLVSN----EVQFYDLGSFK-TIQHKLSVSGITMLSLSPGPEPPFVAVYVPEK 189 (566)
T ss_pred ceehhheehhhhcCcccccccchhhhhhhhcc----eEEEEecCCcc-ceeeeeeccceeeEEecCCCCCceEEEEccCC
Confidence 43333333322333588999986432211111 13344433311 11223456788999999983 333443
Q ss_pred ecCCCeEEEEeCCCCce-----eeeccCcccceEEEEEcCCCC-EEEEEeC--CC---------cEEEEeCCCCcccccc
Q 007283 164 CGEDFLVNFYEGPPFKF-----KLSHRGHSNFVNCVRFSPDGS-KFISVSS--DK---------KGIIYDGKTADKIGEL 226 (609)
Q Consensus 164 ~~~d~~i~~~~~~~~~~-----~~~~~~h~~~v~~l~~s~dg~-~l~s~~~--d~---------~i~iwd~~~~~~~~~~ 226 (609)
+|.-..+++|..+.... .+.|. ..+. -.+.|++-|. +|+.++. |+ ++.+.+.+..++...+
T Consensus 190 kGaPa~vri~~~~~~~~~~~~a~ksFF-kadk-vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L 267 (566)
T KOG2315|consen 190 KGAPASVRIYKYPEEGQHQPVANKSFF-KADK-VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL 267 (566)
T ss_pred CCCCcEEEEeccccccccchhhhcccc-ccce-eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec
Confidence 35556788887542111 11111 1112 2467887776 3333332 33 4555555533333333
Q ss_pred CcCCCCccceEEEEECCCCCeEEEEe--CCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcC--
Q 007283 227 SPEDGHKGSVYAVSWSPDGKQVLTAS--ADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLG-- 302 (609)
Q Consensus 227 ~~~~~h~~~V~~l~~spd~~~l~s~s--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 302 (609)
.-.++|.++.|+|+++-++.+- +-..+.|+|++ +..+-.+... . ...+.....+.+++.++.+
T Consensus 268 ----~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr----~~~v~df~eg-p----RN~~~fnp~g~ii~lAGFGNL 334 (566)
T KOG2315|consen 268 ----LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR----GKPVFDFPEG-P----RNTAFFNPHGNIILLAGFGNL 334 (566)
T ss_pred ----CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC----CCEeEeCCCC-C----ccceEECCCCCEEEEeecCCC
Confidence 2368999999999998766553 34678899986 3333332211 0 0111122235577776665
Q ss_pred -CcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEec------CCcEEEEecC
Q 007283 303 -GTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSY------DGLIVKWIQG 355 (609)
Q Consensus 303 -g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~------dg~i~~W~~~ 355 (609)
|.+.+|+.... +....+ ....-+-..|+ +++.+++|++. |+.+++|+..
T Consensus 335 ~G~mEvwDv~n~-K~i~~~--~a~~tt~~eW~-PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 335 PGDMEVWDVPNR-KLIAKF--KAANTTVFEWS-PDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred CCceEEEeccch-hhcccc--ccCCceEEEEc-CCCcEEEEEeccccEEecCCeEEEEec
Confidence 78999987542 111111 11222334554 45677777764 6788899653
No 265
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.01 E-value=8e-08 Score=96.76 Aligned_cols=183 Identities=15% Similarity=0.175 Sum_probs=114.5
Q ss_pred ceeEEeecCCCCe-EEEe--C--CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEE-EEeCCCc--EEEEcCCCC
Q 007283 18 RGILISGHPKSNS-ILYT--N--GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIA-SADVSGT--VRIWGAHND 89 (609)
Q Consensus 18 ~~~~~~~~~~~~~-l~~~--~--~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~la-s~~~d~~--i~vWd~~~~ 89 (609)
..+.-.++|||+. ++|. . ...++++|+.+++..... ...+.....+|||||+.|+ +.+.++. |.++++.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 3456789999985 6653 2 257999999887765433 3456677889999998776 4444544 555566555
Q ss_pred ceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeE-EEecCCccEEEEEEeeCCCeEEEEecCC-
Q 007283 90 HVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVG-EFDGHSRRVLSCAFKPSRPFRIATCGED- 167 (609)
Q Consensus 90 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~p~~~~~i~t~~~d- 167 (609)
+. ..++..........|+|||++|+.+.+..+...+...+.+.+.... .+.+.. ...|+|+|..++.+....
T Consensus 268 ~~--~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~----~~~~SPDG~~Ia~~~~~~~ 341 (419)
T PRK04043 268 TL--TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN----NSSVSTYKNYIVYSSRETN 341 (419)
T ss_pred cE--EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc----CceECCCCCEEEEEEcCCC
Confidence 42 2344333334566899999999999876555455555555554322 222221 238999999766665443
Q ss_pred -------CeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCC
Q 007283 168 -------FLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSD 209 (609)
Q Consensus 168 -------~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d 209 (609)
..+.+.+.+.+.......+ .......|+|||+.|+..+.+
T Consensus 342 ~~~~~~~~~I~v~d~~~g~~~~LT~~--~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 342 NEFGKNTFNLYLISTNSDYIRRLTAN--GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred cccCCCCcEEEEEECCCCCeEECCCC--CCcCCeEECCCCCEEEEEEcc
Confidence 2456667665544322222 123357899999988776643
No 266
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.01 E-value=4.1e-09 Score=105.02 Aligned_cols=288 Identities=19% Similarity=0.242 Sum_probs=174.1
Q ss_pred CCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEe-ecccceeEEEECCCC---CEEEEEECCCCcceEEEEEc
Q 007283 57 AYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFR-VLSGRIDDLQWSPDG---LRIVACGDGKGKSLVRAFMW 132 (609)
Q Consensus 57 ~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~-~~~~~v~~~~~spdg---~~l~~~~~~~~~~~~~~~~~ 132 (609)
.+.+..+.++|.|+-||.++.-| +.+-|++..-.-.+.++ ...-.|....|||.. ..+|....-+ ...|
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qk------aiiw 96 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQK------AIIW 96 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcch------hhhh
Confidence 45688889999999999998766 44556654321112222 123357788898853 2444433222 2344
Q ss_pred CC--C-Ce--eEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCce-eeeccCcccceEEEEEcCCCCEEEEE
Q 007283 133 DS--G-TN--VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKF-KLSHRGHSNFVNCVRFSPDGSKFISV 206 (609)
Q Consensus 133 ~~--~-~~--~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~-~~~~~~h~~~v~~l~~s~dg~~l~s~ 206 (609)
.. . .. -..+-+|+..|+.+.|+|+.+.++++|+.|..+..||...... ...+..-....+.|+|+-....++..
T Consensus 97 nlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas 176 (1081)
T KOG0309|consen 97 NLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS 176 (1081)
T ss_pred hhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh
Confidence 42 1 11 2345699999999999999999999999999999999765432 33333334456778888654445556
Q ss_pred eCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCC-CCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCC----
Q 007283 207 SSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD-GKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGG---- 281 (609)
Q Consensus 207 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---- 281 (609)
+....+++||.+.+...... .++|...|+.+.|..- -..+.+.+.|++|++||.+.. ........+-...-+
T Consensus 177 shg~~i~vwd~r~gs~pl~s--~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS-t~e~~~~vtt~~piw~~r~ 253 (1081)
T KOG0309|consen 177 SHGNDIFVWDLRKGSTPLCS--LKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS-TTESKRTVTTNFPIWRGRY 253 (1081)
T ss_pred ccCCceEEEeccCCCcceEE--ecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc-ccccceeccccCcceeccc
Confidence 77889999998876643221 2478889999988642 235788999999999998642 111111111110000
Q ss_pred --ccceEEEEEEc-C-CeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEe---------cCCCCEEEEEecCCc
Q 007283 282 --VDDMLVGCLWQ-N-DFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVL---------NIDPKVILSSSYDGL 348 (609)
Q Consensus 282 --~~~~~~~~~~~-~-~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~---------~~~~~~~~t~s~dg~ 348 (609)
+-+.. ...+. + .++.....++....|+..+...+.+.+.||...|....|- +...-+++|-|.|.+
T Consensus 254 ~Pfg~g~-~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~ 332 (1081)
T KOG0309|consen 254 LPFGEGY-CIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQT 332 (1081)
T ss_pred cccCcee-EeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCc
Confidence 00000 00000 1 1111112222233344445556678899999877544332 112247999999999
Q ss_pred EEEEecC
Q 007283 349 IVKWIQG 355 (609)
Q Consensus 349 i~~W~~~ 355 (609)
+|+|-.+
T Consensus 333 lrlWpI~ 339 (1081)
T KOG0309|consen 333 LRLWPID 339 (1081)
T ss_pred eEeeecc
Confidence 9999544
No 267
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.99 E-value=6.8e-08 Score=86.28 Aligned_cols=121 Identities=20% Similarity=0.233 Sum_probs=91.4
Q ss_pred EEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCC-CCceeee-ccCcccceEEEEEcCC-CCEEEEEeCCCcEEEE
Q 007283 139 GEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGP-PFKFKLS-HRGHSNFVNCVRFSPD-GSKFISVSSDKKGIIY 215 (609)
Q Consensus 139 ~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~-~~~~~~~-~~~h~~~v~~l~~s~d-g~~l~s~~~d~~i~iw 215 (609)
+.++.|.-+.+.+.|+...+.++.+||.|+.+..||.+ |.+++.. .+-|...|.++.-+|. +..|+||+.|-.|++|
T Consensus 159 q~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~ 238 (339)
T KOG0280|consen 159 QTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVL 238 (339)
T ss_pred ccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeee
Confidence 35788999999999998888889999999999999988 5555444 4568888999988865 6699999999999999
Q ss_pred eCCC-CccccccCcCCCCccceEEEEECCCCC-eEEEEeCCCcEEEeecc
Q 007283 216 DGKT-ADKIGELSPEDGHKGSVYAVSWSPDGK-QVLTASADKSAKVWDIS 263 (609)
Q Consensus 216 d~~~-~~~~~~~~~~~~h~~~V~~l~~spd~~-~l~s~s~d~~i~iwd~~ 263 (609)
|.+. ++.+..- .-.+.|..+..+|.-. .++.++.-+-.++-+.+
T Consensus 239 DtRnm~kPl~~~----~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~ 284 (339)
T KOG0280|consen 239 DTRNMGKPLFKA----KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSS 284 (339)
T ss_pred ehhcccCccccC----ccccceEEEEecchhhhHHHHHHHhcCceEEEec
Confidence 9873 4444332 2347899999999543 33344444456666654
No 268
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.99 E-value=9.9e-06 Score=75.29 Aligned_cols=274 Identities=16% Similarity=0.199 Sum_probs=157.8
Q ss_pred CCEEEEEeCCCCc-c--ccccccCCCCcEEEEECCCCCEEEEEeC---CCcEEEEcCCC--Cceee-EEEeecccceeEE
Q 007283 36 GRSVIILDLSNPL-Q--VSIYGEHAYPATVARFSPNGEWIASADV---SGTVRIWGAHN--DHVLK-KEFRVLSGRIDDL 106 (609)
Q Consensus 36 ~~~~~i~~~~~~~-~--~~~~~~h~~~v~~~~~sp~g~~las~~~---d~~i~vWd~~~--~~~~~-~~~~~~~~~v~~~ 106 (609)
+..|++|++.+.. . ...+-.+.++.+-++|+|+++.|.++.. +|.|--+.++. ++... .+......+-.-+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 5678888886322 1 1223456788999999999999987654 47787777764 33211 1112222344889
Q ss_pred EECCCCCEEEEEECCCCcceEEEEEcCC-CCe--eEEEecCCcc----------EEEEEEeeCCCeEEEEe-cCCCeEEE
Q 007283 107 QWSPDGLRIVACGDGKGKSLVRAFMWDS-GTN--VGEFDGHSRR----------VLSCAFKPSRPFRIATC-GEDFLVNF 172 (609)
Q Consensus 107 ~~spdg~~l~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~h~~~----------v~~~~~~p~~~~~i~t~-~~d~~i~~ 172 (609)
+++++|++|+++.-..+ .+.++-... +.. .-....|.+. +-...|.|++.++++.. |.|+ +.+
T Consensus 95 svd~~g~~vf~AnY~~g--~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr-i~~ 171 (346)
T COG2706 95 SVDEDGRFVFVANYHSG--SVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR-IFL 171 (346)
T ss_pred EECCCCCEEEEEEccCc--eEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce-EEE
Confidence 99999999998764432 234444432 211 1122334433 77788999998755554 5664 677
Q ss_pred EeCCCCceeeec---cCcccceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCC--c--cc---cccCcCCCCccceEEEEE
Q 007283 173 YEGPPFKFKLSH---RGHSNFVNCVRFSPDGSKFISVS-SDKKGIIYDGKTA--D--KI---GELSPEDGHKGSVYAVSW 241 (609)
Q Consensus 173 ~~~~~~~~~~~~---~~h~~~v~~l~~s~dg~~l~s~~-~d~~i~iwd~~~~--~--~~---~~~~~~~~h~~~V~~l~~ 241 (609)
|+...+++.... ......-..|.|+|++++..... -+++|.+|..... + .+ ..+.....-....-.+..
T Consensus 172 y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi 251 (346)
T COG2706 172 YDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI 251 (346)
T ss_pred EEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE
Confidence 776555443221 12234457899999999765555 4899999976653 2 11 112111111245678889
Q ss_pred CCCCCeEEEEeC-CCcEEEeecccCCCCceEE-EeccCCCCCccceEEEEEEcCCeEEEEEc-CCcEEEEeCCCCCC
Q 007283 242 SPDGKQVLTASA-DKSAKVWDISEDNHGKLKK-TLTPSGSGGVDDMLVGCLWQNDFLVIVSL-GGTISIFSANDLEK 315 (609)
Q Consensus 242 spd~~~l~s~s~-d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~i~~~~~~~~~~ 315 (609)
+|||++|..+-. ...|.+|.+... .+++.- ...+.+ +..-.-+.+...+++|+++.. +.++.+|..+....
T Consensus 252 s~dGrFLYasNRg~dsI~~f~V~~~-~g~L~~~~~~~te--g~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG 325 (346)
T COG2706 252 SPDGRFLYASNRGHDSIAVFSVDPD-GGKLELVGITPTE--GQFPRDFNINPSGRFLIAANQKSDNITVFERDKETG 325 (346)
T ss_pred CCCCCEEEEecCCCCeEEEEEEcCC-CCEEEEEEEeccC--CcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCc
Confidence 999999887743 236777777543 222211 111111 000011222234566666554 45788887765443
No 269
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.98 E-value=6e-07 Score=83.34 Aligned_cols=237 Identities=16% Similarity=0.218 Sum_probs=139.8
Q ss_pred CccCcCceeEEeecCCC-CeEEEe--CCCEEEEEeCCCCccccccccCCC--CcEEEEECCCCCEEEEEeCC-----CcE
Q 007283 12 PSTERGRGILISGHPKS-NSILYT--NGRSVIILDLSNPLQVSIYGEHAY--PATVARFSPNGEWIASADVS-----GTV 81 (609)
Q Consensus 12 ~~~~~~~~~~~~~~~~~-~~l~~~--~~~~~~i~~~~~~~~~~~~~~h~~--~v~~~~~sp~g~~las~~~d-----~~i 81 (609)
|-+.||= .+..+|.. ..++.. -|.-..++|..++.....+....+ .-=.-.|||||++|.+...| |.|
T Consensus 2 ~lP~RgH--~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~I 79 (305)
T PF07433_consen 2 PLPARGH--GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVI 79 (305)
T ss_pred CCCcccc--ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEE
Confidence 4455554 67788844 444444 267888999988877654332111 11234799999999986554 789
Q ss_pred EEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECC--------C-------CcceEEEEEcCCCCeeEE--E--e
Q 007283 82 RIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDG--------K-------GKSLVRAFMWDSGTNVGE--F--D 142 (609)
Q Consensus 82 ~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~--------~-------~~~~~~~~~~~~~~~~~~--~--~ 142 (609)
-|||...+-....++..+--.--.+.+.|||+.|+....| + ...-+.+.+-.+++.+.. + .
T Consensus 80 gVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~ 159 (305)
T PF07433_consen 80 GVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD 159 (305)
T ss_pred EEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc
Confidence 9999984333334566554455678899999877765422 0 001122222334554443 3 3
Q ss_pred cCCccEEEEEEeeCCCeEEEEecCCC-------eEEEEeCCC-Cceee----eccCcccceEEEEEcCCCCEEEEEe-CC
Q 007283 143 GHSRRVLSCAFKPSRPFRIATCGEDF-------LVNFYEGPP-FKFKL----SHRGHSNFVNCVRFSPDGSKFISVS-SD 209 (609)
Q Consensus 143 ~h~~~v~~~~~~p~~~~~i~t~~~d~-------~i~~~~~~~-~~~~~----~~~~h~~~v~~l~~s~dg~~l~s~~-~d 209 (609)
.|...|..+++.+++.. +..+-..+ .+-++.... ..... ....-.+++-+|+++++|..++..+ ..
T Consensus 160 ~~~lSiRHLa~~~~G~V-~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG 238 (305)
T PF07433_consen 160 LHQLSIRHLAVDGDGTV-AFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG 238 (305)
T ss_pred ccccceeeEEecCCCcE-EEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC
Confidence 46778999999998853 22221111 122222111 00000 0122346899999999999776655 46
Q ss_pred CcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEE
Q 007283 210 KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAK 258 (609)
Q Consensus 210 ~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~ 258 (609)
+.+.+||..+++.+.... -..+..++-.+++ +++|.+ .|.+.
T Consensus 239 g~~~~~d~~tg~~~~~~~-----l~D~cGva~~~~~-f~~ssG-~G~~~ 280 (305)
T PF07433_consen 239 GRVAVWDAATGRLLGSVP-----LPDACGVAPTDDG-FLVSSG-QGQLI 280 (305)
T ss_pred CEEEEEECCCCCEeeccc-----cCceeeeeecCCc-eEEeCC-CccEE
Confidence 789999999998776543 2236677777766 555554 45433
No 270
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.93 E-value=6.6e-08 Score=94.63 Aligned_cols=147 Identities=19% Similarity=0.280 Sum_probs=120.4
Q ss_pred cCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCC
Q 007283 456 APDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTA 535 (609)
Q Consensus 456 sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~ 535 (609)
+-|...+|.|...|.|.+|++..+.+.....-.+|.+.|+++.++.+-..+-|++.|..+-.|+....... ..+..-..
T Consensus 67 s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~-~~~~~~~~ 145 (541)
T KOG4547|consen 67 SLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVII-RIWKEQKP 145 (541)
T ss_pred cCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceee-eeeccCCC
Confidence 34556789999999999999999888766666799999999999999999999999999999997665443 33555677
Q ss_pred ceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-C-----CCe-EEEEeCCCcEEEEEcc
Q 007283 536 RINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-D-----EHS-VVSSGEDACVRVWRLT 607 (609)
Q Consensus 536 ~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~-----~~~-l~s~s~D~~i~~W~~~ 607 (609)
.+.+++++||+++|++|+ ++|++|++.+. +......||.+.|.+++|. . +.+ |.+...+.-+.+|-+.
T Consensus 146 ~~~sl~is~D~~~l~~as--~~ik~~~~~~k--evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 146 LVSSLCISPDGKILLTAS--RQIKVLDIETK--EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred ccceEEEcCCCCEEEecc--ceEEEEEccCc--eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 789999999999999886 57999999864 4456668899999999997 4 344 4457778899999764
No 271
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.90 E-value=3.4e-06 Score=81.45 Aligned_cols=244 Identities=13% Similarity=0.117 Sum_probs=141.4
Q ss_pred ccCcCceeEEeecCCCCeEEEeCC-----------CEEEEEeCCCCcccccccc----C---CCCcEEEEECCCCCEEEE
Q 007283 13 STERGRGILISGHPKSNSILYTNG-----------RSVIILDLSNPLQVSIYGE----H---AYPATVARFSPNGEWIAS 74 (609)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~i~~~~~~~~~~~~~~----h---~~~v~~~~~sp~g~~las 74 (609)
...+++ .+ ++|||+.|+.++. ..|.+||..+.+....+.- + ...-...++||||++|..
T Consensus 45 ~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V 121 (352)
T TIGR02658 45 GGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLF 121 (352)
T ss_pred ccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEE
Confidence 344555 34 9999988765544 7899999999887655432 1 112347899999999987
Q ss_pred EeC--CCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCe----eEEEecCCccE
Q 007283 75 ADV--SGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTN----VGEFDGHSRRV 148 (609)
Q Consensus 75 ~~~--d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~h~~~v 148 (609)
... +..|-|.|+.+++.+.. ... .+...-+..++++ .++.|.|+.. ..+..=+.++. ...|.+...++
T Consensus 122 ~n~~p~~~V~VvD~~~~kvv~e-i~v-p~~~~vy~t~e~~-~~~~~~Dg~~---~~v~~d~~g~~~~~~~~vf~~~~~~v 195 (352)
T TIGR02658 122 YQFSPSPAVGVVDLEGKAFVRM-MDV-PDCYHIFPTANDT-FFMHCRDGSL---AKVGYGTKGNPKIKPTEVFHPEDEYL 195 (352)
T ss_pred ecCCCCCEEEEEECCCCcEEEE-EeC-CCCcEEEEecCCc-cEEEeecCce---EEEEecCCCceEEeeeeeecCCcccc
Confidence 663 68899999999875542 222 1111222222222 2233444331 11111111110 01111111111
Q ss_pred EEE-EEee-CCCeEEEEecCCCeEEEEeCC-----CCceeee--cc----C-cccceEEEEEcCCCCEEEEEe-------
Q 007283 149 LSC-AFKP-SRPFRIATCGEDFLVNFYEGP-----PFKFKLS--HR----G-HSNFVNCVRFSPDGSKFISVS------- 207 (609)
Q Consensus 149 ~~~-~~~p-~~~~~i~t~~~d~~i~~~~~~-----~~~~~~~--~~----~-h~~~v~~l~~s~dg~~l~s~~------- 207 (609)
..= .|.+ ++...+++.. +.+.+-|.. ..+.... +. + ....+.-++++|+|+.+..+.
T Consensus 196 ~~rP~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~t 273 (352)
T TIGR02658 196 INHPAYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWT 273 (352)
T ss_pred ccCCceEcCCCcEEEEecC--CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCcccc
Confidence 110 3455 6665455444 777777732 1111111 11 1 223344599999999777643
Q ss_pred ---CCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCC-eEEEEe-CCCcEEEeecccCCCCceEEEe
Q 007283 208 ---SDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGK-QVLTAS-ADKSAKVWDISEDNHGKLKKTL 274 (609)
Q Consensus 208 ---~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~-~l~s~s-~d~~i~iwd~~~~~~~~~~~~~ 274 (609)
..+.+.++|..+++.+..+.. + ..+..++|+||++ +|++.. .++.|.+.|.. .++.++.+
T Consensus 274 hk~~~~~V~ViD~~t~kvi~~i~v--G--~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~---t~k~i~~i 338 (352)
T TIGR02658 274 HKTASRFLFVVDAKTGKRLRKIEL--G--HEIDSINVSQDAKPLLYALSTGDKTLYIFDAE---TGKELSSV 338 (352)
T ss_pred ccCCCCEEEEEECCCCeEEEEEeC--C--CceeeEEECCCCCeEEEEeCCCCCcEEEEECc---CCeEEeee
Confidence 225799999999998887742 3 4689999999999 777665 57889999986 45555555
No 272
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.88 E-value=8.9e-06 Score=77.76 Aligned_cols=217 Identities=13% Similarity=0.177 Sum_probs=140.7
Q ss_pred ecCCCCeEEEeCCCEEEEEeCCCCcccccccc------CCCC--c---EEEE-ECC-CCCEEEEEeCCCcEEEEcCCCCc
Q 007283 24 GHPKSNSILYTNGRSVIILDLSNPLQVSIYGE------HAYP--A---TVAR-FSP-NGEWIASADVSGTVRIWGAHNDH 90 (609)
Q Consensus 24 ~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~------h~~~--v---~~~~-~sp-~g~~las~~~d~~i~vWd~~~~~ 90 (609)
++.||..|++-+++.|++||-.+.+....--+ -+.+ + .-+. |++ +|.++|..|..+ .-|-+.-.+-
T Consensus 274 ~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGk-aFi~~~~~~~ 352 (668)
T COG4946 274 ANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGK-AFIMRPWDGY 352 (668)
T ss_pred cCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCc-EEEECCCCCe
Confidence 46688999999999999999877654321101 1111 1 1121 454 799999988654 3333322222
Q ss_pred eeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeE
Q 007283 91 VLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLV 170 (609)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i 170 (609)
.++ -.+.+.|.-..+.-|++-++ +|...++ .+-+++.+.+ ....+.+.-+.|.++..+|+|.+ ++.+.....+
T Consensus 353 ~iq---v~~~~~VrY~r~~~~~e~~v-igt~dgD-~l~iyd~~~~-e~kr~e~~lg~I~av~vs~dGK~-~vvaNdr~el 425 (668)
T COG4946 353 SIQ---VGKKGGVRYRRIQVDPEGDV-IGTNDGD-KLGIYDKDGG-EVKRIEKDLGNIEAVKVSPDGKK-VVVANDRFEL 425 (668)
T ss_pred eEE---cCCCCceEEEEEccCCcceE-EeccCCc-eEEEEecCCc-eEEEeeCCccceEEEEEcCCCcE-EEEEcCceEE
Confidence 221 13556688888888877433 3433333 2335554443 34556777889999999999985 5555555566
Q ss_pred EEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCC----cEEEEeCCCCccccccCcCCCCccceEEEEECCCCC
Q 007283 171 NFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDK----KGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGK 246 (609)
Q Consensus 171 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~ 246 (609)
-+.|++++.....-+...+-|+...|+|++++||-+--+| .|+++|...++....-. ..+.=.+-+|.||++
T Consensus 426 ~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT----~ta~DfsPaFD~d~r 501 (668)
T COG4946 426 WVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT----PTAYDFSPAFDPDGR 501 (668)
T ss_pred EEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC----CcccccCcccCCCCc
Confidence 6668888877666666677899999999999999887665 57899988776543222 223345788999999
Q ss_pred eEEEEe
Q 007283 247 QVLTAS 252 (609)
Q Consensus 247 ~l~s~s 252 (609)
+|.--|
T Consensus 502 yLYfLs 507 (668)
T COG4946 502 YLYFLS 507 (668)
T ss_pred EEEEEe
Confidence 876554
No 273
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.86 E-value=9.1e-06 Score=75.52 Aligned_cols=277 Identities=13% Similarity=0.093 Sum_probs=151.4
Q ss_pred CCcEEEEcCCCCce--eeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEe----cCCccEEEE
Q 007283 78 SGTVRIWGAHNDHV--LKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFD----GHSRRVLSC 151 (609)
Q Consensus 78 d~~i~vWd~~~~~~--~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~h~~~v~~~ 151 (609)
++-|.+|++++... -..++-...+.++-++|+|++++|.++.......-+-.+.|+......++. ....+-..+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 56799999985432 112233456678999999999999888754333345567777531111221 111233778
Q ss_pred EEeeCCCeEEEEecCCCeEEEEeCCC-Ccee--eeccCcccc----------eEEEEEcCCCCEEEEEeC-CCcEEEEeC
Q 007283 152 AFKPSRPFRIATCGEDFLVNFYEGPP-FKFK--LSHRGHSNF----------VNCVRFSPDGSKFISVSS-DKKGIIYDG 217 (609)
Q Consensus 152 ~~~p~~~~~i~t~~~d~~i~~~~~~~-~~~~--~~~~~h~~~----------v~~l~~s~dg~~l~s~~~-d~~i~iwd~ 217 (609)
++++++++++++--.-+.|.++-... +... .....|... +.+..|+|++++|++..- --.|.+|+.
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999998776666668888885422 2111 111122222 778899999998887753 336889998
Q ss_pred CCCccccccCcCCCCccceEEEEECCCCCeEEEEeC-CCcEEEeecccCCCCce--EEEeccC---CCCCccceEEEEEE
Q 007283 218 KTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA-DKSAKVWDISEDNHGKL--KKTLTPS---GSGGVDDMLVGCLW 291 (609)
Q Consensus 218 ~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~-d~~i~iwd~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~ 291 (609)
..++.-..-...-.....=..|.|+|++++....+. +++|-+|+.+.. .++. ++.+..- ..+......+....
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~ 253 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDTLPEDFTGTNWAAAIHISP 253 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEeeeeccCccccCCCCceeEEEECC
Confidence 866542211111112344578999999998777765 789999998753 2222 2222111 11111111122233
Q ss_pred cCCeEEEEEc-CCcEEEEeCCCCCCCcee---eeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecC
Q 007283 292 QNDFLVIVSL-GGTISIFSANDLEKSPLQ---LSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQG 355 (609)
Q Consensus 292 ~~~~~~~~~~-~g~i~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~ 355 (609)
++.+|++... ...|.+|.++........ ...+-.......+.+.+.-++++.-.+.+|.++..+
T Consensus 254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 4445544322 235666766554332211 111222233444443333334444455667777543
No 274
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=1e-08 Score=98.81 Aligned_cols=203 Identities=16% Similarity=0.271 Sum_probs=145.5
Q ss_pred ccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCc------eeeEEEeecccceeEEEECCCCCEEEEEECCCC
Q 007283 50 VSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDH------VLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKG 123 (609)
Q Consensus 50 ~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~------~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~ 123 (609)
+..|.||...|..++--.+.+-+++++.|+||++|.+.... .+..+++.|..+|..+-|-.|-+.++++..+
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~g-- 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGG-- 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCc--
Confidence 44578999999998877777889999999999999886421 3566778899999999999999888876432
Q ss_pred cceEEEEEcCCCCeeEEEe---cCCccEEEEEEee--CCCeEEEEecCCCeEEEEeCCCCceeeec-----cCcccceEE
Q 007283 124 KSLVRAFMWDSGTNVGEFD---GHSRRVLSCAFKP--SRPFRIATCGEDFLVNFYEGPPFKFKLSH-----RGHSNFVNC 193 (609)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~p--~~~~~i~t~~~d~~i~~~~~~~~~~~~~~-----~~h~~~v~~ 193 (609)
+.+|+--.++.+.... .|. .+.-+..-| +.+.+++.|+...+++++|.+...+..++ .+....+.+
T Consensus 806 ---iHlWDPFigr~Laq~~dapk~~-a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ 881 (1034)
T KOG4190|consen 806 ---IHLWDPFIGRLLAQMEDAPKEG-AGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRA 881 (1034)
T ss_pred ---ceeecccccchhHhhhcCcccC-CCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeE
Confidence 3444433455544321 222 222222223 45556777789999999998877665543 345567889
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEE-eec
Q 007283 194 VRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKV-WDI 262 (609)
Q Consensus 194 l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~i-wd~ 262 (609)
++..+.|++++.+-.+|.+.+.|.++|+.+..+.+. ......++ .|..+.|+....|.++.+ |-.
T Consensus 882 iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm---ecdllqla-apsdq~L~~saldHslaVnWha 947 (1034)
T KOG4190|consen 882 IAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM---ECDLLQLA-APSDQALAQSALDHSLAVNWHA 947 (1034)
T ss_pred EEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc---cchhhhhc-CchhHHHHhhcccceeEeeehh
Confidence 999999999999999999999999999988776532 22233333 356667777778888888 854
No 275
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=4.4e-06 Score=84.56 Aligned_cols=153 Identities=14% Similarity=0.154 Sum_probs=110.0
Q ss_pred ceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeC-----------CCeEEEEecCCCeE
Q 007283 102 RIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPS-----------RPFRIATCGEDFLV 170 (609)
Q Consensus 102 ~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~-----------~~~~i~t~~~d~~i 170 (609)
+-.++.|+|.|.....+ +. .+.+.+-..-+.+..+..|...|+++.|.|- ...+||++...|.|
T Consensus 17 N~~A~Dw~~~GLiAygs--hs---lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 17 NRNAADWSPSGLIAYGS--HS---LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred cccccccCccceEEEec--Cc---eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 46788899998433322 22 3444444455667788899999999999763 23568888888999
Q ss_pred EEEeCCCCceeeeccCcccceEEEEEcC---CC-CEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECC-CC
Q 007283 171 NFYEGPPFKFKLSHRGHSNFVNCVRFSP---DG-SKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSP-DG 245 (609)
Q Consensus 171 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~---dg-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~ 245 (609)
.+||.........+..|..++..++|-+ +. ..|+.-..-.++-+|+..+|+++..... +| ....++.+.| |.
T Consensus 92 il~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y--s~-~iLs~f~~DPfd~ 168 (1062)
T KOG1912|consen 92 ILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY--SH-EILSCFRVDPFDS 168 (1062)
T ss_pred EEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc--CC-cceeeeeeCCCCc
Confidence 9999888777777888899999888865 34 3666677788999999999988766531 22 2344588888 45
Q ss_pred CeEEEEeCCCcEEEeec
Q 007283 246 KQVLTASADKSAKVWDI 262 (609)
Q Consensus 246 ~~l~s~s~d~~i~iwd~ 262 (609)
+.+..-+..|.+.+.+.
T Consensus 169 rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 169 RHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred ceEEEEccCceEEEEec
Confidence 66666666777777764
No 276
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.84 E-value=3.7e-06 Score=94.43 Aligned_cols=240 Identities=12% Similarity=0.081 Sum_probs=146.8
Q ss_pred eeEEeecCC-CCeEEEe-CCCEEEEEeCCCCcccccccc--CC------------CCcEEEEECCCCCEEEEEe-CCCcE
Q 007283 19 GILISGHPK-SNSILYT-NGRSVIILDLSNPLQVSIYGE--HA------------YPATVARFSPNGEWIASAD-VSGTV 81 (609)
Q Consensus 19 ~~~~~~~~~-~~~l~~~-~~~~~~i~~~~~~~~~~~~~~--h~------------~~v~~~~~sp~g~~las~~-~d~~i 81 (609)
|-.++.+++ |+.++.. +.++|.++|...... ..+.+ .. ..-..++++++++.|..++ ..+.|
T Consensus 570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i-~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 570 PGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFI-VQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred CceEEEECCCCeEEEEECCCCeEEEEeCCCCEE-EEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 345777765 4444443 357899999865433 22322 11 1246789999988766555 45789
Q ss_pred EEEcCCCCceeeEEEeec-----------------ccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEec-
Q 007283 82 RIWGAHNDHVLKKEFRVL-----------------SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDG- 143 (609)
Q Consensus 82 ~vWd~~~~~~~~~~~~~~-----------------~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 143 (609)
+++|..++.+. .+.+. -.....++|+|++..+..+..+. ..++.++...+.. ..+.+
T Consensus 649 r~id~~~~~V~--tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~--~~I~v~d~~~g~v-~~~~G~ 723 (1057)
T PLN02919 649 REIDFVNETVR--TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ--HQIWEYNISDGVT-RVFSGD 723 (1057)
T ss_pred EEEecCCCEEE--EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC--CeEEEEECCCCeE-EEEecC
Confidence 99998765421 22110 01235789999654544433222 2344444333321 11211
Q ss_pred --------C------CccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeecc------------C---------cc
Q 007283 144 --------H------SRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHR------------G---------HS 188 (609)
Q Consensus 144 --------h------~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~------------~---------h~ 188 (609)
+ -.....++++|++..++++-+.++.|+.||..++....... + ..
T Consensus 724 G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l 803 (1057)
T PLN02919 724 GYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLL 803 (1057)
T ss_pred CccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhc
Confidence 1 12345799999998667777788999999976543221100 0 11
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCc----------CCCCccceEEEEECCCCCeEEEEeCCCcEE
Q 007283 189 NFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSP----------EDGHKGSVYAVSWSPDGKQVLTASADKSAK 258 (609)
Q Consensus 189 ~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~----------~~~h~~~V~~l~~spd~~~l~s~s~d~~i~ 258 (609)
..-..++|+++|..+++-+.+++|++||..++........ ..+.-.....++++++|+.+++-+.++.|+
T Consensus 804 ~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir 883 (1057)
T PLN02919 804 QHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR 883 (1057)
T ss_pred cCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence 1235889999999888888899999999877654321100 011123467899999999999999999999
Q ss_pred Eeeccc
Q 007283 259 VWDISE 264 (609)
Q Consensus 259 iwd~~~ 264 (609)
+||+..
T Consensus 884 vid~~~ 889 (1057)
T PLN02919 884 YLDLNK 889 (1057)
T ss_pred EEECCC
Confidence 999864
No 277
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.83 E-value=2.3e-05 Score=75.83 Aligned_cols=252 Identities=13% Similarity=0.110 Sum_probs=131.7
Q ss_pred CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeC----------CCcEEEEcCCCCceeeEEEeecc------
Q 007283 37 RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADV----------SGTVRIWGAHNDHVLKKEFRVLS------ 100 (609)
Q Consensus 37 ~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~----------d~~i~vWd~~~~~~~~~~~~~~~------ 100 (609)
+++.+.|..+.+.+..+..-..+- .+ +||||+.|..+.. +..|.+||..+.+... ++..-.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~-~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA-DIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe-EEccCCCchhhc
Confidence 689999998887765443212222 23 9999999875544 7899999999877543 232211
Q ss_pred -cceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCC--
Q 007283 101 -GRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP-- 177 (609)
Q Consensus 101 -~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~-- 177 (609)
.....+++||||++|+...... ...+.+.+....+.+.++.- |++...+.++.....+.+-|...
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p-~~~V~VvD~~~~kvv~ei~v-----------p~~~~vy~t~e~~~~~~~~Dg~~~~ 171 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSP-SPAVGVVDLEGKAFVRMMDV-----------PDCYHIFPTANDTFFMHCRDGSLAK 171 (352)
T ss_pred cCccceEEECCCCCEEEEecCCC-CCEEEEEECCCCcEEEEEeC-----------CCCcEEEEecCCccEEEeecCceEE
Confidence 1234789999999998765332 22455666666665555432 33333233322222222222111
Q ss_pred ------Cce-ee---eccCcccceE-EEEEcC-CCCEEEEEeCCCcEEEEeCCC-----CccccccCcCC----CCccce
Q 007283 178 ------FKF-KL---SHRGHSNFVN-CVRFSP-DGSKFISVSSDKKGIIYDGKT-----ADKIGELSPED----GHKGSV 236 (609)
Q Consensus 178 ------~~~-~~---~~~~h~~~v~-~l~~s~-dg~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~----~h~~~V 236 (609)
++. .. .+.+...++. .-.|++ +|+++..... |++.+.|... .+.+..+.... =..+..
T Consensus 172 v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~ 250 (352)
T TIGR02658 172 VGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGW 250 (352)
T ss_pred EEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcc
Confidence 110 00 1111000000 004456 7766554444 9999998433 22222221110 023455
Q ss_pred EEEEECCCCCeEEEEeC----------CCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCC-eEEEEE-cCCc
Q 007283 237 YAVSWSPDGKQVLTASA----------DKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQND-FLVIVS-LGGT 304 (609)
Q Consensus 237 ~~l~~spd~~~l~s~s~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~g~ 304 (609)
.-++++|++++++.... .++|.++|.. .++.+..+..... -..+.+..++. .+++.. .++.
T Consensus 251 q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~---t~kvi~~i~vG~~----~~~iavS~Dgkp~lyvtn~~s~~ 323 (352)
T TIGR02658 251 QQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAK---TGKRLRKIELGHE----IDSINVSQDAKPLLYALSTGDKT 323 (352)
T ss_pred eeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECC---CCeEEEEEeCCCc----eeeEEECCCCCeEEEEeCCCCCc
Confidence 66999999998777421 2578888876 3455554432211 01122222344 444443 4566
Q ss_pred EEEEeCC
Q 007283 305 ISIFSAN 311 (609)
Q Consensus 305 i~~~~~~ 311 (609)
+.+++..
T Consensus 324 VsViD~~ 330 (352)
T TIGR02658 324 LYIFDAE 330 (352)
T ss_pred EEEEECc
Confidence 7777754
No 278
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.82 E-value=1.4e-07 Score=88.15 Aligned_cols=97 Identities=24% Similarity=0.319 Sum_probs=77.3
Q ss_pred ecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECC
Q 007283 164 CGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSP 243 (609)
Q Consensus 164 ~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp 243 (609)
.|..+.+.+|..+.++. ....||...++.|+|+||+++|+++..|..|++-..-.-..+..+ .-||+.-|..++.-+
T Consensus 128 agD~~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf--clGH~eFVS~isl~~ 204 (390)
T KOG3914|consen 128 AGDVYSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF--CLGHKEFVSTISLTD 204 (390)
T ss_pred cCCceeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh--ccccHhheeeeeecc
Confidence 45556777777665433 345689999999999999999999999999998765554555544 248999999999976
Q ss_pred CCCeEEEEeCCCcEEEeeccc
Q 007283 244 DGKQVLTASADKSAKVWDISE 264 (609)
Q Consensus 244 d~~~l~s~s~d~~i~iwd~~~ 264 (609)
+ +.|+++|+|+++++||+..
T Consensus 205 ~-~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 205 N-YLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred C-ceeeecCCCCcEEEEeccc
Confidence 5 5689999999999999973
No 279
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=4.2e-06 Score=81.53 Aligned_cols=305 Identities=15% Similarity=0.231 Sum_probs=169.8
Q ss_pred eeEEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeC-----------CCcEEEEcCC
Q 007283 19 GILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADV-----------SGTVRIWGAH 87 (609)
Q Consensus 19 ~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~-----------d~~i~vWd~~ 87 (609)
.+-+.++|.|.+|++.--..|.+|-..+=.+.+.|. |. .|.-+.|||+-+||+|=+. ...++|||+.
T Consensus 213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeeEEecCCceEEEEEeccceeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 346889999999999877779999876655555453 55 4999999999999998332 2579999999
Q ss_pred CCceeeEEEeeccc--ce-eEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecC---CccEEEEEEeeCCCeEE
Q 007283 88 NDHVLKKEFRVLSG--RI-DDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGH---SRRVLSCAFKPSRPFRI 161 (609)
Q Consensus 88 ~~~~~~~~~~~~~~--~v-~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~~~~~p~~~~~i 161 (609)
++. +++.|....+ .+ .-..||.|+++++..+.+. +.++++.+ ...+.+- ...|....|+|.+.. |
T Consensus 291 tG~-lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~s------isIyEtps-f~lld~Kslki~gIr~FswsP~~~l-l 361 (698)
T KOG2314|consen 291 TGL-LKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNS------ISIYETPS-FMLLDKKSLKISGIRDFSWSPTSNL-L 361 (698)
T ss_pred ccc-hhcceeccCCCccccceEEeccCCceeEEeccce------EEEEecCc-eeeecccccCCccccCcccCCCcce-E
Confidence 976 3445555322 22 3468999999999876432 33344433 1222221 245667788898653 3
Q ss_pred EE-ecC--C--CeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCcccccc
Q 007283 162 AT-CGE--D--FLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSS----------DKKGIIYDGKTADKIGEL 226 (609)
Q Consensus 162 ~t-~~~--d--~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~----------d~~i~iwd~~~~~~~~~~ 226 (609)
|= ... + ..+.+-.++..+.+++.+-|...=..|.|-.+|.+|+.--. -..+-|+.++..+. ..-
T Consensus 362 AYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI-pve 440 (698)
T KOG2314|consen 362 AYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI-PVE 440 (698)
T ss_pred EEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC-Cce
Confidence 31 110 0 12233334444433333333322234677788888775321 11233444333221 110
Q ss_pred CcCCCCccceEEEEECCCCCeEEEEeCC---CcEEEeecccCC-CCceEEEeccCCCCCccceEEEEEEc--CCeEEEE-
Q 007283 227 SPEDGHKGSVYAVSWSPDGKQVLTASAD---KSAKVWDISEDN-HGKLKKTLTPSGSGGVDDMLVGCLWQ--NDFLVIV- 299 (609)
Q Consensus 227 ~~~~~h~~~V~~l~~spd~~~l~s~s~d---~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~- 299 (609)
. -.-+..|...+|-|.|..++..+.. .++.+|.+.... ..++++.+... ..-...|+ +.+++++
T Consensus 441 ~--velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~-------~~N~vfwsPkG~fvvva~ 511 (698)
T KOG2314|consen 441 V--VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKK-------FANTVFWSPKGRFVVVAA 511 (698)
T ss_pred e--eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhccc-------ccceEEEcCCCcEEEEEE
Confidence 0 1245678999999999988877653 568888776311 11222222110 11123344 4455544
Q ss_pred --EcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecC
Q 007283 300 --SLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYD 346 (609)
Q Consensus 300 --~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~d 346 (609)
+..|.+..++..-..-.......|.. -+.+.+ ++.+++++|++.-
T Consensus 512 l~s~~g~l~F~D~~~a~~k~~~~~eh~~-at~veW-DPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 512 LVSRRGDLEFYDTDYADLKDTASPEHFA-ATEVEW-DPTGRYVVTSSSS 558 (698)
T ss_pred ecccccceEEEecchhhhhhccCccccc-cccceE-CCCCCEEEEeeeh
Confidence 44677888876521111111122321 123334 4567888888753
No 280
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.80 E-value=8.2e-08 Score=96.01 Aligned_cols=287 Identities=17% Similarity=0.255 Sum_probs=171.8
Q ss_pred ccceEEEEECCCCCeEEEEeCCCcEEEeecccC-CCCceEEEeccCCCCCccceEEEEEEc----CCeEEEEEcCCcEEE
Q 007283 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISED-NHGKLKKTLTPSGSGGVDDMLVGCLWQ----NDFLVIVSLGGTISI 307 (609)
Q Consensus 233 ~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~i~~ 307 (609)
.+.+..+..+|.|+-++.++.-| +.+-|+... ...+.+..+++-.. .+ .-|+ .++-++.......-+
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~v---ad----~qws~h~a~~~wiVsts~qkaii 95 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQV---AD----VQWSPHPAKPYWIVSTSNQKAII 95 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchh---cc----eecccCCCCceeEEecCcchhhh
Confidence 35677888999999999988765 555566432 12233333332211 11 1122 223333333333345
Q ss_pred EeCCCCC--CCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEec
Q 007283 308 FSANDLE--KSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGF 385 (609)
Q Consensus 308 ~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (609)
|++.... .....+.||...|+.+.|....+..+++++.|-.+..|+...-. .+
T Consensus 96 wnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~---------~p---------------- 150 (1081)
T KOG0309|consen 96 WNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH---------RP---------------- 150 (1081)
T ss_pred hhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC---------cc----------------
Confidence 6543222 22346789999999999998888899999999999999753210 00
Q ss_pred cceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEE
Q 007283 386 DNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIG 465 (609)
Q Consensus 386 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~g 465 (609)
++.|.. |+.. .+.+.++--...+.+.
T Consensus 151 ---~ys~~~----------------------------------------w~s~-----------asqVkwnyk~p~vlas 176 (1081)
T KOG0309|consen 151 ---FYSTSS----------------------------------------WRSA-----------ASQVKWNYKDPNVLAS 176 (1081)
T ss_pred ---eeeeec----------------------------------------cccc-----------CceeeecccCcchhhh
Confidence 111100 0000 1112222212223344
Q ss_pred eCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCC-CCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECC
Q 007283 466 SQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPD-VSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSP 544 (609)
Q Consensus 466 s~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~-~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~ 544 (609)
+....|++||.+.+. .....+++|...|+.++|..- ...+.+.+.|+++++||........+.......+|+--+|-|
T Consensus 177 shg~~i~vwd~r~gs-~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~P 255 (1081)
T KOG0309|consen 177 SHGNDIFVWDLRKGS-TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLP 255 (1081)
T ss_pred ccCCceEEEeccCCC-cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccc
Confidence 566789999998664 235677889999999999654 567888999999999997765443444445566787777877
Q ss_pred CC--cEEEEEeCCCeEEEEEcCCC--------CCcceeEeccccCCeEEEEEc---------C--CCeEEEEeCCCcEEE
Q 007283 545 NN--SMVATGSLDTCVIIYEIDKP--------ASSRMTIKGAHLGGVYGLAFT---------D--EHSVVSSGEDACVRV 603 (609)
Q Consensus 545 d~--~~l~s~s~D~~v~vw~~~~~--------~~~~~~~~~~h~~~v~~~~~s---------~--~~~l~s~s~D~~i~~ 603 (609)
=| ..+--.-.+..|..++.+.. ...-.....||.+.|..+.|. | +-.|+|=|.|..+++
T Consensus 256 fg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrl 335 (1081)
T KOG0309|consen 256 FGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRL 335 (1081)
T ss_pred cCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEe
Confidence 43 33332223334444443211 111233456899998877763 1 124999999999999
Q ss_pred EEcc
Q 007283 604 WRLT 607 (609)
Q Consensus 604 W~~~ 607 (609)
|.++
T Consensus 336 WpI~ 339 (1081)
T KOG0309|consen 336 WPID 339 (1081)
T ss_pred eecc
Confidence 9985
No 281
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.79 E-value=5.9e-08 Score=106.11 Aligned_cols=217 Identities=16% Similarity=0.254 Sum_probs=151.1
Q ss_pred CCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEe-cCCcc
Q 007283 69 GEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFD-GHSRR 147 (609)
Q Consensus 69 g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~ 147 (609)
++..+.+..+++..-|......+ ....+-..|..+.=+|-..+.++.+.+ ..++.|.|..+.++..+. .-...
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~~---~~k~~v~~v~r~~sHp~~~~Yltgs~d---gsv~~~~w~~~~~v~~~rt~g~s~ 2253 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGASV---MIKHPVENVRRMTSHPSDPYYLTGSQD---GSVRMFEWGHGQQVVCFRTAGNSR 2253 (2439)
T ss_pred cccCCcccCCccccceeccccee---EeecccCceeeecCCCCCceEEecCCC---ceEEEEeccCCCeEEEeeccCcch
Confidence 34444455566665565443222 222334456666667766666665432 247889998888877664 22378
Q ss_pred EEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEe---CCCcEEEEeCCCCcccc
Q 007283 148 VLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVS---SDKKGIIYDGKTADKIG 224 (609)
Q Consensus 148 v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~---~d~~i~iwd~~~~~~~~ 224 (609)
|+.+.|+-+|.. +..+..|+.+-+|...+ +.....+.|....+...|-. ..+++++ +++.+.+||........
T Consensus 2254 vtr~~f~~qGnk-~~i~d~dg~l~l~q~~p-k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s 2329 (2439)
T KOG1064|consen 2254 VTRSRFNHQGNK-FGIVDGDGDLSLWQASP-KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNS 2329 (2439)
T ss_pred hhhhhhcccCCc-eeeeccCCceeecccCC-cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccc
Confidence 999999988875 77788899999998763 44456677888888888866 5567765 57899999954333222
Q ss_pred ccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCc
Q 007283 225 ELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGT 304 (609)
Q Consensus 225 ~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 304 (609)
.+ ...|.+.++++++.|..++|++||.+|.|++||++. .++++++.. .....++++++..|.
T Consensus 2330 ~v--~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rq---rql~h~~~~-------------~~~~~~f~~~ss~g~ 2391 (2439)
T KOG1064|consen 2330 LV--HTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQ---RQLRHTFQA-------------LDTREYFVTGSSEGN 2391 (2439)
T ss_pred ee--eeecCCCceEEEEcCcceEEEecCCcCcEEEeehHH---HHHHHHhhh-------------hhhhheeeccCcccc
Confidence 22 257999999999999999999999999999999973 344444321 112457888999999
Q ss_pred EEEEeCCCC
Q 007283 305 ISIFSANDL 313 (609)
Q Consensus 305 i~~~~~~~~ 313 (609)
++||.+.+.
T Consensus 2392 ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2392 IKIWRLSEF 2400 (2439)
T ss_pred eEEEEcccc
Confidence 999998754
No 282
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.78 E-value=2.6e-07 Score=83.17 Aligned_cols=115 Identities=21% Similarity=0.354 Sum_probs=78.8
Q ss_pred eeEEEEcCC-CCEEEEEeCCCcEEEEEecCCeeee------eE--------EEecCCCceEEEEECCCCCEEEEEeCCCe
Q 007283 450 VTASAIAPD-GSEAIIGSQDGKLRVYSIRGDTLTE------EA--------VLEKHRGAVSVIRYSPDVSMFASGDVNRE 514 (609)
Q Consensus 450 ~~~~~~sp~-g~~l~~gs~dg~i~iw~~~~~~~~~------~~--------~~~~h~~~i~~v~~s~~~~~l~s~s~d~~ 514 (609)
+++..|+|. ...+.-.+..|+|++-|++...+-. .. .+.+-...|..+.|+|+|+++++-+. .+
T Consensus 224 ItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-lt 302 (460)
T COG5170 224 ITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LT 302 (460)
T ss_pred HhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ce
Confidence 555667773 3456667778999999986332100 00 11222457889999999999999776 47
Q ss_pred EEEEEccCCceEEeeecCCC------------Cce---EEEEECCCCcEEEEEeCCCeEEEEEcCC
Q 007283 515 AIVWDRVSREVKLKNMLYHT------------ARI---NCLAWSPNNSMVATGSLDTCVIIYEIDK 565 (609)
Q Consensus 515 v~iwd~~~~~~~~~~~~~h~------------~~i---~~l~~s~d~~~l~s~s~D~~v~vw~~~~ 565 (609)
+++||+.....+++....|. +.| -.+.||.|.+.+.+|+..+.--++..++
T Consensus 303 vkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 303 VKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred EEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecccc
Confidence 99999876555555543342 222 3578999999999999999888887543
No 283
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.77 E-value=4.9e-08 Score=106.70 Aligned_cols=186 Identities=18% Similarity=0.301 Sum_probs=136.6
Q ss_pred CCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEee-cccceeEEEECCCCCEEEE-EECCCCcceEEEEEcC
Q 007283 56 HAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRV-LSGRIDDLQWSPDGLRIVA-CGDGKGKSLVRAFMWD 133 (609)
Q Consensus 56 h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~-~~~~v~~~~~spdg~~l~~-~~~~~~~~~~~~~~~~ 133 (609)
|=.+|.++.-+|.-.+-+||+.||.||+|....++.+. .++. .+..|+.+.|+..|..... .|||. +-.|.
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~-~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~------l~l~q 2279 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVV-CFRTAGNSRVTRSRFNHQGNKFGIVDGDGD------LSLWQ 2279 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEE-EeeccCcchhhhhhhcccCCceeeeccCCc------eeecc
Confidence 44678888889999999999999999999887655222 2222 2367999999998865543 33332 44566
Q ss_pred CC-CeeEEEecCCccEEEEEEeeCCCeEEEEec---CCCeEEEEeC-CCCceeeeccCcccceEEEEEcCCCCEEEEEeC
Q 007283 134 SG-TNVGEFDGHSRRVLSCAFKPSRPFRIATCG---EDFLVNFYEG-PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSS 208 (609)
Q Consensus 134 ~~-~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~---~d~~i~~~~~-~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~ 208 (609)
.+ +.....+.|......+.|-.. .+++.| .++.+.+||. .+.........|...++++++.|.-+.|++|+.
T Consensus 2280 ~~pk~~~s~qchnk~~~Df~Fi~s---~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2280 ASPKPYTSWQCHNKALSDFRFIGS---LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred cCCcceeccccCCccccceeeeeh---hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCC
Confidence 54 344567788877777777552 355553 3477899983 233333334789999999999999999999999
Q ss_pred CCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeeccc
Q 007283 209 DKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE 264 (609)
Q Consensus 209 d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~ 264 (609)
+|.+++||.+..+.++.+.. +. ...++++++..|.++||++++
T Consensus 2357 ~G~v~l~D~rqrql~h~~~~------------~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2357 KGEVCLFDIRQRQLRHTFQA------------LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred cCcEEEeehHHHHHHHHhhh------------hh-hhheeeccCcccceEEEEccc
Confidence 99999999988777665531 33 467899999999999999874
No 284
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.76 E-value=0.0001 Score=74.35 Aligned_cols=171 Identities=17% Similarity=0.202 Sum_probs=120.2
Q ss_pred CCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCe
Q 007283 58 YPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTN 137 (609)
Q Consensus 58 ~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~ 137 (609)
....|++|+.+..|||.|+.||.++|-.+.++..-. ..+ | |++.+. +. .
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~-~~~--------------g--laa~sn-----------Ls---m 63 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDL-NKS--------------G--LAAASN-----------LS---M 63 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcc-ccc--------------c--cccccc-----------cc---h
Confidence 346899999999999999999999999887643100 000 1 222110 00 1
Q ss_pred eEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeec--cCcccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 007283 138 VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSH--RGHSNFVNCVRFSPDGSKFISVSSDKKGIIY 215 (609)
Q Consensus 138 ~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~--~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iw 215 (609)
-.++.||...|..+.|..+... +.|...+|.|.+|-.-.+...-.+ ...+..|.+++|+.||..++.+..||.|++=
T Consensus 64 NQtLeGH~~sV~vvTWNe~~QK-LTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVG 142 (1189)
T KOG2041|consen 64 NQTLEGHNASVMVVTWNENNQK-LTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVG 142 (1189)
T ss_pred hhhhccCcceEEEEEecccccc-ccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEE
Confidence 2357899999999999887764 889999999999976555443332 2345678999999999999999999999875
Q ss_pred eCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeeccc
Q 007283 216 DGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE 264 (609)
Q Consensus 216 d~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~ 264 (609)
.+... .|..-. .++ -....+.|++|.+.++.+-..|.+.++|...
T Consensus 143 svdGN-RIwgKe-Lkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqg 187 (1189)
T KOG2041|consen 143 SVDGN-RIWGKE-LKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQG 187 (1189)
T ss_pred eeccc-eecchh-cch--heccceeecccHHHHHhhhcCCcEEEecccc
Confidence 54332 222110 111 1234688999999888887889999999754
No 285
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.74 E-value=1.3e-08 Score=64.52 Aligned_cols=37 Identities=30% Similarity=0.679 Sum_probs=34.6
Q ss_pred cccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEc
Q 007283 49 QVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWG 85 (609)
Q Consensus 49 ~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd 85 (609)
.+..+.+|++.|++++|+|++++||+++.|++|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4567899999999999999999999999999999997
No 286
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.65 E-value=4e-05 Score=69.23 Aligned_cols=225 Identities=16% Similarity=0.229 Sum_probs=120.5
Q ss_pred EeecCCCCeEEEeCCCEEEEEeCCCCccc--cccccCCCC---cEEEEECCCCCEEEEEeCCCcEEEEcCCCCceee--E
Q 007283 22 ISGHPKSNSILYTNGRSVIILDLSNPLQV--SIYGEHAYP---ATVARFSPNGEWIASADVSGTVRIWGAHNDHVLK--K 94 (609)
Q Consensus 22 ~~~~~~~~~l~~~~~~~~~i~~~~~~~~~--~~~~~h~~~---v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~--~ 94 (609)
+..+++|+.|+...+..+.|=...++..- ....-.+++ =..++||||+.+||.+...|+|+++|+....... .
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p 82 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPP 82 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCc
Confidence 45667888888777777777665544321 111222332 4678999999999999999999999997543210 0
Q ss_pred --EE-eecccceeEEEECCCC------CEEEEEECCCCcceEEEEEcCCC-----CeeEE--EecC-CccEEEEEEeeCC
Q 007283 95 --EF-RVLSGRIDDLQWSPDG------LRIVACGDGKGKSLVRAFMWDSG-----TNVGE--FDGH-SRRVLSCAFKPSR 157 (609)
Q Consensus 95 --~~-~~~~~~v~~~~~spdg------~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~~h-~~~v~~~~~~p~~ 157 (609)
.+ ......|..+.|-+-. ..|+++.-.. .++-+....+ ....+ |..| ...|.++.++|..
T Consensus 83 ~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G---~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 83 AMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRG---QLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred ccccCCccccceeeeEeeccccccccceeEEEEeccc---eeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 01 1123467777776521 2344443111 1223332211 22222 3333 5679999999998
Q ss_pred CeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCC--EEEEEeCCCc------EEEEeCCCCccccccCcC
Q 007283 158 PFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGS--KFISVSSDKK------GIIYDGKTADKIGELSPE 229 (609)
Q Consensus 158 ~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~--~l~s~~~d~~------i~iwd~~~~~~~~~~~~~ 229 (609)
...++.|.....-..+. .-...+++=....+.. ..++...|.. -.+|..-+.+.... .
T Consensus 160 ~LLlVgG~~~~~~~~s~-----------a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~---~ 225 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSK-----------ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSR---Q 225 (282)
T ss_pred CEEEEeccCCCCCcccc-----------ccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeec---c
Confidence 76555554332100000 0011122222222211 1122222221 12222111111111 1
Q ss_pred CCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283 230 DGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS 263 (609)
Q Consensus 230 ~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~ 263 (609)
......|..|..||||+.|++...+|.|.+|++.
T Consensus 226 ~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 226 GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence 1235679999999999999999999999999985
No 287
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=9.6e-06 Score=81.38 Aligned_cols=297 Identities=15% Similarity=0.208 Sum_probs=163.0
Q ss_pred ccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCC
Q 007283 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSAND 312 (609)
Q Consensus 233 ~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 312 (609)
.....++.|.....++++||.||.+++-.+........+. + ++.++
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~-----g-----------------laa~s------------ 59 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKS-----G-----------------LAAAS------------ 59 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCccccc-----c-----------------ccccc------------
Confidence 3467899999999999999999999998875321100000 0 00000
Q ss_pred CCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccc--cceeccccccceeEeeeeCCcEEEEeccceEE
Q 007283 313 LEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGY--GGKLQRKENSQIKCFAAIEEEIVTSGFDNKIW 390 (609)
Q Consensus 313 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 390 (609)
.......+.||...|.-+.|... .+.+.|...+|.|.+|.+=.+. ..+......+.+..+
T Consensus 60 nLsmNQtLeGH~~sV~vvTWNe~-~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~Sm----------------- 121 (1189)
T KOG2041|consen 60 NLSMNQTLEGHNASVMVVTWNEN-NQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSM----------------- 121 (1189)
T ss_pred ccchhhhhccCcceEEEEEeccc-cccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEE-----------------
Confidence 01112457899999999988743 4567788899999999653321 111111111111111
Q ss_pred EEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCc
Q 007283 391 RVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGK 470 (609)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~ 470 (609)
.|+.. .+.+++...++..++ ++-+|.++|...-. .....-+-++||.+.+..+-..|.
T Consensus 122 sWn~d---------------G~kIcIvYeDGavIV-GsvdGNRIwgKeLk------g~~l~hv~ws~D~~~~Lf~~ange 179 (1189)
T KOG2041|consen 122 SWNLD---------------GTKICIVYEDGAVIV-GSVDGNRIWGKELK------GQLLAHVLWSEDLEQALFKKANGE 179 (1189)
T ss_pred EEcCC---------------CcEEEEEEccCCEEE-Eeeccceecchhcc------hheccceeecccHHHHHhhhcCCc
Confidence 12111 112223333222222 22222233311000 011234567888888888888899
Q ss_pred EEEEEecCCee-----eee----EEEecCCCceEEEEE--------CCCCCEEEEEeCCCeEEEEEccCCceEEeeecCC
Q 007283 471 LRVYSIRGDTL-----TEE----AVLEKHRGAVSVIRY--------SPDVSMFASGDVNREAIVWDRVSREVKLKNMLYH 533 (609)
Q Consensus 471 i~iw~~~~~~~-----~~~----~~~~~h~~~i~~v~~--------s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h 533 (609)
.+++|.+++.. ... ..+......|..+.| -||...+|.+...|.+.|..-++...+. +...
T Consensus 180 ~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pv--v~dt 257 (1189)
T KOG2041|consen 180 THLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPV--VVDT 257 (1189)
T ss_pred EEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCe--EEec
Confidence 99999876521 110 111111222333433 3577889999999988887544433222 1222
Q ss_pred CCceEEEEECCCCcEEEEEeCCC---------eEEEEEcCCCCCcceeEeccccCCeEEEEEcCCCeEEEEeCCCcEEEE
Q 007283 534 TARINCLAWSPNNSMVATGSLDT---------CVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVW 604 (609)
Q Consensus 534 ~~~i~~l~~s~d~~~l~s~s~D~---------~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~D~~i~~W 604 (609)
.-.|....|+++|..||.++.|. .|.++..- + .....+.-...-|+++.|-....-+.-..|+.|.+=
T Consensus 258 gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~--G-~i~gtlkvpg~~It~lsWEg~gLriA~Avdsfiyfa 334 (1189)
T KOG2041|consen 258 GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY--G-HIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFA 334 (1189)
T ss_pred ccEeecceecCCCcEEEEccCcccccCccccceEEEeccc--h-hheEEEecCCceeeeeEEcCCceEEEEEecceEEEE
Confidence 35688999999999999888664 34444311 1 222223334455777777644444555566666665
Q ss_pred EccC
Q 007283 605 RLTP 608 (609)
Q Consensus 605 ~~~~ 608 (609)
++.|
T Consensus 335 nIRP 338 (1189)
T KOG2041|consen 335 NIRP 338 (1189)
T ss_pred eecc
Confidence 5554
No 288
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.64 E-value=1e-06 Score=79.02 Aligned_cols=135 Identities=18% Similarity=0.277 Sum_probs=101.4
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCC-CCEEEEEeCCCeEEEEEccC-CceEEe
Q 007283 451 TASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPD-VSMFASGDVNREAIVWDRVS-REVKLK 528 (609)
Q Consensus 451 ~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~-~~~l~s~s~d~~v~iwd~~~-~~~~~~ 528 (609)
.++.+++.+..++++..+|.+.+-+.....+...+..+.|.-.++..+|+.. -..+.+|+.|+.+..||++- .+....
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~ 204 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH 204 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence 4567788888899999999999666655556555678999999999999755 46888999999999999873 333333
Q ss_pred eecCCCCceEEEEECC-CCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc
Q 007283 529 NMLYHTARINCLAWSP-NNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT 587 (609)
Q Consensus 529 ~~~~h~~~i~~l~~s~-d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s 587 (609)
....|..+|.++.=|| +..+++||+.|-.|++||....+.. .....-.++||.+..+
T Consensus 205 n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP--l~~~~v~GGVWRi~~~ 262 (339)
T KOG0280|consen 205 NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP--LFKAKVGGGVWRIKHH 262 (339)
T ss_pred cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc--cccCccccceEEEEec
Confidence 3556899999998876 5789999999999999998643212 1122234667776654
No 289
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.62 E-value=0.00013 Score=73.55 Aligned_cols=97 Identities=12% Similarity=0.055 Sum_probs=59.9
Q ss_pred EEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEE
Q 007283 160 RIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAV 239 (609)
Q Consensus 160 ~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l 239 (609)
.+.+++.++.+..+|..+++..-.+.-.......... ++..++.++.++.+..+|..+++.+..... .+.+.+.
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~----~~~~~~~ 140 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKL----SSEVLSP 140 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeecc----CceeecC
Confidence 3666677777888887776655333222211112222 456778888999999999999987765431 1222211
Q ss_pred EECCCCCeEEEEeCCCcEEEeecc
Q 007283 240 SWSPDGKQVLTASADKSAKVWDIS 263 (609)
Q Consensus 240 ~~spd~~~l~s~s~d~~i~iwd~~ 263 (609)
... .+..++.++.++.+..||..
T Consensus 141 p~v-~~~~v~v~~~~g~l~a~d~~ 163 (377)
T TIGR03300 141 PLV-ANGLVVVRTNDGRLTALDAA 163 (377)
T ss_pred CEE-ECCEEEEECCCCeEEEEEcC
Confidence 111 24566777789999999986
No 290
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.61 E-value=1.4e-05 Score=70.95 Aligned_cols=117 Identities=10% Similarity=-0.002 Sum_probs=86.3
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeee-EEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEE-
Q 007283 450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEE-AVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKL- 527 (609)
Q Consensus 450 ~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~-~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~- 527 (609)
+..++++||++++++-+....|..|.++...--.+ .....-+..=.+.+||.....+|++.+|+++-|||++......
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA 240 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence 56788999999999999999999999875432112 2333444556788999999999999999999999987644322
Q ss_pred ---eeecCCCCceEEEEECCCCc--EEEEEeCCCeEEEEEcCCC
Q 007283 528 ---KNMLYHTARINCLAWSPNNS--MVATGSLDTCVIIYEIDKP 566 (609)
Q Consensus 528 ---~~~~~h~~~i~~l~~s~d~~--~l~s~s~D~~v~vw~~~~~ 566 (609)
+....|.+.+..+.|||-|. +|+-.-.-+-+.|-|+...
T Consensus 241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence 12335889999999998663 4444445566778887654
No 291
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.61 E-value=0.00018 Score=67.75 Aligned_cols=219 Identities=14% Similarity=0.174 Sum_probs=133.1
Q ss_pred EeecCCCCeEEEe--CCCEEEEEeCCCCccccccccCCCCcEEEEEC-CCCCEEEEEeCCCcEEEEcCCCCceee-EEEe
Q 007283 22 ISGHPKSNSILYT--NGRSVIILDLSNPLQVSIYGEHAYPATVARFS-PNGEWIASADVSGTVRIWGAHNDHVLK-KEFR 97 (609)
Q Consensus 22 ~~~~~~~~~l~~~--~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~s-p~g~~las~~~d~~i~vWd~~~~~~~~-~~~~ 97 (609)
..+.+..+.|++. .++.|+.++..++.... +... + ...+++. ++|+++++.. +.+.++|..+++... ....
T Consensus 5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~-~-~~G~~~~~~~g~l~v~~~--~~~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP-G-PNGMAFDRPDGRLYVADS--GGIAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS-S-EEEEEEECTTSEEEEEET--TCEEEEETTTTEEEEEEEEE
T ss_pred eEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC-C-CceEEEEccCCEEEEEEc--CceEEEecCCCcEEEEeecc
Confidence 4566644455554 35788889987766533 2221 2 5666777 7887777653 445666888775322 1111
Q ss_pred -e--cccceeEEEECCCCCEEEEEECCCCc-ce--EEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEE
Q 007283 98 -V--LSGRIDDLQWSPDGLRIVACGDGKGK-SL--VRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVN 171 (609)
Q Consensus 98 -~--~~~~v~~~~~spdg~~l~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~ 171 (609)
. .......+++.|+|...++....... .. .+++.++.......+...-.....++|+|++..++++-+..+.|.
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~ 159 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIW 159 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEE
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchheeecccccceeE
Confidence 1 23457889999999977765432211 11 345566555333333333455788999999987677777777777
Q ss_pred EEeCC--CCce-----eeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEEC-C
Q 007283 172 FYEGP--PFKF-----KLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWS-P 243 (609)
Q Consensus 172 ~~~~~--~~~~-----~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~s-p 243 (609)
.++.. ..+. ...+.+-....-.+++..+|+++++.-..+.|.+++.. ++.+..+.. . ...+++++|. |
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~--p-~~~~t~~~fgg~ 235 (246)
T PF08450_consen 160 RFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL--P-VPRPTNCAFGGP 235 (246)
T ss_dssp EEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE---S-SSSEEEEEEEST
T ss_pred EEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC--C-CCCEEEEEEECC
Confidence 77653 2211 11222222346779999999988877788999999987 777665532 1 3478999994 6
Q ss_pred CCCeEE
Q 007283 244 DGKQVL 249 (609)
Q Consensus 244 d~~~l~ 249 (609)
+.+.|+
T Consensus 236 ~~~~L~ 241 (246)
T PF08450_consen 236 DGKTLY 241 (246)
T ss_dssp TSSEEE
T ss_pred CCCEEE
Confidence 655443
No 292
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.53 E-value=2.9e-05 Score=87.37 Aligned_cols=199 Identities=11% Similarity=0.063 Sum_probs=128.5
Q ss_pred ceeEEeecCCCCeEEEeC--CCEEEEEeCCCCcccccccc--CC---------------CCcEEEEECC-CCCEEEEEeC
Q 007283 18 RGILISGHPKSNSILYTN--GRSVIILDLSNPLQVSIYGE--HA---------------YPATVARFSP-NGEWIASADV 77 (609)
Q Consensus 18 ~~~~~~~~~~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~--h~---------------~~v~~~~~sp-~g~~las~~~ 77 (609)
+|..++++++++.|+... .+.|.++|+.++.... +.+ .. ..-..++|+| +|.+.++...
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~t-lag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRT-LAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEE-EeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 577889998888654443 4688888987755422 211 00 1125789999 5667777778
Q ss_pred CCcEEEEcCCCCceeeEEEeec---------------ccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEE--
Q 007283 78 SGTVRIWGAHNDHVLKKEFRVL---------------SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGE-- 140 (609)
Q Consensus 78 d~~i~vWd~~~~~~~~~~~~~~---------------~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~-- 140 (609)
++.|++||..++... .+.+. -.....++|+|||++|.++..+. ..++.++.+.+.....
T Consensus 704 ~~~I~v~d~~~g~v~--~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n--~~Irv~D~~tg~~~~~~g 779 (1057)
T PLN02919 704 QHQIWEYNISDGVTR--VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES--SSIRALDLKTGGSRLLAG 779 (1057)
T ss_pred CCeEEEEECCCCeEE--EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC--CeEEEEECCCCcEEEEEe
Confidence 899999998775432 11110 11345799999998776654332 3466666654432110
Q ss_pred -----------Eec--------CCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeec-------------cCcc
Q 007283 141 -----------FDG--------HSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSH-------------RGHS 188 (609)
Q Consensus 141 -----------~~~--------h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~-------------~~h~ 188 (609)
+-. .-.....++++|++. ++++-..++.|++||..++...... .++.
T Consensus 780 g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l 858 (1057)
T PLN02919 780 GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQL 858 (1057)
T ss_pred cccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccccccc
Confidence 000 011235788999987 5777788899999997765443211 1122
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc
Q 007283 189 NFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK 222 (609)
Q Consensus 189 ~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~ 222 (609)
.....++++++|+.+++-+.++.|++||..+++.
T Consensus 859 ~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 859 SEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 3567899999999888888899999999887654
No 293
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.51 E-value=5.5e-07 Score=56.93 Aligned_cols=36 Identities=31% Similarity=0.586 Sum_probs=34.1
Q ss_pred eEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEE
Q 007283 484 EAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWD 519 (609)
Q Consensus 484 ~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd 519 (609)
..++.+|.+.|++|+|+|++.++++++.|++|++||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999997
No 294
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.50 E-value=0.00033 Score=70.64 Aligned_cols=135 Identities=11% Similarity=0.089 Sum_probs=80.7
Q ss_pred CCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceE
Q 007283 459 GSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARIN 538 (609)
Q Consensus 459 g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~ 538 (609)
+..+.+++.+|.++.||.+++....... .. ...... .++..+..++.|+.+..+|..+++...+..........
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~---~~-~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~s 314 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRD---AS-SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLT 314 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeec---cC-CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccc
Confidence 4567778889999999987775432221 11 111222 24566777788999999998777654332111111122
Q ss_pred EEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeE-EEEEcCCCeEEEEeCCCcEEEE
Q 007283 539 CLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVY-GLAFTDEHSVVSSGEDACVRVW 604 (609)
Q Consensus 539 ~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~-~~~~s~~~~l~s~s~D~~i~~W 604 (609)
.... .+..|++++.||.|.++|..++. .+... ..+...++ +-++.+ +.|+.++.||.|..+
T Consensus 315 sp~i--~g~~l~~~~~~G~l~~~d~~tG~-~~~~~-~~~~~~~~~sp~~~~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 315 APAV--VGGYLVVGDFEGYLHWLSREDGS-FVARL-KTDGSGIASPPVVVG-DGLLVQTRDGDLYAF 376 (377)
T ss_pred cCEE--ECCEEEEEeCCCEEEEEECCCCC-EEEEE-EcCCCccccCCEEEC-CEEEEEeCCceEEEe
Confidence 2222 36688899999999999987643 33333 22333333 333445 457789999988754
No 295
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=1.8e-06 Score=83.71 Aligned_cols=209 Identities=14% Similarity=0.180 Sum_probs=122.9
Q ss_pred eEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCC-------CceeeeccCcccceEEEEEcCCCCEEEEEeCCC
Q 007283 138 VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP-------FKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDK 210 (609)
Q Consensus 138 ~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~-------~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~ 210 (609)
+..+.||+..|..++--.+. .-+++++.|.++++|...+ ..+..++..|+.+|..+.|..+.+.++ +.|+
T Consensus 728 L~nf~GH~~~iRai~AidNE-NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~--ScD~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNE-NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIA--SCDG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcccc-cceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceee--eccC
Confidence 45678999988877443332 2488999999999997533 346678899999999999999987665 4689
Q ss_pred cEEEEeCCCCccccccCcCCCC--ccceEEEEECCCCCeEEEE-eCCCcEEEeecccCCCCceEEEeccCCCCCc--cce
Q 007283 211 KGIIYDGKTADKIGELSPEDGH--KGSVYAVSWSPDGKQVLTA-SADKSAKVWDISEDNHGKLKKTLTPSGSGGV--DDM 285 (609)
Q Consensus 211 ~i~iwd~~~~~~~~~~~~~~~h--~~~V~~l~~spd~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~ 285 (609)
.+.+||+..+..+.++.....| .+.|.++. +-+...+..+ +...+++++|.+.. .....+........ ...
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsc---e~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSC---EWTCELKVCNAPGPNALTR 880 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccc---cceeeEEeccCCCCchhee
Confidence 9999999888876654322222 22333332 1133344444 67899999998743 23222221111111 112
Q ss_pred EEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEE-EecCc
Q 007283 286 LVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVK-WIQGI 356 (609)
Q Consensus 286 ~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~-W~~~~ 356 (609)
.+.....++.++++-..|.+.+.+.+...... ...--......++ .+..+.++....|.++.+ |..-.
T Consensus 881 ~iaVa~~GN~lAa~LSnGci~~LDaR~G~vIN-swrpmecdllqla--apsdq~L~~saldHslaVnWhald 949 (1034)
T KOG4190|consen 881 AIAVADKGNKLAAALSNGCIAILDARNGKVIN-SWRPMECDLLQLA--APSDQALAQSALDHSLAVNWHALD 949 (1034)
T ss_pred EEEeccCcchhhHHhcCCcEEEEecCCCceec-cCCcccchhhhhc--CchhHHHHhhcccceeEeeehhcC
Confidence 23334456677777777888877755321100 0000001111111 223356677777888887 85443
No 296
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.45 E-value=6.5e-05 Score=66.77 Aligned_cols=191 Identities=14% Similarity=0.100 Sum_probs=115.7
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCC-CEEEEEECCCCcceEEEEEcCCCCeeEEEecCCc
Q 007283 68 NGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDG-LRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSR 146 (609)
Q Consensus 68 ~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 146 (609)
.--+||.|+..|...+|...+.+.+......+...|.-+.=--|. ..+..+..+ +.+++.+.+.+.... .-|..
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~snd---ht~k~~~~~~~s~~~--~~h~~ 157 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASND---HTGKTMVVSGDSNKF--AVHNQ 157 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCC---cceeEEEEecCcccc--eeecc
Confidence 345889999999999999987665544444444433211100011 122222222 234444444332211 12333
Q ss_pred c--EEEEEEeeCCCeEEEEecCCCeEEEEeCCCC-c-eee-eccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 007283 147 R--VLSCAFKPSRPFRIATCGEDFLVNFYEGPPF-K-FKL-SHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTAD 221 (609)
Q Consensus 147 ~--v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~-~-~~~-~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~ 221 (609)
. +.+++++|++.+ .++.|....+..|.++.- + ... ......+.=.+..|+.....+|++..||++.|||++.-.
T Consensus 158 ~~~~ns~~~snd~~~-~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~ 236 (344)
T KOG4532|consen 158 NLTQNSLHYSNDPSW-GSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMA 236 (344)
T ss_pred ccceeeeEEcCCCce-EEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccc
Confidence 2 789999999986 666676677888865432 1 222 122233344677899998999999999999999987643
Q ss_pred ccccc--CcCCCCccceEEEEECCCCC--eEEEEeCCCcEEEeeccc
Q 007283 222 KIGEL--SPEDGHKGSVYAVSWSPDGK--QVLTASADKSAKVWDISE 264 (609)
Q Consensus 222 ~~~~~--~~~~~h~~~V~~l~~spd~~--~l~s~s~d~~i~iwd~~~ 264 (609)
..... +....|++.+..+.|+|-|. +|+-.=.-+.+.+.|++.
T Consensus 237 tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 237 TPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN 283 (344)
T ss_pred cchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence 22111 11235899999999998664 343333457889999874
No 297
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.44 E-value=4.7e-07 Score=79.61 Aligned_cols=152 Identities=17% Similarity=0.243 Sum_probs=94.7
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEe-----CCCeEEEEEccCCceEEe
Q 007283 454 AIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGD-----VNREAIVWDRVSREVKLK 528 (609)
Q Consensus 454 ~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s-----~d~~v~iwd~~~~~~~~~ 528 (609)
+.+.-++.++++..||.+.+++.+.......+....|.+. .+.++-..+.++.++. .-+..+.|++........
T Consensus 96 ~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~ 174 (319)
T KOG4714|consen 96 ACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIP 174 (319)
T ss_pred cccccCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeecccccccccc
Confidence 3344466789999999999998764211111111112211 1122223344444432 122345565543222111
Q ss_pred eecCCCCceEEEEECCCCc-EEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc--CCCeEEEEeCCCcEEEEE
Q 007283 529 NMLYHTARINCLAWSPNNS-MVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT--DEHSVVSSGEDACVRVWR 605 (609)
Q Consensus 529 ~~~~h~~~i~~l~~s~d~~-~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s--~~~~l~s~s~D~~i~~W~ 605 (609)
.......|++++-+|..+ .+++|+.||.+-+||++... -...++.+|...||.+.|. +.+.|+++++||++.-|+
T Consensus 175 -~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 175 -SKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred -cccccccchhhhCCcccccEEEEecCCCeEEEEEccccc-chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence 111234599999999654 66789999999999987532 2245567899999999998 567899999999999999
Q ss_pred ccC
Q 007283 606 LTP 608 (609)
Q Consensus 606 ~~~ 608 (609)
.++
T Consensus 253 as~ 255 (319)
T KOG4714|consen 253 AST 255 (319)
T ss_pred CCC
Confidence 763
No 298
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.42 E-value=1.1e-05 Score=71.18 Aligned_cols=91 Identities=20% Similarity=0.253 Sum_probs=67.3
Q ss_pred EEEeCCCCceeeeccCcccceEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECC-CCCeE
Q 007283 171 NFYEGPPFKFKLSHRGHSNFVNCVRFSPDGS-KFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSP-DGKQV 248 (609)
Q Consensus 171 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~l 248 (609)
+.|+..+.+....-+.-...|++++-+|.-+ .+++|+.||.+-+||.+.......+ ...|+.++..+.|+| ++..|
T Consensus 162 ~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~--l~ahk~~i~eV~FHpk~p~~L 239 (319)
T KOG4714|consen 162 YANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL--LKAHKAEIWEVHFHPKNPEHL 239 (319)
T ss_pred eeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHH--HHHhhhhhhheeccCCCchhe
Confidence 4555554443322222233488898888755 6778889999999999877543333 357999999999999 56799
Q ss_pred EEEeCCCcEEEeecc
Q 007283 249 LTASADKSAKVWDIS 263 (609)
Q Consensus 249 ~s~s~d~~i~iwd~~ 263 (609)
++++.||.+.-||.+
T Consensus 240 ft~sedGslw~wdas 254 (319)
T KOG4714|consen 240 FTCSEDGSLWHWDAS 254 (319)
T ss_pred eEecCCCcEEEEcCC
Confidence 999999999999975
No 299
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.41 E-value=7.8e-06 Score=81.88 Aligned_cols=180 Identities=17% Similarity=0.220 Sum_probs=107.6
Q ss_pred EEeecCCCCeEEEe----CC-CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEE-EEeCCCcEEEE--cCCCCcee
Q 007283 21 LISGHPKSNSILYT----NG-RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIA-SADVSGTVRIW--GAHNDHVL 92 (609)
Q Consensus 21 ~~~~~~~~~~l~~~----~~-~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~la-s~~~d~~i~vW--d~~~~~~~ 92 (609)
.-.++|++..|+|- .+ ..++++++.+++...... -.+.-...+|||||++|| +...||...|| |+.++.
T Consensus 197 ~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-- 273 (425)
T COG0823 197 TPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-- 273 (425)
T ss_pred ccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc--
Confidence 45688888888775 23 469999998887755443 344566789999999987 66678877666 554443
Q ss_pred eEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCe-eEEEecCCccEEEEEEeeCCCeEEEEecCCCe--
Q 007283 93 KKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTN-VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFL-- 169 (609)
Q Consensus 93 ~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~-- 169 (609)
...+....+.-..-.|+|||++++.+.|..+...+.+..++.... ..++.+-... .-.++|+|..++.....++.
T Consensus 274 ~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~--~p~~SpdG~~i~~~~~~~g~~~ 351 (425)
T COG0823 274 LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNS--NPVWSPDGDKIVFESSSGGQWD 351 (425)
T ss_pred ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCc--CccCCCCCCEEEEEeccCCcee
Confidence 223444445555889999999999999888776655555554432 2223322222 55778999864444432333
Q ss_pred EEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEE
Q 007283 170 VNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISV 206 (609)
Q Consensus 170 i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~ 206 (609)
+...+..+......+ .+......-.+.|+|..+...
T Consensus 352 i~~~~~~~~~~~~~l-t~~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 352 IDKNDLASGGKIRIL-TSTYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred eEEeccCCCCcEEEc-cccccCCCCCcCCCCceEEEe
Confidence 444444332211111 112222233456666655443
No 300
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.38 E-value=0.00042 Score=62.81 Aligned_cols=148 Identities=15% Similarity=0.216 Sum_probs=78.3
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCC--ccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceE
Q 007283 194 VRFSPDGSKFISVSSDKKGIIYDGKTA--DKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLK 271 (609)
Q Consensus 194 l~~s~dg~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~ 271 (609)
++.+.+|+.||. -.|..|.|=..+.. ..+......+...-.=..++||||+.+||.+...|+|+++|+.. ...
T Consensus 3 ~~~~~~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g----~~l 77 (282)
T PF15492_consen 3 LALSSDGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG----SEL 77 (282)
T ss_pred eeecCCCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc----cee
Confidence 566788886664 45666655432221 01111111112233457899999999999999999999999863 222
Q ss_pred EEeccCC--CCCccceEEEEEEc--------CCeEEEEEcCCcEEEEeCCCC----CCCcee--eeC-CCCCeEEEEEec
Q 007283 272 KTLTPSG--SGGVDDMLVGCLWQ--------NDFLVIVSLGGTISIFSANDL----EKSPLQ--LSG-HMKNVTALTVLN 334 (609)
Q Consensus 272 ~~~~~~~--~~~~~~~~~~~~~~--------~~~~~~~~~~g~i~~~~~~~~----~~~~~~--~~~-h~~~v~~~~~~~ 334 (609)
-.+.+.. .+.....+.+..+- ...+++....|.++-|.+... -...+. +.. +...|.++.+++
T Consensus 78 f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p 157 (282)
T PF15492_consen 78 FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP 157 (282)
T ss_pred EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC
Confidence 2222111 11222222222221 114566677777777764321 111222 222 466788888876
Q ss_pred CCCCEEEEEecC
Q 007283 335 IDPKVILSSSYD 346 (609)
Q Consensus 335 ~~~~~~~t~s~d 346 (609)
...-+++.|...
T Consensus 158 ~h~LLlVgG~~~ 169 (282)
T PF15492_consen 158 KHRLLLVGGCEQ 169 (282)
T ss_pred CCCEEEEeccCC
Confidence 554444444433
No 301
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.29 E-value=4.8e-05 Score=68.92 Aligned_cols=157 Identities=12% Similarity=0.228 Sum_probs=102.1
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCe-eeeeEEEecC-----CCceEEEEECCC-CCEEEEEeCCCeEEEEE
Q 007283 447 RFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDT-LTEEAVLEKH-----RGAVSVIRYSPD-VSMFASGDVNREAIVWD 519 (609)
Q Consensus 447 ~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~-~~~~~~~~~h-----~~~i~~v~~s~~-~~~l~s~s~d~~v~iwd 519 (609)
..-+.++.+..|.+.++++ .|-.|.+|++.-.. .....-.+.| ..-|++-.|+|. ...+.-.+..|+|++-|
T Consensus 172 ~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~D 250 (460)
T COG5170 172 PYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLND 250 (460)
T ss_pred eeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehh
Confidence 3457888899888887775 57889999875221 1112223344 245788899987 45677778899999999
Q ss_pred ccCCceEEe-----e----------ecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccc-------
Q 007283 520 RVSREVKLK-----N----------MLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAH------- 577 (609)
Q Consensus 520 ~~~~~~~~~-----~----------~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h------- 577 (609)
++....... . +..-...|..+.|+|+|+++++-+. .+|++||+.-.+.....+ .-|
T Consensus 251 lRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi-~~h~~l~~~l 328 (460)
T COG5170 251 LRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTI-PMHCDLMDEL 328 (460)
T ss_pred hhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceee-chHHHHHHHH
Confidence 764322110 0 0112346889999999999987655 579999986433222222 112
Q ss_pred -----cCCe---EEEEEc-CCCeEEEEeCCCcEEEEEc
Q 007283 578 -----LGGV---YGLAFT-DEHSVVSSGEDACVRVWRL 606 (609)
Q Consensus 578 -----~~~v---~~~~~s-~~~~l~s~s~D~~i~~W~~ 606 (609)
...| ..+.|| |+..++|||.....-++..
T Consensus 329 ~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 329 NDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred HhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 1233 347788 8888889887777666653
No 302
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.28 E-value=4e-05 Score=76.84 Aligned_cols=194 Identities=17% Similarity=0.177 Sum_probs=121.3
Q ss_pred ccccCCCCcEEEEECCCCCEEEEEe--CC--CcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceE
Q 007283 52 IYGEHAYPATVARFSPNGEWIASAD--VS--GTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLV 127 (609)
Q Consensus 52 ~~~~h~~~v~~~~~sp~g~~las~~--~d--~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~ 127 (609)
.+..-...+...+|+|+++.++-.+ .. ..+.++++.+++... .....+.-...+|||||++|+.+.+..+...+
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~--i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~i 264 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV--ILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDI 264 (425)
T ss_pred EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce--eeccCCccCCccCCCCCCEEEEEECCCCCccE
Confidence 3443345678889999999988543 22 358888998765321 22245566788999999999999877766666
Q ss_pred EEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEE--eCCCCceee-eccCcccceEEEEEcCCCCEEE
Q 007283 128 RAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFY--EGPPFKFKL-SHRGHSNFVNCVRFSPDGSKFI 204 (609)
Q Consensus 128 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~--~~~~~~~~~-~~~~h~~~v~~l~~s~dg~~l~ 204 (609)
.+.+.+...... +..-.+.-..=.|+|+|..++.+.+..+.-.+| +.+.....+ ++.+-.. ..-.++|||++|+
T Consensus 265 y~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~--~~p~~SpdG~~i~ 341 (425)
T COG0823 265 YLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGN--SNPVWSPDGDKIV 341 (425)
T ss_pred EEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCC--cCccCCCCCCEEE
Confidence 666665544222 332222223557899999877777777755554 544443322 2222222 2667999999998
Q ss_pred EEeCC-Cc--EEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCC
Q 007283 205 SVSSD-KK--GIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASAD 254 (609)
Q Consensus 205 s~~~d-~~--i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d 254 (609)
..+.. |. |.+.|..++..+..+ .+.......+|.|+++++...+..
T Consensus 342 ~~~~~~g~~~i~~~~~~~~~~~~~l----t~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 342 FESSSGGQWDIDKNDLASGGKIRIL----TSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EEeccCCceeeEEeccCCCCcEEEc----cccccCCCCCcCCCCceEEEeccC
Confidence 87743 33 666666655543333 233344567788888877766543
No 303
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.25 E-value=3.4e-06 Score=77.34 Aligned_cols=139 Identities=16% Similarity=0.250 Sum_probs=101.4
Q ss_pred EEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCC----ceEEeeecCCCCceEE
Q 007283 464 IGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSR----EVKLKNMLYHTARINC 539 (609)
Q Consensus 464 ~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~----~~~~~~~~~h~~~i~~ 539 (609)
+.+-+..+.+-++.++... .+. -++.|.++.|...+.++..|+..|.|...|+..+ .... ....|...|++
T Consensus 229 s~G~sqqv~L~nvetg~~q---sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a-~rlyh~Ssvts 303 (425)
T KOG2695|consen 229 SVGLSQQVLLTNVETGHQQ---SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA-QRLYHDSSVTS 303 (425)
T ss_pred cccccceeEEEEeeccccc---ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce-EEEEcCcchhh
Confidence 3345666778888766432 222 4567889999988999999999999999998754 2222 34569999999
Q ss_pred EEECC-CCcEEEEEeCCCeEEEEEcCCCCC-cceeEeccccCCeEEEEEc---CCCeEEEEeCCCcEEEEEcc
Q 007283 540 LAWSP-NNSMVATGSLDTCVIIYEIDKPAS-SRMTIKGAHLGGVYGLAFT---DEHSVVSSGEDACVRVWRLT 607 (609)
Q Consensus 540 l~~s~-d~~~l~s~s~D~~v~vw~~~~~~~-~~~~~~~~h~~~v~~~~~s---~~~~l~s~s~D~~i~~W~~~ 607 (609)
+..-. ++++|.+++.+|+|++||..--+. .-.....||...-.-+-+. .+..++++|+|...++|.++
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~ 376 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD 376 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecc
Confidence 98876 788999999999999999863221 1134456776544444443 34578899999999999986
No 304
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.23 E-value=0.0018 Score=60.96 Aligned_cols=200 Identities=19% Similarity=0.199 Sum_probs=120.2
Q ss_pred EEEEECC-CCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEEC-CCCCEEEEEECCCCcceEEEEEcCCCCee
Q 007283 61 TVARFSP-NGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWS-PDGLRIVACGDGKGKSLVRAFMWDSGTNV 138 (609)
Q Consensus 61 ~~~~~sp-~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~~~~~ 138 (609)
..++|.+ +|+++.+--..+.|..|+..+++... +. ... ...+++. ++|..+++... . +.++++++++..
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--~~-~~~-~~G~~~~~~~g~l~v~~~~-~----~~~~d~~~g~~~ 73 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--ID-LPG-PNGMAFDRPDGRLYVADSG-G----IAVVDPDTGKVT 73 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE--EE-SSS-EEEEEEECTTSEEEEEETT-C----EEEEETTTTEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--Ee-cCC-CceEEEEccCCEEEEEEcC-c----eEEEecCCCcEE
Confidence 3578888 77777777778999999988765322 22 222 6667777 77765555432 2 234466665332
Q ss_pred --EEEe--c-CCccEEEEEEeeCCCeEEEEecCC--------CeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEE-
Q 007283 139 --GEFD--G-HSRRVLSCAFKPSRPFRIATCGED--------FLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFI- 204 (609)
Q Consensus 139 --~~~~--~-h~~~v~~~~~~p~~~~~i~t~~~d--------~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~- 204 (609)
.... . .....+.+++.|+|.. .++.... +.+..++.. ++..... ......+.++|+||++.|.
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~~G~l-y~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv 150 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDPDGNL-YVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYV 150 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-TTS-E-EEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEE
T ss_pred EEeeccCCCcccCCCceEEEcCCCCE-EEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchheee
Confidence 2221 1 3456889999999984 4443322 345555555 4433332 2345578999999998665
Q ss_pred EEeCCCcEEEEeCCCCcc-cc---ccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEecc
Q 007283 205 SVSSDKKGIIYDGKTADK-IG---ELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTP 276 (609)
Q Consensus 205 s~~~d~~i~iwd~~~~~~-~~---~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~ 276 (609)
+-+..+.|..++...... +. .+.....-.+..-.+++.++|++.++....+.|.+++.+ +++...+..
T Consensus 151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~----G~~~~~i~~ 222 (246)
T PF08450_consen 151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD----GKLLREIEL 222 (246)
T ss_dssp EETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT----SCEEEEEE-
T ss_pred cccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC----ccEEEEEcC
Confidence 556677888888653221 11 111111112346789999999988888788999999975 555555543
No 305
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.21 E-value=0.0039 Score=62.05 Aligned_cols=303 Identities=15% Similarity=0.135 Sum_probs=143.1
Q ss_pred cCCCCeEEEe----------CCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeE
Q 007283 25 HPKSNSILYT----------NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKK 94 (609)
Q Consensus 25 ~~~~~~l~~~----------~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~ 94 (609)
|||++.++.. ......|+|+++++....... ...+..+.|||+|++||-.. ++.|.+++..+++....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 4677765541 124778999998766553333 56788999999999999885 57899998877643322
Q ss_pred EEeec----------------ccceeEEEECCCCCEEEEEECC-CCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCC
Q 007283 95 EFRVL----------------SGRIDDLQWSPDGLRIVACGDG-KGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSR 157 (609)
Q Consensus 95 ~~~~~----------------~~~v~~~~~spdg~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 157 (609)
+..+. -+.-.++-|||||++|+...-+ .....+.+........ ....+..+.+..-|
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~------~yp~~~~~~YPk~G 152 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS------QYPEVESIRYPKAG 152 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE------SS-EEEEEE--BTT
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc------cCCcccccccCCCC
Confidence 22220 0123678899999999986532 2222222222111100 01134455553222
Q ss_pred CeEEEEecCCCeEEEEeCCCCceee-e----ccCcccceEEEEEcCCCCEEEEE--eCC---CcEEEEeCCCCccccccC
Q 007283 158 PFRIATCGEDFLVNFYEGPPFKFKL-S----HRGHSNFVNCVRFSPDGSKFISV--SSD---KKGIIYDGKTADKIGELS 227 (609)
Q Consensus 158 ~~~i~t~~~d~~i~~~~~~~~~~~~-~----~~~h~~~v~~l~~s~dg~~l~s~--~~d---~~i~iwd~~~~~~~~~~~ 227 (609)
... . .-.+.+++...++... . +..-...+..+.|++++..|+.. ..+ ..+.++|..++..-....
T Consensus 153 ~~n-p----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~ 227 (353)
T PF00930_consen 153 DPN-P----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLE 227 (353)
T ss_dssp S--------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEE
T ss_pred CcC-C----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEE
Confidence 210 0 0124556766554421 1 12345678999999999844433 222 235566776654322111
Q ss_pred c-CCCCccceEEEEEC-CCCC-eEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeE-EEEEc--
Q 007283 228 P-EDGHKGSVYAVSWS-PDGK-QVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFL-VIVSL-- 301 (609)
Q Consensus 228 ~-~~~h~~~V~~l~~s-pd~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-- 301 (609)
. ..+--..-....|. +++. ++.....||.-+++-++.. +...+.++. +...+.. +......++.+ +++..
T Consensus 228 e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~--~~~~~~lT~-G~~~V~~-i~~~d~~~~~iyf~a~~~~ 303 (353)
T PF00930_consen 228 ETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLD--GGKPRQLTS-GDWEVTS-ILGWDEDNNRIYFTANGDN 303 (353)
T ss_dssp EESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETT--SSEEEESS--SSS-EEE-EEEEECTSSEEEEEESSGG
T ss_pred ecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccc--ccceecccc-Cceeecc-cceEcCCCCEEEEEecCCC
Confidence 1 01111122345554 6655 4444446776666554322 222333332 2212211 22222223433 33433
Q ss_pred CCcEEEEeCCCC-CCCceeeeCCCCCeEEEEEecCCCCEEEEEe
Q 007283 302 GGTISIFSANDL-EKSPLQLSGHMKNVTALTVLNIDPKVILSSS 344 (609)
Q Consensus 302 ~g~i~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s 344 (609)
...-++|..+.. ......+.........+.+++....++.+++
T Consensus 304 p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 304 PGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp TTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred CCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 235566655433 3333333332222245566554444444544
No 306
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.15 E-value=0.0015 Score=61.23 Aligned_cols=184 Identities=15% Similarity=0.066 Sum_probs=115.6
Q ss_pred EEeecCCCCeEEEeC-----C-CEEEEEeCCC-CccccccccCCCCcEEEEECCCCCEEEEEeC----------------
Q 007283 21 LISGHPKSNSILYTN-----G-RSVIILDLSN-PLQVSIYGEHAYPATVARFSPNGEWIASADV---------------- 77 (609)
Q Consensus 21 ~~~~~~~~~~l~~~~-----~-~~~~i~~~~~-~~~~~~~~~h~~~v~~~~~sp~g~~las~~~---------------- 77 (609)
+-.|+|||++|+.+. + +.|-|||... -..+..+..|.=.==.+.+.|||+.|+.+..
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~ 134 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLD 134 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence 677999999888762 2 5788999983 3334445444322224668999987776421
Q ss_pred --CCcEEEEcCCCCceee-EEE--eecccceeEEEECCCCCEEEEEECCCCc--ceEEEEEcCCCCeeEEEe-------c
Q 007283 78 --SGTVRIWGAHNDHVLK-KEF--RVLSGRIDDLQWSPDGLRIVACGDGKGK--SLVRAFMWDSGTNVGEFD-------G 143 (609)
Q Consensus 78 --d~~i~vWd~~~~~~~~-~~~--~~~~~~v~~~~~spdg~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~-------~ 143 (609)
+..+-+=|..+++.+. ..+ ..|.-.+..+++.+||..+++....... ..-.+..++.+..+..+. .
T Consensus 135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~ 214 (305)
T PF07433_consen 135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRR 214 (305)
T ss_pred hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHh
Confidence 2244444566666433 234 3356689999999999888876532111 011133344443322222 2
Q ss_pred CCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEe
Q 007283 144 HSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVS 207 (609)
Q Consensus 144 h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~ 207 (609)
-..++-++++++++..+.+|+...+.+.+||..++++..... ...+..++-.+++ ++++.+
T Consensus 215 l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~--l~D~cGva~~~~~-f~~ssG 275 (305)
T PF07433_consen 215 LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP--LPDACGVAPTDDG-FLVSSG 275 (305)
T ss_pred hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc--cCceeeeeecCCc-eEEeCC
Confidence 346799999999999888999999999999998887764432 2335556665665 455443
No 307
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.06 E-value=7.8e-05 Score=74.21 Aligned_cols=90 Identities=14% Similarity=0.208 Sum_probs=68.7
Q ss_pred EEEecCCeeeeeE-EEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEE
Q 007283 473 VYSIRGDTLTEEA-VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVAT 551 (609)
Q Consensus 473 iw~~~~~~~~~~~-~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s 551 (609)
+|++..+++.... +.-.....|.|.+++|+...++.|+.||++++||...+.. ....+.-..+.++|+|+|..+++
T Consensus 240 iYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t---~~~ka~~~P~~iaWHp~gai~~V 316 (545)
T PF11768_consen 240 IYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT---LLAKAEFIPTLIAWHPDGAIFVV 316 (545)
T ss_pred EEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee---eeeeecccceEEEEcCCCcEEEE
Confidence 4554444332222 2235778999999999999999999999999999755422 22234456789999999999999
Q ss_pred EeCCCeEEEEEcCC
Q 007283 552 GSLDTCVIIYEIDK 565 (609)
Q Consensus 552 ~s~D~~v~vw~~~~ 565 (609)
|+.-|.+.+||+..
T Consensus 317 ~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 317 GSEQGELQCFDMAL 330 (545)
T ss_pred EcCCceEEEEEeec
Confidence 99999999999864
No 308
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.06 E-value=0.0016 Score=64.82 Aligned_cols=233 Identities=15% Similarity=0.149 Sum_probs=119.6
Q ss_pred cCceeEEeecCCCCeEEEeCCCEEEEEeCCCCccccc-cccC----------------CCCcEEEEECCCCCEEEEEeCC
Q 007283 16 RGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSI-YGEH----------------AYPATVARFSPNGEWIASADVS 78 (609)
Q Consensus 16 ~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~-~~~h----------------~~~v~~~~~sp~g~~las~~~d 78 (609)
.+.......+|+|+.|+|..++.+.+.++.++...+. ..|- -+.-..+.|||||++||....|
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred ccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence 4566799999999999999999999999876644321 1120 1123567899999999975432
Q ss_pred -Cc-----------------------------------EEEEcCCCCceeeEEEe----ecccceeEEEECCCCCEEEEE
Q 007283 79 -GT-----------------------------------VRIWGAHNDHVLKKEFR----VLSGRIDDLQWSPDGLRIVAC 118 (609)
Q Consensus 79 -~~-----------------------------------i~vWd~~~~~~~~~~~~----~~~~~v~~~~~spdg~~l~~~ 118 (609)
.. +.|+|+.+++....... ....-+..+.|++|++.|+..
T Consensus 122 ~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~ 201 (353)
T PF00930_consen 122 EREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQ 201 (353)
T ss_dssp -TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEE
T ss_pred CcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEE
Confidence 21 22334443332111111 112236788999999855554
Q ss_pred ECCCCcceEEE--EEcCCCCeeEEEec-CCccE---EEEEEe-eCCCeEEEEecCCCeEEEE--eCCCCceeeeccCccc
Q 007283 119 GDGKGKSLVRA--FMWDSGTNVGEFDG-HSRRV---LSCAFK-PSRPFRIATCGEDFLVNFY--EGPPFKFKLSHRGHSN 189 (609)
Q Consensus 119 ~~~~~~~~~~~--~~~~~~~~~~~~~~-h~~~v---~~~~~~-p~~~~~i~t~~~d~~i~~~--~~~~~~~~~~~~~h~~ 189 (609)
--++......+ .+..++........ ....| ....|. +++...+-....++--.+| +...........| .-
T Consensus 202 ~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G-~~ 280 (353)
T PF00930_consen 202 WLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSG-DW 280 (353)
T ss_dssp EEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-S-SS
T ss_pred EcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccC-ce
Confidence 43333333333 33334333222211 11111 234444 5555444444466654444 5544443322333 33
Q ss_pred ce-EEEEEcCCCCEEE-EEeCCC----cEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEe
Q 007283 190 FV-NCVRFSPDGSKFI-SVSSDK----KGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTAS 252 (609)
Q Consensus 190 ~v-~~l~~s~dg~~l~-s~~~d~----~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s 252 (609)
.| .-+.++++++.|. +|..+. .+..-+...+..+..+....+. -..+.|||++++++-..
T Consensus 281 ~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~---~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 281 EVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD---HYSASFSPDGKYYVDTY 346 (353)
T ss_dssp -EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST---TEEEEE-TTSSEEEEEE
T ss_pred eecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC---ceEEEECCCCCEEEEEE
Confidence 45 4478888877554 454422 3444455523334445432221 16899999999876543
No 309
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.00052 Score=70.58 Aligned_cols=181 Identities=17% Similarity=0.221 Sum_probs=111.7
Q ss_pred EEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecccc
Q 007283 287 VGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKE 366 (609)
Q Consensus 287 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~ 366 (609)
.+|.....+++.++..|.+++++.+... .....|... +..+..++|||.||+|.+--+.+..
T Consensus 43 s~~av~~~~~~~GtH~g~v~~~~~~~~~---~~~~~~s~~-------~~~Gey~asCS~DGkv~I~sl~~~~-------- 104 (846)
T KOG2066|consen 43 SCCAVHDKFFALGTHRGAVYLTTCQGNP---KTNFDHSSS-------ILEGEYVASCSDDGKVVIGSLFTDD-------- 104 (846)
T ss_pred HHHHhhcceeeeccccceEEEEecCCcc---ccccccccc-------ccCCceEEEecCCCcEEEeeccCCc--------
Confidence 3445567789999999999999865432 222233322 3456899999999998765321110
Q ss_pred ccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEecc
Q 007283 367 NSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINL 446 (609)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (609)
. ......
T Consensus 105 ---------------------~----------------------------------------------------~~~~df 111 (846)
T KOG2066|consen 105 ---------------------E----------------------------------------------------ITQYDF 111 (846)
T ss_pred ---------------------c----------------------------------------------------ceeEec
Confidence 0 001112
Q ss_pred CCceeEEEEcCC-----CCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 007283 447 RFPVTASAIAPD-----GSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRV 521 (609)
Q Consensus 447 ~~~~~~~~~sp~-----g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~ 521 (609)
+-++.+++++|| .+.+++|+.-| +.++.-.--......++..-.|+|.++.| .|.++|=++.+| +++||+.
T Consensus 112 ~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~ 187 (846)
T KOG2066|consen 112 KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTP 187 (846)
T ss_pred CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCCC-cEEEecc
Confidence 235677788887 45688998888 77775321011112245666789999988 688888887776 8999987
Q ss_pred CCceEEeeecCC-----CCceEEEEECCCCcEEEEEeCCCeEEEEEcC
Q 007283 522 SREVKLKNMLYH-----TARINCLAWSPNNSMVATGSLDTCVIIYEID 564 (609)
Q Consensus 522 ~~~~~~~~~~~h-----~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~ 564 (609)
.++........+ ...--.+.|.++.+ |+.|-.| +|+|..+.
T Consensus 188 ~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 188 TRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGD-SVKICSIK 233 (846)
T ss_pred ccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecCC-eEEEEEEe
Confidence 665432211111 11234578876655 5667666 58888876
No 310
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.99 E-value=0.016 Score=62.90 Aligned_cols=200 Identities=12% Similarity=0.216 Sum_probs=121.3
Q ss_pred CCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCC--C
Q 007283 58 YPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDS--G 135 (609)
Q Consensus 58 ~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~--~ 135 (609)
+.|..+.|.-++.-|.-+..+|+|.+=|.++.... ....-...|.+++||||.+.++.+...... ++-..+|+. .
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e--ivg~vd~GI~aaswS~Dee~l~liT~~~tl-l~mT~~f~~i~E 145 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE--IVGNVDNGISAASWSPDEELLALITGRQTL-LFMTKDFEPIAE 145 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee--eeeeccCceEEEeecCCCcEEEEEeCCcEE-EEEeccccchhc
Confidence 57899999999999988889999999888775421 122335689999999999988877643321 111122221 0
Q ss_pred Cee-------------------EEEecC---------------------CccEEEEEEeeCCCeEEEEe----cCC-CeE
Q 007283 136 TNV-------------------GEFDGH---------------------SRRVLSCAFKPSRPFRIATC----GED-FLV 170 (609)
Q Consensus 136 ~~~-------------------~~~~~h---------------------~~~v~~~~~~p~~~~~i~t~----~~d-~~i 170 (609)
+.+ -.|.|. .+.=+++.|--||.+ +|+. ..+ +.+
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~-fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEY-FAVSFVESETGTRKI 224 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcE-EEEEEEeccCCceeE
Confidence 001 012111 011234677777775 4441 334 789
Q ss_pred EEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEe---CCCcEEEEeCCCCccccccCc-CCCCccceEEEEECCCCC
Q 007283 171 NFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVS---SDKKGIIYDGKTADKIGELSP-EDGHKGSVYAVSWSPDGK 246 (609)
Q Consensus 171 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~---~d~~i~iwd~~~~~~~~~~~~-~~~h~~~V~~l~~spd~~ 246 (609)
++||-+ +.+...-....+.=.+++|-|.|.++++-. .|+.|.++.- +|-.-..+.. ...-...|..++|..++.
T Consensus 225 rV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 225 RVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNSNSD 302 (1265)
T ss_pred EEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecCCCC
Confidence 999866 333222222233346889999999998864 3557888853 3322111110 111223489999999999
Q ss_pred eEEE---EeCCCcEEEeecc
Q 007283 247 QVLT---ASADKSAKVWDIS 263 (609)
Q Consensus 247 ~l~s---~s~d~~i~iwd~~ 263 (609)
.|+. ......|++|-+.
T Consensus 303 iLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 303 ILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred ceeeeecccccceEEEEEec
Confidence 9888 4444559999765
No 311
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.00027 Score=67.59 Aligned_cols=207 Identities=16% Similarity=0.168 Sum_probs=132.1
Q ss_pred cccccCCCCcEEEEECCCCCEEEEEeC-CCcEEEEcCCCCcee-eEEEeecccceeEEEECC-CCCEEEEEECCCCcceE
Q 007283 51 SIYGEHAYPATVARFSPNGEWIASADV-SGTVRIWGAHNDHVL-KKEFRVLSGRIDDLQWSP-DGLRIVACGDGKGKSLV 127 (609)
Q Consensus 51 ~~~~~h~~~v~~~~~sp~g~~las~~~-d~~i~vWd~~~~~~~-~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~~~~ 127 (609)
..+..|-..|..++.|-+|.++.|.+. |+.+|++|+++-... .-.+....+.+.. .-+| |-.-+++++.-+..
T Consensus 47 KhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg--- 122 (558)
T KOG0882|consen 47 KHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSG--- 122 (558)
T ss_pred hhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEE-ecCCCCeeeeEEeecccCC---
Confidence 446788889999999999999999776 999999999863211 0111122222221 1222 23345555543322
Q ss_pred EEEEcCC--C--CeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCC-Ccee-----ee---------ccCcc
Q 007283 128 RAFMWDS--G--TNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP-FKFK-----LS---------HRGHS 188 (609)
Q Consensus 128 ~~~~~~~--~--~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~-~~~~-----~~---------~~~h~ 188 (609)
.+..+|. . .....-+-|..+|..+-+.|.+.. +++....|.|..|..+. ++.. .. +....
T Consensus 123 ~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds-~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~K 201 (558)
T KOG0882|consen 123 KIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS-AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAK 201 (558)
T ss_pred CcEEECCcCCcCccceecccccCceEEEEeeccccc-eeeccccceeEeecCCCcccCccccccccccccchhhcccccc
Confidence 2334442 1 122334578999999999998874 78888889999998762 2211 11 12234
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcC-----------------------------CCCcc-ceEE
Q 007283 189 NFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPE-----------------------------DGHKG-SVYA 238 (609)
Q Consensus 189 ~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----------------------------~~h~~-~V~~ 238 (609)
....++.|+|+|..+.+-+.|..|++++.++++.+..+-.. ..|.. .-+.
T Consensus 202 t~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~ 281 (558)
T KOG0882|consen 202 TEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTN 281 (558)
T ss_pred cCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccce
Confidence 56789999999999999999999999999988866433210 01111 1245
Q ss_pred EEECCCCCeEEEEeCCCcEEEeecc
Q 007283 239 VSWSPDGKQVLTASADKSAKVWDIS 263 (609)
Q Consensus 239 l~~spd~~~l~s~s~d~~i~iwd~~ 263 (609)
+.|...+.+|+-++.-| |++.++.
T Consensus 282 ~~fdes~~flly~t~~g-ikvin~~ 305 (558)
T KOG0882|consen 282 AVFDESGNFLLYGTILG-IKVINLD 305 (558)
T ss_pred eEEcCCCCEEEeeccee-EEEEEee
Confidence 66777777777776543 6777765
No 312
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.0019 Score=67.20 Aligned_cols=131 Identities=13% Similarity=0.193 Sum_probs=87.2
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEE--ecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCce
Q 007283 448 FPVTASAIAPDGSEAIIGSQDGKLRVYS--IRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREV 525 (609)
Q Consensus 448 ~~~~~~~~sp~g~~l~~gs~dg~i~iw~--~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~ 525 (609)
.|.++++++.+-+.+|+|-.+|.|..+. +..+..........-.++|+.+++..+++.++=+.....|.+|.+.++..
T Consensus 126 ~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p 205 (933)
T KOG2114|consen 126 SPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTP 205 (933)
T ss_pred CcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCc
Confidence 5678889999999999999999999884 21111111122234467999999999988733333456789999876653
Q ss_pred EEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCC
Q 007283 526 KLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGG 580 (609)
Q Consensus 526 ~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~ 580 (609)
..+.+..|....+|..+++-...++.++ +.-|.+|+.+..+ ...++..||...
T Consensus 206 ~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~-~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 206 SLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRG-PCFAFEVGEKKE 258 (933)
T ss_pred ceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcc-eeeeecCCCeEE
Confidence 4444667888899999997666455444 3458899877533 223443355443
No 313
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.85 E-value=0.00011 Score=67.84 Aligned_cols=146 Identities=14% Similarity=0.157 Sum_probs=103.1
Q ss_pred CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEE
Q 007283 37 RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIV 116 (609)
Q Consensus 37 ~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~ 116 (609)
..+.+.+++++.+.. |. -+..|.+..|...++++..|...|.|-+.|+... .++
T Consensus 234 qqv~L~nvetg~~qs-f~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~r------nqG------------------ 287 (425)
T KOG2695|consen 234 QQVLLTNVETGHQQS-FQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCR------NQG------------------ 287 (425)
T ss_pred ceeEEEEeecccccc-cc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeec------ccC------------------
Confidence 577888888888765 33 4677999999999999999999999999987542 111
Q ss_pred EEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEee-CCCeEEEEecCCCeEEEEeCCCCce---eeeccCcccceE
Q 007283 117 ACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKP-SRPFRIATCGEDFLVNFYEGPPFKF---KLSHRGHSNFVN 192 (609)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~i~t~~~d~~i~~~~~~~~~~---~~~~~~h~~~v~ 192 (609)
+.....++ -|...|+++..-. +++ .+.+.+-+++|++||.+..++ +..+.||.+.-.
T Consensus 288 -----~~~~a~rl-------------yh~Ssvtslq~Lq~s~q-~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a 348 (425)
T KOG2695|consen 288 -----NGWCAQRL-------------YHDSSVTSLQILQFSQQ-KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSA 348 (425)
T ss_pred -----CCcceEEE-------------EcCcchhhhhhhccccc-eEeeccCcCceeEeeehhhhcccceeeeeccccccc
Confidence 00000111 2444555554444 333 477778999999999887666 778889976443
Q ss_pred EEEE--cCCCCEEEEEeCCCcEEEEeCCCCccccccC
Q 007283 193 CVRF--SPDGSKFISVSSDKKGIIYDGKTADKIGELS 227 (609)
Q Consensus 193 ~l~~--s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~ 227 (609)
-+-+ .+....++++++|...+||..+.++.+.++.
T Consensus 349 ~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 349 YLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred ccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 3333 4556688889999999999999998877664
No 314
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.84 E-value=0.0002 Score=71.47 Aligned_cols=76 Identities=24% Similarity=0.397 Sum_probs=62.9
Q ss_pred EeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccC
Q 007283 443 TINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVS 522 (609)
Q Consensus 443 ~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~ 522 (609)
.+..+..+.+++.+|+...++.|+.||.|.+||...+.- .+....-.++.++|+|+|..+++|+..|.+.+||..-
T Consensus 255 sipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t----~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 255 SIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT----LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee----eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 345566789999999999999999999999999865532 1223445678999999999999999999999999653
No 315
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00021 Score=68.32 Aligned_cols=213 Identities=18% Similarity=0.154 Sum_probs=133.3
Q ss_pred cCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCc--eeeEEEeecccceeEEEECCCCCEEEEEEC-CCCcceEEEEE
Q 007283 55 EHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDH--VLKKEFRVLSGRIDDLQWSPDGLRIVACGD-GKGKSLVRAFM 131 (609)
Q Consensus 55 ~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~--~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-~~~~~~~~~~~ 131 (609)
-|++.|+.+.-+ --+++.+++.||.++.|.-..-. .....++.|...|..++-|-||..+.++++ +. -+++++
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dh---s~KvfD 82 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDH---SVKVFD 82 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCccc---ceeEEE
Confidence 388888877543 56789999999999999754311 122346777888999999999976666555 33 345555
Q ss_pred cCCCCeeEEEe-cCCccEEEEEEeeCCCe-EEEEe-cCCCeEEEEeCCCCc--eeeeccCcccceEEEEEcCCCCEEEEE
Q 007283 132 WDSGTNVGEFD-GHSRRVLSCAFKPSRPF-RIATC-GEDFLVNFYEGPPFK--FKLSHRGHSNFVNCVRFSPDGSKFISV 206 (609)
Q Consensus 132 ~~~~~~~~~~~-~h~~~v~~~~~~p~~~~-~i~t~-~~d~~i~~~~~~~~~--~~~~~~~h~~~v~~l~~s~dg~~l~s~ 206 (609)
......+.-++ ..-.....+..+|.+.. .+|.. -.++.+.++|....- ......-|..+|.++.++|-+..+++.
T Consensus 83 vEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi 162 (558)
T KOG0882|consen 83 VENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI 162 (558)
T ss_pred eeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeec
Confidence 54322211111 00111112222333221 13333 345678888854322 222234589999999999999988888
Q ss_pred eCCCcEEEEeCCC------CccccccC------cCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEe
Q 007283 207 SSDKKGIIYDGKT------ADKIGELS------PEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTL 274 (609)
Q Consensus 207 ~~d~~i~iwd~~~------~~~~~~~~------~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 274 (609)
...|.|.-|.... .+....+. .....+....++.|+|++..+.+-+.|..||+++... +++.+.+
T Consensus 163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~Kt---Gklvqei 239 (558)
T KOG0882|consen 163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKT---GKLVQEI 239 (558)
T ss_pred cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEecc---chhhhhh
Confidence 8889999997652 11111111 0112345678999999999999999999999999873 4444433
No 316
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.0017 Score=66.93 Aligned_cols=146 Identities=16% Similarity=0.244 Sum_probs=91.7
Q ss_pred CCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCC-----CCEEEEEeCCCcEEEEeCCCCccccccCcCC
Q 007283 156 SRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPD-----GSKFISVSSDKKGIIYDGKTADKIGELSPED 230 (609)
Q Consensus 156 ~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~d-----g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 230 (609)
.|.+ +++|+.||++.+-..-+.+....+ .-..++.+++++|| .+++++|+..| +.++.-.--...... ...
T Consensus 82 ~Gey-~asCS~DGkv~I~sl~~~~~~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~ 157 (846)
T KOG2066|consen 82 EGEY-VASCSDDGKVVIGSLFTDDEITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLS 157 (846)
T ss_pred CCce-EEEecCCCcEEEeeccCCccceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eee
Confidence 4654 999999999888754443332222 12467999999998 55789999888 766642111111111 112
Q ss_pred CCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCC-CCCccceEEEEEEcCCeEEEEEcCCcEEEEe
Q 007283 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSG-SGGVDDMLVGCLWQNDFLVIVSLGGTISIFS 309 (609)
Q Consensus 231 ~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~ 309 (609)
.-.|.|.++.|. |.++|.++.+| |++||+.. ++.+..+.+.. ....+.......|.++..++.+-..+|++..
T Consensus 158 ~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~---~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~ 231 (846)
T KOG2066|consen 158 EGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPT---RQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICS 231 (846)
T ss_pred cCccceEEEEec--CcEEEEecCCC-cEEEeccc---cceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEE
Confidence 346889999995 78999998665 89999864 22222222211 1111112233568888777788888999988
Q ss_pred CC
Q 007283 310 AN 311 (609)
Q Consensus 310 ~~ 311 (609)
+.
T Consensus 232 I~ 233 (846)
T KOG2066|consen 232 IK 233 (846)
T ss_pred Ee
Confidence 76
No 317
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=0.0083 Score=62.61 Aligned_cols=194 Identities=15% Similarity=0.153 Sum_probs=124.7
Q ss_pred EECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCC-CEEEEEECCCC-cc-eEEEEEcCC---CC-
Q 007283 64 RFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDG-LRIVACGDGKG-KS-LVRAFMWDS---GT- 136 (609)
Q Consensus 64 ~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg-~~l~~~~~~~~-~~-~~~~~~~~~---~~- 136 (609)
+++++|..+|-|+++|.|-+.+ ..-.+.+.+..+...+...-|.-++ ..|+++|.+.. .. .+++|+.+. +.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln--~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN--SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEec--ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 4689999999999999775554 3333334566666663333344444 68888886655 44 666776653 12
Q ss_pred --eeEE--Eec-----CCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCcee--ee--ccCcccceEEEEEcCCCCEE
Q 007283 137 --NVGE--FDG-----HSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFK--LS--HRGHSNFVNCVRFSPDGSKF 203 (609)
Q Consensus 137 --~~~~--~~~-----h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~--~~--~~~h~~~v~~l~~s~dg~~l 203 (609)
++++ +.+ ...++.+++.+.+-. .+|.|-.+|.|..+.+...+-. +. ...-..+|+.+.|..+++.+
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence 2211 112 245688889988855 5888999999999865432111 11 12235689999999999875
Q ss_pred EEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283 204 ISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS 263 (609)
Q Consensus 204 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~ 263 (609)
+.+..-..|.+|...... . .......|...++|-.|++-...+++++ +.-+.+|+.+
T Consensus 187 lFv~Tt~~V~~y~l~gr~-p-~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd 243 (933)
T KOG2114|consen 187 LFVATTEQVMLYSLSGRT-P-SLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSD 243 (933)
T ss_pred EEEEecceeEEEEecCCC-c-ceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCC
Confidence 566666778899876333 1 1111346777899999988666455554 4579999876
No 318
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.72 E-value=0.012 Score=54.99 Aligned_cols=213 Identities=17% Similarity=0.104 Sum_probs=114.8
Q ss_pred CEEEEEeCCCCccccccccCCCCcEEEE--ECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCE
Q 007283 37 RSVIILDLSNPLQVSIYGEHAYPATVAR--FSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLR 114 (609)
Q Consensus 37 ~~~~i~~~~~~~~~~~~~~h~~~v~~~~--~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 114 (609)
+.+..+|..+++.+-...- ........ ..+++.++..++.++.+..||..+++.+. .+.. .+.+.......++..
T Consensus 3 g~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W-~~~~-~~~~~~~~~~~~~~v 79 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLW-RFDL-PGPISGAPVVDGGRV 79 (238)
T ss_dssp SEEEEEETTTTEEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEE-EEEC-SSCGGSGEEEETTEE
T ss_pred CEEEEEECCCCCEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEE-Eeec-cccccceeeeccccc
Confidence 3566677766665433321 11111111 33456667767899999999998887543 3332 333222222223433
Q ss_pred EEEEECCCCcceEEEEEcCCCCeeEEE-ecCC---ccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccc
Q 007283 115 IVACGDGKGKSLVRAFMWDSGTNVGEF-DGHS---RRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNF 190 (609)
Q Consensus 115 l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~---~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~ 190 (609)
++...++ .+..++-.+++.+... .... ...........+.. ++.+..++.+..+|..+++..-........
T Consensus 80 ~v~~~~~----~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~ 154 (238)
T PF13360_consen 80 YVGTSDG----SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDR-LYVGTSSGKLVALDPKTGKLLWKYPVGEPR 154 (238)
T ss_dssp EEEETTS----EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTE-EEEEETCSEEEEEETTTTEEEEEEESSTT-
T ss_pred cccccee----eeEecccCCcceeeeeccccccccccccccCceEecCE-EEEEeccCcEEEEecCCCcEEEEeecCCCC
Confidence 3333222 3445555577777663 3221 11222233333543 666666888999998888776554332211
Q ss_pred ----------eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEe
Q 007283 191 ----------VNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVW 260 (609)
Q Consensus 191 ----------v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iw 260 (609)
+..-....++ .+..++.++.+..+|..+++.+.... . ..+..+ ..+++..|+.++.++++..|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~----~~~~~~-~~~~~~~l~~~~~~~~l~~~ 227 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-I----SGIYSL-PSVDGGTLYVTSSDGRLYAL 227 (238)
T ss_dssp SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-S----S-ECEC-EECCCTEEEEEETTTEEEEE
T ss_pred CCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-C----CCccCC-ceeeCCEEEEEeCCCEEEEE
Confidence 1222233344 66667777754444999988554322 1 112221 34667788888899999999
Q ss_pred eccc
Q 007283 261 DISE 264 (609)
Q Consensus 261 d~~~ 264 (609)
|++.
T Consensus 228 d~~t 231 (238)
T PF13360_consen 228 DLKT 231 (238)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 9873
No 319
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.70 E-value=0.025 Score=52.32 Aligned_cols=182 Identities=14% Similarity=0.178 Sum_probs=105.2
Q ss_pred eeEEeecCCCCeEEEeCC--CEEEEEeCCCCcccccc--ccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCc--ee
Q 007283 19 GILISGHPKSNSILYTNG--RSVIILDLSNPLQVSIY--GEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDH--VL 92 (609)
Q Consensus 19 ~~~~~~~~~~~~l~~~~~--~~~~i~~~~~~~~~~~~--~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~--~~ 92 (609)
.-.|+..|+.+.|+...+ ..++-+++. ++.++.+ .+ -+....+++..+|+|+++-..++++.+.++.... ..
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~ 101 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLD 101 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--
T ss_pred ccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccc
Confidence 558999999888877644 567777764 4554443 34 3568899999999999988889999888884321 11
Q ss_pred e---EEEe-----ecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCC---CCeeE--EE------ecCCccEEEEEE
Q 007283 93 K---KEFR-----VLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDS---GTNVG--EF------DGHSRRVLSCAF 153 (609)
Q Consensus 93 ~---~~~~-----~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~---~~~~~--~~------~~h~~~v~~~~~ 153 (609)
. ..+. ..+..+..++|.|.+++|+++...+.. +++.++. ...+. .. ......+.++++
T Consensus 102 ~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~ 178 (248)
T PF06977_consen 102 RADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPK---RLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSY 178 (248)
T ss_dssp EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSE---EEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEE
T ss_pred hhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCCh---hhEEEccccCccceeeccccccccccceeccccceEE
Confidence 1 1121 124568999999999888888765543 3455543 21111 11 123356789999
Q ss_pred eeCCCeEEEEecCCCeEEEEeCCCCceee--eccC--c-----ccceEEEEEcCCCCEEEEE
Q 007283 154 KPSRPFRIATCGEDFLVNFYEGPPFKFKL--SHRG--H-----SNFVNCVRFSPDGSKFISV 206 (609)
Q Consensus 154 ~p~~~~~i~t~~~d~~i~~~~~~~~~~~~--~~~~--h-----~~~v~~l~~s~dg~~l~s~ 206 (609)
+|.....++-......+...| ..++... .+.. | -.+...|+|.++|++.++.
T Consensus 179 ~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 179 DPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp ETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred cCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 998877788888888888888 3344322 2222 1 2457889999999765543
No 320
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.69 E-value=0.009 Score=64.81 Aligned_cols=201 Identities=18% Similarity=0.191 Sum_probs=115.9
Q ss_pred CceeEEeecCCCCeEE-EeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcC----CCCce
Q 007283 17 GRGILISGHPKSNSIL-YTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGA----HNDHV 91 (609)
Q Consensus 17 ~~~~~~~~~~~~~~l~-~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~----~~~~~ 91 (609)
+.-+.+.+.-+.+.|+ ...++.+++.|.++... -..+.=.+.|.+++||||++++|-...++++-+=+. -..+.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 3444666777776654 44556777777766443 223333567999999999999998877777644322 11111
Q ss_pred e------------------eEEEeeccc---------------------ceeEEEECCCCCEEEEEEC--CCCcceEEEE
Q 007283 92 L------------------KKEFRVLSG---------------------RIDDLQWSPDGLRIVACGD--GKGKSLVRAF 130 (609)
Q Consensus 92 ~------------------~~~~~~~~~---------------------~v~~~~~spdg~~l~~~~~--~~~~~~~~~~ 130 (609)
+ ..+|++..+ .-..++|.-||+++++..- ..+...+++
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV- 226 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV- 226 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE-
Confidence 1 123432211 1134899999998887541 111123444
Q ss_pred EcCCCCeeEEEecC-CccEEEEEEeeCCCeEEEEe---cCCCeEEEEeC---CCCceeeeccCcccceEEEEEcCCCCEE
Q 007283 131 MWDSGTNVGEFDGH-SRRVLSCAFKPSRPFRIATC---GEDFLVNFYEG---PPFKFKLSHRGHSNFVNCVRFSPDGSKF 203 (609)
Q Consensus 131 ~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~i~t~---~~d~~i~~~~~---~~~~~~~~~~~h~~~v~~l~~s~dg~~l 203 (609)
|++...+...... .+.=.+++|-|.|.. +|+- +.|..|.+++- +.+.....+......+..++|+.++..|
T Consensus 227 -~drEg~Lns~se~~~~l~~~LsWkPsgs~-iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiL 304 (1265)
T KOG1920|consen 227 -YDREGALNSTSEPVEGLQHSLSWKPSGSL-IAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDIL 304 (1265)
T ss_pred -ecccchhhcccCcccccccceeecCCCCe-EeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCce
Confidence 4443222211111 112246899999885 5553 44556777752 2233333333344458999999999998
Q ss_pred EE---EeCCCcEEEEeCCCCc
Q 007283 204 IS---VSSDKKGIIYDGKTAD 221 (609)
Q Consensus 204 ~s---~~~d~~i~iwd~~~~~ 221 (609)
|+ ......+.+|-..+.+
T Consensus 305 Av~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 305 AVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred eeeecccccceEEEEEecCeE
Confidence 87 4455569999755443
No 321
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.64 E-value=0.012 Score=55.92 Aligned_cols=192 Identities=16% Similarity=0.188 Sum_probs=91.9
Q ss_pred ccCcCceeEEeecCCCCeEEEeCCCEEEEEeCC-CCcc-ccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCc
Q 007283 13 STERGRGILISGHPKSNSILYTNGRSVIILDLS-NPLQ-VSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDH 90 (609)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~-~~~~-~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~ 90 (609)
.+..|.++.+.+..++...++...+. ||... .++. .....+-.+.+..+..++||+|+|.++...-.+-||--...
T Consensus 100 ~~lpgs~~~i~~l~~~~~~l~~~~G~--iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~ 177 (302)
T PF14870_consen 100 SKLPGSPFGITALGDGSAELAGDRGA--IYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT 177 (302)
T ss_dssp TT-SS-EEEEEEEETTEEEEEETT----EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS
T ss_pred CCCCCCeeEEEEcCCCcEEEEcCCCc--EEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc
Confidence 34457777777666665554444332 33333 3332 22233445678889999999999998777777888754221
Q ss_pred eeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEec-------CCccEEEEEEeeCCCeEEEE
Q 007283 91 VLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDG-------HSRRVLSCAFKPSRPFRIAT 163 (609)
Q Consensus 91 ~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~~~~~p~~~~~i~t 163 (609)
-...-+.-+..|..+.|+||+...+....+ .++.-. ......++.. ....+..++|.+++. +.|+
T Consensus 178 -w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg----~~~~s~--~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~ 249 (302)
T PF14870_consen 178 -WQPHNRNSSRRIQSMGFSPDGNLWMLARGG----QIQFSD--DPDDGETWSEPIIPIKTNGYGILDLAYRPPNE-IWAV 249 (302)
T ss_dssp --EEEE--SSS-EEEEEE-TTS-EEEEETTT----EEEEEE---TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEE
T ss_pred -ceEEccCccceehhceecCCCCEEEEeCCc----EEEEcc--CCCCccccccccCCcccCceeeEEEEecCCCC-EEEE
Confidence 112233456789999999998765654222 122222 1112222222 122378899998876 4776
Q ss_pred ecCCCeEEEEe-CCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 007283 164 CGEDFLVNFYE-GPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIY 215 (609)
Q Consensus 164 ~~~d~~i~~~~-~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iw 215 (609)
|+....++--| ..+++....-..-...++.+.|.++.+-++ .+.+|.+.-|
T Consensus 250 gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 250 GGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp ESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred eCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence 66654333223 344444433333445578888876654444 5677776655
No 322
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.59 E-value=0.024 Score=59.76 Aligned_cols=180 Identities=15% Similarity=0.111 Sum_probs=97.7
Q ss_pred CCCcEEEEECCCCCEEEEEe------CCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEE
Q 007283 57 AYPATVARFSPNGEWIASAD------VSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAF 130 (609)
Q Consensus 57 ~~~v~~~~~sp~g~~las~~------~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~ 130 (609)
...+..+++||||+.+|... .|+.-+||-...+... ..+.. ........|+|||+.|.++.++.. +.++.
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~--~~~v~ 424 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNT--VVRVI 424 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeec-CCCCCCceECCCCCceEEEecCcc--eEEEe
Confidence 34688999999999998544 3555677755433222 22222 224788999999998888876532 22222
Q ss_pred EcCCCCeeEEEe--------cCCccEEEEEEeeCCCeEEEEecCCCeEEEE---eCCCCceee----ec-cCcccceEEE
Q 007283 131 MWDSGTNVGEFD--------GHSRRVLSCAFKPSRPFRIATCGEDFLVNFY---EGPPFKFKL----SH-RGHSNFVNCV 194 (609)
Q Consensus 131 ~~~~~~~~~~~~--------~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~---~~~~~~~~~----~~-~~h~~~v~~l 194 (609)
.-+....+..+. .....|.++.|+|||..+++.. ++.+.+- ....+.... .+ .+-...+..+
T Consensus 425 ~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 425 RDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred ccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 222222222111 2245699999999998644433 3455552 222332111 11 1222346789
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCC-CccccccCcCCCCccceEEEEECCC
Q 007283 195 RFSPDGSKFISVSSDKKGIIYDGKT-ADKIGELSPEDGHKGSVYAVSWSPD 244 (609)
Q Consensus 195 ~~s~dg~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~h~~~V~~l~~spd 244 (609)
.|.+++.+ +++..++...+|.+.- +.....+ ........+.+++-+++
T Consensus 503 ~W~~~~~L-~V~~~~~~~~v~~v~vDG~~~~~~-~~~n~~~~v~~vaa~~~ 551 (591)
T PRK13616 503 DWRTGDSL-VVGRSDPEHPVWYVNLDGSNSDAL-PSRNLSAPVVAVAASPS 551 (591)
T ss_pred eEecCCEE-EEEecCCCCceEEEecCCcccccc-CCCCccCceEEEecCCc
Confidence 99999984 4565555555554321 2111111 11123456777777663
No 323
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.57 E-value=0.0029 Score=65.55 Aligned_cols=105 Identities=16% Similarity=0.324 Sum_probs=74.2
Q ss_pred EEEeeCCCeEEEEec----CCCeEEEEe--CCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccc
Q 007283 151 CAFKPSRPFRIATCG----EDFLVNFYE--GPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIG 224 (609)
Q Consensus 151 ~~~~p~~~~~i~t~~----~d~~i~~~~--~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~ 224 (609)
.+|||..++ +|+++ ..|.+.+|- ++|... .+. .-.+++++|+|..-.|+.|=.-|.+.+|...+.+. +
T Consensus 21 ~SWHPsePl-fAVA~fS~er~GSVtIfadtGEPqr~-Vt~---P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-h 94 (1416)
T KOG3617|consen 21 SSWHPSEPL-FAVASFSPERGGSVTIFADTGEPQRD-VTY---PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-H 94 (1416)
T ss_pred cccCCCCce-eEEEEecCCCCceEEEEecCCCCCcc-ccc---ceehhhhccChHHHHHhhccccceeEEEecCCcee-e
Confidence 478888875 55543 335666663 332211 111 12256799999987788887888999997655442 3
Q ss_pred ccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283 225 ELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS 263 (609)
Q Consensus 225 ~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~ 263 (609)
+. ...|+..|..+.|||+|..|+++-.-|.+.+|...
T Consensus 95 tv--~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 95 TV--VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ee--ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 33 24699999999999999999999999999999765
No 324
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.065 Score=53.81 Aligned_cols=233 Identities=15% Similarity=0.130 Sum_probs=140.1
Q ss_pred ceeecCCCccCcCceeEEeecCCCCeEEEeC--CCEEEEEeCCCCccccccc-cCCCCcEEEEECCCCCEEEEEeC---C
Q 007283 5 AETYTCVPSTERGRGILISGHPKSNSILYTN--GRSVIILDLSNPLQVSIYG-EHAYPATVARFSPNGEWIASADV---S 78 (609)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~i~~~~~~~~~~~~~-~h~~~v~~~~~sp~g~~las~~~---d 78 (609)
.+++++.....-..|..+...+.++.+.-++ .+.+.+.|+...+...... |. .-..++++|+++.+..+.. +
T Consensus 62 ~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~ 139 (381)
T COG3391 62 SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGN 139 (381)
T ss_pred cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCC
Confidence 4455554444335667888899988655444 4789999977666544322 22 4567899999988876554 6
Q ss_pred CcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeE-E---EecCCccEEEEEEe
Q 007283 79 GTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVG-E---FDGHSRRVLSCAFK 154 (609)
Q Consensus 79 ~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~h~~~v~~~~~~ 154 (609)
+++.+-|..+.+.... ...-..+ ..++++|+|+++..+..+. ..+.+.+-+...... . ...-...-..+.+.
T Consensus 140 ~~vsvid~~t~~~~~~-~~vG~~P-~~~a~~p~g~~vyv~~~~~--~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~ 215 (381)
T COG3391 140 NTVSVIDAATNKVTAT-IPVGNTP-TGVAVDPDGNKVYVTNSDD--NTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVD 215 (381)
T ss_pred ceEEEEeCCCCeEEEE-EecCCCc-ceEEECCCCCeEEEEecCC--CeEEEEeCCCcceeccccccccccCCCCceEEEC
Confidence 7788888777665544 2222233 8899999999777765322 234444433222111 0 01111223457888
Q ss_pred eCCCeEEEEecCC--CeEEEEeCCCCceeee--ccCcccceEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCccccccCcC
Q 007283 155 PSRPFRIATCGED--FLVNFYEGPPFKFKLS--HRGHSNFVNCVRFSPDGSKFISVSS-DKKGIIYDGKTADKIGELSPE 229 (609)
Q Consensus 155 p~~~~~i~t~~~d--~~i~~~~~~~~~~~~~--~~~h~~~v~~l~~s~dg~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~ 229 (609)
|++....++.... ..+...|..+...... ..+-. .-..+.++|+|+.+.+... .+.+.+-|..+..........
T Consensus 216 ~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~ 294 (381)
T COG3391 216 PDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG 294 (381)
T ss_pred CCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence 9998766665544 5777777766554433 11222 4456789999998777744 478888887776655544322
Q ss_pred CCCccceEEEEECCC
Q 007283 230 DGHKGSVYAVSWSPD 244 (609)
Q Consensus 230 ~~h~~~V~~l~~spd 244 (609)
......+..+++.+.
T Consensus 295 ~~~~~~~~~~~~~~~ 309 (381)
T COG3391 295 NEALGEPVSIAISPL 309 (381)
T ss_pred ccccccceeccceee
Confidence 222234555555554
No 325
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.54 E-value=0.00047 Score=69.88 Aligned_cols=112 Identities=19% Similarity=0.266 Sum_probs=85.4
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceE---E--
Q 007283 453 SAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVK---L-- 527 (609)
Q Consensus 453 ~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~---~-- 527 (609)
-+++..+++++.|+.-|.+++|+-.++.+. .....+-.+.+.....|++..++|.|+..+.|-++-+...... +
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~-~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t 117 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMR-KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVT 117 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchhhh-cccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeec
Confidence 345677899999999999999987665543 2233345567778889999999999999999988865542211 1
Q ss_pred eeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCC
Q 007283 528 KNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDK 565 (609)
Q Consensus 528 ~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~ 565 (609)
..-+.|...|+|++||+|++.+.+|..-|+|.+-.++.
T Consensus 118 ~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 118 PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 11234778899999999999999999999999877764
No 326
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.51 E-value=0.00018 Score=44.57 Aligned_cols=35 Identities=37% Similarity=0.759 Sum_probs=31.4
Q ss_pred cccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEc
Q 007283 51 SIYGEHAYPATVARFSPNGEWIASADVSGTVRIWG 85 (609)
Q Consensus 51 ~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd 85 (609)
..+..|...|.+++|+|+++++++++.|+.+++|+
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 6 KTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44567888999999999999999999999999996
No 327
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.44 E-value=0.021 Score=59.59 Aligned_cols=111 Identities=21% Similarity=0.276 Sum_probs=77.6
Q ss_pred cCceeEEeecCCCCeEEEe-----CCCEEEEEeCC-CCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCC
Q 007283 16 RGRGILISGHPKSNSILYT-----NGRSVIILDLS-NPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHND 89 (609)
Q Consensus 16 ~~~~~~~~~~~~~~~l~~~-----~~~~~~i~~~~-~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~ 89 (609)
.+.+..++.||..-.++-. .|+++.||.=. .|.....+.-| +++++|+|..-.||.|=.-|.+-+|...+.
T Consensus 15 davsti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 15 DAVSTISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVH---ATSLCWHPEEFVLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred cccccccccCCCCceeEEEEecCCCCceEEEEecCCCCCccccccee---hhhhccChHHHHHhhccccceeEEEecCCc
Confidence 6778889999988766422 35777777532 23333334444 567999999999999988899999987664
Q ss_pred ceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcC
Q 007283 90 HVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWD 133 (609)
Q Consensus 90 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 133 (609)
+. ......|..+|..+.|||||..|++.. .. ..+.+|..+
T Consensus 92 e~-htv~~th~a~i~~l~wS~~G~~l~t~d-~~--g~v~lwr~d 131 (1416)
T KOG3617|consen 92 ET-HTVVETHPAPIQGLDWSHDGTVLMTLD-NP--GSVHLWRYD 131 (1416)
T ss_pred ee-eeeccCCCCCceeEEecCCCCeEEEcC-CC--ceeEEEEee
Confidence 42 233456788999999999999998753 22 234555554
No 328
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.43 E-value=0.012 Score=45.92 Aligned_cols=91 Identities=21% Similarity=0.276 Sum_probs=61.6
Q ss_pred CEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEE
Q 007283 460 SEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINC 539 (609)
Q Consensus 460 ~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~ 539 (609)
..|++||.|..||+|+-. .+..+ ....+.|.++.-... ..++.+..+|+|-+|+...+....| ....+++
T Consensus 16 ~eLlvGs~D~~IRvf~~~--e~~~E---i~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlWRiK----SK~~~~~ 85 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD--EIVAE---ITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLWRIK----SKNQVTS 85 (111)
T ss_pred ceEEEecCCcEEEEEeCC--cEEEE---EecccceEEEEEcCC-CEEEEEecCCEEEEEeCcceeeeec----cCCCeEE
Confidence 579999999999999743 33211 123567888877666 6689999999999998655544443 1223666
Q ss_pred EEECC---CC-cEEEEEeCCCeEEE
Q 007283 540 LAWSP---NN-SMVATGSLDTCVII 560 (609)
Q Consensus 540 l~~s~---d~-~~l~s~s~D~~v~v 560 (609)
+++.. || .-|++|-.+|.|-+
T Consensus 86 ~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 86 MAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred EEEEcCCCCCceEEEEEecCCeEEe
Confidence 65543 23 36888988887753
No 329
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.42 E-value=0.013 Score=45.74 Aligned_cols=89 Identities=18% Similarity=0.207 Sum_probs=62.6
Q ss_pred CEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEE
Q 007283 504 SMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYG 583 (609)
Q Consensus 504 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~ 583 (609)
..|++||.|..||+|+-. +. +.+ ..-.+.|++|.-... ..++.|..+|+|-+|+-.. .++.++.-|. +.+
T Consensus 16 ~eLlvGs~D~~IRvf~~~--e~-~~E-i~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~---RlWRiKSK~~--~~~ 85 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD--EI-VAE-ITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ---RLWRIKSKNQ--VTS 85 (111)
T ss_pred ceEEEecCCcEEEEEeCC--cE-EEE-EecccceEEEEEcCC-CEEEEEecCCEEEEEeCcc---eeeeeccCCC--eEE
Confidence 689999999999999732 22 222 234667888888876 5578999999999998532 3455555443 677
Q ss_pred EEEcCCC-----eEEEEeCCCcEE
Q 007283 584 LAFTDEH-----SVVSSGEDACVR 602 (609)
Q Consensus 584 ~~~s~~~-----~l~s~s~D~~i~ 602 (609)
+++.|-. -||+|-.+|.|-
T Consensus 86 ~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 86 MAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEEcCCCCCceEEEEEecCCeEE
Confidence 7765322 588999988774
No 330
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.39 E-value=0.17 Score=51.28 Aligned_cols=251 Identities=13% Similarity=0.069 Sum_probs=122.9
Q ss_pred CCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccc-----eeEEEEC
Q 007283 35 NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGR-----IDDLQWS 109 (609)
Q Consensus 35 ~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~-----v~~~~~s 109 (609)
..+.++.+|..+++++-.............+. ++ .+..+..++.+.-.|..+++.+- .+...... .......
T Consensus 128 ~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~-~~-~v~v~~~~g~l~ald~~tG~~~W-~~~~~~~~~~~~~~~sP~v~ 204 (394)
T PRK11138 128 EKGQVYALNAEDGEVAWQTKVAGEALSRPVVS-DG-LVLVHTSNGMLQALNESDGAVKW-TVNLDVPSLTLRGESAPATA 204 (394)
T ss_pred CCCEEEEEECCCCCCcccccCCCceecCCEEE-CC-EEEEECCCCEEEEEEccCCCEee-eecCCCCcccccCCCCCEEE
Confidence 34678888988888754443222111112222 34 44456678888888888877432 22211000 0011111
Q ss_pred CCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCC-------ccEEEEEEee--CCCeEEEEecCCCeEEEEeCCCCce
Q 007283 110 PDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHS-------RRVLSCAFKP--SRPFRIATCGEDFLVNFYEGPPFKF 180 (609)
Q Consensus 110 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-------~~v~~~~~~p--~~~~~i~t~~~d~~i~~~~~~~~~~ 180 (609)
++..++..+++ .+...+.++++.+....-.. .....+.-+| .+.. +..++.++.+...|..+++.
T Consensus 205 -~~~v~~~~~~g----~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~-vy~~~~~g~l~ald~~tG~~ 278 (394)
T PRK11138 205 -FGGAIVGGDNG----RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGV-VYALAYNGNLVALDLRSGQI 278 (394)
T ss_pred -CCEEEEEcCCC----EEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCE-EEEEEcCCeEEEEECCCCCE
Confidence 23222222221 12333444444333221000 0000011111 1233 44556677788888777654
Q ss_pred eeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEe
Q 007283 181 KLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVW 260 (609)
Q Consensus 181 ~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iw 260 (609)
.-... ......+. .++..+..++.++.+..+|..+++.+...... .+ ....+... .+.+++.++.||.+...
T Consensus 279 ~W~~~--~~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-~~-~~~~sp~v--~~g~l~v~~~~G~l~~l 350 (394)
T PRK11138 279 VWKRE--YGSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDL-LH-RLLTAPVL--YNGYLVVGDSEGYLHWI 350 (394)
T ss_pred EEeec--CCCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEccccc-CC-CcccCCEE--ECCEEEEEeCCCEEEEE
Confidence 32221 01111111 24556777888999999999888765443211 11 11112222 25567788899999999
Q ss_pred ecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEe
Q 007283 261 DISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFS 309 (609)
Q Consensus 261 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~ 309 (609)
|... ++.+......... ........++.+++++.+|.++.+.
T Consensus 351 d~~t---G~~~~~~~~~~~~----~~s~P~~~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 351 NRED---GRFVAQQKVDSSG----FLSEPVVADDKLLIQARDGTVYAIT 392 (394)
T ss_pred ECCC---CCEEEEEEcCCCc----ceeCCEEECCEEEEEeCCceEEEEe
Confidence 9763 5555444321111 1111223466788888888877765
No 331
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.39 E-value=0.2 Score=50.87 Aligned_cols=137 Identities=12% Similarity=0.056 Sum_probs=78.8
Q ss_pred CCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceE
Q 007283 459 GSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARIN 538 (609)
Q Consensus 459 g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~ 538 (609)
+..+++++.+|.++.+|..++...-...+ +....+. .++..+..++.++.+...|..+++...+....-.....
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~----~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~ 329 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREY----GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLT 329 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecC----CCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCccc
Confidence 45677778899999999887764322211 1111111 23455666778899999998777654322110011111
Q ss_pred EEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEE-EEEcCCCeEEEEeCCCcEEEEEc
Q 007283 539 CLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYG-LAFTDEHSVVSSGEDACVRVWRL 606 (609)
Q Consensus 539 ~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~-~~~s~~~~l~s~s~D~~i~~W~~ 606 (609)
+..+ .+.+|+.++.||.|.+.|..++. .+..... ....+.+ -.+. +..|+-++.||.+..+++
T Consensus 330 sp~v--~~g~l~v~~~~G~l~~ld~~tG~-~~~~~~~-~~~~~~s~P~~~-~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 330 APVL--YNGYLVVGDSEGYLHWINREDGR-FVAQQKV-DSSGFLSEPVVA-DDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEE--ECCEEEEEeCCCEEEEEECCCCC-EEEEEEc-CCCcceeCCEEE-CCEEEEEeCCceEEEEeC
Confidence 2222 24557788999999999987643 3323222 1222332 2233 456777899999887764
No 332
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.39 E-value=0.045 Score=49.94 Aligned_cols=210 Identities=13% Similarity=0.197 Sum_probs=112.6
Q ss_pred CCEEEEEeCCCCccccc--------cccCCCCcEEEEECCCCCEEEEEeCC-----CcEEEEcCCCCceeeEEEeecccc
Q 007283 36 GRSVIILDLSNPLQVSI--------YGEHAYPATVARFSPNGEWIASADVS-----GTVRIWGAHNDHVLKKEFRVLSGR 102 (609)
Q Consensus 36 ~~~~~i~~~~~~~~~~~--------~~~h~~~v~~~~~sp~g~~las~~~d-----~~i~vWd~~~~~~~~~~~~~~~~~ 102 (609)
|.-..++|.++..+..+ |-||. .|||||++|....+| |.|-|||...+-...-+++.|.-.
T Consensus 90 Gtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiG 163 (366)
T COG3490 90 GTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIG 163 (366)
T ss_pred CceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcC
Confidence 44566788777665433 34554 599999999865554 689999987532222456666656
Q ss_pred eeEEEECCCCCEEEEEECCCCcc----e-----------EEEEEcCCCCeeE--EEe--cCCccEEEEEEeeCCCeEEEE
Q 007283 103 IDDLQWSPDGLRIVACGDGKGKS----L-----------VRAFMWDSGTNVG--EFD--GHSRRVLSCAFKPSRPFRIAT 163 (609)
Q Consensus 103 v~~~~~spdg~~l~~~~~~~~~~----~-----------~~~~~~~~~~~~~--~~~--~h~~~v~~~~~~p~~~~~i~t 163 (609)
.-.+.|.+||+.|+..+.+-..+ . +.+.+-.++..+. ++. .+.-.|..++..+++.. .+.
T Consensus 164 pHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtv-wfg 242 (366)
T COG3490 164 PHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTV-WFG 242 (366)
T ss_pred cceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcE-EEE
Confidence 67889999999888876431110 0 0011101111111 112 23345667777777652 332
Q ss_pred ecCCCeEEEEeCCC----------Cceee----eccCcccceEEEEEcCCCCEEEEEeCC-CcEEEEeCCCCccccccCc
Q 007283 164 CGEDFLVNFYEGPP----------FKFKL----SHRGHSNFVNCVRFSPDGSKFISVSSD-KKGIIYDGKTADKIGELSP 228 (609)
Q Consensus 164 ~~~d~~i~~~~~~~----------~~~~~----~~~~h~~~v~~l~~s~dg~~l~s~~~d-~~i~iwd~~~~~~~~~~~~ 228 (609)
|-+-+.- -|.++ .+... ....-.++|-+++.+.+..+++..+-. +...+||..++.....-..
T Consensus 243 cQy~G~~--~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l 320 (366)
T COG3490 243 CQYRGPR--NDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL 320 (366)
T ss_pred EEeeCCC--ccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc
Confidence 2111100 01111 11000 001123577888888765555555544 4567899999886543211
Q ss_pred CCCCccceEEEEECCCCCeEEEEeCCCcEEEee
Q 007283 229 EDGHKGSVYAVSWSPDGKQVLTASADKSAKVWD 261 (609)
Q Consensus 229 ~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd 261 (609)
..+-.+ -+...-++..+.+|.+.++.
T Consensus 321 -----~daaGv--a~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 321 -----PDAAGV--AAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred -----cccccc--eeccCceEEecCCceEEecc
Confidence 011122 23344466777789988874
No 333
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.39 E-value=0.016 Score=61.18 Aligned_cols=134 Identities=17% Similarity=0.151 Sum_probs=76.8
Q ss_pred eeEEeecCCCCeEEEeC-------C--CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCC-CcEEE-----
Q 007283 19 GILISGHPKSNSILYTN-------G--RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVS-GTVRI----- 83 (609)
Q Consensus 19 ~~~~~~~~~~~~l~~~~-------~--~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d-~~i~v----- 83 (609)
.-..+.+|||+.++|.. + ..+.+.+.....+ ....+. ..+...|+|||+.|++.+.. ..+++
T Consensus 352 vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~-~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~ 428 (591)
T PRK13616 352 ITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAV-QVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPA 428 (591)
T ss_pred cccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcce-eeecCC--CCCCceECCCCCceEEEecCcceEEEeccCC
Confidence 34677899999998875 2 2555666533332 223332 38899999999988877532 22233
Q ss_pred ----E--cCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCC-ee---EEEe-cCCccEEEEE
Q 007283 84 ----W--GAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGT-NV---GEFD-GHSRRVLSCA 152 (609)
Q Consensus 84 ----W--d~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~-~~---~~~~-~h~~~v~~~~ 152 (609)
| +++.++. . . ...+.|..++|||||++++.+.+++ ..+..+..-+.+. .+ ..+. +-...+.+++
T Consensus 429 ~gql~~~~vd~ge~-~-~--~~~g~Issl~wSpDG~RiA~i~~g~-v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~ 503 (591)
T PRK13616 429 TGQLARTPVDASAV-A-S--RVPGPISELQLSRDGVRAAMIIGGK-VYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD 503 (591)
T ss_pred CceEEEEeccCchh-h-h--ccCCCcCeEEECCCCCEEEEEECCE-EEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence 3 2222211 0 0 2345799999999999999887542 1111112212232 11 1122 2223467889
Q ss_pred EeeCCCeE
Q 007283 153 FKPSRPFR 160 (609)
Q Consensus 153 ~~p~~~~~ 160 (609)
|.+++...
T Consensus 504 W~~~~~L~ 511 (591)
T PRK13616 504 WRTGDSLV 511 (591)
T ss_pred EecCCEEE
Confidence 99988743
No 334
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.29 E-value=0.006 Score=63.96 Aligned_cols=182 Identities=15% Similarity=0.189 Sum_probs=118.8
Q ss_pred CeEEEeC-CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEE
Q 007283 29 NSILYTN-GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQ 107 (609)
Q Consensus 29 ~~l~~~~-~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~ 107 (609)
..++.+. -+.++.+|+.+.+..+...-....|+-+ ..+++++.+|+..|+|-|-|..+-+. .+++..|++.|..
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~~~-iht~~aHs~siSD-- 222 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIM--RYNNRNLFCGDTRGTVFLRDPNSFET-IHTFDAHSGSISD-- 222 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeeccCCceEEE--EecCcEEEeecccceEEeecCCcCce-eeeeeccccceee--
Confidence 3344432 3677788888877766554333344444 56789999999999999999987654 3567888887765
Q ss_pred ECCCCCEEEEEECCCCc------ceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCC----C
Q 007283 108 WSPDGLRIVACGDGKGK------SLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGP----P 177 (609)
Q Consensus 108 ~spdg~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~----~ 177 (609)
|+-.|..|++||-..-. ..+++|++..-+.+.-+.-+-++ .-+.|+|.-..++++++..+...+-|.. +
T Consensus 223 fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP 301 (1118)
T KOG1275|consen 223 FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP 301 (1118)
T ss_pred eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCC
Confidence 55568899999843211 23455555432222111112121 3357788877788888888877776521 1
Q ss_pred CceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007283 178 FKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYD 216 (609)
Q Consensus 178 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd 216 (609)
.........-...+..+.++++|+.+|.+..+|.|.+|-
T Consensus 302 ~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 302 PAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 111222223345589999999999999999999999996
No 335
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.21 E-value=0.024 Score=58.55 Aligned_cols=186 Identities=15% Similarity=0.162 Sum_probs=107.9
Q ss_pred ECCCCCEEEE-EeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCC------------CcceEEEEE
Q 007283 65 FSPNGEWIAS-ADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGK------------GKSLVRAFM 131 (609)
Q Consensus 65 ~sp~g~~las-~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~------------~~~~~~~~~ 131 (609)
++|||+.+.. ....+.+-+.|.++-++.. ++.. .+....++++|||+++.++.-+. +...+..+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~-qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn 277 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAW-QVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN 277 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEE-EEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence 4677876643 3345667777877654322 2222 23456789999999998775211 111222333
Q ss_pred cCC-------C-------CeeEEEecC---------------CccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCce--
Q 007283 132 WDS-------G-------TNVGEFDGH---------------SRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKF-- 180 (609)
Q Consensus 132 ~~~-------~-------~~~~~~~~h---------------~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~-- 180 (609)
|.. + ..+..+.+. ......++++||+.++++++..+.++.+.|....+.
T Consensus 278 i~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~ 357 (635)
T PRK02888 278 IARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF 357 (635)
T ss_pred hHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence 321 1 112222222 223456899999999889998899999998766442
Q ss_pred ----------eeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCC------Cc----cccccCc--CCCCccceEE
Q 007283 181 ----------KLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKT------AD----KIGELSP--EDGHKGSVYA 238 (609)
Q Consensus 181 ----------~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~------~~----~~~~~~~--~~~h~~~V~~ 238 (609)
..+..--.+ -...+|.++|..+.|---|..+..|++.+ ++ .+..+.. ..+|...-..
T Consensus 358 ~~~~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g 436 (635)
T PRK02888 358 DGKIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMG 436 (635)
T ss_pred hccCCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCC
Confidence 111111112 24678999999888888899999999765 11 1221111 1244333333
Q ss_pred EEECCCCCeEEEEeC
Q 007283 239 VSWSPDGKQVLTASA 253 (609)
Q Consensus 239 l~~spd~~~l~s~s~ 253 (609)
=.-.|||++|++...
T Consensus 437 ~t~~~dgk~l~~~nk 451 (635)
T PRK02888 437 ETKEADGKWLVSLNK 451 (635)
T ss_pred CcCCCCCCEEEEccc
Confidence 334688999988754
No 336
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.21 E-value=0.091 Score=48.94 Aligned_cols=185 Identities=16% Similarity=0.100 Sum_probs=100.9
Q ss_pred EEEecCCCeEEEEeCCCCceeeeccC--cccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCC-ccceE
Q 007283 161 IATCGEDFLVNFYEGPPFKFKLSHRG--HSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGH-KGSVY 237 (609)
Q Consensus 161 i~t~~~d~~i~~~~~~~~~~~~~~~~--h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~V~ 237 (609)
+.+++.++.+..+|..+++..-.+.. ..... . ..++..++.++.++.+..+|..+++.+......... .....
T Consensus 39 v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~---~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~ 114 (238)
T PF13360_consen 39 VYVASGDGNLYALDAKTGKVLWRFDLPGPISGA---P-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRS 114 (238)
T ss_dssp EEEEETTSEEEEEETTTSEEEEEEECSSCGGSG---E-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB-
T ss_pred EEEEcCCCEEEEEECCCCCEEEEeeccccccce---e-eecccccccccceeeeEecccCCcceeeeecccccccccccc
Confidence 55557888999999988876544432 11111 1 224456777778889999999999987763111100 01122
Q ss_pred EEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCC------ccceEEEEEEcCCeEEEEEcCCcEEEEeCC
Q 007283 238 AVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGG------VDDMLVGCLWQNDFLVIVSLGGTISIFSAN 311 (609)
Q Consensus 238 ~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 311 (609)
......++..++.+..++.|..+|++ .++.+-......... ...........++.+++.+.++.+..++..
T Consensus 115 ~~~~~~~~~~~~~~~~~g~l~~~d~~---tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~ 191 (238)
T PF13360_consen 115 SSSPAVDGDRLYVGTSSGKLVALDPK---TGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLA 191 (238)
T ss_dssp -SEEEEETTEEEEEETCSEEEEEETT---TTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETT
T ss_pred ccCceEecCEEEEEeccCcEEEEecC---CCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECC
Confidence 23333347788888889999999987 355554443322111 111122333344566666666653333554
Q ss_pred CCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCcc
Q 007283 312 DLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIG 357 (609)
Q Consensus 312 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~ 357 (609)
..... .... ...+.... ...+..++.++.++.+..|+..++
T Consensus 192 tg~~~-w~~~--~~~~~~~~--~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 192 TGEKL-WSKP--ISGIYSLP--SVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp TTEEE-EEEC--SS-ECECE--ECCCTEEEEEETTTEEEEEETTTT
T ss_pred CCCEE-EEec--CCCccCCc--eeeCCEEEEEeCCCEEEEEECCCC
Confidence 33211 1111 12222211 123356666668999999987665
No 337
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.17 E-value=0.00071 Score=70.25 Aligned_cols=160 Identities=16% Similarity=0.196 Sum_probs=103.9
Q ss_pred ccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEE
Q 007283 50 VSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRA 129 (609)
Q Consensus 50 ~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~ 129 (609)
.+.|..|...-+|++||-+.+.|+.|+-.|.|+++.+.++.-+ .....|..+|+.+.=|.||..+++.+.
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e-~s~ncH~SavT~vePs~dgs~~Ltsss--------- 1163 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME-ESVNCHQSAVTLVEPSVDGSTQLTSSS--------- 1163 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccc-ccccccccccccccccCCcceeeeecc---------
Confidence 4557788888999999999999999999999999998876532 234566667777666666665554321
Q ss_pred EEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCC-eEEEEeCC-CCceeeeccCcccceEEEEEcCCCCEEEEEe
Q 007283 130 FMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDF-LVNFYEGP-PFKFKLSHRGHSNFVNCVRFSPDGSKFISVS 207 (609)
Q Consensus 130 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~-~i~~~~~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~ 207 (609)
... ...+|+.. .+.....|.+ =.++.|+...+.-+.|+
T Consensus 1164 ------------------------------------~S~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt 1203 (1516)
T KOG1832|consen 1164 ------------------------------------SSSPLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGT 1203 (1516)
T ss_pred ------------------------------------ccCchHHHhccccccCccccccc----cceeehhhhHHHHHhcc
Confidence 111 11234322 1222222322 35677887755555666
Q ss_pred CCCcEEEEeCCCCccccc-cCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeeccc
Q 007283 208 SDKKGIIYDGKTADKIGE-LSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE 264 (609)
Q Consensus 208 ~d~~i~iwd~~~~~~~~~-~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~ 264 (609)
......+||++++..+.+ ++...+.+..-+.+.|+|+..+++- ||. +||++.
T Consensus 1204 ~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln---dGv--LWDvR~ 1256 (1516)
T KOG1832|consen 1204 EADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN---DGV--LWDVRI 1256 (1516)
T ss_pred cccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee---Cce--eeeecc
Confidence 667789999999988766 3322233333478899999988764 553 799863
No 338
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.039 Score=52.64 Aligned_cols=92 Identities=20% Similarity=0.258 Sum_probs=72.2
Q ss_pred EEEEeCCCCceeeeccCcccceEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCC-e
Q 007283 170 VNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGS-KFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGK-Q 247 (609)
Q Consensus 170 i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~-~ 247 (609)
++..+..+++...-+.+|...|..++|+|... ++..++-+..|.|.|.++......+. .| ..+.+++|.-|.. +
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~---a~-~~~wSC~wDlde~h~ 250 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI---AY-NQIWSCCWDLDERHV 250 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee---cc-CCceeeeeccCCcce
Confidence 45555555555555667888999999999977 78889999999999999887766553 34 6899999998765 5
Q ss_pred EEEEeCCCcEEEeecccC
Q 007283 248 VLTASADKSAKVWDISED 265 (609)
Q Consensus 248 l~s~s~d~~i~iwd~~~~ 265 (609)
|..|-..|.|.+||++..
T Consensus 251 IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred eEEeccCceEEEEEccCC
Confidence 666667899999999753
No 339
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.15 E-value=0.11 Score=48.71 Aligned_cols=148 Identities=20% Similarity=0.174 Sum_probs=90.5
Q ss_pred ceeEEeecCCCCeEEEeC----CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEc-CCCCcee
Q 007283 18 RGILISGHPKSNSILYTN----GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWG-AHNDHVL 92 (609)
Q Consensus 18 ~~~~~~~~~~~~~l~~~~----~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd-~~~~~~~ 92 (609)
.....+.+++|+.+++.. +..+++.......... +.+ ..+....|+|+|.+.+....+...+++. ..+++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~-~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV-LTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee-ccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 456888999999887754 3566666654433322 333 3688999999998888877777778884 2333322
Q ss_pred eEEEee--cccceeEEEECCCCCEEEEEECCCCcceEEEE--EcCCCC-e------eEEEecCCccEEEEEEeeCCCeEE
Q 007283 93 KKEFRV--LSGRIDDLQWSPDGLRIVACGDGKGKSLVRAF--MWDSGT-N------VGEFDGHSRRVLSCAFKPSRPFRI 161 (609)
Q Consensus 93 ~~~~~~--~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~--~~~~~~-~------~~~~~~h~~~v~~~~~~p~~~~~i 161 (609)
...... ..+.|..+++||||.+++.+....+...+.+- ..+... . ..........+..++|.+++...+
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 222222 22279999999999999988732222222221 222211 1 111123346789999999988655
Q ss_pred EEecCCC
Q 007283 162 ATCGEDF 168 (609)
Q Consensus 162 ~t~~~d~ 168 (609)
++...+.
T Consensus 182 ~~~~~~~ 188 (253)
T PF10647_consen 182 LGRSAGG 188 (253)
T ss_pred EeCCCCC
Confidence 5555555
No 340
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.14 E-value=0.14 Score=52.31 Aligned_cols=116 Identities=15% Similarity=0.194 Sum_probs=70.8
Q ss_pred cEEEEECCCCCEEEE-EeCCC----cEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcc------eEE
Q 007283 60 ATVARFSPNGEWIAS-ADVSG----TVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKS------LVR 128 (609)
Q Consensus 60 v~~~~~sp~g~~las-~~~d~----~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~------~~~ 128 (609)
+...++||||++||- .+..| ++++.|+.+++.+...+... ....++|.+|++.++...-+.... --+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 446789999999983 34444 69999999987544333221 123399999999888877444322 345
Q ss_pred EEEcCCCCe----eEEEecCCcc--EEEEEEeeCCCeEEEEecCCC---eEEEEeCCC
Q 007283 129 AFMWDSGTN----VGEFDGHSRR--VLSCAFKPSRPFRIATCGEDF---LVNFYEGPP 177 (609)
Q Consensus 129 ~~~~~~~~~----~~~~~~h~~~--v~~~~~~p~~~~~i~t~~~d~---~i~~~~~~~ 177 (609)
++.|..++. ...+.+.... ...+..++++.++++...... .+.+.+...
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 666665543 2344443332 568888999998776654443 344445543
No 341
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.10 E-value=0.26 Score=47.36 Aligned_cols=215 Identities=13% Similarity=0.122 Sum_probs=117.9
Q ss_pred ecCCCCeEEEeC--CCEEEEEeCCCCccccccccCCCCcEEE-EECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeec-
Q 007283 24 GHPKSNSILYTN--GRSVIILDLSNPLQVSIYGEHAYPATVA-RFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVL- 99 (609)
Q Consensus 24 ~~~~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~h~~~v~~~-~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~- 99 (609)
..|+.+.|++.. ++.+.-|+..+++... +.. .+.+.+. .+...|+++++. ..+.+++.+++.. ...+...
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~~-p~~~~~~~~~d~~g~Lv~~~---~g~~~~~~~~~~~-~t~~~~~~ 105 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKKRV-FPS-PGGFSSGALIDAGGRLIACE---HGVRLLDPDTGGK-ITLLAEPE 105 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCceEE-EEC-CCCcccceeecCCCeEEEEc---cccEEEeccCCce-eEEecccc
Confidence 566677677764 5777778776554432 332 2334444 455555555433 3466677654432 1111111
Q ss_pred ----ccceeEEEECCCCCEEEEEEC------CCCcceEEEEEcC-CCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCC
Q 007283 100 ----SGRIDDLQWSPDGLRIVACGD------GKGKSLVRAFMWD-SGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDF 168 (609)
Q Consensus 100 ----~~~v~~~~~spdg~~l~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~ 168 (609)
......+...|||...+..-. ........+|..+ .+.....+.+|-..-+.++|||++...+++=+..+
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~ 185 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN 185 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence 124567888999987776543 1112234556666 44445555555556678999999986555545556
Q ss_pred eEEEEeCCC--C---ce--eeeccCcccceEEEEEcCCCCEEEEEeCCC-cEEEEeCCCCccccccCcCCCCccceEEEE
Q 007283 169 LVNFYEGPP--F---KF--KLSHRGHSNFVNCVRFSPDGSKFISVSSDK-KGIIYDGKTADKIGELSPEDGHKGSVYAVS 240 (609)
Q Consensus 169 ~i~~~~~~~--~---~~--~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~ 240 (609)
.+.-++... + .. ...+....+..=.++...+|.+.+.+..+| .|..|+.. ++.+..+.. +...+++++
T Consensus 186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l---P~~~~t~~~ 261 (307)
T COG3386 186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL---PVKRPTNPA 261 (307)
T ss_pred eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEEC---CCCCCccce
Confidence 665554432 1 11 111112233334456667777665554444 88888887 777665532 225677788
Q ss_pred ECC-CCCeE
Q 007283 241 WSP-DGKQV 248 (609)
Q Consensus 241 ~sp-d~~~l 248 (609)
|-- +.+.|
T Consensus 262 FgG~~~~~L 270 (307)
T COG3386 262 FGGPDLNTL 270 (307)
T ss_pred EeCCCcCEE
Confidence 753 33433
No 342
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.08 E-value=0.018 Score=60.57 Aligned_cols=176 Identities=16% Similarity=0.212 Sum_probs=106.8
Q ss_pred EeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEe
Q 007283 75 ADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFK 154 (609)
Q Consensus 75 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 154 (609)
|+-...+...|+.+.+.. +.......+|.-++-. .+++.+|+..+ .+.+.+....+.+.+++.|++.|..++.
T Consensus 153 Gg~Q~~li~~Dl~~~~e~-r~~~v~a~~v~imR~N---nr~lf~G~t~G--~V~LrD~~s~~~iht~~aHs~siSDfDv- 225 (1118)
T KOG1275|consen 153 GGLQEKLIHIDLNTEKET-RTTNVSASGVTIMRYN---NRNLFCGDTRG--TVFLRDPNSFETIHTFDAHSGSISDFDV- 225 (1118)
T ss_pred cchhhheeeeecccceee-eeeeccCCceEEEEec---CcEEEeecccc--eEEeecCCcCceeeeeeccccceeeeec-
Confidence 333344555565543321 1111222234444432 36666776554 3455666677788999999999986665
Q ss_pred eCCCeEEEEecCC---------CeEEEEeCCCCceeeeccCcccceEEEEEcCC-CCEEEEEeCCCcEEEEeCCCC-cc-
Q 007283 155 PSRPFRIATCGED---------FLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPD-GSKFISVSSDKKGIIYDGKTA-DK- 222 (609)
Q Consensus 155 p~~~~~i~t~~~d---------~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~d-g~~l~s~~~d~~i~iwd~~~~-~~- 222 (609)
.|. .+++||.. .-+++||.+..+......-+.++ .-+.|+|. ...+++++..|...+-|..+- +.
T Consensus 226 -~GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~ 302 (1118)
T KOG1275|consen 226 -QGN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP 302 (1118)
T ss_pred -cCC-eEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCc
Confidence 454 47777754 34678887665443333223222 34678887 447888888888888773221 11
Q ss_pred ccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEee
Q 007283 223 IGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWD 261 (609)
Q Consensus 223 ~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd 261 (609)
...+. ...-...+.++++|+.+..++-+-.+|.|.+|-
T Consensus 303 ~~~~~-v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 303 AGVKM-VNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cceeE-EccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 11110 111234599999999999999999999999996
No 343
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.07 E-value=0.45 Score=48.64 Aligned_cols=238 Identities=14% Similarity=0.062 Sum_probs=117.4
Q ss_pred EEeecCCCCeEEEe---CC---CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCC-----------cEEE
Q 007283 21 LISGHPKSNSILYT---NG---RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSG-----------TVRI 83 (609)
Q Consensus 21 ~~~~~~~~~~l~~~---~~---~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~-----------~i~v 83 (609)
....+|+|+.++|. +| ..+.++|+.+++.+..- -....-..+.|.+||+.|.....+. .|..
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~ 206 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR 206 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-ccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence 56789999999886 34 36889999888654311 0111123489999999887554332 3777
Q ss_pred EcCCCCcee-eEEEeecccc--eeEEEECCCCCEEEEEECCCCc-ceEEEEEcCCC----CeeEEEecCCccEEEEEEee
Q 007283 84 WGAHNDHVL-KKEFRVLSGR--IDDLQWSPDGLRIVACGDGKGK-SLVRAFMWDSG----TNVGEFDGHSRRVLSCAFKP 155 (609)
Q Consensus 84 Wd~~~~~~~-~~~~~~~~~~--v~~~~~spdg~~l~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~h~~~v~~~~~~p 155 (609)
|.+.+.... ...+...... ...+..++|+++|+........ ..+.+.+.+.+ .....+..+...+....-+.
T Consensus 207 ~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~ 286 (414)
T PF02897_consen 207 HKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH 286 (414)
T ss_dssp EETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE
T ss_pred EECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc
Confidence 777665321 1234444433 5678999999988864433333 44555555443 22333444443343333333
Q ss_pred CCCeEEEEe--cCCCeEEEEeCCCCc---eeeeccCccc--ceEEEEEcCCCCEEE-EEeCCC--cEEEEeCCCCccccc
Q 007283 156 SRPFRIATC--GEDFLVNFYEGPPFK---FKLSHRGHSN--FVNCVRFSPDGSKFI-SVSSDK--KGIIYDGKTADKIGE 225 (609)
Q Consensus 156 ~~~~~i~t~--~~d~~i~~~~~~~~~---~~~~~~~h~~--~v~~l~~s~dg~~l~-s~~~d~--~i~iwd~~~~~~~~~ 225 (609)
++.+.+.|- ...+.+.-.+..... ....+..|.. .+..+.. .+..|+ .--.++ .+.+++...+.....
T Consensus 287 ~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~ 364 (414)
T PF02897_consen 287 GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGKESRE 364 (414)
T ss_dssp TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TEEEEE
T ss_pred CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCcEEee
Confidence 444444443 122344444444332 2223444444 3444443 344444 444444 567788772232222
Q ss_pred cCcCCCCccceEEEEECCCCCe-EEEEe-CC--CcEEEeecc
Q 007283 226 LSPEDGHKGSVYAVSWSPDGKQ-VLTAS-AD--KSAKVWDIS 263 (609)
Q Consensus 226 ~~~~~~h~~~V~~l~~spd~~~-l~s~s-~d--~~i~iwd~~ 263 (609)
+.. .-.+.|..+...+++.. .++.+ .- +++.-+|+.
T Consensus 365 ~~~--p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~ 404 (414)
T PF02897_consen 365 IPL--PEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLA 404 (414)
T ss_dssp EES--SSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETT
T ss_pred ecC--CcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECC
Confidence 221 12344666665565542 22322 22 456666665
No 344
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.05 E-value=0.0016 Score=40.01 Aligned_cols=36 Identities=36% Similarity=0.525 Sum_probs=31.3
Q ss_pred eeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007283 181 KLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYD 216 (609)
Q Consensus 181 ~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd 216 (609)
...+..|...|.++.|+|++..+++++.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 344557888999999999999999999999999995
No 345
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.05 E-value=0.37 Score=47.32 Aligned_cols=236 Identities=17% Similarity=0.191 Sum_probs=114.5
Q ss_pred ceeEEeecCCCCeEEEeCCCEEEEEeCCCCcc---c----cccccCCCCcEEEEECCC----CCEEEEEeC------CCc
Q 007283 18 RGILISGHPKSNSILYTNGRSVIILDLSNPLQ---V----SIYGEHAYPATVARFSPN----GEWIASADV------SGT 80 (609)
Q Consensus 18 ~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~---~----~~~~~h~~~v~~~~~sp~----g~~las~~~------d~~ 80 (609)
+|..+++.|||..++.-..+.|.+++. ++.. + .+..........++|+|+ +.+.++-+. +..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~-~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDK-DGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEET-TTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeC-CCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 577999999999988888788888883 3332 1 112233456789999994 544443331 122
Q ss_pred EEE--EcCCCC-------ceeeEEEee---cccceeEEEECCCCCEEEEEECCCC-----------cceEEEEEcCCCC-
Q 007283 81 VRI--WGAHND-------HVLKKEFRV---LSGRIDDLQWSPDGLRIVACGDGKG-----------KSLVRAFMWDSGT- 136 (609)
Q Consensus 81 i~v--Wd~~~~-------~~~~~~~~~---~~~~v~~~~~spdg~~l~~~~~~~~-----------~~~~~~~~~~~~~- 136 (609)
.+| |....+ +.+...... ....-..++|.|||..++++|+... .+++|+- -+ ++
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~-~d-G~~ 159 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRID-PD-GSI 159 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEE-TT-SSB
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEec-cc-CcC
Confidence 233 333222 112122222 2334577999999999999987543 1122221 11 11
Q ss_pred ------------eeEEE-ecCCccEEEEEEeeC-CCeEEEEecCCCeEEEEeCCCC--------c---------------
Q 007283 137 ------------NVGEF-DGHSRRVLSCAFKPS-RPFRIATCGEDFLVNFYEGPPF--------K--------------- 179 (609)
Q Consensus 137 ------------~~~~~-~~h~~~v~~~~~~p~-~~~~i~t~~~d~~i~~~~~~~~--------~--------------- 179 (609)
....+ .++. ....++|+|. +...++--|.+..-.+..+..+ .
T Consensus 160 p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~ 238 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS 238 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred CCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence 00111 1333 2457999998 6543333454432222111100 0
Q ss_pred ------eeeeccCcccceEEEEEcCC-------CCEEEEEeCCCcEEEEeCCCCccccccC-cCCCCccceEEEEECCCC
Q 007283 180 ------FKLSHRGHSNFVNCVRFSPD-------GSKFISVSSDKKGIIYDGKTADKIGELS-PEDGHKGSVYAVSWSPDG 245 (609)
Q Consensus 180 ------~~~~~~~h~~~v~~l~~s~d-------g~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~h~~~V~~l~~spd~ 245 (609)
....+..| ..+..+.|-.. |.+|+..-..+.|....+.....+.... ........+..+++.|||
T Consensus 239 ~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG 317 (331)
T PF07995_consen 239 CPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDG 317 (331)
T ss_dssp -TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTS
T ss_pred CCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCC
Confidence 01112222 34555666532 3344443334555555544332221111 112344579999999999
Q ss_pred CeEEEEeCCCcEE
Q 007283 246 KQVLTASADKSAK 258 (609)
Q Consensus 246 ~~l~s~s~d~~i~ 258 (609)
.+.++-..+|.|.
T Consensus 318 ~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 318 ALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEEE-TTTTEE
T ss_pred eEEEEECCCCeEe
Confidence 9888887788764
No 346
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.079 Score=50.65 Aligned_cols=79 Identities=16% Similarity=0.213 Sum_probs=55.0
Q ss_pred ccccCCCCcEEEEECCCCC-EEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEE
Q 007283 52 IYGEHAYPATVARFSPNGE-WIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAF 130 (609)
Q Consensus 52 ~~~~h~~~v~~~~~sp~g~-~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~ 130 (609)
.+.+|...|..++|||..+ ++..++.+.+|+|-|+++..+.
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v-------------------------------------- 229 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV-------------------------------------- 229 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceee--------------------------------------
Confidence 4456666788888888777 6667888888888888764321
Q ss_pred EcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCC
Q 007283 131 MWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP 177 (609)
Q Consensus 131 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~ 177 (609)
..+..+ ..+++|+|.-+....|..|-..|.+.+||...
T Consensus 230 --------ssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 230 --------SSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred --------eheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 112223 46777888777777788888888888888653
No 347
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.95 E-value=0.14 Score=50.21 Aligned_cols=134 Identities=18% Similarity=0.246 Sum_probs=86.6
Q ss_pred CcEEEEEecCC-----eeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCc-eEEeeecCCCCceEEEEE
Q 007283 469 GKLRVYSIRGD-----TLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSRE-VKLKNMLYHTARINCLAW 542 (609)
Q Consensus 469 g~i~iw~~~~~-----~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~-~~~~~~~~h~~~i~~l~~ 542 (609)
|.|.+|++... .+.. .......++|.+++-- ++.++++ ....+.+|++...+ ............++++..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~-i~~~~~~g~V~ai~~~-~~~lv~~--~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKL-IHSTEVKGPVTAICSF-NGRLVVA--VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEEEECSS-----EEEE-EEEEEESS-EEEEEEE-TTEEEEE--ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEE-EEEEeecCcceEhhhh-CCEEEEe--ecCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 88999999873 3322 2233457889998765 4444443 34789999988776 433333323346666666
Q ss_pred CCCCcEEEEEeCCCeEEEEEcCCCCCcceeE-eccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEccC
Q 007283 543 SPNNSMVATGSLDTCVIIYEIDKPASSRMTI-KGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRLTP 608 (609)
Q Consensus 543 s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~-~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~~~ 608 (609)
. +.+++.|+....|.++..+........+ ......+++++.|. +++.++.+..+|++.++..++
T Consensus 138 ~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 138 F--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp E--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred c--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 4 5589999999999988765422122222 22234568888888 767899999999999998764
No 348
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.89 E-value=0.0086 Score=61.15 Aligned_cols=117 Identities=15% Similarity=0.155 Sum_probs=85.0
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCC-c
Q 007283 491 RGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPAS-S 569 (609)
Q Consensus 491 ~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~-~ 569 (609)
...|.--+++..+++++.|+.-|.+++|+...++.......+....+..+..|++..++|.|+..|.|.|+.+..... .
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 334444456678899999999999999998776543322223445566678899999999999999999998864221 1
Q ss_pred ceeE---eccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEcc
Q 007283 570 RMTI---KGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRLT 607 (609)
Q Consensus 570 ~~~~---~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~~ 607 (609)
.+.+ ...|..+|+++.|+ ++..+.+|-.-|.|-+=.++
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~ 154 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELD 154 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEec
Confidence 1222 12377899999999 78889999988888776554
No 349
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.89 E-value=0.34 Score=47.32 Aligned_cols=237 Identities=20% Similarity=0.227 Sum_probs=109.3
Q ss_pred EeecCCCCeEEEe-CCCEEEEEeCCCCccccccccCCCCcEEEEE--CCCCCEEEEEe---CCC----------------
Q 007283 22 ISGHPKSNSILYT-NGRSVIILDLSNPLQVSIYGEHAYPATVARF--SPNGEWIASAD---VSG---------------- 79 (609)
Q Consensus 22 ~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~--sp~g~~las~~---~d~---------------- 79 (609)
...+|+.+.++|. ++..+.-.|+.+.+...++.-.++-+-...+ +.|+++++-.- .|.
T Consensus 86 ~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~ 165 (386)
T PF14583_consen 86 GFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEAR 165 (386)
T ss_dssp -EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC-
T ss_pred eEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhC
Confidence 4556888889887 5678999999998876777766666644444 56788876432 111
Q ss_pred -cEEEE--cCCCCceeeEEEeecccceeEEEECCC-CCEEEEEECCCCcce-EEEEEcCC-CCeeEEEecCCc--cEEEE
Q 007283 80 -TVRIW--GAHNDHVLKKEFRVLSGRIDDLQWSPD-GLRIVACGDGKGKSL-VRAFMWDS-GTNVGEFDGHSR--RVLSC 151 (609)
Q Consensus 80 -~i~vW--d~~~~~~~~~~~~~~~~~v~~~~~spd-g~~l~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~h~~--~v~~~ 151 (609)
..+|. |+.+++. ..+-.-...+.-+.|||. ...|+.|-.|.-..+ .|+|..+. +.....+..|.. .+..=
T Consensus 166 p~~~i~~idl~tG~~--~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHE 243 (386)
T PF14583_consen 166 PHCRIFTIDLKTGER--KVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHE 243 (386)
T ss_dssp --EEEEEEETTT--E--EEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEE
T ss_pred CCceEEEEECCCCce--eEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccc
Confidence 12333 4444432 122223445678999994 556666766655543 47777764 333333333322 12223
Q ss_pred EEeeCCCeEEEEe----cCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCC----------------c
Q 007283 152 AFKPSRPFRIATC----GEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDK----------------K 211 (609)
Q Consensus 152 ~~~p~~~~~i~t~----~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~----------------~ 211 (609)
-|.|+|..+.... +.+..+.-++..+.+..... ....-..+-.++||++++-=+.|. .
T Consensus 244 fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~--~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~ 321 (386)
T PF14583_consen 244 FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM--EMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPW 321 (386)
T ss_dssp EE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE--EE-SEEEEEE-TTSSEEEEEE-------------------E
T ss_pred cccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE--eCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcE
Confidence 5678887544432 22334444555554433211 112334555678998765433332 3
Q ss_pred EEEEeCCCCccccc------cCcCCCCcc-ceEEEEECCCCCeEEEEe-CCCcEEEeec
Q 007283 212 GIIYDGKTADKIGE------LSPEDGHKG-SVYAVSWSPDGKQVLTAS-ADKSAKVWDI 262 (609)
Q Consensus 212 i~iwd~~~~~~~~~------~~~~~~h~~-~V~~l~~spd~~~l~s~s-~d~~i~iwd~ 262 (609)
+++++++.+..... .....++.. .=....|+|||++++-.| ..|...||-+
T Consensus 322 i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 322 IYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred EEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 44566665543210 001111111 125789999999766544 5676666643
No 350
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.85 E-value=0.13 Score=52.20 Aligned_cols=135 Identities=13% Similarity=0.143 Sum_probs=73.5
Q ss_pred eeEEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEE-cCCCCceeeEEEe
Q 007283 19 GILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIW-GAHNDHVLKKEFR 97 (609)
Q Consensus 19 ~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vW-d~~~~~~~~~~~~ 97 (609)
|..++.+|.|..++-++++.-.||.....+... .+.-...+|.+.++ .|.-....+|+|. +..........+.
T Consensus 35 p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~~~ 108 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA-----FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIKLP 108 (443)
T ss_dssp -SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE-----EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-----S
T ss_pred CeeEEECCCCCEEEEEcCCEEEEEEccCCcccc-----cCceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEcCC
Confidence 568999999999887878888888843322221 23345677888555 6666668899996 4433221111111
Q ss_pred ecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEE
Q 007283 98 VLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFY 173 (609)
Q Consensus 98 ~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~ 173 (609)
..+..+-- |..|...+++ .+.+++|+.++.+..+.-. .|..+.|++++.. +|-.+.+. +.++
T Consensus 109 ---~~~~~If~---G~LL~~~~~~----~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~-val~t~~~-i~il 170 (443)
T PF04053_consen 109 ---FSVEKIFG---GNLLGVKSSD----FICFYDWETGKLIRRIDVS--AVKYVIWSDDGEL-VALVTKDS-IYIL 170 (443)
T ss_dssp ---S-EEEEE----SSSEEEEETT----EEEEE-TTT--EEEEESS---E-EEEEE-TTSSE-EEEE-S-S-EEEE
T ss_pred ---cccceEEc---CcEEEEECCC----CEEEEEhhHcceeeEEecC--CCcEEEEECCCCE-EEEEeCCe-EEEE
Confidence 12333322 7777776654 3789999999888877633 3889999999986 44444443 3443
No 351
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.79 E-value=0.0037 Score=54.95 Aligned_cols=106 Identities=15% Similarity=0.167 Sum_probs=72.9
Q ss_pred CCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCC-Cce
Q 007283 459 GSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHT-ARI 537 (609)
Q Consensus 459 g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~-~~i 537 (609)
+.-+++|+.||.|++|+..........+..+......-|.--.++.+..+++.|+.+|.|++...+. +....+|+ .++
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~-~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV-LGYVGQHNFESG 148 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCce-eeeeccccCCCc
Confidence 3558899999999999764211111122222222233333445677899999999999999876543 33345677 677
Q ss_pred EEEEECCCCcEEEEE--eCCCeEEEEEcCC
Q 007283 538 NCLAWSPNNSMVATG--SLDTCVIIYEIDK 565 (609)
Q Consensus 538 ~~l~~s~d~~~l~s~--s~D~~v~vw~~~~ 565 (609)
..+..+..+++++.+ |.|..++.|++..
T Consensus 149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 149 EELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ceeEEecCCceEEeeccccchhhhhcchhh
Confidence 788888888889988 9999999999863
No 352
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=0.69 Score=46.50 Aligned_cols=199 Identities=17% Similarity=0.156 Sum_probs=125.3
Q ss_pred cEEEEECCCCCEE-EEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCee
Q 007283 60 ATVARFSPNGEWI-ASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNV 138 (609)
Q Consensus 60 v~~~~~sp~g~~l-as~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~ 138 (609)
-..+++++.|..+ +....+..|.+-|..+.+++.....+ .....++++|+++.+.....+.....+.+.+-.+++..
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG--~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG--LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec--cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 3467888988855 45555789999997776544332222 25678999999988777665422234444454455554
Q ss_pred EEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeee----ccCcccceEEEEEcCCCCEEEEEeCC---Cc
Q 007283 139 GEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLS----HRGHSNFVNCVRFSPDGSKFISVSSD---KK 211 (609)
Q Consensus 139 ~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~----~~~h~~~v~~l~~s~dg~~l~s~~~d---~~ 211 (609)
....--..+ ..+++.|++...+++-..+..+.+.+......... ...-...-..+.++|+|.++...-.. +.
T Consensus 154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence 443322233 78999999997666666778888888554433320 01112223567899999966554433 58
Q ss_pred EEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeC-CCcEEEeecc
Q 007283 212 GIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA-DKSAKVWDIS 263 (609)
Q Consensus 212 i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~-d~~i~iwd~~ 263 (609)
+...|..++......... +.. .-..+.++|+|..+..... .+.+.+-|..
T Consensus 233 v~~id~~~~~v~~~~~~~-~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~ 283 (381)
T COG3391 233 VLKIDTATGNVTATDLPV-GSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGA 283 (381)
T ss_pred EEEEeCCCceEEEecccc-ccC-CCCceeECCCCCEEEEEecCCCeEEEEeCC
Confidence 888888877655442111 111 3556899999998887743 4777777754
No 353
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.71 E-value=0.67 Score=47.00 Aligned_cols=174 Identities=18% Similarity=0.205 Sum_probs=83.2
Q ss_pred EEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCce--eeEE---EeecccceeEEEECCCC
Q 007283 38 SVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHV--LKKE---FRVLSGRIDDLQWSPDG 112 (609)
Q Consensus 38 ~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~--~~~~---~~~~~~~v~~~~~spdg 112 (609)
.|.||+..........-.+ +++-++.|+.+.++| .-..||+++++|...... +... .......+....|...|
T Consensus 62 ~I~iys~sG~ll~~i~w~~-~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDS-GRIVGMGWTDDEELV-VVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCCCCEeEEEEECC-CCEEEEEECCCCeEE-EEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 5888887665543322223 789999999976655 455899999999853220 0000 01111122233445566
Q ss_pred CEEEEEECCCCcceEEEEEcCCCCe---eEEEec-----CCc-cEE-EEEEeeCCCeEEEEecCCCeEEEEeCCCCceee
Q 007283 113 LRIVACGDGKGKSLVRAFMWDSGTN---VGEFDG-----HSR-RVL-SCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKL 182 (609)
Q Consensus 113 ~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----h~~-~v~-~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~ 182 (609)
-.+++ ++.+ +..+..++.... ...+.+ |.. ... ...++.+....+.. ..+..+..-+....+.
T Consensus 140 ivvLt-~~~~---~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~-~~g~~i~~i~~~~~~~-- 212 (410)
T PF04841_consen 140 IVVLT-GNNR---FYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILL-ANGETIYIIDENSFKQ-- 212 (410)
T ss_pred EEEEC-CCCe---EEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEE-ecCCEEEEEEcccccc--
Confidence 33333 2211 222222221100 001110 000 000 01233333322222 2223333222111100
Q ss_pred eccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc
Q 007283 183 SHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK 222 (609)
Q Consensus 183 ~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~ 222 (609)
. ...+++..+++||+|+++|.-..+|.+.+.+..-.+.
T Consensus 213 -i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~ 250 (410)
T PF04841_consen 213 -I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEK 250 (410)
T ss_pred -c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccce
Confidence 1 1235799999999999999999999988886443333
No 354
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.70 E-value=0.0022 Score=66.80 Aligned_cols=147 Identities=16% Similarity=0.274 Sum_probs=99.4
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCe--EEEEEccCCce
Q 007283 448 FPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNRE--AIVWDRVSREV 525 (609)
Q Consensus 448 ~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~--v~iwd~~~~~~ 525 (609)
...+|++|+.+.++++.|+..|.|++|++.++.. +....+|..+|+-|.=|.||..+.+.+.-.. .-+|+......
T Consensus 1102 ~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~--e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~ 1179 (1516)
T KOG1832|consen 1102 ALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM--EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGG 1179 (1516)
T ss_pred cceeeEEeecCCceEEeeeccceEEEEEccCccc--cccccccccccccccccCCcceeeeeccccCchHHHhccccccC
Confidence 4578999999999999999999999999998865 3456789999999999999987776554333 45888644211
Q ss_pred EEeeecCCC-CceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEecc---ccCCeEEEEEcC-CCeEEEEeCCCc
Q 007283 526 KLKNMLYHT-ARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGA---HLGGVYGLAFTD-EHSVVSSGEDAC 600 (609)
Q Consensus 526 ~~~~~~~h~-~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~---h~~~v~~~~~s~-~~~l~s~s~D~~ 600 (609)
. .|+ ..-.++.||..-++-+.|..-....+||+.+.. .+...+.+ -+-.-++..|++ +..|+- ||
T Consensus 1180 ----~-~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~-~l~tylt~~~~~~y~~n~a~FsP~D~LIln---dG- 1249 (1516)
T KOG1832|consen 1180 ----P-RHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCS-PLQTYLTDTVTSSYSNNLAHFSPCDTLILN---DG- 1249 (1516)
T ss_pred ----c-cccccccceeehhhhHHHHHhcccccceEEEecccCc-HHHHhcCcchhhhhhccccccCCCcceEee---Cc-
Confidence 1 233 456789999776555566666678999998632 22221221 111225666884 444443 33
Q ss_pred EEEEEcc
Q 007283 601 VRVWRLT 607 (609)
Q Consensus 601 i~~W~~~ 607 (609)
.+||+.
T Consensus 1250 -vLWDvR 1255 (1516)
T KOG1832|consen 1250 -VLWDVR 1255 (1516)
T ss_pred -eeeeec
Confidence 578775
No 355
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.70 E-value=1.2 Score=48.09 Aligned_cols=154 Identities=12% Similarity=0.098 Sum_probs=93.0
Q ss_pred CceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecC
Q 007283 411 PKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKH 490 (609)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h 490 (609)
...+..+.-..+.++..+.+.+++++...+..........+...++.+...++.++.++.+...++....+.. ..-+..
T Consensus 451 ~~Tif~S~i~g~~lvQvTs~~iRl~ss~~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e-~~~~~~ 529 (1096)
T KOG1897|consen 451 EQTIFCSTINGNQLVQVTSNSIRLVSSAGLRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLRE-VSHKEF 529 (1096)
T ss_pred CceEEEEccCCceEEEEecccEEEEcchhhhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccceee-eeehee
Confidence 3334333333344556666677777654444444434445555666666678888878888777776554322 222334
Q ss_pred CCceEEEEECCCC------CEEEEEeCCCeEEEEEccCC-ceEEe-eecC--CCCceEEEEECCCCcEEEEEeCCCeEEE
Q 007283 491 RGAVSVIRYSPDV------SMFASGDVNREAIVWDRVSR-EVKLK-NMLY--HTARINCLAWSPNNSMVATGSLDTCVII 560 (609)
Q Consensus 491 ~~~i~~v~~s~~~------~~l~s~s~d~~v~iwd~~~~-~~~~~-~~~~--h~~~i~~l~~s~d~~~l~s~s~D~~v~v 560 (609)
...|.|++++|-| ++++.|.++..+.+--.... ..... .+.. -...|.-..|-.|..+|.++..||.+.-
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 5789999999763 37889988877665432221 11111 1111 1234556677667889999999999998
Q ss_pred EEcCC
Q 007283 561 YEIDK 565 (609)
Q Consensus 561 w~~~~ 565 (609)
|-++.
T Consensus 610 fv~d~ 614 (1096)
T KOG1897|consen 610 FVLDI 614 (1096)
T ss_pred EEEEc
Confidence 77654
No 356
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.01 Score=59.90 Aligned_cols=92 Identities=12% Similarity=0.114 Sum_probs=69.7
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceE-EEEECCCCCEEEEEeCCCeEEEEEccCCceEEe
Q 007283 450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVS-VIRYSPDVSMFASGDVNREAIVWDRVSREVKLK 528 (609)
Q Consensus 450 ~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~-~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~ 528 (609)
+.-+.++|.-..+|.+..+|.|.+..+.-.. ..++.-|...++ +++|.|||+++|.|-.||+|++-|++++.....
T Consensus 23 i~~~ewnP~~dLiA~~t~~gelli~R~n~qR---lwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 23 IKRIEWNPKMDLIATRTEKGELLIHRLNWQR---LWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred eEEEEEcCccchhheeccCCcEEEEEeccce---eEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 4556788988999999999999988876332 234444555666 999999999999999999999999988765443
Q ss_pred eecCCCCceEEEEECC
Q 007283 529 NMLYHTARINCLAWSP 544 (609)
Q Consensus 529 ~~~~h~~~i~~l~~s~ 544 (609)
........|+++-|+|
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 3334456677777764
No 357
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.67 E-value=0.65 Score=44.54 Aligned_cols=99 Identities=17% Similarity=0.171 Sum_probs=55.9
Q ss_pred CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEE----------eCCCcEEEEcCCCCceeeEEEeeccc-----
Q 007283 37 RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASA----------DVSGTVRIWGAHNDHVLKKEFRVLSG----- 101 (609)
Q Consensus 37 ~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~----------~~d~~i~vWd~~~~~~~~~~~~~~~~----- 101 (609)
.+++++|..+++.+-... .+-.-.+.+||||+.+.++ .....|.+||..+-.... +.....+
T Consensus 17 ~rv~viD~d~~k~lGmi~--~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~-EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMID--TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTG-EIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEE--EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEE-EEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEee--cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccc-eEecCCcchhee
Confidence 378888987766543222 1234457789999988753 334579999998754221 2222211
Q ss_pred --ceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeE
Q 007283 102 --RIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVG 139 (609)
Q Consensus 102 --~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 139 (609)
.....++|.||++++...-... .-+.+.+....+-+.
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa-~SVtVVDl~~~kvv~ 132 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPA-TSVTVVDLAAKKVVG 132 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSS-EEEEEEETTTTEEEE
T ss_pred cccccceEEccCCcEEEEEccCCC-CeEEEEECCCCceee
Confidence 2345789999999987653221 123444544444333
No 358
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.014 Score=58.88 Aligned_cols=74 Identities=16% Similarity=0.345 Sum_probs=60.1
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceE-EEEECCCCcEEEEEeCCCeEEEEEcCCCC
Q 007283 492 GAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARIN-CLAWSPNNSMVATGSLDTCVIIYEIDKPA 567 (609)
Q Consensus 492 ~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~-~l~~s~d~~~l~s~s~D~~v~vw~~~~~~ 567 (609)
-.|.-+.|+|.-.++|.+-.+|.+.+..+. .+. +-....|...++ +++|-|||+.||.|-.||+|++-|+.++.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qR-lwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQR-LWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cce-eEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 356778899999999999999999888764 222 223344777777 99999999999999999999999998653
No 359
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.53 E-value=0.67 Score=42.96 Aligned_cols=198 Identities=12% Similarity=0.202 Sum_probs=92.9
Q ss_pred ccCCCCcEEEEECCCCCEEE-EEeCCCcEEEEcCCCCceeeEEEeec-ccceeEEEECCCCCEEEEEECCCCcceEEEEE
Q 007283 54 GEHAYPATVARFSPNGEWIA-SADVSGTVRIWGAHNDHVLKKEFRVL-SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFM 131 (609)
Q Consensus 54 ~~h~~~v~~~~~sp~g~~la-s~~~d~~i~vWd~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~ 131 (609)
.+-..+++.++|.|+.+.|+ ..+..+.|--.+. +++++++ .... .+....+++..++.++++ .+.. . .+....
T Consensus 18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~-i~l~g~~D~EgI~y~g~~~~vl~-~Er~-~-~L~~~~ 92 (248)
T PF06977_consen 18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRR-IPLDGFGDYEGITYLGNGRYVLS-EERD-Q-RLYIFT 92 (248)
T ss_dssp TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEE-EE-SS-SSEEEEEE-STTEEEEE-ETTT-T-EEEEEE
T ss_pred CCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEE-EeCCCCCCceeEEEECCCEEEEE-EcCC-C-cEEEEE
Confidence 34345699999999866554 5556666655554 3455443 3322 356788899888865554 3211 2 222333
Q ss_pred cCCC-C--ee---EEE-----ecCCccEEEEEEeeCCCeEEEEecCCCeEEEE--eC--CCCceee-e------ccCccc
Q 007283 132 WDSG-T--NV---GEF-----DGHSRRVLSCAFKPSRPFRIATCGEDFLVNFY--EG--PPFKFKL-S------HRGHSN 189 (609)
Q Consensus 132 ~~~~-~--~~---~~~-----~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~--~~--~~~~~~~-~------~~~h~~ 189 (609)
.+.. . .. ..+ ..+...+..++|+|.+...+++.-.+- ..+| +. ....... . ......
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKP-KRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSS-EEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCC-hhhEEEccccCccceeeccccccccccceec
Confidence 3211 1 11 111 134556899999998775555543332 3333 32 1111110 0 112345
Q ss_pred ceEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCccccccCcCCCCc------cceEEEEECCCCCeEEEEeCCCcEEE
Q 007283 190 FVNCVRFSPDGS-KFISVSSDKKGIIYDGKTADKIGELSPEDGHK------GSVYAVSWSPDGKQVLTASADKSAKV 259 (609)
Q Consensus 190 ~v~~l~~s~dg~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~------~~V~~l~~spd~~~l~s~s~d~~i~i 259 (609)
.+..++|+|... +++....+..+.++| ..|+.+..+....+.. ..--.|+|.++|++.++. .-+..+.
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~ 246 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYR 246 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEE
Confidence 688999999854 555566677888888 5565544333222211 245689999998655544 4444333
No 360
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.39 E-value=0.12 Score=55.78 Aligned_cols=99 Identities=13% Similarity=0.184 Sum_probs=65.8
Q ss_pred EEEEeCCCcEEEEEecCCe--eeeeEEEe-cCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceE
Q 007283 462 AIIGSQDGKLRVYSIRGDT--LTEEAVLE-KHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARIN 538 (609)
Q Consensus 462 l~~gs~dg~i~iw~~~~~~--~~~~~~~~-~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~ 538 (609)
-..|-.+..|..||.+-.. +....... ......+|++-+.+| ++|+||.+|.||+||..+.. ....+.+-..+|.
T Consensus 545 tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~-AKT~lp~lG~pI~ 622 (794)
T PF08553_consen 545 TFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKR-AKTALPGLGDPII 622 (794)
T ss_pred eEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchh-hhhcCCCCCCCee
Confidence 4678888999999976322 21100000 123356788777666 67889999999999964422 2223445678999
Q ss_pred EEEECCCCcEEEEEeCCCeEEEEEc
Q 007283 539 CLAWSPNNSMVATGSLDTCVIIYEI 563 (609)
Q Consensus 539 ~l~~s~d~~~l~s~s~D~~v~vw~~ 563 (609)
+|+.+.||+||+. .-+..+.+.+.
T Consensus 623 ~iDvt~DGkwila-Tc~tyLlLi~t 646 (794)
T PF08553_consen 623 GIDVTADGKWILA-TCKTYLLLIDT 646 (794)
T ss_pred EEEecCCCcEEEE-eecceEEEEEE
Confidence 9999999999764 44566777764
No 361
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=0.16 Score=50.61 Aligned_cols=114 Identities=13% Similarity=0.203 Sum_probs=73.6
Q ss_pred CCceeEEEEcCCCCE-------EEEEeCCCcEEEEEecCCeeeeeEEEecCC----CceEEEEECCCCCEEEEEeCCCeE
Q 007283 447 RFPVTASAIAPDGSE-------AIIGSQDGKLRVYSIRGDTLTEEAVLEKHR----GAVSVIRYSPDVSMFASGDVNREA 515 (609)
Q Consensus 447 ~~~~~~~~~sp~g~~-------l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~----~~i~~v~~s~~~~~l~s~s~d~~v 515 (609)
...++.+.+.|+++. -++|-.|..|.-||.+-.......+-++|. .--.|.+-..+ -++|+||.+|.|
T Consensus 375 ~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdI 453 (644)
T KOG2395|consen 375 EDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTES-GYIVVGSLKGDI 453 (644)
T ss_pred cCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCC-ceEEEeecCCcE
Confidence 334666667776653 356778888888987633322222334442 22445554444 478889999999
Q ss_pred EEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEc
Q 007283 516 IVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEI 563 (609)
Q Consensus 516 ~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~ 563 (609)
|+||..... ....+.+....|+.+..+.||++|+ |.-+..+.+-+.
T Consensus 454 RLYdri~~~-AKTAlPgLG~~I~hVdvtadGKwil-~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 454 RLYDRIGRR-AKTALPGLGDAIKHVDVTADGKWIL-ATCKTYLLLIDT 499 (644)
T ss_pred Eeehhhhhh-hhhcccccCCceeeEEeeccCcEEE-EecccEEEEEEE
Confidence 999973332 2234566778999999999999975 445666666654
No 362
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.27 E-value=0.018 Score=61.81 Aligned_cols=103 Identities=15% Similarity=0.231 Sum_probs=65.0
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCC
Q 007283 501 PDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGG 580 (609)
Q Consensus 501 ~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~ 580 (609)
..+..+|.|+..|.+...|..+.-.....-..-+.+|++++|+.||+.++.|-.+|.|.+||+..... .....-|..+
T Consensus 97 ~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~--l~~i~e~~ap 174 (1206)
T KOG2079|consen 97 IVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI--LKVITEHGAP 174 (1206)
T ss_pred eeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc--eeeeeecCCc
Confidence 34556777777777776664332110001112356899999999999999999999999999986432 2222233333
Q ss_pred eEE----EEEcCCCeEEEEeCCCcEEEEEcc
Q 007283 581 VYG----LAFTDEHSVVSSGEDACVRVWRLT 607 (609)
Q Consensus 581 v~~----~~~s~~~~l~s~s~D~~i~~W~~~ 607 (609)
..+ ..++..+.++++-.-|+ +|++.
T Consensus 175 ~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 175 VTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred cceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 333 33445566777766665 77763
No 363
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.27 E-value=0.35 Score=49.20 Aligned_cols=134 Identities=10% Similarity=0.178 Sum_probs=63.9
Q ss_pred CCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCC-----------Ce
Q 007283 69 GEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSG-----------TN 137 (609)
Q Consensus 69 g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~-----------~~ 137 (609)
|.+|...+.+ .|.+||+++++.+. .+. -.+|..+.||++|++++.++++. +.+...+.. ..
T Consensus 117 G~LL~~~~~~-~i~~yDw~~~~~i~-~i~--v~~vk~V~Ws~~g~~val~t~~~----i~il~~~~~~~~~~~~~g~e~~ 188 (443)
T PF04053_consen 117 GNLLGVKSSD-FICFYDWETGKLIR-RID--VSAVKYVIWSDDGELVALVTKDS----IYILKYNLEAVAAIPEEGVEDA 188 (443)
T ss_dssp SSSEEEEETT-EEEEE-TTT--EEE-EES--S-E-EEEEE-TTSSEEEEE-S-S----EEEEEE-HHHHHHBTTTB-GGG
T ss_pred CcEEEEECCC-CEEEEEhhHcceee-EEe--cCCCcEEEEECCCCEEEEEeCCe----EEEEEecchhcccccccCchhc
Confidence 8888876554 89999999877543 232 23489999999999999887543 223333222 01
Q ss_pred eEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 007283 138 VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDG 217 (609)
Q Consensus 138 ~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~ 217 (609)
...+..-...|.+..|.-+ ..+.|... .++++-.........+ ..++.=+.+.|+.+.+.....|+.+..+.+
T Consensus 189 f~~~~E~~~~IkSg~W~~d--~fiYtT~~--~lkYl~~Ge~~~i~~l---d~~~yllgy~~~~~~ly~~Dr~~~v~~~~l 261 (443)
T PF04053_consen 189 FELIHEISERIKSGCWVED--CFIYTTSN--HLKYLVNGETGIIAHL---DKPLYLLGYLPKENRLYLIDRDGNVISYEL 261 (443)
T ss_dssp EEEEEEE-S--SEEEEETT--EEEEE-TT--EEEEEETTEEEEEEE----SS--EEEEEETTTTEEEEE-TT--EEEEE-
T ss_pred eEEEEEecceeEEEEEEcC--EEEEEcCC--eEEEEEcCCcceEEEc---CCceEEEEEEccCCEEEEEECCCCEEEEEE
Confidence 2222222567777888765 33444433 4555432211111111 234445556665556666666666666543
No 364
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.21 E-value=0.23 Score=49.73 Aligned_cols=114 Identities=18% Similarity=0.330 Sum_probs=74.0
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEEecCCe-----------------------------------------eeeeEEEe
Q 007283 450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDT-----------------------------------------LTEEAVLE 488 (609)
Q Consensus 450 ~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~-----------------------------------------~~~~~~~~ 488 (609)
|+.+.++++...+++|...|.|-+|....++ +.....+.
T Consensus 4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~ 83 (395)
T PF08596_consen 4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLD 83 (395)
T ss_dssp EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE-
T ss_pred EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhee
Confidence 5666677777777777777777776653221 11112233
Q ss_pred cCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEee-ecC------CCCceEEEEEC-----CCC---cEEEEEe
Q 007283 489 KHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKN-MLY------HTARINCLAWS-----PNN---SMVATGS 553 (609)
Q Consensus 489 ~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~------h~~~i~~l~~s-----~d~---~~l~s~s 553 (609)
...++|++++.| |--++|.|..+|.+.|.|+++....... +.. ....|+++.|+ .|+ -.|+.|.
T Consensus 84 ~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT 162 (395)
T PF08596_consen 84 AKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT 162 (395)
T ss_dssp --S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred ccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence 347899999997 7779999999999999999877654432 111 23468888887 233 4788999
Q ss_pred CCCeEEEEEcC
Q 007283 554 LDTCVIIYEID 564 (609)
Q Consensus 554 ~D~~v~vw~~~ 564 (609)
..|.+.+|.+-
T Consensus 163 n~G~v~~fkIl 173 (395)
T PF08596_consen 163 NSGNVLTFKIL 173 (395)
T ss_dssp TTSEEEEEEEE
T ss_pred CCCCEEEEEEe
Confidence 99999999884
No 365
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.19 E-value=1.7 Score=44.07 Aligned_cols=62 Identities=18% Similarity=0.210 Sum_probs=41.2
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283 195 RFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS 263 (609)
Q Consensus 195 ~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~ 263 (609)
.++.+....+....++.+.+.+....+. + ...+.+..+++||+++++|.-..+|++.+...+
T Consensus 185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i----~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssD 246 (410)
T PF04841_consen 185 LLSSDRVVEILLANGETIYIIDENSFKQ---I----DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSD 246 (410)
T ss_pred EeecCcceEEEEecCCEEEEEEcccccc---c----cCCCCeEEEEECCCCCEEEEEECCCCEEEEECc
Confidence 3555555555555666666444222111 1 124579999999999999999999999888654
No 366
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.13 E-value=0.47 Score=43.62 Aligned_cols=189 Identities=13% Similarity=0.122 Sum_probs=108.4
Q ss_pred eecCCCCeEEEe-CC-----CEEEEEeCCCCcc-ccccccCCCCcEEEEECCCCCEEEEEeC------------------
Q 007283 23 SGHPKSNSILYT-NG-----RSVIILDLSNPLQ-VSIYGEHAYPATVARFSPNGEWIASADV------------------ 77 (609)
Q Consensus 23 ~~~~~~~~l~~~-~~-----~~~~i~~~~~~~~-~~~~~~h~~~v~~~~~sp~g~~las~~~------------------ 77 (609)
-+||||.+|+.+ |+ +.|=|||...+.+ +-.+..|.=.--.+.+.+||+.|+.+..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM 199 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM 199 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence 378999887655 22 4666899865443 2334455433345678899999987632
Q ss_pred CCcEEEEcCCCCce-eeEEEe--ecccceeEEEECCCCCEEEEEE---CCCCcceEEEEEcCCCCeeEEEe-------cC
Q 007283 78 SGTVRIWGAHNDHV-LKKEFR--VLSGRIDDLQWSPDGLRIVACG---DGKGKSLVRAFMWDSGTNVGEFD-------GH 144 (609)
Q Consensus 78 d~~i~vWd~~~~~~-~~~~~~--~~~~~v~~~~~spdg~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~-------~h 144 (609)
...+-+-|..++.. .+.++. .+.-.|..+...+||..++.+. +..+...+ +-....++.+.-+. .-
T Consensus 200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppL-vg~~~~g~~l~~~~~pee~~~~~ 278 (366)
T COG3490 200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPL-VGHFRKGEPLEFLDLPEEQTAAF 278 (366)
T ss_pred CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcc-eeeccCCCcCcccCCCHHHHHHH
Confidence 12344455444442 222333 2344688899999998888775 22211111 11112222222221 22
Q ss_pred CccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007283 145 SRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYD 216 (609)
Q Consensus 145 ~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd 216 (609)
...|-+++.+.....+.+|........+||..++.....-. . .-+.-..+...-++..+.+|.++.++
T Consensus 279 anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~--l--~daaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 279 ANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAA--L--PDAAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred HhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccc--c--cccccceeccCceEEecCCceEEecc
Confidence 34677888887777778888888889999998876653321 1 11122223333366667778887763
No 367
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.10 E-value=1.6 Score=42.85 Aligned_cols=224 Identities=16% Similarity=0.128 Sum_probs=105.2
Q ss_pred eecCCCCeEEEeC----CCEEEEEeCCCCccccccccCC-CCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEe
Q 007283 23 SGHPKSNSILYTN----GRSVIILDLSNPLQVSIYGEHA-YPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFR 97 (609)
Q Consensus 23 ~~~~~~~~l~~~~----~~~~~i~~~~~~~~~~~~~~h~-~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~ 97 (609)
.+.+||+.|++.. ...+.+.||.+++..+ +..+. ++.....++|+++.|.-...++.++--|+.+.+. ...+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q-LTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~-~~vy~ 119 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ-LTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE-RVVYE 119 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E-EEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEE-CccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE-EEEEE
Confidence 3577887776642 3578889999887655 43332 3333466789999987766667888788887652 22344
Q ss_pred ecccceeEEEE--CCCCCEEEEEECC-------------------CCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeC
Q 007283 98 VLSGRIDDLQW--SPDGLRIVACGDG-------------------KGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPS 156 (609)
Q Consensus 98 ~~~~~v~~~~~--spdg~~l~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~ 156 (609)
....-+....| ..|+.+++.+-.. +....+...+.+++. ...+-....-+..+.|+|.
T Consensus 120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~-~~~v~~~~~wlgH~~fsP~ 198 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE-RKVVFEDTDWLGHVQFSPT 198 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT---EEEEEEESS-EEEEEEETT
T ss_pred CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc-eeEEEecCccccCcccCCC
Confidence 44444444455 4577777665311 011111122222322 2222233455677899999
Q ss_pred CCeEEEEe---cCCCe-EEEEeCC-CCceeeeccCc--ccceEEEEEcCCCCEEEEEe-----CCCcEEEEeCCCCcccc
Q 007283 157 RPFRIATC---GEDFL-VNFYEGP-PFKFKLSHRGH--SNFVNCVRFSPDGSKFISVS-----SDKKGIIYDGKTADKIG 224 (609)
Q Consensus 157 ~~~~i~t~---~~d~~-i~~~~~~-~~~~~~~~~~h--~~~v~~l~~s~dg~~l~s~~-----~d~~i~iwd~~~~~~~~ 224 (609)
++..|+=| ..+.. -++|-+. .+........| ...+..=-|.|||..|.--+ .+..|.-+|+.+++...
T Consensus 199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~ 278 (386)
T PF14583_consen 199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR 278 (386)
T ss_dssp EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE
T ss_pred CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE
Confidence 88766665 34432 3667421 11111122222 23455556899998665432 23345566777765422
Q ss_pred ccCcCCCCccceEEEEECCCCCeEEEEeCC
Q 007283 225 ELSPEDGHKGSVYAVSWSPDGKQVLTASAD 254 (609)
Q Consensus 225 ~~~~~~~h~~~V~~l~~spd~~~l~s~s~d 254 (609)
.. ........--++||++++--+.|
T Consensus 279 ~~-----~~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 279 LM-----EMPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EE-----EE-SEEEEEE-TTSSEEEEEE--
T ss_pred EE-----eCCceeeeEEcCCCCEEEecCCC
Confidence 11 11123455567899988766665
No 368
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.07 E-value=1.2 Score=48.18 Aligned_cols=130 Identities=17% Similarity=0.141 Sum_probs=85.5
Q ss_pred eEEEEEcCCCCeeEEEecCCcc-EEEEEEeeCCC------eEEEEecCCCeEEEEeCCCC--ceeee-c--cCcccceEE
Q 007283 126 LVRAFMWDSGTNVGEFDGHSRR-VLSCAFKPSRP------FRIATCGEDFLVNFYEGPPF--KFKLS-H--RGHSNFVNC 193 (609)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~p~~~------~~i~t~~~d~~i~~~~~~~~--~~~~~-~--~~h~~~v~~ 193 (609)
.+.-.+...++.+..|+-|... |..+ .|+.. ..-..|=.+..+..||.+-. ++... . .......+|
T Consensus 505 ~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~ 582 (794)
T PF08553_consen 505 KLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSC 582 (794)
T ss_pred ceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceE
Confidence 3455677788888888877643 5444 34321 11334445556777775532 22211 1 123456788
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeec
Q 007283 194 VRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDI 262 (609)
Q Consensus 194 l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~ 262 (609)
++-+.+| .||+|+.+|.|++||- .++...+.- .+-..+|.+|..+.||++++..+ +..+-+++.
T Consensus 583 ~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~l--p~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 583 FATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTAL--PGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred EEecCCc-eEEEEeCCCcEEeecc-cchhhhhcC--CCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 8888888 5899999999999993 444444432 35668999999999999987776 567888875
No 369
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.07 E-value=0.33 Score=50.50 Aligned_cols=150 Identities=14% Similarity=0.057 Sum_probs=83.5
Q ss_pred CceeEEeecCCCCeEEEeC-----CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCC---
Q 007283 17 GRGILISGHPKSNSILYTN-----GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHN--- 88 (609)
Q Consensus 17 ~~~~~~~~~~~~~~l~~~~-----~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~--- 88 (609)
|+|-.+.++|+|.+++.++ |..+..-+..+......+.--+ + -++.++|++... .+.+|.+.|..+
T Consensus 235 gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~--i--ea~vkdGK~~~V--~gn~V~VID~~t~~~ 308 (635)
T PRK02888 235 GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR--I--EEAVKAGKFKTI--GGSKVPVVDGRKAAN 308 (635)
T ss_pred CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH--H--HHhhhCCCEEEE--CCCEEEEEECCcccc
Confidence 3445777778887765553 2223233222211111111000 0 134567877654 367899999877
Q ss_pred -CceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCe------------eEEEecCCccEEEEEEee
Q 007283 89 -DHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTN------------VGEFDGHSRRVLSCAFKP 155 (609)
Q Consensus 89 -~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~h~~~v~~~~~~p 155 (609)
+..+...+. -....-.+.+||||+++++.+... ..+.+.++.+.+. .++..- ...-...+|.+
T Consensus 309 ~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS--~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg 384 (635)
T PRK02888 309 AGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLS--PTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDG 384 (635)
T ss_pred CCcceEEEEE-CCCCccceEECCCCCEEEEeCCCC--CcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECC
Confidence 222222222 234567889999999999887433 3466777765331 122111 11123457888
Q ss_pred CCCeEEEEecCCCeEEEEeCCC
Q 007283 156 SRPFRIATCGEDFLVNFYEGPP 177 (609)
Q Consensus 156 ~~~~~i~t~~~d~~i~~~~~~~ 177 (609)
+|. ...|-.-|..+.-|+.+.
T Consensus 385 ~G~-aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 385 RGN-AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCC-EEEeEeecceeEEEehHH
Confidence 875 678888888899998654
No 370
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.02 E-value=0.46 Score=44.59 Aligned_cols=149 Identities=17% Similarity=0.215 Sum_probs=84.1
Q ss_pred ceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEE-eCCCCce
Q 007283 102 RIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFY-EGPPFKF 180 (609)
Q Consensus 102 ~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~-~~~~~~~ 180 (609)
.+...++|+||+.++++..+.+. ..++.+..+....... ....+..-.|++++. +.+....+....++ +...++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~--~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGG--RSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGW-VWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCC--CEEEEEcCCCcceeec-cCCccccccccCCCC-EEEEEcCCCceEEEEecCCCcc
Confidence 57889999999999988722222 2355555544333321 223667778899865 35544444444444 2222221
Q ss_pred e---eeccCcccceEEEEEcCCCCEEEEEe---CCCcEEEEeCC---CC--ccc-cccCcCCCCccceEEEEECCCCCeE
Q 007283 181 K---LSHRGHSNFVNCVRFSPDGSKFISVS---SDKKGIIYDGK---TA--DKI-GELSPEDGHKGSVYAVSWSPDGKQV 248 (609)
Q Consensus 181 ~---~~~~~h~~~v~~l~~s~dg~~l~s~~---~d~~i~iwd~~---~~--~~~-~~~~~~~~h~~~V~~l~~spd~~~l 248 (609)
. .....-...|+.+.+||||.++|... .++.+.+--+. .+ ..+ ............+..+.|.+++.++
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~ 180 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV 180 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence 1 11111112799999999999887766 24555554321 22 111 1111111234578999999999877
Q ss_pred EEEeCC
Q 007283 249 LTASAD 254 (609)
Q Consensus 249 ~s~s~d 254 (609)
+.+...
T Consensus 181 V~~~~~ 186 (253)
T PF10647_consen 181 VLGRSA 186 (253)
T ss_pred EEeCCC
Confidence 766543
No 371
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=0.03 Score=60.19 Aligned_cols=102 Identities=21% Similarity=0.341 Sum_probs=72.7
Q ss_pred CCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCc-
Q 007283 458 DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTAR- 536 (609)
Q Consensus 458 ~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~- 536 (609)
.+..+++|+..|.+..+|+.++ +.....-+.-.++|++++|+.||++++.|-.+|-|.+||...... ++.+..|..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~-l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI-LKVITEHGAPV 175 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc-eeeeeecCCcc
Confidence 4567899999999999888653 221111223457999999999999999999999999999877543 3344444444
Q ss_pred --eEEEEECCCCcEEEEEeCCCeEEEEEc
Q 007283 537 --INCLAWSPNNSMVATGSLDTCVIIYEI 563 (609)
Q Consensus 537 --i~~l~~s~d~~~l~s~s~D~~v~vw~~ 563 (609)
|.-+.+..++..+.++..-|. +|.+
T Consensus 176 t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 444555566777888888885 6754
No 372
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.92 E-value=1.7 Score=41.76 Aligned_cols=141 Identities=16% Similarity=0.171 Sum_probs=76.0
Q ss_pred CcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCC
Q 007283 79 GTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRP 158 (609)
Q Consensus 79 ~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 158 (609)
+.+.|.|.++++.+...-. +-...+..||||+.+.+... +| +
T Consensus 17 ~rv~viD~d~~k~lGmi~~---g~~~~~~~spdgk~~y~a~T--------~~--s------------------------- 58 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT---GFLGNVALSPDGKTIYVAET--------FY--S------------------------- 58 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE---ESSEEEEE-TTSSEEEEEEE--------EE--E-------------------------
T ss_pred ceEEEEECCCCcEEEEeec---ccCCceeECCCCCEEEEEEE--------EE--e-------------------------
Confidence 4677888877765443222 23344678999988776531 11 1
Q ss_pred eEEEEecCCCeEEEEeCCCCceee--eccC-cc----cceEEEEEcCCCCEEEEE--eCCCcEEEEeCCCCccccccCcC
Q 007283 159 FRIATCGEDFLVNFYEGPPFKFKL--SHRG-HS----NFVNCVRFSPDGSKFISV--SSDKKGIIYDGKTADKIGELSPE 229 (609)
Q Consensus 159 ~~i~t~~~d~~i~~~~~~~~~~~~--~~~~-h~----~~v~~l~~s~dg~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~ 229 (609)
|+.=|-..-.+.+||..+.+... .+.+ |+ ......+++.||+++... +-...|-|.|...++.+..+.
T Consensus 59 -R~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~-- 135 (342)
T PF06433_consen 59 -RGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEID-- 135 (342)
T ss_dssp -ETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE--
T ss_pred -ccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeec--
Confidence 11112222345677766654332 2221 11 122345788888876654 445677888888877665442
Q ss_pred CCCccceEEEEECCCCCeEEEEeCCCcEEEeeccc
Q 007283 230 DGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE 264 (609)
Q Consensus 230 ~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~ 264 (609)
-.+ +..+--++ .+.+.+-|.||++.-..+..
T Consensus 136 --~PG-C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~ 166 (342)
T PF06433_consen 136 --TPG-CWLIYPSG-NRGFSMLCGDGSLLTVTLDA 166 (342)
T ss_dssp --GTS-EEEEEEEE-TTEEEEEETTSCEEEEEETS
T ss_pred --CCC-EEEEEecC-CCceEEEecCCceEEEEECC
Confidence 112 22221122 24588888999999888864
No 373
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.74 E-value=0.036 Score=35.95 Aligned_cols=32 Identities=28% Similarity=0.828 Sum_probs=29.0
Q ss_pred CCCceEEEEECCCCcEEEEEeCCCeEEEEEcC
Q 007283 533 HTARINCLAWSPNNSMVATGSLDTCVIIYEID 564 (609)
Q Consensus 533 h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~ 564 (609)
....|.+++|+|...+||.|+.||.|.+++++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 34569999999999999999999999999984
No 374
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.69 E-value=0.048 Score=35.41 Aligned_cols=34 Identities=15% Similarity=0.286 Sum_probs=29.2
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc
Q 007283 188 SNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK 222 (609)
Q Consensus 188 ~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~ 222 (609)
...|.+++|+|...+||.++.+|.|.+|.. +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999987 4443
No 375
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.49 E-value=1.3 Score=43.45 Aligned_cols=152 Identities=14% Similarity=0.233 Sum_probs=87.8
Q ss_pred ccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCe-eeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCC
Q 007283 445 NLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDT-LTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSR 523 (609)
Q Consensus 445 ~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~-~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~ 523 (609)
....++.+++-- +|. ++++. .+.|++|++.... +.....+..+ ..+.++.. .+.+++.|+.-+.+.++.....
T Consensus 86 ~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~-~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~ 159 (321)
T PF03178_consen 86 EVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSP-FYITSLSV--FKNYILVGDAMKSVSLLRYDEE 159 (321)
T ss_dssp EESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BS-SSEEEEEE--ETTEEEEEESSSSEEEEEEETT
T ss_pred eecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecce-EEEEEEec--cccEEEEEEcccCEEEEEEEcc
Confidence 345677777654 344 55544 5899999998877 6544433332 25566554 3569999998888887754332
Q ss_pred c--eEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCC-----Cc-ce-eEecccc-CCeEEE---EEcC--
Q 007283 524 E--VKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPA-----SS-RM-TIKGAHL-GGVYGL---AFTD-- 588 (609)
Q Consensus 524 ~--~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~-----~~-~~-~~~~~h~-~~v~~~---~~s~-- 588 (609)
. ............++++.|-+|++.++.++.+|.+.++..+... .. ++ ....-|. ..|+++ .+.+
T Consensus 160 ~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~ 239 (321)
T PF03178_consen 160 NNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRS 239 (321)
T ss_dssp TE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--S
T ss_pred CCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecC
Confidence 2 2221222345568999998777789999999999999886311 11 22 2222343 346666 2222
Q ss_pred -C-C-----eEEEEeCCCcEE
Q 007283 589 -E-H-----SVVSSGEDACVR 602 (609)
Q Consensus 589 -~-~-----~l~s~s~D~~i~ 602 (609)
+ + .++-++.+|.|-
T Consensus 240 ~~~~~~~~~~i~~~T~~G~Ig 260 (321)
T PF03178_consen 240 GSSESPNRPQILYGTVDGSIG 260 (321)
T ss_dssp SSS-TTEEEEEEEEETTS-EE
T ss_pred CCCcccccceEEEEecCCEEE
Confidence 1 1 366777888885
No 376
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.37 E-value=1.9 Score=38.55 Aligned_cols=139 Identities=13% Similarity=0.105 Sum_probs=76.8
Q ss_pred ceeEEEECCCCCEEEEEECCCCc----ceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEe--C
Q 007283 102 RIDDLQWSPDGLRIVACGDGKGK----SLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYE--G 175 (609)
Q Consensus 102 ~v~~~~~spdg~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~--~ 175 (609)
+...-..+|+|++.+..=.+.+. .-..++.|..+..+..+...-.--..++|+.+.......-+.++.+.-|| .
T Consensus 110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~ 189 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDC 189 (310)
T ss_pred ccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCC
Confidence 34555678999986643222211 00112333322222111111112235677766665566667778887776 4
Q ss_pred CCCce-----eeeccC-----cccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCC
Q 007283 176 PPFKF-----KLSHRG-----HSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD 244 (609)
Q Consensus 176 ~~~~~-----~~~~~~-----h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd 244 (609)
+++.. +..++. |. .--.++..-+|.+.++.-..+++...|+.+|+.+..+.. .+..|++++|---
T Consensus 190 ~tG~~snr~~i~dlrk~~~~e~~-~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eikl---Pt~qitsccFgGk 264 (310)
T KOG4499|consen 190 PTGDLSNRKVIFDLRKSQPFESL-EPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKL---PTPQITSCCFGGK 264 (310)
T ss_pred CcccccCcceeEEeccCCCcCCC-CCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEc---CCCceEEEEecCC
Confidence 44322 222221 11 111234455777777777788999999999998877642 4678999999643
No 377
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.21 E-value=5.9 Score=43.22 Aligned_cols=148 Identities=12% Similarity=0.198 Sum_probs=94.2
Q ss_pred EEcCC-CCEEEEEe----------CCCcEEEEEecC-CeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 007283 454 AIAPD-GSEAIIGS----------QDGKLRVYSIRG-DTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRV 521 (609)
Q Consensus 454 ~~sp~-g~~l~~gs----------~dg~i~iw~~~~-~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~ 521 (609)
-+.-| +.++++|. ..|.|.+|.+.. +.+.. .....-++.+.++.. -+|+++|. -...+++|+..
T Consensus 781 ~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~-v~e~~v~Gav~aL~~-fngkllA~--In~~vrLye~t 856 (1096)
T KOG1897|consen 781 KFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLEL-VAETVVKGAVYALVE-FNGKLLAG--INQSVRLYEWT 856 (1096)
T ss_pred eecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceee-eeeeeeccceeehhh-hCCeEEEe--cCcEEEEEEcc
Confidence 34444 66677764 247889998876 33321 111223455555432 36777775 45578888876
Q ss_pred CCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeE-eccccCCeEEEEEcCCCeEEEEeCCCc
Q 007283 522 SREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTI-KGAHLGGVYGLAFTDEHSVVSSGEDAC 600 (609)
Q Consensus 522 ~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~-~~~h~~~v~~~~~s~~~~l~s~s~D~~ 600 (609)
..+. +.....|..++..+...-.|..++.|+.-+.+.+-...........+ ..-|..+++++.+-++..++-+-++|.
T Consensus 857 ~~~e-Lr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~~gN 935 (1096)
T KOG1897|consen 857 TERE-LRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAENSGN 935 (1096)
T ss_pred ccce-ehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeeccccc
Confidence 5532 22234577788899998899999999999988876654322122222 234677888999887776676777777
Q ss_pred EEEEEc
Q 007283 601 VRVWRL 606 (609)
Q Consensus 601 i~~W~~ 606 (609)
+.+=..
T Consensus 936 lf~v~~ 941 (1096)
T KOG1897|consen 936 LFTVRK 941 (1096)
T ss_pred EEEEEe
Confidence 766544
No 378
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.20 E-value=2.4 Score=38.60 Aligned_cols=106 Identities=11% Similarity=0.041 Sum_probs=65.2
Q ss_pred EcCCCC-EEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEe
Q 007283 196 FSPDGS-KFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTL 274 (609)
Q Consensus 196 ~s~dg~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 274 (609)
..+|.+ +++.|+..+.+.--|.++|+.+.... -..+|.+-+.- -|.+++.|+..|.+++-+.+. +.....+
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~i----lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~t---Gs~~w~f 89 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI----LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKT---GSQIWNF 89 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehh----hCceeeeeeEE-ECCEEEEEEccCcEEEEEecc---hhheeee
Confidence 334433 56677778888888888887654331 12233332222 477899999999999998874 3333222
Q ss_pred ccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCC
Q 007283 275 TPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSAND 312 (609)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 312 (609)
...+.- .....+.++...+.+++.|++.+..+...
T Consensus 90 ~~~~~v---k~~a~~d~~~glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 90 VILETV---KVRAQCDFDGGLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred eehhhh---ccceEEcCCCceEEEecCCCcEEEecccc
Confidence 211110 11234556778899999999988887653
No 379
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.02 E-value=0.015 Score=58.70 Aligned_cols=187 Identities=13% Similarity=0.089 Sum_probs=109.2
Q ss_pred eEEEEecCCCeEEEEeCCCCce--eeeccCcccceEEEEEcCC-CCEEEEEe----CCCcEEEEeCCCCc--cccccCcC
Q 007283 159 FRIATCGEDFLVNFYEGPPFKF--KLSHRGHSNFVNCVRFSPD-GSKFISVS----SDKKGIIYDGKTAD--KIGELSPE 229 (609)
Q Consensus 159 ~~i~t~~~d~~i~~~~~~~~~~--~~~~~~h~~~v~~l~~s~d-g~~l~s~~----~d~~i~iwd~~~~~--~~~~~~~~ 229 (609)
-+++.|..+|.|-+-....... .....+|.++-++++|++- .+.||.|- .|..+.|||..+.- ........
T Consensus 71 cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs 150 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFS 150 (783)
T ss_pred hhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccc
Confidence 4578888888877754332111 1224568888999999885 44666553 35678999977651 11111101
Q ss_pred CCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCC-CCceEEEeccCCCCCccceEEEEE-EcCCeEEEEEcCCcEEE
Q 007283 230 DGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDN-HGKLKKTLTPSGSGGVDDMLVGCL-WQNDFLVIVSLGGTISI 307 (609)
Q Consensus 230 ~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~i~~ 307 (609)
.+.-....+++|-.+.+++.+|...+.+.++|++... ......+-..++ ..+. |.++++ +...+|.+.+
T Consensus 151 ~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG--------~tVdp~~~nY~-cs~~dg~iAi 221 (783)
T KOG1008|consen 151 SSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQG--------ITVDPFSPNYF-CSNSDGDIAI 221 (783)
T ss_pred cccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhccc--------ceecCCCCCce-eccccCceee
Confidence 1123456689999899999999999999999986211 011111100010 1111 234444 4455999999
Q ss_pred EeC-CCCCCCceeeeCC----CCCeEEEEEecCCCCEEEEEecC-CcEEEEec
Q 007283 308 FSA-NDLEKSPLQLSGH----MKNVTALTVLNIDPKVILSSSYD-GLIVKWIQ 354 (609)
Q Consensus 308 ~~~-~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~~t~s~d-g~i~~W~~ 354 (609)
|+. ...+.+..++... .+.+..+++++..+.++++.+.| ++|++.+.
T Consensus 222 wD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 222 WDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI 274 (783)
T ss_pred ccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence 983 2222222222211 22488889987666778887755 67887754
No 380
>PRK13684 Ycf48-like protein; Provisional
Probab=94.96 E-value=4.1 Score=40.07 Aligned_cols=152 Identities=17% Similarity=0.175 Sum_probs=79.9
Q ss_pred CCCcEEEEECCCCCEEEEEeCCCcE-EEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCC
Q 007283 57 AYPATVARFSPNGEWIASADVSGTV-RIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSG 135 (609)
Q Consensus 57 ~~~v~~~~~sp~g~~las~~~d~~i-~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~ 135 (609)
.+.+..+++.|+|.+++.+.. |.+ +.++-. ++.-....+.-...+..+.+.|+++.+++ +.+. .++...-+.+
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~~g-g~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G---~~~~~s~d~G 245 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSR-GNFYSTWEPG-QTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGG---QIRFNDPDDL 245 (334)
T ss_pred cceEEEEEECCCCeEEEEeCC-ceEEEEcCCC-CCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCC---EEEEccCCCC
Confidence 456889999999988887754 433 333211 11111111223456889999999876554 3322 1211111222
Q ss_pred CeeEEEec----CCccEEEEEEeeCCCeEEEEecCCCeEEEE-e-CCCCceeeeccCcccceEEEEEcCCCCEEEEEeCC
Q 007283 136 TNVGEFDG----HSRRVLSCAFKPSRPFRIATCGEDFLVNFY-E-GPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSD 209 (609)
Q Consensus 136 ~~~~~~~~----h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~-~-~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d 209 (609)
..-..... ....+..+.+.|++. +..++.++.+..- | ..+++......+-....+.+.|..+++.++ ++..
T Consensus 246 ~sW~~~~~~~~~~~~~l~~v~~~~~~~--~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~ 322 (334)
T PRK13684 246 ESWSKPIIPEITNGYGYLDLAYRTPGE--IWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQR 322 (334)
T ss_pred CccccccCCccccccceeeEEEcCCCC--EEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCC
Confidence 11111111 123477888988775 3445556654432 2 233333221122224577788877766544 6678
Q ss_pred CcEEEEeC
Q 007283 210 KKGIIYDG 217 (609)
Q Consensus 210 ~~i~iwd~ 217 (609)
|.|.-|+.
T Consensus 323 G~il~~~~ 330 (334)
T PRK13684 323 GVLLRYVG 330 (334)
T ss_pred ceEEEecC
Confidence 88888764
No 381
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.94 E-value=0.071 Score=47.18 Aligned_cols=139 Identities=12% Similarity=0.091 Sum_probs=75.0
Q ss_pred EEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEee-ecCCCCceEEEE
Q 007283 463 IIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKN-MLYHTARINCLA 541 (609)
Q Consensus 463 ~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~h~~~i~~l~ 541 (609)
-.-+.||.|+-+++....+...... -|... ...-.-+..++.|..|+.+++|+.......... ..+-....+-+.
T Consensus 34 ~~~sa~~~v~~~~~~k~k~s~rse~-~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 34 RATSADGLVRERKVRKHKESCRSER-FIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred ccccCCcccccchhhhhhhhhhhhh-hhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 3446677777777654332211110 01111 011123567888999999999975411110000 001111122233
Q ss_pred ECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEecccc-CCeEEEEEc-CCCeEEEE--eCCCcEEEEEcc
Q 007283 542 WSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHL-GGVYGLAFT-DEHSVVSS--GEDACVRVWRLT 607 (609)
Q Consensus 542 ~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~-~~v~~~~~s-~~~~l~s~--s~D~~i~~W~~~ 607 (609)
--.++.+..++..||.|+.|++...+ .....+.|. ..+.....+ .++.+.++ |.|..++.|++.
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k--~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNK--VLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cccccceeEEeccCCceeeeccccCc--eeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 33456678899999999999987533 344445565 344444433 55666665 778888888774
No 382
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.85 E-value=4 Score=39.38 Aligned_cols=134 Identities=13% Similarity=0.043 Sum_probs=68.2
Q ss_pred cEEEEECCCCCEEEEEeC------C---CcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEE
Q 007283 60 ATVARFSPNGEWIASADV------S---GTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAF 130 (609)
Q Consensus 60 v~~~~~sp~g~~las~~~------d---~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~ 130 (609)
-+.....|+|++-++... + ..=.||.+.......+.+..+-..-..++||||++.|..+-.. ...+.-+
T Consensus 113 ~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~--~~~i~r~ 190 (307)
T COG3386 113 PNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP--ANRIHRY 190 (307)
T ss_pred CCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCC--CCeEEEE
Confidence 466788999998875333 1 1225676653222222233322334689999999877765322 2234444
Q ss_pred EcCC--C----Ce-eEEEecCCccEEEEEEeeCCCeEEEEecCC-CeEEEEeCCCCceeeeccCcccceEEEEEc
Q 007283 131 MWDS--G----TN-VGEFDGHSRRVLSCAFKPSRPFRIATCGED-FLVNFYEGPPFKFKLSHRGHSNFVNCVRFS 197 (609)
Q Consensus 131 ~~~~--~----~~-~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d-~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s 197 (609)
.++. + +. ...+..+.+..-.++...+|.. .+++..+ ..+..|+.. ++......-....+++++|-
T Consensus 191 ~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~l-w~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~Fg 263 (307)
T COG3386 191 DLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNL-WVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFG 263 (307)
T ss_pred ecCcccCccCCcceEEEccCCCCCCCceEEeCCCCE-EEecccCCceEEEECCC-CcEEEEEECCCCCCccceEe
Confidence 5542 1 11 1111122233334444555543 3233333 267777765 55555554444567777774
No 383
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.52 E-value=2 Score=44.00 Aligned_cols=149 Identities=13% Similarity=0.240 Sum_probs=87.2
Q ss_pred eecCCCCeEEEeCCCEEEEEeCC--CCccccccc-----cCCCCcEEEEECCCC----CEEEEEeCCCcEEEEcCCCC--
Q 007283 23 SGHPKSNSILYTNGRSVIILDLS--NPLQVSIYG-----EHAYPATVARFSPNG----EWIASADVSGTVRIWGAHND-- 89 (609)
Q Consensus 23 ~~~~~~~~l~~~~~~~~~i~~~~--~~~~~~~~~-----~h~~~v~~~~~sp~g----~~las~~~d~~i~vWd~~~~-- 89 (609)
+.||.- -|+|+.|+.+++.++. +++. .|+ |.-+-|..+.|.|-+ --|...+-.+.|.||.+...
T Consensus 18 AiHPvh-GlaWTDGkqVvLT~L~l~~gE~--kfGds~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~ 94 (671)
T PF15390_consen 18 AIHPVH-GLAWTDGKQVVLTDLQLHNGEP--KFGDSKVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTT 94 (671)
T ss_pred hhcccc-ceEecCCCEEEEEeeeeeCCcc--ccCCccEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCcc
Confidence 468863 3999999999998883 3322 122 222348889999853 24445566789999988621
Q ss_pred ---ceeeEEEeecccc----eeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEE
Q 007283 90 ---HVLKKEFRVLSGR----IDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIA 162 (609)
Q Consensus 90 ---~~~~~~~~~~~~~----v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~ 162 (609)
+.+..+.-...++ -..+.|+|....|+.... .+.++..-.-.|...-...+ ...+.|.+..|.+||...++
T Consensus 95 e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~-~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVV 172 (671)
T PF15390_consen 95 ERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA-RDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVV 172 (671)
T ss_pred ccccceeeeeeeccCCcccCCCcccccCCCceEEEEec-CceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEE
Confidence 2222111122221 257899999877766542 22223222223333323334 44678999999999985444
Q ss_pred EecCCCeEEEEeCC
Q 007283 163 TCGEDFLVNFYEGP 176 (609)
Q Consensus 163 t~~~d~~i~~~~~~ 176 (609)
+.|..=.-++||..
T Consensus 173 AvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 173 AVGSSLHSYIWDSA 186 (671)
T ss_pred EeCCeEEEEEecCc
Confidence 44554445678743
No 384
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.38 E-value=3.9 Score=37.25 Aligned_cols=60 Identities=17% Similarity=0.027 Sum_probs=46.3
Q ss_pred CCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceE-EEEECCCCCeEEEEeCCCcEEEeecc
Q 007283 200 GSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVY-AVSWSPDGKQVLTASADKSAKVWDIS 263 (609)
Q Consensus 200 g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~-~l~~spd~~~l~s~s~d~~i~iwd~~ 263 (609)
|++++.|...+.+++.+.++|+.+..+... +.|. .....+++.++..++.|++.+.-|..
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~----~~vk~~a~~d~~~glIycgshd~~~yalD~~ 123 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVIL----ETVKVRAQCDFDGGLIYCGSHDGNFYALDPK 123 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeeh----hhhccceEEcCCCceEEEecCCCcEEEeccc
Confidence 567899999999999999999776554321 2222 33456789999999999999999875
No 385
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.35 E-value=4.5 Score=37.78 Aligned_cols=159 Identities=9% Similarity=0.084 Sum_probs=88.0
Q ss_pred ccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEE-EeecccceeEEEECCCCCEEEEEECCCCcceEEEEEc
Q 007283 54 GEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKE-FRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMW 132 (609)
Q Consensus 54 ~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 132 (609)
.|-..+|+.+.|+|+.+.|.+..+.+.-.||--.+++.+.+. +++ -+...++++..+|++.++ |-+. ..+..+..
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g-~~DpE~Ieyig~n~fvi~--dER~-~~l~~~~v 157 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-FSDPETIEYIGGNQFVIV--DERD-RALYLFTV 157 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc-cCChhHeEEecCCEEEEE--ehhc-ceEEEEEE
Confidence 345566999999999999988888888888876666655432 222 334566777777765554 2222 22334444
Q ss_pred CCCCee----------EEEecCCccEEEEEEeeCCCeEEEEecCCC-eEEEEeCCCCcee-eeccCc-------ccceEE
Q 007283 133 DSGTNV----------GEFDGHSRRVLSCAFKPSRPFRIATCGEDF-LVNFYEGPPFKFK-LSHRGH-------SNFVNC 193 (609)
Q Consensus 133 ~~~~~~----------~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~-~i~~~~~~~~~~~-~~~~~h-------~~~v~~ 193 (609)
+.++.. ....+-......++|+|.+...++.--.+- .|+.|+..+.... .....+ ...|+.
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg 237 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG 237 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence 433221 111222456788999998876555544442 3334442221111 111111 235778
Q ss_pred EEEcCCCCEEEEEe-CCCcEEEEe
Q 007283 194 VRFSPDGSKFISVS-SDKKGIIYD 216 (609)
Q Consensus 194 l~~s~dg~~l~s~~-~d~~i~iwd 216 (609)
+.|.+....|++-| +++.+.-.|
T Consensus 238 l~~~~~~~~LLVLS~ESr~l~Evd 261 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRLLEVD 261 (316)
T ss_pred ceecCCCCcEEEEecCCceEEEEe
Confidence 88887655444444 444444444
No 386
>PHA02713 hypothetical protein; Provisional
Probab=94.03 E-value=7.1 Score=41.56 Aligned_cols=65 Identities=5% Similarity=0.108 Sum_probs=36.0
Q ss_pred CCCCEEEEEeCC------CcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCC--cEEEeeccc
Q 007283 198 PDGSKFISVSSD------KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADK--SAKVWDISE 264 (609)
Q Consensus 198 ~dg~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~--~i~iwd~~~ 264 (609)
-+|+..+.|+.+ ..+..||+.+.+.+..+.+..........+.+ +++..+.||.++ .+-.||+..
T Consensus 462 ~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 462 HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccc
Confidence 356777777754 23568998872223222222122222223333 678888888887 566677654
No 387
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.87 E-value=1.6 Score=45.94 Aligned_cols=106 Identities=12% Similarity=0.289 Sum_probs=72.5
Q ss_pred EcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEE--CCCCCEEEEEeCCCeEEEEEccCCc--------
Q 007283 455 IAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRY--SPDVSMFASGDVNREAIVWDRVSRE-------- 524 (609)
Q Consensus 455 ~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~--s~~~~~l~s~s~d~~v~iwd~~~~~-------- 524 (609)
-|.-++..++-+.-.++.|||.+...+.....+ ...+.|..++| .|||+.+.+.+..+.|.+|......
T Consensus 37 gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w 115 (631)
T PF12234_consen 37 GSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSW 115 (631)
T ss_pred ecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCccc
Confidence 344455555544455899999988876655555 45678999988 6899999999999999999642111
Q ss_pred eEEee--ecCCC-CceEEEEECCCCcEEEEEeCCCeEEEEEc
Q 007283 525 VKLKN--MLYHT-ARINCLAWSPNNSMVATGSLDTCVIIYEI 563 (609)
Q Consensus 525 ~~~~~--~~~h~-~~i~~l~~s~d~~~l~s~s~D~~v~vw~~ 563 (609)
..++. +..|+ .+|.+..|.+||.+++.+ ++.+.|++-
T Consensus 116 ~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 116 APIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred ceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 01111 22344 679999999999876544 456777763
No 388
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.79 E-value=5.8 Score=37.07 Aligned_cols=115 Identities=14% Similarity=0.161 Sum_probs=81.4
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCce---
Q 007283 449 PVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREV--- 525 (609)
Q Consensus 449 ~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~--- 525 (609)
.++++.++|+.+.|.+-.....--++=...+.+.....+.+. .....|.+..+|++.++--.++++.+..+.....
T Consensus 87 nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~ 165 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-SDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVIS 165 (316)
T ss_pred cccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-CChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEe
Confidence 378899999999887777666666664445555444444442 3346678888999999999999998886544321
Q ss_pred ------EEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcC
Q 007283 526 ------KLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEID 564 (609)
Q Consensus 526 ------~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~ 564 (609)
.+......+.+...++|+|.+..|..+=.-+=+.||.+.
T Consensus 166 ~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 166 AKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred ccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 111111127788999999999999888888888888775
No 389
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.78 E-value=3.4 Score=41.35 Aligned_cols=110 Identities=16% Similarity=0.258 Sum_probs=62.8
Q ss_pred ecCCCccCcCceeEEeecCCCCeEEEeC-------------CCEEEEEeCCC--Ccc--ccccccCCCCcEEEEECCCCC
Q 007283 8 YTCVPSTERGRGILISGHPKSNSILYTN-------------GRSVIILDLSN--PLQ--VSIYGEHAYPATVARFSPNGE 70 (609)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------------~~~~~i~~~~~--~~~--~~~~~~h~~~v~~~~~sp~g~ 70 (609)
++-.|.- ..|+.+++.++|+.++... +.+|++++-.+ ++. ...+...-.....+++.++|
T Consensus 7 ~A~~p~~--~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G- 83 (367)
T TIGR02604 7 FAAEPLL--RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG- 83 (367)
T ss_pred EECCCcc--CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-
Confidence 4444443 5677999999999887642 23676665432 221 22333223356889999999
Q ss_pred EEEEEeCCCcEEEEcCCCC-----c--eeeEEEeec----ccceeEEEECCCCCEEEEEECC
Q 007283 71 WIASADVSGTVRIWGAHND-----H--VLKKEFRVL----SGRIDDLQWSPDGLRIVACGDG 121 (609)
Q Consensus 71 ~las~~~d~~i~vWd~~~~-----~--~~~~~~~~~----~~~v~~~~~spdg~~l~~~~~~ 121 (609)
++++ +.+.-.++.|.+.. + .+...+... ......++|.|||...++.|+.
T Consensus 84 lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~ 144 (367)
T TIGR02604 84 VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNT 144 (367)
T ss_pred EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccC
Confidence 5554 33433334454321 1 111112221 2346789999999988887753
No 390
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.53 E-value=8.3 Score=38.78 Aligned_cols=145 Identities=10% Similarity=0.086 Sum_probs=80.7
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCc-e---EE
Q 007283 452 ASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSRE-V---KL 527 (609)
Q Consensus 452 ~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~-~---~~ 527 (609)
.+..++||.+++.|..-..++-|+-- ... -......-...+.++.+.+++..++++ .++.+.. ....++ . ..
T Consensus 243 ~v~~~~dG~~~~vg~~G~~~~s~d~G-~~~-W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f 318 (398)
T PLN00033 243 TVNRSPDGDYVAVSSRGNFYLTWEPG-QPY-WQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDF 318 (398)
T ss_pred eEEEcCCCCEEEEECCccEEEecCCC-Ccc-eEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccce
Confidence 34567888877776544333344321 110 011122334578999999999988876 5565443 222221 0 11
Q ss_pred eeecCC--CCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEe---ccccCCeEEEEEcCCCeEEEEeCCCcEE
Q 007283 528 KNMLYH--TARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIK---GAHLGGVYGLAFTDEHSVVSSGEDACVR 602 (609)
Q Consensus 528 ~~~~~h--~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~---~~h~~~v~~~~~s~~~~l~s~s~D~~i~ 602 (609)
...... ...++.+.|.+++..++ ++.+|.+.... +.++ -.... ..-....+.+.|.+++.....|.+|.|.
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~~~a-~G~~G~v~~s~-D~G~--tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il 394 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKEAWA-AGGSGILLRST-DGGK--SWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLL 394 (398)
T ss_pred eecccCCCCcceEEEEEcCCCcEEE-EECCCcEEEeC-CCCc--ceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEE
Confidence 212111 23589999998877655 45667666543 2221 11111 1223457899998766677788888887
Q ss_pred EE
Q 007283 603 VW 604 (609)
Q Consensus 603 ~W 604 (609)
-|
T Consensus 395 ~~ 396 (398)
T PLN00033 395 RY 396 (398)
T ss_pred Ee
Confidence 65
No 391
>PHA02713 hypothetical protein; Provisional
Probab=93.26 E-value=1.1 Score=47.51 Aligned_cols=147 Identities=14% Similarity=0.160 Sum_probs=76.5
Q ss_pred CCCCEEEEEeCCC-----cEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCC------------------
Q 007283 457 PDGSEAIIGSQDG-----KLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNR------------------ 513 (609)
Q Consensus 457 p~g~~l~~gs~dg-----~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~------------------ 513 (609)
-+|+..|+|+.++ ++..||..++.......+.........+. -+|...+.|+.++
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCccccccccccccccccccc
Confidence 3577778887764 47778876554332111111111112222 2678888887652
Q ss_pred -----eEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCC------CeEEEEEcCC-CCCcceeEeccccCCe
Q 007283 514 -----EAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLD------TCVIIYEIDK-PASSRMTIKGAHLGGV 581 (609)
Q Consensus 514 -----~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D------~~v~vw~~~~-~~~~~~~~~~~h~~~v 581 (609)
++..||..+.+....... ......+-...-+++..+.|+.+ ..|..||..+ .......... .....
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m-~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~-~~r~~ 505 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNF-WTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE-SRLSA 505 (557)
T ss_pred ccccceEEEECCCCCeEeecCCC-CcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC-ccccc
Confidence 477788777665422111 11122211222367877777754 2467788765 3322222111 11222
Q ss_pred EEEEEcCCCeEEEEeCCC--cEEEEEcc
Q 007283 582 YGLAFTDEHSVVSSGEDA--CVRVWRLT 607 (609)
Q Consensus 582 ~~~~~s~~~~l~s~s~D~--~i~~W~~~ 607 (609)
.+++..++...+.||.|+ ++..+|..
T Consensus 506 ~~~~~~~~~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 506 LHTILHDNTIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred ceeEEECCEEEEEeeecceeehhhcCcc
Confidence 344444778888899888 55555553
No 392
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.03 E-value=1.7 Score=42.90 Aligned_cols=109 Identities=17% Similarity=0.207 Sum_probs=65.1
Q ss_pred CccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCC
Q 007283 232 HKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSAN 311 (609)
Q Consensus 232 h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 311 (609)
..++|.++.||+|.+.||..-.|.+|.+++...+++.. .-..... .-...+.+++|....-++.-.+..+.+|...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l-~~~~~ck---~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~ 140 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL-EYTQECK---TKNANILGFCWTSSTEIAFITDQGIEFYQVL 140 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh-HHHHHhc---cCcceeEEEEEecCeeEEEEecCCeEEEEEc
Confidence 45689999999999999999999999999875432221 1111111 0123356788876644433344446777655
Q ss_pred CCCCCceeeeCCCCCeEEEEEecCCCCEEEEEe
Q 007283 312 DLEKSPLQLSGHMKNVTALTVLNIDPKVILSSS 344 (609)
Q Consensus 312 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s 344 (609)
.........+.|.-+|....+.....-.+.+.+
T Consensus 141 pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 141 PEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred hhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 443333444567777776666644333333333
No 393
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.96 E-value=5 Score=40.17 Aligned_cols=102 Identities=15% Similarity=0.194 Sum_probs=56.3
Q ss_pred eeEEEEcCCCCEEEEEe-----------CCC-cEEEEEecCC--eeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeE
Q 007283 450 VTASAIAPDGSEAIIGS-----------QDG-KLRVYSIRGD--TLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREA 515 (609)
Q Consensus 450 ~~~~~~sp~g~~l~~gs-----------~dg-~i~iw~~~~~--~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v 515 (609)
...+++.++|+++++-. ..+ .|.+++-..+ ......++.........+++.++| ++++ +...-.
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~~i~ 93 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPPDIL 93 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCCeEE
Confidence 56678899999877753 223 6777754322 222222333333456888999999 5544 344323
Q ss_pred EEEEccC------C-ceEEeeecC----CCCceEEEEECCCCcEEEEEe
Q 007283 516 IVWDRVS------R-EVKLKNMLY----HTARINCLAWSPNNSMVATGS 553 (609)
Q Consensus 516 ~iwd~~~------~-~~~~~~~~~----h~~~i~~l~~s~d~~~l~s~s 553 (609)
++.|... . +..+..+.. +......++|.|||++.++-+
T Consensus 94 ~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 94 FLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 3334322 1 111121211 245588999999998766544
No 394
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.50 E-value=3.2 Score=41.81 Aligned_cols=66 Identities=15% Similarity=0.130 Sum_probs=47.9
Q ss_pred EEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007283 148 VLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYD 216 (609)
Q Consensus 148 v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd 216 (609)
..|.+-..+| .||+|+.+|.|++||-.-......+.+-..+|..+..+.||++|+ |..+..+.+-+
T Consensus 433 Fsc~aTT~sG--~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil-~Tc~tyLlLi~ 498 (644)
T KOG2395|consen 433 FSCFATTESG--YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWIL-ATCKTYLLLID 498 (644)
T ss_pred cceeeecCCc--eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEE-EecccEEEEEE
Confidence 3344444444 499999999999999643344445778888999999999999765 55666666655
No 395
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=92.46 E-value=0.44 Score=29.44 Aligned_cols=29 Identities=21% Similarity=0.480 Sum_probs=20.9
Q ss_pred CCCCcEEEEECCCCCEEE-EEeCC--CcEEEE
Q 007283 56 HAYPATVARFSPNGEWIA-SADVS--GTVRIW 84 (609)
Q Consensus 56 h~~~v~~~~~sp~g~~la-s~~~d--~~i~vW 84 (609)
..+.....+|||||++|+ ++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 345678899999999998 45556 777776
No 396
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=92.41 E-value=4.5 Score=40.64 Aligned_cols=113 Identities=15% Similarity=0.244 Sum_probs=71.2
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEccCCceE------------------------------------------Eeee
Q 007283 493 AVSVIRYSPDVSMFASGDVNREAIVWDRVSREVK------------------------------------------LKNM 530 (609)
Q Consensus 493 ~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~------------------------------------------~~~~ 530 (609)
.|+.++|+++..-|++|...|.|.+|.....+.. ...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 4788999999999999999999988853221100 0011
Q ss_pred cCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeE--e------ccccCCeEEEEEc-----CCC----eEE
Q 007283 531 LYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTI--K------GAHLGGVYGLAFT-----DEH----SVV 593 (609)
Q Consensus 531 ~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~--~------~~h~~~v~~~~~s-----~~~----~l~ 593 (609)
...++.|++++.| |=-++|.|..+|.+.|-|+..+. .+.. . ...+..|+++.|+ ++. +++
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPa--vI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPA--VIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTE--EEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCe--EEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 1235789999998 66789999999999999996432 2111 1 1123457788774 222 366
Q ss_pred EEeCCCcEEEEEccC
Q 007283 594 SSGEDACVRVWRLTP 608 (609)
Q Consensus 594 s~s~D~~i~~W~~~~ 608 (609)
.|-..|.+.+|++-|
T Consensus 160 vGTn~G~v~~fkIlp 174 (395)
T PF08596_consen 160 VGTNSGNVLTFKILP 174 (395)
T ss_dssp EEETTSEEEEEEEEE
T ss_pred EEeCCCCEEEEEEec
Confidence 777889999998854
No 397
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.47 E-value=25 Score=38.50 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=15.5
Q ss_pred EEEEecCCCCEEEEEecCCcEE
Q 007283 329 ALTVLNIDPKVILSSSYDGLIV 350 (609)
Q Consensus 329 ~~~~~~~~~~~~~t~s~dg~i~ 350 (609)
++.+.+..+..++-+..+|++.
T Consensus 289 ~i~~l~~~p~~~via~~~G~l~ 310 (717)
T PF10168_consen 289 SILCLPSLPPVLVIATSNGKLY 310 (717)
T ss_pred eEEEecCCCCEEEEEecCCeEE
Confidence 3444455677888888888876
No 398
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.28 E-value=18 Score=36.47 Aligned_cols=147 Identities=18% Similarity=0.272 Sum_probs=80.1
Q ss_pred cEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCC---
Q 007283 60 ATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGT--- 136 (609)
Q Consensus 60 v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~--- 136 (609)
...+..++||++++.+....-.+-||--.. .=...-......+.++.|.+||..+++...+. + ++.-+.+.
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~-~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~---l--~~S~d~G~~~~ 314 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQP-YWQPHNRASARRIQNMGWRADGGLWLLTRGGG---L--YVSKGTGLTEE 314 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCc-ceEEecCCCccceeeeeEcCCCCEEEEeCCce---E--EEecCCCCccc
Confidence 344567899999888866554555653211 00011112244688999999998777654432 1 22222222
Q ss_pred --eeEEEec--CCccEEEEEEeeCCCeEEEEecCCCeEEEEe--CCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCC
Q 007283 137 --NVGEFDG--HSRRVLSCAFKPSRPFRIATCGEDFLVNFYE--GPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDK 210 (609)
Q Consensus 137 --~~~~~~~--h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~--~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~ 210 (609)
......- ....+..+.|.+++. +..+|.++.+.... ..+++....-.+-...++.+.|.++++-++ .+.+|
T Consensus 315 ~~~f~~~~~~~~~~~l~~v~~~~d~~--~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~-~G~~G 391 (398)
T PLN00033 315 DFDFEEADIKSRGFGILDVGYRSKKE--AWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFV-LGNDG 391 (398)
T ss_pred ccceeecccCCCCcceEEEEEcCCCc--EEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEE-EeCCc
Confidence 1121111 123488888988775 44445566555443 234333322122334577899988776555 55677
Q ss_pred cEEEE
Q 007283 211 KGIIY 215 (609)
Q Consensus 211 ~i~iw 215 (609)
.|.-|
T Consensus 392 ~il~~ 396 (398)
T PLN00033 392 VLLRY 396 (398)
T ss_pred EEEEe
Confidence 76655
No 399
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=91.28 E-value=9.6 Score=40.44 Aligned_cols=103 Identities=20% Similarity=0.322 Sum_probs=68.0
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEEC--CCCcEEEEEeCCCeEEEEEcCC-----
Q 007283 493 AVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWS--PNNSMVATGSLDTCVIIYEIDK----- 565 (609)
Q Consensus 493 ~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s--~d~~~l~s~s~D~~v~vw~~~~----- 565 (609)
.+.-+.-|.-++..++.+.-.++.|||...............+.|.+++|. ||++.+.+-+....|.++--.+
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 344555566666666666667899999887776555544567889999995 7899999999999999985321
Q ss_pred --CCCc---ceeEecccc-CCeEEEEEc-CCCeEEEEe
Q 007283 566 --PASS---RMTIKGAHL-GGVYGLAFT-DEHSVVSSG 596 (609)
Q Consensus 566 --~~~~---~~~~~~~h~-~~v~~~~~s-~~~~l~s~s 596 (609)
+... .+.+ ..|+ ..|.+..|. ++..++.+|
T Consensus 111 ~~p~w~~i~~i~i-~~~T~h~Igds~Wl~~G~LvV~sG 147 (631)
T PF12234_consen 111 KGPSWAPIRKIDI-SSHTPHPIGDSIWLKDGTLVVGSG 147 (631)
T ss_pred CCcccceeEEEEe-ecCCCCCccceeEecCCeEEEEeC
Confidence 1100 1112 2344 468888888 555554444
No 400
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=91.27 E-value=0.058 Score=54.76 Aligned_cols=144 Identities=17% Similarity=0.269 Sum_probs=92.1
Q ss_pred CCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCC-CCEEEEEe----CCCeEEEEEccCCceEEe---e
Q 007283 458 DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPD-VSMFASGD----VNREAIVWDRVSREVKLK---N 529 (609)
Q Consensus 458 ~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~-~~~l~s~s----~d~~v~iwd~~~~~~~~~---~ 529 (609)
|...+++|..+|.|-+-.++...-....+..+|....++++|++- ...||.|- .|..+.|||+.+.-...+ .
T Consensus 69 d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~ 148 (783)
T KOG1008|consen 69 DRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPL 148 (783)
T ss_pred chhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccc
Confidence 445789999999999988765443333456778889999999875 45566552 456689999866411000 1
Q ss_pred ecC-CCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEcC--CCeEEEEeCCCcEEEEE
Q 007283 530 MLY-HTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTD--EHSVVSSGEDACVRVWR 605 (609)
Q Consensus 530 ~~~-h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~l~s~s~D~~i~~W~ 605 (609)
+.. ......+++|-.|.+++.+|..-..+.++|+.........+. +..+..+..++ .+++.+- .|+.|-+||
T Consensus 149 fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn---Tk~vqG~tVdp~~~nY~cs~-~dg~iAiwD 223 (783)
T KOG1008|consen 149 FSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN---TKYVQGITVDPFSPNYFCSN-SDGDIAIWD 223 (783)
T ss_pred cccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh---hhhcccceecCCCCCceecc-ccCceeecc
Confidence 111 334566888989999999999999999999863221111211 11222333332 2455544 499999998
No 401
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=90.26 E-value=26 Score=36.68 Aligned_cols=104 Identities=12% Similarity=0.067 Sum_probs=57.9
Q ss_pred EEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEE-----------------EeCCCeEEEEEccCC
Q 007283 461 EAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFAS-----------------GDVNREAIVWDRVSR 523 (609)
Q Consensus 461 ~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s-----------------~s~d~~v~iwd~~~~ 523 (609)
.+++++.+|.++.+|.+++...-..... ...++.+| +..++. ...++.+.-.|..++
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~-----~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG 376 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEV-----EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG 376 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEee-----ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCC
Confidence 5777888999999998887654322221 11123344 222221 123566777777766
Q ss_pred ceEEeeecC-CC------Cce--EEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeE
Q 007283 524 EVKLKNMLY-HT------ARI--NCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTI 573 (609)
Q Consensus 524 ~~~~~~~~~-h~------~~i--~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~ 573 (609)
+...+.-.. +. ... ..+.. .+..|+.++.||.|..+|..++. .+...
T Consensus 377 ~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~-~lW~~ 432 (488)
T cd00216 377 KVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGK-ELWKF 432 (488)
T ss_pred cEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCc-eeeEE
Confidence 654432211 00 011 11222 46778889999999999987754 44443
No 402
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=89.60 E-value=30 Score=36.95 Aligned_cols=211 Identities=18% Similarity=0.082 Sum_probs=92.9
Q ss_pred CEEEEEeCCCCcccccccc-CCCCcEEEEECCCCCEEEEEeCC-C-----cEEEEcCCCCceeeEEEeecccceeEEEEC
Q 007283 37 RSVIILDLSNPLQVSIYGE-HAYPATVARFSPNGEWIASADVS-G-----TVRIWGAHNDHVLKKEFRVLSGRIDDLQWS 109 (609)
Q Consensus 37 ~~~~i~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~las~~~d-~-----~i~vWd~~~~~~~~~~~~~~~~~v~~~~~s 109 (609)
..+..||..++.......- ++-...++++ -+|.+.++|+.| | ++-.+|....+ -........+-..+...
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~-~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~--W~~~a~M~~~R~~~~v~ 377 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAV-LNGKLYVVGGYDSGSDRLSSVERYDPRTNQ--WTPVAPMNTKRSDFGVA 377 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEE-ECCEEEEEccccCCCcccceEEEecCCCCc--eeccCCccCccccceeE
Confidence 3566788776644322111 1111223333 355667788777 3 45666665543 11111122111111111
Q ss_pred C-CCCEEEEEECCCCcceEEEEEcCCCCeeEEEec-CCccEEEEEEeeCCCeEEEEecCCC------eEEEEeCCCCcee
Q 007283 110 P-DGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDG-HSRRVLSCAFKPSRPFRIATCGEDF------LVNFYEGPPFKFK 181 (609)
Q Consensus 110 p-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~i~t~~~d~------~i~~~~~~~~~~~ 181 (609)
. +|...+..|.+.....-.+-.++..+......+ ........+.-.-+..+.+.||.++ .+..||..+.+..
T Consensus 378 ~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~ 457 (571)
T KOG4441|consen 378 VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWT 457 (571)
T ss_pred EECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCcee
Confidence 1 454444444332222223444444333333222 2223333333333445678888664 4567776554443
Q ss_pred ee--ccCcccceEEEEEcCCCCEEEEEeCCCc-----EEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCC
Q 007283 182 LS--HRGHSNFVNCVRFSPDGSKFISVSSDKK-----GIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASAD 254 (609)
Q Consensus 182 ~~--~~~h~~~v~~l~~s~dg~~l~s~~~d~~-----i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d 254 (609)
.. +..-..... ++. -++...+.|+.|+. +..||+.+.+... +.+.......+....+ +++..+.|+.|
T Consensus 458 ~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~-v~~m~~~rs~~g~~~~--~~~ly~vGG~~ 532 (571)
T KOG4441|consen 458 LIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTM-VAPMTSPRSAVGVVVL--GGKLYAVGGFD 532 (571)
T ss_pred ecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeE-cccCccccccccEEEE--CCEEEEEeccc
Confidence 22 211111111 222 25667788887763 6678877655322 1111111222222222 45666777755
Q ss_pred C
Q 007283 255 K 255 (609)
Q Consensus 255 ~ 255 (609)
+
T Consensus 533 ~ 533 (571)
T KOG4441|consen 533 G 533 (571)
T ss_pred C
Confidence 4
No 403
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=89.44 E-value=9 Score=38.23 Aligned_cols=105 Identities=14% Similarity=0.137 Sum_probs=51.1
Q ss_pred eCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECC--CCCEEEEE-eCCCeEEEEE-ccCCceEEeeec----------
Q 007283 466 SQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSP--DVSMFASG-DVNREAIVWD-RVSREVKLKNML---------- 531 (609)
Q Consensus 466 s~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~--~~~~l~s~-s~d~~v~iwd-~~~~~~~~~~~~---------- 531 (609)
..-.+|++||+...++....-+......+..|.|.. +..+-.+| -...+|..|- ...++...+...
T Consensus 219 ~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~ 298 (461)
T PF05694_consen 219 KYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGW 298 (461)
T ss_dssp -S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS
T ss_pred cccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcc
Confidence 345789999999887754444443334566788854 44433332 2344444442 233333221100
Q ss_pred -C---------CCCceEEEEECCCCcEEE-EEeCCCeEEEEEcCCCCCcc
Q 007283 532 -Y---------HTARINCLAWSPNNSMVA-TGSLDTCVIIYEIDKPASSR 570 (609)
Q Consensus 532 -~---------h~~~i~~l~~s~d~~~l~-s~s~D~~v~vw~~~~~~~~~ 570 (609)
. -..-|+.+..|.|.++|. +.-.+|.|+.||+..+...+
T Consensus 299 ~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pk 348 (461)
T PF05694_consen 299 ILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPK 348 (461)
T ss_dssp ---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-E
T ss_pred cccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCc
Confidence 0 023489999999999875 55689999999998655433
No 404
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.23 E-value=25 Score=37.56 Aligned_cols=107 Identities=20% Similarity=0.343 Sum_probs=66.8
Q ss_pred ecCCCccCcCceeEEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCC
Q 007283 8 YTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAH 87 (609)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~ 87 (609)
|+|.|+. -||++.-+|....-+|..-..+.||+.+.....+..-.|. .+..+.|+.+..+|. ...||++.|++.-
T Consensus 38 fa~Ap~g---GpIAV~r~p~~~~~~~~a~~~I~If~~sG~lL~~~~w~~~-~lI~mgWs~~eeLI~-v~k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 38 FACAPFG---GPIAVTRSPSKLVPLYSARPYIRIFNISGQLLGRILWKHG-ELIGMGWSDDEELIC-VQKDGTVHVYGLL 112 (829)
T ss_pred EEecccC---CceEEEecccccccccccceeEEEEeccccchHHHHhcCC-CeeeecccCCceEEE-EeccceEEEeecc
Confidence 5677764 6789998885443345334578899987655544444444 678899998887665 5689999999886
Q ss_pred CCceee--EEEeecccceeEEEECCCCCEEEEEE
Q 007283 88 NDHVLK--KEFRVLSGRIDDLQWSPDGLRIVACG 119 (609)
Q Consensus 88 ~~~~~~--~~~~~~~~~v~~~~~spdg~~l~~~~ 119 (609)
...... .-+......|..+.|...|-.+++.+
T Consensus 113 ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~ 146 (829)
T KOG2280|consen 113 GEFIESNSVGFESQMSDIVECRFFHNGVAVLTVS 146 (829)
T ss_pred hhhhcccccccccccCceeEEEEecCceEEEecC
Confidence 432211 00112233466666666775555543
No 405
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.04 E-value=12 Score=38.01 Aligned_cols=92 Identities=15% Similarity=0.256 Sum_probs=51.7
Q ss_pred cEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccccc
Q 007283 147 RVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGEL 226 (609)
Q Consensus 147 ~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~ 226 (609)
.|..+..+|.|.. ++-.|.+|.+.++-...+.....+...+..|+|=.|.-+.+++ + -
T Consensus 105 eV~~vl~s~~GS~-VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~f-t--------------------s 162 (741)
T KOG4460|consen 105 EVYQVLLSPTGSH-VALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFF-T--------------------S 162 (741)
T ss_pred EEEEEEecCCCce-EEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceee-c--------------------c
Confidence 4677888899986 5556667766655422221111222222334443333222211 1 1
Q ss_pred CcCCCCccceEEEEECCCC---CeEEEEeCCCcEEEeeccc
Q 007283 227 SPEDGHKGSVYAVSWSPDG---KQVLTASADKSAKVWDISE 264 (609)
Q Consensus 227 ~~~~~h~~~V~~l~~spd~---~~l~s~s~d~~i~iwd~~~ 264 (609)
...-.+..++|+|+. ..|..-+.|..+|+||++.
T Consensus 163 ----s~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 163 ----STSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSE 199 (741)
T ss_pred ----CCceeeeeccccCCccCCceEEEEecCcEEEEEecCC
Confidence 111246678999975 4666777899999999874
No 406
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.03 E-value=6.9 Score=43.48 Aligned_cols=148 Identities=15% Similarity=0.151 Sum_probs=85.4
Q ss_pred ceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCe-----eEEEecC------CccEEEEEEeeCCCeEEEEecCCCeE
Q 007283 102 RIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTN-----VGEFDGH------SRRVLSCAFKPSRPFRIATCGEDFLV 170 (609)
Q Consensus 102 ~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~h------~~~v~~~~~~p~~~~~i~t~~~d~~i 170 (609)
++..+...+|+...++.-... ...+..++...-.. -.-+..| .....++.|.|.=+...+.+..|..|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsn-g~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSN-GEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccCCceEEEEEecC-CceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 455566667776655554333 23444555542110 1111111 23345667777655567778888877
Q ss_pred EEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--ccccccCcCCCCccceEEEEECCCCCeE
Q 007283 171 NFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTA--DKIGELSPEDGHKGSVYAVSWSPDGKQV 248 (609)
Q Consensus 171 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~h~~~V~~l~~spd~~~l 248 (609)
.+..............-...++|++|+|.|+.++.|-..|++.=|...-. ..+...... ....|.+++|-....++
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~--e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVE--ENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcC--CCcceeEEEEecceeEE
Confidence 77643221111111123456899999999999999999999887765433 223222211 25789999998776666
Q ss_pred EEEe
Q 007283 249 LTAS 252 (609)
Q Consensus 249 ~s~s 252 (609)
+.-+
T Consensus 259 vvy~ 262 (1405)
T KOG3630|consen 259 VVYG 262 (1405)
T ss_pred EEec
Confidence 6543
No 407
>PRK10115 protease 2; Provisional
Probab=88.47 E-value=43 Score=36.76 Aligned_cols=236 Identities=7% Similarity=-0.061 Sum_probs=109.9
Q ss_pred EEeecCCCCeEEEeC---C---CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCC------CcEEEEcCCC
Q 007283 21 LISGHPKSNSILYTN---G---RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVS------GTVRIWGAHN 88 (609)
Q Consensus 21 ~~~~~~~~~~l~~~~---~---~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d------~~i~vWd~~~ 88 (609)
.+..+|||+.|+|.. | ..+.+.|+.++..+...- .+.-..++|+|||+.|+-...+ ..|..+++.+
T Consensus 131 ~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i--~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt 208 (686)
T PRK10115 131 GMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL--DNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGT 208 (686)
T ss_pred EEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc--cCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCC
Confidence 456899999999873 3 268889998776322111 1112458999999877644332 2566677776
Q ss_pred Cc-eeeEEEeeccccee-EEEECCCCCEEEEEECCCCcceEEEEEcC--CCCeeEEEecCCcc-EEEEEEeeCCCeEEEE
Q 007283 89 DH-VLKKEFRVLSGRID-DLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRR-VLSCAFKPSRPFRIAT 163 (609)
Q Consensus 89 ~~-~~~~~~~~~~~~v~-~~~~spdg~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~-v~~~~~~p~~~~~i~t 163 (609)
+. .-...+....+... ....+.|+++++..........+.+++-+ .+.. ..+..+... ...+. +..+.+.+.+
T Consensus 209 ~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~ly~~t 286 (686)
T PRK10115 209 PASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEP-FVFLPRRKDHEYSLD-HYQHRFYLRS 286 (686)
T ss_pred ChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCc-eEEEECCCCCEEEEE-eCCCEEEEEE
Confidence 52 11122333333333 33345588877754433333333343322 2221 222222222 22222 3334433433
Q ss_pred ec--CCCeEEEEeCC-CCceeeeccCcc-cceEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CccccccCcCCCCccceEE
Q 007283 164 CG--EDFLVNFYEGP-PFKFKLSHRGHS-NFVNCVRFSPDGSKFISVSSDKKGIIYDGKT-ADKIGELSPEDGHKGSVYA 238 (609)
Q Consensus 164 ~~--~d~~i~~~~~~-~~~~~~~~~~h~-~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~h~~~V~~ 238 (609)
-. ....+...+.. +.+....+.... ..|..+.+..+ .++++...++.-.++-... +..+..+.. .....+..
T Consensus 287 n~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-~l~~~~~~~g~~~l~~~~~~~~~~~~l~~--~~~~~~~~ 363 (686)
T PRK10115 287 NRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD-WLVVEERQRGLTSLRQINRKTREVIGIAF--DDPAYVTW 363 (686)
T ss_pred cCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC-EEEEEEEeCCEEEEEEEcCCCCceEEecC--CCCceEee
Confidence 21 12223222332 222222222222 36777777733 4556666677665553322 222333210 11222333
Q ss_pred EEEC--CCC-CeEEEEeC---CCcEEEeecc
Q 007283 239 VSWS--PDG-KQVLTASA---DKSAKVWDIS 263 (609)
Q Consensus 239 l~~s--pd~-~~l~s~s~---d~~i~iwd~~ 263 (609)
+.++ +++ .++++.+. -+.+..+|+.
T Consensus 364 ~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~ 394 (686)
T PRK10115 364 IAYNPEPETSRLRYGYSSMTTPDTLFELDMD 394 (686)
T ss_pred ecccCCCCCceEEEEEecCCCCCEEEEEECC
Confidence 3444 333 34444433 2566677765
No 408
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.43 E-value=8.8 Score=38.10 Aligned_cols=98 Identities=15% Similarity=0.243 Sum_probs=66.4
Q ss_pred cCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEe---eecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCC
Q 007283 489 KHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLK---NMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDK 565 (609)
Q Consensus 489 ~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~---~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~ 565 (609)
.-+|+|.++.||+|.+.+|+--.|.++-+.++...+..+. ..+..+..|....|+.+ .-+|--+..| +.+|.+..
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence 4567999999999999999999999999999754432221 12234556889999865 5566555554 88888765
Q ss_pred CCCcceeEeccccCCeEEEEEcCC
Q 007283 566 PASSRMTIKGAHLGGVYGLAFTDE 589 (609)
Q Consensus 566 ~~~~~~~~~~~h~~~v~~~~~s~~ 589 (609)
++.. +.....|...|.=..|..+
T Consensus 142 ekrs-lRlVks~~~nvnWy~yc~e 164 (657)
T KOG2377|consen 142 EKRS-LRLVKSHNLNVNWYMYCPE 164 (657)
T ss_pred hhhh-hhhhhhcccCccEEEEccc
Confidence 4422 2223447777766666633
No 409
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.35 E-value=3.2 Score=45.89 Aligned_cols=144 Identities=13% Similarity=0.111 Sum_probs=83.2
Q ss_pred CceeEEEEcCCCCEEEE--EeCCCcEEEEEecCCeeee---eEEEecC------CCceEEEEECCCCC-EEEEEeCCCeE
Q 007283 448 FPVTASAIAPDGSEAII--GSQDGKLRVYSIRGDTLTE---EAVLEKH------RGAVSVIRYSPDVS-MFASGDVNREA 515 (609)
Q Consensus 448 ~~~~~~~~sp~g~~l~~--gs~dg~i~iw~~~~~~~~~---~~~~~~h------~~~i~~v~~s~~~~-~l~s~s~d~~v 515 (609)
.++.-.++.+|+...++ .+.+-.|..||+..-.... ..-+..| .....++.|+|.-. -.|+...|+.+
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 44555666777665433 3333467889885322110 1112222 33456788888753 34556678888
Q ss_pred EEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEec---cccCCeEEEEEc-CCCe
Q 007283 516 IVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKG---AHLGGVYGLAFT-DEHS 591 (609)
Q Consensus 516 ~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~---~h~~~v~~~~~s-~~~~ 591 (609)
++.-+........ -.......+|++|||.|++++.|-..|++.-|....+. +..+.+ -.-.+|.+|.|. ...+
T Consensus 181 ~V~~~~~~~~~v~-s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~lei--k~~ip~Pp~~e~yrvl~v~Wl~t~ef 257 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVT-SFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEI--KSEIPEPPVEENYRVLSVTWLSTQEF 257 (1405)
T ss_pred hhhhhhhhhhhhc-ccCcccceeeEEeccccceeeEecCCCeEEEeecccce--eecccCCCcCCCcceeEEEEecceeE
Confidence 7765322111111 11234568999999999999999999999998754321 111111 013578888887 5555
Q ss_pred EEE
Q 007283 592 VVS 594 (609)
Q Consensus 592 l~s 594 (609)
++.
T Consensus 258 lvv 260 (1405)
T KOG3630|consen 258 LVV 260 (1405)
T ss_pred EEE
Confidence 543
No 410
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=87.99 E-value=18 Score=35.63 Aligned_cols=104 Identities=17% Similarity=0.247 Sum_probs=56.0
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEEecCCee-eeeE----EEecCCCceEEEEECCC----CCEEEEEeCC--------
Q 007283 450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTL-TEEA----VLEKHRGAVSVIRYSPD----VSMFASGDVN-------- 512 (609)
Q Consensus 450 ~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~-~~~~----~~~~h~~~i~~v~~s~~----~~~l~s~s~d-------- 512 (609)
.+.+++.|||+.+++ -+.|.|++++ ..+.. .... +..........++++|+ +.+.++-+..
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 567899999987665 5699999998 33433 1111 11233457889999995 4444444421
Q ss_pred CeEEEEEccCC-------ceEEeeec---CCCCceEEEEECCCCcEEEEEeCC
Q 007283 513 REAIVWDRVSR-------EVKLKNML---YHTARINCLAWSPNNSMVATGSLD 555 (609)
Q Consensus 513 ~~v~iwd~~~~-------~~~~~~~~---~h~~~i~~l~~s~d~~~l~s~s~D 555 (609)
..|.-|..... +..+..+. ...+.-..|+|.|||++.++.+..
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~ 134 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG 134 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence 23333333222 11111111 133456679999999876665433
No 411
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=87.76 E-value=18 Score=33.37 Aligned_cols=141 Identities=20% Similarity=0.273 Sum_probs=72.6
Q ss_pred EEEcCCCCceeeEEEee-cccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCC------ccEEEEEEe
Q 007283 82 RIWGAHNDHVLKKEFRV-LSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHS------RRVLSCAFK 154 (609)
Q Consensus 82 ~vWd~~~~~~~~~~~~~-~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------~~v~~~~~~ 154 (609)
-+||..+.+.. .+.. .+--+.+-+|-|||+.|.+.|+..+..-+|++.-........+.... +-=.+...-
T Consensus 49 ~~yD~~tn~~r--pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 49 VEYDPNTNTFR--PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEecCCCcEE--eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 57999887632 1222 22345566788999999888876655556665432200001111111 111123345
Q ss_pred eCCCeEEEEecCC-CeEEEEeCCC--C-ceeeeccC------cccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccc
Q 007283 155 PSRPFRIATCGED-FLVNFYEGPP--F-KFKLSHRG------HSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIG 224 (609)
Q Consensus 155 p~~~~~i~t~~~d-~~i~~~~~~~--~-~~~~~~~~------h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~ 224 (609)
|||.. |+.||.. -...+|.... . .....+.. ....---+...|||++|+.+..+ -.|||..+.+.+.
T Consensus 127 ~DG~v-lIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~ 203 (243)
T PF07250_consen 127 PDGRV-LIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVR 203 (243)
T ss_pred CCCCE-EEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEe
Confidence 78875 5555544 4455554311 1 11111111 11122356778999988887754 4566877776555
Q ss_pred ccC
Q 007283 225 ELS 227 (609)
Q Consensus 225 ~~~ 227 (609)
.+.
T Consensus 204 ~lP 206 (243)
T PF07250_consen 204 TLP 206 (243)
T ss_pred eCC
Confidence 553
No 412
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=87.01 E-value=2.5 Score=26.68 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=25.0
Q ss_pred ceEEEEEcCCC---CEEEEEeCCCcEEEEeCCC
Q 007283 190 FVNCVRFSPDG---SKFISVSSDKKGIIYDGKT 219 (609)
Q Consensus 190 ~v~~l~~s~dg---~~l~s~~~d~~i~iwd~~~ 219 (609)
.+.++.|+|+. .+|+.+-.-+.+-|+|.++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 57899999864 4888888889999999875
No 413
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=86.92 E-value=2.7 Score=26.51 Aligned_cols=31 Identities=26% Similarity=0.414 Sum_probs=25.9
Q ss_pred CceEEEEECCCC---CEEEEEeCCCeEEEEEccC
Q 007283 492 GAVSVIRYSPDV---SMFASGDVNREAIVWDRVS 522 (609)
Q Consensus 492 ~~i~~v~~s~~~---~~l~s~s~d~~v~iwd~~~ 522 (609)
|.|.++.|||+. .+|+-+-.-+.+.++|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 478999999864 4888888889999999764
No 414
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=86.55 E-value=1.3 Score=47.42 Aligned_cols=58 Identities=26% Similarity=0.410 Sum_probs=37.6
Q ss_pred CeEEEe-CCCEEEEEeCCCCccccccccCCCCcEEEE-----------ECCCCCEEEEEeCCCcEEEEcCC
Q 007283 29 NSILYT-NGRSVIILDLSNPLQVSIYGEHAYPATVAR-----------FSPNGEWIASADVSGTVRIWGAH 87 (609)
Q Consensus 29 ~~l~~~-~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~-----------~sp~g~~las~~~d~~i~vWd~~ 87 (609)
.++.|. .|..+.+.....-.+ ..+.+|...++.++ +||||+.+|++..||.++.|.+.
T Consensus 196 ~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 196 VYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred ceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 334443 234444444333222 45667877666654 48999999999999999999775
No 415
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=86.29 E-value=1.2 Score=47.53 Aligned_cols=106 Identities=13% Similarity=0.084 Sum_probs=62.5
Q ss_pred ECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEE-----------EECCCCcEEEEEeCCCeEEEEEcCCCC
Q 007283 499 YSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCL-----------AWSPNNSMVATGSLDTCVIIYEIDKPA 567 (609)
Q Consensus 499 ~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l-----------~~s~d~~~l~s~s~D~~v~vw~~~~~~ 567 (609)
|-++..++..+..++++++.+..+... +.+..|..+++.+ ..||||+.+|.++.||.+++|.+...+
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g 268 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITG 268 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeec
Confidence 445667888888888887665433222 2234566554432 369999999999999999999875322
Q ss_pred C--cc-eeEecccc-CCeEEEEEcCC----------CeEEEEe-CCCcEEEEEc
Q 007283 568 S--SR-MTIKGAHL-GGVYGLAFTDE----------HSVVSSG-EDACVRVWRL 606 (609)
Q Consensus 568 ~--~~-~~~~~~h~-~~v~~~~~s~~----------~~l~s~s-~D~~i~~W~~ 606 (609)
. .+ +.....|. +.--|..|.+. .++|+++ ..+-+++|.-
T Consensus 269 ~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~ 322 (1283)
T KOG1916|consen 269 KIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE 322 (1283)
T ss_pred cccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence 0 11 11122344 22233335432 1355544 5777899964
No 416
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=86.19 E-value=70 Score=36.76 Aligned_cols=63 Identities=24% Similarity=0.384 Sum_probs=35.7
Q ss_pred EEEEEcCCCCEEEEE------------eCCCcEEEEeCCCCccccc-------cC-----cCCCCccceEEEEECCCCCe
Q 007283 192 NCVRFSPDGSKFISV------------SSDKKGIIYDGKTADKIGE-------LS-----PEDGHKGSVYAVSWSPDGKQ 247 (609)
Q Consensus 192 ~~l~~s~dg~~l~s~------------~~d~~i~iwd~~~~~~~~~-------~~-----~~~~h~~~V~~l~~spd~~~ 247 (609)
.+++++++|.+.++= +.||+|.+.-.....|-.. ++ ...+|-....+++.+|||..
T Consensus 596 r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v 675 (1899)
T KOG4659|consen 596 RDIAVGTDGALYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDV 675 (1899)
T ss_pred hceeecCCceEEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcE
Confidence 678999999766553 3455555553222111110 00 11245566788889999887
Q ss_pred EEEEeCC
Q 007283 248 VLTASAD 254 (609)
Q Consensus 248 l~s~s~d 254 (609)
.+.-+..
T Consensus 676 ~IAD~gN 682 (1899)
T KOG4659|consen 676 IIADSGN 682 (1899)
T ss_pred EEecCCc
Confidence 6665443
No 417
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.15 E-value=5.3 Score=36.42 Aligned_cols=66 Identities=15% Similarity=0.096 Sum_probs=49.6
Q ss_pred ECCCCCEEEEEeCCCeEEEEEccCCceEEee------ec-------CCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCC
Q 007283 499 YSPDVSMFASGDVNREAIVWDRVSREVKLKN------ML-------YHTARINCLAWSPNNSMVATGSLDTCVIIYEIDK 565 (609)
Q Consensus 499 ~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~------~~-------~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~ 565 (609)
+..++.++++-..+|.+++||+.+.+..++. +. .....|+.+.++.+|.-|++-+ +|....|+.+-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4457888999999999999999887654432 21 3557799999999998777655 46778888654
No 418
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.98 E-value=4 Score=37.25 Aligned_cols=57 Identities=18% Similarity=0.350 Sum_probs=37.2
Q ss_pred EECCCCCEEEEEeCCCcEEEEcCCCCceeeEE------Ee-------ecccceeEEEECCCCCEEEEEEC
Q 007283 64 RFSPNGEWIASADVSGTVRIWGAHNDHVLKKE------FR-------VLSGRIDDLQWSPDGLRIVACGD 120 (609)
Q Consensus 64 ~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~------~~-------~~~~~v~~~~~spdg~~l~~~~~ 120 (609)
.+..++++|+.-..+|.+.+||+.+.+..... +. .....|..+..+.+|.-+++..+
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn 86 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN 86 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC
Confidence 35678999999999999999999987643222 11 12234555666666655555544
No 419
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=85.61 E-value=8.7 Score=40.90 Aligned_cols=140 Identities=16% Similarity=0.163 Sum_probs=74.3
Q ss_pred CCCEEEEEeCCC-----cEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCC------eEEEEEccCCceE
Q 007283 458 DGSEAIIGSQDG-----KLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNR------EAIVWDRVSREVK 526 (609)
Q Consensus 458 ~g~~l~~gs~dg-----~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~------~v~iwd~~~~~~~ 526 (609)
+|...|+|+.|| ++..||..++.......+.........+ .-+|...+.|+.|+ ++..||..+....
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~--~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~ 457 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVA--VLGGKLYIIGGGDGSSNCLNSVECYDPETNTWT 457 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEE--EECCEEEEEcCcCCCccccceEEEEcCCCCcee
Confidence 678888998887 4667776655443222222111222222 23788888888554 4568887776654
Q ss_pred Eeeec-CCCCceEEEEECCCCcEEEEEeCCC-----eEEEEEcCCCCCcceeEeccccCCeEEEEEcCCCeEEEEeCCCc
Q 007283 527 LKNML-YHTARINCLAWSPNNSMVATGSLDT-----CVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDAC 600 (609)
Q Consensus 527 ~~~~~-~h~~~i~~l~~s~d~~~l~s~s~D~-----~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~D~~ 600 (609)
..... ...... .++. -++++.+.|+.|+ +|..||..+.+...+.... +...-..++-.++...+.||.|+.
T Consensus 458 ~~~~M~~~R~~~-g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~-~~rs~~g~~~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 458 LIAPMNTRRSGF-GVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT-SPRSAVGVVVLGGKLYAVGGFDGN 534 (571)
T ss_pred ecCCcccccccc-eEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc-cccccccEEEECCEEEEEecccCc
Confidence 32211 111111 2222 2788888888887 3777886543322111111 122222233335566777887765
Q ss_pred EE
Q 007283 601 VR 602 (609)
Q Consensus 601 i~ 602 (609)
-.
T Consensus 535 ~~ 536 (571)
T KOG4441|consen 535 NN 536 (571)
T ss_pred cc
Confidence 43
No 420
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=85.58 E-value=7.9 Score=41.49 Aligned_cols=105 Identities=10% Similarity=0.101 Sum_probs=71.1
Q ss_pred CCCEEEEEeCCCcEEEEEecCCe------------------eeeeEEEecCCCceEEEEEC--CCCCEEEEEeCCCeEEE
Q 007283 458 DGSEAIIGSQDGKLRVYSIRGDT------------------LTEEAVLEKHRGAVSVIRYS--PDVSMFASGDVNREAIV 517 (609)
Q Consensus 458 ~g~~l~~gs~dg~i~iw~~~~~~------------------~~~~~~~~~h~~~i~~v~~s--~~~~~l~s~s~d~~v~i 517 (609)
+.+.|+++..||.|.+|.++.-. ..+. ........++.+++. ...+++|+++....|.+
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~-f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPF-FHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCC-eEeecCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 45567888889999998652100 0001 112234578999998 88899999999999988
Q ss_pred EEccCCce--EEeeecCCCCceEEEEECCCC---c---EEEEEeCCCeEEEEEc
Q 007283 518 WDRVSREV--KLKNMLYHTARINCLAWSPNN---S---MVATGSLDTCVIIYEI 563 (609)
Q Consensus 518 wd~~~~~~--~~~~~~~h~~~i~~l~~s~d~---~---~l~s~s~D~~v~vw~~ 563 (609)
|-...... .......|...|-+++|-++. . +|++++-.|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 86543211 111122366679999997754 2 7889999999999887
No 421
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=85.53 E-value=25 Score=38.46 Aligned_cols=95 Identities=17% Similarity=0.231 Sum_probs=52.1
Q ss_pred cCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCce
Q 007283 446 LRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREV 525 (609)
Q Consensus 446 ~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~ 525 (609)
..|.|..+.++|+|.++|..+..| |.|-.+... ......+++-...|.| +.+.+....
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r-~g~~~~~~~g~~~i~C-------------------rt~~v~~~~- 140 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRG-VVVLELPRR-WGKNGEFEDGKKEINC-------------------RTVPVDERF- 140 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCc-EEEEEeccc-cCccccccCCCcceeE-------------------EEEEechhh-
Confidence 346788999999999999988755 444444321 0000111111112222 222211110
Q ss_pred EEeeecCCCCceEEEEECCC---CcEEEEEeCCCeEEEEEcCC
Q 007283 526 KLKNMLYHTARINCLAWSPN---NSMVATGSLDTCVIIYEIDK 565 (609)
Q Consensus 526 ~~~~~~~h~~~i~~l~~s~d---~~~l~s~s~D~~v~vw~~~~ 565 (609)
....+...|..+.|+|. +.+|+.=..|+++++||+..
T Consensus 141 ---~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 141 ---FTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred ---ccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 01123456777888775 46777777888888888754
No 422
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=85.10 E-value=37 Score=32.66 Aligned_cols=150 Identities=13% Similarity=0.168 Sum_probs=76.2
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEE
Q 007283 448 FPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKL 527 (609)
Q Consensus 448 ~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~ 527 (609)
..+..+..++||++++++..-.-+.-|+--.... ......-...|.++.|+||+.+.+.+ ..+.+++=+........
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w--~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTW--QPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETW 221 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS---EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCccc--eEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccc
Confidence 4467777899999888886555556675321111 11222345789999999998887755 77888776511111111
Q ss_pred ee----ecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEec---cccCCeEEEEEcCCCeEEEEeCCCc
Q 007283 528 KN----MLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKG---AHLGGVYGLAFTDEHSVVSSGEDAC 600 (609)
Q Consensus 528 ~~----~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~---~h~~~v~~~~~s~~~~l~s~s~D~~ 600 (609)
.. ...-.-.+..++|.+++...|+|+. |++.+ ..+.++ -..-.. .-..-.+.+.|.+...-...|+||.
T Consensus 222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~~-S~DgGk--tW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ 297 (302)
T PF14870_consen 222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLLV-STDGGK--TWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGV 297 (302)
T ss_dssp ---B-TTSS--S-EEEEEESSSS-EEEEEST-T-EEE-ESSTTS--S-EE-GGGTTSSS---EEEEEETTEEEEE-STTE
T ss_pred ccccCCcccCceeeEEEEecCCCCEEEEeCC-ccEEE-eCCCCc--cceECccccCCCCceEEEEEcCCCceEEECCCcE
Confidence 11 1112334899999999887776654 44333 223221 111111 1133578999986566667899999
Q ss_pred EEEE
Q 007283 601 VRVW 604 (609)
Q Consensus 601 i~~W 604 (609)
+.-|
T Consensus 298 ll~~ 301 (302)
T PF14870_consen 298 LLRY 301 (302)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8766
No 423
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=84.79 E-value=3.9 Score=25.06 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=17.7
Q ss_pred ecccceeEEEECCCCCEEEEEECCC
Q 007283 98 VLSGRIDDLQWSPDGLRIVACGDGK 122 (609)
Q Consensus 98 ~~~~~v~~~~~spdg~~l~~~~~~~ 122 (609)
...+.-...+|||||++|+.+++..
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~ 30 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRN 30 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT
T ss_pred cCCccccCEEEecCCCEEEEEecCC
Confidence 3445667889999999999887543
No 424
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=84.68 E-value=37 Score=32.21 Aligned_cols=147 Identities=16% Similarity=0.127 Sum_probs=76.7
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEec-c
Q 007283 198 PDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT-P 276 (609)
Q Consensus 198 ~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~-~ 276 (609)
..++.|+.|+.+| +.+++.......... .+...|..+...|+-+.|+.-+ |++++++++..-.......... .
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i----~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI----LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeE----eecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 3567899998888 888887322222222 1233499999999888777776 5999999986421111100000 0
Q ss_pred ------CCCCCccceEEEE---EEcCCeEEEEEcCCcEEEEeCCCCCC----CceeeeCCCCCeEEEEEecCCCCEEEEE
Q 007283 277 ------SGSGGVDDMLVGC---LWQNDFLVIVSLGGTISIFSANDLEK----SPLQLSGHMKNVTALTVLNIDPKVILSS 343 (609)
Q Consensus 277 ------~~~~~~~~~~~~~---~~~~~~~~~~~~~g~i~~~~~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~t~ 343 (609)
..-.........+ ...+...+++.....+.+|.+..... ...++. -...+..+++.. ..++-|
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~---~~i~v~ 154 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLG---NKICVG 154 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeC---CEEEEE
Confidence 0000001111111 12234555566667888887765311 222322 235677777762 344444
Q ss_pred ecCCcEEEEecC
Q 007283 344 SYDGLIVKWIQG 355 (609)
Q Consensus 344 s~dg~i~~W~~~ 355 (609)
..++ ..+-++.
T Consensus 155 ~~~~-f~~idl~ 165 (275)
T PF00780_consen 155 TSKG-FYLIDLN 165 (275)
T ss_pred eCCc-eEEEecC
Confidence 4333 3334443
No 425
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=84.23 E-value=49 Score=33.30 Aligned_cols=137 Identities=11% Similarity=0.059 Sum_probs=61.1
Q ss_pred EEEEEeCCCCccccccccC---CCCcEEEEECCCCCEEEEEeC--------------------CCcEEEEcCCCCceeeE
Q 007283 38 SVIILDLSNPLQVSIYGEH---AYPATVARFSPNGEWIASADV--------------------SGTVRIWGAHNDHVLKK 94 (609)
Q Consensus 38 ~~~i~~~~~~~~~~~~~~h---~~~v~~~~~sp~g~~las~~~--------------------d~~i~vWd~~~~~~~~~ 94 (609)
.+.++|-++-+........ ...-....+.|--+.++|.+. ..++.+||+.+.+.++
T Consensus 158 gf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q- 236 (461)
T PF05694_consen 158 GFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQ- 236 (461)
T ss_dssp EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEE-
T ss_pred cEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEee-
Confidence 5666676554443333221 122355667888888887644 2489999999876433
Q ss_pred EEeecc--cceeEEEECCC--CCEEEEEECCCCcceEEEEEcCCCC----eeEEEec-----C------------CccEE
Q 007283 95 EFRVLS--GRIDDLQWSPD--GLRIVACGDGKGKSLVRAFMWDSGT----NVGEFDG-----H------------SRRVL 149 (609)
Q Consensus 95 ~~~~~~--~~v~~~~~spd--g~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-----h------------~~~v~ 149 (609)
.+..-. .....++|..| ..+=++... -...+.+.+.-+.+. .+.++.. - ..-|+
T Consensus 237 ~idLg~~g~~pLEvRflH~P~~~~gFvg~a-Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Lit 315 (461)
T PF05694_consen 237 TIDLGEEGQMPLEVRFLHDPDANYGFVGCA-LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLIT 315 (461)
T ss_dssp EEES-TTEEEEEEEEE-SSTT--EEEEEEE---EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-----
T ss_pred EEecCCCCCceEEEEecCCCCccceEEEEe-ccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceE
Confidence 333322 23556777665 333222211 111122222211221 1122211 1 24478
Q ss_pred EEEEeeCCCeEEEEecCCCeEEEEeCC
Q 007283 150 SCAFKPSRPFRIATCGEDFLVNFYEGP 176 (609)
Q Consensus 150 ~~~~~p~~~~~i~t~~~d~~i~~~~~~ 176 (609)
.+.+|.|+.++.+++=-.+.++.||+.
T Consensus 316 DI~iSlDDrfLYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 316 DILISLDDRFLYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp -EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred eEEEccCCCEEEEEcccCCcEEEEecC
Confidence 999999999988888888999999964
No 426
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=84.06 E-value=31 Score=30.93 Aligned_cols=58 Identities=28% Similarity=0.468 Sum_probs=40.1
Q ss_pred eCCCcEEEEcCCCCc-eeeEEEeecccceeEEEECCCCCEEEEEECCCCcc---eEEE-EEcCC
Q 007283 76 DVSGTVRIWGAHNDH-VLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKS---LVRA-FMWDS 134 (609)
Q Consensus 76 ~~d~~i~vWd~~~~~-~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~---~~~~-~~~~~ 134 (609)
.....|.+|++...+ .+...|... +.|..+.++.-|.+|++.-...... .+|+ ..|+.
T Consensus 35 ~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~ 97 (215)
T PF14761_consen 35 ASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRS 97 (215)
T ss_pred cCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhh
Confidence 456679999998433 334456554 6789999999999999986544443 4454 45654
No 427
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=82.51 E-value=42 Score=32.85 Aligned_cols=97 Identities=10% Similarity=0.097 Sum_probs=47.9
Q ss_pred CCCEEEEEeC-----CCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCe----EEEEEcCCCCCccee
Q 007283 502 DVSMFASGDV-----NREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTC----VIIYEIDKPASSRMT 572 (609)
Q Consensus 502 ~~~~l~s~s~-----d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~----v~vw~~~~~~~~~~~ 572 (609)
++.+.+.|+. ...+..||+.+.+.....-.....+....+...++++.+.|+.++. +.+||..+.....+.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~ 202 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVA 202 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECC
Confidence 5666676664 2457788887766533211111122222333346788888876642 457776543211111
Q ss_pred Ee-ccccC----CeEEEEEcCCCeEEEEeCC
Q 007283 573 IK-GAHLG----GVYGLAFTDEHSVVSSGED 598 (609)
Q Consensus 573 ~~-~~h~~----~v~~~~~s~~~~l~s~s~D 598 (609)
.. .++.. ...++...++.+++.||.+
T Consensus 203 ~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 203 DPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred CCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 00 01111 1223344466777888876
No 428
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=82.17 E-value=45 Score=34.75 Aligned_cols=122 Identities=14% Similarity=0.199 Sum_probs=61.6
Q ss_pred cceEEEEECCC----CCeEEEEeCCCcEEEeecccCC--CCceEEEeccCCCCCccceEEEEEEcCC--eEEEEEcCCcE
Q 007283 234 GSVYAVSWSPD----GKQVLTASADKSAKVWDISEDN--HGKLKKTLTPSGSGGVDDMLVGCLWQND--FLVIVSLGGTI 305 (609)
Q Consensus 234 ~~V~~l~~spd----~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i 305 (609)
..|..++|.|- -..|+......+|.+|.+.... ..++.-..+....+.+.-.--+|.|.++ .+.+.+....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 45899999985 3345566678899999985321 2222222111111122223346788755 33333333322
Q ss_pred EEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecC
Q 007283 306 SIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQG 355 (609)
Q Consensus 306 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~ 355 (609)
-+++........+.--.-.+.|.|.+|-..+.++++..+..=.-.+||..
T Consensus 137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 23333222222221112345677777765555666665554456678643
No 429
>PHA03098 kelch-like protein; Provisional
Probab=81.45 E-value=31 Score=36.69 Aligned_cols=145 Identities=11% Similarity=0.089 Sum_probs=66.6
Q ss_pred CCCEEEEEeCCC-----cEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCC------CeEEEEEccCCceE
Q 007283 458 DGSEAIIGSQDG-----KLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVN------REAIVWDRVSREVK 526 (609)
Q Consensus 458 ~g~~l~~gs~dg-----~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d------~~v~iwd~~~~~~~ 526 (609)
+++.++.|+.++ .+..||..++.......+......- ++ ..-++...+.|+.+ ..+..||..+.+..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 566777777652 4666776655432211111111111 11 12367777777742 45788888766553
Q ss_pred Eeee-cCCCCceEEEEECCCCcEEEEEeCCC--------eEEEEEcCCCCCcceeEeccccCCeEEEEEcCCCeEEEEeC
Q 007283 527 LKNM-LYHTARINCLAWSPNNSMVATGSLDT--------CVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGE 597 (609)
Q Consensus 527 ~~~~-~~h~~~i~~l~~s~d~~~l~s~s~D~--------~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~ 597 (609)
.... ....... + +...+++.++.|+.+. .+.+||..+.....+.... ..+.-.++...++..++.||.
T Consensus 420 ~~~~~p~~r~~~-~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~ 496 (534)
T PHA03098 420 KGSPLPISHYGG-C-AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLN-FPRINASLCIFNNKIYVVGGD 496 (534)
T ss_pred ecCCCCccccCc-e-EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCC-cccccceEEEECCEEEEEcCC
Confidence 2211 1011111 1 2223677777776432 3777876543221111111 111111222226666677775
Q ss_pred C-----CcEEEEEcc
Q 007283 598 D-----ACVRVWRLT 607 (609)
Q Consensus 598 D-----~~i~~W~~~ 607 (609)
+ ..+..+|..
T Consensus 497 ~~~~~~~~v~~yd~~ 511 (534)
T PHA03098 497 KYEYYINEIEVYDDK 511 (534)
T ss_pred cCCcccceeEEEeCC
Confidence 4 355555543
No 430
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=81.33 E-value=6.6 Score=39.50 Aligned_cols=91 Identities=15% Similarity=0.229 Sum_probs=55.0
Q ss_pred EEEEcCCCCEEEEEeCCCcEEE---EEecC-C----ee--eeeEEEecCC-CceEEEE---E--------CCCCCEEEEE
Q 007283 452 ASAIAPDGSEAIIGSQDGKLRV---YSIRG-D----TL--TEEAVLEKHR-GAVSVIR---Y--------SPDVSMFASG 509 (609)
Q Consensus 452 ~~~~sp~g~~l~~gs~dg~i~i---w~~~~-~----~~--~~~~~~~~h~-~~i~~v~---~--------s~~~~~l~s~ 509 (609)
.++++|+++.+|.+..+.-+.+ |+... + .. .....+.... ..|+++. + .||...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 3577999999999987776655 53311 1 11 0011122111 3555544 3 2557899999
Q ss_pred eCCCeEEEEEccCCceEEeeecCCCCceEEEEECC
Q 007283 510 DVNREAIVWDRVSREVKLKNMLYHTARINCLAWSP 544 (609)
Q Consensus 510 s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~ 544 (609)
..+|.+++|.. ++...+.+ ..|..+|..++.-.
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q-~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQ-LLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEec-cchHHHHH-hcCccceEEEEecc
Confidence 99999999985 44333332 34788888877753
No 431
>PHA02790 Kelch-like protein; Provisional
Probab=81.16 E-value=36 Score=35.57 Aligned_cols=143 Identities=10% Similarity=0.041 Sum_probs=70.8
Q ss_pred CCCCEEEEEeCCC--cEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCC---eEEEEEccCCceEEeeec
Q 007283 457 PDGSEAIIGSQDG--KLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNR---EAIVWDRVSREVKLKNML 531 (609)
Q Consensus 457 p~g~~l~~gs~dg--~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~---~v~iwd~~~~~~~~~~~~ 531 (609)
-+|...++|+.++ .+..|+...+.......+.........+ .-+|+..+.|+.++ ++..||..+.........
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m 394 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST 394 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC
Confidence 3567777777543 5677776544332212221111111122 23788888887653 466788776655432111
Q ss_pred C-CCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEcCCCeEEEEeCC-----CcEEEEE
Q 007283 532 Y-HTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGED-----ACVRVWR 605 (609)
Q Consensus 532 ~-h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~D-----~~i~~W~ 605 (609)
. .......+ .-+++..+.|+ .+.+||..+.......... +.+.-.+++..+++..+.||.+ .++..+|
T Consensus 395 ~~~r~~~~~~--~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~-~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd 468 (480)
T PHA02790 395 YYPHYKSCAL--VFGRRLFLVGR---NAEFYCESSNTWTLIDDPI-YPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYN 468 (480)
T ss_pred CCccccceEE--EECCEEEEECC---ceEEecCCCCcEeEcCCCC-CCccccEEEEECCEEEEECCcCCCcccceEEEEE
Confidence 1 11111122 33677777774 5778887643322111111 1111123444477777778764 3566666
Q ss_pred cc
Q 007283 606 LT 607 (609)
Q Consensus 606 ~~ 607 (609)
..
T Consensus 469 ~~ 470 (480)
T PHA02790 469 NR 470 (480)
T ss_pred CC
Confidence 54
No 432
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=81.13 E-value=85 Score=34.09 Aligned_cols=61 Identities=23% Similarity=0.334 Sum_probs=43.5
Q ss_pred cccCCCCcEEEEECCCCCEEEEEeCCC--cEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEE
Q 007283 53 YGEHAYPATVARFSPNGEWIASADVSG--TVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVA 117 (609)
Q Consensus 53 ~~~h~~~v~~~~~sp~g~~las~~~d~--~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~ 117 (609)
+..+...+..+.++|+|++++..+.++ ..++|....+. ....+...+....|+|+|..++.
T Consensus 55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g----~~~~~~~~v~~~~~~~~g~~~~~ 117 (620)
T COG1506 55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG----LITKTAFGVSDARWSPDGDRIAF 117 (620)
T ss_pred ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC----ceeeeecccccceeCCCCCeEEE
Confidence 444667789999999999999776433 45677654331 22334556888999999998887
No 433
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=81.09 E-value=8.9 Score=40.87 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=26.5
Q ss_pred CcEEEEECC----CCCEEEEEeCCCcEEEEcCCCCcee
Q 007283 59 PATVARFSP----NGEWIASADVSGTVRIWGAHNDHVL 92 (609)
Q Consensus 59 ~v~~~~~sp----~g~~las~~~d~~i~vWd~~~~~~~ 92 (609)
.+..+++++ +..+|++.+.|+++|+||+.+++++
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~ 253 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCL 253 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEE
Confidence 456677777 7789999999999999999998753
No 434
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=80.73 E-value=52 Score=31.15 Aligned_cols=116 Identities=11% Similarity=0.213 Sum_probs=60.6
Q ss_pred eEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEec----------CCCceEEEEECCCCCEEEEEe
Q 007283 441 VSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEK----------HRGAVSVIRYSPDVSMFASGD 510 (609)
Q Consensus 441 ~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~----------h~~~i~~v~~s~~~~~l~s~s 510 (609)
...+.....+..+++. +..++.|..++ ..+.|+.++.......... ...++..+..+ ++.+|+.
T Consensus 132 ~ke~~lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~-- 205 (275)
T PF00780_consen 132 LKEISLPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLC-- 205 (275)
T ss_pred eEEEEcCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEE--
Confidence 3444555667777777 56677776444 7788887554322111111 12245555554 4566664
Q ss_pred CCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCC
Q 007283 511 VNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKP 566 (609)
Q Consensus 511 ~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~ 566 (609)
.|....+-|..+.......+. =.....++++. ..+|+.-. ++.|.||++.++
T Consensus 206 ~~~~g~fv~~~G~~~r~~~i~-W~~~p~~~~~~--~pyli~~~-~~~iEV~~~~~~ 257 (275)
T PF00780_consen 206 YDNIGVFVNKNGEPSRKSTIQ-WSSAPQSVAYS--SPYLIAFS-SNSIEVRSLETG 257 (275)
T ss_pred ecceEEEEcCCCCcCcccEEE-cCCchhEEEEE--CCEEEEEC-CCEEEEEECcCC
Confidence 344445555443221111111 12345566663 34665544 466999999864
No 435
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=79.83 E-value=0.24 Score=49.01 Aligned_cols=138 Identities=18% Similarity=0.237 Sum_probs=91.0
Q ss_pred EcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCE-EEEEeCCCeEEEEEccCCceEEeee-cC
Q 007283 455 IAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSM-FASGDVNREAIVWDRVSREVKLKNM-LY 532 (609)
Q Consensus 455 ~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~-l~s~s~d~~v~iwd~~~~~~~~~~~-~~ 532 (609)
.-|.+..++.++.+..+..||-.+.... + ..-++....++|.-++.. ++.+-..+.+.+||+.+.....-+. ..
T Consensus 42 w~~e~~nlavaca~tiv~~YD~agq~~l-e---~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~ 117 (615)
T KOG2247|consen 42 WRPEGHNLAVACANTIVIYYDKAGQVIL-E---LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGT 117 (615)
T ss_pred EecCCCceehhhhhhHHHhhhhhcceec-c---cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCc
Confidence 4566677888888999999985443221 1 122344445556555543 3445567789999986543211111 12
Q ss_pred CCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEecc-ccCCeEEEEEcCCCeEEEEeCCCcE
Q 007283 533 HTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGA-HLGGVYGLAFTDEHSVVSSGEDACV 601 (609)
Q Consensus 533 h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~l~s~s~D~~i 601 (609)
|+... +.|++-...++.+...+.+.+++..+ .+..+..| |.+++..+++..+.+.+.++.|..+
T Consensus 118 ~s~sl--l~wsKg~~el~ig~~~gn~viynhgt---sR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L 182 (615)
T KOG2247|consen 118 SSKSL--LAWSKGTPELVIGNNAGNIVIYNHGT---SRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTL 182 (615)
T ss_pred chHHH--HhhccCCccccccccccceEEEeccc---hhhhhhhcccccceeEEEecccceeeecCcHHHH
Confidence 33333 78999999999999999999998765 33444455 9999999999877777777766543
No 436
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=79.82 E-value=9 Score=38.63 Aligned_cols=49 Identities=22% Similarity=0.386 Sum_probs=39.6
Q ss_pred CEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEE
Q 007283 70 EWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACG 119 (609)
Q Consensus 70 ~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~ 119 (609)
-|||.|+..|.||++|.-..+ -+..+++....|..+..+.+|++++++.
T Consensus 574 GyIa~as~kGDirLyDRig~r-AKtalP~lG~aIk~idvta~Gk~ilaTC 622 (776)
T COG5167 574 GYIAAASRKGDIRLYDRIGKR-AKTALPGLGDAIKHIDVTANGKHILATC 622 (776)
T ss_pred ceEEEecCCCceeeehhhcch-hhhcCcccccceeeeEeecCCcEEEEee
Confidence 389999999999999976533 3345677788899999999999988876
No 437
>PRK10115 protease 2; Provisional
Probab=79.21 E-value=1.1e+02 Score=33.80 Aligned_cols=113 Identities=9% Similarity=-0.006 Sum_probs=63.0
Q ss_pred eeEEEECCCCCEEEEEECCCCcce--EEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCC-----CeEEEEeC
Q 007283 103 IDDLQWSPDGLRIVACGDGKGKSL--VRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGED-----FLVNFYEG 175 (609)
Q Consensus 103 v~~~~~spdg~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d-----~~i~~~~~ 175 (609)
+..+.|||||++|+...|..+... +++.+..++..+........ ..++|.+++..++.+.-.+ ..+..++.
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l 206 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI 206 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence 667899999998888776544433 45555554542221111111 4589999988666654322 35666666
Q ss_pred CCC--ceeeeccCcccceE-EEEEcCCCCEEEEEeC---CCcEEEEeC
Q 007283 176 PPF--KFKLSHRGHSNFVN-CVRFSPDGSKFISVSS---DKKGIIYDG 217 (609)
Q Consensus 176 ~~~--~~~~~~~~h~~~v~-~l~~s~dg~~l~s~~~---d~~i~iwd~ 217 (609)
.+. +....+.+...... .+..+.|+++++..+. ++.+.+++.
T Consensus 207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 655 33333433222222 3444558886654433 456778774
No 438
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=78.60 E-value=52 Score=29.90 Aligned_cols=135 Identities=13% Similarity=0.129 Sum_probs=73.9
Q ss_pred CcEEEEECCCCCEEEEEeCC---------CcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEE
Q 007283 59 PATVARFSPNGEWIASADVS---------GTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRA 129 (609)
Q Consensus 59 ~v~~~~~sp~g~~las~~~d---------~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~ 129 (609)
..+.-..+|+|+|.+---+| |.++.|-..- ++. .....-..-..++|+.|-+.+-.+... ...+..
T Consensus 110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-~v~--~i~~~v~IsNgl~Wd~d~K~fY~iDsl--n~~V~a 184 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH-QVE--LIWNCVGISNGLAWDSDAKKFYYIDSL--NYEVDA 184 (310)
T ss_pred ccccCccCCCCceeeeeeccccccccccccEEEEeccCC-Cce--eeehhccCCccccccccCcEEEEEccC--ceEEee
Confidence 34555679999997632222 3455554322 110 011111223678999888766655322 223444
Q ss_pred EEcCC--C-----CeeEEEecCC----ccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcC
Q 007283 130 FMWDS--G-----TNVGEFDGHS----RRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSP 198 (609)
Q Consensus 130 ~~~~~--~-----~~~~~~~~h~----~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 198 (609)
|+++- + +.+..++..+ ..--.+++.-.|. +.+++-+.++++-.|..+++...+++-....|+|++|--
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~-L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGN-LYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCc-EEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 66542 2 1122222211 0111233333444 466666777888889899998888777788899999964
Q ss_pred C
Q 007283 199 D 199 (609)
Q Consensus 199 d 199 (609)
.
T Consensus 264 k 264 (310)
T KOG4499|consen 264 K 264 (310)
T ss_pred C
Confidence 3
No 439
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=78.55 E-value=50 Score=33.89 Aligned_cols=54 Identities=13% Similarity=0.125 Sum_probs=36.0
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeE----EEe-cCCCceEEEEECCCC
Q 007283 450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEA----VLE-KHRGAVSVIRYSPDV 503 (609)
Q Consensus 450 ~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~----~~~-~h~~~i~~v~~s~~~ 503 (609)
...+++.|||+.+++--..|+|++++-.+....... +.. .-.+....|+++|+.
T Consensus 32 Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 32 PWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred ceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 577899999988777655799999875433211111 111 125678999999986
No 440
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=78.36 E-value=61 Score=30.59 Aligned_cols=144 Identities=11% Similarity=0.089 Sum_probs=85.7
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecC---CCceEEEEECCCCCEEEEEeCCCeEEEEEccCCce
Q 007283 449 PVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKH---RGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREV 525 (609)
Q Consensus 449 ~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h---~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~ 525 (609)
.+..+.++ +++...+..+.-|+|+|+.+... .++.+. .+--.++.. .|.+.-++..|.-+.+.|+.+...
T Consensus 88 l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~s---P~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 88 LFADVRVS--EEYVYVADWSSGLRIVDISTPDS---PTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhheeEec--ccEEEEEcCCCceEEEeccCCCC---cceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCC
Confidence 34445555 45666777788899999976542 122221 122334444 466666667677788888776543
Q ss_pred EE-e-eecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEcCCCeEEEEeCCCcE
Q 007283 526 KL-K-NMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACV 601 (609)
Q Consensus 526 ~~-~-~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~D~~i 601 (609)
.. + ........-..++.| |++-..+..|+-+.+-|+..+....+.-..--.+.+.++..|+++.++.....|.+
T Consensus 161 P~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~egvl 236 (370)
T COG5276 161 PQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVL 236 (370)
T ss_pred ceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccceE
Confidence 22 1 222333344677776 66677788999999999976543322111111237888888887766666555544
No 441
>PHA03098 kelch-like protein; Provisional
Probab=77.95 E-value=47 Score=35.31 Aligned_cols=106 Identities=13% Similarity=0.206 Sum_probs=52.5
Q ss_pred CCCCEEEEEeCCC------cEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCC-----CeEEEEEccCCce
Q 007283 457 PDGSEAIIGSQDG------KLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVN-----REAIVWDRVSREV 525 (609)
Q Consensus 457 p~g~~l~~gs~dg------~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d-----~~v~iwd~~~~~~ 525 (609)
.++..++.|+.++ .+..||..++.......+.........+. -++...+.|+.+ .++..||..+...
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 4556666666543 46677766554422211111111122222 367788888765 3466788776654
Q ss_pred EEeeecCCCCceEEEEECCCCcEEEEEeCC------CeEEEEEcCC
Q 007283 526 KLKNMLYHTARINCLAWSPNNSMVATGSLD------TCVIIYEIDK 565 (609)
Q Consensus 526 ~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D------~~v~vw~~~~ 565 (609)
.......+...-.+++ .-+++..+.|+.+ ..+..||..+
T Consensus 371 ~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t 415 (534)
T PHA03098 371 REEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNT 415 (534)
T ss_pred eeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCC
Confidence 3211111111111122 2367777777732 4577888754
No 442
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=77.91 E-value=84 Score=31.90 Aligned_cols=148 Identities=18% Similarity=0.138 Sum_probs=74.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcc-ccccCcCCCCccceEEEEECC----CCCeEEEEeCCCcEEEeecccCCC-------
Q 007283 200 GSKFISVSSDKKGIIYDGKTADK-IGELSPEDGHKGSVYAVSWSP----DGKQVLTASADKSAKVWDISEDNH------- 267 (609)
Q Consensus 200 g~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~h~~~V~~l~~sp----d~~~l~s~s~d~~i~iwd~~~~~~------- 267 (609)
...|++|+..|.++||++..... ...+-.+..-+.+|..+..-+ .....+..=.-+.+.+|.+.....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 35899999999999999854331 111111122346787777543 223333445667888887732111
Q ss_pred CceEEEeccCCCCCccceEEEEEEc---CCeEEEEEcCCcEEEEeCCCCCCCceeeeC--CCCCeEEEEEecCCCCEEEE
Q 007283 268 GKLKKTLTPSGSGGVDDMLVGCLWQ---NDFLVIVSLGGTISIFSANDLEKSPLQLSG--HMKNVTALTVLNIDPKVILS 342 (609)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~t 342 (609)
.++...+...-......++.+..-. .+++.+-+.||.+.+|+.+... ....+++ ..++ +.+.+. ...+++
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~-f~~~lp~~llPgP---l~Y~~~-tDsfvt 191 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA-FSRFLPDFLLPGP---LCYCPR-TDSFVT 191 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE-EEEEcCCCCCCcC---eEEeec-CCEEEE
Confidence 1111111111111111122222111 3567777899999999754321 0111111 2222 344432 246788
Q ss_pred EecCCcEEEE
Q 007283 343 SSYDGLIVKW 352 (609)
Q Consensus 343 ~s~dg~i~~W 352 (609)
++.+..+.-+
T Consensus 192 ~sss~~l~~Y 201 (418)
T PF14727_consen 192 ASSSWTLECY 201 (418)
T ss_pred ecCceeEEEe
Confidence 8877777766
No 443
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=77.64 E-value=10 Score=40.39 Aligned_cols=69 Identities=13% Similarity=0.219 Sum_probs=41.7
Q ss_pred CCCCEEEEEeCCCcEEEEEecC---Ce-eeeeEEEec--------------------CCCceEEEEECC----CCCEEEE
Q 007283 457 PDGSEAIIGSQDGKLRVYSIRG---DT-LTEEAVLEK--------------------HRGAVSVIRYSP----DVSMFAS 508 (609)
Q Consensus 457 p~g~~l~~gs~dg~i~iw~~~~---~~-~~~~~~~~~--------------------h~~~i~~v~~s~----~~~~l~s 508 (609)
++...++++..||.|...+... .. ......... -.+.+.+++.++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4667788888999888887654 11 000011111 123456667776 7789999
Q ss_pred EeCCCeEEEEEccCCce
Q 007283 509 GDVNREAIVWDRVSREV 525 (609)
Q Consensus 509 ~s~d~~v~iwd~~~~~~ 525 (609)
-+.|+++|+||+.+++.
T Consensus 236 l~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EETTSEEEEEETTTTCE
T ss_pred EeCCCeEEEEECCCCeE
Confidence 99999999999988766
No 444
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=76.22 E-value=44 Score=34.24 Aligned_cols=105 Identities=10% Similarity=0.080 Sum_probs=58.8
Q ss_pred ceeEEeecCCCCeEEEeC-CCEEEEEeCCCCcc--cccc----c-cCCCCcEEEEECCCC------C--EEEEEeC--C-
Q 007283 18 RGILISGHPKSNSILYTN-GRSVIILDLSNPLQ--VSIY----G-EHAYPATVARFSPNG------E--WIASADV--S- 78 (609)
Q Consensus 18 ~~~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~--~~~~----~-~h~~~v~~~~~sp~g------~--~las~~~--d- 78 (609)
.|..+.+.|||..|+.-. .++|++++..+... ...+ . .-.+....++|+|+= + |+..... +
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~ 110 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDK 110 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCC
Confidence 456889999999888876 47777776544322 1111 1 124567889999874 2 3432221 1
Q ss_pred ---CcEEE--EcCCCC--ce--eeEEEeec----ccceeEEEECCCCCEEEEEECCC
Q 007283 79 ---GTVRI--WGAHND--HV--LKKEFRVL----SGRIDDLQWSPDGLRIVACGDGK 122 (609)
Q Consensus 79 ---~~i~v--Wd~~~~--~~--~~~~~~~~----~~~v~~~~~spdg~~l~~~~~~~ 122 (609)
..-+| |.+... .. ....+... .+.-..++|.|||..++++||..
T Consensus 111 ~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g 167 (454)
T TIGR03606 111 ELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQG 167 (454)
T ss_pred CccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCC
Confidence 12344 333211 11 11122222 12345788999999999998763
No 445
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=75.70 E-value=61 Score=29.17 Aligned_cols=68 Identities=13% Similarity=0.105 Sum_probs=43.2
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeC------CCeEEEE
Q 007283 449 PVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDV------NREAIVW 518 (609)
Q Consensus 449 ~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~------d~~v~iw 518 (609)
+...++.++.+.++++ .....|.+|++..........+.- -+.|..+.+++.|.|+++--. ...+|+|
T Consensus 19 EP~~~c~~g~d~Lfva-~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVA-ASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred CcceeeccCCceEEEE-cCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 3444555543444443 566789999998444333333332 378999999999999998432 2256665
No 446
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.11 E-value=96 Score=35.77 Aligned_cols=35 Identities=11% Similarity=0.234 Sum_probs=30.2
Q ss_pred CCccceEEEEECCCCCeEEEEeCCCcEEEeecccC
Q 007283 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISED 265 (609)
Q Consensus 231 ~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~ 265 (609)
.+..+|..+........+.+-+..++|+.||+..+
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence 56778999999888888889999999999999764
No 447
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=74.70 E-value=32 Score=37.18 Aligned_cols=104 Identities=14% Similarity=0.186 Sum_probs=68.9
Q ss_pred CCCEEEEEeCCCeEEEEEccC-------C----c-----eEEee--ecCCCCceEEEEEC--CCCcEEEEEeCCCeEEEE
Q 007283 502 DVSMFASGDVNREAIVWDRVS-------R----E-----VKLKN--MLYHTARINCLAWS--PNNSMVATGSLDTCVIIY 561 (609)
Q Consensus 502 ~~~~l~s~s~d~~v~iwd~~~-------~----~-----~~~~~--~~~h~~~i~~l~~s--~d~~~l~s~s~D~~v~vw 561 (609)
+...|+.+..||.|.+|..+. . + ..++. ........+.++++ ...++||.++.-..|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 345777888999999996421 0 0 00000 11234578999998 888999999999999998
Q ss_pred EcCCCCCcceeE--eccccCCeEEEEEcCC----C---eEEEEeCCCcEEEEEc
Q 007283 562 EIDKPASSRMTI--KGAHLGGVYGLAFTDE----H---SVVSSGEDACVRVWRL 606 (609)
Q Consensus 562 ~~~~~~~~~~~~--~~~h~~~v~~~~~s~~----~---~l~s~s~D~~i~~W~~ 606 (609)
-..... .+... ...|..-|-+|.|-++ . .|++++-.|.+.+|++
T Consensus 193 af~l~~-~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVD-ERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccc-cccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 765421 11111 1135566889999622 2 6788999999999887
No 448
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=74.59 E-value=30 Score=33.89 Aligned_cols=99 Identities=17% Similarity=0.161 Sum_probs=54.6
Q ss_pred cCceeEEeecCCCCeE-EEeCCCEEEEEeCCCCccccccccCCC-----CcEEEEECCCCCEEEE---------------
Q 007283 16 RGRGILISGHPKSNSI-LYTNGRSVIILDLSNPLQVSIYGEHAY-----PATVARFSPNGEWIAS--------------- 74 (609)
Q Consensus 16 ~~~~~~~~~~~~~~~l-~~~~~~~~~i~~~~~~~~~~~~~~h~~-----~v~~~~~sp~g~~las--------------- 74 (609)
=|||.-|+++.+|.-| +..+.--+..-+..+++... +..+.+ ..+.+.++|+|....|
T Consensus 114 CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~-l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~ 192 (376)
T KOG1520|consen 114 CGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAEL-LADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAA 192 (376)
T ss_pred cCCcceEEeccCCCeEEEEecceeeEEECCCCCccee-ccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEee
Confidence 4999999999998444 44444455555655554221 222211 1344555665554433
Q ss_pred --EeCCCcEEEEcCCCCc--eeeEEEeecccceeEEEECCCCCEEEEEE
Q 007283 75 --ADVSGTVRIWGAHNDH--VLKKEFRVLSGRIDDLQWSPDGLRIVACG 119 (609)
Q Consensus 75 --~~~d~~i~vWd~~~~~--~~~~~~~~~~~~v~~~~~spdg~~l~~~~ 119 (609)
+..+|.+--+|..++. ++...+. -...++.|||+.+++.+-
T Consensus 193 l~g~~~GRl~~YD~~tK~~~VLld~L~----F~NGlaLS~d~sfvl~~E 237 (376)
T KOG1520|consen 193 LEGDPTGRLFRYDPSTKVTKVLLDGLY----FPNGLALSPDGSFVLVAE 237 (376)
T ss_pred ecCCCccceEEecCcccchhhhhhccc----ccccccCCCCCCEEEEEe
Confidence 3334555555554432 1222222 246789999999888764
No 449
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=73.46 E-value=96 Score=30.41 Aligned_cols=158 Identities=19% Similarity=0.225 Sum_probs=85.5
Q ss_pred eeEEEEcCCCCEEEEEeCCCc------EEEEEecCC--ee-----eeeEEEecCCC--------ceEEEEECCCCCEEEE
Q 007283 450 VTASAIAPDGSEAIIGSQDGK------LRVYSIRGD--TL-----TEEAVLEKHRG--------AVSVIRYSPDVSMFAS 508 (609)
Q Consensus 450 ~~~~~~sp~g~~l~~gs~dg~------i~iw~~~~~--~~-----~~~~~~~~h~~--------~i~~v~~s~~~~~l~s 508 (609)
.+.+++.|++..+++-+.+|. ++.+++... .. .....+..-.+ ..-+|++.++|.++++
T Consensus 22 lSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~is 101 (326)
T PF13449_consen 22 LSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFWIS 101 (326)
T ss_pred EeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEEEE
Confidence 566777765555666666776 655555431 00 01111221112 3347788889999998
Q ss_pred EeCC------CeEEEEEccCCce-EE--ee-e---------cCCCCceEEEEECCCCcEEEEEeC-----CC--------
Q 007283 509 GDVN------REAIVWDRVSREV-KL--KN-M---------LYHTARINCLAWSPNNSMVATGSL-----DT-------- 556 (609)
Q Consensus 509 ~s~d------~~v~iwd~~~~~~-~~--~~-~---------~~h~~~i~~l~~s~d~~~l~s~s~-----D~-------- 556 (609)
.-.+ ..|+.++...... .+ .. + ...+..+.+|+++|||+.|.++.. |+
T Consensus 102 ~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~ 181 (326)
T PF13449_consen 102 SEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNG 181 (326)
T ss_pred eCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccccccC
Confidence 8777 7888887552211 11 00 1 124567999999999996655432 22
Q ss_pred -eEEEEEcCCCC----CcceeEecc------ccCCeEEEEEc-CCCeEE-----EEeCCCcEEEEEcc
Q 007283 557 -CVIIYEIDKPA----SSRMTIKGA------HLGGVYGLAFT-DEHSVV-----SSGEDACVRVWRLT 607 (609)
Q Consensus 557 -~v~vw~~~~~~----~~~~~~~~~------h~~~v~~~~~s-~~~~l~-----s~s~D~~i~~W~~~ 607 (609)
.++++..+... ......... ....|..+.+. +++.|+ +.+....++++.++
T Consensus 182 ~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 182 SPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 16666655321 011111111 34567777776 555443 22245566666654
No 450
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=72.64 E-value=52 Score=27.03 Aligned_cols=106 Identities=14% Similarity=0.261 Sum_probs=57.0
Q ss_pred ECCCCCEEEEEeCCCeEEEEEccCCceEE------eeecCCCCceEEEEECC---C--CcEEEEEeCCCeEEEEEcCCCC
Q 007283 499 YSPDVSMFASGDVNREAIVWDRVSREVKL------KNMLYHTARINCLAWSP---N--NSMVATGSLDTCVIIYEIDKPA 567 (609)
Q Consensus 499 ~s~~~~~l~s~s~d~~v~iwd~~~~~~~~------~~~~~h~~~i~~l~~s~---d--~~~l~s~s~D~~v~vw~~~~~~ 567 (609)
|.....-|+.+..-+.|.|++........ ..+.--...|++++--| + ...|+.|+ ...+..||+..-.
T Consensus 6 fDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~ 84 (136)
T PF14781_consen 6 FDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNS 84 (136)
T ss_pred eCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCc
Confidence 33344456666677777777654332111 01222445677764433 2 34555555 4569999997422
Q ss_pred CcceeEeccccCCeEEEEEc-----CCCeEEEEe--------CCCcEEEEEccC
Q 007283 568 SSRMTIKGAHLGGVYGLAFT-----DEHSVVSSG--------EDACVRVWRLTP 608 (609)
Q Consensus 568 ~~~~~~~~~h~~~v~~~~~s-----~~~~l~s~s--------~D~~i~~W~~~~ 608 (609)
-+ +...-..+|.++.+- ++..++.|| .+|.=.+|++..
T Consensus 85 --d~-Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVtg 135 (136)
T PF14781_consen 85 --DL-FYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVTG 135 (136)
T ss_pred --hh-hhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEecc
Confidence 11 112233667777762 344555554 567778888764
No 451
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=72.24 E-value=1.1e+02 Score=30.35 Aligned_cols=43 Identities=5% Similarity=-0.015 Sum_probs=21.6
Q ss_pred CeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCC
Q 007283 513 REAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLD 555 (609)
Q Consensus 513 ~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D 555 (609)
..+..||..+.+............-......-++++++.|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeee
Confidence 4688899877665432111111111111222367877777653
No 452
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=72.17 E-value=40 Score=29.37 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=21.1
Q ss_pred eEEeecCCCCeEEEeCCCEEEEEeCCCCc
Q 007283 20 ILISGHPKSNSILYTNGRSVIILDLSNPL 48 (609)
Q Consensus 20 ~~~~~~~~~~~l~~~~~~~~~i~~~~~~~ 48 (609)
-+|+.++||+ |+...++.|.|.+...+.
T Consensus 8 ~~l~WS~Dg~-laV~t~~~v~IL~~~~P~ 35 (173)
T PF12657_consen 8 NALAWSEDGQ-LAVATGESVHILDPQTPN 35 (173)
T ss_pred cCeeECCCCC-EEEEcCCeEEEEeccCCc
Confidence 3799999996 666667788888666655
No 453
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=72.01 E-value=62 Score=32.78 Aligned_cols=39 Identities=18% Similarity=0.083 Sum_probs=32.2
Q ss_pred EEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCc
Q 007283 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSRE 524 (609)
Q Consensus 486 ~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~ 524 (609)
.+......+.+|..+|++++.|+.+.=|.|.++|+.+..
T Consensus 302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~ 340 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGI 340 (415)
T ss_pred eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCCh
Confidence 344555678889999999999999999999999987654
No 454
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=71.51 E-value=1.4e+02 Score=31.36 Aligned_cols=56 Identities=9% Similarity=0.055 Sum_probs=32.9
Q ss_pred CCEEEEEeCCCCccccccccCCC------C-cE-EEEECCCCCEEEEEeCCCcEEEEcCCCCcee
Q 007283 36 GRSVIILDLSNPLQVSIYGEHAY------P-AT-VARFSPNGEWIASADVSGTVRIWGAHNDHVL 92 (609)
Q Consensus 36 ~~~~~i~~~~~~~~~~~~~~h~~------~-v~-~~~~sp~g~~las~~~d~~i~vWd~~~~~~~ 92 (609)
.+.++-+|..+++.+-.+..... . +. .+++. ++..+..++.++.|.-.|..+++.+
T Consensus 70 ~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~ 133 (488)
T cd00216 70 HSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQV 133 (488)
T ss_pred CCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEe
Confidence 46777788888776543332211 0 00 01111 2256666778999999999888754
No 455
>PRK13684 Ycf48-like protein; Provisional
Probab=70.90 E-value=1.1e+02 Score=30.08 Aligned_cols=149 Identities=13% Similarity=0.128 Sum_probs=83.3
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEE-EEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceE
Q 007283 448 FPVTASAIAPDGSEAIIGSQDGKLRV-YSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVK 526 (609)
Q Consensus 448 ~~~~~~~~sp~g~~l~~gs~dg~i~i-w~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~ 526 (609)
..+..+.+.|++.++++|. .|.+.. ++-...... .....-...+.++.+.|+++.+++| ..+.+++=....++.
T Consensus 173 g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~--~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s- 247 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWT--PHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES- 247 (334)
T ss_pred ceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEE--EeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc-
Confidence 3467788899987766654 554432 221111121 1222334678999999999988776 456665322222111
Q ss_pred EeeecC----CCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEec---cccCCeEEEEEcCCCeEEEEeCCC
Q 007283 527 LKNMLY----HTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKG---AHLGGVYGLAFTDEHSVVSSGEDA 599 (609)
Q Consensus 527 ~~~~~~----h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~---~h~~~v~~~~~s~~~~l~s~s~D~ 599 (609)
.+.... -...+.++.+.|+++.++ ++.+|.|. ...+.+. ...... +-....+.+.|.++...+..|..|
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~--tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G 323 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGK--TWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRG 323 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCC--CCeECCcCCCCCcceEEEEEeCCCceEEECCCc
Confidence 111111 124578899999887655 44567554 3333221 122111 111347788888666667788889
Q ss_pred cEEEEE
Q 007283 600 CVRVWR 605 (609)
Q Consensus 600 ~i~~W~ 605 (609)
.|.-|+
T Consensus 324 ~il~~~ 329 (334)
T PRK13684 324 VLLRYV 329 (334)
T ss_pred eEEEec
Confidence 988775
No 456
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=70.81 E-value=60 Score=31.73 Aligned_cols=96 Identities=8% Similarity=0.097 Sum_probs=45.3
Q ss_pred CCCEEEEEeC-----CCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCe----EEEEEccCCceEEe
Q 007283 458 DGSEAIIGSQ-----DGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNRE----AIVWDRVSREVKLK 528 (609)
Q Consensus 458 ~g~~l~~gs~-----dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~----v~iwd~~~~~~~~~ 528 (609)
+++..+.|+. ...+..||..++.......+... .........-++++.+.|+.++. +..||..+.+....
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~ 201 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKV 201 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEEC
Confidence 3455555553 13567777665543222111111 11112222346777777776542 45788776655321
Q ss_pred eecC--CCC----ceEEEEECCCCcEEEEEeCC
Q 007283 529 NMLY--HTA----RINCLAWSPNNSMVATGSLD 555 (609)
Q Consensus 529 ~~~~--h~~----~i~~l~~s~d~~~l~s~s~D 555 (609)
.... +.. ...++.+ .++++++.|+.+
T Consensus 202 ~~~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~ 233 (323)
T TIGR03548 202 ADPTTDSEPISLLGAASIKI-NESLLLCIGGFN 233 (323)
T ss_pred CCCCCCCCceeccceeEEEE-CCCEEEEECCcC
Confidence 1100 000 1112222 367888888876
No 457
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=69.59 E-value=62 Score=26.62 Aligned_cols=66 Identities=15% Similarity=0.164 Sum_probs=42.4
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCc--------cccccCcCCCCccceEEEEECC----C-CCeEEEEeCCCcEEEe
Q 007283 194 VRFSPDGSKFISVSSDKKGIIYDGKTAD--------KIGELSPEDGHKGSVYAVSWSP----D-GKQVLTASADKSAKVW 260 (609)
Q Consensus 194 l~~s~dg~~l~s~~~d~~i~iwd~~~~~--------~~~~~~~~~~h~~~V~~l~~sp----d-~~~l~s~s~d~~i~iw 260 (609)
-.|......|+.++..+.|.|+++.... .+..+ .-...|++|+-.| + ...|+.| ...++-.|
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L----Nin~~italaaG~l~~~~~~D~LliG-t~t~llaY 78 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL----NINQEITALAAGRLKPDDGRDCLLIG-TQTSLLAY 78 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE----ECCCceEEEEEEecCCCCCcCEEEEe-ccceEEEE
Confidence 4565555678889999999999876433 22222 2345677776544 2 2345555 46789999
Q ss_pred eccc
Q 007283 261 DISE 264 (609)
Q Consensus 261 d~~~ 264 (609)
|+..
T Consensus 79 DV~~ 82 (136)
T PF14781_consen 79 DVEN 82 (136)
T ss_pred Eccc
Confidence 9864
No 458
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=69.54 E-value=32 Score=30.00 Aligned_cols=29 Identities=21% Similarity=0.421 Sum_probs=24.6
Q ss_pred ceEEEEECCCC------cEEEEEeCCCeEEEEEcC
Q 007283 536 RINCLAWSPNN------SMVATGSLDTCVIIYEID 564 (609)
Q Consensus 536 ~i~~l~~s~d~------~~l~s~s~D~~v~vw~~~ 564 (609)
.|.+++|||.| -+||.-..++.|.||.-.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 68899999954 378999999999999754
No 459
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=68.55 E-value=31 Score=26.14 Aligned_cols=42 Identities=24% Similarity=0.308 Sum_probs=25.1
Q ss_pred EeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEE
Q 007283 509 GDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATG 552 (609)
Q Consensus 509 ~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~ 552 (609)
+..+|.+.-||..+++..+ +..--..-+.+++|||+.+|+.+
T Consensus 33 ~~~~GRll~ydp~t~~~~v--l~~~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTV--LLDGLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp T---EEEEEEETTTTEEEE--EEEEESSEEEEEE-TTSSEEEEE
T ss_pred CCCCcCEEEEECCCCeEEE--ehhCCCccCeEEEcCCCCEEEEE
Confidence 3456778888887776432 22122346789999999977655
No 460
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=68.37 E-value=1.3e+02 Score=30.78 Aligned_cols=125 Identities=14% Similarity=0.193 Sum_probs=70.2
Q ss_pred EEcCCCCeeEEEecCCccEEEEEEeeCCC-------eEEEEecCCCeEEEEeCC-CC-ceeeeccCcccceEEEEEcC--
Q 007283 130 FMWDSGTNVGEFDGHSRRVLSCAFKPSRP-------FRIATCGEDFLVNFYEGP-PF-KFKLSHRGHSNFVNCVRFSP-- 198 (609)
Q Consensus 130 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-------~~i~t~~~d~~i~~~~~~-~~-~~~~~~~~h~~~v~~l~~s~-- 198 (609)
.+-+.|+.+-++.-|.+. -+.|.|+.. ..++.-+..+..++ |.+ .+ +... ..-.++++--.|+.
T Consensus 495 mDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrI-DPR~~gNKi~v--~esKdY~tKn~Fss~~ 569 (776)
T COG5167 495 MDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRI-DPRARGNKIKV--VESKDYKTKNKFSSGM 569 (776)
T ss_pred eecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEe-cccccCCceee--eeehhccccccccccc
Confidence 344556666677766654 356666532 12444444444333 211 11 1111 11122222222322
Q ss_pred --CCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283 199 --DGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS 263 (609)
Q Consensus 199 --dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~ 263 (609)
...++|.|+..|.|++||- -+....+.. ++....|..+..+.+|+++++.+. .++-+-|+.
T Consensus 570 tTesGyIa~as~kGDirLyDR-ig~rAKtal--P~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 570 TTESGYIAAASRKGDIRLYDR-IGKRAKTAL--PGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred cccCceEEEecCCCceeeehh-hcchhhhcC--cccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 2348999999999999983 333333332 355678999999999998877774 467777764
No 461
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.80 E-value=50 Score=33.79 Aligned_cols=96 Identities=18% Similarity=0.309 Sum_probs=58.2
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceE
Q 007283 447 RFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVK 526 (609)
Q Consensus 447 ~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~ 526 (609)
.+.|.-+.++|.|..++..+.+|.+-++--+. ......++.-+..|+|=.|+-+.+++.+.
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~r--wG~~s~~eDgk~~v~CRt~~i~~~~ftss----------------- 163 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKR--WGKNSEFEDGKSTVNCRTTPVAERFFTSS----------------- 163 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhh--cCccceecCCCceEEEEeecccceeeccC-----------------
Confidence 45678888999999999999999765542111 11112233333345554443333222211
Q ss_pred EeeecCCCCceEEEEECCCC---cEEEEEeCCCeEEEEEcCCCC
Q 007283 527 LKNMLYHTARINCLAWSPNN---SMVATGSLDTCVIIYEIDKPA 567 (609)
Q Consensus 527 ~~~~~~h~~~i~~l~~s~d~---~~l~s~s~D~~v~vw~~~~~~ 567 (609)
..-.+..++|+|+. .+|..-+.|.+|++|+.....
T Consensus 164 ------~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 164 ------TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred ------CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcc
Confidence 12235568888875 678888889999999986543
No 462
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=64.28 E-value=16 Score=20.48 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=17.4
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEE
Q 007283 450 VTASAIAPDGSEAIIGSQDGKLRVY 474 (609)
Q Consensus 450 ~~~~~~sp~g~~l~~gs~dg~i~iw 474 (609)
...++++++|+.+++-+....|++|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4556777888877777766666654
No 463
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=63.79 E-value=1.6e+02 Score=29.35 Aligned_cols=76 Identities=13% Similarity=0.140 Sum_probs=39.8
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeee-eeEE--E--ecCCCceEEEEEC--CC--CCEEEEEeCCCeEEEE
Q 007283 448 FPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLT-EEAV--L--EKHRGAVSVIRYS--PD--VSMFASGDVNREAIVW 518 (609)
Q Consensus 448 ~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~-~~~~--~--~~h~~~i~~v~~s--~~--~~~l~s~s~d~~v~iw 518 (609)
..+..+++......|..|=+|.-|.-|+.+...-. ...+ . ......|..|++- ++ |-+++|.-.+.+..+|
T Consensus 208 sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy 287 (381)
T PF02333_consen 208 SQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVY 287 (381)
T ss_dssp S-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEE
T ss_pred CcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEE
Confidence 34566666666667777766655555544322111 1111 1 1234556666652 34 3455565567789999
Q ss_pred EccCC
Q 007283 519 DRVSR 523 (609)
Q Consensus 519 d~~~~ 523 (609)
++...
T Consensus 288 ~r~~~ 292 (381)
T PF02333_consen 288 DREGP 292 (381)
T ss_dssp ESSTT
T ss_pred ecCCC
Confidence 97653
No 464
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=63.04 E-value=2.3e+02 Score=30.81 Aligned_cols=92 Identities=21% Similarity=0.378 Sum_probs=50.0
Q ss_pred cEEEEECCCCCEEEEEeCC--C-----cEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEE-CCCCcceEEEEE
Q 007283 60 ATVARFSPNGEWIASADVS--G-----TVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACG-DGKGKSLVRAFM 131 (609)
Q Consensus 60 v~~~~~sp~g~~las~~~d--~-----~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~~~~~~~~~~ 131 (609)
+..+.++|.+..++..... . .=.+|-.+... .....+...+..+.|+|||+.++... ++.. ..+++.
T Consensus 15 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~--~~~l~l 89 (620)
T COG1506 15 VSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT---VRLLTFGGGVSELRWSPDGSVLAFVSTDGGR--VAQLYL 89 (620)
T ss_pred ccCcccCCCCceeEEeeccccccccccccceEEEeccc---ccccccCCcccccccCCCCCEEEEEeccCCC--cceEEE
Confidence 4455667776666543322 1 12233221111 12334566788999999999999887 3332 233444
Q ss_pred cCCCCeeEEEecCCccEEEEEEeeCCCe
Q 007283 132 WDSGTNVGEFDGHSRRVLSCAFKPSRPF 159 (609)
Q Consensus 132 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 159 (609)
.+.+. .+..+...+....|+|++..
T Consensus 90 ~~~~g---~~~~~~~~v~~~~~~~~g~~ 114 (620)
T COG1506 90 VDVGG---LITKTAFGVSDARWSPDGDR 114 (620)
T ss_pred EecCC---ceeeeecccccceeCCCCCe
Confidence 33321 23344556667778887765
No 465
>PRK13615 lipoprotein LpqB; Provisional
Probab=62.73 E-value=2.1e+02 Score=30.35 Aligned_cols=139 Identities=12% Similarity=0.053 Sum_probs=76.4
Q ss_pred EEeecCCCCeEEEeCC-CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCC-CceeeEEEee
Q 007283 21 LISGHPKSNSILYTNG-RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHN-DHVLKKEFRV 98 (609)
Q Consensus 21 ~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~-~~~~~~~~~~ 98 (609)
..+.+++|..+++.++ ..+.+.......+ ..+++ ...+...|.++| .+=+...+...++..... +........-
T Consensus 338 s~avS~dg~~~A~v~~~~~l~vg~~~~~~~-~~~~~--~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v~v~~ 413 (557)
T PRK13615 338 AATLSADGRQAAVRNASGVWSVGDGDRDAV-LLDTR--PGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPVAVSW 413 (557)
T ss_pred cceEcCCCceEEEEcCCceEEEecCCCcce-eeccC--CccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEeeccc
Confidence 5677888888887764 4566655542222 22332 347888899988 554544433455555433 2221111222
Q ss_pred c-ccceeEEEECCCCCEEEEEECCCCcceEEE--EEcCCC--Cee----EEEecCCccEEEEEEeeCCCeEEEE
Q 007283 99 L-SGRIDDLQWSPDGLRIVACGDGKGKSLVRA--FMWDSG--TNV----GEFDGHSRRVLSCAFKPSRPFRIAT 163 (609)
Q Consensus 99 ~-~~~v~~~~~spdg~~l~~~~~~~~~~~~~~--~~~~~~--~~~----~~~~~h~~~v~~~~~~p~~~~~i~t 163 (609)
. .+.|..++.|+||.+++.+.+..+...+.+ ..-+.+ ..+ ..+......+.+++|..++...+++
T Consensus 414 ~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl~ 487 (557)
T PRK13615 414 TATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVATLT 487 (557)
T ss_pred cCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEEEEe
Confidence 2 357999999999999998764222212222 111333 122 1122223378899998888753443
No 466
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=59.95 E-value=2.1 Score=42.63 Aligned_cols=105 Identities=12% Similarity=0.166 Sum_probs=69.1
Q ss_pred ccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCcee-eeccC-cccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccc
Q 007283 146 RRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFK-LSHRG-HSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKI 223 (609)
Q Consensus 146 ~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~-~~~~~-h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~ 223 (609)
+....++|..+++..++.+-..+.+.+|+..+.... ..+.+ |.... +.|++.+..++.+...+.+.||+-.+...+
T Consensus 75 g~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~i 152 (615)
T KOG2247|consen 75 GKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRI 152 (615)
T ss_pred hhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH--HhhccCCccccccccccceEEEeccchhhh
Confidence 344456677777655555666778899986542211 11222 23322 678998888898988999999987776655
Q ss_pred cccCcCCC-CccceEEEEECCCCCeEEEEeCCCcE
Q 007283 224 GELSPEDG-HKGSVYAVSWSPDGKQVLTASADKSA 257 (609)
Q Consensus 224 ~~~~~~~~-h~~~V~~l~~spd~~~l~s~s~d~~i 257 (609)
... | |..+++++++.+.+..+ .++-|..+
T Consensus 153 iv~----Gkh~RRgtq~av~lEd~vi-l~dcd~~L 182 (615)
T KOG2247|consen 153 IVM----GKHQRRGTQIAVTLEDYVI-LCDCDNTL 182 (615)
T ss_pred hhh----cccccceeEEEecccceee-ecCcHHHH
Confidence 443 5 88999999999987544 33334433
No 467
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=59.65 E-value=1.8e+02 Score=28.49 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=35.4
Q ss_pred cEEEEEEeeCCCeEEEEecCC------CeEEEEeCCCCceeee------c---------cCcccceEEEEEcCCCCEEEE
Q 007283 147 RVLSCAFKPSRPFRIATCGED------FLVNFYEGPPFKFKLS------H---------RGHSNFVNCVRFSPDGSKFIS 205 (609)
Q Consensus 147 ~v~~~~~~p~~~~~i~t~~~d------~~i~~~~~~~~~~~~~------~---------~~h~~~v~~l~~s~dg~~l~s 205 (609)
...++++.+++.+ +++--.+ ..|.-++.. ++.... + .........|+++|||+.|.+
T Consensus 86 D~Egi~~~~~g~~-~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~ 163 (326)
T PF13449_consen 86 DPEGIAVPPDGSF-WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFA 163 (326)
T ss_pred ChhHeEEecCCCE-EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEE
Confidence 4557888677764 5554444 566666533 222111 1 123456889999999996666
Q ss_pred Ee
Q 007283 206 VS 207 (609)
Q Consensus 206 ~~ 207 (609)
+.
T Consensus 164 ~~ 165 (326)
T PF13449_consen 164 AM 165 (326)
T ss_pred EE
Confidence 54
No 468
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=58.72 E-value=52 Score=36.42 Aligned_cols=85 Identities=14% Similarity=0.175 Sum_probs=50.4
Q ss_pred eEEEeCC--CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEE-EeCCC---c--EEEEcCCCCceeeEEEeeccc
Q 007283 30 SILYTNG--RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIAS-ADVSG---T--VRIWGAHNDHVLKKEFRVLSG 101 (609)
Q Consensus 30 ~l~~~~~--~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las-~~~d~---~--i~vWd~~~~~~~~~~~~~~~~ 101 (609)
.|+|.+. ..+.+-|........+-..++.+|.+.+|||||+.||- .+..+ . |.+=++.+...-...+..-+.
T Consensus 320 kiAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~a 399 (912)
T TIGR02171 320 KLAFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENA 399 (912)
T ss_pred eEEEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccc
Confidence 4677653 36777776554443321346788999999999999996 55443 3 555566654321123444444
Q ss_pred ceeEEEECCCCCE
Q 007283 102 RIDDLQWSPDGLR 114 (609)
Q Consensus 102 ~v~~~~~spdg~~ 114 (609)
.|---...+.|..
T Consensus 400 aiprwrv~e~gdt 412 (912)
T TIGR02171 400 AIPRWRVLENGDT 412 (912)
T ss_pred cccceEecCCCCe
Confidence 5544455565543
No 469
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.56 E-value=1.1e+02 Score=35.31 Aligned_cols=137 Identities=13% Similarity=0.236 Sum_probs=78.7
Q ss_pred CCCcEEEEEecCCeeeeeEEEecCCCceEEEE--------ECCCCCEEEEEeCCCeEEEEEccCCceE--EeeecC----
Q 007283 467 QDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIR--------YSPDVSMFASGDVNREAIVWDRVSREVK--LKNMLY---- 532 (609)
Q Consensus 467 ~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~--------~s~~~~~l~s~s~d~~v~iwd~~~~~~~--~~~~~~---- 532 (609)
-|..|.+|++.++.- .....+-...|..|. |-|.=+++..-..-..+.++-+.-.+.. ...+..
T Consensus 97 iDn~L~lWny~~~~e--~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNE--LAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred eCCeEEEEEcCCCCc--cccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence 488999999976421 223334344444443 3344455555555566666643221111 001111
Q ss_pred --CCCceEEEEECCCCcEEEEEeCCCeEEEEEcC----CC-----CC--------------cceeEeccccCCeEEEEEc
Q 007283 533 --HTARINCLAWSPNNSMVATGSLDTCVIIYEID----KP-----AS--------------SRMTIKGAHLGGVYGLAFT 587 (609)
Q Consensus 533 --h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~----~~-----~~--------------~~~~~~~~h~~~v~~~~~s 587 (609)
-...|+|+....+|+.+.+|-.| .+|.+. .+ .. ....+.++|..+|..+...
T Consensus 175 ~~dg~~V~~I~~t~nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID 251 (1311)
T ss_pred ecCCceEEEEEeccCCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence 23468999988899987766555 455431 10 00 0112334677788888887
Q ss_pred CC-CeEEEEeCCCcEEEEEccC
Q 007283 588 DE-HSVVSSGEDACVRVWRLTP 608 (609)
Q Consensus 588 ~~-~~l~s~s~D~~i~~W~~~~ 608 (609)
+. ..+.+=+.-++|..|++.+
T Consensus 252 ~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cccceeeeeccCceEEEEEccC
Confidence 44 4567899999999999975
No 470
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=56.42 E-value=2.6e+02 Score=29.38 Aligned_cols=148 Identities=13% Similarity=0.142 Sum_probs=71.5
Q ss_pred EcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecC-CCceEEEEECCCC-CEEEEEeC--CCeEEEEEccCCceEEeee
Q 007283 455 IAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKH-RGAVSVIRYSPDV-SMFASGDV--NREAIVWDRVSREVKLKNM 530 (609)
Q Consensus 455 ~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h-~~~i~~v~~s~~~-~~l~s~s~--d~~v~iwd~~~~~~~~~~~ 530 (609)
...++..++.+..+|.|+...+...........-+. ....+++.+-.+| .++..||. |+.+..|. .........
T Consensus 218 ~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~--~~~l~~~~~ 295 (504)
T PF10433_consen 218 YDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQIS--LSNLEVLDS 295 (504)
T ss_dssp SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEE--SESEEEEEE
T ss_pred ecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEe--CCCcEEEEe
Confidence 356778899999999999988764331001111122 4455677776665 35555554 44455554 333322222
Q ss_pred cCCCCceEEEEECCC----Cc------EEEEEe---CCCeEEEEEcCCCCC--cceeE-eccccCCeEEEEEcC--CCeE
Q 007283 531 LYHTARINCLAWSPN----NS------MVATGS---LDTCVIIYEIDKPAS--SRMTI-KGAHLGGVYGLAFTD--EHSV 592 (609)
Q Consensus 531 ~~h~~~i~~l~~s~d----~~------~l~s~s---~D~~v~vw~~~~~~~--~~~~~-~~~h~~~v~~~~~s~--~~~l 592 (609)
...-++|..+++-+. .. .|++++ .+|++++..-..+.. ..... ..+ ...+|.+.... +.+|
T Consensus 296 ~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~l 374 (504)
T PF10433_consen 296 LPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPG-VTGIWTLKLSSSDHSYL 374 (504)
T ss_dssp E----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEEST-EEEEEEE-SSSSSBSEE
T ss_pred ccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCC-ceEEEEeeecCCCceEE
Confidence 334567888877421 11 444443 578899886432111 11111 112 45677777542 4566
Q ss_pred EEEeCCCcEEEEEc
Q 007283 593 VSSGEDACVRVWRL 606 (609)
Q Consensus 593 ~s~s~D~~i~~W~~ 606 (609)
+.+..+.+ ++..+
T Consensus 375 v~S~~~~T-~vl~~ 387 (504)
T PF10433_consen 375 VLSFPNET-RVLQI 387 (504)
T ss_dssp EEEESSEE-EEEEE
T ss_pred EEEcCCce-EEEEE
Confidence 65555444 34433
No 471
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=55.64 E-value=62 Score=24.53 Aligned_cols=43 Identities=26% Similarity=0.252 Sum_probs=26.1
Q ss_pred EeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEe
Q 007283 465 GSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGD 510 (609)
Q Consensus 465 gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s 510 (609)
+..+|.|.-||..++... ++..--.-.+.|+++||+++++.+-
T Consensus 33 ~~~~GRll~ydp~t~~~~---vl~~~L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETT---VLLDGLYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp T---EEEEEEETTTTEEE---EEEEEESSEEEEEE-TTSSEEEEEE
T ss_pred CCCCcCEEEEECCCCeEE---EehhCCCccCeEEEcCCCCEEEEEe
Confidence 445677888887766532 2222234678899999999887763
No 472
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=54.42 E-value=2.8e+02 Score=29.14 Aligned_cols=79 Identities=13% Similarity=0.260 Sum_probs=41.5
Q ss_pred CcEEEEEecccEEEee--CCeeeEEec--cCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEe---cCCCc
Q 007283 421 PELVLVSTDSGVVLLR--GAEVVSTIN--LRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLE---KHRGA 493 (609)
Q Consensus 421 ~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~---~h~~~ 493 (609)
...++.-+..+++++. ......... ....+.+.++. +..++.+..++.+..+.+..........-. .....
T Consensus 418 ~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 495 (504)
T PF10433_consen 418 DGRIVQVTPKGIRLIDLEDGKLTQEWKPPAGSIIVAASIN--DPQVLVALSGGELVYFELDDNKISVSDNDETILELDNE 495 (504)
T ss_dssp TTEEEEEESSEEEEEESSSTSEEEEEE-TTS---SEEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-
T ss_pred CCeEEEEecCeEEEEECCCCeEEEEEeCCCCCeEEEEEEC--CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCc
Confidence 4566666777777774 222322221 23445555444 466777888999999999876653221111 24678
Q ss_pred eEEEEECC
Q 007283 494 VSVIRYSP 501 (609)
Q Consensus 494 i~~v~~s~ 501 (609)
|.|+..+|
T Consensus 496 is~l~i~p 503 (504)
T PF10433_consen 496 ISCLSIEP 503 (504)
T ss_dssp EEEEE---
T ss_pred eEEEEeCC
Confidence 88888776
No 473
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=54.00 E-value=39 Score=35.98 Aligned_cols=79 Identities=22% Similarity=0.359 Sum_probs=52.6
Q ss_pred cceeecCCCccC-cCceeEEeecCCCCeEEEeC-CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcE
Q 007283 4 LAETYTCVPSTE-RGRGILISGHPKSNSILYTN-GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTV 81 (609)
Q Consensus 4 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i 81 (609)
|..|+-|...+- +-...+++.||.|+.++... ++++++|+....++..+.. ...+-..+.|...|- +++..|+.+
T Consensus 1 likt~~~s~~~k~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhgl--~~~tsdrr~ 77 (1636)
T KOG3616|consen 1 LIKTFDCSRDPKEDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHGL--VTATSDRRA 77 (1636)
T ss_pred CCccccccCCccccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccce--EEEeccchh
Confidence 356777776653 55566899999999988875 5789999987666643332 234455666777774 444446666
Q ss_pred EEEc
Q 007283 82 RIWG 85 (609)
Q Consensus 82 ~vWd 85 (609)
--|.
T Consensus 78 la~~ 81 (1636)
T KOG3616|consen 78 LAWK 81 (1636)
T ss_pred heee
Confidence 6674
No 474
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=53.53 E-value=2.3e+02 Score=27.89 Aligned_cols=54 Identities=11% Similarity=0.171 Sum_probs=28.5
Q ss_pred CCCCEEEEEeCC-----------CeEEEEEccCCceEEeeecCCCCceE-EEEE-CCCCcEEEEEeCC
Q 007283 501 PDVSMFASGDVN-----------REAIVWDRVSREVKLKNMLYHTARIN-CLAW-SPNNSMVATGSLD 555 (609)
Q Consensus 501 ~~~~~l~s~s~d-----------~~v~iwd~~~~~~~~~~~~~h~~~i~-~l~~-s~d~~~l~s~s~D 555 (609)
-++.+.+.|+.+ ..+..||..+.+...... ....... ..+. .-+++..+.|+.+
T Consensus 62 ~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~-~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 62 IDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT-RSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred ECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC-CCCCcccceeEEEEeCCEEEEEcCcC
Confidence 367777777753 246778877665533211 1111111 1111 3478888888764
No 475
>PHA02790 Kelch-like protein; Provisional
Probab=51.79 E-value=3e+02 Score=28.72 Aligned_cols=52 Identities=10% Similarity=0.093 Sum_probs=25.8
Q ss_pred EEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCC--CcEEEEcCCCC
Q 007283 38 SVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVS--GTVRIWGAHND 89 (609)
Q Consensus 38 ~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d--~~i~vWd~~~~ 89 (609)
.+..||..++.......-...........-+|++.+.|+.+ .++..||..++
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n 341 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDA 341 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCC
Confidence 46677776655332211111111111223467777777653 45777876544
No 476
>PLN02153 epithiospecifier protein
Probab=51.61 E-value=2.5e+02 Score=27.65 Aligned_cols=26 Identities=12% Similarity=0.210 Sum_probs=16.3
Q ss_pred CCCCEEEEEeCC-----------CeEEEEEccCCceE
Q 007283 501 PDVSMFASGDVN-----------REAIVWDRVSREVK 526 (609)
Q Consensus 501 ~~~~~l~s~s~d-----------~~v~iwd~~~~~~~ 526 (609)
-++++.+.|+.+ ..+.+||..+.+..
T Consensus 136 ~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~ 172 (341)
T PLN02153 136 DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV 172 (341)
T ss_pred ECCEEEEECCccCCCccCCCcccceEEEEECCCCeEe
Confidence 356666776654 24678887766553
No 477
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=51.42 E-value=3.2e+02 Score=30.64 Aligned_cols=118 Identities=16% Similarity=0.136 Sum_probs=0.0
Q ss_pred CCceeEEEEcC-CCCEEEEEeCCCcEEEEEe---cCCeeeeeEEEecCCCce------E----EEEECCCCCEEEEEeCC
Q 007283 447 RFPVTASAIAP-DGSEAIIGSQDGKLRVYSI---RGDTLTEEAVLEKHRGAV------S----VIRYSPDVSMFASGDVN 512 (609)
Q Consensus 447 ~~~~~~~~~sp-~g~~l~~gs~dg~i~iw~~---~~~~~~~~~~~~~h~~~i------~----~v~~s~~~~~l~s~s~d 512 (609)
+++...++|+| +...||+-...|.--||++ .............+.+.| . .|.|.++-..|+..+..
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~ 224 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS 224 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC
Q ss_pred CeEEEEEccCCceEE-eeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCC
Q 007283 513 REAIVWDRVSREVKL-KNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDK 565 (609)
Q Consensus 513 ~~v~iwd~~~~~~~~-~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~ 565 (609)
. +.++|+.+..... -........|..+.-+|+..-.+---+...|.+.++..
T Consensus 225 ~-l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 225 K-LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred c-eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
No 478
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=49.61 E-value=4.5e+02 Score=30.02 Aligned_cols=108 Identities=17% Similarity=0.171 Sum_probs=63.8
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEE--EEccCCceEEeee
Q 007283 453 SAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIV--WDRVSREVKLKNM 530 (609)
Q Consensus 453 ~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~i--wd~~~~~~~~~~~ 530 (609)
.|+.|.+.++.+| -...+|+|++-..++..+..++.-...|+.+.+ .+..+++|+..-.+.+ |+...+....-.-
T Consensus 939 ~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fad 1015 (1205)
T KOG1898|consen 939 GAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFAD 1015 (1205)
T ss_pred eEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEeC
Confidence 4566777655554 567899999976655433334434556777665 5677777776656654 4443333222111
Q ss_pred cCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcC
Q 007283 531 LYHTARINCLAWSPNNSMVATGSLDTCVIIYEID 564 (609)
Q Consensus 531 ~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~ 564 (609)
..-...|+++.+- |...+|.|+.-|.+.+-.++
T Consensus 1016 D~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1016 DPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred CCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 2233457777776 44447777777777776654
No 479
>PLN02193 nitrile-specifier protein
Probab=49.45 E-value=3.3e+02 Score=28.39 Aligned_cols=138 Identities=11% Similarity=0.108 Sum_probs=62.7
Q ss_pred CCCEEEEEeCC-----CcEEEEEecCCeeeeeEEEe--cCCCceEEEEECCCCCEEEEEeCCC-----eEEEEEccCCce
Q 007283 458 DGSEAIIGSQD-----GKLRVYSIRGDTLTEEAVLE--KHRGAVSVIRYSPDVSMFASGDVNR-----EAIVWDRVSREV 525 (609)
Q Consensus 458 ~g~~l~~gs~d-----g~i~iw~~~~~~~~~~~~~~--~h~~~i~~v~~s~~~~~l~s~s~d~-----~v~iwd~~~~~~ 525 (609)
++.+.+.|+.+ ..+..||..++.......+. .....-.++. .-++++.+.|+.++ .+..||+.+.+.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMA-ADEENVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEE-EECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence 34555555544 35777777665443211110 0000011111 23566677776543 466778766554
Q ss_pred EEeee----cCCCCceEEEEECCCCcEEEEEeCC----CeEEEEEcCCCCCcceeEec-ccc-CCeEEEEEcCCCeEEEE
Q 007283 526 KLKNM----LYHTARINCLAWSPNNSMVATGSLD----TCVIIYEIDKPASSRMTIKG-AHL-GGVYGLAFTDEHSVVSS 595 (609)
Q Consensus 526 ~~~~~----~~h~~~i~~l~~s~d~~~l~s~s~D----~~v~vw~~~~~~~~~~~~~~-~h~-~~v~~~~~s~~~~l~s~ 595 (609)
..... ......-..+.+ +++.++.++.+ ..+.+||..+.....+.... ... +...+++..++++++.|
T Consensus 307 ~~~~~~~~~~~~R~~~~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~G 384 (470)
T PLN02193 307 FHCSTPGDSFSIRGGAGLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFG 384 (470)
T ss_pred EeCCCCCCCCCCCCCcEEEEE--CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEEC
Confidence 32111 001111122222 67777777655 45788887653322111110 011 12223333366777778
Q ss_pred eCC
Q 007283 596 GED 598 (609)
Q Consensus 596 s~D 598 (609)
|.+
T Consensus 385 G~~ 387 (470)
T PLN02193 385 GEI 387 (470)
T ss_pred Ccc
Confidence 753
No 480
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=49.28 E-value=2.2e+02 Score=27.17 Aligned_cols=74 Identities=15% Similarity=0.210 Sum_probs=46.6
Q ss_pred eEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEe------CCCcEEEEeCCCCccccccCc-C-CCCccceEEEE
Q 007283 169 LVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVS------SDKKGIIYDGKTADKIGELSP-E-DGHKGSVYAVS 240 (609)
Q Consensus 169 ~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~------~d~~i~iwd~~~~~~~~~~~~-~-~~h~~~V~~l~ 240 (609)
-+.+||....+....-.+-.+.|+.+.|..+.++++.|. ....+..||..+... ..+.. . ..-.++|..+.
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTALT 95 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEEEE
Confidence 467788766666555555667899999987766666664 345677888776542 22221 0 12346788887
Q ss_pred ECC
Q 007283 241 WSP 243 (609)
Q Consensus 241 ~sp 243 (609)
+..
T Consensus 96 ~~~ 98 (281)
T PF12768_consen 96 FIS 98 (281)
T ss_pred eec
Confidence 743
No 481
>COG4246 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.19 E-value=1.3e+02 Score=27.91 Aligned_cols=146 Identities=18% Similarity=0.250 Sum_probs=68.5
Q ss_pred cceeEEEECCCCCEEEEEECCCCcceEEEEEcCC-CCee-------EEE---ecC------CccEEEEEEeeCCCeEEEE
Q 007283 101 GRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDS-GTNV-------GEF---DGH------SRRVLSCAFKPSRPFRIAT 163 (609)
Q Consensus 101 ~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~-~~~~-------~~~---~~h------~~~v~~~~~~p~~~~~i~t 163 (609)
+...+++|-|||+.++++.|...--..++ ..|. +... ..+ .+. .-.-..++.- +|. .+++
T Consensus 74 galSairf~~dG~~fiav~DtG~wfeg~i-~rDa~grl~Gl~dgr~~pm~d~~Gqpi~~K~e~DaEGLAvr-dG~-~~Vs 150 (340)
T COG4246 74 GALSAIRFLPDGSQFIAVTDTGHWFEGKI-QRDANGRLAGLTDGRLTPMRDLDGQPIQEKWEVDAEGLAVR-DGD-ALVS 150 (340)
T ss_pred cchheeEeccCCceeEEEeecCceEEEEE-EeccCCCcccccccceeecccCCCCCCcchhccccccceEe-cCc-eEEE
Confidence 46789999999988887765421111111 1121 1110 001 111 1112345554 444 5788
Q ss_pred ecCCCeEEEEeCCCCceee-----------eccCcccceEEEEEcCC-CC---EEEEEeCCCcEEEEeCCC----Ccccc
Q 007283 164 CGEDFLVNFYEGPPFKFKL-----------SHRGHSNFVNCVRFSPD-GS---KFISVSSDKKGIIYDGKT----ADKIG 224 (609)
Q Consensus 164 ~~~d~~i~~~~~~~~~~~~-----------~~~~h~~~v~~l~~s~d-g~---~l~s~~~d~~i~iwd~~~----~~~~~ 224 (609)
--.++.|-+|-.+++.... +.-.|+..+..++..|- |. -++++++.+....-+... +-...
T Consensus 151 fEr~hRI~iyp~~p~~~~~p~rqlp~~~Pa~eLr~N~G~Eaia~a~~~gp~aga~VVvsEks~d~~~nl~A~ilegP~kg 230 (340)
T COG4246 151 FERDHRIWIYPVPPFAGWGPPRQLPAPKPATELRDNGGLEAIAAAPVNGPLAGALVVVSEKSEDKAGNLSAAILEGPPKG 230 (340)
T ss_pred eeccceeEEeccCCccCCCCcccCCCCCchhhcccCCCeeeeeecCCCCCcccceEEEeecchhhhcchhHHHhhCCCcc
Confidence 7888888888654321111 11235666777777653 33 244555544332222111 11011
Q ss_pred ccCcCCCCccceEEEEECCCCCeEE
Q 007283 225 ELSPEDGHKGSVYAVSWSPDGKQVL 249 (609)
Q Consensus 225 ~~~~~~~h~~~V~~l~~spd~~~l~ 249 (609)
.+....+..-.|+.=+|-|++.++.
T Consensus 231 ~ftv~r~pdf~vtdgaFlP~gdlll 255 (340)
T COG4246 231 VFTVKRGPDFDVTDGAFLPDGDLLL 255 (340)
T ss_pred eeEeecCCCcccccccccCCcceee
Confidence 1111112233566777888886554
No 482
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=47.56 E-value=2.5e+02 Score=26.50 Aligned_cols=206 Identities=14% Similarity=0.104 Sum_probs=102.4
Q ss_pred eecCCCccCcCceeEEeecCCCCeEEEeCC-CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEc
Q 007283 7 TYTCVPSTERGRGILISGHPKSNSILYTNG-RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWG 85 (609)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd 85 (609)
++..+|... .|..++-.|||..-+...+ +.+==.|-.+++.....-+....--.+..-|||..-++-+.. -|.-.|
T Consensus 54 ~~fpvp~G~--ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~d 130 (353)
T COG4257 54 AEFPVPNGS--APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLD 130 (353)
T ss_pred ceeccCCCC--CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEec
Confidence 344455443 3457888888853222222 222223445555544333322223455677888766553332 344445
Q ss_pred CCCCceeeEEEee--cccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEE
Q 007283 86 AHNDHVLKKEFRV--LSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIAT 163 (609)
Q Consensus 86 ~~~~~~~~~~~~~--~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t 163 (609)
-++.+.....+.. .........|.++|..-++...+- -+ .+.|-.
T Consensus 131 pkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~-------------------yG--------rLdPa~------ 177 (353)
T COG4257 131 PKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGA-------------------YG--------RLDPAR------ 177 (353)
T ss_pred CcccceEEeecccccCCCcccceeeCCCccEEEeecccc-------------------ce--------ecCccc------
Confidence 5444433222221 134556677777775444422110 00 111211
Q ss_pred ecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECC
Q 007283 164 CGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSP 243 (609)
Q Consensus 164 ~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp 243 (609)
..+++|..+.+ ..-+.++..|||+...+.-.+..|...|..++.. ..+..-.+....-..+.-+|
T Consensus 178 ----~~i~vfpaPqG----------~gpyGi~atpdGsvwyaslagnaiaridp~~~~a-ev~p~P~~~~~gsRriwsdp 242 (353)
T COG4257 178 ----NVISVFPAPQG----------GGPYGICATPDGSVWYASLAGNAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDP 242 (353)
T ss_pred ----CceeeeccCCC----------CCCcceEECCCCcEEEEeccccceEEcccccCCc-ceecCCCcccccccccccCc
Confidence 12556654422 1235567889999777666667777777766532 12211112122234455567
Q ss_pred CCCeEEEEeCCCcEEEeecc
Q 007283 244 DGKQVLTASADKSAKVWDIS 263 (609)
Q Consensus 244 d~~~l~s~s~d~~i~iwd~~ 263 (609)
.|+.-+|-...+.+..+|..
T Consensus 243 ig~~wittwg~g~l~rfdPs 262 (353)
T COG4257 243 IGRAWITTWGTGSLHRFDPS 262 (353)
T ss_pred cCcEEEeccCCceeeEeCcc
Confidence 77777776666777777654
No 483
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=47.01 E-value=3.3e+02 Score=27.76 Aligned_cols=144 Identities=17% Similarity=0.197 Sum_probs=80.6
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCcee--eEE-EeecccceeEEEECC-----CCCEEEEEECCCCcceEEEEEcC--CCC-
Q 007283 68 NGEWIASADVSGTVRIWGAHNDHVL--KKE-FRVLSGRIDDLQWSP-----DGLRIVACGDGKGKSLVRAFMWD--SGT- 136 (609)
Q Consensus 68 ~g~~las~~~d~~i~vWd~~~~~~~--~~~-~~~~~~~v~~~~~sp-----dg~~l~~~~~~~~~~~~~~~~~~--~~~- 136 (609)
+...|+.||-.|.+||++....... ... -.....+|-.++..+ +...|+..- .+ ++ .++... .+.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLh-P~--kl-~vY~v~~~~g~~ 111 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLH-PR--KL-SVYSVSLVDGTV 111 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEec-CC--EE-EEEEEEecCCCc
Confidence 3468899999999999988543311 011 123456777766443 223344321 11 11 122221 111
Q ss_pred ------eeEEEecCCc--cEEEEEEee----CCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEE
Q 007283 137 ------NVGEFDGHSR--RVLSCAFKP----SRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFI 204 (609)
Q Consensus 137 ------~~~~~~~h~~--~v~~~~~~p----~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 204 (609)
.+..+-.|.- ....+.+-| .+...|++-+-||.+.+++.+.....+.+.+ .---..+.|.|.-+.|+
T Consensus 112 ~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfv 190 (418)
T PF14727_consen 112 EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFV 190 (418)
T ss_pred ccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEE
Confidence 1122223321 222232222 2245688899999999999887665555544 22223567888888899
Q ss_pred EEeCCCcEEEEe
Q 007283 205 SVSSDKKGIIYD 216 (609)
Q Consensus 205 s~~~d~~i~iwd 216 (609)
+++.+..+.-|.
T Consensus 191 t~sss~~l~~Yk 202 (418)
T PF14727_consen 191 TASSSWTLECYK 202 (418)
T ss_pred EecCceeEEEec
Confidence 999888888875
No 484
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=46.95 E-value=48 Score=22.39 Aligned_cols=19 Identities=16% Similarity=0.233 Sum_probs=16.0
Q ss_pred CcEEEEECCCCCEEEEEeC
Q 007283 59 PATVARFSPNGEWIASADV 77 (609)
Q Consensus 59 ~v~~~~~sp~g~~las~~~ 77 (609)
.+..+++.|||++|+.|..
T Consensus 2 ~~~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYV 20 (55)
T ss_pred ceEEEEECCCCcEEEEEEe
Confidence 4678899999999998864
No 485
>PRK13613 lipoprotein LpqB; Provisional
Probab=46.68 E-value=4.1e+02 Score=28.71 Aligned_cols=188 Identities=12% Similarity=0.095 Sum_probs=92.1
Q ss_pred eEEeecCCCCeEEEeCC--CEEEEEeCCCCcc-----ccccccCCCCcEEEEECCCCCEEEEEeC--CC--cEEEEcCCC
Q 007283 20 ILISGHPKSNSILYTNG--RSVIILDLSNPLQ-----VSIYGEHAYPATVARFSPNGEWIASADV--SG--TVRIWGAHN 88 (609)
Q Consensus 20 ~~~~~~~~~~~l~~~~~--~~~~i~~~~~~~~-----~~~~~~h~~~v~~~~~sp~g~~las~~~--d~--~i~vWd~~~ 88 (609)
...+.+++++.++...+ ..+++-.+..+.. ...+.+ ...+...|.++|. +=+... ++ .+++..- +
T Consensus 366 ~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~--~~Lt~PS~d~~g~-vWtvd~~~~~~~vl~v~~~-~ 441 (599)
T PRK13613 366 RRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTAD--GRLTSPSWDGRGD-LWVVDRDPADPRLLWLLQG-D 441 (599)
T ss_pred cceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeecc--CcccCCcCcCCCC-EEEecCCCCCceEEEEEcC-C
Confidence 36677888888877653 4566655533322 112332 3478888888884 434322 22 2566543 3
Q ss_pred CceeeEEEeeccc-ceeEEEECCCCCEEEEEECCCCcceEEE--EEcC-CCC-eeE---EEecCCccEEEEEEeeCCCeE
Q 007283 89 DHVLKKEFRVLSG-RIDDLQWSPDGLRIVACGDGKGKSLVRA--FMWD-SGT-NVG---EFDGHSRRVLSCAFKPSRPFR 160 (609)
Q Consensus 89 ~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~~~~~~--~~~~-~~~-~~~---~~~~h~~~v~~~~~~p~~~~~ 160 (609)
++..........+ .|..++.|+||.+++.+.+..+...+.+ ..-+ .+. .+. .+......+.+++|..++..
T Consensus 442 G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W~~~~sL- 520 (599)
T PRK13613 442 GEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSWAGDSQL- 520 (599)
T ss_pred CcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeEEcCCCEE-
Confidence 3322111122333 7999999999999998765322211211 1111 222 111 12222335889999988864
Q ss_pred EEEe-cCCCeEEEEe--CCCCceeeeccCcccceEEEEEcCCCC-EEEEEeCCCcE
Q 007283 161 IATC-GEDFLVNFYE--GPPFKFKLSHRGHSNFVNCVRFSPDGS-KFISVSSDKKG 212 (609)
Q Consensus 161 i~t~-~~d~~i~~~~--~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~~d~~i 212 (609)
++.+ ..++...+|. ..-........+....+..++-..+.+ .|+.+..++.+
T Consensus 521 ~Vlg~~~~~~~~v~~v~vdG~~~~~~~~~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 521 VVLGREEGGVQQARYVQVDGSTPPASAPAAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred EEEeccCCCCcceEEEecCCcCcccccccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 3323 2332333342 221111111122334455566665554 33432444443
No 486
>PRK13614 lipoprotein LpqB; Provisional
Probab=46.58 E-value=4e+02 Score=28.55 Aligned_cols=139 Identities=16% Similarity=0.268 Sum_probs=72.2
Q ss_pred eEEeecCCCCeEEEeCCCEEEEE--eCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCC--cEEEEcCC-CCcee--
Q 007283 20 ILISGHPKSNSILYTNGRSVIIL--DLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSG--TVRIWGAH-NDHVL-- 92 (609)
Q Consensus 20 ~~~~~~~~~~~l~~~~~~~~~i~--~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~--~i~vWd~~-~~~~~-- 92 (609)
...+.+++|+.+++.++..-.+| .... .....+.+. ..+...|.++| .+=+...+. .|....-. +++..
T Consensus 346 ~s~avS~~g~~~A~~~~~~~~l~~~~~g~-~~~~~~~g~--~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~~~~ 421 (573)
T PRK13614 346 ASPAESPVSQTVAFLNGSRTTLYTVSPGQ-PARALTSGS--TLTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEGAQA 421 (573)
T ss_pred cceeecCCCceEEEecCCCcEEEEecCCC-cceeeecCC--CccCCcccCCC-CEEEeeCCCCceEEEEecCCCcccccc
Confidence 35677888888887765332333 3222 222234443 47888888888 444444333 44333321 11100
Q ss_pred ---eEEEeeccc-ceeEEEECCCCCEEEEEE--CCCCc-ceEEEEEcCCCCe--eE---EEecCCccEEEEEEeeCCCeE
Q 007283 93 ---KKEFRVLSG-RIDDLQWSPDGLRIVACG--DGKGK-SLVRAFMWDSGTN--VG---EFDGHSRRVLSCAFKPSRPFR 160 (609)
Q Consensus 93 ---~~~~~~~~~-~v~~~~~spdg~~l~~~~--~~~~~-~~~~~~~~~~~~~--~~---~~~~h~~~v~~~~~~p~~~~~ 160 (609)
.....-..+ .|..++.|+||.+++.+. +++.. .+..+---..+.. +. .+ +....+.+++|..++...
T Consensus 422 ~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~-~~~~~~~sl~W~~~~sl~ 500 (573)
T PRK13614 422 PTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITL-AADSDADTGAWVGDSTVV 500 (573)
T ss_pred cceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceec-ccCCCcceeEEcCCCEEE
Confidence 111222334 499999999999999876 44321 1111111112321 11 11 234578899998888754
Q ss_pred EEE
Q 007283 161 IAT 163 (609)
Q Consensus 161 i~t 163 (609)
+.+
T Consensus 501 V~~ 503 (573)
T PRK13614 501 VTK 503 (573)
T ss_pred EEe
Confidence 443
No 487
>PRK13614 lipoprotein LpqB; Provisional
Probab=46.53 E-value=4e+02 Score=28.54 Aligned_cols=146 Identities=11% Similarity=0.060 Sum_probs=78.4
Q ss_pred cCCC-CcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcC
Q 007283 55 EHAY-PATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWD 133 (609)
Q Consensus 55 ~h~~-~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 133 (609)
++.+ .+..++.|++|+.+|..+.|+ -++|-...++.....++ ......-.|.++| .+=++.++....++++. .
T Consensus 339 g~~~~~~~s~avS~~g~~~A~~~~~~-~~l~~~~~g~~~~~~~~--g~~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~--~ 412 (573)
T PRK13614 339 SVAGLGPASPAESPVSQTVAFLNGSR-TTLYTVSPGQPARALTS--GSTLTRPSFSPQD-WVWTAGPGGNGRIVAYR--P 412 (573)
T ss_pred CcCcccccceeecCCCceEEEecCCC-cEEEEecCCCcceeeec--CCCccCCcccCCC-CEEEeeCCCCceEEEEe--c
Confidence 4444 688999999999999887766 34553332322211122 2246667788877 33344444433334322 1
Q ss_pred CCC-e-------eEEEecCC-ccEEEEEEeeCCCeEEEEecCCCe--EEEEe---CCCCc---ee--eeccCcccceEEE
Q 007283 134 SGT-N-------VGEFDGHS-RRVLSCAFKPSRPFRIATCGEDFL--VNFYE---GPPFK---FK--LSHRGHSNFVNCV 194 (609)
Q Consensus 134 ~~~-~-------~~~~~~h~-~~v~~~~~~p~~~~~i~t~~~d~~--i~~~~---~~~~~---~~--~~~~~h~~~v~~l 194 (609)
.+. . .-...... ..|..+..+++|-..++....++. +.+-- ...+. +. ..+ +....+.++
T Consensus 413 ~g~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~-~~~~~~~sl 491 (573)
T PRK13614 413 TGVAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITL-AADSDADTG 491 (573)
T ss_pred CCCcccccccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceec-ccCCCccee
Confidence 111 0 00111222 349999999999754444434443 54432 12222 11 112 334578899
Q ss_pred EEcCCCCEEEEEe
Q 007283 195 RFSPDGSKFISVS 207 (609)
Q Consensus 195 ~~s~dg~~l~s~~ 207 (609)
.|..++.+++.+.
T Consensus 492 ~W~~~~sl~V~~~ 504 (573)
T PRK13614 492 AWVGDSTVVVTKA 504 (573)
T ss_pred EEcCCCEEEEEec
Confidence 9999988655543
No 488
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=45.23 E-value=3.3e+02 Score=27.27 Aligned_cols=55 Identities=15% Similarity=0.173 Sum_probs=27.8
Q ss_pred CCCCEEEEEeCC-----------CeEEEEEccCCceEEeeecCCCCceEEEEEC-CCCcEEEEEeCC
Q 007283 501 PDVSMFASGDVN-----------REAIVWDRVSREVKLKNMLYHTARINCLAWS-PNNSMVATGSLD 555 (609)
Q Consensus 501 ~~~~~l~s~s~d-----------~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s-~d~~~l~s~s~D 555 (609)
-++.+.+.|+.+ ..+..||..+.+............--..+.. -++++.+.|+.+
T Consensus 83 ~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 83 IDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred ECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 356777777653 2467788776654332110011111111222 478888888754
No 489
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=43.35 E-value=4.3e+02 Score=28.04 Aligned_cols=61 Identities=16% Similarity=0.117 Sum_probs=34.7
Q ss_pred CEEEEEeCCCcEEEEeCCCCccccccCcCCCC-ccce-------EEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283 201 SKFISVSSDKKGIIYDGKTADKIGELSPEDGH-KGSV-------YAVSWSPDGKQVLTASADKSAKVWDIS 263 (609)
Q Consensus 201 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~V-------~~l~~spd~~~l~s~s~d~~i~iwd~~ 263 (609)
..+..++.++.+.-.|.++++.+......... ...+ ..+++ .+..++.++.|+.+.-.|..
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~ 138 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAK 138 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECC
Confidence 35566667778888888888876654321100 0000 01122 23456677788888888875
No 490
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=42.20 E-value=57 Score=34.85 Aligned_cols=67 Identities=13% Similarity=0.240 Sum_probs=40.7
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEE
Q 007283 492 GAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYE 562 (609)
Q Consensus 492 ~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~ 562 (609)
..++++.-.|.|+.++++..|+++++|+...+... + +-.-..+-..+-|...| |+++..|..+.-|.
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qs-k-i~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQS-K-ICEEAKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchh-h-hhhhcCCccceeeeccc--eEEEeccchhheee
Confidence 34667777899999999999999999997654321 0 01111222334454444 44555555555554
No 491
>PLN02153 epithiospecifier protein
Probab=41.80 E-value=3.5e+02 Score=26.58 Aligned_cols=64 Identities=17% Similarity=0.203 Sum_probs=33.0
Q ss_pred CCCEEEEEeCC-----CeEEEEEccCCceEEee-ec---CCCCceEEEEECCCCcEEEEEeCC-----------CeEEEE
Q 007283 502 DVSMFASGDVN-----REAIVWDRVSREVKLKN-ML---YHTARINCLAWSPNNSMVATGSLD-----------TCVIIY 561 (609)
Q Consensus 502 ~~~~l~s~s~d-----~~v~iwd~~~~~~~~~~-~~---~h~~~i~~l~~s~d~~~l~s~s~D-----------~~v~vw 561 (609)
++++++.|+.+ ..+.+||..+.+..... +. ....+....+..-++++++.|+.+ ..|.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 56666777643 24678887766543211 10 011121222223367777777754 246778
Q ss_pred EcCC
Q 007283 562 EIDK 565 (609)
Q Consensus 562 ~~~~ 565 (609)
|..+
T Consensus 165 d~~~ 168 (341)
T PLN02153 165 NIAD 168 (341)
T ss_pred ECCC
Confidence 8654
No 492
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=41.27 E-value=3.3e+02 Score=26.04 Aligned_cols=80 Identities=15% Similarity=0.210 Sum_probs=52.3
Q ss_pred EEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEe------CCCcEEEEcCCCCceeeEEEee-----cccceeEE
Q 007283 38 SVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASAD------VSGTVRIWGAHNDHVLKKEFRV-----LSGRIDDL 106 (609)
Q Consensus 38 ~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~------~d~~i~vWd~~~~~~~~~~~~~-----~~~~v~~~ 106 (609)
.+-+||..+.+....-.+=.+.|+.+.|..+.++++.|. ....+-.||..+..- ..+.. ..++|.++
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w--~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW--SSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee--eecCCcccccCCCcEEEE
Confidence 566889877666554445567899999998888888875 345688899877542 12222 24678877
Q ss_pred EECC-CCCEEEEEE
Q 007283 107 QWSP-DGLRIVACG 119 (609)
Q Consensus 107 ~~sp-dg~~l~~~~ 119 (609)
.+.. |+..+.+.|
T Consensus 95 ~~~~~d~~~~~~aG 108 (281)
T PF12768_consen 95 TFISNDGSNFWVAG 108 (281)
T ss_pred EeeccCCceEEEec
Confidence 7754 444455443
No 493
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=39.93 E-value=70 Score=17.96 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=18.3
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEE
Q 007283 449 PVTASAIAPDGSEAIIGSQDGKLRVYS 475 (609)
Q Consensus 449 ~~~~~~~sp~g~~l~~gs~dg~i~iw~ 475 (609)
.+.+++.. ..+++++..-+-+|+|.
T Consensus 3 ~i~aia~g--~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAG--DSWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEcc--CCEEEEEeCCCeEEecC
Confidence 35666655 35888888889999873
No 494
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=39.51 E-value=88 Score=19.00 Aligned_cols=29 Identities=14% Similarity=0.021 Sum_probs=18.3
Q ss_pred eCCCeEEEEecCCCeEEEEeCCCCceeee
Q 007283 155 PSRPFRIATCGEDFLVNFYEGPPFKFKLS 183 (609)
Q Consensus 155 p~~~~~i~t~~~d~~i~~~~~~~~~~~~~ 183 (609)
|++..++++...++.+.++|..+.+....
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~ 29 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIAT 29 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEE
Confidence 45565566666677788888766554433
No 495
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=38.21 E-value=62 Score=24.34 Aligned_cols=29 Identities=17% Similarity=0.452 Sum_probs=0.0
Q ss_pred EEEEECCCCCEEEEEe-CCCcEEEEcCCCC
Q 007283 61 TVARFSPNGEWIASAD-VSGTVRIWGAHND 89 (609)
Q Consensus 61 ~~~~~sp~g~~las~~-~d~~i~vWd~~~~ 89 (609)
+.|+++|++++|..++ ..+.|.++.....
T Consensus 57 NGI~~s~~~k~lyVa~~~~~~I~vy~~~~~ 86 (86)
T PF01731_consen 57 NGIAISPDKKYLYVASSLAHSIHVYKRHKD 86 (86)
T ss_pred ceEEEcCCCCEEEEEeccCCeEEEEEecCC
No 496
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=37.65 E-value=3.5e+02 Score=25.43 Aligned_cols=155 Identities=12% Similarity=0.034 Sum_probs=86.2
Q ss_pred ceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecC-CccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCce
Q 007283 102 RIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGH-SRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKF 180 (609)
Q Consensus 102 ~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~ 180 (609)
-...+.|..||..+.++|. .+.+.++.++.++++.+....-. ...-..++...+ .++.-.=..+...+||..+++.
T Consensus 46 FTQGL~~~~~g~LyESTG~-yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGL-YGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp EEEEEEEEETTEEEEEECS-TTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEESSSSEEEEEETTTTEE
T ss_pred cCccEEecCCCEEEEeCCC-CCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEecCCeEEEEccccceE
Confidence 3567889888888888875 34677888888888765443322 223334554433 2333345667788999988877
Q ss_pred eeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCC--CccceEEEEECCCCCeEEEEeCCCcEE
Q 007283 181 KLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDG--HKGSVYAVSWSPDGKQVLTASADKSAK 258 (609)
Q Consensus 181 ~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--h~~~V~~l~~spd~~~l~s~s~d~~i~ 258 (609)
...+.-. ..=..++ .||+.|+.......+..+|+.+.+....+..... .-..++-+.+. +|...|-.-....|.
T Consensus 123 ~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~ 198 (264)
T PF05096_consen 123 IGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIV 198 (264)
T ss_dssp EEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEE
T ss_pred EEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEE
Confidence 6655321 1123333 5777777777777889999887766555432211 11234555554 455454444444444
Q ss_pred Eeecc
Q 007283 259 VWDIS 263 (609)
Q Consensus 259 iwd~~ 263 (609)
..|+.
T Consensus 199 ~Idp~ 203 (264)
T PF05096_consen 199 RIDPE 203 (264)
T ss_dssp EEETT
T ss_pred EEeCC
Confidence 44543
No 497
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=37.55 E-value=8.4e+02 Score=29.74 Aligned_cols=134 Identities=13% Similarity=0.105 Sum_probs=69.8
Q ss_pred EEeCCCcEEEEEecCCeeeeeE--------------EEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEee
Q 007283 464 IGSQDGKLRVYSIRGDTLTEEA--------------VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKN 529 (609)
Q Consensus 464 ~gs~dg~i~iw~~~~~~~~~~~--------------~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~ 529 (609)
.|-.||.|+-||-.+....... .+--..+.|..+..+|...-++=|...- +-+=-..+.-..-..
T Consensus 618 v~L~~G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~~-~a~~~~r~~~e~G~~ 696 (1774)
T PF11725_consen 618 VGLQDGKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNNV-FALPQRRNKVELGDA 696 (1774)
T ss_pred eeeccceEeeecCcchhhhhccCcCHHHHhccccCCceEecCCceeeeecccCCCccccCCCcc-cccccccCCCCCCcc
Confidence 4556899999986443221100 0111345677777777655444332111 100000000000011
Q ss_pred ecC-CCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEcCCCeEEEEeCCCcE
Q 007283 530 MLY-HTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACV 601 (609)
Q Consensus 530 ~~~-h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~D~~i 601 (609)
+.+ -...|++++.-.+ +.+++-+..|.+.++. .... .......+-.+.|.+++...++.|..--.+|.+
T Consensus 697 l~Gl~~~~i~a~Avv~~-~~fvald~qg~lt~h~-k~g~-p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~L 766 (1774)
T PF11725_consen 697 LEGLEDRVITAFAVVND-NKFVALDDQGDLTAHQ-KPGR-PVPLSRPGLSGEIKDLALDEKQNLYALTSTGEL 766 (1774)
T ss_pred ccCCCcCcceeEEEEcC-CceEEeccCCcccccc-CCCC-CccCCCCCCCcchhheeeccccceeEecCCCce
Confidence 211 2456899998755 4456788889999887 3222 222222345788999998866666666666654
No 498
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=37.06 E-value=2.1e+02 Score=31.97 Aligned_cols=77 Identities=17% Similarity=0.028 Sum_probs=46.5
Q ss_pred cEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEE-EeCCC-----eEEEEEccCCceEEeeecCCCCceEEEEEC
Q 007283 470 KLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFAS-GDVNR-----EAIVWDRVSREVKLKNMLYHTARINCLAWS 543 (609)
Q Consensus 470 ~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s-~s~d~-----~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s 543 (609)
.|.+-|..+.... .+...+..+|.+-+|||||+++|- .+.++ .|++-|+.+....+..+.--+..|-.-.+.
T Consensus 330 ~L~~~D~dG~n~~--~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~ 407 (912)
T TIGR02171 330 NLAYIDYTKGASR--AVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVL 407 (912)
T ss_pred eEEEEecCCCCce--EEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEec
Confidence 5666666544321 121456778888999999999997 55555 477888766543322233335555555556
Q ss_pred CCCcE
Q 007283 544 PNNSM 548 (609)
Q Consensus 544 ~d~~~ 548 (609)
++|..
T Consensus 408 e~gdt 412 (912)
T TIGR02171 408 ENGDT 412 (912)
T ss_pred CCCCe
Confidence 65543
No 499
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=36.92 E-value=13 Score=19.92 Aligned_cols=8 Identities=50% Similarity=1.045 Sum_probs=6.1
Q ss_pred EECCCCCE
Q 007283 64 RFSPNGEW 71 (609)
Q Consensus 64 ~~sp~g~~ 71 (609)
.|||+|++
T Consensus 7 ~FSp~Grl 14 (23)
T PF10584_consen 7 TFSPDGRL 14 (23)
T ss_dssp SBBTTSSB
T ss_pred eECCCCeE
Confidence 37888876
No 500
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=36.26 E-value=1.5e+02 Score=27.57 Aligned_cols=60 Identities=20% Similarity=0.215 Sum_probs=32.9
Q ss_pred EEcCCCCEEEEEeC-C--CcEEEEeCCC---CccccccCcCCCCccceEEEEECCCCCeEEEEeCC
Q 007283 195 RFSPDGSKFISVSS-D--KKGIIYDGKT---ADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASAD 254 (609)
Q Consensus 195 ~~s~dg~~l~s~~~-d--~~i~iwd~~~---~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d 254 (609)
.|.+||++|.+|+. + ..+++++... ...+......-.....=.++.--|||+.|+.|+.+
T Consensus 73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSN 138 (243)
T ss_pred CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcC
Confidence 46789999988875 2 3577777544 11111100000112223344445789988888776
Done!