BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007288
         (609 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225450537|ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570 [Vitis vinifera]
          Length = 607

 Score =  893 bits (2308), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/610 (68%), Positives = 508/610 (83%), Gaps = 4/610 (0%)

Query: 1   MRTKRLLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEG 60
           M T++LLS   T H H IP I++ S+Q V+  +   +PP IPKGPS+LAT LIKSYF +G
Sbjct: 1   MSTRKLLS---TTHFHPIPLIVRNSIQLVQNCTTPPNPPFIPKGPSVLATTLIKSYFGKG 57

Query: 61  LIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLK 120
           LI EARTLFDEMPERDVV+WTVMIAGYTS N H  AW VF EM+  E++PNAFT+SSVLK
Sbjct: 58  LIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEMMNEELDPNAFTISSVLK 117

Query: 121 ACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDV 180
           ACKGMK LS   LVHG+AIK GL+G IYV+N+LMD+YATCC+SMD+A +VF  +  KN+V
Sbjct: 118 ACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACMVFRGIHLKNEV 177

Query: 181 SWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAV 240
           SWTTLI GY H  +GYGGL VF++MLLE VE+NP+SFSIAVRAC S G  +FG+ +HAAV
Sbjct: 178 SWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAV 237

Query: 241 IKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLN 300
            KHGF SNLPVMNSILDMYCR  C S+AN+YF EM ++DLITWNT+IAGYE+S  +E L 
Sbjct: 238 TKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAGYERSNPTESLY 297

Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360
           +FS M+SE FSPNCFTFTSI+AACATLA L+CGQQ+H  I+RRGLDGNLAL+NALIDMY+
Sbjct: 298 VFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGNLALSNALIDMYS 357

Query: 361 KCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420
           KCGNI+DS ++F  MS RDLV+WT+MMIGYG HG+G+EA+ELFD+MV+SG+RPDR+VFMA
Sbjct: 358 KCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMA 417

Query: 421 VLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
           +L+ACSHAGLVDEGL+YFK M  DYN++P++EIYGCVVDLLGRAG+V+EAYELI+SMPFK
Sbjct: 418 ILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEAYELIESMPFK 477

Query: 480 PDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFR 539
           PDE VWGP LGACK H  PNLGKLAA R+LDL+P+M GTY++LSNIYAA+GKW EFA+ R
Sbjct: 478 PDECVWGPFLGACKAHTFPNLGKLAAHRILDLRPHMAGTYVMLSNIYAADGKWGEFARLR 537

Query: 540 KIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDID 599
           K+M+ MG+KKE G SW+EV + V  F+  D++GS  + +Y VLE LI HM E+ Y PD+D
Sbjct: 538 KLMKRMGNKKETGRSWVEVGNHVYSFVVGDEVGSKIEGIYQVLENLIGHMKESGYVPDLD 597

Query: 600 CLIHDLEGET 609
           CLI+DLE  T
Sbjct: 598 CLIYDLEDGT 607


>gi|296089801|emb|CBI39620.3| unnamed protein product [Vitis vinifera]
          Length = 591

 Score =  848 bits (2191), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/610 (65%), Positives = 492/610 (80%), Gaps = 20/610 (3%)

Query: 1   MRTKRLLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEG 60
           M T++LLS   T H H IP I++ S+Q V+  +   +PP IPKGPS+LAT LIKSYF +G
Sbjct: 1   MSTRKLLS---TTHFHPIPLIVRNSIQLVQNCTTPPNPPFIPKGPSVLATTLIKSYFGKG 57

Query: 61  LIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLK 120
           LI EA                +MIAGYTS N H  AW VF EM+  E++PNAFT+SSVLK
Sbjct: 58  LIGEA----------------LMIAGYTSCNNHTHAWMVFCEMMNEELDPNAFTISSVLK 101

Query: 121 ACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDV 180
           ACKGMK LS   LVHG+AIK GL+G IYV+N+LMD+YATCC+SMD+A +VF  +  KN+V
Sbjct: 102 ACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACMVFRGIHLKNEV 161

Query: 181 SWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAV 240
           SWTTLI GY H  +GYGGL VF++MLLE VE+NP+SFSIAVRAC S G  +FG+ +HAAV
Sbjct: 162 SWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAV 221

Query: 241 IKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLN 300
            KHGF SNLPVMNSILDMYCR  C S+AN+YF EM ++DLITWNT+IAGYE+S  +E L 
Sbjct: 222 TKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAGYERSNPTESLY 281

Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360
           +FS M+SE FSPNCFTFTSI+AACATLA L+CGQQ+H  I+RRGLDGNLAL+NALIDMY+
Sbjct: 282 VFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGNLALSNALIDMYS 341

Query: 361 KCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420
           KCGNI+DS ++F  MS RDLV+WT+MMIGYG HG+G+EA+ELFD+MV+SG+RPDR+VFMA
Sbjct: 342 KCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMA 401

Query: 421 VLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
           +L+ACSHAGLVDEGL+YFK M  DYN++P++EIYGCVVDLLGRAG+V+EAYELI+SMPFK
Sbjct: 402 ILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEAYELIESMPFK 461

Query: 480 PDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFR 539
           PDE VWGP LGACK H  PNLGKLAA R+LDL+P+M GTY++LSNIYAA+GKW EFA+ R
Sbjct: 462 PDECVWGPFLGACKAHTFPNLGKLAAHRILDLRPHMAGTYVMLSNIYAADGKWGEFARLR 521

Query: 540 KIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDID 599
           K+M+ MG+KKE G SW+EV + V  F+  D++GS  + +Y VLE LI HM E+ Y PD+D
Sbjct: 522 KLMKRMGNKKETGRSWVEVGNHVYSFVVGDEVGSKIEGIYQVLENLIGHMKESGYVPDLD 581

Query: 600 CLIHDLEGET 609
           CLI+DLE  T
Sbjct: 582 CLIYDLEDGT 591


>gi|449435950|ref|XP_004135757.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 606

 Score =  814 bits (2102), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/599 (64%), Positives = 480/599 (80%), Gaps = 1/599 (0%)

Query: 10  AATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLF 69
           A++ H H IP I++ SLQ +  S++QS+PP  P+GPS+ ATNLIKSYFD+GL  EA  LF
Sbjct: 7   ASSPHFHPIPLIVRNSLQWISNSTLQSNPPFTPEGPSVWATNLIKSYFDKGLTREACNLF 66

Query: 70  DEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLS 129
           +E+PERDVV+WT MI G+TS N ++QAWT+F EM+R+EV PNAFT+SSVLKACKGMK+LS
Sbjct: 67  NEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQPNAFTMSSVLKACKGMKALS 126

Query: 130 NAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGY 189
             AL H +A K G++ S+YV+N+L+D+YA  C +MD+A  VFND+  K  VSWTTLI G+
Sbjct: 127 CGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDIPLKTAVSWTTLIAGF 186

Query: 190 AHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNL 249
            H G+GY GL  F++MLLE V  N +SFSIA RACAS    S GK IHAAV K+G   + 
Sbjct: 187 THRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDA 246

Query: 250 PVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSER 309
           PVMNSILDMYCR + L DA + F E+TEK+LITWNT+IAGYE+S SSE L++F +M SE 
Sbjct: 247 PVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGYERSDSSESLSLFFQMGSEG 306

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
           + PNCFTFTSI AACA LA LSCGQQVH GIVRRG D N+AL N+LIDMYAKCG+ISDS 
Sbjct: 307 YKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCGSISDSH 366

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
           K+F +M  RDLV+WT+MMIGYGAHG+GKEA++LFDEMV+SG++PDRIVFM VL  CSHAG
Sbjct: 367 KLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLCGCSHAG 426

Query: 430 LVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPL 488
           LVD+GLKYF+SM  DYN+NP++EIY CVVDLLGRAGRV+EA++L+++MPF+PDESVWG L
Sbjct: 427 LVDKGLKYFRSMLEDYNINPDQEIYRCVVDLLGRAGRVEEAFQLVENMPFEPDESVWGAL 486

Query: 489 LGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSK 548
           LGACK ++L NLG LAA RVLD +PNM GTY++LS IYAAEGKW EFAK RK+M+GM  K
Sbjct: 487 LGACKAYKLSNLGNLAAQRVLDRRPNMAGTYLLLSKIYAAEGKWGEFAKMRKLMKGMNKK 546

Query: 549 KEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEG 607
           KEVG SWIE+R++V  F+   KMG H ++V+ V+++LI HM +     D+D ++  LEG
Sbjct: 547 KEVGKSWIEIRNEVYSFVVGAKMGPHIEWVHKVIDVLIWHMKDDGDVTDLDYIVDYLEG 605


>gi|449508637|ref|XP_004163369.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 594

 Score =  806 bits (2083), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/583 (65%), Positives = 472/583 (80%), Gaps = 1/583 (0%)

Query: 10  AATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLF 69
           A++ H H IP I++ SLQ +  S++QS+PP  P+GPS+ ATNLIKSYFD+GL  EA  LF
Sbjct: 7   ASSPHFHPIPLIVRNSLQWISNSTLQSNPPFTPEGPSVWATNLIKSYFDKGLTREACNLF 66

Query: 70  DEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLS 129
           +E+PERDVV+WT MI G+TS N ++QAWT+F EM+R+EV PNAFT+SSVLKACKGMK+LS
Sbjct: 67  NEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQPNAFTMSSVLKACKGMKALS 126

Query: 130 NAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGY 189
             AL H +A K G++ S+YV+N+L+D+YA  C +MD+A  VFND+  K  VSWTTLI G+
Sbjct: 127 CGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDIPLKTAVSWTTLIAGF 186

Query: 190 AHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNL 249
            H G+GY GL  F++MLLE V  N +SFSIA RACAS    S GK IHAAV K+G   + 
Sbjct: 187 THRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDA 246

Query: 250 PVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSER 309
           PVMNSILDMYCR + L DA + F E+TEK+LITWNT+IAGYE+S SSE L++F +M SE 
Sbjct: 247 PVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGYERSDSSESLSLFFQMGSEG 306

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
           + PNCFTFTSI AACA LA LSCGQQVH GIVRRG D N+AL N+LIDMYAKCG+ISDS 
Sbjct: 307 YKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCGSISDSH 366

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
           K+F +M  RDLV+WT+MMIGYGAHG+GKEA++LFDEMV+SG++PDRIVFM VL  CSHAG
Sbjct: 367 KLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLCGCSHAG 426

Query: 430 LVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPL 488
           LVD+GLKYF+SM  DYN+NP++EIY CVVDLLGRAGRV+EA++L+++MPF+PDESVWG L
Sbjct: 427 LVDKGLKYFRSMLEDYNINPDQEIYRCVVDLLGRAGRVEEAFQLVENMPFEPDESVWGAL 486

Query: 489 LGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSK 548
           LGACK ++L NLG LAA RVLD +PNM GTY++LS IYAAEGKW EFAK RK+M+GM  K
Sbjct: 487 LGACKAYKLSNLGNLAAQRVLDRRPNMAGTYLLLSKIYAAEGKWGEFAKMRKLMKGMNKK 546

Query: 549 KEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNE 591
           KEVG SWIE+R++V  F+   KMG H ++V+ V+++LI HM +
Sbjct: 547 KEVGKSWIEIRNEVYSFVVGAKMGPHIEWVHKVIDVLIWHMKD 589


>gi|224122888|ref|XP_002318941.1| predicted protein [Populus trichocarpa]
 gi|222857317|gb|EEE94864.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  798 bits (2060), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/613 (65%), Positives = 487/613 (79%), Gaps = 7/613 (1%)

Query: 1   MRTKRLLSYAATFHCHKIPPIIKQSLQSVKKSSIQ-SDPPLIPKGPSILATNLIKSYFDE 59
           M TKRLLS A  FH    PP++K  LQ  + +  Q S  P   KG SILAT+L+KSYF+ 
Sbjct: 1   MSTKRLLS-ANNFH--PFPPMMKNYLQWAQNTPTQKSGTPFNAKGTSILATDLLKSYFER 57

Query: 60  GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP-NAFTLSSV 118
           GL  +AR LFDEMPERDVV+WT MI+GYT  N + QAW+VFV+MV+N  +P NAFT+SSV
Sbjct: 58  GLTSQARNLFDEMPERDVVAWTTMISGYTHCNEYTQAWSVFVDMVKNGNDPPNAFTISSV 117

Query: 119 LKACKGMKSLSNAALVHGMAIKEG-LEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK 177
           LKACKGMK +    LVHG+AIK   +EG IYV+N+LMD+YA+C + M +A +VF+D+K K
Sbjct: 118 LKACKGMKRVFCGRLVHGLAIKRRFMEGFIYVDNALMDMYASCGVGMRDACVVFHDIKEK 177

Query: 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIH 237
           N VSWTTLI GY H GNG   L +F+EMLL+GV +NP+S SIAVRACAS G  +FG+ IH
Sbjct: 178 NVVSWTTLIAGYTHRGNGNRALQIFREMLLDGVALNPHSISIAVRACASIGSQNFGRQIH 237

Query: 238 AAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE 297
            AVIKHGF S+LPV NSILDMYCR  CLS+AN+YF++MTEKDLITWNT+IAGYE+S S E
Sbjct: 238 TAVIKHGFESDLPVTNSILDMYCRCGCLSEANKYFNDMTEKDLITWNTLIAGYERSDSIE 297

Query: 298 CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALID 357
              +FS+M+SE FSPNCFTFTS++AACA  AAL CGQQVH GI RRGLDGNL LANALID
Sbjct: 298 PFFIFSQMESEGFSPNCFTFTSLVAACANAAALQCGQQVHGGIFRRGLDGNLELANALID 357

Query: 358 MYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIV 417
           MYAKCGNI DSQK FSEMS  +LV+WTSMMIGYG HG+GKEA+ELFDEMV+SG+RPD++V
Sbjct: 358 MYAKCGNIIDSQKNFSEMSCTNLVSWTSMMIGYGTHGYGKEAVELFDEMVRSGIRPDQVV 417

Query: 418 FMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
           FMAVL ACSHAGLVD+GL+Y   M NDY++ PN+EIYGCVVDLLGR GRV++AY+LI+SM
Sbjct: 418 FMAVLHACSHAGLVDQGLRYINCMINDYHIKPNQEIYGCVVDLLGRPGRVEDAYQLIRSM 477

Query: 477 PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFA 536
           PF  DESVWG LLGACK H    LGKLAA + L L+PNM+ TY++LSNIYAAEGKW E A
Sbjct: 478 PFMADESVWGALLGACKAHNFSRLGKLAAKKALALRPNMVETYVMLSNIYAAEGKWGEAA 537

Query: 537 KFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEP 596
           + RK+M+  G +K  G SWIEVR++V  F+  +KMGSH ++VY VLE+ ++HM E  Y P
Sbjct: 538 RMRKLMKRAGCRKVAGRSWIEVRNQVYSFVVGNKMGSHKEWVYEVLELPVQHMKEAGYVP 597

Query: 597 DIDCLIHDLEGET 609
           ++DCLIHD E  T
Sbjct: 598 EVDCLIHDQEDGT 610


>gi|357441891|ref|XP_003591223.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480271|gb|AES61474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 606

 Score =  798 bits (2060), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/609 (63%), Positives = 474/609 (77%), Gaps = 10/609 (1%)

Query: 3   TKRLLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLI 62
           +++LLS   + +   IP  ++ SL+      IQ+D P  PK  + L T+LIKSYFD+G  
Sbjct: 6   SRKLLS---STNFRPIPFSVQNSLRC-----IQNDTPFNPKDLTGLTTDLIKSYFDKGSF 57

Query: 63  EEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKAC 122
           EEA TLFDEMP RDV++WT MI GYTS N H++AW VF  M+R+ V PNAFT+S+VLKAC
Sbjct: 58  EEAHTLFDEMPHRDVIAWTSMITGYTSCNHHSRAWNVFTNMLRDGVKPNAFTVSAVLKAC 117

Query: 123 KGMKSLSNAALVHGMAIKEGLEGS-IYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS 181
           K +K+L    LVHG+AIK G +GS IYV+N+LMD+YATCC SMDNARLVF D+  KN VS
Sbjct: 118 KSLKALLCGKLVHGLAIKIGTQGSSIYVDNALMDMYATCCDSMDNARLVFEDIGTKNAVS 177

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           WTTLITGY H  + +GGL VF++M +E  E++P+SFSIAV ACAS G  + GK +HAAVI
Sbjct: 178 WTTLITGYTHRRDAFGGLRVFRQMFMEEGELSPFSFSIAVSACASIGSSNLGKQVHAAVI 237

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNM 301
            HGF SNLPVMN+ILDMYCR  C S+A Q F EMT+KD ITWNT+IAG+E   S E L +
Sbjct: 238 NHGFESNLPVMNAILDMYCRCRCASEAKQLFGEMTQKDTITWNTLIAGFETLDSYESLCI 297

Query: 302 FSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK 361
           FS+M SE FSPNCFTFTS+IAACA LA L CGQQ+H GI+ RGLD NL L+NALIDMYAK
Sbjct: 298 FSQMVSEGFSPNCFTFTSVIAACANLAILYCGQQLHGGIIHRGLDNNLELSNALIDMYAK 357

Query: 362 CGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAV 421
           CGN++DS KIFS M   +LV+WTSMMIGYGAHGHGKEA++LF+EMV SG++PD+IVFMAV
Sbjct: 358 CGNVADSHKIFSGMRHTNLVSWTSMMIGYGAHGHGKEAVDLFNEMVGSGIKPDKIVFMAV 417

Query: 422 LTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKP 480
           L+ACSHAGLVDEGL+YF+ M   YNV P+++IY CVVDLL RAGRVKEAYELI++MPFKP
Sbjct: 418 LSACSHAGLVDEGLRYFRLMTSYYNVAPDRDIYACVVDLLSRAGRVKEAYELIENMPFKP 477

Query: 481 DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRK 540
           DES+W  LLGACK+++ P++ KLAAL+VL++KPN  GTY++LSN  AAEG W +FA  RK
Sbjct: 478 DESIWVALLGACKKYKQPSIQKLAALKVLEMKPNKAGTYVLLSNFSAAEGNWADFASLRK 537

Query: 541 IMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDC 600
           +MR   SKKEVG SWIE++++VC FI  D   S  + V  VLE+LIRHM +  Y  D+DC
Sbjct: 538 LMRSTKSKKEVGRSWIELKNQVCSFIVGDIFDSSNKEVCEVLELLIRHMKDAGYVLDLDC 597

Query: 601 LIHDLEGET 609
             HDLE ET
Sbjct: 598 SAHDLEDET 606


>gi|15223562|ref|NP_176050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173051|sp|Q9FXA9.1|PPR83_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g56570
 gi|9954755|gb|AAG09106.1|AC009323_17 Hypothetical protein [Arabidopsis thaliana]
 gi|332195289|gb|AEE33410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 611

 Score =  754 bits (1948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/594 (60%), Positives = 462/594 (77%), Gaps = 5/594 (0%)

Query: 18  IPPIIKQSLQSVKKSSIQSD--PPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPER 75
           IP  ++ SL++    S Q+   PP  PK   ILATNLI SYF++GL+EEAR+LFDEMP+R
Sbjct: 15  IPNFVRSSLRNAGVESSQNTEYPPYKPKKHHILATNLIVSYFEKGLVEEARSLFDEMPDR 74

Query: 76  DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVH 135
           DVV+WT MI GY S N + +AW  F EMV+   +PN FTLSSVLK+C+ MK L+  ALVH
Sbjct: 75  DVVAWTAMITGYASSNYNARAWECFHEMVKQGTSPNEFTLSSVLKSCRNMKVLAYGALVH 134

Query: 136 GMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNG 195
           G+ +K G+EGS+YV+N++M++YATC ++M+ A L+F D+K KNDV+WTTLITG+ H G+G
Sbjct: 135 GVVVKLGMEGSLYVDNAMMNMYATCSVTMEAACLIFRDIKVKNDVTWTTLITGFTHLGDG 194

Query: 196 YGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSI 255
            GGL ++K+MLLE  E+ PY  +IAVRA AS   V+ GK IHA+VIK GF SNLPVMNSI
Sbjct: 195 IGGLKMYKQMLLENAEVTPYCITIAVRASASIDSVTTGKQIHASVIKRGFQSNLPVMNSI 254

Query: 256 LDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCF 315
           LD+YCR   LS+A  YF EM +KDLITWNT+I+  E+S SSE L MF + +S+ F PNC+
Sbjct: 255 LDLYCRCGYLSEAKHYFHEMEDKDLITWNTLISELERSDSSEALLMFQRFESQGFVPNCY 314

Query: 316 TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEM 375
           TFTS++AACA +AAL+CGQQ+H  I RRG + N+ LANALIDMYAKCGNI DSQ++F E+
Sbjct: 315 TFTSLVAACANIAALNCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEI 374

Query: 376 SD-RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434
            D R+LV+WTSMMIGYG+HG+G EA+ELFD+MV SG+RPDRIVFMAVL+AC HAGLV++G
Sbjct: 375 VDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKG 434

Query: 435 LKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACK 493
           LKYF  M ++Y +NP+++IY CVVDLLGRAG++ EAYEL++ MPFKPDES WG +LGACK
Sbjct: 435 LKYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMPFKPDESTWGAILGACK 494

Query: 494 EHRLPNL-GKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVG 552
            H+   L  +LAA +V++LKP M+GTY++LS IYAAEGKW +FA+ RK+MR MG+KKE G
Sbjct: 495 AHKHNGLISRLAARKVMELKPKMVGTYVMLSYIYAAEGKWVDFARVRKMMRMMGNKKEAG 554

Query: 553 MSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
           MSWI V ++V  F  +DKM  +   VY VL +LI    E  Y P++D L++D E
Sbjct: 555 MSWILVENQVFSFAVSDKMCPNASSVYSVLGLLIEETREAGYVPELDSLVNDQE 608


>gi|297848206|ref|XP_002891984.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297337826|gb|EFH68243.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 611

 Score =  753 bits (1944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/594 (60%), Positives = 462/594 (77%), Gaps = 5/594 (0%)

Query: 18  IPPIIKQSLQS--VKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPER 75
           IP  ++ SL++  V+ S     PP  PK   ILATNLI SYF++GL+EEAR+LFDEMPER
Sbjct: 15  IPNFVRSSLRNACVESSQNTESPPYKPKKHHILATNLIVSYFEKGLVEEARSLFDEMPER 74

Query: 76  DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVH 135
           DVV+WT MI GY S N ++ AW  F EM +   +PN FTLSSVLK+C+ MK L+  ALVH
Sbjct: 75  DVVAWTAMITGYASSNYNSCAWECFHEMFKQGRSPNEFTLSSVLKSCRNMKVLAYGALVH 134

Query: 136 GMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNG 195
           G+ +K G+EGS+YV+N+LM++YATC ++M+ A L+F D+K KNDV+WTTLITG+ H G+G
Sbjct: 135 GVVVKLGMEGSLYVDNALMNMYATCSVTMEAAFLIFRDIKVKNDVTWTTLITGFTHLGDG 194

Query: 196 YGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSI 255
            GGL ++K+MLLE  ++ PY  +IAVRA AS   V+ GK IHA+V+K GF SNLPVMNSI
Sbjct: 195 IGGLKMYKQMLLENADVTPYCITIAVRASASIDSVTTGKQIHASVVKRGFQSNLPVMNSI 254

Query: 256 LDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCF 315
           LD YCR   LS+A +YF EM +KDLITWNT+I+  E+S SSE L MF + +S+ F PNC+
Sbjct: 255 LDFYCRCGYLSEAKRYFHEMEDKDLITWNTLISELERSDSSEALLMFQRFESQGFVPNCY 314

Query: 316 TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEM 375
           TFTS++AACA +AAL+CGQQ+H  I RRG + N+ LANALIDMYAKCG+I DS+++F E+
Sbjct: 315 TFTSLVAACANIAALNCGQQLHGRIYRRGFNKNVELANALIDMYAKCGDIPDSERVFGEI 374

Query: 376 SD-RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434
            + R+LV+WTSMMIGYG+HG+G EA+ELFD+MV SG+RPDRIVFMAVL+AC HAGLV++G
Sbjct: 375 EERRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKG 434

Query: 435 LKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACK 493
           LKYF  M ++Y +NP+++IY CVVDLLGRAG++ EAYEL++ MPFKPDES WG +LGACK
Sbjct: 435 LKYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMPFKPDESTWGAILGACK 494

Query: 494 EHRLPNL-GKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVG 552
            H+   L  +LAA +V++LKP M+GTY++LS IYAAEGKW EFA+ RK+MR MG+KKE G
Sbjct: 495 AHKHTGLISRLAAKKVMELKPRMVGTYVMLSYIYAAEGKWVEFARVRKMMRMMGNKKEAG 554

Query: 553 MSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
           MSWIEV ++V  F  +DKM  +   VY VL +LI    E  Y PD+D L++D E
Sbjct: 555 MSWIEVENQVFSFAVSDKMCPNASSVYSVLGLLIEETKEAGYVPDLDSLVYDQE 608


>gi|224124454|ref|XP_002330027.1| predicted protein [Populus trichocarpa]
 gi|222871452|gb|EEF08583.1| predicted protein [Populus trichocarpa]
          Length = 502

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/490 (70%), Positives = 405/490 (82%), Gaps = 3/490 (0%)

Query: 72  MPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE-VNPNAFTLSSVLKACKGMKSLSN 130
           MPERDVV+ T MI+GYT  N + QAW+VFV+MV+N+ V PNAFT+SSVLKACKGM S+  
Sbjct: 1   MPERDVVALTAMISGYTHCNEYTQAWSVFVDMVKNDNVPPNAFTISSVLKACKGMNSVFC 60

Query: 131 AALVHGMAIKEG-LEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGY 189
             LVHG+AIK   +EG IYV+N+LMD+YATC ++M +A +VF+D+K KN VSWTTLI GY
Sbjct: 61  GGLVHGLAIKRRFVEGFIYVDNALMDMYATCGVTMRDACVVFHDIKEKNVVSWTTLIAGY 120

Query: 190 AHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNL 249
            H GNG   + VF+E+ LEG E+NP+S SIAVRACAS G    G+ IH AVIKHGF S+L
Sbjct: 121 THRGNGSRAVQVFREISLEGAELNPHSISIAVRACASVGSNILGRQIHTAVIKHGFESDL 180

Query: 250 PVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSER 309
           PVMNSILDMYCR  CLS+A +YF+EM+EKDLITWNT+IAGYE+S S E L +FS+M+SE 
Sbjct: 181 PVMNSILDMYCRCGCLSEAKEYFNEMSEKDLITWNTLIAGYERSDSIEPLFIFSQMESEG 240

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
           FSPNCFTFTS++AACA  AAL CGQQVH GI RRGLDGNL LANALIDMYAKCGNI DSQ
Sbjct: 241 FSPNCFTFTSLVAACANAAALQCGQQVHGGIFRRGLDGNLELANALIDMYAKCGNIIDSQ 300

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
           K FSEMS  +LV+WTSMMIGYG HG+GKEA+ELFDEMV+SG+RPD++VFMAVL ACSHAG
Sbjct: 301 KNFSEMSCTNLVSWTSMMIGYGTHGYGKEAVELFDEMVRSGIRPDQVVFMAVLHACSHAG 360

Query: 430 LVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPL 488
           LVD+GL+YF  M +DY++ PN+EIYGCVV LLGRAGRV+EAY LI+SMPF  DESVWG L
Sbjct: 361 LVDQGLRYFNCMLDDYHIKPNQEIYGCVVGLLGRAGRVEEAYHLIRSMPFMADESVWGAL 420

Query: 489 LGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSK 548
           LGACK H L  LGKLAA + L LKPNM+ TY++LSNIYAAEGKW E  + RK+M+  GSK
Sbjct: 421 LGACKAHNLSKLGKLAAKKALALKPNMVETYVMLSNIYAAEGKWGEAERMRKLMKRAGSK 480

Query: 549 KEVGMSWIEV 558
           KE G SWIE+
Sbjct: 481 KEAGRSWIEM 490



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 165/313 (52%), Gaps = 24/313 (7%)

Query: 62  IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121
           + +A  +F ++ E++VVSWT +IAGYT     ++A  VF E+       N  ++S  ++A
Sbjct: 95  MRDACVVFHDIKEKNVVSWTTLIAGYTHRGNGSRAVQVFREISLEGAELNPHSISIAVRA 154

Query: 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNARLVFNDMKWKNDV 180
           C  + S      +H   IK G E  + V NS++D+Y  C C+S   A+  FN+M  K+ +
Sbjct: 155 CASVGSNILGRQIHTAVIKHGFESDLPVMNSILDMYCRCGCLS--EAKEYFNEMSEKDLI 212

Query: 181 SWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAV 240
           +W TLI GY  S +    L +F +M  EG   N ++F+  V ACA+   +  G+ +H  +
Sbjct: 213 TWNTLIAGYERS-DSIEPLFIFSQMESEGFSPNCFTFTSLVAACANAAALQCGQQVHGGI 271

Query: 241 IKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECL 299
            + G   NL + N+++DMY +   + D+ + F EM+  +L++W +++ GY   G   E +
Sbjct: 272 FRRGLDGNLELANALIDMYAKCGNIIDSQKNFSEMSCTNLVSWTSMMIGYGTHGYGKEAV 331

Query: 300 NMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMY 359
            +F +M      P+   F +++ AC+           HAG+V +GL       N ++D Y
Sbjct: 332 ELFDEMVRSGIRPDQVVFMAVLHACS-----------HAGLVDQGLR----YFNCMLDDY 376

Query: 360 AKCGNISDSQKIF 372
               +I  +Q+I+
Sbjct: 377 ----HIKPNQEIY 385



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 112/211 (53%), Gaps = 10/211 (4%)

Query: 23  KQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTV 82
           +Q   +V K   +SD P++         +++  Y   G + EA+  F+EM E+D+++W  
Sbjct: 165 RQIHTAVIKHGFESDLPVM--------NSILDMYCRCGCLSEAKEYFNEMSEKDLITWNT 216

Query: 83  MIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG 142
           +IAGY   +   +   +F +M     +PN FT +S++ AC    +L     VHG   + G
Sbjct: 217 LIAGYERSD-SIEPLFIFSQMESEGFSPNCFTFTSLVAACANAAALQCGQQVHGGIFRRG 275

Query: 143 LEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVF 202
           L+G++ + N+L+D+YA C   +D+ +  F++M   N VSWT+++ GY   G G   + +F
Sbjct: 276 LDGNLELANALIDMYAKCGNIIDSQK-NFSEMSCTNLVSWTSMMIGYGTHGYGKEAVELF 334

Query: 203 KEMLLEGVEMNPYSFSIAVRACASTGWVSFG 233
            EM+  G+  +   F   + AC+  G V  G
Sbjct: 335 DEMVRSGIRPDQVVFMAVLHACSHAGLVDQG 365


>gi|356574078|ref|XP_003555179.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g56570-like [Glycine max]
          Length = 598

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/559 (56%), Positives = 408/559 (72%), Gaps = 19/559 (3%)

Query: 35  QSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHN 94
           Q    L P   S   ++ +KS F++  I+E   LFD+MP+R+VV+WT MI    S N H 
Sbjct: 51  QKLSSLHPIEESFCPSHFLKSSFNKVSIKEPHALFDKMPQRNVVTWTAMITSNNSRNNHM 110

Query: 95  QAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGS-IYVENSL 153
           +AW+VF +M+R+                 G+K+LS   LVH +AIK G++GS +YV+NSL
Sbjct: 111 RAWSVFPQMLRD-----------------GVKALSCGQLVHSLAIKIGVQGSSVYVDNSL 153

Query: 154 MDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMN 213
           MD+YATCC SMD AR+VF+D+  K DV WTTLITGY H G+ YGGL VF++M LE   ++
Sbjct: 154 MDMYATCCDSMDRARMVFDDITTKTDVCWTTLITGYTHRGDAYGGLRVFRQMFLEEGALS 213

Query: 214 PYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFD 273
            +SFSIA RACAS G    GK +HA V+KHGF SNLPVMNSILDMYC+  C S+A + F 
Sbjct: 214 LFSFSIAARACASIGSGILGKQVHAEVVKHGFESNLPVMNSILDMYCKCHCESEAKRLFS 273

Query: 274 EMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG 333
            MT KD ITWNT+IAG+E   S E L +FS+M SE   P+CF+FTS + ACA LA L CG
Sbjct: 274 VMTHKDTITWNTLIAGFEALDSRESLCIFSRMVSEGLXPDCFSFTSAVGACANLAVLYCG 333

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
           QQ+H  IVR GLD  L ++NALI MYAKCGNI+DS+KIFS+M   +LV+WTSM+ GYG H
Sbjct: 334 QQLHGVIVRSGLDNYLEISNALIYMYAKCGNIADSRKIFSKMPCTNLVSWTSMINGYGDH 393

Query: 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEI 452
           G+GK+A+ELF+EM++SG++PD++VFMAVL+ACSHAGLVDEGL+YF+ M   YN+ P+ EI
Sbjct: 394 GYGKDAVELFNEMIRSGIKPDKMVFMAVLSACSHAGLVDEGLRYFRLMTSYYNITPDIEI 453

Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLK 512
           YGCVVDL GRAGRVKEAY+LI++MPF PDES+W  LLGACK H  P++ K AALR LD+K
Sbjct: 454 YGCVVDLFGRAGRVKEAYQLIENMPFNPDESIWAALLGACKVHNQPSVAKFAALRALDMK 513

Query: 513 PNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMG 572
           P   GTY ++SNIYAAEG W++FA   K+ RG+ +K + G SWIE++D++C F+  D+  
Sbjct: 514 PISAGTYALISNIYAAEGNWDDFASSTKLRRGIKNKSDSGRSWIELKDQICSFVVGDRFV 573

Query: 573 SHTQYVYGVLEMLIRHMNE 591
           S  + V  VL++L+ HM +
Sbjct: 574 SSNEQVCEVLKLLMVHMKD 592


>gi|356533529|ref|XP_003535316.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g56570-like [Glycine max]
          Length = 691

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 307/522 (58%), Positives = 386/522 (73%), Gaps = 8/522 (1%)

Query: 57  FDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLS 116
           FD+G IEE   +FD M  R+VV+WT M +G    N H  AW+VF +M+R+ VNP AFT+S
Sbjct: 18  FDKGSIEEPHAVFDXMSHRNVVTWTAMXSG----NNHMSAWSVFPQMLRDGVNPTAFTIS 73

Query: 117 SVLKACKGMKSLSNAALVHGMAIKEGLEGS-IYVENSLMDVYATCCISMDNARLVFNDMK 175
           S LKACKG+K+L    LVH +A K G++GS IY++N+LMD+YATCC  MD+AR+VF+D+ 
Sbjct: 74  SFLKACKGLKALPCGQLVHALAFKIGVQGSSIYIDNALMDMYATCCNRMDHARMVFDDIT 133

Query: 176 WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKL 235
            K DV+ TT ITGY H G   GGL VF +M L+   ++ +SFSIA +ACAS G    GK 
Sbjct: 134 TKTDVTRTTFITGYTHRGGAXGGLQVFSQMFLDEGALSLFSFSIAAKACASIGSGILGKQ 193

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS 295
           ++AAV+KHGF SNLPVMNSILDMYC+  C S+  Q F EMT KD ITWNT+IAG+E   S
Sbjct: 194 VNAAVVKHGFESNLPVMNSILDMYCKCHCASEEKQLFSEMTHKDTITWNTLIAGFEALDS 253

Query: 296 SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
            E L +FS M SE FSP+CF+FTS + ACA LA L CGQQ+H  IV RGLD NL ++NAL
Sbjct: 254 RESLCIFSXMVSEGFSPDCFSFTSAVGACANLAVLYCGQQLHGVIVHRGLD-NLEISNAL 312

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           I MYAKCGNI+DS  IFS+M     V+WTSMMI YG HG+GKEA+ELF+E+V+SG++PD+
Sbjct: 313 IYMYAKCGNIADSHNIFSKMLXHKFVSWTSMMIEYGDHGYGKEAVELFNEIVRSGIKPDK 372

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
           +VFMAVL+ACSH GLVDEG++YF  M   Y+V P+ E+Y CVVDLLGRAGRVKEAY+LI+
Sbjct: 373 MVFMAVLSACSHTGLVDEGMRYFILMTSYYDVTPDIEVYECVVDLLGRAGRVKEAYQLIE 432

Query: 475 SMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEE 534
           SMPF P+ES+W  LLGACK H+ P      ALR LD+KPN  GTY +LSNIYAAEG W +
Sbjct: 433 SMPFNPNESIWAALLGACKVHKQPCGQISRALRALDMKPNSAGTYALLSNIYAAEGNWAD 492

Query: 535 FAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQ 576
           FA   K +R + +K E G  WIE++D+VC F+  D+  S  +
Sbjct: 493 FASSTK-LRSIKNKSESGXEWIELKDQVCSFVVGDRFVSSNE 533


>gi|255542944|ref|XP_002512535.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548496|gb|EEF49987.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 387

 Score =  556 bits (1432), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 268/384 (69%), Positives = 319/384 (83%)

Query: 53  IKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNA 112
           +KSYF++GL+ EAR +FDEM ERDVV+WTVMIAGY S N H  AW++F +MV +E+NPNA
Sbjct: 1   MKSYFEKGLVREARNVFDEMLERDVVAWTVMIAGYASCNEHAYAWSMFCDMVASEMNPNA 60

Query: 113 FTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFN 172
           FT+SSVLKACKGMKSLS   LVHG AIK G+EGSI+V+N+LMD YATCC+SM  A LVF 
Sbjct: 61  FTISSVLKACKGMKSLSCGTLVHGFAIKHGIEGSIFVDNALMDAYATCCVSMREACLVFC 120

Query: 173 DMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSF 232
            ++ KN VSWTTLI GY H G+G+ GL +F++MLLE  E NPYSFSIAVRACAS G  +F
Sbjct: 121 GIEVKNAVSWTTLIAGYTHKGDGHLGLQIFRQMLLEEEECNPYSFSIAVRACASIGSHNF 180

Query: 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEK 292
           GK IHAAVIKHG   +LPVMNSILDMYCR   L +ANQYF EMT +DLITWNTIIAGYE+
Sbjct: 181 GKQIHAAVIKHGCEFSLPVMNSILDMYCRCGRLPEANQYFHEMTRRDLITWNTIIAGYER 240

Query: 293 SGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
           S S E L +FS+MK   F P+C TFTS+ AACA LA LSCGQQVH GI+++GLD +L LA
Sbjct: 241 SDSIEALFIFSEMKLNGFDPDCNTFTSVTAACANLAVLSCGQQVHGGIIQKGLDKDLILA 300

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
           NALIDMYAKCG I+DS+KIFSE+S ++LV+WTSMMIGYGAHG G+E +ELFDEMV+SG++
Sbjct: 301 NALIDMYAKCGIITDSRKIFSELSCKNLVSWTSMMIGYGAHGFGREVVELFDEMVESGIK 360

Query: 413 PDRIVFMAVLTACSHAGLVDEGLK 436
           PD I FMAVL+ACSHAGLVD+GL+
Sbjct: 361 PDHIAFMAVLSACSHAGLVDQGLR 384



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 176/318 (55%), Gaps = 9/318 (2%)

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA--VRAC 224
           AR VF++M  ++ V+WT +I GYA          +F +M+    EMNP +F+I+  ++AC
Sbjct: 13  ARNVFDEMLERDVVAWTVMIAGYASCNEHAYAWSMFCDMVAS--EMNPNAFTISSVLKAC 70

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLS--DANQYFDEMTEKDLIT 282
                +S G L+H   IKHG   ++ V N+++D Y    C+S  +A   F  +  K+ ++
Sbjct: 71  KGMKSLSCGTLVHGFAIKHGIEGSIFVDNALMDAYATC-CVSMREACLVFCGIEVKNAVS 129

Query: 283 WNTIIAGYEKSGSSEC-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           W T+IAGY   G     L +F +M  E    N ++F+  + ACA++ + + G+Q+HA ++
Sbjct: 130 WTTLIAGYTHKGDGHLGLQIFRQMLLEEEECNPYSFSIAVRACASIGSHNFGKQIHAAVI 189

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           + G + +L + N+++DMY +CG + ++ + F EM+ RDL+TW +++ GY       EA+ 
Sbjct: 190 KHGCEFSLPVMNSILDMYCRCGRLPEANQYFHEMTRRDLITWNTIIAGY-ERSDSIEALF 248

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461
           +F EM  +G  PD   F +V  AC++  ++  G +    +    ++ +  +   ++D+  
Sbjct: 249 IFSEMKLNGFDPDCNTFTSVTAACANLAVLSCGQQVHGGIIQKGLDKDLILANALIDMYA 308

Query: 462 RAGRVKEAYELIKSMPFK 479
           + G + ++ ++   +  K
Sbjct: 309 KCGIITDSRKIFSELSCK 326



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 119/228 (52%), Gaps = 3/228 (1%)

Query: 265 LSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAA 323
           + +A   FDEM E+D++ W  +IAGY      +   +MF  M +   +PN FT +S++ A
Sbjct: 10  VREARNVFDEMLERDVVAWTVMIAGYASCNEHAYAWSMFCDMVASEMNPNAFTISSVLKA 69

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG-NISDSQKIFSEMSDRDLVT 382
           C  + +LSCG  VH   ++ G++G++ + NAL+D YA C  ++ ++  +F  +  ++ V+
Sbjct: 70  CKGMKSLSCGTLVHGFAIKHGIEGSIFVDNALMDAYATCCVSMREACLVFCGIEVKNAVS 129

Query: 383 WTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN 442
           WT+++ GY   G G   +++F +M+      +   F   + AC+  G  + G +   ++ 
Sbjct: 130 WTTLIAGYTHKGDGHLGLQIFRQMLLEEEECNPYSFSIAVRACASIGSHNFGKQIHAAVI 189

Query: 443 DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490
            +    +  +   ++D+  R GR+ EA +    M  + D   W  ++ 
Sbjct: 190 KHGCEFSLPVMNSILDMYCRCGRLPEANQYFHEMT-RRDLITWNTIIA 236



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 105/188 (55%), Gaps = 2/188 (1%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
           +++  Y   G + EA   F EM  RD+++W  +IAGY   +   +A  +F EM  N  +P
Sbjct: 202 SILDMYCRCGRLPEANQYFHEMTRRDLITWNTIIAGYERSD-SIEALFIFSEMKLNGFDP 260

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           +  T +SV  AC  +  LS    VHG  I++GL+  + + N+L+D+YA C I  D +R +
Sbjct: 261 DCNTFTSVTAACANLAVLSCGQQVHGGIIQKGLDKDLILANALIDMYAKCGIITD-SRKI 319

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F+++  KN VSWT+++ GY   G G   + +F EM+  G++ +  +F   + AC+  G V
Sbjct: 320 FSELSCKNLVSWTSMMIGYGAHGFGREVVELFDEMVESGIKPDHIAFMAVLSACSHAGLV 379

Query: 231 SFGKLIHA 238
             G  + A
Sbjct: 380 DQGLRLRA 387



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 35  QSDPPLIPKGPS---ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFN 91
           Q    +I KG     ILA  LI  Y   G+I ++R +F E+  +++VSWT M+ GY +  
Sbjct: 283 QVHGGIIQKGLDKDLILANALIDMYAKCGIITDSRKIFSELSCKNLVSWTSMMIGYGAHG 342

Query: 92  CHNQAWTVFVEMVRNEVNPNAFTLSSVLKAC 122
              +   +F EMV + + P+     +VL AC
Sbjct: 343 FGREVVELFDEMVESGIKPDHIAFMAVLSAC 373


>gi|357128066|ref|XP_003565697.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Brachypodium distachyon]
          Length = 564

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 248/549 (45%), Positives = 371/549 (67%), Gaps = 9/549 (1%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108
           AT LIKS    G +  AR +FDEMP+RDVV+WT M++GY S  CH+ A  +F  M+   V
Sbjct: 6   ATTLIKSLCAGGALRHARAVFDEMPDRDVVAWTAMLSGYASNGCHSYALDLFRRMLAAGV 65

Query: 109 NPNAFTLSSVLKACKGMKSLSNA--ALVHGMAIKEGLEGSIYVENSLMDVYATC--CISM 164
            PN FTLSSVL AC+G  +      + +H +A++ G++   YV N+L++ YA+C   + +
Sbjct: 66  GPNEFTLSSVLTACRGGAADGGCEPSSLHAVAVRRGVDHMPYVVNALIEAYASCEEGVGV 125

Query: 165 DNARLVFNDM-KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           + +R +F+ +   +   SWT+++ GY+  G    GL +F+ M+ +G+E++P++ SIA+ A
Sbjct: 126 EESRKLFDALGSGRTAASWTSMVAGYSRWGQEQTGLQLFQTMIQDGIELSPFTCSIALHA 185

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           CAS   +  G+ +H   ++  F +NL V NS++DMYC    L DA + FDE+ E++L+TW
Sbjct: 186 CASIANLCVGQQLHVLCLRKAFNANLTVANSLIDMYCSCANLLDARRLFDEIPERNLVTW 245

Query: 284 NTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           NT+IA Y +      L +  +M      PNCFT TSI +ACA LA+L  GQQVH   +RR
Sbjct: 246 NTMIAWYSQCNHLMALQLLREMN---LQPNCFTLTSITSACAGLASLRFGQQVHGAALRR 302

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
               +L + NAL+DMY+KCG+I++++K+F+ M  +D ++WTSM+ GYG +G+  E+I+LF
Sbjct: 303 NYGKDLQMCNALVDMYSKCGSIANAKKMFNMMDYKDKLSWTSMITGYGMNGYANESIQLF 362

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGR 462
             M+ +GV PD +VF+ ++ AC+H GLVDEG  +F+SM ++YN+ PNKEIYGCV +LL R
Sbjct: 363 TSMIHAGVHPDHVVFLGLICACNHGGLVDEGWNFFRSMTSEYNLQPNKEIYGCVTNLLAR 422

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AGR++EA++LI  MPF PDE+VWG LLGACK H+   LG+LAA +++++ P+   TY++L
Sbjct: 423 AGRLREAFDLIHRMPFAPDETVWGALLGACKMHKNVELGRLAARKIIEINPDRAKTYVLL 482

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           +NIYAA  KW E+A  R+++RG+GS+KE G SWI+V DK+  F   D           VL
Sbjct: 483 ANIYAAGNKWGEYADTRRLLRGIGSRKEAGTSWIDVTDKIYSFTTADSSSPQVSLADEVL 542

Query: 583 EMLIRHMNE 591
           ++L RHM+E
Sbjct: 543 QILARHMHE 551



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 122/242 (50%), Gaps = 7/242 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A +LI  Y     + +AR LFDE+PER++V+W  MIA Y+  N H  A  +  EM    
Sbjct: 213 VANSLIDMYCSCANLLDARRLFDEIPERNLVTWNTMIAWYSQCN-HLMALQLLREM---N 268

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + PN FTL+S+  AC G+ SL     VHG A++      + + N+L+D+Y+ C  S+ NA
Sbjct: 269 LQPNCFTLTSITSACAGLASLRFGQQVHGAALRRNYGKDLQMCNALVDMYSKCG-SIANA 327

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           + +FN M +K+ +SWT++ITGY  +G     + +F  M+  GV  +   F   + AC   
Sbjct: 328 KKMFNMMDYKDKLSWTSMITGYGMNGYANESIQLFTSMIHAGVHPDHVVFLGLICACNHG 387

Query: 228 GWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLITWNT 285
           G V  G     +   ++    N  +   + ++  R   L +A      M    D   W  
Sbjct: 388 GLVDEGWNFFRSMTSEYNLQPNKEIYGCVTNLLARAGRLREAFDLIHRMPFAPDETVWGA 447

Query: 286 II 287
           ++
Sbjct: 448 LL 449


>gi|57899090|dbj|BAD86909.1| putative PPR986-12 [Oryza sativa Japonica Group]
          Length = 560

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 253/549 (46%), Positives = 361/549 (65%), Gaps = 5/549 (0%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108
           AT LI S    G +  AR LFDEMPERDVV+WT M++GY S     +A  VF  MV    
Sbjct: 6   ATTLISSLCSRGAVCHARALFDEMPERDVVAWTAMLSGYASNGLRREALDVFRRMVAAGA 65

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
            PN +TLSSVL AC+G  + + A  +H +A++ G++   YV N+L+D YA+    + +AR
Sbjct: 66  APNEYTLSSVLTACRGPCAPAMAMPLHAVAVRRGVDRMPYVVNALIDSYASLAEGVVDAR 125

Query: 169 LVFNDM-KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
            +F+ +   +   SWT++I GYA  G    GL +FK ML +GVE++ ++ SIA+ AC   
Sbjct: 126 RLFDALGSGRTAASWTSMIAGYARWGQERTGLRLFKTMLKDGVELSTFACSIALHACTLV 185

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  G+ +H   IK     NL V+NS++DMYC    + DA   FD   E++LITWNT+I
Sbjct: 186 IDLCLGQQLHLQCIKKALDVNLAVVNSLIDMYCTCARILDARSLFDGTPERNLITWNTMI 245

Query: 288 AGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           AGY +      L +  +M  E   PNCFT TSI +ACA LAAL CG+QVH  ++RR    
Sbjct: 246 AGYSQCDPLMALQLLLEMNDE---PNCFTLTSITSACADLAALRCGKQVHGAVLRRSYSD 302

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           +L + NAL+DMY+KCG+I++++ +F  M  +D  +WTSM+ GYG +G+G EA++LF  M+
Sbjct: 303 DLQMGNALVDMYSKCGSITNAKNVFDRMGCKDKFSWTSMIAGYGMNGYGNEAVQLFSSMI 362

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRV 466
            +GV PD +VF++++++CSHAGLVDEG  +F+SM N+YN+ PNKE+YG VV+LL RAGR+
Sbjct: 363 HAGVHPDHVVFLSLISSCSHAGLVDEGWNFFRSMINEYNLQPNKEVYGSVVNLLARAGRL 422

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
           +EA +LI +MPF PDE VWG LLGA K H    +G+LAA ++ ++ P+ +  YI+L++IY
Sbjct: 423 REALDLIDTMPFAPDEYVWGALLGASKMHNNVEMGRLAARKITEINPDDVKNYIMLASIY 482

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           AA  KW E+A  R+ +RG+GS+KE G+SWIEV DK+  F A D           VL +L 
Sbjct: 483 AAGSKWGEYAFTRRSLRGIGSRKEAGISWIEVMDKMYSFTAADSSSPQVCLADEVLHILS 542

Query: 587 RHMNETAYE 595
           +HM++   E
Sbjct: 543 QHMDDVGSE 551



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 136/282 (48%), Gaps = 12/282 (4%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +  +LI  Y     I +AR+LFD  PER++++W  MIAGY+  +    A  + +EM  N+
Sbjct: 209 VVNSLIDMYCTCARILDARSLFDGTPERNLITWNTMIAGYSQCD-PLMALQLLLEM--ND 265

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
             PN FTL+S+  AC  + +L     VHG  ++      + + N+L+D+Y+ C  S+ NA
Sbjct: 266 -EPNCFTLTSITSACADLAALRCGKQVHGAVLRRSYSDDLQMGNALVDMYSKCG-SITNA 323

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           + VF+ M  K+  SWT++I GY  +G G   + +F  M+  GV  +   F   + +C+  
Sbjct: 324 KNVFDRMGCKDKFSWTSMIAGYGMNGYGNEAVQLFSSMIHAGVHPDHVVFLSLISSCSHA 383

Query: 228 GWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLITWNT 285
           G V  G     + + ++    N  V  S++++  R   L +A    D M    D   W  
Sbjct: 384 GLVDEGWNFFRSMINEYNLQPNKEVYGSVVNLLARAGRLREALDLIDTMPFAPDEYVWGA 443

Query: 286 IIAGYEKSGSSECLNMFSKMKSERFSP----NCFTFTSIIAA 323
           ++   +   + E +   +  K    +P    N     SI AA
Sbjct: 444 LLGASKMHNNVE-MGRLAARKITEINPDDVKNYIMLASIYAA 484


>gi|125525521|gb|EAY73635.1| hypothetical protein OsI_01524 [Oryza sativa Indica Group]
          Length = 560

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 252/549 (45%), Positives = 360/549 (65%), Gaps = 5/549 (0%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108
           AT  I S    G +  AR LFDEMPERDVV+WT M++GY S     +A  VF  MV    
Sbjct: 6   ATTFISSLCSRGAVCHARALFDEMPERDVVAWTAMLSGYASNGLRREALDVFRRMVAAGA 65

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
            PN +TLSSVL AC+G  + + A  +H +A++ G++   YV N+L+D YA+    + +AR
Sbjct: 66  APNEYTLSSVLTACRGPCAPAMAMPLHAVAVRRGVDRMPYVVNALIDSYASLAEGVVDAR 125

Query: 169 LVFNDM-KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
            +F+ +   +   SWT++I GYA  G    GL +FK ML +GVE++ ++ SIA+ AC   
Sbjct: 126 RLFDALGSGRTAASWTSMIAGYARWGQERTGLRLFKTMLKDGVELSTFACSIALHACTLV 185

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  G+ +H   IK     NL V+NS++DMYC    + DA   FD   E++LITWNT+I
Sbjct: 186 IDLCLGQQLHLQCIKKALDVNLAVVNSLIDMYCTCARILDARSLFDGTPERNLITWNTMI 245

Query: 288 AGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           AGY +      L +  +M  E   PNCFT TSI +ACA LAAL CG+QVH  ++RR    
Sbjct: 246 AGYSQCDPLMALQLLLEMNDE---PNCFTLTSITSACADLAALRCGKQVHGAVLRRSYSD 302

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           +L + NAL+DMY+KCG+I++++ +F  M  +D  +WTSM+ GYG +G+G EA++LF  M+
Sbjct: 303 DLQMGNALVDMYSKCGSITNAKNVFDRMGCKDKFSWTSMIAGYGMNGYGNEAVQLFSSMI 362

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRV 466
            +GV PD +VF++++++CSHAGLVDEG  +F+SM N+YN+ PNKE+YG VV+LL RAGR+
Sbjct: 363 HAGVHPDHVVFLSLISSCSHAGLVDEGWNFFRSMINEYNLQPNKEVYGSVVNLLARAGRL 422

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
           +EA +LI +MPF PDE VWG LLGA K H    +G+LAA ++ ++ P+ +  YI+L++IY
Sbjct: 423 REALDLIDTMPFAPDEYVWGALLGASKMHNNVEMGRLAARKITEINPDDVKNYIMLASIY 482

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           AA  KW E+A  R+ +RG+GS+KE G+SWIEV DK+  F A D           VL +L 
Sbjct: 483 AAGSKWGEYAFTRRSLRGIGSRKEAGISWIEVMDKMYSFTAADSSSPQVCLADEVLHILS 542

Query: 587 RHMNETAYE 595
           +HM++   E
Sbjct: 543 QHMDDVGSE 551



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 136/282 (48%), Gaps = 12/282 (4%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +  +LI  Y     I +AR+LFD  PER++++W  MIAGY+  +    A  + +EM  N+
Sbjct: 209 VVNSLIDMYCTCARILDARSLFDGTPERNLITWNTMIAGYSQCD-PLMALQLLLEM--ND 265

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
             PN FTL+S+  AC  + +L     VHG  ++      + + N+L+D+Y+ C  S+ NA
Sbjct: 266 -EPNCFTLTSITSACADLAALRCGKQVHGAVLRRSYSDDLQMGNALVDMYSKCG-SITNA 323

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           + VF+ M  K+  SWT++I GY  +G G   + +F  M+  GV  +   F   + +C+  
Sbjct: 324 KNVFDRMGCKDKFSWTSMIAGYGMNGYGNEAVQLFSSMIHAGVHPDHVVFLSLISSCSHA 383

Query: 228 GWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLITWNT 285
           G V  G     + + ++    N  V  S++++  R   L +A    D M    D   W  
Sbjct: 384 GLVDEGWNFFRSMINEYNLQPNKEVYGSVVNLLARAGRLREALDLIDTMPFAPDEYVWGA 443

Query: 286 IIAGYEKSGSSECLNMFSKMKSERFSP----NCFTFTSIIAA 323
           ++   +   + E +   +  K    +P    N     SI AA
Sbjct: 444 LLGASKMHNNVE-MGRLAARKITEINPDDVKNYIMLASIYAA 484


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 221/565 (39%), Positives = 345/565 (61%), Gaps = 3/565 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I+ T L   Y   G +E AR +FD MP+RDVVSW  +IAGY+      +A  +F EM  N
Sbjct: 156 IVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVN 215

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + PN+ TL SV+  C  + +L     +H  AI+ G+E  + V N L+++YA C  +++ 
Sbjct: 216 GIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCG-NVNT 274

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  +F  M  ++  SW  +I GY+ +   +  L  F  M + G++ N  +    + ACA 
Sbjct: 275 AHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAH 334

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  G+ IH   I+ GF SN  V N++++MY +   ++ A + F+ M +K+++ WN I
Sbjct: 335 LFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAI 394

Query: 287 IAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+GY + G   E L +F +M+++   P+ F   S++ ACA   AL  G+Q+H   +R G 
Sbjct: 395 ISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGF 454

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           + N+ +   L+D+YAKCGN++ +QK+F  M ++D+V+WT+M++ YG HGHG++A+ LF +
Sbjct: 455 ESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSK 514

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAG 464
           M ++G + D I F A+LTACSHAGLVD+GL+YF+ M +DY + P  E Y C+VDLLGRAG
Sbjct: 515 MQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAG 574

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
            + EA  +IK+M  +PD +VWG LLGAC+ H    LG+ AA  + +L P+  G Y++LSN
Sbjct: 575 HLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSN 634

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           IYA   +WE+ AK RK+M+  G KK+ G S + V   V  F+  D+    ++ +Y +LE+
Sbjct: 635 IYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAMLEI 694

Query: 585 LIRHMNETAYEPDIDCLIHDLEGET 609
           L   M +  Y P+ +  + D+E E 
Sbjct: 695 LYEQMRKAGYVPNTNLALQDVEEEA 719



 Score =  269 bits (687), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 153/466 (32%), Positives = 243/466 (52%), Gaps = 20/466 (4%)

Query: 44  GPSILATNLIKSYFDEGLIEEAR--------TLFDEMPERD-VVSWTVMIAGYTSFNCHN 94
           GPS L T+ + +      ++  R        T F +   R+  V W   I GY      N
Sbjct: 43  GPSPLPTSTVVAQLRRNKVKTTREVSACANQTQFTQTDIRNNAVVWKETIIGYVKNGFWN 102

Query: 95  QAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLM 154
           +A  ++ +M R  +NP+     SV+KAC     L     VH   I  G E  + V  +L 
Sbjct: 103 KALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALA 162

Query: 155 DVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP 214
            +Y T C S++NAR VF+ M  ++ VSW  +I GY+ +G  Y  L +F EM + G++ N 
Sbjct: 163 SMY-TKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNS 221

Query: 215 YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE 274
            +    +  CA    +  GK IH   I+ G  S++ V+N +++MY +   ++ A++ F+ 
Sbjct: 222 STLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFER 281

Query: 275 MTEKDLITWNTIIAGYE-KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG 333
           M  +D+ +WN II GY   S   E L  F++M+     PN  T  S++ ACA L AL  G
Sbjct: 282 MPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQG 341

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
           QQ+H   +R G + N  + NAL++MYAKCGN++ + K+F  M  +++V W +++ GY  H
Sbjct: 342 QQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQH 401

Query: 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE-- 451
           GH  EA+ LF EM   G++PD    ++VL AC+H   +++G    K ++ Y +    E  
Sbjct: 402 GHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQG----KQIHGYTIRSGFESN 457

Query: 452 -IYGC-VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            + G  +VD+  + G V  A +L + MP + D   W  ++ A   H
Sbjct: 458 VVVGTGLVDIYAKCGNVNTAQKLFERMP-EQDVVSWTTMILAYGIH 502



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 104/348 (29%), Positives = 183/348 (52%), Gaps = 4/348 (1%)

Query: 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIH 237
           N V W   I GY  +G     L ++ +M   G+  +   F   ++AC S   +  G+ +H
Sbjct: 84  NAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVH 143

Query: 238 AAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS- 296
             +I  GF S++ V  ++  MY +   L +A Q FD M ++D+++WN IIAGY ++G   
Sbjct: 144 EDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPY 203

Query: 297 ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALI 356
           E L +FS+M+     PN  T  S++  CA L AL  G+Q+H   +R G++ ++ + N L+
Sbjct: 204 EALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLV 263

Query: 357 DMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI 416
           +MYAKCGN++ + K+F  M  RD+ +W +++ GY  +    EA+  F+ M   G++P+ I
Sbjct: 264 NMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSI 323

Query: 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
             ++VL AC+H   +++G +            N  +   +V++  + G V  AY+L + M
Sbjct: 324 TMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERM 383

Query: 477 PFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNMMGTYIIL 522
           P K +   W  ++    +H  P+  L     ++   +KP+      +L
Sbjct: 384 P-KKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVL 430



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 160/309 (51%), Gaps = 18/309 (5%)

Query: 266 SDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAAC 324
           ++  Q+       + + W   I GY K+G  ++ L ++ +M+    +P+   F S+I AC
Sbjct: 71  ANQTQFTQTDIRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKAC 130

Query: 325 ATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWT 384
            + + L  G++VH  I+ RG + ++ +  AL  MY KCG++ +++++F  M  RD+V+W 
Sbjct: 131 GSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWN 190

Query: 385 SMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDY 444
           +++ GY  +G   EA+ LF EM  +G++P+    ++V+  C+H   +++G    K ++ Y
Sbjct: 191 AIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQG----KQIHCY 246

Query: 445 NVNPNKE----IYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG--ACKEHRLP 498
            +    E    +   +V++  + G V  A++L + MP + D + W  ++G  +       
Sbjct: 247 AIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIR-DVASWNAIIGGYSLNSQHHE 305

Query: 499 NLGKLAALRVLDLKPNMMGTYIIL---SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSW 555
            L     ++V  +KPN +    +L   ++++A E + ++   +  I  G  S   VG + 
Sbjct: 306 ALAFFNRMQVRGIKPNSITMVSVLPACAHLFALE-QGQQIHGY-AIRSGFESNDVVGNAL 363

Query: 556 IEVRDKVCG 564
           + +  K CG
Sbjct: 364 VNMYAK-CG 371


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/560 (38%), Positives = 331/560 (59%), Gaps = 2/560 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + T ++  Y   G +E+A  +FD +  R+VVSWT MIAG+      ++A+  F +M+ + 
Sbjct: 349 VGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESG 408

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + PN  T  S+L AC    +L     +    I+ G      V  +L+ +YA C  S+ +A
Sbjct: 409 IEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCG-SLKDA 467

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             VF  +  +N V+W  +IT Y         L  F+ +L EG++ N  +F+  +  C S+
Sbjct: 468 HRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSS 527

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  GK +H  ++K G  S+L V N+++ M+     L  A   F++M ++DL++WNTII
Sbjct: 528 DSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTII 587

Query: 288 AGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           AG+ + G ++   + F  M+     P+  TFT ++ ACA+  AL+ G+++HA I     D
Sbjct: 588 AGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFD 647

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            ++ +   LI MY KCG+I D+ ++F ++  +++ +WTSM+ GY  HG GKEA+ELF +M
Sbjct: 648 CDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQM 707

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
            + GV+PD I F+  L+AC+HAGL++EGL +F+SM ++N+ P  E YGC+VDL GRAG +
Sbjct: 708 QQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFNIEPRMEHYGCMVDLFGRAGLL 767

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            EA E I  M  +PD  VWG LLGAC+ H    L + AA + L+L PN  G ++ILSNIY
Sbjct: 768 NEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIY 827

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           AA G W+E AK RK+M   G  K+ G SWIEV  KV  F ++DK    T+ ++  LE L 
Sbjct: 828 AAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELERLH 887

Query: 587 RHMNETAYEPDIDCLIHDLE 606
             M +  Y PD   ++HD+E
Sbjct: 888 MEMRQLGYVPDTRYVLHDVE 907



 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 130/469 (27%), Positives = 242/469 (51%), Gaps = 13/469 (2%)

Query: 29  VKKSSIQSDPPLIPKGPSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGY 87
           +KKS +Q         P I   N LI  Y   G    A+ +FD+M E+DV SW +++ GY
Sbjct: 136 IKKSGVQ---------PDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGY 186

Query: 88  TSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSI 147
                + +A+ +  +MV++ V P+  T  S+L AC   +++     ++ + +K G +  +
Sbjct: 187 VQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDL 246

Query: 148 YVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLL 207
           +V  +L++++  C   + +A  VF+++  ++ V+WT++ITG A  G       +F+ M  
Sbjct: 247 FVGTALINMHIKCG-DIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEE 305

Query: 208 EGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSD 267
           EGV+ +  +F   +RAC     +  GK +HA + + G+ + + V  +IL MY +   + D
Sbjct: 306 EGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMED 365

Query: 268 ANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACAT 326
           A + FD +  +++++W  +IAG+ + G   E    F+KM      PN  TF SI+ AC++
Sbjct: 366 ALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSS 425

Query: 327 LAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSM 386
            +AL  GQQ+   I+  G   +  +  AL+ MYAKCG++ D+ ++F ++S +++V W +M
Sbjct: 426 PSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAM 485

Query: 387 MIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV 446
           +  Y  H     A+  F  ++K G++P+   F ++L  C  +  ++ G      +    +
Sbjct: 486 ITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGL 545

Query: 447 NPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
             +  +   +V +    G +  A  L   MP K D   W  ++    +H
Sbjct: 546 ESDLHVSNALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQH 593



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 119/449 (26%), Positives = 239/449 (53%), Gaps = 9/449 (2%)

Query: 94  NQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSL 153
           N+A  V   +  + +     T S++L+ C   K+L +   ++    K G++  I++ N+L
Sbjct: 92  NEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTL 151

Query: 154 MDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMN 213
           +++YA C  ++ +A+ +F+DM+ K+  SW  L+ GY   G       + ++M+ + V+ +
Sbjct: 152 INMYAKCGNTI-SAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPD 210

Query: 214 PYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFD 273
             +F   + ACA    V  G+ ++  ++K G+ ++L V  ++++M+ +   + DA + FD
Sbjct: 211 KRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFD 270

Query: 274 EMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSC 332
            +  +DL+TW ++I G  + G   +  N+F +M+ E   P+   F S++ AC    AL  
Sbjct: 271 NLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQ 330

Query: 333 GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA 392
           G++VHA +   G D  + +  A++ MY KCG++ D+ ++F  +  R++V+WT+M+ G+  
Sbjct: 331 GKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQ 390

Query: 393 HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEI 452
           HG   EA   F++M++SG+ P+R+ FM++L ACS    +  G +    + +     +  +
Sbjct: 391 HGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRV 450

Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLD 510
              ++ +  + G +K+A+ + + +  K +   W  ++ A  +H   +  L    AL    
Sbjct: 451 RTALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWNAMITAYVQHEQYDNALATFQALLKEG 509

Query: 511 LKPNMMGTYIILSNIYAAE----GKWEEF 535
           +KPN      IL+   +++    GKW  F
Sbjct: 510 IKPNSSTFTSILNVCKSSDSLELGKWVHF 538



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 168/308 (54%), Gaps = 7/308 (2%)

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
           +VF D+K  +      ++   + +G     + V + +    +++   ++S  ++ C    
Sbjct: 67  VVFADIK--DTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFK 124

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            +  G+ I+  + K G   ++ + N++++MY +      A Q FD+M EKD+ +WN ++ 
Sbjct: 125 NLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLG 184

Query: 289 GYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           GY + G   E   +  +M  +   P+  TF S++ ACA    +  G++++  I++ G D 
Sbjct: 185 GYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDT 244

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           +L +  ALI+M+ KCG+I D+ K+F  +  RDLVTWTSM+ G   HG  K+A  LF  M 
Sbjct: 245 DLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRME 304

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIY--GCVVDLLGRAGR 465
           + GV+PD++ F+++L AC+H   +++G K    M +  V  + EIY    ++ +  + G 
Sbjct: 305 EEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKE--VGWDTEIYVGTAILSMYTKCGS 362

Query: 466 VKEAYELI 473
           +++A E+ 
Sbjct: 363 MEDALEVF 370



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 1/95 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++ T LI  Y   G IE+A  +F ++P+++V SWT MI GY       +A  +F +M + 
Sbjct: 651 LVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQE 710

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKE 141
            V P+  T    L AC     L    L H  ++KE
Sbjct: 711 GVKPDWITFVGALSAC-AHAGLIEEGLHHFQSMKE 744


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/560 (38%), Positives = 331/560 (59%), Gaps = 2/560 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + T ++  Y   G +E+A  +FD +  R+VVSWT MIAG+      ++A+  F +M+ + 
Sbjct: 349 VGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESG 408

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + PN  T  S+L AC    +L     +    I+ G      V  +L+ +YA C  S+ +A
Sbjct: 409 IEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCG-SLKDA 467

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             VF  +  +N V+W  +IT Y         L  F+ +L EG++ N  +F+  +  C S+
Sbjct: 468 HRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSS 527

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  GK +H  ++K G  S+L V N+++ M+     L  A   F++M ++DL++WNTII
Sbjct: 528 DSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTII 587

Query: 288 AGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           AG+ + G ++   + F  M+     P+  TFT ++ ACA+  AL+ G+++HA I     D
Sbjct: 588 AGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFD 647

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            ++ +   LI MY KCG+I D+ ++F ++  +++ +WTSM+ GY  HG GKEA+ELF +M
Sbjct: 648 CDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQM 707

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
            + GV+PD I F+  L+AC+HAGL++EGL +F+SM ++N+ P  E YGC+VDL GRAG +
Sbjct: 708 QQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFNIEPRMEHYGCMVDLFGRAGLL 767

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            EA E I  M  +PD  VWG LLGAC+ H    L + AA + L+L PN  G ++ILSNIY
Sbjct: 768 NEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIY 827

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           AA G W+E AK RK+M   G  K+ G SWIEV  KV  F ++DK    T+ ++  LE L 
Sbjct: 828 AAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELERLH 887

Query: 587 RHMNETAYEPDIDCLIHDLE 606
             M +  Y PD   ++HD+E
Sbjct: 888 MEMRQLGYVPDTRYVLHDVE 907



 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 130/469 (27%), Positives = 242/469 (51%), Gaps = 13/469 (2%)

Query: 29  VKKSSIQSDPPLIPKGPSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGY 87
           +KKS +Q         P I   N LI  Y   G    A+ +FD+M E+DV SW +++ GY
Sbjct: 136 IKKSGVQ---------PDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGY 186

Query: 88  TSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSI 147
                + +A+ +  +MV++ V P+  T  S+L AC   +++     ++ + +K G +  +
Sbjct: 187 VQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDL 246

Query: 148 YVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLL 207
           +V  +L++++  C   + +A  VF+++  ++ V+WT++ITG A  G       +F+ M  
Sbjct: 247 FVGTALINMHIKCG-DIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEE 305

Query: 208 EGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSD 267
           EGV+ +  +F   +RAC     +  GK +HA + + G+ + + V  +IL MY +   + D
Sbjct: 306 EGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMED 365

Query: 268 ANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACAT 326
           A + FD +  +++++W  +IAG+ + G   E    F+KM      PN  TF SI+ AC++
Sbjct: 366 ALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSS 425

Query: 327 LAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSM 386
            +AL  GQQ+   I+  G   +  +  AL+ MYAKCG++ D+ ++F ++S +++V W +M
Sbjct: 426 PSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAM 485

Query: 387 MIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV 446
           +  Y  H     A+  F  ++K G++P+   F ++L  C  +  ++ G      +    +
Sbjct: 486 ITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGL 545

Query: 447 NPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
             +  +   +V +    G +  A  L   MP K D   W  ++    +H
Sbjct: 546 ESDLHVSNALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQH 593



 Score =  218 bits (554), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 119/449 (26%), Positives = 239/449 (53%), Gaps = 9/449 (2%)

Query: 94  NQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSL 153
           N+A  V   +  + +     T S++L+ C   K+L +   ++    K G++  I++ N+L
Sbjct: 92  NEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTL 151

Query: 154 MDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMN 213
           +++YA C  ++ +A+ +F+DM+ K+  SW  L+ GY   G       + ++M+ + V+ +
Sbjct: 152 INMYAKCGNTI-SAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPD 210

Query: 214 PYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFD 273
             +F   + ACA    V  G+ ++  ++K G+ ++L V  ++++M+ +   + DA + FD
Sbjct: 211 KRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFD 270

Query: 274 EMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSC 332
            +  +DL+TW ++I G  + G   +  N+F +M+ E   P+   F S++ AC    AL  
Sbjct: 271 NLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQ 330

Query: 333 GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA 392
           G++VHA +   G D  + +  A++ MY KCG++ D+ ++F  +  R++V+WT+M+ G+  
Sbjct: 331 GKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQ 390

Query: 393 HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEI 452
           HG   EA   F++M++SG+ P+R+ FM++L ACS    +  G +    + +     +  +
Sbjct: 391 HGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRV 450

Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLD 510
              ++ +  + G +K+A+ + + +  K +   W  ++ A  +H   +  L    AL    
Sbjct: 451 RTALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWNAMITAYVQHEQYDNALATFQALLKEG 509

Query: 511 LKPNMMGTYIILSNIYAAE----GKWEEF 535
           +KPN      IL+   +++    GKW  F
Sbjct: 510 IKPNSSTFTSILNVCKSSDSLELGKWVHF 538



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 168/308 (54%), Gaps = 7/308 (2%)

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
           +VF D+K  +      ++   + +G     + V + +    +++   ++S  ++ C    
Sbjct: 67  VVFADIK--DTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFK 124

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            +  G+ I+  + K G   ++ + N++++MY +      A Q FD+M EKD+ +WN ++ 
Sbjct: 125 NLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLG 184

Query: 289 GYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           GY + G   E   +  +M  +   P+  TF S++ ACA    +  G++++  I++ G D 
Sbjct: 185 GYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDT 244

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           +L +  ALI+M+ KCG+I D+ K+F  +  RDLVTWTSM+ G   HG  K+A  LF  M 
Sbjct: 245 DLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRME 304

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIY--GCVVDLLGRAGR 465
           + GV+PD++ F+++L AC+H   +++G K    M +  V  + EIY    ++ +  + G 
Sbjct: 305 EEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKE--VGWDTEIYVGTAILSMYTKCGS 362

Query: 466 VKEAYELI 473
           +++A E+ 
Sbjct: 363 MEDALEVF 370



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 1/95 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++ T LI  Y   G IE+A  +F ++P+++V SWT MIAGY       +A  +F +M + 
Sbjct: 651 LVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQE 710

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKE 141
            V P+  T    L AC     L    L H  ++KE
Sbjct: 711 GVKPDWITFVGALSAC-AHAGLIEEGLHHFQSMKE 744


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/560 (38%), Positives = 347/560 (61%), Gaps = 3/560 (0%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108
           A  L+  Y   G + +A ++F+++ + D+VSW  +IAG      H QA  +  +M R+ +
Sbjct: 296 ANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGI 355

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
            PN FTLSS LKAC GM        +H   +K  +E  ++V   L+D+Y+ C + +++AR
Sbjct: 356 CPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDL-LEDAR 414

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
           + FN +  K+ ++W  +I+GY+        L +F EM  EG+  N  + S  +++ A   
Sbjct: 415 MAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQ 474

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            V   + +H   +K GF S++ V+NS++D Y +   + DA + F+E T  DL+++ ++I 
Sbjct: 475 VVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMIT 534

Query: 289 GYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
            Y + G   E L +F +M+     P+ F  +S++ ACA L+A   G+Q+H  I++ G   
Sbjct: 535 AYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVL 594

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           ++   N+L++MYAKCG+I D+ + FSE+++R +V+W++M+ G   HGHG++A++LF++M+
Sbjct: 595 DIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQML 654

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRV 466
           K GV P+ I  ++VL AC+HAGLV E   YF+SM + +   P +E Y C++DLLGRAG++
Sbjct: 655 KEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKI 714

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            EA EL+  MPF+ + SVWG LLGA + H+   LG+ AA  +  L+P   GT+++L+NIY
Sbjct: 715 NEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIY 774

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           A+ GKWE  A+ R++MR    KKE GMSWIEV+DKV  F+  D+    +Q +Y  L+ L 
Sbjct: 775 ASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELS 834

Query: 587 RHMNETAYEPDIDCLIHDLE 606
             M++  Y P ++  +HD+E
Sbjct: 835 DLMDKAGYVPMVEIDLHDVE 854



 Score =  251 bits (641), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 142/454 (31%), Positives = 245/454 (53%), Gaps = 3/454 (0%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           +G   +A  L+  Y       +++ LFDE+PER+VVSW  + + Y   +   +A  +F E
Sbjct: 189 EGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYE 248

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           MV + + PN F+LSS++ AC G++  S   ++HG  IK G +   +  N+L+D+YA    
Sbjct: 249 MVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVG- 307

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            + +A  VF  +K  + VSW  +I G     +    L +  +M   G+  N ++ S A++
Sbjct: 308 DLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALK 367

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           ACA  G    G+ +H++++K    S+L V   ++DMY + D L DA   F+ + EKDLI 
Sbjct: 368 ACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIA 427

Query: 283 WNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           WN II+GY +     E L++F +M  E    N  T ++I+ + A L  +   +QVH   V
Sbjct: 428 WNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSV 487

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           + G   ++ + N+LID Y KC ++ D+++IF E +  DLV++TSM+  Y  +G G+EA++
Sbjct: 488 KSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALK 547

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461
           LF EM    ++PDR V  ++L AC++    ++G +    +  Y    +      +V++  
Sbjct: 548 LFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYA 607

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           + G + +A      +  +   S W  ++G   +H
Sbjct: 608 KCGSIDDAGRAFSELTERGIVS-WSAMIGGLAQH 640



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 157/516 (30%), Positives = 254/516 (49%), Gaps = 44/516 (8%)

Query: 29  VKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYT 88
           + KS +  DP +          +LI  Y        AR L DE  E D+VSW+ +I+GY 
Sbjct: 82  ITKSGLSDDPSI--------RNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYA 133

Query: 89  SFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIY 148
                  A   F EM    V  N FT SSVLKAC  +K L     VHG+ +  G EG ++
Sbjct: 134 QNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVF 193

Query: 149 VENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE 208
           V N+L+ +YA C   +D+ RL F+++  +N VSW  L + Y         +G+F EM+L 
Sbjct: 194 VANTLVVMYAKCDEFLDSKRL-FDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLS 252

Query: 209 GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDA 268
           G++ N +S S  V AC      S GK+IH  +IK G+  +    N+++DMY +   L+DA
Sbjct: 253 GIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADA 312

Query: 269 NQYFDEMTEKDLITWNTIIAG-YEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATL 327
              F+++ + D+++WN +IAG        + L +  +MK     PN FT +S + ACA +
Sbjct: 313 ISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGM 372

Query: 328 AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMM 387
                G+Q+H+ +++  ++ +L ++  L+DMY+KC  + D++  F+ + ++DL+ W +++
Sbjct: 373 GLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAII 432

Query: 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD-----EGLKYFKSMN 442
            GY  +    EA+ LF EM K G+  ++     +L + +   +V       GL      +
Sbjct: 433 SGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFH 492

Query: 443 D--YNVNPNKEIYG--------------CVV-DLL---------GRAGRVKEAYEL---I 473
              Y VN   + YG              C + DL+          + G+ +EA +L   +
Sbjct: 493 SDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEM 552

Query: 474 KSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVL 509
           + M  KPD  V   LL AC        GK   + +L
Sbjct: 553 QDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHIL 588



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 116/414 (28%), Positives = 217/414 (52%), Gaps = 3/414 (0%)

Query: 83  MIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG 142
           +I     F+   Q   +   + +    P + + S +L  C   KSL     +H    K G
Sbjct: 27  LIQTVPQFSQDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSG 86

Query: 143 LEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVF 202
           L     + N L+++Y+ C  +   AR + ++    + VSW+ LI+GYA +G G G L  F
Sbjct: 87  LSDDPSIRNHLINLYSKC-RNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAF 145

Query: 203 KEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRF 262
            EM L GV+ N ++FS  ++AC+    +  GK +H  V+  GF  ++ V N+++ MY + 
Sbjct: 146 HEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKC 205

Query: 263 DCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSII 321
           D   D+ + FDE+ E+++++WN + + Y +     E + +F +M      PN F+ +S++
Sbjct: 206 DEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMV 265

Query: 322 AACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLV 381
            AC  L   S G+ +H  +++ G D +   ANAL+DMYAK G+++D+  +F ++   D+V
Sbjct: 266 NACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIV 325

Query: 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441
           +W +++ G   H H ++A+EL  +M +SG+ P+     + L AC+  GL + G +   S+
Sbjct: 326 SWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSL 385

Query: 442 NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
              ++  +  +   +VD+  +   +++A      +P K D   W  ++    ++
Sbjct: 386 MKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEK-DLIAWNAIISGYSQY 438



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 108/376 (28%), Positives = 197/376 (52%), Gaps = 33/376 (8%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            ++  L+  Y    L+E+AR  F+ +PE+D+++W  +I+GY+ +    +A ++FVEM + 
Sbjct: 395 FVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKE 454

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            +  N  TLS++LK+  G++ +     VHG+++K G    IYV NSL+D Y  C   +++
Sbjct: 455 GIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCS-HVED 513

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSF--SIAVRAC 224
           A  +F +    + VS+T++IT YA  G G   L +F EM  + +E+ P  F  S  + AC
Sbjct: 514 AERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEM--QDMELKPDRFVCSSLLNAC 571

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           A+      GK +H  ++K+GF  ++   NS+++MY +   + DA + F E+TE+ +++W+
Sbjct: 572 ANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWS 631

Query: 285 TIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +I G  + G   + L +F++M  E  SPN  T  S++ AC            HAG+V  
Sbjct: 632 AMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACN-----------HAGLVTE 680

Query: 344 ------------GLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGY 390
                       G          +ID+  + G I+++ ++ ++M  + +   W +++   
Sbjct: 681 AKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAA 740

Query: 391 GAHGH---GKEAIELF 403
             H     G+ A E+ 
Sbjct: 741 RIHKDVELGRRAAEML 756


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/554 (40%), Positives = 341/554 (61%), Gaps = 5/554 (0%)

Query: 60  GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119
           G +E A  +FD MP+R+VV+WT+MI  +        A  +F++MV +   P+ FTLS V+
Sbjct: 93  GDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVV 152

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI--SMDNARLVFNDMKWK 177
            AC  M  LS     H + +K GL+  + V  SL+D+YA C    S+D+AR VF+ M   
Sbjct: 153 SACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVH 212

Query: 178 NDVSWTTLITGYAHSGN-GYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLI 236
           N +SWT +ITGY  SG      + +F EM+   V+ N ++FS  ++ACA+   +  G+ +
Sbjct: 213 NVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQV 272

Query: 237 HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS-GS 295
           +A V+K    S   V NS++ MY R   + +A + FD + EK+L+++NTI+  Y KS  S
Sbjct: 273 YALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNS 332

Query: 296 SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
            E   +F++++      N FTF S+++  +++ A+  G+Q+H+ I++ G   NL + NAL
Sbjct: 333 EEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNAL 392

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           I MY++CGNI  + ++F+EM D ++++WTSM+ G+  HG    A+E F +M+++GV P+ 
Sbjct: 393 ISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNE 452

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
           + ++AVL+ACSH GL+ EGLK+FKSM  ++ + P  E Y CVVDLLGR+G ++EA EL+ 
Sbjct: 453 VTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVN 512

Query: 475 SMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEE 534
           SMPFK D  V    LGAC+ H   +LGK AA  +L+  P+    YI+LSN++A+ G+WEE
Sbjct: 513 SMPFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQDPHDPAAYILLSNLHASAGQWEE 572

Query: 535 FAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAY 594
            A+ RK M+     KE G SWIEV +KV  F   D      Q +Y  L+ L   + E  Y
Sbjct: 573 VAEIRKKMKERNLTKEAGCSWIEVENKVHKFYVGDTSHPQAQEIYDELDQLALKIKELGY 632

Query: 595 EPDIDCLIHDLEGE 608
            P  D ++HD+E E
Sbjct: 633 IPSTDFVLHDVEEE 646



 Score =  211 bits (538), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 119/409 (29%), Positives = 223/409 (54%), Gaps = 6/409 (1%)

Query: 74  ERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAAL 133
           +RD+VSW+ +I+ Y +     +A + F +M+     PN +  + V +AC   +++S   +
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKI 63

Query: 134 VHGMAIKEG-LEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHS 192
           + G  +K G  E  + V  +L+D++      +++A  VF+ M  +N V+WT +IT +   
Sbjct: 64  IFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQL 123

Query: 193 GNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVM 252
           G     + +F +M+L G   + ++ S  V ACA  G +S G+  H  V+K G   ++ V 
Sbjct: 124 GFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVG 183

Query: 253 NSILDMY--CRFD-CLSDANQYFDEMTEKDLITWNTIIAGYEKSG--SSECLNMFSKMKS 307
            S++DMY  C  D  + DA + FD M   ++++W  II GY +SG    E + +F +M  
Sbjct: 184 CSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQ 243

Query: 308 ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISD 367
            +  PN FTF+S++ ACA L+ +  G+QV+A +V+  L     + N+LI MY++CGN+ +
Sbjct: 244 GQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMEN 303

Query: 368 SQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH 427
           ++K F  + +++LV++ +++  Y    + +EA ELF+E+  +G   +   F ++L+  S 
Sbjct: 304 ARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASS 363

Query: 428 AGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
            G + +G +    +       N  I   ++ +  R G ++ A+++   M
Sbjct: 364 IGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEM 412



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 133/448 (29%), Positives = 232/448 (51%), Gaps = 29/448 (6%)

Query: 6   LLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEA 65
           LLS    FHC             V KS +  D   +  G S++  ++      +G +++A
Sbjct: 160 LLSLGRQFHC------------LVMKSGLDLD---VCVGCSLV--DMYAKCVADGSVDDA 202

Query: 66  RTLFDEMPERDVVSWTVMIAGYT-SFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           R +FD MP  +V+SWT +I GY  S  C  +A  +F+EMV+ +V PN FT SSVLKAC  
Sbjct: 203 RKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACAN 262

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTT 184
           +  +     V+ + +K  L     V NSL+ +Y+ C  +M+NAR  F+ +  KN VS+ T
Sbjct: 263 LSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCG-NMENARKAFDVLFEKNLVSYNT 321

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG 244
           ++  YA S N      +F E+   G  +N ++F+  +   +S G +  G+ IH+ ++K G
Sbjct: 322 IVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSG 381

Query: 245 FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFS 303
           F SNL + N+++ MY R   +  A Q F+EM + ++I+W ++I G+ K G ++  L  F 
Sbjct: 382 FKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFH 441

Query: 304 KMKSERFSPNCFTFTSIIAACATLAALSCG-QQVHAGIVRRGLDGNLALANALIDMYAKC 362
           KM     SPN  T+ ++++AC+ +  +S G +   +  V  G+   +     ++D+  + 
Sbjct: 442 KMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRS 501

Query: 363 GNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHGH---GKEAIELFDEMVKSGVRPDRIVF 418
           G++ ++ ++ + M  + D +   + +     HG+   GK A E+  E  +    P   + 
Sbjct: 502 GHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEMILE--QDPHDPAAYIL 559

Query: 419 MAVLTACSHAGLVDEGLKYFKSMNDYNV 446
           ++ L A   AG  +E  +  K M + N+
Sbjct: 560 LSNLHA--SAGQWEEVAEIRKKMKERNL 585


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 215/561 (38%), Positives = 336/561 (59%), Gaps = 3/561 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + + L+  Y   G I E R +F EMP R+VVSWT +I G      + +A   F EM R+ 
Sbjct: 153 VGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSR 212

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V  +++T +  LKAC    +L+    +H  A+K+G + S +V N+L  +Y  C   ++  
Sbjct: 213 VEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCG-KLEYG 271

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             +F  M  ++ VSWTT+IT     G     +  F  M    V  N Y+F+  +  CA+ 
Sbjct: 272 LTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANL 331

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             + +G+ +HA ++  G  ++L V NSI+ MY +   L+ ++  F EMT +D+++W+TII
Sbjct: 332 ARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTII 391

Query: 288 AGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           AGY + G  SE   + S M+ E   P  F   S+++AC  +A L  G+Q+HA ++  GL+
Sbjct: 392 AGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLE 451

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
               + +ALI+MY KCG+I ++ +IF    + D+V+WT+M+ GY  HG+ +E I+LF+++
Sbjct: 452 HTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKI 511

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGR 465
            + G+RPD + F+ VL+ACSHAGLVD G +YF +M+  Y ++P+KE YGC++DLL RAGR
Sbjct: 512 PRVGLRPDSVTFIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGR 571

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           + +A  +I++MPF  D+ VW  LL AC+ H     G+  A R+L L+PN  GT+I L+NI
Sbjct: 572 LSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANI 631

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           YA++GKW E A  RK+M+  G  KE G SWI+V+D V  F+A D+     + +Y +L++L
Sbjct: 632 YASKGKWREAADIRKLMKSKGVIKEPGWSWIKVKDLVFAFVAGDRSHPQGEDIYNMLDLL 691

Query: 586 IRHMNETAYEPDIDCLIHDLE 606
                      +   L +DLE
Sbjct: 692 ASRTELADCVQETGFLPYDLE 712



 Score =  271 bits (693), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 146/445 (32%), Positives = 249/445 (55%), Gaps = 4/445 (0%)

Query: 53  IKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM-VRNEVNPN 111
           +K     G +  AR +FD+M ++D +SWT +I+GY + N  ++A  +F  M V + +  +
Sbjct: 56  LKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRID 115

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
            F LS   KAC     ++   L+HG A+K GL  S++V ++L+D+Y T    +   R VF
Sbjct: 116 PFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMY-TKNGKIFEGRRVF 174

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           ++M  +N VSWT +ITG   +G     L  F EM    VE + Y+F+IA++ACA +G ++
Sbjct: 175 HEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALN 234

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
           +G+ IHA  +K GF  +  V N++  MY +   L      F++M+ +D+++W TII    
Sbjct: 235 YGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLV 294

Query: 292 KSGSSEC-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           + G  EC +  F +M+    SPN +TF ++I+ CA LA +  G+Q+HA I+  GL  +L+
Sbjct: 295 QMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLS 354

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           + N+++ MYAKCG ++ S  IF EM+ RD+V+W++++ GY   GH  EA EL   M   G
Sbjct: 355 VENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEG 414

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470
            +P      +VL+AC +  +++ G +    +    +     +   ++++  + G ++EA 
Sbjct: 415 PKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEAS 474

Query: 471 ELIKSMPFKPDESVWGPLLGACKEH 495
            +  +     D   W  ++    EH
Sbjct: 475 RIFDAAE-NDDIVSWTAMINGYAEH 498



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 213/414 (51%), Gaps = 41/414 (9%)

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAVR 222
           + NAR +F+ M  K+++SWTTLI+GY ++ +    L +FK M +E G+ ++P+  S+A +
Sbjct: 65  LGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAHK 124

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           AC     V++G+L+H   +K G  +++ V +++LDMY +   + +  + F EM  +++++
Sbjct: 125 ACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVS 184

Query: 283 WNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           W  II G  ++G + E L  FS+M   R   + +TF   + ACA   AL+ G+++HA  +
Sbjct: 185 WTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAM 244

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           ++G D +  +AN L  MY KCG +     +F +MS RD+V+WT+++      G  + A++
Sbjct: 245 KKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQ 304

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACS-----------HAGLVDEGLKYFKSMND------- 443
            F  M +S V P+   F AV++ C+           HA ++  GL    S+ +       
Sbjct: 305 AFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYA 364

Query: 444 -----------YNVNPNKEI--YGCVVDLLGRAGRVKEAYELIKSMPF---KPDESVWGP 487
                      ++    ++I  +  ++    + G V EA+EL+  M     KP E     
Sbjct: 365 KCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALAS 424

Query: 488 LLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS---NIYAAEGKWEEFAKF 538
           +L AC    +   GK     VL +   +  T ++LS   N+Y   G  EE ++ 
Sbjct: 425 VLSACGNMAILEHGKQLHAYVLSI--GLEHTAMVLSALINMYCKCGSIEEASRI 476



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 184/363 (50%), Gaps = 26/363 (7%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S +A  L   Y   G +E   TLF++M  RDVVSWT +I           A   F+ M  
Sbjct: 252 SFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRE 311

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           ++V+PN +T ++V+  C  +  +     +H + +  GL  S+ VENS+M +YA C   + 
Sbjct: 312 SDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCG-QLT 370

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           ++ ++F++M  ++ VSW+T+I GY+  G+      +   M +EG +   ++ +  + AC 
Sbjct: 371 SSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACG 430

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           +   +  GK +HA V+  G      V++++++MYC+   + +A++ FD     D+++W  
Sbjct: 431 NMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTA 490

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I GY + G S E +++F K+      P+  TF  +++AC+           HAG+V  G
Sbjct: 491 MINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACS-----------HAGLVDLG 539

Query: 345 LDGNLALAN------------ALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYG 391
                A++              +ID+  + G +SD++ +   M   RD V W++++    
Sbjct: 540 FRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACR 599

Query: 392 AHG 394
            HG
Sbjct: 600 VHG 602



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 137/274 (50%), Gaps = 9/274 (3%)

Query: 247 SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKM 305
           ++LP  N  L    +   L +A + FD+M++KD I+W T+I+GY   + SSE L +F  M
Sbjct: 47  TDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNM 106

Query: 306 KSE---RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362
           + E   R  P  F  +    AC   + ++ G+ +H   V+ GL  ++ + +AL+DMY K 
Sbjct: 107 RVESGLRIDP--FILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKN 164

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
           G I + +++F EM  R++V+WT+++ G    G+ KEA+  F EM +S V  D   F   L
Sbjct: 165 GKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIAL 224

Query: 423 TACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDE 482
            AC+ +G ++ G +          + +  +   +  +  + G+++    L + M  + D 
Sbjct: 225 KACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMR-DV 283

Query: 483 SVWGPLLGACKEHRLPNLGKLAALRVL--DLKPN 514
             W  ++    +         A +R+   D+ PN
Sbjct: 284 VSWTTIITTLVQMGQEECAVQAFIRMRESDVSPN 317


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/562 (38%), Positives = 343/562 (61%), Gaps = 4/562 (0%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T ++  Y     I++A  +FD MPERD+VSW  +IAG++      +A  + + M      
Sbjct: 186 TGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQR 245

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P++ TL +VL A   +  L     +HG AI+ G    + +  +L D+Y+ C  S++ ARL
Sbjct: 246 PDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCG-SVETARL 304

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           +F+ M  K  VSW +++ GY  +G     + VF++ML EG++    +   A+ ACA  G 
Sbjct: 305 IFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGD 364

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           +  GK +H  V +   GS++ VMNS++ MY +   +  A+  F+ +  +  ++WN +I G
Sbjct: 365 LERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILG 424

Query: 290 YEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           Y ++G  SE LN FS+MKS    P+ FT  S+I A A L+     + +H  I+R  LD N
Sbjct: 425 YAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKN 484

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           + +  AL+DMY+KCG I  ++K+F  +SDR ++TW +M+ GYG HG G+ A++LFD+M K
Sbjct: 485 IFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKK 544

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVK 467
             V P+ I +++V++ACSH+GLVDEGL++FKSM  DY + P+ + YG +VDLLGRAGR+K
Sbjct: 545 GAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIK 604

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527
           EA++ I++MP  P  +V+G +LGACK H+   +G+ AA ++ +L P+  G +++L+NIYA
Sbjct: 605 EAWDFIENMPISPGITVYGAMLGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYA 664

Query: 528 AEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIR 587
           +  KW + A+ RK M   G KK  G S +E+R++V  F +       ++ +Y  LE L+ 
Sbjct: 665 STSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVY 724

Query: 588 HMNETAYEPDIDCLIHDLEGET 609
            +    Y PD + LI D+E + 
Sbjct: 725 EIKAAGYVPDTN-LILDVEDDV 745



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 137/542 (25%), Positives = 250/542 (46%), Gaps = 21/542 (3%)

Query: 14  HCHKIPPIIKQSLQSVKKSSIQSDPPLIPKG---PSILATNLIKSYFDEGLIEEARTLFD 70
           H +K P  +   L +  K   Q  P +I  G     +  T L+  +   G I EA  +F+
Sbjct: 46  HVYKHPAAVLLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFE 105

Query: 71  EMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSN 130
            + ++    +  M+ GY   +    A      M  ++V P  +  + +LK C     L  
Sbjct: 106 PIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKR 165

Query: 131 AALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYA 190
              +HG  I      +++    ++++YA  C  +D+A  +F+ M  ++ VSW T+I G++
Sbjct: 166 GKEIHGQLITNSFAANVFAMTGVVNMYAK-CRQIDDAYKMFDRMPERDLVSWNTIIAGFS 224

Query: 191 HSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLP 250
            +G     L +   M  EG   +  +    + A A  G +  GK IH   I+ GF   + 
Sbjct: 225 QNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVN 284

Query: 251 VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSER 309
           +  ++ DMY +   +  A   FD M +K +++WN+++ GY ++G  E  + +F KM  E 
Sbjct: 285 ISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEG 344

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
             P   T    + ACA L  L  G+ VH  + +  L  ++++ N+LI MY+KC  +  + 
Sbjct: 345 IDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIAS 404

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
            IF+ ++ R  V+W +M++GY  +G   EA+  F EM   G++PD    ++V+ A +   
Sbjct: 405 DIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELS 464

Query: 430 LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESV--WGP 487
           +          +    ++ N  +   +VD+  + G +  A +L   +    D  V  W  
Sbjct: 465 VTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMI---SDRHVITWNA 521

Query: 488 LLGACKEHRLPNLGKLAALRVLD------LKPNMMGTYIILSNIYAAEGKWEEFAKFRKI 541
           ++     H    LG+ AAL + D      ++PN + TY+ + +  +  G  +E  +  K 
Sbjct: 522 MIDGYGTH---GLGR-AALDLFDKMKKGAVEPNDI-TYLSVISACSHSGLVDEGLRHFKS 576

Query: 542 MR 543
           M+
Sbjct: 577 MK 578



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 168/345 (48%), Gaps = 5/345 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           ++T L   Y   G +E AR +FD M ++ VVSW  M+ GY       +A  VF +M+   
Sbjct: 285 ISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEG 344

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           ++P   T+   L AC  +  L     VH    +  L   I V NSL+ +Y+ C   +D A
Sbjct: 345 IDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCK-RVDIA 403

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             +FN++  +  VSW  +I GYA +G     L  F EM   G++ + ++    + A A  
Sbjct: 404 SDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAEL 463

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
                 K IH  +I+     N+ V  +++DMY +   +  A + FD ++++ +ITWN +I
Sbjct: 464 SVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMI 523

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR--G 344
            GY   G     L++F KMK     PN  T+ S+I+AC+    +  G + H   +++  G
Sbjct: 524 DGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLR-HFKSMKQDYG 582

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIG 389
           L+ ++    A++D+  + G I ++      M     +T    M+G
Sbjct: 583 LEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLG 627


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 215/561 (38%), Positives = 335/561 (59%), Gaps = 3/561 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + + L+  Y   G I E R +F EMP R+VVSWT +I G      + +A   F EM R+ 
Sbjct: 153 VGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSR 212

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V  +++T +  LKAC    +L+    +H  A+K+G + S +V N+L  +Y  C   ++  
Sbjct: 213 VEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCG-KLEYG 271

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             +F  M  ++ VSWTT+IT     G     +  F  M    V  N Y+F+  +  CA+ 
Sbjct: 272 LTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANL 331

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             + +G+ +HA ++  G  ++L V NSI+ MY +   L+ ++  F EMT +D+++W+TII
Sbjct: 332 ARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTII 391

Query: 288 AGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           AGY + G  SE   + S M+ E   P  F   S+++AC  +A L  G+Q+HA ++  GL+
Sbjct: 392 AGYXQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLE 451

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
               + +ALI+MY KCG+I ++ +IF    + D+V+WT+M+ GY  HG+ +E I+LF+++
Sbjct: 452 HTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKI 511

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGR 465
            + G+RPD + F+ VL+ACSHAGLVD G  YF +M+  Y ++P+KE YGC++DLL RAGR
Sbjct: 512 PRVGLRPDSVTFIGVLSACSHAGLVDLGFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGR 571

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           + +A  +I++MPF  D+ VW  LL AC+ H     G+  A R+L L+PN  GT+I L+NI
Sbjct: 572 LSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANI 631

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           YA++GKW E A  RK+M+  G  KE G SWI+V+D V  F+A D+     + +Y +L++L
Sbjct: 632 YASKGKWREAADIRKLMKSKGVIKEPGWSWIKVKDLVFAFVAGDRSHPQGEDIYNMLDLL 691

Query: 586 IRHMNETAYEPDIDCLIHDLE 606
                      +   L +DLE
Sbjct: 692 ASRTELADCVQETGFLPYDLE 712



 Score =  271 bits (693), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 146/445 (32%), Positives = 249/445 (55%), Gaps = 4/445 (0%)

Query: 53  IKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM-VRNEVNPN 111
           +K     G +  AR +FD+M ++D +SWT +I+GY + N  ++A  +F  M V + +  +
Sbjct: 56  LKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRID 115

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
            F LS   KAC     ++   L+HG A+K GL  S++V ++L+D+Y T    +   R VF
Sbjct: 116 PFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMY-TKNGKIFEGRRVF 174

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           ++M  +N VSWT +ITG   +G     L  F EM    VE + Y+F+IA++ACA +G ++
Sbjct: 175 HEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALN 234

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
           +G+ IHA  +K GF  +  V N++  MY +   L      F++M+ +D+++W TII    
Sbjct: 235 YGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLV 294

Query: 292 KSGSSEC-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           + G  EC +  F +M+    SPN +TF ++I+ CA LA +  G+Q+HA I+  GL  +L+
Sbjct: 295 QMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLS 354

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           + N+++ MYAKCG ++ S  IF EM+ RD+V+W++++ GY   GH  EA EL   M   G
Sbjct: 355 VENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEG 414

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470
            +P      +VL+AC +  +++ G +    +    +     +   ++++  + G ++EA 
Sbjct: 415 PKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEAS 474

Query: 471 ELIKSMPFKPDESVWGPLLGACKEH 495
            +  +     D   W  ++    EH
Sbjct: 475 RIFDAAE-NDDIVSWTAMINGYAEH 498



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 213/414 (51%), Gaps = 41/414 (9%)

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAVR 222
           + NAR +F+ M  K+++SWTTLI+GY ++ +    L +FK M +E G+ ++P+  S+A +
Sbjct: 65  LGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAHK 124

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           AC     V++G+L+H   +K G  +++ V +++LDMY +   + +  + F EM  +++++
Sbjct: 125 ACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVS 184

Query: 283 WNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           W  II G  ++G + E L  FS+M   R   + +TF   + ACA   AL+ G+++HA  +
Sbjct: 185 WTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAM 244

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           ++G D +  +AN L  MY KCG +     +F +MS RD+V+WT+++      G  + A++
Sbjct: 245 KKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQ 304

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACS-----------HAGLVDEGLKYFKSMND------- 443
            F  M +S V P+   F AV++ C+           HA ++  GL    S+ +       
Sbjct: 305 AFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYA 364

Query: 444 -----------YNVNPNKEI--YGCVVDLLGRAGRVKEAYELIKSMPF---KPDESVWGP 487
                      ++    ++I  +  ++    + G V EA+EL+  M     KP E     
Sbjct: 365 KCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEFALAS 424

Query: 488 LLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS---NIYAAEGKWEEFAKF 538
           +L AC    +   GK     VL +   +  T ++LS   N+Y   G  EE ++ 
Sbjct: 425 VLSACGNMAILEHGKQLHAYVLSI--GLEHTAMVLSALINMYCKCGSIEEASRI 476



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 183/363 (50%), Gaps = 26/363 (7%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S +A  L   Y   G +E   TLF++M  RDVVSWT +I           A   F+ M  
Sbjct: 252 SFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRE 311

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           ++V+PN +T ++V+  C  +  +     +H + +  GL  S+ VENS+M +YA C   + 
Sbjct: 312 SDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCG-QLT 370

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           ++ ++F++M  ++ VSW+T+I GY   G+      +   M +EG +   ++ +  + AC 
Sbjct: 371 SSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACG 430

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           +   +  GK +HA V+  G      V++++++MYC+   + +A++ FD     D+++W  
Sbjct: 431 NMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTA 490

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I GY + G S E +++F K+      P+  TF  +++AC+           HAG+V  G
Sbjct: 491 MINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACS-----------HAGLVDLG 539

Query: 345 LDGNLALAN------------ALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYG 391
                A++              +ID+  + G +SD++ +   M   RD V W++++    
Sbjct: 540 FHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACR 599

Query: 392 AHG 394
            HG
Sbjct: 600 VHG 602



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 137/274 (50%), Gaps = 9/274 (3%)

Query: 247 SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKM 305
           ++LP  N  L    +   L +A + FD+M++KD I+W T+I+GY   + SSE L +F  M
Sbjct: 47  TDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNM 106

Query: 306 KSE---RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362
           + E   R  P  F  +    AC   + ++ G+ +H   V+ GL  ++ + +AL+DMY K 
Sbjct: 107 RVESGLRIDP--FILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKN 164

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
           G I + +++F EM  R++V+WT+++ G    G+ KEA+  F EM +S V  D   F   L
Sbjct: 165 GKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIAL 224

Query: 423 TACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDE 482
            AC+ +G ++ G +          + +  +   +  +  + G+++    L + M  + D 
Sbjct: 225 KACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMR-DV 283

Query: 483 SVWGPLLGACKEHRLPNLGKLAALRVL--DLKPN 514
             W  ++    +         A +R+   D+ PN
Sbjct: 284 VSWTTIITTLVQMGQEECAVQAFIRMRESDVSPN 317


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/560 (38%), Positives = 325/560 (58%), Gaps = 2/560 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + T L+  Y   G +E+A  +F+ +  R+VVSWT MIAG+       +A+  F +M+ + 
Sbjct: 343 VGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESG 402

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + PN  T  S+L AC    +L     +H   IK G      V  +L+ +YA C   MD A
Sbjct: 403 IEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMD-A 461

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R VF  +  +N V+W  +IT Y         +  F+ +L EG++ +  +F+  +  C S 
Sbjct: 462 RNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSP 521

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  GK + + +I+ GF S+L + N+++ M+     L  A   F++M E+DL++WNTII
Sbjct: 522 DALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTII 581

Query: 288 AGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           AG+ + G ++   + F  M+     P+  TFT ++ ACA+  AL+ G+++HA I    LD
Sbjct: 582 AGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALD 641

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            ++ +   LI MY KCG+I D+  +F  +  +++ +WTSM+ GY  HG GKEA+ELF +M
Sbjct: 642 CDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQM 701

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
            + GV+PD I F+  L+AC+HAGL+ EGL +F+SM D+N+ P  E YGC+VDL GRAG +
Sbjct: 702 QQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMKDFNIEPRMEHYGCMVDLFGRAGLL 761

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            EA E I  M  KPD  +WG LLGAC+ H    L +  A + L+L PN  G Y+ILSNIY
Sbjct: 762 HEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDPNDDGVYVILSNIY 821

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           AA G W+E  K RK+M   G  K+ G SWIEV  +V  F ++DK     + ++  L  L 
Sbjct: 822 AAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGRVHIFCSDDKTHPQIEEIHAELGRLH 881

Query: 587 RHMNETAYEPDIDCLIHDLE 606
             M +  Y PD   ++HD+E
Sbjct: 882 MEMKKLGYVPDTRYVLHDVE 901



 Score =  251 bits (641), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 159/534 (29%), Positives = 264/534 (49%), Gaps = 39/534 (7%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + T LI  +   G +++A  +F+ +P RD+++WT MI G        QA  +F  M   
Sbjct: 241 FVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEE 300

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V P+     S+LKAC   ++L     VH    + GL+  IYV  +L+ +Y T C SM++
Sbjct: 301 GVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMY-TKCGSMED 359

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  VFN +K +N VSWT +I G+A  G        F +M+  G+E N  +F   + AC+ 
Sbjct: 360 ALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSR 419

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  G+ IH  +IK G+ ++  V  ++L MY +   L DA   F+ +++++++ WN +
Sbjct: 420 PSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAM 479

Query: 287 IAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I  Y +       +  F  +  E   P+  TFTSI+  C +  AL  G+ V + I+R G 
Sbjct: 480 ITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGF 539

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           + +L + NAL+ M+  CG++  +  +F++M +RDLV+W +++ G+  HG  + A + F  
Sbjct: 540 ESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKM 599

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLK-----------------------YFK--S 440
           M +SGV+PD+I F  +L AC+    + EG +                       Y K  S
Sbjct: 600 MQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGS 659

Query: 441 MND----YNVNPNKEIYGCVVDLLGRA--GRVKEAYELIKSMP---FKPDESVWGPLLGA 491
           ++D    ++  P K +Y     + G A  GR KEA EL   M     KPD   +   L A
Sbjct: 660 IDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSA 719

Query: 492 CKEHRL--PNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMR 543
           C    L    L    +++  +++P  M  Y  + +++   G   E  +F   M+
Sbjct: 720 CAHAGLIKEGLHHFESMKDFNIEPR-MEHYGCMVDLFGRAGLLHEAVEFINKMQ 772



 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 126/454 (27%), Positives = 236/454 (51%), Gaps = 6/454 (1%)

Query: 45  PSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           P I   N LI  Y   G    A+ +FDEMP++DV SW +++ GY     + +A+ +  +M
Sbjct: 137 PDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQM 196

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           V++ V P+ +T   +L AC   K++     +  + +  G +  ++V  +L++++  C   
Sbjct: 197 VQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCG-G 255

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +D+A  VFN++  ++ ++WT++ITG A          +F+ M  EGV+ +  +F   ++A
Sbjct: 256 VDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKA 315

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C     +  GK +HA + + G  + + V  ++L MY +   + DA + F+ +  +++++W
Sbjct: 316 CNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSW 375

Query: 284 NTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
             +IAG+ + G   E    F+KM      PN  TF SI+ AC+  +AL  G+Q+H  I++
Sbjct: 376 TAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIK 435

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            G   +  +  AL+ MYAKCG++ D++ +F  +S +++V W +M+  Y  H     A+  
Sbjct: 436 AGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVAT 495

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLG 461
           F  ++K G++PD   F ++L  C     ++ G K+ +S+        +  I   +V +  
Sbjct: 496 FQALLKEGIKPDSSTFTSILNVCKSPDALELG-KWVQSLIIRAGFESDLHIRNALVSMFV 554

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
             G +  A  L   MP + D   W  ++    +H
Sbjct: 555 NCGDLMSAMNLFNDMP-ERDLVSWNTIIAGFVQH 587



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 114/447 (25%), Positives = 232/447 (51%), Gaps = 11/447 (2%)

Query: 94  NQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSL 153
           ++A  V + +    +  +  T SS+L+ C   K+L +   +H       ++  I++ N L
Sbjct: 86  SEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNML 145

Query: 154 MDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMN 213
           + +YA C  + ++A+ +F++M  K+  SW  L+ GY           + ++M+ +GV+ +
Sbjct: 146 ISMYAKCG-NTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPD 204

Query: 214 PYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFD 273
            Y+F   + ACA    V  G  + + ++  G+ ++L V  ++++M+ +   + DA + F+
Sbjct: 205 KYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFN 264

Query: 274 EMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSC 332
            +  +DLITW ++I G  +     +  N+F  M+ E   P+   F S++ AC    AL  
Sbjct: 265 NLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQ 324

Query: 333 GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA 392
           G++VHA +   GLD  + +  AL+ MY KCG++ D+ ++F+ +  R++V+WT+M+ G+  
Sbjct: 325 GKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQ 384

Query: 393 HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEI 452
           HG  +EA   F++M++SG+ P+R+ FM++L ACS    + +G +    +       +  +
Sbjct: 385 HGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRV 444

Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLD 510
              ++ +  + G + +A  + + +  K +   W  ++ A  +H   +  +    AL    
Sbjct: 445 RTALLSMYAKCGSLMDARNVFERIS-KQNVVAWNAMITAYVQHEKYDNAVATFQALLKEG 503

Query: 511 LKPNMMGTYIILSNIYAAE-----GKW 532
           +KP+   T+  + N+  +      GKW
Sbjct: 504 IKPD-SSTFTSILNVCKSPDALELGKW 529


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/562 (38%), Positives = 341/562 (60%), Gaps = 4/562 (0%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T ++  Y     I++A  +FD MPERD+VSW  +IAG++      +A  + + M      
Sbjct: 186 TGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQR 245

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P++ TL +VL A   +  L     +HG AI+ G    + +  +L D+Y+ C  S++ ARL
Sbjct: 246 PDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCG-SVETARL 304

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           +F+ M  K  VSW +++ GY  +G     + VF++ML EG++    +   A+ ACA  G 
Sbjct: 305 IFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGD 364

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           +  GK +H  V +   GS++ VMNS++ MY +   +  A+  F+ +  +  ++WN +I G
Sbjct: 365 LERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILG 424

Query: 290 YEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           Y ++G  SE LN FS+MKS    P+ FT  S+I A A L+     + +H  I+R  LD N
Sbjct: 425 YAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKN 484

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           + +  AL+DMY+KCG I  ++K+F  +SDR ++TW +M+ GYG HG G+ A++LFD+M K
Sbjct: 485 IFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKK 544

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVK 467
             V P+ I +++V++ACSH+GLVDEGL++FKSM  DY + P+ + YG +VDLLGRAGR+K
Sbjct: 545 GAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIK 604

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527
           EA++ I++MP  P  +V+G   GACK H+   +G+ AA ++ +L P+  G +++L+NIYA
Sbjct: 605 EAWDFIENMPISPGITVYGAXXGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYA 664

Query: 528 AEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIR 587
           +  KW + A+ RK M   G KK  G S +E+R++V  F +       ++ +Y  LE L+ 
Sbjct: 665 STSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVY 724

Query: 588 HMNETAYEPDIDCLIHDLEGET 609
            +    Y PD + LI D+E + 
Sbjct: 725 EIKAAGYVPDTN-LILDVEDDV 745



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 137/542 (25%), Positives = 250/542 (46%), Gaps = 21/542 (3%)

Query: 14  HCHKIPPIIKQSLQSVKKSSIQSDPPLIPKG---PSILATNLIKSYFDEGLIEEARTLFD 70
           H +K P  +   L +  K   Q  P +I  G     +  T L+  +   G I EA  +F+
Sbjct: 46  HVYKHPAAVLLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFE 105

Query: 71  EMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSN 130
            + ++    +  M+ GY   +    A      M  ++V P  +  + +LK C     L  
Sbjct: 106 PIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKR 165

Query: 131 AALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYA 190
              +HG  I      +++    ++++YA  C  +D+A  +F+ M  ++ VSW T+I G++
Sbjct: 166 GKEIHGQLITNSFAANVFAMTGVVNMYAK-CRQIDDAYKMFDRMPERDLVSWNTIIAGFS 224

Query: 191 HSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLP 250
            +G     L +   M  EG   +  +    + A A  G +  GK IH   I+ GF   + 
Sbjct: 225 QNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVN 284

Query: 251 VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSER 309
           +  ++ DMY +   +  A   FD M +K +++WN+++ GY ++G  E  + +F KM  E 
Sbjct: 285 ISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEG 344

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
             P   T    + ACA L  L  G+ VH  + +  L  ++++ N+LI MY+KC  +  + 
Sbjct: 345 IDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIAS 404

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
            IF+ ++ R  V+W +M++GY  +G   EA+  F EM   G++PD    ++V+ A +   
Sbjct: 405 DIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELS 464

Query: 430 LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESV--WGP 487
           +          +    ++ N  +   +VD+  + G +  A +L   +    D  V  W  
Sbjct: 465 VTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMI---SDRHVITWNA 521

Query: 488 LLGACKEHRLPNLGKLAALRVLD------LKPNMMGTYIILSNIYAAEGKWEEFAKFRKI 541
           ++     H    LG+ AAL + D      ++PN + TY+ + +  +  G  +E  +  K 
Sbjct: 522 MIDGYGTH---GLGR-AALDLFDKMKKGAVEPNDI-TYLSVISACSHSGLVDEGLRHFKS 576

Query: 542 MR 543
           M+
Sbjct: 577 MK 578



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 97/331 (29%), Positives = 163/331 (49%), Gaps = 5/331 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           ++T L   Y   G +E AR +FD M ++ VVSW  M+ GY       +A  VF +M+   
Sbjct: 285 ISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEG 344

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           ++P   T+   L AC  +  L     VH    +  L   I V NSL+ +Y+ C   +D A
Sbjct: 345 IDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCK-RVDIA 403

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             +FN++  +  VSW  +I GYA +G     L  F EM   G++ + ++    + A A  
Sbjct: 404 SDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAEL 463

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
                 K IH  +I+     N+ V  +++DMY +   +  A + FD ++++ +ITWN +I
Sbjct: 464 SVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMI 523

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR--G 344
            GY   G     L++F KMK     PN  T+ S+I+AC+    +  G + H   +++  G
Sbjct: 524 DGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLR-HFKSMKQDYG 582

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEM 375
           L+ ++    A++D+  + G I ++      M
Sbjct: 583 LEPSMDHYGAMVDLLGRAGRIKEAWDFIENM 613


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/560 (37%), Positives = 341/560 (60%), Gaps = 3/560 (0%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108
           A  L+  Y   G IE A  +F ++   DVVSW  +IAG    +C++ A  +  EM  +  
Sbjct: 221 ANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGT 280

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
            PN FTLSS LKAC  M        +H   IK      ++    L+D+Y+ C + MD+AR
Sbjct: 281 RPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEM-MDDAR 339

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
             ++ M  K+ ++W  LI+GY+  G+    + +F +M  E ++ N  + S  +++ AS  
Sbjct: 340 RAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQ 399

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            +   K IH   IK G  S+  V+NS+LD Y + + + +A++ F+E T +DL+ + ++I 
Sbjct: 400 AIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMIT 459

Query: 289 GYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
            Y + G   E L ++ +M+     P+ F  +S++ ACA L+A   G+Q+H   ++ G   
Sbjct: 460 AYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMC 519

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           ++  +N+L++MYAKCG+I D+ + FSE+ +R +V+W++M+ GY  HGHGKEA+ LF++M+
Sbjct: 520 DIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQML 579

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRV 466
           + GV P+ I  ++VL AC+HAGLV+EG +YF+ M   + + P +E Y C++DLLGR+G++
Sbjct: 580 RDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKL 639

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            EA EL+ S+PF+ D  VWG LLGA + H+   LG+ AA  + DL+P   GT+++L+NIY
Sbjct: 640 NEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEPEKSGTHVLLANIY 699

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           A+ G WE  AK RK M+    KKE GMSWIE++DKV  FI  D+  S +  +Y  L+ L 
Sbjct: 700 ASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYTFIVGDRSHSRSDEIYAKLDQLG 759

Query: 587 RHMNETAYEPDIDCLIHDLE 606
             +++  Y   ++  IH+++
Sbjct: 760 DLLSKAGYSSIVEIDIHNVD 779



 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 132/450 (29%), Positives = 247/450 (54%), Gaps = 3/450 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            +A  L+  Y   GL++++R LF  + ER+VVSW  + + Y       +A  +F EMVR+
Sbjct: 118 FVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRS 177

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + PN F++S +L AC G++       +HG+ +K GL+   +  N+L+D+Y+     ++ 
Sbjct: 178 GIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAG-EIEG 236

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  VF D+   + VSW  +I G          L +  EM   G   N ++ S A++ACA+
Sbjct: 237 AVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAA 296

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G+   G+ +H+++IK    S+L     ++DMY + + + DA + +D M +KD+I WN +
Sbjct: 297 MGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNAL 356

Query: 287 IAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+GY + G   + +++FSKM SE    N  T ++++ + A+L A+   +Q+H   ++ G+
Sbjct: 357 ISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGI 416

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             +  + N+L+D Y KC +I ++ KIF E +  DLV +TSM+  Y  +G G+EA++L+ +
Sbjct: 417 YSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQ 476

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M  + ++PD  +  ++L AC++    ++G +       +    +      +V++  + G 
Sbjct: 477 MQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGS 536

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           +++A      +P +   S W  ++G   +H
Sbjct: 537 IEDADRAFSEIPNRGIVS-WSAMIGGYAQH 565



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 151/512 (29%), Positives = 238/512 (46%), Gaps = 49/512 (9%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           AR L DE  E DVVSW+ +++GY       +A  VF EM    V  N FT  SVLKAC  
Sbjct: 35  ARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSM 94

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTT 184
            + L+    VHGMA+  G E   +V N+L+ +YA C + +D++R +F  +  +N VSW  
Sbjct: 95  KRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGL-LDDSRRLFGGIVERNVVSWNA 153

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG 244
           L + Y  S      +G+FKEM+  G+  N +S SI + ACA       G+ IH  ++K G
Sbjct: 154 LFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMG 213

Query: 245 FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFS 303
              +    N+++DMY +   +  A   F ++   D+++WN IIAG      ++  L +  
Sbjct: 214 LDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLD 273

Query: 304 KMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG 363
           +MK     PN FT +S + ACA +     G+Q+H+ +++     +L  A  L+DMY+KC 
Sbjct: 274 EMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCE 333

Query: 364 NISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM----------------- 406
            + D+++ +  M  +D++ W +++ GY   G   +A+ LF +M                 
Sbjct: 334 MMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLK 393

Query: 407 ------------------VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP 448
                             +KSG+  D  V  ++L        +DE  K F+     ++  
Sbjct: 394 SVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVA 453

Query: 449 NKEIYGCVVDLLGRAGRVKEAYELIKSMP---FKPDESVWGPLLGACKEHRLPNLGKLAA 505
               Y  ++    + G  +EA +L   M     KPD  +   LL AC        GK   
Sbjct: 454 ----YTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGK--Q 507

Query: 506 LRVLDLKPNMMGTYII---LSNIYAAEGKWEE 534
           L V  +K   M        L N+YA  G  E+
Sbjct: 508 LHVHAIKFGFMCDIFASNSLVNMYAKCGSIED 539



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/368 (28%), Positives = 191/368 (51%), Gaps = 10/368 (2%)

Query: 134 VHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSG 193
           +H   IK G      + N L+ +Y+ C      AR + ++    + VSW++L++GY  +G
Sbjct: 3   LHAHLIKFGFSRDPSLRNHLVTLYSKC-RRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 194 NGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMN 253
                L VF EM L GV+ N ++F   ++AC+    ++ G+ +H   +  GF S+  V N
Sbjct: 62  FVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVAN 121

Query: 254 SILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSP 312
           +++ MY +   L D+ + F  + E+++++WN + + Y +S    E + +F +M      P
Sbjct: 122 TLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMP 181

Query: 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIF 372
           N F+ + I+ ACA L     G+++H  +++ GLD +   ANAL+DMY+K G I  +  +F
Sbjct: 182 NEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVF 241

Query: 373 SEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD 432
            +++  D+V+W +++ G   H     A+ L DEM  SG RP+     + L AC+  G  +
Sbjct: 242 QDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKE 301

Query: 433 EGLKYFKSMNDYNVNPNKEIYGCV--VDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490
            G +   S+    ++ + +++  V  VD+  +   + +A     SMP K D   W  L+ 
Sbjct: 302 LGRQLHSSL--IKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMP-KKDIIAWNALIS 358

Query: 491 A---CKEH 495
               C +H
Sbjct: 359 GYSQCGDH 366



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 152/288 (52%), Gaps = 12/288 (4%)

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG- 294
           +HA +IK GF  +  + N ++ +Y +      A +  DE +E D+++W+++++GY ++G 
Sbjct: 3   LHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGF 62

Query: 295 SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
             E L +F++M       N FTF S++ AC+    L+ G++VH   V  G + +  +AN 
Sbjct: 63  VEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANT 122

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
           L+ MYAKCG + DS+++F  + +R++V+W ++   Y       EA+ LF EMV+SG+ P+
Sbjct: 123 LVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPN 182

Query: 415 RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
                 +L AC+     D G K    M    ++ ++     +VD+  +AG ++ A  + +
Sbjct: 183 EFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQ 242

Query: 475 SMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD------LKPNMM 516
            +   PD   W  ++  C  H   +L    AL +LD       +PNM 
Sbjct: 243 DIA-HPDVVSWNAIIAGCVLHDCNDL----ALMLLDEMKGSGTRPNMF 285



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 96/205 (46%), Gaps = 40/205 (19%)

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
           ++HA +++ G   + +L N L+ +Y+KC     ++K+  E S+ D+V+W+S++ GY  +G
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACS---------------------------- 426
             +EA+ +F+EM   GV+ +   F +VL ACS                            
Sbjct: 62  FVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVAN 121

Query: 427 -------HAGLVDEGLKYFKSMNDYNVNPNKEIYGCVV--DLLGRAGRVKEAYELIKSMP 477
                    GL+D+  + F  + + NV     ++ C V  +L G A  V    E+++S  
Sbjct: 122 TLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEA--VGLFKEMVRS-G 178

Query: 478 FKPDESVWGPLLGACKEHRLPNLGK 502
             P+E     +L AC   +  +LG+
Sbjct: 179 IMPNEFSISIILNACAGLQEGDLGR 203


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/556 (38%), Positives = 339/556 (60%), Gaps = 7/556 (1%)

Query: 59  EGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSV 118
            G +  A  +F++MPER+ V+WT+MI     F    +A  +F+EM+ +   P+ FTLS V
Sbjct: 218 RGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGV 277

Query: 119 LKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI--SMDNARLVFNDMKW 176
           + AC  M+ L     +H  AI+ GL     V   L+++YA C +  SM  AR +F+ +  
Sbjct: 278 ISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILD 337

Query: 177 KNDVSWTTLITGYAHSGNGYG--GLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGK 234
            N  SWT +ITGY   G GY    L +F+ M+L  V  N ++FS  ++ACA+   +  G+
Sbjct: 338 HNVFSWTAMITGYVQKG-GYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGE 396

Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS- 293
            +    +K GF S   V NS++ MY R   + DA + FD + EK+LI++NT+I  Y K+ 
Sbjct: 397 QVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNL 456

Query: 294 GSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353
            S E L +F++++ +    + FTF S+++  A++  +  G+Q+HA +++ GL  N ++ N
Sbjct: 457 NSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCN 516

Query: 354 ALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP 413
           ALI MY++CGNI  + ++F +M DR++++WTS++ G+  HG   +A+ELF +M++ GVRP
Sbjct: 517 ALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRP 576

Query: 414 DRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
           + + ++AVL+ACSH GLV+EG K+FKSM  ++ V P  E Y C+VD+LGR+G + EA + 
Sbjct: 577 NLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQF 636

Query: 473 IKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKW 532
           I SMP+K D  VW   LGAC+ H    LGK AA  +++ +P+    YI+LSN+YA+  KW
Sbjct: 637 INSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASTSKW 696

Query: 533 EEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNET 592
           +E +  RK M+     KE G SW+EV +KV  F   D        +Y  L+ L   + + 
Sbjct: 697 DEVSNIRKAMKEKNLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKL 756

Query: 593 AYEPDIDCLIHDLEGE 608
            Y P++D ++HD+E E
Sbjct: 757 GYVPNLDFVLHDVEEE 772



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 141/522 (27%), Positives = 265/522 (50%), Gaps = 23/522 (4%)

Query: 29  VKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEM-PERDVVSWTVMIAGY 87
           V +   QSD  L     S+   +LI  Y   G  E+A ++F  M   RD++SW+ M++ +
Sbjct: 88  VHEKLTQSDLQL----DSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCF 143

Query: 88  TSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG-LEGS 146
            + N   +A   FV+M+ N   PN +  ++  +AC   + +S    + G  +K G L+  
Sbjct: 144 ANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSD 203

Query: 147 IYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEML 206
           + V   L+D++      + +A  VF  M  +N V+WT +IT     G     + +F EM+
Sbjct: 204 VCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMI 263

Query: 207 LEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMY--CRFD- 263
           L G E + ++ S  + ACA+   +  G+ +H+  I+HG   +  V   +++MY  C  D 
Sbjct: 264 LSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDG 323

Query: 264 CLSDANQYFDEMTEKDLITWNTIIAGYEKSG--SSECLNMFSKMKSERFSPNCFTFTSII 321
            +  A + FD++ + ++ +W  +I GY + G    E L++F  M      PN FTF+S +
Sbjct: 324 SMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTL 383

Query: 322 AACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLV 381
            ACA LAAL  G+QV    V+ G      +AN+LI MYA+ G I D++K F  + +++L+
Sbjct: 384 KACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLI 443

Query: 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441
           ++ +++  Y  + + +EA+ELF+E+   G+      F ++L+  +  G + +G +    +
Sbjct: 444 SYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARV 503

Query: 442 NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESV--WGPLLGACKEHRLPN 499
               +  N+ +   ++ +  R G ++ A+++ + M    D +V  W  ++    +H    
Sbjct: 504 IKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDM---EDRNVISWTSIITGFAKHGFAT 560

Query: 500 LGKLAALRVLD--LKPNMMGTYIIL----SNIYAAEGKWEEF 535
                  ++L+  ++PN++ TYI +    S++      W+ F
Sbjct: 561 QALELFHKMLEEGVRPNLV-TYIAVLSACSHVGLVNEGWKHF 601



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 113/385 (29%), Positives = 205/385 (53%), Gaps = 11/385 (2%)

Query: 94  NQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSL 153
           ++A +    MV    +P+  T S  LK C   +S     LVH    +  L+      NSL
Sbjct: 48  HKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSL 107

Query: 154 MDVYATCCISMDNARLVFNDMKWKND-VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEM 212
           + +Y+ C    + A  +F  M    D +SW+ +++ +A++  G+  L  F +M+  G   
Sbjct: 108 ISLYSKCG-QWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYP 166

Query: 213 NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGF-GSNLPVMNSILDMYC--RFDCLSDAN 269
           N Y F+ A RAC++  +VS G  I   V+K G+  S++ V   ++DM+   R D +S A 
Sbjct: 167 NEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVS-AF 225

Query: 270 QYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLA 328
           + F++M E++ +TW  +I    + G + E +++F +M    + P+ FT + +I+ACA + 
Sbjct: 226 KVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANME 285

Query: 329 ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC---GNISDSQKIFSEMSDRDLVTWTS 385
            L  GQQ+H+  +R GL  +  +   LI+MYAKC   G++  ++KIF ++ D ++ +WT+
Sbjct: 286 LLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTA 345

Query: 386 MMIGYGAH-GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDY 444
           M+ GY    G+ +EA++LF  M+ + V P+   F + L AC++   +  G + F      
Sbjct: 346 MITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKL 405

Query: 445 NVNPNKEIYGCVVDLLGRAGRVKEA 469
             +    +   ++ +  R+GR+ +A
Sbjct: 406 GFSSVNCVANSLISMYARSGRIDDA 430



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 137/264 (51%), Gaps = 3/264 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A +LI  Y   G I++AR  FD + E++++S+  +I  Y       +A  +F E+    
Sbjct: 413 VANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQG 472

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           +  +AFT +S+L     + ++     +H   IK GL+ +  V N+L+ +Y+ C  ++++A
Sbjct: 473 MGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCG-NIESA 531

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             VF DM+ +N +SWT++ITG+A  G     L +F +ML EGV  N  ++   + AC+  
Sbjct: 532 FQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHV 591

Query: 228 GWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLITWNT 285
           G V+ G K   +   +HG    +     ++D+  R   LS+A Q+ + M  K D + W T
Sbjct: 592 GLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRT 651

Query: 286 IIAGYEKSGSSECLNMFSKMKSER 309
            +      G+ E     +KM  E+
Sbjct: 652 FLGACRVHGNLELGKHAAKMIIEQ 675



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 137/276 (49%), Gaps = 4/276 (1%)

Query: 191 HSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLP 250
           ++G  +  +   + M+ +G   +  ++S+ ++ C  T     G L+H  + +     +  
Sbjct: 43  NNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSV 102

Query: 251 VMNSILDMYCRFDCLSDANQYFDEM-TEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSE 308
            +NS++ +Y +      A   F  M + +DLI+W+ +++ +  +      L  F  M   
Sbjct: 103 TLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIEN 162

Query: 309 RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG-LDGNLALANALIDMYAKC-GNIS 366
            + PN + F +   AC+T   +S G  +   +V+ G L  ++ +   LIDM+ K  G++ 
Sbjct: 163 GYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLV 222

Query: 367 DSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS 426
            + K+F +M +R+ VTWT M+      G+  EAI+LF EM+ SG  PDR     V++AC+
Sbjct: 223 SAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACA 282

Query: 427 HAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           +  L+  G +       + +  ++ +  C++++  +
Sbjct: 283 NMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAK 318



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 3/169 (1%)

Query: 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKI 371
           P+  T++  +  C    +   G  VH  + +  L  +    N+LI +Y+KCG    +  I
Sbjct: 64  PDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSI 123

Query: 372 FSEM-SDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           F  M S RDL++W++M+  +  +  G  A+  F +M+++G  P+   F A   ACS A  
Sbjct: 124 FQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEF 183

Query: 431 VDEGLKYFKSMNDYNVNPNKEIYGC-VVDLLGRA-GRVKEAYELIKSMP 477
           V  G   F  +       +    GC ++D+  +  G +  A+++ + MP
Sbjct: 184 VSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMP 232


>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
 gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/554 (38%), Positives = 334/554 (60%), Gaps = 7/554 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + + L+  Y   G ++E   +F EMP R+VVSWT +IAG      + +A   F +M   
Sbjct: 104 FVGSALVDMYMKIGKVDEGCIVFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQ 163

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           +V  + +T SS LKAC    +L+    +H   +K+G     +V N+L  +Y  C   +D 
Sbjct: 164 KVGCDTYTFSSALKACADSGALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCG-KLDY 222

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
              +F  M  ++ VSWTT+I      G     +  F+ M    V  N ++F+  +  CA+
Sbjct: 223 GLRLFESMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCAT 282

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G + +G+ +HA VI+ G   +L V NSI+ MY +   L  A+  F  ++ +D+I+W+T+
Sbjct: 283 LGRIEWGEQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTM 342

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+GY + G   E  +  S M+ E   PN F F S+++ C  +A L  G+Q+HA ++  GL
Sbjct: 343 ISGYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGL 402

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           + N  + +ALI+MY+KCG+I ++ KIF E    ++V+WT+M+ GY  HG+ +EAI+LF +
Sbjct: 403 EQNTMVQSALINMYSKCGSIKEASKIFDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKK 462

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAG 464
           + K G+RPD + F+AVL ACSHAGLVD G  YF S++  + + P+K+ YGC++DLL RAG
Sbjct: 463 LPKVGLRPDSVTFIAVLAACSHAGLVDLGFHYFNSLSKVHQICPSKDHYGCMIDLLCRAG 522

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           R+ +A  +I+SMPF+ D+ VW  LL AC+ H   + GK AA ++L L PN   T+I L+N
Sbjct: 523 RLNDAESMIQSMPFQRDDVVWSTLLRACRIHGDVDCGKRAAEKILQLDPNCAVTHITLAN 582

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           +YAA+GKW+E A+ RK+M+  G  KE G SWI+ +D+V  F++ D+     +Y+Y VL++
Sbjct: 583 MYAAKGKWKEAAEVRKMMKSKGVVKEPGWSWIKFKDRVSAFVSGDRSHPEGEYIYDVLDL 642

Query: 585 LIR----HMNETAY 594
           L      HM E  +
Sbjct: 643 LASQAEMHMQEMDF 656



 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 142/452 (31%), Positives = 256/452 (56%), Gaps = 8/452 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM-V 104
           +++  NL+K+    G +  AR LFD+M +RD +SWT +I+GY +     +A ++F +M V
Sbjct: 5   NLVLKNLVKT----GHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWV 60

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
              ++ + F LS  LKAC    S+S    +HG ++K     S++V ++L+D+Y      +
Sbjct: 61  EPGLHMDPFILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIG-KV 119

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           D   +VF +M  +N VSWT +I G   +G     L  F +M ++ V  + Y+FS A++AC
Sbjct: 120 DEGCIVFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKAC 179

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           A +G +++G+ IH   +K GF +   V N++  MY +   L    + F+ MT++D+++W 
Sbjct: 180 ADSGALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWT 239

Query: 285 TIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           TII    + G  E  +  F +M+    SPN FTF ++I+ CATL  +  G+Q+HA ++RR
Sbjct: 240 TIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRR 299

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           GL  +L++AN+++ MY+KC  +  +  +F  +S RD+++W++M+ GY   G G+EA +  
Sbjct: 300 GLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYL 359

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
             M + G RP+   F +VL+ C +  ++++G +    +    +  N  +   ++++  + 
Sbjct: 360 SWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALINMYSKC 419

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           G +KEA ++     +    S W  ++    EH
Sbjct: 420 GSIKEASKIFDEAEYNNIVS-WTAMINGYAEH 450



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 106/373 (28%), Positives = 181/373 (48%), Gaps = 29/373 (7%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S +A  L   Y   G ++    LF+ M +RDVVSWT +I           A   F  M  
Sbjct: 204 SFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRE 263

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
            +V+PN FT ++V+  C  +  +     +H   I+ GL  S+ V NS+M +Y+ C   +D
Sbjct: 264 TDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVDSLSVANSIMAMYSKCW-QLD 322

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A  VF  +  ++ +SW+T+I+GYA  G G         M  EG   N ++F+  +  C 
Sbjct: 323 LASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCG 382

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           +   +  GK +HA V+  G   N  V +++++MY +   + +A++ FDE    ++++W  
Sbjct: 383 NMAILEQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSIKEASKIFDEAEYNNIVSWTA 442

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I GY + G S E +++F K+      P+  TF +++AAC+           HAG+V  G
Sbjct: 443 MINGYAEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAACS-----------HAGLVDLG 491

Query: 345 LDGNLALANA------------LIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYG 391
                +L+              +ID+  + G ++D++ +   M   RD V W++++    
Sbjct: 492 FHYFNSLSKVHQICPSKDHYGCMIDLLCRAGRLNDAESMIQSMPFQRDDVVWSTLLRACR 551

Query: 392 AHGH---GKEAIE 401
            HG    GK A E
Sbjct: 552 IHGDVDCGKRAAE 564



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 141/299 (47%), Gaps = 6/299 (2%)

Query: 252 MNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS-GSSECLNMFSKMKSER- 309
           +N +L    +   L++A Q FD+M ++D I+W TII+GY     ++E L++FSKM  E  
Sbjct: 4   INLVLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPG 63

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
              + F  +  + AC    ++S G+ +H   V+     ++ + +AL+DMY K G + +  
Sbjct: 64  LHMDPFILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGC 123

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
            +F EM  R++V+WT+++ G    G+ KEA+  F +M    V  D   F + L AC+ +G
Sbjct: 124 IVFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSG 183

Query: 430 LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
            ++ G +               +   +  +  + G++     L +SM  +   S    ++
Sbjct: 184 ALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIM 243

Query: 490 GACKEHRLPNLGK-LAALRVLDLKPNMMGTYIILSNIYAAEGK--WEEFAKFRKIMRGM 545
              +  +  N  K    +R  D+ PN      ++S   A  G+  W E      I RG+
Sbjct: 244 SNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGC-ATLGRIEWGEQLHAHVIRRGL 301


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/556 (38%), Positives = 339/556 (60%), Gaps = 7/556 (1%)

Query: 59  EGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSV 118
            G +  A  +F++MPER+ V+WT+MI     F    +A  +F++M+ +   P+ FTLS V
Sbjct: 218 RGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGV 277

Query: 119 LKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI--SMDNARLVFNDMKW 176
           + AC  M+ L     +H  AI+ GL     V   L+++YA C +  SM  AR +F+ +  
Sbjct: 278 ISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILD 337

Query: 177 KNDVSWTTLITGYAHSGNGYG--GLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGK 234
            N  SWT +ITGY   G GY    L +F+ M+L  V  N ++FS  ++ACA+   +  G+
Sbjct: 338 HNVFSWTAMITGYVQKG-GYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGE 396

Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS- 293
            +    +K GF S   V NS++ MY R   + DA + FD + EK+LI++NT+I  Y K+ 
Sbjct: 397 QVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNL 456

Query: 294 GSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353
            S E L +F++++ +    + FTF S+++  A++  +  G+Q+HA +++ GL  N ++ N
Sbjct: 457 NSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCN 516

Query: 354 ALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP 413
           ALI MY++CGNI  + ++F +M DR++++WTS++ G+  HG   +A+ELF +M++ GVRP
Sbjct: 517 ALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRP 576

Query: 414 DRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
           + + ++AVL+ACSH GLV+EG K+FKSM  ++ V P  E Y C+VD+LGR+G + EA + 
Sbjct: 577 NEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQF 636

Query: 473 IKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKW 532
           I SMP+K D  VW   LGAC+ H    LGK AA  +++ +P+    YI+LSN+YA+  KW
Sbjct: 637 INSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASISKW 696

Query: 533 EEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNET 592
           +E +  RK M+     KE G SW+EV +KV  F   D        +Y  L+ L   + + 
Sbjct: 697 DEVSNIRKAMKEKXLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKL 756

Query: 593 AYEPDIDCLIHDLEGE 608
            Y P++D ++HD+E E
Sbjct: 757 GYVPNLDFVLHDVEEE 772



 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 140/522 (26%), Positives = 263/522 (50%), Gaps = 23/522 (4%)

Query: 29  VKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEM-PERDVVSWTVMIAGY 87
           V +   QSD  L     S+   +LI  Y   G  E+A ++F  M   RD++SW+ M++ +
Sbjct: 88  VHEKLTQSDLQL----DSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCF 143

Query: 88  TSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG-LEGS 146
            + N   +A   FV+M+ N   PN +  ++  +AC   + +S    + G  IK G L+  
Sbjct: 144 ANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSD 203

Query: 147 IYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEML 206
           + V   L+D++      + +A  VF  M  +N V+WT +IT     G     + +F +M+
Sbjct: 204 VCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMI 263

Query: 207 LEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMY--CRFD- 263
             G E + ++ S  + ACA+   +  G+ +H+  I+HG   +  V   +++MY  C  D 
Sbjct: 264 FSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDG 323

Query: 264 CLSDANQYFDEMTEKDLITWNTIIAGYEKSG--SSECLNMFSKMKSERFSPNCFTFTSII 321
            +  A + FD++ + ++ +W  +I GY + G    E L++F  M      PN FTF+S +
Sbjct: 324 SMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTL 383

Query: 322 AACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLV 381
            ACA LAAL  G+QV    V+ G      +AN+LI MYA+ G I D++K F  + +++L+
Sbjct: 384 KACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLI 443

Query: 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441
           ++ +++  Y  + + +EA+ELF+E+   G+      F ++L+  +  G + +G +    +
Sbjct: 444 SYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARV 503

Query: 442 NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESV--WGPLLGACKEHRLPN 499
               +  N+ +   ++ +  R G ++ A+++ + M    D +V  W  ++    +H    
Sbjct: 504 IKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDM---EDRNVISWTSIITGFAKHGFAT 560

Query: 500 LGKLAALRVLD--LKPNMMGTYIIL----SNIYAAEGKWEEF 535
                  ++L+  ++PN + TYI +    S++      W+ F
Sbjct: 561 QALELFHKMLEEGVRPNEV-TYIAVLSACSHVGLVNEGWKHF 601



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 114/385 (29%), Positives = 204/385 (52%), Gaps = 11/385 (2%)

Query: 94  NQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSL 153
           ++A +    MV    +P+  T S  LK C   +S     LVH    +  L+      NSL
Sbjct: 48  HKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSL 107

Query: 154 MDVYATCCISMDNARLVFNDMKWKND-VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEM 212
           + +Y+ C    + A  +F  M    D +SW+ +++ +A++  G+  L  F +M+  G   
Sbjct: 108 ISLYSKCG-QWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYP 166

Query: 213 NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGF-GSNLPVMNSILDMYC--RFDCLSDAN 269
           N Y F+ A RAC++  +VS G  I   VIK G+  S++ V   ++DM+   R D +S A 
Sbjct: 167 NEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVS-AF 225

Query: 270 QYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLA 328
           + F++M E++ +TW  +I    + G + E +++F  M    + P+ FT + +I+ACA + 
Sbjct: 226 KVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANME 285

Query: 329 ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC---GNISDSQKIFSEMSDRDLVTWTS 385
            L  GQQ+H+  +R GL  +  +   LI+MYAKC   G++  ++KIF ++ D ++ +WT+
Sbjct: 286 LLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTA 345

Query: 386 MMIGYGAH-GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDY 444
           M+ GY    G+ +EA++LF  M+ + V P+   F + L AC++   +  G + F      
Sbjct: 346 MITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKL 405

Query: 445 NVNPNKEIYGCVVDLLGRAGRVKEA 469
             +    +   ++ +  R+GR+ +A
Sbjct: 406 GFSSVNCVANSLISMYARSGRIDDA 430



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 137/264 (51%), Gaps = 3/264 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A +LI  Y   G I++AR  FD + E++++S+  +I  Y       +A  +F E+    
Sbjct: 413 VANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQG 472

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           +  +AFT +S+L     + ++     +H   IK GL+ +  V N+L+ +Y+ C  ++++A
Sbjct: 473 MGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCG-NIESA 531

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             VF DM+ +N +SWT++ITG+A  G     L +F +ML EGV  N  ++   + AC+  
Sbjct: 532 FQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHV 591

Query: 228 GWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLITWNT 285
           G V+ G K   +   +HG    +     I+D+  R   LS+A Q+ + M  K D + W T
Sbjct: 592 GLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRT 651

Query: 286 IIAGYEKSGSSECLNMFSKMKSER 309
            +      G+ E     +KM  E+
Sbjct: 652 FLGACRVHGNLELGKHAAKMIIEQ 675



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 137/276 (49%), Gaps = 4/276 (1%)

Query: 191 HSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLP 250
           ++G  +  +   + M+ +G   +  ++S+ ++ C  T     G L+H  + +     +  
Sbjct: 43  NNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSV 102

Query: 251 VMNSILDMYCRFDCLSDANQYFDEM-TEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSE 308
            +NS++ +Y +      A   F  M + +DLI+W+ +++ +  +      L  F  M   
Sbjct: 103 TLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIEN 162

Query: 309 RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG-LDGNLALANALIDMYAKC-GNIS 366
            + PN + F +   AC+T   +S G  +   +++ G L  ++ +   LIDM+ K  G++ 
Sbjct: 163 GYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLV 222

Query: 367 DSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS 426
            + K+F +M +R+ VTWT M+      G+  EAI+LF +M+ SG  PDR     V++AC+
Sbjct: 223 SAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACA 282

Query: 427 HAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           +  L+  G +       + +  ++ +  C++++  +
Sbjct: 283 NMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAK 318



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 3/169 (1%)

Query: 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKI 371
           P+  T++  +  C    +   G  VH  + +  L  +    N+LI +Y+KCG    +  I
Sbjct: 64  PDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSI 123

Query: 372 FSEM-SDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           F  M S RDL++W++M+  +  +  G  A+  F +M+++G  P+   F A   ACS A  
Sbjct: 124 FRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEF 183

Query: 431 VDEGLKYFKSMNDYNVNPNKEIYGC-VVDLLGRA-GRVKEAYELIKSMP 477
           V  G   F  +       +    GC ++D+  +  G +  A+++ + MP
Sbjct: 184 VSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMP 232


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/567 (38%), Positives = 335/567 (59%), Gaps = 5/567 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           ++ AT L   Y       +AR +FD MP RD V+W  ++AGY        A  + V M  
Sbjct: 260 ALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQE 319

Query: 106 NE-VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
            +   P+A TL SVL AC   ++L     VH  A++ G +  + V  +++DVY  C  ++
Sbjct: 320 EDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCG-AV 378

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           D+AR VF+ M+ +N VSW  +I GYA +G+    L +FK M+ EGV++   S   A+ AC
Sbjct: 379 DSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHAC 438

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
              G++  G+ +H  +++ G  SN+ VMN+++ MYC+      A Q FDE+  K  ++WN
Sbjct: 439 GELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWN 498

Query: 285 TIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +I G  ++GSSE  + +FS+M+ E   P+ FT  SII A A ++     + +H   +R 
Sbjct: 499 AMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRL 558

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
            LD ++ +  ALIDMYAKCG +S ++ +F+   DR ++TW +M+ GYG+HG GK A+ELF
Sbjct: 559 HLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELF 618

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGR 462
           +EM  SG  P+   F++VL+ACSHAGLVDEG +YF SM  DY + P  E YG +VDLLGR
Sbjct: 619 EEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGR 678

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AG++ EA+  I+ MP +P  SV+G +LGACK H+   L + +A R+ +L+P     +++L
Sbjct: 679 AGKLHEAWSFIQKMPMEPGISVYGAMLGACKLHKNVELAEESAQRIFELEPEEGVYHVLL 738

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           +NIYA    W++ A+ R  M   G +K  G S +++++++  F +        + +Y  L
Sbjct: 739 ANIYANASLWKDVARVRTAMEKKGLQKTPGWSIVQLKNEIHTFYSGSTNHQQAKDIYARL 798

Query: 583 EMLIRHMNETAYEPDIDCLIHDLEGET 609
             LI  +    Y PD D  IHD+E + 
Sbjct: 799 AKLIEEIKAVGYVPDTDS-IHDVEDDV 824



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/370 (28%), Positives = 184/370 (49%), Gaps = 7/370 (1%)

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P   T +S+LK C     L+    VH      GL        +L ++YA C    D AR 
Sbjct: 223 PVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGD-ARR 281

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAVRACASTG 228
           VF+ M  ++ V+W  L+ GYA +G     +G+   M  E G   +  +    + ACA   
Sbjct: 282 VFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQ 341

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            +   + +HA  ++ GF   + V  +ILD+YC+   +  A + FD M +++ ++WN +I 
Sbjct: 342 ALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIK 401

Query: 289 GYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           GY ++G ++E L +F +M  E       +  + + AC  L  L  G++VH  +VR GL+ 
Sbjct: 402 GYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLES 461

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           N+ + NALI MY KC     + ++F E+  +  V+W +M++G   +G  ++A+ LF  M 
Sbjct: 462 NVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQ 521

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIY--GCVVDLLGRAGR 465
              V+PD    ++++ A   A + D     +       ++ ++++Y    ++D+  + GR
Sbjct: 522 LENVKPDSFTLVSIIPAL--ADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGR 579

Query: 466 VKEAYELIKS 475
           V  A  L  S
Sbjct: 580 VSIARSLFNS 589



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 146/282 (51%), Gaps = 3/282 (1%)

Query: 216 SFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM 275
           +F+  ++ CA+   ++ G+ +HA +   G         ++ +MY +     DA + FD M
Sbjct: 227 TFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRM 286

Query: 276 TEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFS-PNCFTFTSIIAACATLAALSCG 333
             +D + WN ++AGY ++G +E  + M  +M+ E    P+  T  S++ ACA   AL   
Sbjct: 287 PARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGAC 346

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
           ++VHA  VR G D  + ++ A++D+Y KCG +  ++K+F  M DR+ V+W +M+ GY  +
Sbjct: 347 REVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAEN 406

Query: 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIY 453
           G   EA+ LF  MV  GV    +  +A L AC   G +DEG +  + +    +  N  + 
Sbjct: 407 GDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVM 466

Query: 454 GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
             ++ +  +  R   A ++   + +K   S W  ++  C ++
Sbjct: 467 NALITMYCKCKRTDLAAQVFDELGYKTRVS-WNAMILGCTQN 507


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/560 (38%), Positives = 338/560 (60%), Gaps = 3/560 (0%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108
           A  L+  Y   G ++ A  +F++MP+ DVVSW  +I+G       ++A  + ++M  + +
Sbjct: 240 ANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGL 299

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
            PN FTLSS+LKAC G  +      +HG  IK   +   Y+   L+D+YA     +D+AR
Sbjct: 300 VPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHF-LDDAR 358

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            VF+ M  ++ +    LI+G +H G     L +F E+  EG+ +N  + +  +++ AS  
Sbjct: 359 KVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLE 418

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
             S  + +HA  +K GF  +  V+N ++D Y +  CLSDAN+ F+E +  D+I   ++I 
Sbjct: 419 AASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMIT 478

Query: 289 GYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
              +    E  + +F +M  +   P+ F  +S++ ACA+L+A   G+QVHA +++R    
Sbjct: 479 ALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMS 538

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           +    NAL+  YAKCG+I D++  FS + +R +V+W++M+ G   HGHGK A+ELF  MV
Sbjct: 539 DAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMV 598

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRV 466
             G+ P+ I   +VL AC+HAGLVDE  +YF SM + + ++  +E Y C++DLLGRAG++
Sbjct: 599 DEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKL 658

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            +A EL+ SMPF+ + S+WG LLGA + H+ P LGKLAA ++  L+P   GT+++L+N Y
Sbjct: 659 DDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTY 718

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           A+ G W E AK RK+M+    KKE  MSWIEV+DKV  FI  DK    T+ +Y  L  L 
Sbjct: 719 ASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELG 778

Query: 587 RHMNETAYEPDIDCLIHDLE 606
             M++  + P++D  +HDL+
Sbjct: 779 DLMSKAGFVPNVDVDLHDLD 798



 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 132/451 (29%), Positives = 230/451 (50%), Gaps = 4/451 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEM-PERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
            +A  L+  Y   G +++AR +F+E   ER+ VSW  +++ Y   +    A  VF EMV 
Sbjct: 136 FVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVW 195

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           + + P  F  S V+ AC G +++     VH M ++ G +  ++  N+L+D+Y      +D
Sbjct: 196 SGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMG-RVD 254

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A ++F  M   + VSW  LI+G   +G+ +  + +  +M   G+  N ++ S  ++AC+
Sbjct: 255 IASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACS 314

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
             G    G+ IH  +IK    S+  +   ++DMY +   L DA + FD M  +DLI  N 
Sbjct: 315 GAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNA 374

Query: 286 IIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I+G    G   E L++F +++ E    N  T  +++ + A+L A S  +QVHA  V+ G
Sbjct: 375 LISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIG 434

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
              +  + N LID Y KC  +SD+ ++F E S  D++  TSM+       HG+ AI+LF 
Sbjct: 435 FIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFM 494

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
           EM++ G+ PD  V  ++L AC+     ++G +    +       +      +V    + G
Sbjct: 495 EMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCG 554

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            +++A     S+P +   S W  ++G   +H
Sbjct: 555 SIEDAELAFSSLPERGVVS-WSAMIGGLAQH 584



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/362 (30%), Positives = 189/362 (52%), Gaps = 6/362 (1%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           AR +FDE+P+   VSW+ ++  Y++      A   F  M    V  N F L  VLK    
Sbjct: 56  ARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD 115

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM-KWKNDVSWT 183
            +     A VH MA+  G    ++V N+L+ +Y      MD+AR VFN+    +N VSW 
Sbjct: 116 ARL---GAQVHAMAMATGFGSDVFVANALVAMYGGFGF-MDDARRVFNEADSERNAVSWN 171

Query: 184 TLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH 243
            L++ Y  +      + VF EM+  G++   + FS  V AC  +  +  G+ +HA V++ 
Sbjct: 172 GLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRM 231

Query: 244 GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMF 302
           G+  ++   N+++DMY +   +  A+  F++M + D+++WN +I+G   +G     + + 
Sbjct: 232 GYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELL 291

Query: 303 SKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362
            +MK     PN FT +SI+ AC+   A   G+Q+H  +++   D +  +   L+DMYAK 
Sbjct: 292 LQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKN 351

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
             + D++K+F  M  RDL+   +++ G    G   EA+ LF E+ K G+  +R    AVL
Sbjct: 352 HFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVL 411

Query: 423 TA 424
            +
Sbjct: 412 KS 413



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/387 (29%), Positives = 196/387 (50%), Gaps = 15/387 (3%)

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC---CISMDNA 167
           +A T+S  L      ++L   A +H   +K G   S    N L+  Y+ C   C     A
Sbjct: 3   SAGTISQQLTRYAAAQALLPGAHLHASLLKSGSLASF--RNHLISFYSKCRRPCC----A 56

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R VF+++     VSW++L+T Y+++G     +  F  M  EGV  N ++  + ++     
Sbjct: 57  RRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDA 116

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLITWNTI 286
                G  +HA  +  GFGS++ V N+++ MY  F  + DA + F+E  +E++ ++WN +
Sbjct: 117 ---RLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGL 173

Query: 287 IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           ++ Y K+    + + +F +M      P  F F+ ++ AC     +  G+QVHA +VR G 
Sbjct: 174 MSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGY 233

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           D ++  ANAL+DMY K G +  +  IF +M D D+V+W +++ G   +GH   AIEL  +
Sbjct: 234 DKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQ 293

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M  SG+ P+     ++L ACS AG  D G +    M   N + +  I   +VD+  +   
Sbjct: 294 MKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHF 353

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGAC 492
           + +A ++   M F  D  +   L+  C
Sbjct: 354 LDDARKVFDWM-FHRDLILCNALISGC 379



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 116/419 (27%), Positives = 202/419 (48%), Gaps = 39/419 (9%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +   L+  Y     +++AR +FD M  RD++    +I+G +    H++A ++F E+ +  
Sbjct: 340 IGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEG 399

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDN 166
           +  N  TL++VLK+   +++ S    VH +A+K G     +V N L+D Y  C C+S  +
Sbjct: 400 LGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLS--D 457

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  VF +    + ++ T++IT  +   +G G + +F EML +G+E +P+  S  + ACAS
Sbjct: 458 ANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACAS 517

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
                 GK +HA +IK  F S+    N+++  Y +   + DA   F  + E+ +++W+ +
Sbjct: 518 LSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAM 577

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-- 343
           I G  + G  +  L +F +M  E  +PN  T TS++ AC            HAG+V    
Sbjct: 578 IGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACN-----------HAGLVDEAK 626

Query: 344 ----------GLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGA 392
                     G+D      + +ID+  + G + D+ ++ + M    +   W +++     
Sbjct: 627 RYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRV 686

Query: 393 HGH---GKEAIE--LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV 446
           H     GK A E     E  KSG      V +A   A   AG+ +E  K  K M D N+
Sbjct: 687 HKDPELGKLAAEKLFILEPEKSGTH----VLLANTYAS--AGMWNEVAKVRKLMKDSNI 739


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/560 (38%), Positives = 338/560 (60%), Gaps = 3/560 (0%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108
           A  L+  Y   G ++ A  +F++MP+ DVVSW  +I+G       ++A  + ++M  + +
Sbjct: 240 ANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGL 299

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
            PN FTLSS+LKAC G  +      +HG  IK   +   Y+   L+D+YA     +D+AR
Sbjct: 300 VPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHF-LDDAR 358

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            VF+ M  ++ +    LI+G +H G     L +F E+  EG+ +N  + +  +++ AS  
Sbjct: 359 KVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLE 418

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
             S  + +HA  +K GF  +  V+N ++D Y +  CLSDAN+ F+E +  D+I   ++I 
Sbjct: 419 AASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMIT 478

Query: 289 GYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
              +    E  + +F +M  +   P+ F  +S++ ACA+L+A   G+QVHA +++R    
Sbjct: 479 ALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMS 538

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           +    NAL+  YAKCG+I D++  FS + +R +V+W++M+ G   HGHGK A+ELF  MV
Sbjct: 539 DAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMV 598

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRV 466
             G+ P+ I   +VL AC+HAGLVDE  +YF SM + + ++  +E Y C++DLLGRAG++
Sbjct: 599 DEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKL 658

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            +A EL+ SMPF+ + S+WG LLGA + H+ P LGKLAA ++  L+P   GT+++L+N Y
Sbjct: 659 DDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTY 718

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           A+ G W E AK RK+M+    KKE  MSWIEV+DKV  FI  DK    T+ +Y  L  L 
Sbjct: 719 ASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELG 778

Query: 587 RHMNETAYEPDIDCLIHDLE 606
             M++  + P++D  +HDL+
Sbjct: 779 DLMSKAGFVPNVDVDLHDLD 798



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 132/451 (29%), Positives = 230/451 (50%), Gaps = 4/451 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEM-PERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
            +A  L+  Y   G +++AR +F+E   ER+ VSW  +++ Y   +    A  VF EMV 
Sbjct: 136 FVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVW 195

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           + + P  F  S V+ AC G +++     VH M ++ G +  ++  N+L+D+Y      +D
Sbjct: 196 SGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMG-RVD 254

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A ++F  M   + VSW  LI+G   +G+ +  + +  +M   G+  N ++ S  ++AC+
Sbjct: 255 IASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACS 314

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
             G    G+ IH  +IK    S+  +   ++DMY +   L DA + FD M  +DLI  N 
Sbjct: 315 GAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNA 374

Query: 286 IIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I+G    G   E L++F +++ E    N  T  +++ + A+L A S  +QVHA  V+ G
Sbjct: 375 LISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIG 434

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
              +  + N LID Y KC  +SD+ ++F E S  D++  TSM+       HG+ AI+LF 
Sbjct: 435 FIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFM 494

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
           EM++ G+ PD  V  ++L AC+     ++G +    +       +      +V    + G
Sbjct: 495 EMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCG 554

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            +++A     S+P +   S W  ++G   +H
Sbjct: 555 SIEDAELAFSSLPERGVVS-WSAMIGGLAQH 584



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/362 (30%), Positives = 188/362 (51%), Gaps = 6/362 (1%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           AR  FDE+P+   VSW+ ++  Y++      A   F  M    V  N F L  VLK    
Sbjct: 56  ARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD 115

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM-KWKNDVSWT 183
            +     A VH MA+  G    ++V N+L+ +Y      MD+AR VFN+    +N VSW 
Sbjct: 116 ARL---GAQVHAMAMATGFGSDVFVANALVAMYGGFGF-MDDARRVFNEADSERNAVSWN 171

Query: 184 TLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH 243
            L++ Y  +      + VF EM+  G++   + FS  V AC  +  +  G+ +HA V++ 
Sbjct: 172 GLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRM 231

Query: 244 GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMF 302
           G+  ++   N+++DMY +   +  A+  F++M + D+++WN +I+G   +G     + + 
Sbjct: 232 GYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELL 291

Query: 303 SKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362
            +MK     PN FT +SI+ AC+   A   G+Q+H  +++   D +  +   L+DMYAK 
Sbjct: 292 LQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKN 351

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
             + D++K+F  M  RDL+   +++ G    G   EA+ LF E+ K G+  +R    AVL
Sbjct: 352 HFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVL 411

Query: 423 TA 424
            +
Sbjct: 412 KS 413



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 114/387 (29%), Positives = 195/387 (50%), Gaps = 15/387 (3%)

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC---CISMDNA 167
           +A T+S  L      ++L   A +H   +K G   S    N L+  Y+ C   C     A
Sbjct: 3   SAGTISQQLTRYAAAQALLPGAHLHASLLKSGSLASF--RNHLISFYSKCRRPCC----A 56

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R  F+++     VSW++L+T Y+++G     +  F  M  EGV  N ++  + ++     
Sbjct: 57  RRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDA 116

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLITWNTI 286
                G  +HA  +  GFGS++ V N+++ MY  F  + DA + F+E  +E++ ++WN +
Sbjct: 117 ---RLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGL 173

Query: 287 IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           ++ Y K+    + + +F +M      P  F F+ ++ AC     +  G+QVHA +VR G 
Sbjct: 174 MSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGY 233

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           D ++  ANAL+DMY K G +  +  IF +M D D+V+W +++ G   +GH   AIEL  +
Sbjct: 234 DKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQ 293

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M  SG+ P+     ++L ACS AG  D G +    M   N + +  I   +VD+  +   
Sbjct: 294 MKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHF 353

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGAC 492
           + +A ++   M F  D  +   L+  C
Sbjct: 354 LDDARKVFDWM-FHRDLILCNALISGC 379



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 116/419 (27%), Positives = 202/419 (48%), Gaps = 39/419 (9%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +   L+  Y     +++AR +FD M  RD++    +I+G +    H++A ++F E+ +  
Sbjct: 340 IGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEG 399

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDN 166
           +  N  TL++VLK+   +++ S    VH +A+K G     +V N L+D Y  C C+S  +
Sbjct: 400 LGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLS--D 457

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  VF +    + ++ T++IT  +   +G G + +F EML +G+E +P+  S  + ACAS
Sbjct: 458 ANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACAS 517

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
                 GK +HA +IK  F S+    N+++  Y +   + DA   F  + E+ +++W+ +
Sbjct: 518 LSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAM 577

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-- 343
           I G  + G  +  L +F +M  E  +PN  T TS++ AC            HAG+V    
Sbjct: 578 IGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACN-----------HAGLVDEAK 626

Query: 344 ----------GLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGA 392
                     G+D      + +ID+  + G + D+ ++ + M    +   W +++     
Sbjct: 627 RYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRV 686

Query: 393 HGH---GKEAIE--LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV 446
           H     GK A E     E  KSG      V +A   A   AG+ +E  K  K M D N+
Sbjct: 687 HKDPELGKLAAEKLFILEPEKSGTH----VLLANTYAS--AGMWNEVAKVRKLMKDSNI 739


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/560 (38%), Positives = 335/560 (59%), Gaps = 3/560 (0%)

Query: 48   LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
            LA  L+  Y   G + EA+ +F+    RDV+SW  MIAG+     +  A+ +F EM   E
Sbjct: 468  LANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEE 527

Query: 108  VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
            + P+  T +SVL  CK  ++L     +HG   + GL+  + + N+L+++Y  C  S+ +A
Sbjct: 528  LEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCG-SLQDA 586

Query: 168  RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
            R VF+ ++ ++ +SWT +I G A  G     + +F +M  EG      +FS  ++ C S+
Sbjct: 587  RNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSS 646

Query: 228  GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
              +  GK + A ++  G+  +  V N+++  Y +   ++DA + FD+M  +D+++WN II
Sbjct: 647  ACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKII 706

Query: 288  AGYEKSGSSECLNMFS-KMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            AGY ++G  +    F+ +M+ +   PN F+F S++ AC++ +AL  G++VHA IV+R L 
Sbjct: 707  AGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQ 766

Query: 347  GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            G++ +  ALI MYAKCG+  ++Q++F  + ++++VTW +M+  Y  HG   +A+  F+ M
Sbjct: 767  GDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCM 826

Query: 407  VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGR 465
             K G++PD   F ++L+AC+HAGLV EG + F SM ++Y V P  E YGC+V LLGRA R
Sbjct: 827  EKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARR 886

Query: 466  VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
             +EA  LI  MPF PD +VW  LLGAC+ H    L + AA   L L       YI+LSN+
Sbjct: 887  FQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNV 946

Query: 526  YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
            YAA G+W++ AK R++M G G +KE G SWIEV + +  FIA D+    T  +Y  L+ L
Sbjct: 947  YAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRL 1006

Query: 586  IRHMNETAYEPDIDCLIHDL 605
               M E  Y PD   ++HDL
Sbjct: 1007 SVEMEEAGYFPDTQHVLHDL 1026



 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 128/466 (27%), Positives = 237/466 (50%), Gaps = 11/466 (2%)

Query: 31  KSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSF 90
           K+  Q DP +          +L+  Y   G +  AR +F  +  RDVVS+  M+  Y   
Sbjct: 156 KAGYQRDPRV--------QNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQK 207

Query: 91  NCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVE 150
               +   +F +M    ++P+  T  ++L A      L     +H + ++EGL   I V 
Sbjct: 208 AYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVG 267

Query: 151 NSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGV 210
            +L+ +   C   +D+A+  F     ++ V +  LI   A  G+       +  M  +GV
Sbjct: 268 TALVTMCVRCG-DVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGV 326

Query: 211 EMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQ 270
            +N  ++   + AC+++  +  GKLIH+ + + G  S++ + N+++ MY R   L  A +
Sbjct: 327 ALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARE 386

Query: 271 YFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAA 329
            F  M ++DLI+WN IIAGY  +    E + ++ +M+SE   P   TF  +++ACA  +A
Sbjct: 387 LFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSA 446

Query: 330 LSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIG 389
            + G+ +H  I+R G+  N  LANAL++MY +CG++ ++Q +F     RD+++W SM+ G
Sbjct: 447 YADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAG 506

Query: 390 YGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN 449
           +  HG  + A +LF EM    + PD I F +VL+ C +   ++ G +    + +  +  +
Sbjct: 507 HAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLD 566

Query: 450 KEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
             +   ++++  R G +++A  +  S+  + D   W  ++G C + 
Sbjct: 567 VNLGNALINMYIRCGSLQDARNVFHSLQHR-DVMSWTAMIGGCADQ 611



 Score =  228 bits (581), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 129/454 (28%), Positives = 230/454 (50%), Gaps = 4/454 (0%)

Query: 44  GPSILATNL-IKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           GP I  +NL I  Y     + +A  +F EMP RDV+SW  +I+ Y       +A+ +F E
Sbjct: 59  GPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEE 118

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M      PN  T  S+L AC     L N   +H   IK G +    V+NSL+ +Y  C  
Sbjct: 119 MQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCG- 177

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            +  AR VF  +  ++ VS+ T++  YA        LG+F +M  EG+  +  ++   + 
Sbjct: 178 DLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLD 237

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           A  +   +  GK IH   ++ G  S++ V  +++ M  R   +  A Q F    ++D++ 
Sbjct: 238 AFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVV 297

Query: 283 WNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           +N +IA   + G + E    + +M+S+  + N  T+ SI+ AC+T  AL  G+ +H+ I 
Sbjct: 298 YNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHIS 357

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
             G   ++ + NALI MYA+CG++  ++++F  M  RDL++W +++ GY       EA+ 
Sbjct: 358 EDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMR 417

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461
           L+ +M   GV+P R+ F+ +L+AC+++    +G    + +    +  N  +   ++++  
Sbjct: 418 LYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYR 477

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           R G + EA  + +    + D   W  ++    +H
Sbjct: 478 RCGSLMEAQNVFEGTQAR-DVISWNSMIAGHAQH 510



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 114/413 (27%), Positives = 215/413 (52%), Gaps = 5/413 (1%)

Query: 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFND 173
           T  ++L+ C   + L  A  +H   ++  +   I++ N L+++Y  C   +D A  VF +
Sbjct: 29  TYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLD-AHQVFKE 87

Query: 174 MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG 233
           M  ++ +SW +LI+ YA  G       +F+EM   G   N  ++   + AC S   +  G
Sbjct: 88  MPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENG 147

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EK 292
           K IH+ +IK G+  +  V NS+L MY +   L  A Q F  ++ +D++++NT++  Y +K
Sbjct: 148 KKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQK 207

Query: 293 SGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
           +   ECL +F +M SE  SP+  T+ +++ A  T + L  G+++H   V  GL+ ++ + 
Sbjct: 208 AYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVG 267

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
            AL+ M  +CG++  +++ F   +DRD+V + +++     HGH  EA E +  M   GV 
Sbjct: 268 TALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVA 327

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
            +R  ++++L ACS +  ++ G      +++   + + +I   ++ +  R G + +A EL
Sbjct: 328 LNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKAREL 387

Query: 473 IKSMPFKPDESVWGPLLG--ACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
             +MP K D   W  ++   A +E R   +     ++   +KP  +    +LS
Sbjct: 388 FYTMP-KRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLS 439



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 122/245 (49%), Gaps = 6/245 (2%)

Query: 316 TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEM 375
           T+ +++  C     L   +++HA +V   +  ++ L+N LI+MY KC ++ D+ ++F EM
Sbjct: 29  TYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEM 88

Query: 376 SDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGL 435
             RD+++W S++  Y   G  K+A +LF+EM  +G  P++I ++++LTAC     ++ G 
Sbjct: 89  PRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGK 148

Query: 436 KYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG--ACK 493
           K    +       +  +   ++ + G+ G +  A ++   +  + D   +  +LG  A K
Sbjct: 149 KIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPR-DVVSYNTMLGLYAQK 207

Query: 494 EHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIM--RGMGSKKEV 551
            +    LG    +    + P+ + TYI L + +      +E  +  K+    G+ S   V
Sbjct: 208 AYVKECLGLFGQMSSEGISPDKV-TYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRV 266

Query: 552 GMSWI 556
           G + +
Sbjct: 267 GTALV 271


>gi|222618271|gb|EEE54403.1| hypothetical protein OsJ_01428 [Oryza sativa Japonica Group]
          Length = 440

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/427 (46%), Positives = 293/427 (68%), Gaps = 5/427 (1%)

Query: 134 VHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM-KWKNDVSWTTLITGYAHS 192
           +  +A++ G++   YV N+L+D YA+    + +AR +F+ +   +   SWT++I GYA  
Sbjct: 5   LKAVAVRRGVDRMPYVVNALIDSYASLAEGVVDARRLFDALGSGRTAASWTSMIAGYARW 64

Query: 193 GNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVM 252
           G    GL +FK ML +GVE++ ++ SIA+ AC     +  G+ +H   IK     NL V+
Sbjct: 65  GQERTGLRLFKTMLKDGVELSTFACSIALHACTLVIDLCLGQQLHLQCIKKALDVNLAVV 124

Query: 253 NSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSP 312
           NS++DMYC    + DA   FD   E++LITWNT+IAGY +      L +  +M  E   P
Sbjct: 125 NSLIDMYCTCARILDARSLFDGTPERNLITWNTMIAGYSQCDPLMALQLLLEMNDE---P 181

Query: 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIF 372
           NCFT TSI +ACA LAAL CG+QVH  ++RR    +L + NAL+DMY+KCG+I++++ +F
Sbjct: 182 NCFTLTSITSACADLAALRCGKQVHGAVLRRSYSDDLQMGNALVDMYSKCGSITNAKNVF 241

Query: 373 SEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD 432
             M  +D  +WTSM+ GYG +G+G EA++LF  M+ +GV PD +VF++++++CSHAGLVD
Sbjct: 242 DRMGCKDKFSWTSMIAGYGMNGYGNEAVQLFSSMIHAGVHPDHVVFLSLISSCSHAGLVD 301

Query: 433 EGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
           EG  +F+SM N+YN+ PNKE+YG VV+LL RAGR++EA +LI +MPF PDE VWG LLGA
Sbjct: 302 EGWNFFRSMINEYNLQPNKEVYGSVVNLLARAGRLREALDLIDTMPFAPDEYVWGALLGA 361

Query: 492 CKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEV 551
            K H    +G+LAA ++ ++ P+ +  YI+L++IYAA  KW E+A  R+ +RG+GS+KE 
Sbjct: 362 SKMHNNVEMGRLAARKITEINPDDVKNYIMLASIYAAGSKWGEYAFTRRSLRGIGSRKEA 421

Query: 552 GMSWIEV 558
           G+SWIE+
Sbjct: 422 GISWIEL 428



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 114/402 (28%), Positives = 196/402 (48%), Gaps = 45/402 (11%)

Query: 52  LIKSY--FDEGLIEEARTLFDEMPE-RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108
           LI SY    EG+++ AR LFD +   R   SWT MIAGY  +        +F  M+++ V
Sbjct: 24  LIDSYASLAEGVVD-ARRLFDALGSGRTAASWTSMIAGYARWGQERTGLRLFKTMLKDGV 82

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
             + F  S  L AC  +  L     +H   IK+ L+ ++ V NSL+D+Y TC   +D AR
Sbjct: 83  ELSTFACSIALHACTLVIDLCLGQQLHLQCIKKALDVNLAVVNSLIDMYCTCARILD-AR 141

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            +F+    +N ++W T+I GY+        L   + +L    E N ++ +    ACA   
Sbjct: 142 SLFDGTPERNLITWNTMIAGYSQCDP----LMALQLLLEMNDEPNCFTLTSITSACADLA 197

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            +  GK +H AV++  +  +L + N+++DMY +   +++A   FD M  KD  +W ++IA
Sbjct: 198 ALRCGKQVHGAVLRRSYSDDLQMGNALVDMYSKCGSITNAKNVFDRMGCKDKFSWTSMIA 257

Query: 289 GYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           GY  +G  +E + +FS M      P+   F S+I++C+           HAG+V  G + 
Sbjct: 258 GYGMNGYGNEAVQLFSSMIHAGVHPDHVVFLSLISSCS-----------HAGLVDEGWN- 305

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
                 ++I+ Y    N+  +++++            S++      G  +EA++L D M 
Sbjct: 306 ---FFRSMINEY----NLQPNKEVYG-----------SVVNLLARAGRLREALDLIDTMP 347

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN 449
            +   PD  V+ A+L A      V+ G    + + +  +NP+
Sbjct: 348 FA---PDEYVWGALLGASKMHNNVEMGRLAARKITE--INPD 384



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 136/282 (48%), Gaps = 12/282 (4%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +  +LI  Y     I +AR+LFD  PER++++W  MIAGY+  +    A  + +EM  N+
Sbjct: 123 VVNSLIDMYCTCARILDARSLFDGTPERNLITWNTMIAGYSQCD-PLMALQLLLEM--ND 179

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
             PN FTL+S+  AC  + +L     VHG  ++      + + N+L+D+Y+ C  S+ NA
Sbjct: 180 -EPNCFTLTSITSACADLAALRCGKQVHGAVLRRSYSDDLQMGNALVDMYSKCG-SITNA 237

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           + VF+ M  K+  SWT++I GY  +G G   + +F  M+  GV  +   F   + +C+  
Sbjct: 238 KNVFDRMGCKDKFSWTSMIAGYGMNGYGNEAVQLFSSMIHAGVHPDHVVFLSLISSCSHA 297

Query: 228 GWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLITWNT 285
           G V  G     + + ++    N  V  S++++  R   L +A    D M    D   W  
Sbjct: 298 GLVDEGWNFFRSMINEYNLQPNKEVYGSVVNLLARAGRLREALDLIDTMPFAPDEYVWGA 357

Query: 286 IIAGYEKSGSSECLNMFSKMKSERFSP----NCFTFTSIIAA 323
           ++   +   + E +   +  K    +P    N     SI AA
Sbjct: 358 LLGASKMHNNVE-MGRLAARKITEINPDDVKNYIMLASIYAA 398


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/559 (37%), Positives = 334/559 (59%), Gaps = 4/559 (0%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T ++  Y    L+EEA  +FD MPERD+V W  +I+GY        A  + + M      
Sbjct: 214 TGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKR 273

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P++ T+ S+L A   + SL     +HG +++ G E  + V  +L+D+Y+ C  S+  ARL
Sbjct: 274 PDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCG-SVGTARL 332

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           +F+ M  K  VSW ++I GY  +G+    + +F++M+ E VEM   +   A+ ACA  G 
Sbjct: 333 IFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGD 392

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           V  G+ +H  + +   GS++ VMNS++ MY +   +  A + F+ +  K L++WN +I G
Sbjct: 393 VEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILG 452

Query: 290 YEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           Y ++G  +E ++ F KM+ +   P+ FT  S+I A A L+ L   + +H  ++R  LD N
Sbjct: 453 YAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKN 512

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           + +A AL+DMYAKCG +  ++K+F  M +R + TW +M+ GYG HG GK A+ELF++M K
Sbjct: 513 VFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKK 572

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVK 467
             ++P+ + F+ VL+ACSH+GLV+EG +YF SM  DY + P  + YG +VDLLGRA R+ 
Sbjct: 573 EVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLN 632

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527
           EA++ I+ MP +P  SV+G +LGAC+ H+   LG+ AA R+ DL P+  G +++L+NIYA
Sbjct: 633 EAWDFIQKMPIEPAISVFGAMLGACRIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYA 692

Query: 528 AEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIR 587
               W++ A+ R  M   G +K  G S +E++++V  F +        + +Y  LE L  
Sbjct: 693 TASMWDKVARVRTTMEKKGIQKTPGWSVVELQNEVHTFYSGTTSHPQAKKIYAFLETLGN 752

Query: 588 HMNETAYEPDIDCLIHDLE 606
            +    Y PD +  +HD+E
Sbjct: 753 RIKAAGYMPDTNS-VHDVE 770



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 139/535 (25%), Positives = 251/535 (46%), Gaps = 23/535 (4%)

Query: 2   RTKRLLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKG---PSILATNLIKSYFD 58
           RT    +Y  + H +K P  I   L +  K   Q  P +I  G     +  T L+  +  
Sbjct: 63  RTPSSRTYIPS-HVYKHPSAILLELCTSMKELHQFIPLIIKNGLYSEHLFQTKLVSLFCK 121

Query: 59  EGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSV 118
            G + EA  +F  + ++    +  M+ GY   +  + A + F  M  + V P  +  + +
Sbjct: 122 FGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYL 181

Query: 119 LKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKN 178
           LK C     L     +H   I  G   +++    ++++YA C + ++ A  +F+ M  ++
Sbjct: 182 LKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRL-VEEAYKMFDRMPERD 240

Query: 179 DVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHA 238
            V W T+I+GYA +G G   L +   M  EG   +  +    + A A  G +  G+ IH 
Sbjct: 241 LVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHG 300

Query: 239 AVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SE 297
             ++ GF S + V  +++DMY +   +  A   FD MT K +++WN++I GY ++G    
Sbjct: 301 YSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGA 360

Query: 298 CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALID 357
            + +F KM  E+      T    + ACA L  +  G+ VH  + +  L  ++++ N+LI 
Sbjct: 361 AMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLIS 420

Query: 358 MYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIV 417
           MY+KC  +  + +IF  +  + LV+W +M++GY  +G   EAI+ F +M    ++PD   
Sbjct: 421 MYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFT 480

Query: 418 FMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMP 477
            ++V+ A +   ++ +       +    ++ N  +   +VD+  + G V  A +L   M 
Sbjct: 481 MVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMM- 539

Query: 478 FKPDE---SVWGPLLGACKEHRLPNLGKLAALRVLD------LKPNMMGTYIILS 523
              DE   + W  ++     H    LGK AAL + +      +KPN +    +LS
Sbjct: 540 ---DERHVTTWNAMIDGYGTH---GLGK-AALELFEKMKKEVIKPNEVTFLCVLS 587



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 163/344 (47%), Gaps = 3/344 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           ++T L+  Y   G +  AR +FD M  + VVSW  MI GY        A  +F +M+  +
Sbjct: 313 VSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQ 372

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V     T+   L AC  +  +     VH +  +  L   + V NSL+ +Y+  C  +D A
Sbjct: 373 VEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSK-CKRVDIA 431

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             +F +++ K  VSW  +I GYA +G     +  F +M L+ ++ + ++    + A A  
Sbjct: 432 AEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAEL 491

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +   K IH  VI+     N+ V  +++DMY +   +  A + FD M E+ + TWN +I
Sbjct: 492 SVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMI 551

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-GL 345
            GY   G     L +F KMK E   PN  TF  +++AC+    +  G Q    + +  GL
Sbjct: 552 DGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGL 611

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIG 389
           +  +    A++D+  +   ++++     +M     ++    M+G
Sbjct: 612 EPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLG 655


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/597 (37%), Positives = 337/597 (56%), Gaps = 39/597 (6%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +AT LI  Y   G I  A  +F +M ER+VVSWT +I         N+A+ ++ +M++  
Sbjct: 194 VATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAG 253

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           ++PNA T  S+L +C   ++L+    +H    + GLE  + V N+L+ +Y  C  S+  A
Sbjct: 254 ISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCN-SVQEA 312

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGG-----LGVFKEMLLEGVEMNPYSFSIAVR 222
           R +F+ M  ++ +SW+ +I GYA SG            + + M  EGV  N  +F   +R
Sbjct: 313 REIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILR 372

Query: 223 ACASTGWVSFGKLIHAAVIKHGF-------------------------------GSNLPV 251
           AC + G +  G+ IHA + K GF                                 N+  
Sbjct: 373 ACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVA 432

Query: 252 MNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERF 310
             S L MY +   LS A + F EM  +++++WN +IAGY ++G   +   + S MK+E F
Sbjct: 433 WTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGF 492

Query: 311 SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQK 370
            P+  T  +I+ AC  LA L  G+ VHA  V+ GL+ +  +A +LI MY+KCG +++++ 
Sbjct: 493 QPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEART 552

Query: 371 IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           +F +MS+RD V W +M+ GYG HG G EA++LF  M+K  V P+ I   AV++ACS AGL
Sbjct: 553 VFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGL 612

Query: 431 VDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           V EG + F+ M  D+ + P K+ YGC+VDLLGRAGR++EA E I+SMP +PD SVW  LL
Sbjct: 613 VQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALL 672

Query: 490 GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKK 549
           GACK H    L + AA  +L+L+P+    YI LSNIYA  G+W++  K R++M   G KK
Sbjct: 673 GACKSHNNVQLAERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKK 732

Query: 550 EVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
           + G S IE+  ++  F+A D        ++  LE L + M E  Y PD+  ++HD++
Sbjct: 733 DRGESSIEIDGRIHTFVAEDCAHPEIDAIHAELETLTKEMKEAGYTPDMRFVLHDVD 789



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 135/485 (27%), Positives = 231/485 (47%), Gaps = 39/485 (8%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L  +LI  Y     +  A  +F  M  RDVV+W+ MIA Y   N   +A+  F  M    
Sbjct: 93  LGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDAN 152

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + PN  T  S+LKAC     L     +H +    G+E  + V  +L+ +Y+ C   +  A
Sbjct: 153 IEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCG-EISVA 211

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             VF+ M  +N VSWT +I   A          ++++ML  G+  N  +F   + +C + 
Sbjct: 212 CEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTP 271

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             ++ G+ IH+ + + G  +++ V N+++ MYC+ + + +A + FD M+++D+I+W+ +I
Sbjct: 272 EALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMI 331

Query: 288 AGYEKSGSS------ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           AGY +SG        E   +  +M+ E   PN  TF SI+ AC    AL  G+Q+HA + 
Sbjct: 332 AGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELS 391

Query: 342 RRGLDGNLALANALIDMYAKCGNI-------------------------------SDSQK 370
           + G + + +L  A+ +MYAKCG+I                               S ++K
Sbjct: 392 KVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEK 451

Query: 371 IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           +FSEM  R++V+W  M+ GY  +G   +  EL   M   G +PDR+  + +L AC     
Sbjct: 452 VFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAG 511

Query: 431 VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490
           ++ G           +  +  +   ++ +  + G+V EA  +   M  + D   W  +L 
Sbjct: 512 LERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNR-DTVAWNAMLA 570

Query: 491 ACKEH 495
              +H
Sbjct: 571 GYGQH 575



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 106/375 (28%), Positives = 207/375 (55%), Gaps = 7/375 (1%)

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           N+ T   V++ C   +   +  +VH    + G+E  IY+ NSL++ Y+     + +A  V
Sbjct: 55  NSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKF-EDVASAEQV 113

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F  M  ++ V+W+++I  YA + +       F+ M    +E N  +F   ++AC +   +
Sbjct: 114 FRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSIL 173

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII-AG 289
             G+ IH  V   G  +++ V  +++ MY +   +S A + F +MTE+++++W  II A 
Sbjct: 174 EKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQAN 233

Query: 290 YEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
            +    +E   ++ +M     SPN  TF S++ +C T  AL+ G+++H+ I  RGL+ ++
Sbjct: 234 AQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDM 293

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH-GKEAI----ELFD 404
            +ANALI MY KC ++ ++++IF  MS RD+++W++M+ GY   G+  KE+I    +L +
Sbjct: 294 IVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLE 353

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
            M + GV P+++ FM++L AC+  G +++G +    ++      ++ +   + ++  + G
Sbjct: 354 RMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCG 413

Query: 465 RVKEAYELIKSMPFK 479
            + EA ++   M  K
Sbjct: 414 SIYEAEQVFSKMANK 428



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 111/448 (24%), Positives = 209/448 (46%), Gaps = 51/448 (11%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHN-----QAWTVFV 101
           I+A  LI  Y     ++EAR +FD M +RDV+SW+ MIAGY      +     + + +  
Sbjct: 294 IVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLE 353

Query: 102 EMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC- 160
            M R  V PN  T  S+L+AC    +L     +H    K G E    ++ ++ ++YA C 
Sbjct: 354 RMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCG 413

Query: 161 -----------------------------CISMDNARLVFNDMKWKNDVSWTTLITGYAH 191
                                        C  + +A  VF++M  +N VSW  +I GYA 
Sbjct: 414 SIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQ 473

Query: 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251
           +G+      +   M  EG + +  +    + AC +   +  GKL+HA  +K G  S+  V
Sbjct: 474 NGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVV 533

Query: 252 MNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERF 310
             S++ MY +   +++A   FD+M+ +D + WN ++AGY + G   E +++F +M  ER 
Sbjct: 534 ATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERV 593

Query: 311 SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA------NALIDMYAKCGN 364
           SPN  T T++I+AC+    +  G+++      R +  +  +         ++D+  + G 
Sbjct: 594 SPNEITLTAVISACSRAGLVQEGREIF-----RMMQEDFKMTPRKQHYGCMVDLLGRAGR 648

Query: 365 ISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI-VFMAVL 422
           + ++++    M  + D+  W +++    +H + + A      +++  + P    V++ + 
Sbjct: 649 LQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILE--LEPSYASVYITLS 706

Query: 423 TACSHAGLVDEGLKYFKSMNDYNVNPNK 450
              + AG  D+  K  + M+D  +  ++
Sbjct: 707 NIYAQAGRWDDSTKVRRVMDDRGLKKDR 734



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 165/293 (56%), Gaps = 5/293 (1%)

Query: 199 LGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDM 258
           LG+ K+    G+ +N  ++   +  CA       GK++H  + + G   ++ + NS+++ 
Sbjct: 44  LGIIKQ---RGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINF 100

Query: 259 YCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTF 317
           Y +F+ ++ A Q F  MT +D++TW+++IA Y  +   ++  + F +M      PN  TF
Sbjct: 101 YSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITF 160

Query: 318 TSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD 377
            SI+ AC   + L  G+++H  +   G++ ++A+A ALI MY+KCG IS + ++F +M++
Sbjct: 161 LSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTE 220

Query: 378 RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY 437
           R++V+WT+++     H    EA EL+++M+++G+ P+ + F+++L +C+    ++ G + 
Sbjct: 221 RNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRI 280

Query: 438 FKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490
              +++  +  +  +   ++ +  +   V+EA E+   M  K D   W  ++ 
Sbjct: 281 HSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMS-KRDVISWSAMIA 332



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 105/203 (51%), Gaps = 1/203 (0%)

Query: 297 ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALI 356
           E + +   +K      N  T+  +I  CA       G+ VH  +   G++ ++ L N+LI
Sbjct: 39  EAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLI 98

Query: 357 DMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI 416
           + Y+K  +++ ++++F  M+ RD+VTW+SM+  Y  + H  +A + F+ M  + + P+RI
Sbjct: 99  NFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRI 158

Query: 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
            F+++L AC++  ++++G K    +    +  +  +   ++ +  + G +  A E+   M
Sbjct: 159 TFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKM 218

Query: 477 PFKPDESVWGPLLGACKEHRLPN 499
             +   S W  ++ A  +HR  N
Sbjct: 219 TERNVVS-WTAIIQANAQHRKLN 240



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 49/77 (63%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           +++AT+LI  Y   G + EART+FD+M  RD V+W  M+AGY       +A  +F  M++
Sbjct: 531 TVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLK 590

Query: 106 NEVNPNAFTLSSVLKAC 122
             V+PN  TL++V+ AC
Sbjct: 591 ERVSPNEITLTAVISAC 607


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/564 (36%), Positives = 338/564 (59%), Gaps = 4/564 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + T L+K Y   G  ++ R +F+++  RD+++W  MI G        +A  ++ +M R  
Sbjct: 382 VGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREG 441

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + PN  T   +L AC    +L     +H   +K+G    I V+N+L+ +YA C  S+ +A
Sbjct: 442 MMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCG-SIKDA 500

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           RL+FN M  K+ +SWT +I G A SG G   L VF++M   G++ N  +++  + AC+S 
Sbjct: 501 RLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSP 560

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             + +G+ IH  VI+ G  ++  V N++++MY     + DA Q FD MT++D++ +N +I
Sbjct: 561 AALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMI 620

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            GY       E L +F +++ E   P+  T+ +++ ACA   +L   +++H+ +++ G  
Sbjct: 621 GGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYL 680

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            + +L NAL+  YAKCG+ SD+  +F +M  R++++W +++ G   HG G++ ++LF+ M
Sbjct: 681 SDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERM 740

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGR 465
              G++PD + F+++L+ACSHAGL++EG +YF SM+ D+ + P  E YGC+VDLLGRAG+
Sbjct: 741 KMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQ 800

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           + E   LIK+MPF+ +  +WG LLGAC+ H    + + AA   L L P+    Y+ LS++
Sbjct: 801 LDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHM 860

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           YAA G W+  AK RK+M   G  KE G SWIEV DK+  F+A D+    ++ +Y  L+ L
Sbjct: 861 YAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDKLHYFVAEDRSHPESEKIYAELDKL 920

Query: 586 IRHMNETAYEPDIDCLIHDL-EGE 608
              M    Y PD   ++HD+ EGE
Sbjct: 921 THAMKMEGYVPDTRSVMHDVDEGE 944



 Score =  272 bits (696), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 151/494 (30%), Positives = 273/494 (55%), Gaps = 6/494 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A  ++  Y   G I EAR +FD+M  + VVSWT++I GY        A+ +F +M +  
Sbjct: 281 VANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEG 340

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V PN  T  +VL A  G  +L     VH   +  G E  + V  +L+ +YA C  S  + 
Sbjct: 341 VVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCG-SYKDC 399

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R VF  +  ++ ++W T+I G A  GN      ++ +M  EG+  N  ++ I + AC + 
Sbjct: 400 RQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNP 459

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             + +G+ IH+ V+K GF  ++ V N+++ MY R   + DA   F++M  KD+I+W  +I
Sbjct: 460 TALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMI 519

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            G  KSG  +E L +F  M+     PN  T+TSI+ AC++ AAL  G+++H  ++  GL 
Sbjct: 520 GGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLA 579

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            +  +AN L++MY+ CG++ D++++F  M+ RD+V + +M+ GY AH  GKEA++LFD +
Sbjct: 580 TDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRL 639

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
            + G++PD++ ++ +L AC+++G ++   +    +       +  +   +V    + G  
Sbjct: 640 QEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSF 699

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEH-RLPNLGKL-AALRVLDLKPNMMGTYIILSN 524
            +A  +   M  K +   W  ++G C +H R  ++ +L   +++  +KP+++ T++ L +
Sbjct: 700 SDALLVFDKM-MKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIV-TFVSLLS 757

Query: 525 IYAAEGKWEEFAKF 538
             +  G  EE  ++
Sbjct: 758 ACSHAGLLEEGRRY 771



 Score =  259 bits (661), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 151/491 (30%), Positives = 269/491 (54%), Gaps = 16/491 (3%)

Query: 52  LIKSYFDEGLIEEARTLFDEM--PERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           LI  Y   G IEEAR +++++   ER V SW  M+ GY  +    +A  +  EM ++ + 
Sbjct: 182 LINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLA 241

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
               T   +L +CK   +L     +H  A+K  L   + V N ++++YA C  S+  AR 
Sbjct: 242 LGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCG-SIHEARE 300

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           VF+ M+ K+ VSWT +I GYA  G+      +F++M  EGV  N  ++   + A +    
Sbjct: 301 VFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAA 360

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           + +GK +H+ ++  G  S+L V  +++ MY +     D  Q F+++  +DLI WNT+I G
Sbjct: 361 LKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGG 420

Query: 290 YEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
             + G+  E   ++ +M+ E   PN  T+  ++ AC    AL  G+++H+ +V+ G   +
Sbjct: 421 LAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFD 480

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           +++ NALI MYA+CG+I D++ +F++M  +D+++WT+M+ G    G G EA+ +F +M +
Sbjct: 481 ISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQ 540

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKE 468
           +G++P+R+ + ++L ACS    +D G +  + + +  +  +  +   +V++    G VK+
Sbjct: 541 AGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKD 600

Query: 469 AYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD------LKPNMMGTYIIL 522
           A ++   M  + D   +  ++G    H   NLGK  AL++ D      LKP+ + TYI +
Sbjct: 601 ARQVFDRMT-QRDIVAYNAMIGGYAAH---NLGK-EALKLFDRLQEEGLKPDKV-TYINM 654

Query: 523 SNIYAAEGKWE 533
            N  A  G  E
Sbjct: 655 LNACANSGSLE 665



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 118/435 (27%), Positives = 212/435 (48%), Gaps = 7/435 (1%)

Query: 94  NQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSL 153
           ++A  V   + +     N+     +LK C  +K L     VH   I+       Y  N+L
Sbjct: 123 DRAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNAL 182

Query: 154 MDVYATCCISMDNARLVFNDMKWKNDV--SWTTLITGYAHSGNGYGGLGVFKEMLLEGVE 211
           +++Y  C  S++ AR V+N +        SW  ++ GY   G     L + +EM   G+ 
Sbjct: 183 INMYIQCG-SIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLA 241

Query: 212 MNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQY 271
           +   +    + +C S   +  G+ IH   +K     ++ V N IL+MY +   + +A + 
Sbjct: 242 LGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREV 301

Query: 272 FDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAAL 330
           FD+M  K +++W  II GY   G SE    +F KM+ E   PN  T+ +++ A +  AAL
Sbjct: 302 FDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAAL 361

Query: 331 SCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY 390
             G+ VH+ I+  G + +LA+  AL+ MYAKCG+  D +++F ++ +RDL+ W +M+ G 
Sbjct: 362 KWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGL 421

Query: 391 GAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK 450
              G+ +EA E++ +M + G+ P++I ++ +L AC +   +  G +    +       + 
Sbjct: 422 AEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDI 481

Query: 451 EIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL--PNLGKLAALRV 508
            +   ++ +  R G +K+A  L   M  + D   W  ++G   +  L    L     ++ 
Sbjct: 482 SVQNALISMYARCGSIKDARLLFNKM-VRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQ 540

Query: 509 LDLKPNMMGTYIILS 523
             LKPN +    IL+
Sbjct: 541 AGLKPNRVTYTSILN 555



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 152/309 (49%), Gaps = 17/309 (5%)

Query: 266 SDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACA 325
           S+  +YF+  ++ + +  +T       +G    +++   ++ +    N   +  ++  C 
Sbjct: 93  SNGIRYFNGRSKANKLHSHTYKDERTITGKDRAMDVVQYLQQQGARVNSCDYMKMLKRCI 152

Query: 326 TLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEM--SDRDLVTW 383
            +  L  G++VH  I++     +    NALI+MY +CG+I +++++++++  ++R + +W
Sbjct: 153 EVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKLNHTERTVHSW 212

Query: 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG----LKYFK 439
            +M++GY  +G+ +EA++L  EM + G+   R   M +L++C     ++ G    ++  K
Sbjct: 213 NAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMK 272

Query: 440 SMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKE--HRL 497
           +   ++VN    +  C++++  + G + EA E+   M  K   S W  ++G   +  H  
Sbjct: 273 ARLLFDVN----VANCILNMYAKCGSIHEAREVFDKMETKSVVS-WTIIIGGYADCGHSE 327

Query: 498 PNLGKLAALRVLDLKPNMMGTYIILSNIYA--AEGKWEEFAKFRKIMRGMGSKKEVGMSW 555
                   ++   + PN + TYI + N ++  A  KW +      +  G  S   VG + 
Sbjct: 328 IAFEIFQKMQQEGVVPNRI-TYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTAL 386

Query: 556 IEVRDKVCG 564
           +++  K CG
Sbjct: 387 VKMYAK-CG 394


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/617 (36%), Positives = 348/617 (56%), Gaps = 49/617 (7%)

Query: 29  VKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYT 88
           VK S +++D  +        AT LI  Y   G I  A  +F +M ER+VVSWT +I    
Sbjct: 205 VKASGMETDVAV--------ATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANA 256

Query: 89  SFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIY 148
                N+A+ ++ +M++  ++PNA T  S+L +C   ++L+    +H    + GLE  + 
Sbjct: 257 QHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVV 316

Query: 149 VENSLMDVYATC-CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGG-----LGVF 202
           V N+L+ +Y  C CI   +AR  F+ M  ++ +SW+ +I GYA SG            + 
Sbjct: 317 VANALITMYCKCNCIQ--DARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLL 374

Query: 203 KEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR- 261
           + M  EGV  N  +F   ++AC+  G +  G+ IHA + K GF S+  +  +I +MY + 
Sbjct: 375 ERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKC 434

Query: 262 ----------------------------FDC--LSDANQYFDEMTEKDLITWNTIIAGYE 291
                                         C  L+ A + F EM+ +++++WN +IAGY 
Sbjct: 435 GSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYA 494

Query: 292 KSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           +SG  ++   + S MK E F P+  T  SI+ AC  L+AL  G+ VHA  V+ GL+ +  
Sbjct: 495 QSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTV 554

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           +A +LI MY+KCG +++++ +F ++S+RD V W +M+ GYG HG G EA++LF  M+K  
Sbjct: 555 VATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKER 614

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEA 469
           V P+ I F AV++AC  AGLV EG + F+ M  D+ + P K+ YGC+VDLLGRAGR++EA
Sbjct: 615 VPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEA 674

Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529
            E I+ MP +PD SVW  LLGACK H    L + AA  +L L+P+    Y+ LSNIYA  
Sbjct: 675 EEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHILRLEPSNASVYVTLSNIYAQA 734

Query: 530 GKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHM 589
           G+W++  K RK+M   G KK+ G S IE+  ++  F+A D        ++  LEML + M
Sbjct: 735 GRWDDSTKVRKVMDDKGLKKDRGESSIEIDGRIHTFVAEDCAHPEIDSIHAELEMLTKEM 794

Query: 590 NETAYEPDIDCLIHDLE 606
            E  Y PD+  ++HD++
Sbjct: 795 KEAGYTPDMRFVLHDVD 811



 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 140/486 (28%), Positives = 236/486 (48%), Gaps = 41/486 (8%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L  +LI  Y   G +     +F  M  RDVV+W+ MIA Y   N   +A+  F  M    
Sbjct: 115 LGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDAN 174

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC-ISMDN 166
           + PN  T  S+LKAC     L  A  +H +    G+E  + V  +L+ +Y+ C  IS+  
Sbjct: 175 IEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISL-- 232

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  +F  MK +N VSWT +I   A          ++++ML  G+  N  +F   + +C +
Sbjct: 233 ACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNT 292

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              ++ G+ IH+ + + G  +++ V N+++ MYC+ +C+ DA + FD M+++D+I+W+ +
Sbjct: 293 PEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAM 352

Query: 287 IAGYEKSGSS------ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           IAGY +SG        E   +  +M+ E   PN  TF SI+ AC+   AL  G+Q+HA I
Sbjct: 353 IAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEI 412

Query: 341 VRRGLDGNLALANALIDMYAKCGNI-------------------------------SDSQ 369
            + G + + +L  A+ +MYAKCG+I                               + ++
Sbjct: 413 SKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAE 472

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
           K+FSEMS R++V+W  M+ GY   G   +  EL   M   G +PDR+  +++L AC    
Sbjct: 473 KVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALS 532

Query: 430 LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
            ++ G           +  +  +   ++ +  + G V EA  +   +  + D   W  +L
Sbjct: 533 ALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNR-DTVAWNAML 591

Query: 490 GACKEH 495
               +H
Sbjct: 592 AGYGQH 597



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 106/385 (27%), Positives = 203/385 (52%), Gaps = 8/385 (2%)

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           N+ T   +++ C  ++   +  +VH    + GL   IY+ NSL++ Y+     + +   V
Sbjct: 77  NSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFG-DVASVEQV 135

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F  M  ++ V+W+++I  YA + +       F+ M    +E N  +F   ++AC +   +
Sbjct: 136 FRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSML 195

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII-AG 289
              + IH  V   G  +++ V  +++ MY +   +S A + F +M E+++++W  II A 
Sbjct: 196 EKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQAN 255

Query: 290 YEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
            +    +E   ++ KM     SPN  TF S++ +C T  AL+ G+++H+ I  RGL+ ++
Sbjct: 256 AQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDV 315

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHG-----KEAIELFD 404
            +ANALI MY KC  I D+++ F  MS RD+++W++M+ GY   G+       E  +L +
Sbjct: 316 VVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLE 375

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
            M + GV P+++ FM++L ACS  G +++G +    ++      ++ +   + ++  + G
Sbjct: 376 RMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCG 435

Query: 465 RVKEAYELIKSMPFKPDESVWGPLL 489
            + EA ++   M  K +   W  LL
Sbjct: 436 SIYEAEQVFSKMENK-NVVAWASLL 459



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 161/293 (54%), Gaps = 5/293 (1%)

Query: 199 LGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDM 258
           LG+ K+    G+ +N  ++   +  CA       GK++H  + + G   ++ + NS+++ 
Sbjct: 66  LGIIKQ---RGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINF 122

Query: 259 YCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTF 317
           Y +F  ++   Q F  MT +D++TW+++IA Y  +   ++  + F +MK     PN  TF
Sbjct: 123 YSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITF 182

Query: 318 TSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD 377
            SI+ AC   + L   +++H  +   G++ ++A+A ALI MY+KCG IS + +IF +M +
Sbjct: 183 LSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKE 242

Query: 378 RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY 437
           R++V+WT+++     H    EA EL+++M+++G+ P+ + F+++L +C+    ++ G + 
Sbjct: 243 RNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRI 302

Query: 438 FKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490
              +++  +  +  +   ++ +  +   +++A E    M  K D   W  ++ 
Sbjct: 303 HSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMS-KRDVISWSAMIA 354



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 109/217 (50%), Gaps = 5/217 (2%)

Query: 283 WNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           W    AG  K    E + +   +K      N  T+  II  CA L     G+ VH  +  
Sbjct: 51  WRLCKAGRLK----EAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDE 106

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            GL  ++ L N+LI+ Y+K G+++  +++F  M+ RD+VTW+SM+  Y  + H  +A + 
Sbjct: 107 LGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDT 166

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           F+ M  + + P+RI F+++L AC++  ++++  +    +    +  +  +   ++ +  +
Sbjct: 167 FERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSK 226

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN 499
            G +  A E+ + M  +   S W  ++ A  +HR  N
Sbjct: 227 CGEISLACEIFQKMKERNVVS-WTAIIQANAQHRKLN 262


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/562 (37%), Positives = 329/562 (58%), Gaps = 4/562 (0%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T ++  Y     I +A  +FD MPERD+V W  MI+GY        A  + + M      
Sbjct: 69  TGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHR 128

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P++ T+ S+L A    + L     VHG  ++ G E  + V  +L+D+Y+ C  S+  AR+
Sbjct: 129 PDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCG-SVSIARV 187

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           +F+ M  +  VSW ++I GY  SG+  G + +F++ML EGV+    +   A+ ACA  G 
Sbjct: 188 IFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGD 247

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           +  GK +H  V +    S++ VMNS++ MY +   +  A   F  +  K L++WN +I G
Sbjct: 248 LERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILG 307

Query: 290 YEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           Y ++G  +E LN F +M+S    P+ FT  S+I A A L+     + +H  ++RR LD N
Sbjct: 308 YAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKN 367

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           + +  AL+DMYAKCG I  ++K+F  M+ R ++TW +M+ GYG HG GK ++ELF EM K
Sbjct: 368 VFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKK 427

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVK 467
             ++P+ I F+  L+ACSH+GLV+EGL +F+SM  DY + P  + YG +VDLLGRAGR+ 
Sbjct: 428 GTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLN 487

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527
           +A++ I+ MP KP  +V+G +LGACK H+  +LG+ AA  +  L P+  G +++L+NIYA
Sbjct: 488 QAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHVLLANIYA 547

Query: 528 AEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIR 587
               W + AK R IM   G +K  G S +E+ ++V  F +       ++ +Y  LE L+ 
Sbjct: 548 TASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKKIYSYLETLVD 607

Query: 588 HMNETAYEPDIDCLIHDLEGET 609
            +    Y PD +  IHD+E + 
Sbjct: 608 EIRAAGYVPDTNS-IHDVEDDV 628



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 108/395 (27%), Positives = 196/395 (49%), Gaps = 2/395 (0%)

Query: 83  MIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG 142
           M+ GY   +  + A + F  M  + V P  +  + +LK C     L     +HG  I  G
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 143 LEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVF 202
              +++    ++++YA  C  +++A  +F+ M  ++ V W T+I+GYA +G     L + 
Sbjct: 61  FSWNLFAMTGVVNMYAK-CRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLV 119

Query: 203 KEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRF 262
             M  EG   +  +    + A A T  +  G  +H  V++ GF S + V  +++DMY + 
Sbjct: 120 LRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKC 179

Query: 263 DCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSII 321
             +S A   FD M  + +++WN++I GY +SG +E  + +F KM  E   P   T    +
Sbjct: 180 GSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGAL 239

Query: 322 AACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLV 381
            ACA L  L  G+ VH  + +  LD ++++ N+LI MY+KC  +  +  IF  + ++ LV
Sbjct: 240 HACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLV 299

Query: 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441
           +W +M++GY  +G   EA+  F EM    ++PD    ++V+ A +   +  +       +
Sbjct: 300 SWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLV 359

Query: 442 NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
               ++ N  +   +VD+  + G +  A +L   M
Sbjct: 360 IRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMM 394



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/355 (27%), Positives = 161/355 (45%), Gaps = 25/355 (7%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           ++T L+  Y   G +  AR +FD M  R VVSW  MI GY        A  +F +M+   
Sbjct: 168 VSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEG 227

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V P   T+   L AC  +  L     VH +  +  L+  + V NSL+ +Y+  C  +D A
Sbjct: 228 VQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSK-CKRVDIA 286

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             +F +++ K  VSW  +I GYA +G     L  F EM    ++ + ++    + A A  
Sbjct: 287 ADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAEL 346

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
                 K IH  VI+     N+ VM +++DMY +   +  A + FD M  + +ITWN +I
Sbjct: 347 SIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMI 406

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL- 345
            GY   G     + +F +MK     PN  TF   ++AC+           H+G+V  GL 
Sbjct: 407 DGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACS-----------HSGLVEEGLC 455

Query: 346 -----------DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIG 389
                      +  +    A++D+  + G ++ +     +M  +  +T    M+G
Sbjct: 456 FFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLG 510


>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 752

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/561 (38%), Positives = 334/561 (59%), Gaps = 5/561 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +++ LI  Y   G IE+   +F +M +R+VVSWT +IAG      + +A   F EM  ++
Sbjct: 194 VSSALIDMYMKVGKIEQGCRVFKKMTKRNVVSWTAIIAGLVHAGYNMEALLYFSEMWISK 253

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V  ++ T +  LKA      L +   +H   IK+G + S +V N+L  +Y  C    D  
Sbjct: 254 VGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCG-KADYV 312

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             +F  MK  + VSWTTLIT Y   G     +  FK M    V  N Y+F+  + ACA+ 
Sbjct: 313 MRLFEKMKMPDVVSWTTLITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANL 372

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
               +G+ IH  V++ G    L V NSI+ +Y +   L  A+  F  +T KD+I+W+TII
Sbjct: 373 AIAKWGEQIHGHVLRLGLVDALSVANSIVTLYSKSGLLKSASLVFHGITRKDIISWSTII 432

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           A Y + G + E  +  S M+ E   PN F  +S+++ C ++A L  G+QVHA ++  G+D
Sbjct: 433 AVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHVLCIGID 492

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
               + +ALI MY+KCG++ ++ KIF+ M   ++++WT+M+ GY  HG+ +EAI LF+++
Sbjct: 493 HEAMVHSALISMYSKCGSVEEASKIFNGMKINNIISWTAMINGYAEHGYSQEAINLFEKI 552

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGR 465
              G++PD + F+ VLTACSHAG+VD G  YF  M N+Y ++P+KE YGC++DLL RAGR
Sbjct: 553 SSVGLKPDYVTFIGVLTACSHAGMVDLGFYYFMLMTNEYQISPSKEHYGCIIDLLCRAGR 612

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           + EA  +I+SMP   D+ VW  LL +C+ H   + G+  A ++L L PN  GT+I L+NI
Sbjct: 613 LSEAEHMIRSMPCYTDDVVWSTLLRSCRVHGDVDRGRWTAEQLLRLDPNSAGTHIALANI 672

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           YAA+G+W+E A  RK+M+  G  KE G SW+ V DK+  F+A D+    ++++  VLE+L
Sbjct: 673 YAAKGRWKEAAHIRKLMKSKGVIKERGWSWVNVNDKLNAFVAGDQAHPQSEHITTVLELL 732

Query: 586 IRHMNETAYEPDIDCLIHDLE 606
             ++ +   E  I  L  D+E
Sbjct: 733 SANIGDARQE--IRSLNDDVE 751



 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 130/445 (29%), Positives = 239/445 (53%), Gaps = 4/445 (0%)

Query: 53  IKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM-VRNEVNPN 111
           +K    +G + ++R +FD+M  RD +SWT +IAGY + +   +A  +F  M V+  +  +
Sbjct: 97  LKQLVKQGQLCKSRYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVQPGLQRD 156

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
            F +S  LKAC    ++    L+HG ++K GL  S++V ++L+D+Y          R VF
Sbjct: 157 QFMISVALKACGLGVNICFGELLHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCR-VF 215

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
             M  +N VSWT +I G  H+G     L  F EM +  V  + ++F+IA++A A +  + 
Sbjct: 216 KKMTKRNVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLH 275

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            GK IH   IK GF  +  V+N++  MY +        + F++M   D+++W T+I  Y 
Sbjct: 276 HGKAIHTQTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITTYV 335

Query: 292 KSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           + G  E  +  F +M+    SPN +TF ++I+ACA LA    G+Q+H  ++R GL   L+
Sbjct: 336 QKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQIHGHVLRLGLVDALS 395

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           +AN+++ +Y+K G +  +  +F  ++ +D+++W++++  Y   G+ KEA +    M + G
Sbjct: 396 VANSIVTLYSKSGLLKSASLVFHGITRKDIISWSTIIAVYSQGGYAKEAFDYLSWMRREG 455

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470
            +P+     +VL+ C    L+++G +    +    ++    ++  ++ +  + G V+EA 
Sbjct: 456 PKPNEFALSSVLSVCGSMALLEQGKQVHAHVLCIGIDHEAMVHSALISMYSKCGSVEEAS 515

Query: 471 ELIKSMPFKPDESVWGPLLGACKEH 495
           ++   M      S W  ++    EH
Sbjct: 516 KIFNGMKINNIIS-WTAMINGYAEH 539



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 103/388 (26%), Positives = 181/388 (46%), Gaps = 42/388 (10%)

Query: 36  SDPPLIPKGPSILATNLIKSYFDE---------------GLIEEARTLFDEMPERDVVSW 80
           +D  L+  G +I  T  IK  FDE               G  +    LF++M   DVVSW
Sbjct: 269 ADSSLLHHGKAI-HTQTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSW 327

Query: 81  TVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIK 140
           T +I  Y        A   F  M ++ V+PN +T ++V+ AC  +        +HG  ++
Sbjct: 328 TTLITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQIHGHVLR 387

Query: 141 EGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLG 200
            GL  ++ V NS++ +Y+   + + +A LVF+ +  K+ +SW+T+I  Y+  G       
Sbjct: 388 LGLVDALSVANSIVTLYSKSGL-LKSASLVFHGITRKDIISWSTIIAVYSQGGYAKEAFD 446

Query: 201 VFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYC 260
               M  EG + N ++ S  +  C S   +  GK +HA V+  G      V ++++ MY 
Sbjct: 447 YLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHVLCIGIDHEAMVHSALISMYS 506

Query: 261 RFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTS 319
           +   + +A++ F+ M   ++I+W  +I GY + G S E +N+F K+ S    P+  TF  
Sbjct: 507 KCGSVEEASKIFNGMKINNIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVTFIG 566

Query: 320 IIAACATLAALSCGQQVHAGIVRRGLDGNLALAN------------ALIDMYAKCGNISD 367
           ++ AC+           HAG+V  G    + + N             +ID+  + G +S+
Sbjct: 567 VLTACS-----------HAGMVDLGFYYFMLMTNEYQISPSKEHYGCIIDLLCRAGRLSE 615

Query: 368 SQKIFSEMS-DRDLVTWTSMMIGYGAHG 394
           ++ +   M    D V W++++     HG
Sbjct: 616 AEHMIRSMPCYTDDVVWSTLLRSCRVHG 643



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 3/244 (1%)

Query: 248 NLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMK 306
           N+  +NS L    +   L  +   FD+MT +D I+W T+IAGY   S S E L +FS M 
Sbjct: 89  NMLELNSELKQLVKQGQLCKSRYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMW 148

Query: 307 SER-FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNI 365
            +     + F  +  + AC     +  G+ +H   V+ GL  ++ +++ALIDMY K G I
Sbjct: 149 VQPGLQRDQFMISVALKACGLGVNICFGELLHGFSVKSGLINSVFVSSALIDMYMKVGKI 208

Query: 366 SDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTAC 425
               ++F +M+ R++V+WT+++ G    G+  EA+  F EM  S V  D   F   L A 
Sbjct: 209 EQGCRVFKKMTKRNVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKAS 268

Query: 426 SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVW 485
           + + L+  G            + +  +   +  +  + G+      L + M   PD   W
Sbjct: 269 ADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKM-PDVVSW 327

Query: 486 GPLL 489
             L+
Sbjct: 328 TTLI 331


>gi|6723387|emb|CAB66396.1| putative protein [Arabidopsis thaliana]
          Length = 1113

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/553 (38%), Positives = 329/553 (59%), Gaps = 8/553 (1%)

Query: 59  EGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSV 118
           E   E A  +FD+M E +VV+WT+MI          +A   F++MV +    + FTLSSV
Sbjct: 216 ENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSV 275

Query: 119 LKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI--SMDNARLVFNDMKW 176
             AC  +++LS    +H  AI+ GL     VE SL+D+YA C    S+D+ R VF+ M+ 
Sbjct: 276 FSACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMED 333

Query: 177 KNDVSWTTLITGYAHSGN-GYGGLGVFKEMLLEG-VEMNPYSFSIAVRACASTGWVSFGK 234
            + +SWT LITGY  + N     + +F EM+ +G VE N ++FS A +AC +      GK
Sbjct: 334 HSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGK 393

Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG 294
            +     K G  SN  V NS++ M+ + D + DA + F+ ++EK+L+++NT + G  ++ 
Sbjct: 394 QVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNL 453

Query: 295 SSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353
           + E    + S++       + FTF S+++  A + ++  G+Q+H+ +V+ GL  N  + N
Sbjct: 454 NFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCN 513

Query: 354 ALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP 413
           ALI MY+KCG+I  + ++F+ M +R++++WTSM+ G+  HG     +E F++M++ GV+P
Sbjct: 514 ALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKP 573

Query: 414 DRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
           + + ++A+L+ACSH GLV EG ++F SM  D+ + P  E Y C+VDLL RAG + +A+E 
Sbjct: 574 NEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEF 633

Query: 473 IKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKW 532
           I +MPF+ D  VW   LGAC+ H    LGKLAA ++L+L PN    YI LSNIYA  GKW
Sbjct: 634 INTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKW 693

Query: 533 EEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNET 592
           EE  + R+ M+     KE G SWIEV DK+  F   D    +   +Y  L+ LI  +   
Sbjct: 694 EESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRC 753

Query: 593 AYEPDIDCLIHDL 605
            Y PD D ++H L
Sbjct: 754 GYVPDTDLVLHKL 766



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 137/497 (27%), Positives = 247/497 (49%), Gaps = 29/497 (5%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMP---ERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           S+L  +LI  Y   G   +A  +F+ M    +RDVVSW+ M+A Y +      A  VFVE
Sbjct: 97  SVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVE 156

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG-LEGSIYVENSLMDVYATCC 161
            +   + PN +  ++V++AC     +    +  G  +K G  E  + V  SL+D++    
Sbjct: 157 FLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGE 216

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
            S +NA  VF+ M   N V+WT +IT     G     +  F +M+L G E + ++ S   
Sbjct: 217 NSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVF 276

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMY--CRFD-CLSDANQYFDEMTEK 278
            ACA    +S GK +H+  I+ G   +  V  S++DMY  C  D  + D  + FD M + 
Sbjct: 277 SACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDH 334

Query: 279 DLITWNTIIAGYEKSG--SSECLNMFSKMKSE-RFSPNCFTFTSIIAACATLAALSCGQQ 335
            +++W  +I GY K+   ++E +N+FS+M ++    PN FTF+S   AC  L+    G+Q
Sbjct: 335 SVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQ 394

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
           V     +RGL  N ++AN++I M+ K   + D+Q+ F  +S+++LV++ + + G   + +
Sbjct: 395 VLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLN 454

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455
            ++A +L  E+ +  +      F ++L+  ++ G + +G +    +    ++ N+ +   
Sbjct: 455 FEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNA 514

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD----- 510
           ++ +  + G +  A  +   M  +   S W  ++    +H         A+RVL+     
Sbjct: 515 LISMYSKCGSIDTASRVFNFMENRNVIS-WTSMITGFAKHGF-------AIRVLETFNQM 566

Query: 511 ----LKPNMMGTYIILS 523
               +KPN +    ILS
Sbjct: 567 IEEGVKPNEVTYVAILS 583



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 120/415 (28%), Positives = 214/415 (51%), Gaps = 19/415 (4%)

Query: 103 MVRNEVNP-NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
           M R+ + P ++ T SS+LK+C   +      LVH   I+  +E    + NSL+ +Y+   
Sbjct: 52  MARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSK-- 109

Query: 162 ISMDNARL--VFNDMKW---KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYS 216
            S D+A+   VF  M+    ++ VSW+ ++  Y ++G     + VF E L  G+  N Y 
Sbjct: 110 -SGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYC 168

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHG-FGSNLPVMNSILDMYCRFD-CLSDANQYFDE 274
           ++  +RAC+++ +V  G++    ++K G F S++ V  S++DM+ + +    +A + FD+
Sbjct: 169 YTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDK 228

Query: 275 MTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG 333
           M+E +++TW  +I    + G   E +  F  M    F  + FT +S+ +ACA L  LS G
Sbjct: 229 MSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLG 288

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKC---GNISDSQKIFSEMSDRDLVTWTSMMIGY 390
           +Q+H+  +R GL  ++    +L+DMYAKC   G++ D +K+F  M D  +++WT+++ GY
Sbjct: 289 KQLHSWAIRSGLVDDVEC--SLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGY 346

Query: 391 GAHGH-GKEAIELFDEMVKSG-VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP 448
             + +   EAI LF EM+  G V P+   F +   AC +      G +         +  
Sbjct: 347 MKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLAS 406

Query: 449 NKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKL 503
           N  +   V+ +  ++ R+++A    +S+  K   S    L G C+        KL
Sbjct: 407 NSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKL 461



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 130/250 (52%), Gaps = 7/250 (2%)

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVE-MNPYSFSIAVRACASTGWVSFGKLIHAAVIKH 243
           LI  + ++G+  G +     M  +G+  M+  +FS  +++C        GKL+HA +I+ 
Sbjct: 32  LILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEF 91

Query: 244 GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT---EKDLITWNTIIAGYEKSGSS-ECL 299
               +  + NS++ +Y +    + A   F+ M    ++D+++W+ ++A Y  +G   + +
Sbjct: 92  DIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAI 151

Query: 300 NMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG-LDGNLALANALIDM 358
            +F +       PN + +T++I AC+    +  G+     +++ G  + ++ +  +LIDM
Sbjct: 152 KVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDM 211

Query: 359 YAKCGN-ISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIV 417
           + K  N   ++ K+F +MS+ ++VTWT M+      G  +EAI  F +MV SG   D+  
Sbjct: 212 FVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFT 271

Query: 418 FMAVLTACSH 427
             +V +AC+ 
Sbjct: 272 LSSVFSACAE 281



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 99/241 (41%), Gaps = 29/241 (12%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y   G I+ A  +F+ M  R+V+SWT MI G+       +    F +M+   V PN
Sbjct: 515 LISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPN 574

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLE--GSIYVENSL---MDVYATCCIS--- 163
             T  ++L AC            H   + EG     S+Y ++ +   M+ YA C +    
Sbjct: 575 EVTYVAILSACS-----------HVGLVSEGWRHFNSMYEDHKIKPKMEHYA-CMVDLLC 622

Query: 164 ----MDNARLVFNDMKWKNDV-SWTTLITG-YAHSGNGYGGLGVFKEMLLEGVEMNPYSF 217
               + +A    N M ++ DV  W T +     HS    G L   K + L+  E   Y  
Sbjct: 623 RAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQ 682

Query: 218 SIAVRACASTGWVSF---GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE 274
              + ACA     S     K+    ++K G  S + V + I   Y       +A+Q +DE
Sbjct: 683 LSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDE 742

Query: 275 M 275
           +
Sbjct: 743 L 743


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/560 (37%), Positives = 334/560 (59%), Gaps = 3/560 (0%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108
           A  L+  Y   G ++ A  +F++MP+ DVVSW  +I+G       ++A  + ++M  + +
Sbjct: 147 ANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGL 206

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
            PN F LSS+LKAC G  +      +HG  IK   +   Y+   L+D+YA     +D+A 
Sbjct: 207 VPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHF-LDDAM 265

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            VF+ M  ++ + W  LI+G +H G       +F  +  EG+ +N  + +  +++ AS  
Sbjct: 266 KVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLE 325

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
             S  + +HA   K GF  +  V+N ++D Y +  CLSDA + F+E +  D+I   ++I 
Sbjct: 326 AASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMIT 385

Query: 289 GYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
              +    E  + +F +M  +   P+ F  +S++ ACA+L+A   G+QVHA +++R    
Sbjct: 386 ALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMS 445

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           +    NAL+  YAKCG+I D++  FS + +R +V+W++M+ G   HGHGK A+ELF  MV
Sbjct: 446 DAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMV 505

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRV 466
             G+ P+ I   +VL AC+HAGLVDE  +YF SM + + ++  +E Y C++DLLGRAG++
Sbjct: 506 DEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKL 565

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            +A EL+ SMPF+ + SVWG LLGA + H+ P LGKLAA ++  L+P   GT+++L+N Y
Sbjct: 566 DDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTY 625

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           A+ G W E AK RK+M+    KKE  MSW+EV+DKV  FI  DK    T+ +Y  L+ L 
Sbjct: 626 ASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELG 685

Query: 587 RHMNETAYEPDIDCLIHDLE 606
             M++  Y P++D  +HDL+
Sbjct: 686 DLMSKAGYIPNVDVDLHDLD 705



 Score =  222 bits (565), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 134/451 (29%), Positives = 228/451 (50%), Gaps = 4/451 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEM-PERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
            +A  L+  Y   G +++AR +FDE   ER+ VSW  +++ Y   +    A  VF EMV 
Sbjct: 43  FVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVW 102

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           + + P  F  S V+ AC G +++     VH M ++ G E  ++  N+L+D+Y      +D
Sbjct: 103 SGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMG-RVD 161

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A ++F  M   + VSW  LI+G   +G+ +  + +  +M   G+  N +  S  ++ACA
Sbjct: 162 IASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACA 221

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
             G    G+ IH  +IK    S+  +   ++DMY +   L DA + FD M+ +DLI WN 
Sbjct: 222 GAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNA 281

Query: 286 IIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I+G    G   E  ++F  ++ E    N  T  +++ + A+L A S  +QVHA   + G
Sbjct: 282 LISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIG 341

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
              +  + N LID Y KC  +SD+ ++F E S  D++  TSM+       HG+ AI+LF 
Sbjct: 342 FIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFM 401

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
           EM++ G+ PD  V  ++L AC+     ++G +    +       +      +V    + G
Sbjct: 402 EMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCG 461

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            +++A     S+P +   S W  ++G   +H
Sbjct: 462 SIEDAELAFSSLPERGVVS-WSAMIGGLAQH 491



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 98/318 (30%), Positives = 167/318 (52%), Gaps = 6/318 (1%)

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           N F L  VLK     +     A VH MA+  G    ++V N+L+ +Y      MD+AR V
Sbjct: 9   NEFALPVVLKCVPDAQL---GAQVHAMAMATGFGSDVFVANALVAMYGGFGF-MDDARRV 64

Query: 171 FNDM-KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           F++    +N VSW  L++ Y  +      + VF EM+  G++   + FS  V AC  +  
Sbjct: 65  FDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRN 124

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           +  G+ +HA V++ G+  ++   N+++DMY +   +  A+  F++M + D+++WN +I+G
Sbjct: 125 IDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISG 184

Query: 290 YEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
              +G     + +  +MKS    PN F  +SI+ ACA   A   G+Q+H  +++   D +
Sbjct: 185 CVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSD 244

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
             +   L+DMYAK   + D+ K+F  MS RDL+ W +++ G    G   EA  +F  + K
Sbjct: 245 DYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRK 304

Query: 409 SGVRPDRIVFMAVLTACS 426
            G+  +R    AVL + +
Sbjct: 305 EGLGVNRTTLAAVLKSTA 322



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/418 (27%), Positives = 198/418 (47%), Gaps = 37/418 (8%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +   L+  Y     +++A  +FD M  RD++ W  +I+G +    H++A+++F  + +  
Sbjct: 247 IGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEG 306

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           +  N  TL++VLK+   +++ S    VH +A K G     +V N L+D Y  C    D  
Sbjct: 307 LGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAI 366

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R VF +    + ++ T++IT  +   +G G + +F EML +G+E +P+  S  + ACAS 
Sbjct: 367 R-VFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASL 425

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
                GK +HA +IK  F S+    N+++  Y +   + DA   F  + E+ +++W+ +I
Sbjct: 426 SAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMI 485

Query: 288 AGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR--- 343
            G  + G  +  L +F +M  E  +PN  T TS++ AC            HAG+V     
Sbjct: 486 GGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACN-----------HAGLVDEAKR 534

Query: 344 ---------GLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAH 393
                    G+D      + +ID+  + G + D+ ++ + M    +   W +++     H
Sbjct: 535 YFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVH 594

Query: 394 GH---GKEAIE--LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV 446
                GK A E     E  KSG      V +A   A S  G+ +E  K  K M D N+
Sbjct: 595 KDPELGKLAAEKLFILEPEKSGTH----VLLANTYASS--GMWNEVAKVRKLMKDSNI 646



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 153/290 (52%), Gaps = 6/290 (2%)

Query: 205 MLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264
           M  EGV  N ++  + ++          G  +HA  +  GFGS++ V N+++ MY  F  
Sbjct: 1   MRAEGVCCNEFALPVVLKCVPDA---QLGAQVHAMAMATGFGSDVFVANALVAMYGGFGF 57

Query: 265 LSDANQYFDEM-TEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIA 322
           + DA + FDE  +E++ ++WN +++ Y K+    + + +F +M      P  F F+ ++ 
Sbjct: 58  MDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVN 117

Query: 323 ACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVT 382
           AC     +  G+QVHA +VR G + ++  ANAL+DMY K G +  +  IF +M D D+V+
Sbjct: 118 ACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVS 177

Query: 383 WTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN 442
           W +++ G   +GH   AIEL  +M  SG+ P+  +  ++L AC+ AG  D G +    M 
Sbjct: 178 WNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMI 237

Query: 443 DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGAC 492
             N + +  I   +VD+  +   + +A ++   M  + D  +W  L+  C
Sbjct: 238 KANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHR-DLILWNALISGC 286


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/560 (37%), Positives = 334/560 (59%), Gaps = 3/560 (0%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108
           A  L+  Y   G ++ A  +F++MP+ DVVSW  +I+G       ++A  + ++M  + +
Sbjct: 240 ANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGL 299

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
            PN F LSS+LKAC G  +      +HG  IK   +   Y+   L+D+YA     +D+A 
Sbjct: 300 VPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHF-LDDAM 358

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            VF+ M  ++ + W  LI+G +H G       +F  +  EG+ +N  + +  +++ AS  
Sbjct: 359 KVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLE 418

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
             S  + +HA   K GF  +  V+N ++D Y +  CLSDA + F+E +  D+I   ++I 
Sbjct: 419 AASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMIT 478

Query: 289 GYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
              +    E  + +F +M  +   P+ F  +S++ ACA+L+A   G+QVHA +++R    
Sbjct: 479 ALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMS 538

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           +    NAL+  YAKCG+I D++  FS + +R +V+W++M+ G   HGHGK A+ELF  MV
Sbjct: 539 DAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMV 598

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRV 466
             G+ P+ I   +VL AC+HAGLVDE  +YF SM + + ++  +E Y C++DLLGRAG++
Sbjct: 599 DEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKL 658

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            +A EL+ SMPF+ + SVWG LLGA + H+ P LGKLAA ++  L+P   GT+++L+N Y
Sbjct: 659 DDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTY 718

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           A+ G W E AK RK+M+    KKE  MSW+EV+DKV  FI  DK    T+ +Y  L+ L 
Sbjct: 719 ASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELG 778

Query: 587 RHMNETAYEPDIDCLIHDLE 606
             M++  Y P++D  +HDL+
Sbjct: 779 DLMSKAGYIPNVDVDLHDLD 798



 Score =  221 bits (564), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 134/451 (29%), Positives = 228/451 (50%), Gaps = 4/451 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEM-PERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
            +A  L+  Y   G +++AR +FDE   ER+ VSW  +++ Y   +    A  VF EMV 
Sbjct: 136 FVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVW 195

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           + + P  F  S V+ AC G +++     VH M ++ G E  ++  N+L+D+Y      +D
Sbjct: 196 SGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMG-RVD 254

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A ++F  M   + VSW  LI+G   +G+ +  + +  +M   G+  N +  S  ++ACA
Sbjct: 255 IASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACA 314

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
             G    G+ IH  +IK    S+  +   ++DMY +   L DA + FD M+ +DLI WN 
Sbjct: 315 GAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNA 374

Query: 286 IIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I+G    G   E  ++F  ++ E    N  T  +++ + A+L A S  +QVHA   + G
Sbjct: 375 LISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIG 434

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
              +  + N LID Y KC  +SD+ ++F E S  D++  TSM+       HG+ AI+LF 
Sbjct: 435 FIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFM 494

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
           EM++ G+ PD  V  ++L AC+     ++G +    +       +      +V    + G
Sbjct: 495 EMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCG 554

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            +++A     S+P +   S W  ++G   +H
Sbjct: 555 SIEDAELAFSSLPERGVVS-WSAMIGGLAQH 584



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 112/362 (30%), Positives = 188/362 (51%), Gaps = 6/362 (1%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           AR +FDE+P+   VSW+ ++  Y++      A   F  M    V  N F L  VLK    
Sbjct: 56  ARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD 115

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM-KWKNDVSWT 183
            +     A VH MA+  G    ++V N+L+ +Y      MD+AR VF++    +N VSW 
Sbjct: 116 AQL---GAQVHAMAMATGFGSDVFVANALVAMYGGFGF-MDDARRVFDEAGSERNAVSWN 171

Query: 184 TLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH 243
            L++ Y  +      + VF EM+  G++   + FS  V AC  +  +  G+ +HA V++ 
Sbjct: 172 GLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRM 231

Query: 244 GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMF 302
           G+  ++   N+++DMY +   +  A+  F++M + D+++WN +I+G   +G     + + 
Sbjct: 232 GYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELL 291

Query: 303 SKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362
            +MKS    PN F  +SI+ ACA   A   G+Q+H  +++   D +  +   L+DMYAK 
Sbjct: 292 LQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKN 351

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
             + D+ K+F  MS RDL+ W +++ G    G   EA  +F  + K G+  +R    AVL
Sbjct: 352 HFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVL 411

Query: 423 TA 424
            +
Sbjct: 412 KS 413



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 114/387 (29%), Positives = 199/387 (51%), Gaps = 15/387 (3%)

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC---CISMDNA 167
           +A T+S  L      ++L   A +H   +K G   S+   N L+  Y+ C   C     A
Sbjct: 3   SAGTISQQLTRYAAAQALLPGAHLHANLLKSGFLASL--RNHLISFYSKCRRPCC----A 56

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R VF+++     VSW++L+T Y+++G     +  F  M  EGV  N ++  + ++     
Sbjct: 57  RRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDA 116

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLITWNTI 286
                G  +HA  +  GFGS++ V N+++ MY  F  + DA + FDE  +E++ ++WN +
Sbjct: 117 ---QLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGL 173

Query: 287 IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           ++ Y K+    + + +F +M      P  F F+ ++ AC     +  G+QVHA +VR G 
Sbjct: 174 MSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGY 233

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           + ++  ANAL+DMY K G +  +  IF +M D D+V+W +++ G   +GH   AIEL  +
Sbjct: 234 EKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQ 293

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M  SG+ P+  +  ++L AC+ AG  D G +    M   N + +  I   +VD+  +   
Sbjct: 294 MKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHF 353

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGAC 492
           + +A ++   M  + D  +W  L+  C
Sbjct: 354 LDDAMKVFDWMSHR-DLILWNALISGC 379



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 114/418 (27%), Positives = 198/418 (47%), Gaps = 37/418 (8%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +   L+  Y     +++A  +FD M  RD++ W  +I+G +    H++A+++F  + +  
Sbjct: 340 IGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEG 399

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           +  N  TL++VLK+   +++ S    VH +A K G     +V N L+D Y  C    D  
Sbjct: 400 LGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAI 459

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R VF +    + ++ T++IT  +   +G G + +F EML +G+E +P+  S  + ACAS 
Sbjct: 460 R-VFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASL 518

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
                GK +HA +IK  F S+    N+++  Y +   + DA   F  + E+ +++W+ +I
Sbjct: 519 SAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMI 578

Query: 288 AGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR--- 343
            G  + G  +  L +F +M  E  +PN  T TS++ AC            HAG+V     
Sbjct: 579 GGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACN-----------HAGLVDEAKR 627

Query: 344 ---------GLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAH 393
                    G+D      + +ID+  + G + D+ ++ + M    +   W +++     H
Sbjct: 628 YFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVH 687

Query: 394 GH---GKEAIE--LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV 446
                GK A E     E  KSG      V +A   A S  G+ +E  K  K M D N+
Sbjct: 688 KDPELGKLAAEKLFILEPEKSGTH----VLLANTYASS--GMWNEVAKVRKLMKDSNI 739


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/564 (37%), Positives = 333/564 (59%), Gaps = 4/564 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L   L+  Y   G + +AR +FD + +R++VSWT MI  + + N + +A+  +  M    
Sbjct: 84  LENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAG 143

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
             P+  T  S+L A    + L     VH   ++ GLE    V  SL+ +YA C   +  A
Sbjct: 144 CKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCG-DISKA 202

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R++F+ +  KN V+WT LI GYA  G     L + + M    V  N  +F+  ++ C + 
Sbjct: 203 RVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTP 262

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  GK +H  +I+ G+G  L V+NS++ MYC+   L +A + F ++  +D++TW  ++
Sbjct: 263 AALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMV 322

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            GY + G   E +N+F +M+ +   P+  TFTS++ +C++ A L  G+++H  +V  G +
Sbjct: 323 TGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYN 382

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA-HGHGKEAIELFDE 405
            ++ L +AL+ MYAKCG++ D+  +F++MS+R++V WT+++ G  A HG  +EA+E FD+
Sbjct: 383 LDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQ 442

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAG 464
           M K G++PD++ F +VL+AC+H GLV+EG K+F+SM  DY + P  E Y C VDLLGRAG
Sbjct: 443 MKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAG 502

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
            ++EA  +I SMPF P  SVWG LL AC+ H     G+ AA  VL L P+  G Y+ LS+
Sbjct: 503 HLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSS 562

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           IYAA G++E+  K R++M      KE G SWIEV  KV  F   DK    ++ +Y  L  
Sbjct: 563 IYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPESEQIYVELGK 622

Query: 585 LIRHMNETAYEPDIDCLIHDLEGE 608
           L   + E  Y PD   ++HD++ E
Sbjct: 623 LTEQIKEMGYVPDTRFVLHDVDEE 646



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 116/379 (30%), Positives = 203/379 (53%), Gaps = 2/379 (0%)

Query: 118 VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK 177
           +L+ C  ++SL     VH   +K G++ + Y+EN+L+ +YA C  S+ +AR VF+ ++ +
Sbjct: 53  LLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCG-SLTDARRVFDSIRDR 111

Query: 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIH 237
           N VSWT +I  +            ++ M L G + +  +F   + A  +   +  G+ +H
Sbjct: 112 NIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVH 171

Query: 238 AAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE 297
             +++ G      V  S++ MY +   +S A   FD + EK+++TW  +IAGY + G  +
Sbjct: 172 MEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVD 231

Query: 298 -CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALI 356
             L +   M+    +PN  TF SI+  C T AAL  G++VH  I++ G    L + N+LI
Sbjct: 232 VALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLI 291

Query: 357 DMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI 416
            MY KCG + +++K+FS++  RD+VTWT+M+ GY   G   EAI LF  M + G++PD++
Sbjct: 292 TMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKM 351

Query: 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
            F +VLT+CS    + EG +  + +     N +  +   +V +  + G + +A  +   M
Sbjct: 352 TFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQM 411

Query: 477 PFKPDESVWGPLLGACKEH 495
             +   +    + G C +H
Sbjct: 412 SERNVVAWTAIITGCCAQH 430



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 153/299 (51%), Gaps = 2/299 (0%)

Query: 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251
           +G     LG+   M+L+G  +    F   ++ CA    +  G+ +HAA++K G   N  +
Sbjct: 25  TGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYL 84

Query: 252 MNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERF 310
            N++L MY +   L+DA + FD + ++++++W  +I  +     + E    +  MK    
Sbjct: 85  ENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGC 144

Query: 311 SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQK 370
            P+  TF S++ A      L  GQ+VH  IV  GL+    +  +L+ MYAKCG+IS ++ 
Sbjct: 145 KPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARV 204

Query: 371 IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           IF  + ++++VTWT ++ GY   G    A+EL + M ++ V P++I F ++L  C+    
Sbjct: 205 IFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAA 264

Query: 431 VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           ++ G K  + +          +   ++ +  + G ++EA +L   +P + D   W  ++
Sbjct: 265 LEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHR-DVVTWTAMV 322


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/553 (38%), Positives = 329/553 (59%), Gaps = 8/553 (1%)

Query: 59  EGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSV 118
           E   E A  +FD+M E +VV+WT+MI          +A   F++MV +    + FTLSSV
Sbjct: 216 ENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSV 275

Query: 119 LKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI--SMDNARLVFNDMKW 176
             AC  +++LS    +H  AI+ GL     VE SL+D+YA C    S+D+ R VF+ M+ 
Sbjct: 276 FSACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMED 333

Query: 177 KNDVSWTTLITGYAHSGN-GYGGLGVFKEMLLEG-VEMNPYSFSIAVRACASTGWVSFGK 234
            + +SWT LITGY  + N     + +F EM+ +G VE N ++FS A +AC +      GK
Sbjct: 334 HSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGK 393

Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG 294
            +     K G  SN  V NS++ M+ + D + DA + F+ ++EK+L+++NT + G  ++ 
Sbjct: 394 QVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNL 453

Query: 295 SSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353
           + E    + S++       + FTF S+++  A + ++  G+Q+H+ +V+ GL  N  + N
Sbjct: 454 NFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCN 513

Query: 354 ALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP 413
           ALI MY+KCG+I  + ++F+ M +R++++WTSM+ G+  HG     +E F++M++ GV+P
Sbjct: 514 ALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKP 573

Query: 414 DRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
           + + ++A+L+ACSH GLV EG ++F SM  D+ + P  E Y C+VDLL RAG + +A+E 
Sbjct: 574 NEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEF 633

Query: 473 IKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKW 532
           I +MPF+ D  VW   LGAC+ H    LGKLAA ++L+L PN    YI LSNIYA  GKW
Sbjct: 634 INTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKW 693

Query: 533 EEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNET 592
           EE  + R+ M+     KE G SWIEV DK+  F   D    +   +Y  L+ LI  +   
Sbjct: 694 EESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRC 753

Query: 593 AYEPDIDCLIHDL 605
            Y PD D ++H L
Sbjct: 754 GYVPDTDLVLHKL 766



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 136/497 (27%), Positives = 247/497 (49%), Gaps = 29/497 (5%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMP---ERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           S+L  +LI  Y   G   +A  +F+ M    +RDVVSW+ M+A Y +      A  VFVE
Sbjct: 97  SVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVE 156

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG-LEGSIYVENSLMDVYATCC 161
            +   + PN +  ++V++AC     +    +  G  +K G  E  + V  SL+D++    
Sbjct: 157 FLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGE 216

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
            S +NA  VF+ M   N V+WT +IT     G     +  F +M+L G E + ++ S   
Sbjct: 217 NSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVF 276

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMY--CRFD-CLSDANQYFDEMTEK 278
            ACA    +S GK +H+  I+ G   ++    S++DMY  C  D  + D  + FD M + 
Sbjct: 277 SACAELENLSLGKQLHSWAIRSGLVDDVEC--SLVDMYAKCSADGSVDDCRKVFDRMEDH 334

Query: 279 DLITWNTIIAGYEKSG--SSECLNMFSKMKSE-RFSPNCFTFTSIIAACATLAALSCGQQ 335
            +++W  +I GY K+   ++E +N+FS+M ++    PN FTF+S   AC  L+    G+Q
Sbjct: 335 SVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQ 394

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
           V     +RGL  N ++AN++I M+ K   + D+Q+ F  +S+++LV++ + + G   + +
Sbjct: 395 VLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLN 454

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455
            ++A +L  E+ +  +      F ++L+  ++ G + +G +    +    ++ N+ +   
Sbjct: 455 FEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNA 514

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD----- 510
           ++ +  + G +  A  +   M  +   S W  ++    +H         A+RVL+     
Sbjct: 515 LISMYSKCGSIDTASRVFNFMENRNVIS-WTSMITGFAKHGF-------AIRVLETFNQM 566

Query: 511 ----LKPNMMGTYIILS 523
               +KPN +    ILS
Sbjct: 567 IEEGVKPNEVTYVAILS 583



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 120/415 (28%), Positives = 214/415 (51%), Gaps = 19/415 (4%)

Query: 103 MVRNEVNP-NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
           M R+ + P ++ T SS+LK+C   +      LVH   I+  +E    + NSL+ +Y+   
Sbjct: 52  MARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSK-- 109

Query: 162 ISMDNARL--VFNDMKW---KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYS 216
            S D+A+   VF  M+    ++ VSW+ ++  Y ++G     + VF E L  G+  N Y 
Sbjct: 110 -SGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYC 168

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHG-FGSNLPVMNSILDMYCRFD-CLSDANQYFDE 274
           ++  +RAC+++ +V  G++    ++K G F S++ V  S++DM+ + +    +A + FD+
Sbjct: 169 YTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDK 228

Query: 275 MTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG 333
           M+E +++TW  +I    + G   E +  F  M    F  + FT +S+ +ACA L  LS G
Sbjct: 229 MSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLG 288

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKC---GNISDSQKIFSEMSDRDLVTWTSMMIGY 390
           +Q+H+  +R GL  ++    +L+DMYAKC   G++ D +K+F  M D  +++WT+++ GY
Sbjct: 289 KQLHSWAIRSGLVDDVEC--SLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGY 346

Query: 391 GAHGH-GKEAIELFDEMVKSG-VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP 448
             + +   EAI LF EM+  G V P+   F +   AC +      G +         +  
Sbjct: 347 MKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLAS 406

Query: 449 NKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKL 503
           N  +   V+ +  ++ R+++A    +S+  K   S    L G C+        KL
Sbjct: 407 NSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKL 461



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 130/249 (52%), Gaps = 7/249 (2%)

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVE-MNPYSFSIAVRACASTGWVSFGKLIHAAVIKH 243
           LI  + ++G+  G +     M  +G+  M+  +FS  +++C        GKL+HA +I+ 
Sbjct: 32  LILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEF 91

Query: 244 GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT---EKDLITWNTIIAGYEKSGSS-ECL 299
               +  + NS++ +Y +    + A   F+ M    ++D+++W+ ++A Y  +G   + +
Sbjct: 92  DIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAI 151

Query: 300 NMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG-LDGNLALANALIDM 358
            +F +       PN + +T++I AC+    +  G+     +++ G  + ++ +  +LIDM
Sbjct: 152 KVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDM 211

Query: 359 YAKCGN-ISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIV 417
           + K  N   ++ K+F +MS+ ++VTWT M+      G  +EAI  F +MV SG   D+  
Sbjct: 212 FVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFT 271

Query: 418 FMAVLTACS 426
             +V +AC+
Sbjct: 272 LSSVFSACA 280



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 99/241 (41%), Gaps = 29/241 (12%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y   G I+ A  +F+ M  R+V+SWT MI G+       +    F +M+   V PN
Sbjct: 515 LISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPN 574

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLE--GSIYVENSL---MDVYATCCIS--- 163
             T  ++L AC            H   + EG     S+Y ++ +   M+ YA C +    
Sbjct: 575 EVTYVAILSACS-----------HVGLVSEGWRHFNSMYEDHKIKPKMEHYA-CMVDLLC 622

Query: 164 ----MDNARLVFNDMKWKNDV-SWTTLITG-YAHSGNGYGGLGVFKEMLLEGVEMNPYSF 217
               + +A    N M ++ DV  W T +     HS    G L   K + L+  E   Y  
Sbjct: 623 RAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQ 682

Query: 218 SIAVRACASTGWVSF---GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE 274
              + ACA     S     K+    ++K G  S + V + I   Y       +A+Q +DE
Sbjct: 683 LSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDE 742

Query: 275 M 275
           +
Sbjct: 743 L 743


>gi|449449950|ref|XP_004142727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Cucumis sativus]
          Length = 712

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/545 (39%), Positives = 324/545 (59%), Gaps = 3/545 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + + L+  Y   G I  +  +FDEMP R+ V+WT +I G             F  M R+
Sbjct: 152 FVGSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRS 211

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           +V  +++  +  LKA     +L++   +H   +K+G + + +V NSL  +Y  C   +D 
Sbjct: 212 KVEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCG-KLDY 270

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
               F  M+  + VSWTT++T Y   G    GL  FK M    V  N Y+FS  +  CA+
Sbjct: 271 GLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCAN 330

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              + +G+ +HA V+  GF + L V NSI+ +Y +   L+  ++ F  M  +D+ITW+TI
Sbjct: 331 FARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTI 390

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           IA Y + G   E     S+M+SE   PN F   S+++ C ++A L  G+Q+HA ++  GL
Sbjct: 391 IAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGL 450

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           +    + +ALI MYAKCG+I+++ KIF +    D+++WT+M+ GY  HGH +EAIELF+ 
Sbjct: 451 EQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFEN 510

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAG 464
           + K G+RPD + F+ VLTACSHAG+VD G  YF SM+ DY++ P+KE YGC++DLL RAG
Sbjct: 511 IQKVGLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKEHYGCMIDLLCRAG 570

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           R+ +A  LI+SMP + D+ VW  LL AC+ H   + G+ AA  VL L PN  GT+I L+N
Sbjct: 571 RLHDAETLIRSMPIQWDDVVWSTLLRACRIHGDVDCGQRAAAEVLKLDPNCAGTHITLAN 630

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           I+AA+GKW+E A  R +M+  G  KE G S ++V+D V  F++ D+     + +Y +LE 
Sbjct: 631 IFAAKGKWKEAANIRMLMKSKGVVKEPGWSSVKVKDSVFAFVSGDRSHPQGEDIYNILEE 690

Query: 585 LIRHM 589
           L   M
Sbjct: 691 LASGM 695



 Score =  254 bits (650), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 138/450 (30%), Positives = 247/450 (54%), Gaps = 6/450 (1%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM-VRNE 107
           A N +K       +++AR LFD++P+RD VSWT +I+GY + +  ++A  +F +M +++E
Sbjct: 52  ANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSE 111

Query: 108 VNPNAFTLSSVLKACK-GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           +  + F LS  LK C  G+  L    L HG ++K GL  S++V ++L+D+Y      +  
Sbjct: 112 LRIDPFLLSLGLKTCGLGLNYLYGTNL-HGFSVKTGLVNSVFVGSALLDMYMKIG-EIGR 169

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           +  VF++M  +N V+WT +ITG   +G    GL  F  M    VE + Y+++IA++A A 
Sbjct: 170 SCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASAD 229

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
           +G ++ G+ IH   +K GF  N  V NS+  MY +   L      F +M   D+++W TI
Sbjct: 230 SGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTI 289

Query: 287 IAGYEKSGSSEC-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           +  Y + G  +C L  F +M++    PN +TF+++I+ CA  A L  G+Q+HA ++  G 
Sbjct: 290 VTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGF 349

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
              L++AN+++ +Y+KCG ++   K+F  M  RD++TW++++  Y   G+G+EA E    
Sbjct: 350 VNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSR 409

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M   G +P+     +VL+ C    ++++G +    +    +     +   ++ +  + G 
Sbjct: 410 MRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGS 469

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           + EA ++     +K D   W  ++    EH
Sbjct: 470 IAEASKIFMD-SWKDDIISWTAMISGYAEH 498



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 178/364 (48%), Gaps = 5/364 (1%)

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG-VEMNPYSFSIAVR 222
           + +AR +F+ +  +++VSWT +I+GY +S +    L +F +M L+  + ++P+  S+ ++
Sbjct: 65  LKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLLSLGLK 124

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
            C       +G  +H   +K G  +++ V +++LDMY +   +  + + FDEM  ++ +T
Sbjct: 125 TCGLGLNYLYGTNLHGFSVKTGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAVT 184

Query: 283 WNTIIAGYEKSGSSEC-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           W  +I G  ++G SE  L  FS M   +   + + +   + A A   AL+ G+ +H   +
Sbjct: 185 WTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQTL 244

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           ++G D N  +AN+L  MY KCG +      F +M   D+V+WT+++  Y   G     ++
Sbjct: 245 KKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQ 304

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461
            F  M  S V P+   F AV++ C++   +  G +    +          +   ++ L  
Sbjct: 305 AFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYS 364

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKE--HRLPNLGKLAALRVLDLKPNMMGTY 519
           + G +    ++  SM F+ D   W  ++ A  +  +       L+ +R    KPN     
Sbjct: 365 KCGELASVSKVFCSMKFR-DIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALA 423

Query: 520 IILS 523
            +LS
Sbjct: 424 SVLS 427



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 168/363 (46%), Gaps = 26/363 (7%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S +A +L   Y   G ++     F +M   DVVSWT ++  Y      +     F  M  
Sbjct: 252 SFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRA 311

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           + V PN +T S+V+  C     L     +H   +  G   ++ V NS+M +Y+ C   + 
Sbjct: 312 SNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCG-ELA 370

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +   VF  MK+++ ++W+T+I  Y+  G G         M  EG + N ++ +  +  C 
Sbjct: 371 SVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCG 430

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           S   +  GK +HA V+  G      V ++++ MY +   +++A++ F +  + D+I+W  
Sbjct: 431 SMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTA 490

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I+GY + G S E + +F  ++     P+  TF  ++ AC+           HAG+V  G
Sbjct: 491 MISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACS-----------HAGMVDLG 539

Query: 345 L--------DGNLALAN----ALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYG 391
                    D ++  +      +ID+  + G + D++ +   M  + D V W++++    
Sbjct: 540 FYYFNSMSKDYHITPSKEHYGCMIDLLCRAGRLHDAETLIRSMPIQWDDVVWSTLLRACR 599

Query: 392 AHG 394
            HG
Sbjct: 600 IHG 602



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 110/233 (47%), Gaps = 6/233 (2%)

Query: 248 NLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMK 306
           +L   N+ L +  + + L DA   FD++ ++D ++W  II+GY   S SSE L +FSKM+
Sbjct: 48  DLAEANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMR 107

Query: 307 SE---RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG 363
            +   R  P  F  +  +  C        G  +H   V+ GL  ++ + +AL+DMY K G
Sbjct: 108 LQSELRIDP--FLLSLGLKTCGLGLNYLYGTNLHGFSVKTGLVNSVFVGSALLDMYMKIG 165

Query: 364 NISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLT 423
            I  S K+F EM  R+ VTWT+++ G    G+ +  +  F  M +S V  D   +   L 
Sbjct: 166 EIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALK 225

Query: 424 ACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
           A + +G ++ G            + N  +   +  +  + G++       + M
Sbjct: 226 ASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKM 278


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/563 (36%), Positives = 339/563 (60%), Gaps = 3/563 (0%)

Query: 48   LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
            LA  L+  Y   G I EA+ +F+    RD++SW  MIAG+     +  A+ +F+EM +  
Sbjct: 523  LANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEG 582

Query: 108  VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
            + P+  T +SVL  CK  ++L     +H + I+ GL+  + + N+L+++Y  C  S+ +A
Sbjct: 583  LEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCG-SLQDA 641

Query: 168  RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
              VF+ ++ +N +SWT +I G+A  G       +F +M  +G +    +FS  ++AC S+
Sbjct: 642  YEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSS 701

Query: 228  GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
              +  GK + A ++  G+  +  V N+++  Y +   ++DA + FD+M  +D+++WN +I
Sbjct: 702  ACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMI 761

Query: 288  AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            AGY ++G     L    +M+ +    N F+F SI+ AC++ +AL  G++VHA IV+R + 
Sbjct: 762  AGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQ 821

Query: 347  GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            G++ +  ALI MYAKCG++ ++Q++F   +++++VTW +M+  Y  HG   +A++ F+ M
Sbjct: 822  GDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCM 881

Query: 407  VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGR 465
             K G++PD   F ++L+AC+H+GLV EG + F S+ + + ++P  E YGC+V LLGRAGR
Sbjct: 882  DKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGR 941

Query: 466  VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
             +EA  LI  MPF PD +VW  LLGAC+ H    L + AA   L L       Y++LSN+
Sbjct: 942  FQEAETLINQMPFPPDAAVWETLLGACRIHGNVALAEHAANNALKLNARNPAVYVLLSNV 1001

Query: 526  YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
            YAA G+W++ AK R++M G G +KE G SWIEV + +  FIA D+    T  +Y  L+ L
Sbjct: 1002 YAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYEELKRL 1061

Query: 586  IRHMNETAYEPDIDCLIHDLEGE 608
               M    Y PD   ++H+L+ E
Sbjct: 1062 SLEMERAGYSPDTQYVLHNLDKE 1084



 Score =  241 bits (615), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 125/451 (27%), Positives = 246/451 (54%), Gaps = 3/451 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +  +LI  Y   G +  AR LF+ MP+RD++SW  +IAGY       +A  ++ +M    
Sbjct: 422 IGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEG 481

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V P   T   +L AC    + S+  ++H   ++ G++ + ++ N+LM++Y  C   M+ A
Sbjct: 482 VKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIME-A 540

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           + VF   + ++ +SW ++I G+A  G+      +F EM  EG+E +  +F+  +  C + 
Sbjct: 541 QNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNP 600

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  G+ IH  +I+ G   ++ + N++++MY R   L DA + F  +  +++++W  +I
Sbjct: 601 EALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMI 660

Query: 288 AGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            G+   G   +   +F +M+++ F P   TF+SI+ AC + A L  G++V A I+  G +
Sbjct: 661 GGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYE 720

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            +  + NALI  Y+K G+++D++K+F +M +RD+++W  M+ GY  +G G  A++   +M
Sbjct: 721 LDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQM 780

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
            + GV  ++  F+++L ACS    ++EG +    +    +  +  +   ++ +  + G +
Sbjct: 781 QEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSL 840

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
           +EA E+  +   K +   W  ++ A  +H L
Sbjct: 841 EEAQEVFDNFTEK-NVVTWNAMINAYAQHGL 870



 Score =  224 bits (572), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 148/558 (26%), Positives = 265/558 (47%), Gaps = 45/558 (8%)

Query: 62  IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121
           +  AR +F  +  RDVVS+  M+  Y       +   +F +M    + P+  T  ++L A
Sbjct: 234 LPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDA 293

Query: 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS 181
                 L     +H +A+ EGL   I V  +L  ++  C   +  A+        ++ V 
Sbjct: 294 FTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCG-DVAGAKQALEAFADRDVVV 352

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           +  LI   A  G+       + +M  +GV MN  ++   + AC+++  +  G+LIH+ + 
Sbjct: 353 YNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHIS 412

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLN 300
           + G  S++ + NS++ MY R   L  A + F+ M ++DLI+WN IIAGY  +    E + 
Sbjct: 413 EVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMK 472

Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360
           ++ +M+SE   P   TF  +++AC   +A S G+ +H  I+R G+  N  LANAL++MY 
Sbjct: 473 LYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYR 532

Query: 361 KCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420
           +CG+I ++Q +F     RD+++W SM+ G+  HG  + A +LF EM K G+ PD+I F +
Sbjct: 533 RCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFAS 592

Query: 421 VLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMP--- 477
           VL  C +   ++ G +    + +  +  +  +   ++++  R G +++AYE+  S+    
Sbjct: 593 VLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRN 652

Query: 478 -------------------------------FKPDESVWGPLLGACKEHRLPNLGKLAAL 506
                                          FKP +S +  +L AC      + GK    
Sbjct: 653 VMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIA 712

Query: 507 RVLDLKPNM-MGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGF 565
            +L+    +  G    L + Y+  G   +    RK+   M ++    MSW ++   + G+
Sbjct: 713 HILNSGYELDTGVGNALISAYSKSGSMTD---ARKVFDKMPNRDI--MSWNKM---IAGY 764

Query: 566 IANDKMGSHTQYVYGVLE 583
             N   G+  Q+ Y + E
Sbjct: 765 AQNGLGGTALQFAYQMQE 782



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 126/475 (26%), Positives = 240/475 (50%), Gaps = 6/475 (1%)

Query: 23  KQSLQSVKKSSIQSDPPLIPKGPSILATNL-IKSYFDEGLIEEARTLFDEMPERDVVSWT 81
           K+SL   K+   Q     +  GP I  +NL I  Y     + +A  +F +MP RDV+SW 
Sbjct: 95  KRSLAEAKRIHAQMVEAGV--GPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWN 152

Query: 82  VMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKE 141
            +I+ Y       +A+ +F EM      P+  T  S+L AC     L     +H   I+ 
Sbjct: 153 SLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEA 212

Query: 142 GLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGV 201
           G +    V+NSL+++Y   C  + +AR VF+ +  ++ VS+ T++  YA        +G+
Sbjct: 213 GYQRDPRVQNSLLNMYGK-CEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGL 271

Query: 202 FKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR 261
           F +M  EG+  +  ++   + A  +   +  GK IH   +  G  S++ V  ++  M+ R
Sbjct: 272 FGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVR 331

Query: 262 FDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSI 320
              ++ A Q  +   ++D++ +N +IA   + G   E    + +M+S+    N  T+ S+
Sbjct: 332 CGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSV 391

Query: 321 IAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDL 380
           + AC+T  AL  G+ +H+ I   G   ++ + N+LI MYA+CG++  ++++F+ M  RDL
Sbjct: 392 LNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDL 451

Query: 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS 440
           ++W +++ GY       EA++L+ +M   GV+P R+ F+ +L+AC+++    +G    + 
Sbjct: 452 ISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHED 511

Query: 441 MNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           +    +  N  +   ++++  R G + EA  + +    + D   W  ++    +H
Sbjct: 512 ILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRAR-DIISWNSMIAGHAQH 565



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 113/420 (26%), Positives = 221/420 (52%), Gaps = 7/420 (1%)

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           E N  A+    +++ C   +SL+ A  +H   ++ G+   I++ N L+++Y  C  S+ +
Sbjct: 79  ETNRAAYV--DLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKC-RSVSD 135

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  VF  M  ++ +SW +LI+ YA  G       +F+EM   G   +  ++   + AC S
Sbjct: 136 AHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCS 195

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              + +GK IH+ +I+ G+  +  V NS+L+MY + + L  A Q F  +  +D++++NT+
Sbjct: 196 PAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTM 255

Query: 287 IAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           +  Y +K+   EC+ +F +M SE   P+  T+ +++ A  T + L  G+++H   V  GL
Sbjct: 256 LGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGL 315

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           + ++ +  AL  M+ +CG+++ +++     +DRD+V + +++     HGH +EA E + +
Sbjct: 316 NSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQ 375

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M   GV  +R  +++VL ACS +  +  G      +++   + + +I   ++ +  R G 
Sbjct: 376 MRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGD 435

Query: 466 VKEAYELIKSMPFKPDESVWGPLLG--ACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           +  A EL  +MP K D   W  ++   A +E R   +     ++   +KP  +    +LS
Sbjct: 436 LPRARELFNTMP-KRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLS 494



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 142/288 (49%), Gaps = 11/288 (3%)

Query: 291 EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           E+   SE  ++ +  +      N   +  ++  C    +L+  +++HA +V  G+  ++ 
Sbjct: 59  EQHRGSEREDLSNAYQPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIF 118

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           L+N LI+MY KC ++SD+ ++F +M  RD+++W S++  Y   G  K+A +LF+EM  +G
Sbjct: 119 LSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAG 178

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470
             P +I ++++LTAC     ++ G K    + +     +  +   ++++ G+   +  A 
Sbjct: 179 FIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSAR 238

Query: 471 ELIKSMPFKPDESVWGPLLG--ACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA 528
           ++   + ++ D   +  +LG  A K +    +G    +    + P+ + TYI L + +  
Sbjct: 239 QVFSGI-YRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKV-TYINLLDAFTT 296

Query: 529 EGKWEEFAKFRKIM--RGMGSKKEVG--MSWIEVRDKVCGFIANDKMG 572
               +E  +  K+    G+ S   VG  ++ + VR   CG +A  K  
Sbjct: 297 PSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVR---CGDVAGAKQA 341


>gi|449502685|ref|XP_004161713.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g47840-like [Cucumis
           sativus]
          Length = 712

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/545 (39%), Positives = 324/545 (59%), Gaps = 3/545 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + + L+  Y   G I  +  +FDEMP R+ V+WT +I G             F  M R+
Sbjct: 152 FVGSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRS 211

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           +V  +++  +  LKA     +L++   +H   +K+G + + +V NSL  +Y  C   +D 
Sbjct: 212 KVEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCG-KLDY 270

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
               F  M+  + VSWTT++T Y   G    GL  FK M    V  N Y+FS  +  CA+
Sbjct: 271 GLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCAN 330

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              + +G+ +HA V+  GF + L V NSI+ +Y +   L+  ++ F  M  +D+ITW+TI
Sbjct: 331 FARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTI 390

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           IA Y + G   E     S+M+SE   PN F   S+++ C ++A L  G+Q+HA ++  GL
Sbjct: 391 IAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGL 450

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           +    + +ALI MYAKCG+I+++ KIF +    D+++WT+M+ GY  HGH +EAIELF+ 
Sbjct: 451 EQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFEN 510

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAG 464
           + K G+RPD + F+ VLTACSHAG+VD G  YF SM+ DY++ P+KE YGC++DLL RAG
Sbjct: 511 IQKVGLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKEHYGCMIDLLCRAG 570

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           R+ +A  LI+SMP + D+ VW  LL AC+ H   + G+ AA  VL L PN  GT+I L+N
Sbjct: 571 RLHDAETLIRSMPIQWDDVVWSTLLRACRIHGDVDCGQRAAAEVLKLDPNCAGTHITLAN 630

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           I+AA+GKW+E A  R +M+  G  KE G S ++V+D V  F++ D+     + +Y +LE 
Sbjct: 631 IFAAKGKWKEAANIRMLMKSKGVVKEPGWSSVKVKDSVFAFVSGDRSHPQGEDIYNILEE 690

Query: 585 LIRHM 589
           L   M
Sbjct: 691 LASGM 695



 Score =  254 bits (649), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 138/450 (30%), Positives = 247/450 (54%), Gaps = 6/450 (1%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM-VRNE 107
           A N +K       +++AR LFD++P+RD VSWT +I+GY + +  ++A  +F +M +++E
Sbjct: 52  ANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSE 111

Query: 108 VNPNAFTLSSVLKACK-GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           +  + F LS  LK C  G+  L    L HG ++K GL  S++V ++L+D+Y      +  
Sbjct: 112 LRIDPFLLSLGLKTCGLGLNYLYGTNL-HGFSVKXGLVNSVFVGSALLDMYMKIG-EIGR 169

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           +  VF++M  +N V+WT +ITG   +G    GL  F  M    VE + Y+++IA++A A 
Sbjct: 170 SCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASAD 229

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
           +G ++ G+ IH   +K GF  N  V NS+  MY +   L      F +M   D+++W TI
Sbjct: 230 SGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTI 289

Query: 287 IAGYEKSGSSEC-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           +  Y + G  +C L  F +M++    PN +TF+++I+ CA  A L  G+Q+HA ++  G 
Sbjct: 290 VTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGF 349

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
              L++AN+++ +Y+KCG ++   K+F  M  RD++TW++++  Y   G+G+EA E    
Sbjct: 350 VNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSR 409

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M   G +P+     +VL+ C    ++++G +    +    +     +   ++ +  + G 
Sbjct: 410 MRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGS 469

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           + EA ++     +K D   W  ++    EH
Sbjct: 470 IAEASKIFMD-SWKDDIISWTAMISGYAEH 498



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 178/364 (48%), Gaps = 5/364 (1%)

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG-VEMNPYSFSIAVR 222
           + +AR +F+ +  +++VSWT +I+GY +S +    L +F +M L+  + ++P+  S+ ++
Sbjct: 65  LKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLLSLGLK 124

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
            C       +G  +H   +K G  +++ V +++LDMY +   +  + + FDEM  ++ +T
Sbjct: 125 TCGLGLNYLYGTNLHGFSVKXGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAVT 184

Query: 283 WNTIIAGYEKSGSSEC-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           W  +I G  ++G SE  L  FS M   +   + + +   + A A   AL+ G+ +H   +
Sbjct: 185 WTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQTL 244

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           ++G D N  +AN+L  MY KCG +      F +M   D+V+WT+++  Y   G     ++
Sbjct: 245 KKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQ 304

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461
            F  M  S V P+   F AV++ C++   +  G +    +          +   ++ L  
Sbjct: 305 AFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYS 364

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKE--HRLPNLGKLAALRVLDLKPNMMGTY 519
           + G +    ++  SM F+ D   W  ++ A  +  +       L+ +R    KPN     
Sbjct: 365 KCGELASVSKVFCSMKFR-DIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALA 423

Query: 520 IILS 523
            +LS
Sbjct: 424 SVLS 427



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 168/363 (46%), Gaps = 26/363 (7%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S +A +L   Y   G ++     F +M   DVVSWT ++  Y      +     F  M  
Sbjct: 252 SFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRA 311

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           + V PN +T S+V+  C     L     +H   +  G   ++ V NS+M +Y+ C   + 
Sbjct: 312 SNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCG-ELA 370

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +   VF  MK+++ ++W+T+I  Y+  G G         M  EG + N ++ +  +  C 
Sbjct: 371 SVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCG 430

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           S   +  GK +HA V+  G      V ++++ MY +   +++A++ F +  + D+I+W  
Sbjct: 431 SMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTA 490

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I+GY + G S E + +F  ++     P+  TF  ++ AC+           HAG+V  G
Sbjct: 491 MISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACS-----------HAGMVDLG 539

Query: 345 L--------DGNLALAN----ALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYG 391
                    D ++  +      +ID+  + G + D++ +   M  + D V W++++    
Sbjct: 540 FYYFNSMSKDYHITPSKEHYGCMIDLLCRAGRLHDAETLIRSMPIQWDDVVWSTLLRACR 599

Query: 392 AHG 394
            HG
Sbjct: 600 IHG 602



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 110/233 (47%), Gaps = 6/233 (2%)

Query: 248 NLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMK 306
           +L   N+ L +  + + L DA   FD++ ++D ++W  II+GY   S SSE L +FSKM+
Sbjct: 48  DLAEANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMR 107

Query: 307 SE---RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG 363
            +   R  P  F  +  +  C        G  +H   V+ GL  ++ + +AL+DMY K G
Sbjct: 108 LQSELRIDP--FLLSLGLKTCGLGLNYLYGTNLHGFSVKXGLVNSVFVGSALLDMYMKIG 165

Query: 364 NISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLT 423
            I  S K+F EM  R+ VTWT+++ G    G+ +  +  F  M +S V  D   +   L 
Sbjct: 166 EIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALK 225

Query: 424 ACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
           A + +G ++ G            + N  +   +  +  + G++       + M
Sbjct: 226 ASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKM 278


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/566 (36%), Positives = 336/566 (59%), Gaps = 4/566 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + + T L+K Y   G  ++ R +F+++  RD+++W  MI G        +A  V+ +M R
Sbjct: 262 TAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQR 321

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             V PN  T   +L AC    +L     +H    K G    I V+N+L+ +Y+ C  S+ 
Sbjct: 322 EGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCG-SIK 380

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +ARLVF+ M  K+ +SWT +I G A SG G   L V++EM   GVE N  +++  + AC+
Sbjct: 381 DARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACS 440

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           S   + +G+ IH  V++ G  ++  V N++++MY     + DA Q FD M ++D++ +N 
Sbjct: 441 SPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNA 500

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I GY       E L +F +++ E   P+  T+ +++ ACA   +L   +++H  + + G
Sbjct: 501 MIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGG 560

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
              + ++ NAL+  YAKCG+ SD+  +F +M+ R++++W +++ G   HG G++A++LF+
Sbjct: 561 FFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFE 620

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRA 463
            M   GV+PD + F+++L+ACSHAGL++EG +YF SM+ D+ + P  E YGC+VDLLGRA
Sbjct: 621 RMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRA 680

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G++ EA  LIK+MPF+ +  +WG LLGAC+ H    + + AA   L L  +    Y+ LS
Sbjct: 681 GQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDLDNAVVYVALS 740

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           ++YAA G W+  AK RK+M   G  KE G SWI+V DK+  F+A D+    ++ +Y  L+
Sbjct: 741 HMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKLHYFVAEDRSHPQSEKIYAELD 800

Query: 584 MLIRHMNETAYEPDIDCLIHDL-EGE 608
            L   M    Y PD   ++HD+ EGE
Sbjct: 801 RLTHAMKMKGYVPDTRSVMHDVDEGE 826



 Score =  271 bits (693), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 153/494 (30%), Positives = 267/494 (54%), Gaps = 6/494 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A  ++  Y   G IEEAR +FD+M ++ VVSWT+ I GY        A+ +F +M +  
Sbjct: 163 VANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEG 222

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V PN  T  SVL A     +L     VH   +  G E    V  +L+ +YA C  S  + 
Sbjct: 223 VVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCG-SYKDC 281

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R VF  +  ++ ++W T+I G A  G       V+ +M  EGV  N  ++ I + AC ++
Sbjct: 282 RQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNS 341

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             + +GK IH+ V K GF S++ V N+++ MY R   + DA   FD+M  KD+I+W  +I
Sbjct: 342 AALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMI 401

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            G  KSG  +E L ++ +M+     PN  T+TSI+ AC++ AAL  G+++H  +V  GL 
Sbjct: 402 GGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLA 461

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            +  + N L++MY+ CG++ D++++F  M  RD+V + +M+ GY AH  GKEA++LFD +
Sbjct: 462 TDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRL 521

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
            + G++PD++ ++ +L AC+++G ++   +    +       +  +   +V    + G  
Sbjct: 522 QEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSF 581

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNMMGTYIILSN 524
            +A  + + M  K +   W  ++G   +H      L     +++  +KP+++ T++ L +
Sbjct: 582 SDASIVFEKMT-KRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIV-TFVSLLS 639

Query: 525 IYAAEGKWEEFAKF 538
             +  G  EE  ++
Sbjct: 640 ACSHAGLLEEGRRY 653



 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 159/528 (30%), Positives = 283/528 (53%), Gaps = 19/528 (3%)

Query: 52  LIKSYFDEGLIEEARTLFDEMP--ERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           LI  Y   G IEEAR ++ ++   ER V SW  M+ GY  +    +A  +  +M ++ + 
Sbjct: 64  LINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLA 123

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P+  T+ S L +CK   +L     +H  A++ GL   + V N ++++YA C  S++ AR 
Sbjct: 124 PDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCG-SIEEARE 182

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           VF+ M+ K+ VSWT  I GYA  G       +F++M  EGV  N  ++   + A +S   
Sbjct: 183 VFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAA 242

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           + +GK +H+ ++  G  S+  V  +++ MY +     D  Q F+++  +DLI WNT+I G
Sbjct: 243 LKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGG 302

Query: 290 YEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
             + G   E   ++++M+ E   PN  T+  ++ AC   AAL  G+++H+ + + G   +
Sbjct: 303 LAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSD 362

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           + + NALI MY++CG+I D++ +F +M  +D+++WT+M+ G    G G EA+ ++ EM +
Sbjct: 363 IGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQ 422

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKE 468
           +GV P+R+ + ++L ACS    ++ G +  + + +  +  +  +   +V++    G VK+
Sbjct: 423 AGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKD 482

Query: 469 AYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD------LKPNMMGTYIIL 522
           A ++   M  + D   +  ++G    H   NLGK  AL++ D      LKP+ + TYI +
Sbjct: 483 ARQVFDRM-IQRDIVAYNAMIGGYAAH---NLGK-EALKLFDRLQEEGLKPDKV-TYINM 536

Query: 523 SNIYAAEGKWEEFAKFRKIMR--GMGSKKEVGMSWIEVRDKVCGFIAN 568
            N  A  G  E   +   ++R  G  S   VG + +    K CG  ++
Sbjct: 537 LNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAK-CGSFSD 583



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 106/383 (27%), Positives = 198/383 (51%), Gaps = 5/383 (1%)

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           N+     +LK C  +K L     VH   I+       Y  N+L+++Y  C  S++ AR V
Sbjct: 22  NSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCG-SIEEARQV 80

Query: 171 FNDMKWKNDV--SWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
           +  + +      SW  ++ GY   G     L + ++M   G+  +  +    + +C S G
Sbjct: 81  WKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPG 140

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            + +G+ IH   ++ G   ++ V N IL+MY +   + +A + FD+M +K +++W   I 
Sbjct: 141 ALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIG 200

Query: 289 GYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           GY   G SE    +F KM+ E   PN  T+ S++ A ++ AAL  G+ VH+ I+  G + 
Sbjct: 201 GYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHES 260

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           + A+  AL+ MYAKCG+  D +++F ++ +RDL+ W +M+ G    G+ +EA E++++M 
Sbjct: 261 DTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQ 320

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
           + GV P++I ++ +L AC ++  +  G +    +       +  +   ++ +  R G +K
Sbjct: 321 REGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIK 380

Query: 468 EAYELIKSMPFKPDESVWGPLLG 490
           +A  +   M  + D   W  ++G
Sbjct: 381 DARLVFDKM-VRKDVISWTAMIG 402



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 163/305 (53%), Gaps = 12/305 (3%)

Query: 197 GGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSIL 256
           G + V + +  +G ++N   +   ++ C     +  G+ +H  +I+H    +   +N+++
Sbjct: 6   GAVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALI 65

Query: 257 DMYCRFDCLSDANQYFDEMT--EKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPN 313
           +MY +   + +A Q + +++  E+ + +WN ++ GY + G  E  L +  +M+    +P+
Sbjct: 66  NMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPD 125

Query: 314 CFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFS 373
             T  S +++C +  AL  G+++H   ++ GL  ++ +AN +++MYAKCG+I +++++F 
Sbjct: 126 RTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFD 185

Query: 374 EMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDE 433
           +M  + +V+WT  + GY   G  + A E+F +M + GV P+RI +++VL A S       
Sbjct: 186 KMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPA---- 241

Query: 434 GLKYFKSMNDYNVNPNKE----IYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
            LK+ K+++   +N   E    +   +V +  + G  K+  ++ + +    D   W  ++
Sbjct: 242 ALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKL-VNRDLIAWNTMI 300

Query: 490 GACKE 494
           G   E
Sbjct: 301 GGLAE 305


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/566 (37%), Positives = 338/566 (59%), Gaps = 6/566 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + T+L+  Y     +E+   +FDEM  ++VVSWT ++AGY     + QA  +F +M    
Sbjct: 129 VGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEG 188

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + PN FT ++VL       ++     VH M IK GL+ +I+V NS++++Y+   +  D A
Sbjct: 189 IKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSD-A 247

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           + VF+ M+ +N VSW ++I G+  +G       +F  M LEGV++    F+  ++ CA+ 
Sbjct: 248 KAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANI 307

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE-KDLITWNTI 286
             +SF K +H  VIK+G   +L +  +++  Y +   + DA + F  M   +++++W  I
Sbjct: 308 KEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAI 367

Query: 287 IAGYEKSGSSE-CLNMFSKMKSER-FSPNCFTFTSIIAACAT-LAALSCGQQVHAGIVRR 343
           I+GY ++G ++  +N+F +M+ E    PN FTF+S++ ACA   A++  G+Q H+  ++ 
Sbjct: 368 ISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKS 427

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G    L +++AL+ MYAK GNI  + ++F    DRDLV+W SM+ GY  HG GK+++++F
Sbjct: 428 GFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIF 487

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGR 462
           +EM    +  D I F+ V++AC+HAGLV+EG +YF  M  DY++ P  E Y C+VDL  R
Sbjct: 488 EEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSR 547

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AG +++A +LI  MPF    ++W  LL AC+ H    LG+LAA +++ L+P     Y++L
Sbjct: 548 AGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLL 607

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           SNIYA  G W+E AK RK+M     KKE G SWIEV++K   F+A D     +  +Y  L
Sbjct: 608 SNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKL 667

Query: 583 EMLIRHMNETAYEPDIDCLIHDLEGE 608
           E L   + +  Y PD   ++HD+E E
Sbjct: 668 EELSIRLKDAGYYPDTKYVLHDVEEE 693



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 129/435 (29%), Positives = 228/435 (52%), Gaps = 6/435 (1%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           ++ LFDE P++ +     ++  ++  + + +A  +F+ + R+    +  +LS VLK C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTT 184
           +        VH   IK G    + V  SL+D+Y     S+++   VF++M+ KN VSWT+
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMK-TESVEDGERVFDEMRVKNVVSWTS 163

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG 244
           L+ GY  +G     L +F +M LEG++ NP++F+  +   A+ G V  G  +H  VIK G
Sbjct: 164 LLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSG 223

Query: 245 FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFS 303
             S + V NS+++MY +   +SDA   FD M  ++ ++WN++IAG+  +G   E   +F 
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFY 283

Query: 304 KMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG 363
           +M+ E        F ++I  CA +  +S  +Q+H  +++ G D +L +  AL+  Y+KC 
Sbjct: 284 RMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCS 343

Query: 364 NISDSQKIFSEMSD-RDLVTWTSMMIGYGAHGHGKEAIELFDEMVK-SGVRPDRIVFMAV 421
            I D+ K+F  M   +++V+WT+++ GY  +G    A+ LF +M +  GV P+   F +V
Sbjct: 344 EIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSV 403

Query: 422 LTACSHAGLVDEGLKYFKSMNDYNVNPNKE-IYGCVVDLLGRAGRVKEAYELIKSMPFKP 480
           L AC+      E  K F S +  +   N   +   +V +  + G ++ A E+ K      
Sbjct: 404 LNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQ-VDR 462

Query: 481 DESVWGPLLGACKEH 495
           D   W  ++    +H
Sbjct: 463 DLVSWNSMISGYAQH 477


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/547 (38%), Positives = 326/547 (59%), Gaps = 4/547 (0%)

Query: 62  IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121
           IE+A  +F+ MP+RD+VSW  ++AGY       +A  V ++M      P++ TL SVL A
Sbjct: 193 IEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPA 252

Query: 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS 181
              +K+L     +HG A + G E  + V  +++D Y  C  S+ +ARLVF  M  +N VS
Sbjct: 253 VADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCG-SVRSARLVFKGMSSRNVVS 311

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           W T+I GYA +G        F +ML EGVE    S   A+ ACA+ G +  G+ +H  + 
Sbjct: 312 WNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLD 371

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLN 300
           +   G ++ VMNS++ MY +   +  A   F  +  K ++TWN +I GY ++G  +E LN
Sbjct: 372 EKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALN 431

Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360
           +F +M+S    P+ FT  S+I A A L+     + +H   +R  +D N+ +  ALID +A
Sbjct: 432 LFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHA 491

Query: 361 KCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420
           KCG I  ++K+F  M +R ++TW +M+ GYG +GHG+EA++LF+EM    V+P+ I F++
Sbjct: 492 KCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLS 551

Query: 421 VLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
           V+ ACSH+GLV+EG+ YF+SM + Y + P  + YG +VDLLGRAGR+ +A++ I+ MP K
Sbjct: 552 VIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVK 611

Query: 480 PDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFR 539
           P  +V G +LGAC+ H+   LG+  A  + DL P+  G +++L+N+YA+   W++ A+ R
Sbjct: 612 PGITVLGAMLGACRIHKNVELGEKTADELFDLDPDDGGYHVLLANMYASASMWDKVARVR 671

Query: 540 KIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDID 599
             M   G +K  G S +E+R++V  F +       ++ +Y  LE L   M    Y PD +
Sbjct: 672 TAMEKKGIQKTPGCSLVELRNEVHTFYSGSTNHPQSKRIYAYLETLGDEMKAAGYVPDTN 731

Query: 600 CLIHDLE 606
             IHD+E
Sbjct: 732 S-IHDVE 737



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 108/435 (24%), Positives = 213/435 (48%), Gaps = 18/435 (4%)

Query: 118 VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK 177
           +L+ C  +K L     +  + IK G       +  L+ ++       + AR VF  ++ K
Sbjct: 50  LLELCTSLKELHQ---ILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAAR-VFEPVEHK 105

Query: 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIH 237
            DV + T++ GYA +      +  ++ M  + V    Y F+  ++       +  G+ IH
Sbjct: 106 LDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIH 165

Query: 238 AAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SS 296
             VI +GF SNL  M +++++Y +   + DA + F+ M ++DL++WNT++AGY ++G + 
Sbjct: 166 GMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFAR 225

Query: 297 ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALI 356
             + +  +M+     P+  T  S++ A A L AL  G+ +H    R G +  + +A A++
Sbjct: 226 RAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAML 285

Query: 357 DMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI 416
           D Y KCG++  ++ +F  MS R++V+W +M+ GY  +G  +EA   F +M+  GV P  +
Sbjct: 286 DTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNV 345

Query: 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
             M  L AC++ G ++ G    + +++  +  +  +   ++ +  +  RV  A  +  ++
Sbjct: 346 SMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNL 405

Query: 477 PFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNMMGTYIILSNIYA------- 527
             K     W  ++    ++   N  L     ++  D+KP+   ++ ++S I A       
Sbjct: 406 KHKT-VVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPD---SFTLVSVITALADLSVT 461

Query: 528 AEGKWEEFAKFRKIM 542
            + KW      R +M
Sbjct: 462 RQAKWIHGLAIRTLM 476



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 170/344 (49%), Gaps = 3/344 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +AT ++ +YF  G +  AR +F  M  R+VVSW  MI GY       +A+  F++M+   
Sbjct: 280 VATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEG 339

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V P   ++   L AC  +  L     VH +  ++ +   + V NSL+ +Y+  C  +D A
Sbjct: 340 VEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSK-CKRVDIA 398

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             VF ++K K  V+W  +I GYA +G     L +F EM    ++ + ++    + A A  
Sbjct: 399 ASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADL 458

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
                 K IH   I+     N+ V  +++D + +   +  A + FD M E+ +ITWN +I
Sbjct: 459 SVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMI 518

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-GL 345
            GY  +G   E L++F++M++    PN  TF S+IAAC+    +  G      +    GL
Sbjct: 519 DGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGL 578

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIG 389
           +  +    A++D+  + G + D+ K   +M  +  +T    M+G
Sbjct: 579 EPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLG 622


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/598 (35%), Positives = 341/598 (57%), Gaps = 40/598 (6%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P+  +    +LI      G ++EA  LF  MPE D  SW  M++G+   +   ++   F
Sbjct: 76  MPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYF 135

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
           V+M R +   N ++  S L AC G+  L+    VH +  K      +Y+ ++L+D+Y+ C
Sbjct: 136 VKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKC 195

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
             S+  A  VF+ M  +N V+W +LIT Y  +G     L VF  M+  G+E +  + +  
Sbjct: 196 G-SVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASV 254

Query: 221 VRACASTGWVSFGKLIHAAVIK-HGFGSNLPVMNSILDMYCRFDCLSDANQYFD------ 273
           V ACAS   +  G  IHA V+K + F  +L + N+++DMY +   +++A + FD      
Sbjct: 255 VSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRN 314

Query: 274 -------------------------EMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKS 307
                                    +MT++++++WN +IAGY ++G +E  L +F  +K 
Sbjct: 315 VVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKR 374

Query: 308 ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD------GNLALANALIDMYAK 361
           E   P  +TF ++++ACA LA L  G+Q H  ++++G +       ++ + N+LIDMY K
Sbjct: 375 ESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMK 434

Query: 362 CGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAV 421
           CG+I D  ++F +M +RD V+W ++++GY  +G+G EA+++F +M+  G +PD +  + V
Sbjct: 435 CGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGV 494

Query: 422 LTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481
           L ACSHAGLV+EG  YF SM ++ + P K+ Y C+VDLLGRAG + EA  LI++MP  PD
Sbjct: 495 LCACSHAGLVEEGRHYFFSMEEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPD 554

Query: 482 ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKI 541
             VWG LL ACK H    +GK AA ++L++ P   G Y++LSN+YA  G+W +  + RK+
Sbjct: 555 AVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKL 614

Query: 542 MRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDID 599
           MR  G  K+ G SWIEV  +V  F+  DK   H + +Y VL+ML   M    Y PD +
Sbjct: 615 MRQQGVTKQPGCSWIEVESRVHVFLVKDKSHPHRKQIYSVLKMLTEQMKRVGYIPDAN 672



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 118/414 (28%), Positives = 209/414 (50%), Gaps = 49/414 (11%)

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           +VR+   PN+   + +L +C   +S     LVH   +       I+++N L+DVY   C 
Sbjct: 6   LVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGK-CD 64

Query: 163 SMDNARLVFNDMKWKNDVSWTTLI-------------------------------TGYAH 191
            +D+AR +F+ M  +N  +W +LI                               +G+A 
Sbjct: 65  CLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQ 124

Query: 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251
                  L  F +M  E   +N YSF  A+ ACA    ++ G  +HA V K  + +++ +
Sbjct: 125 HDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYM 184

Query: 252 MNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERF 310
            ++++DMY +   ++ A + F  M E++L+TWN++I  YE++G +SE L +F +M     
Sbjct: 185 GSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGL 244

Query: 311 SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG-LDGNLALANALIDMYAKCGNISDSQ 369
            P+  T  S+++ACA+L AL  G Q+HA +V+      +L L NAL+DMYAKC  +++++
Sbjct: 245 EPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEAR 304

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
           ++F  MS R++V+ TSM+ GY      K A  +F +M +  V    + + A++   +  G
Sbjct: 305 RVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNV----VSWNALIAGYTQNG 360

Query: 430 LVDEGLKYFKSMNDYNVNPNKEIYGCVVD--------LLGRAGR---VKEAYEL 472
             +E L+ F+ +   ++ P    +G ++         LLGR      +K+ +E 
Sbjct: 361 ENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEF 414



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 153/300 (51%), Gaps = 33/300 (11%)

Query: 213 NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYF 272
           N   F+  + +C  +      +L+HA ++   F   + + N ++D+Y + DCL DA + F
Sbjct: 14  NSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLF 73

Query: 273 DEMTEKDLITWNTIIAGYEKSG--------------------------------SSECLN 300
           D M +++  TWN++I+   KSG                                  E L 
Sbjct: 74  DRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLE 133

Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360
            F KM  E F  N ++F S ++ACA L  L+ G QVHA + +     ++ + +ALIDMY+
Sbjct: 134 YFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYS 193

Query: 361 KCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420
           KCG+++ ++++FS M +R+LVTW S++  Y  +G   EA+E+F  M+ SG+ PD +   +
Sbjct: 194 KCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLAS 253

Query: 421 VLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG-CVVDLLGRAGRVKEAYELIKSMPFK 479
           V++AC+    + EGL+    +   N   +  + G  +VD+  +  +V EA  +   M  +
Sbjct: 254 VVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIR 313


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/555 (37%), Positives = 326/555 (58%), Gaps = 3/555 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + ++L+  Y   GL  EAR +FD MPER+ VSW  MI+GY S     +A  +F  M R 
Sbjct: 144 FVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRRE 203

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           E   N F  +SVL A    + ++N   +H +A+K GL   + V N+L+ +YA C  S+D+
Sbjct: 204 EEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCG-SLDD 262

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A   F     KN ++W+ +ITGYA SG+    L +F  M L G+  + ++F   + AC+ 
Sbjct: 263 ALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSD 322

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G    GK +H  ++K GF S + VM +++DMY +   + DA + FD + E D++ W ++
Sbjct: 323 LGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSM 382

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I GY ++G +E  L+++ +M+ E   PN  T  S++ AC++LAAL  G+Q+HA  V+ G 
Sbjct: 383 IGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGF 442

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
              + + +AL  MYAKCG + D   +F  M  RD+++W +M+ G   +G GKEA+ELF+E
Sbjct: 443 GLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFEE 502

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAG 464
           M   G +PD + F+ +L+ACSH GLV+ G  YF+ M D + ++P  E Y C+VD+L RAG
Sbjct: 503 MQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILSRAG 562

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           ++KEA E  +S        +W  +LGAC+ +R   LG  A  ++++L       Y++LS+
Sbjct: 563 KLKEAIEFTESATIDHGMCLWRIILGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSS 622

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           IY+A G+WE+  + R++M+  G  KE G SWIE++  V  F+  D+M      ++  L  
Sbjct: 623 IYSALGRWEDVERVRRMMKLRGVSKEPGCSWIELKSGVHVFVVKDQMHPQIGDIHVELRQ 682

Query: 585 LIRHMNETAYEPDID 599
           L + M +  YEP  D
Sbjct: 683 LSKQMKDEGYEPATD 697



 Score =  236 bits (602), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 154/514 (29%), Positives = 256/514 (49%), Gaps = 17/514 (3%)

Query: 26  LQSVKKSSIQSDPPL---IPKGPS---ILATNLIKSYFDEGLIEEARTLFDEMPERDVVS 79
           LQ     S+Q    L   I K  S    +A +L+  Y     + EA+ +F+ +  +DVVS
Sbjct: 14  LQYTHNRSLQKGKALHAQIIKSSSSCVYIANSLVNLYAKCQRLREAKFVFERIQNKDVVS 73

Query: 80  WTVMIAGYTSF--NCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGM 137
           W  +I GY+    +  +    +F  M      PNA T + V  A   +   +   L H +
Sbjct: 74  WNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAV 133

Query: 138 AIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYG 197
           AIK      ++V +SLM++Y    ++ + AR VF+ M  +N VSW T+I+GYA       
Sbjct: 134 AIKMDSCRDVFVGSSLMNMYCKAGLTPE-ARKVFDTMPERNSVSWATMISGYASQKLAAE 192

Query: 198 GLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILD 257
            LG+F+ M  E    N + F+  + A      V+ GK IH   +K+G  S + V N+++ 
Sbjct: 193 ALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVT 252

Query: 258 MYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFT 316
           MY +   L DA Q F+  ++K+ ITW+ +I GY +SG S+  L +FS M      P+ FT
Sbjct: 253 MYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFT 312

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           F  +I AC+ L A   G+QVH  +++ G +  + +  AL+DMYAKC +I D++K F  + 
Sbjct: 313 FVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQ 372

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
           + D+V WTSM+ GY  +G  ++A+ L+  M   G+ P+ +   +VL ACS    +++G +
Sbjct: 373 EPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQ 432

Query: 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR 496
                  Y       I   +  +  + G +K+   + + MP + D   W  ++    ++ 
Sbjct: 433 IHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPAR-DVISWNAMISGLSQNG 491

Query: 497 LPN--LGKLAALRVLDLKPNMMGTYIILSNIYAA 528
                L     +++   KP+    Y+   NI +A
Sbjct: 492 CGKEALELFEEMQLEGTKPD----YVTFVNILSA 521


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/557 (39%), Positives = 328/557 (58%), Gaps = 5/557 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + T+LI  Y   G IEEAR +FD++ E+  V+WT +IAGYT       +  +F +M    
Sbjct: 188 VGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETN 247

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V P+ + +SSVL AC  ++ L     +H   ++ G E  + V N L+D Y T C  +   
Sbjct: 248 VVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFY-TKCNRVKAG 306

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R +F+ M  KN +SWTT+I+GY  +   +  + +F EM   G + + ++ +  + +C S 
Sbjct: 307 RKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSR 366

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  G+ +HA  IK    S+  V N ++DMY + + L DA + FD M E+++I++N +I
Sbjct: 367 EALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMI 426

Query: 288 AGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            GY      SE L +F +M+     PN FTF ++I A + LA+L  GQQ H  +V+ GLD
Sbjct: 427 EGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLD 486

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
               + NAL+DMYAKCG+I +++K+F+    RD+V W SM+  +  HG  +EA+ +F EM
Sbjct: 487 FCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREM 546

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
           +K G++P+ + F+AVL+ACSHAG V++GL +F SM  + + P  E Y CVV LLGR+G++
Sbjct: 547 MKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMPGFGIKPGTEHYACVVSLLGRSGKL 606

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            EA E I+ MP +P   VW  LL AC+      LGK AA   +   P   G+YI+LSNI+
Sbjct: 607 FEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIF 666

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYG-VLEML 585
           A++G W +  K R  M      KE G SWIEV +KV  FIA D   +H +   G VL++L
Sbjct: 667 ASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNNKVNVFIARDT--THREADIGSVLDIL 724

Query: 586 IRHMNETAYEPDIDCLI 602
           I+H+    Y PD   L+
Sbjct: 725 IQHIKGAGYVPDATALL 741



 Score =  257 bits (656), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 149/521 (28%), Positives = 278/521 (53%), Gaps = 15/521 (2%)

Query: 32  SSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFN 91
           S +QSD        + LA  LI        ++ AR +FD+MP +++++W+ M++ Y+   
Sbjct: 78  SGLQSD--------TFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQG 129

Query: 92  CHNQAWTVFVEMVRNE-VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVE 150
              +A  VFV++ R    +PN F L+SV++AC  +  +   A +HG  ++ G +  +YV 
Sbjct: 130 YSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVG 189

Query: 151 NSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGV 210
            SL+D Y+    +++ ARLVF+ +  K  V+WTT+I GY   G     L +F +M    V
Sbjct: 190 TSLIDFYSKNG-NIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNV 248

Query: 211 EMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQ 270
             + Y  S  + AC+   ++  GK IHA V++ G   ++ V+N ++D Y + + +    +
Sbjct: 249 VPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRK 308

Query: 271 YFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAA 329
            FD+M  K++I+W T+I+GY + S   E + +F +M    + P+ F  TS++ +C +  A
Sbjct: 309 LFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREA 368

Query: 330 LSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIG 389
           L  G+QVHA  ++  L+ +  + N LIDMYAK   + D++K+F  M++++++++ +M+ G
Sbjct: 369 LEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEG 428

Query: 390 YGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN 449
           Y +     EA+ELF EM     +P+   F A++TA S+   +  G ++   +    ++  
Sbjct: 429 YSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFC 488

Query: 450 KEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALR 507
             +   +VD+  + G ++EA ++  S  ++ D   W  ++    +H      LG    + 
Sbjct: 489 PFVTNALVDMYAKCGSIEEARKMFNSSIWR-DVVCWNSMISTHAQHGEAEEALGMFREMM 547

Query: 508 VLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSK 548
              ++PN + T++ + +  +  G+ E+       M G G K
Sbjct: 548 KEGIQPNYV-TFVAVLSACSHAGRVEDGLNHFNSMPGFGIK 587



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 117/412 (28%), Positives = 222/412 (53%), Gaps = 8/412 (1%)

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS--MD 165
           + P     +++L+       + +  ++HG  I  GL+   ++ N L++V   C  S  +D
Sbjct: 45  LRPKRREFANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINV---CSKSDRVD 101

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAVRAC 224
           NAR+VF+ M  KN ++W+++++ Y+  G     L VF ++  + G   N +  +  +RAC
Sbjct: 102 NARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRAC 161

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
              G V  G  +H  V++ GF  ++ V  S++D Y +   + +A   FD+++EK  +TW 
Sbjct: 162 TQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWT 221

Query: 285 TIIAGYEKSGSSEC-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           TIIAGY K G S   L +F++M+     P+ +  +S+++AC+ L  L  G+Q+HA ++RR
Sbjct: 222 TIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRR 281

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G + ++++ N LID Y KC  +   +K+F +M  +++++WT+M+ GY  +    EA++LF
Sbjct: 282 GTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLF 341

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
            EM + G +PD     +VLT+C     +++G +        N+  ++ +   ++D+  ++
Sbjct: 342 GEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKS 401

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN-LGKLAALRVLDLKPN 514
             + +A ++   M  +   S    + G   + +L   L     +RV   KPN
Sbjct: 402 NLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLQKPN 453


>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 733

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/561 (37%), Positives = 337/561 (60%), Gaps = 5/561 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +++ LI  Y   G IE+   +F++M  R+VVSWT +IAG      + +    F EM R++
Sbjct: 161 VSSALIDMYMKVGKIEQGCRVFEKMMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSK 220

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V  ++ T +  LKA      L +   +H   IK+G + S +V N+L  +Y  C    D  
Sbjct: 221 VGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCG-KPDYV 279

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             +F  M+  + VSWTTLI+ Y   G     +  FK M    V  N Y+F+  + +CA+ 
Sbjct: 280 MRLFEKMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANL 339

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
               +G+ IH  V++ G  + L V NSI+ +Y +   L  A+  F  +T KD+I+W+TII
Sbjct: 340 AAAKWGEQIHGHVLRLGLVNALSVANSIITLYSKCGLLKSASLVFHGITRKDIISWSTII 399

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           + Y + G + E  +  S M+ E   PN F  +S+++ C ++A L  G+QVHA ++  G+D
Sbjct: 400 SVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLLCIGID 459

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
               + +A+I MY+KCG++ ++ KIF+ M   D+++WT+M+ GY  HG+ +EAI LF+++
Sbjct: 460 HEAMVHSAIISMYSKCGSVQEASKIFNGMKINDIISWTAMINGYAEHGYSQEAINLFEKI 519

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGR 465
              G++PD ++F+ VLTAC+HAG+VD G  YF  M N Y ++P+KE YGC++DLL RAGR
Sbjct: 520 SSVGLKPDYVMFIGVLTACNHAGMVDLGFYYFMLMTNVYRISPSKEHYGCLIDLLCRAGR 579

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           + EA  +I+SMPF  D+ VW  LL AC+ H   + G+  A ++L L PN  GT+I L+NI
Sbjct: 580 LSEAEHIIRSMPFHTDDVVWSTLLRACRVHGDVDRGRWTAEQLLQLDPNSAGTHITLANI 639

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           YAA+G+W+E A  RK+M+  G  KE G SW+ V D++  F+A D+    ++++  VL++L
Sbjct: 640 YAAKGRWKEAAHIRKLMKSKGVIKERGWSWVNVNDQLNAFVAGDQAHPQSEHITTVLKLL 699

Query: 586 IRHMNETAYEPDIDCLIHDLE 606
             ++ +   + +I  L  D+E
Sbjct: 700 SANIGDA--QQEIRSLHEDVE 718



 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 134/445 (30%), Positives = 240/445 (53%), Gaps = 4/445 (0%)

Query: 53  IKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM-VRNEVNPN 111
           +K    +G + +AR +FD+M  RD +SWT +IAGY + +   +A  +F  M V      +
Sbjct: 64  LKQLVKQGQLCKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGPQRD 123

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
            F +S  LKAC    ++    L+HG ++K GL  S++V ++L+D+Y          R VF
Sbjct: 124 QFMISVALKACALGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCR-VF 182

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
             M  +N VSWT +I G  H+G    GL  F EM    V  + ++F+IA++A A +  + 
Sbjct: 183 EKMMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLH 242

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            GK IH   IK GF  +  V+N++  MY +        + F++M   D+++W T+I+ Y 
Sbjct: 243 HGKAIHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYV 302

Query: 292 KSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           + G  E  +  F +M+    SPN +TF ++I++CA LAA   G+Q+H  ++R GL   L+
Sbjct: 303 QMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVNALS 362

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           +AN++I +Y+KCG +  +  +F  ++ +D+++W++++  Y   G+ KEA +    M + G
Sbjct: 363 VANSIITLYSKCGLLKSASLVFHGITRKDIISWSTIISVYSQGGYAKEAFDYLSWMRREG 422

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470
            +P+     +VL+ C    L+++G +    +    ++    ++  ++ +  + G V+EA 
Sbjct: 423 PKPNEFALSSVLSVCGSMALLEQGKQVHAHLLCIGIDHEAMVHSAIISMYSKCGSVQEAS 482

Query: 471 ELIKSMPFKPDESVWGPLLGACKEH 495
           ++   M    D   W  ++    EH
Sbjct: 483 KIFNGMKIN-DIISWTAMINGYAEH 506



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 105/388 (27%), Positives = 183/388 (47%), Gaps = 42/388 (10%)

Query: 36  SDPPLIPKGPSILATNLIKSYFDE---------------GLIEEARTLFDEMPERDVVSW 80
           +D  L+  G +I  T  IK  FDE               G  +    LF++M   DVVSW
Sbjct: 236 ADSSLLHHGKAI-HTQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSW 294

Query: 81  TVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIK 140
           T +I+ Y        A   F  M ++ V+PN +T ++V+ +C  + +      +HG  ++
Sbjct: 295 TTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHVLR 354

Query: 141 EGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLG 200
            GL  ++ V NS++ +Y+ C + + +A LVF+ +  K+ +SW+T+I+ Y+  G       
Sbjct: 355 LGLVNALSVANSIITLYSKCGL-LKSASLVFHGITRKDIISWSTIISVYSQGGYAKEAFD 413

Query: 201 VFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYC 260
               M  EG + N ++ S  +  C S   +  GK +HA ++  G      V ++I+ MY 
Sbjct: 414 YLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLLCIGIDHEAMVHSAIISMYS 473

Query: 261 RFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTS 319
           +   + +A++ F+ M   D+I+W  +I GY + G S E +N+F K+ S    P+   F  
Sbjct: 474 KCGSVQEASKIFNGMKINDIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVMFIG 533

Query: 320 IIAACATLAALSCGQQVHAGIVRRGLDGNLALANA------------LIDMYAKCGNISD 367
           ++ AC            HAG+V  G    + + N             LID+  + G +S+
Sbjct: 534 VLTACN-----------HAGMVDLGFYYFMLMTNVYRISPSKEHYGCLIDLLCRAGRLSE 582

Query: 368 SQKIFSEMS-DRDLVTWTSMMIGYGAHG 394
           ++ I   M    D V W++++     HG
Sbjct: 583 AEHIIRSMPFHTDDVVWSTLLRACRVHG 610



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 149/338 (44%), Gaps = 19/338 (5%)

Query: 248 NLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKM- 305
           N+  +NS L    +   L  A   FD+MT +D I+W T+IAGY   S S E L +FS M 
Sbjct: 56  NMLELNSELKQLVKQGQLCKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMW 115

Query: 306 ---KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362
                +R   + F  +  + ACA    +  G+ +H   V+ GL  ++ +++ALIDMY K 
Sbjct: 116 VHPGPQR---DQFMISVALKACALGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKV 172

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
           G I    ++F +M  R++V+WT+++ G    G+  E +  F EM +S V  D   F   L
Sbjct: 173 GKIEQGCRVFEKMMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIAL 232

Query: 423 TACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDE 482
            A + + L+  G            + +  +   +  +  + G+      L + M   PD 
Sbjct: 233 KASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRM-PDV 291

Query: 483 SVWGPLLGAC-----KEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY-AAEGKWEEFA 536
             W  L+        +EH +    +   +R   + PN      ++S+    A  KW E  
Sbjct: 292 VSWTTLISTYVQMGEEEHAVEAFKR---MRKSYVSPNKYTFAAVISSCANLAAAKWGEQI 348

Query: 537 KFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSH 574
               +  G+ +   V  S I +  K CG + +  +  H
Sbjct: 349 HGHVLRLGLVNALSVANSIITLYSK-CGLLKSASLVFH 385


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/563 (36%), Positives = 330/563 (58%), Gaps = 3/563 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L   L+  Y   G + +AR +FD + +R++VSWT MI  + + N + +A+  +  M    
Sbjct: 133 LENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAG 192

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
             P+  T  S+L A    + L     VH    K GLE    V  SL+ +YA C   +  A
Sbjct: 193 CKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCG-DISKA 251

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           +++F+ +  KN V+WT LI GYA  G     L + ++M    V  N  +++  ++ C + 
Sbjct: 252 QVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTP 311

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  GK +H  +I+ G+G  + V+N+++ MYC+   L +A + F ++  +D++TW  ++
Sbjct: 312 LALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMV 371

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            GY + G   E +++F +M+ +   P+  TFTS + +C++ A L  G+ +H  +V  G  
Sbjct: 372 TGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYS 431

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            ++ L +AL+ MYAKCG++ D++ +F++MS+R++V WT+M+ G   HG  +EA+E F++M
Sbjct: 432 LDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQM 491

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGR 465
            K G++PD++ F +VL+AC+H GLV+EG K+F+SM  DY + P  E Y C VDLLGRAG 
Sbjct: 492 KKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGH 551

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           ++EA  +I +MPF+P  SVWG LL AC+ H     G+ AA  VL L P+  G Y+ LSNI
Sbjct: 552 LEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAYVALSNI 611

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           YAA G++E+  K R++M      KE G SWIEV  KV  F   DK     + +Y  L  L
Sbjct: 612 YAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPEAKEIYAELGKL 671

Query: 586 IRHMNETAYEPDIDCLIHDLEGE 608
              + E  Y PD   ++HD++ E
Sbjct: 672 TEQIKEQGYVPDTRFVLHDVDEE 694



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 132/462 (28%), Positives = 231/462 (50%), Gaps = 14/462 (3%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTL-FDEMPE----RDVVSWTVMIAGYTSFNCHN---- 94
           G SIL  N  +S  D        T+  D++P     R V   T+  +G  S  C      
Sbjct: 21  GRSILMFNRYQSNVDTAFELTTPTVSHDQLPGNAGFRKVD--TLANSGDVSILCKQGRLK 78

Query: 95  QAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLM 154
           +A  +   M+       +     +L+ C  ++SL     VH   +K G++ + Y+EN+L+
Sbjct: 79  EALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLL 138

Query: 155 DVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP 214
            +YA C  S+ +AR VF+ ++ +N VSWT +I  +            ++ M L G + + 
Sbjct: 139 SMYAKCG-SLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDK 197

Query: 215 YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE 274
            +F   + A  +   +  G+ +H  + K G      V  S++ MY +   +S A   FD+
Sbjct: 198 VTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDK 257

Query: 275 MTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG 333
           + EK+++TW  +IAGY + G  +  L +  KM+    +PN  T+TSI+  C T  AL  G
Sbjct: 258 LPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHG 317

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
           ++VH  I++ G    + + NALI MY KCG + +++K+F ++  RD+VTWT+M+ GY   
Sbjct: 318 KKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQL 377

Query: 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIY 453
           G   EAI+LF  M + G++PD++ F + LT+CS    + EG    + +     + +  + 
Sbjct: 378 GFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQ 437

Query: 454 GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
             +V +  + G + +A  +   M  + +   W  ++  C +H
Sbjct: 438 SALVSMYAKCGSMDDARLVFNQMSER-NVVAWTAMITGCAQH 478


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/543 (37%), Positives = 327/543 (60%), Gaps = 3/543 (0%)

Query: 62  IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121
           + EAR +FD MPERD+VSW  ++AGY+       A  +   M    + P+  T+ SVL A
Sbjct: 186 VNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPA 245

Query: 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS 181
              ++ +S    +HG A++ G +  + +  +L+D+YA C  S++ AR +F+ M  +N VS
Sbjct: 246 VSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCG-SLETARQLFDGMLERNVVS 304

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           W ++I  Y  + N    + +F++ML EGV+    S   A+ ACA  G +  G+ IH   +
Sbjct: 305 WNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSV 364

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLN 300
           + G   N+ V+NS++ MYC+   +  A   F ++  + L++WN +I G+ ++G   + LN
Sbjct: 365 ELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALN 424

Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360
            FS+M+S    P+ FT+ S+I A A L+     + +H  ++R  LD N+ +  AL+DMYA
Sbjct: 425 YFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYA 484

Query: 361 KCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420
           KCG I  ++ IF  MS+R + TW +M+ GYG HG GK A+ELF+EM K  ++P+ + F++
Sbjct: 485 KCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLS 544

Query: 421 VLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
           V++ACSH+GLV+ GLK F  M + Y++  + + YG +VDLLGRAGR+ EA++ I  MP K
Sbjct: 545 VISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVK 604

Query: 480 PDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFR 539
           P  +V+G +LGAC+ H+  N  + AA R+ +L P+  G +++L+NIY A   WE+  + R
Sbjct: 605 PAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVR 664

Query: 540 KIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDID 599
             M   G +K  G S +E++++V  F +       ++ +Y  LE LI H+ E  Y PD +
Sbjct: 665 VSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTN 724

Query: 600 CLI 602
            ++
Sbjct: 725 LVL 727



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 126/472 (26%), Positives = 232/472 (49%), Gaps = 13/472 (2%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T L+  +   G ++EA  +F+ +  +  V +  M+ G+   +  ++A   FV M  ++V 
Sbjct: 73  TKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVE 132

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P  +  + +LK C     L     +HG+ +K G    ++    L ++YA  C  ++ AR 
Sbjct: 133 PVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAK-CRQVNEARK 191

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           VF+ M  ++ VSW T++ GY+ +G     L + K M  E ++ +  +    + A ++   
Sbjct: 192 VFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRL 251

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           +S GK IH   ++ GF S + +  +++DMY +   L  A Q FD M E+++++WN++I  
Sbjct: 252 ISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDA 311

Query: 290 Y-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           Y +     E + +F KM  E   P   +    + ACA L  L  G+ +H   V  GLD N
Sbjct: 312 YVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRN 371

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           +++ N+LI MY KC  +  +  +F ++  R LV+W +M++G+  +G   +A+  F +M  
Sbjct: 372 VSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRS 431

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKE 468
             V+PD   +++V+TA +   +          +    ++ N  +   +VD+  + G +  
Sbjct: 432 RTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMI 491

Query: 469 AYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD------LKPN 514
           A  LI  M  +   + W  ++     H     GK AAL + +      +KPN
Sbjct: 492 A-RLIFDMMSERHVTTWNAMIDGYGTH---GFGK-AALELFEEMQKGTIKPN 538



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 115/420 (27%), Positives = 213/420 (50%), Gaps = 9/420 (2%)

Query: 105 RNEVNPNAFTLSS--VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           RN +  N +   +  +L+ C  +K L     +  +  K GL    + +  L+ ++     
Sbjct: 28  RNYIPANVYEHPAALLLERCSSLKELRQ---ILPLVFKNGLYQEHFFQTKLVSLFCRYG- 83

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
           S+D A  VF  +  K +V + T++ G+A   +    L  F  M  + VE   Y+F+  ++
Sbjct: 84  SVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLK 143

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
            C     +  GK IH  ++K GF  +L  M  + +MY +   +++A + FD M E+DL++
Sbjct: 144 VCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVS 203

Query: 283 WNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           WNTI+AGY ++G +   L M   M  E   P+  T  S++ A + L  +S G+++H   +
Sbjct: 204 WNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAM 263

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           R G D  + ++ AL+DMYAKCG++  ++++F  M +R++V+W SM+  Y  + + KEA+ 
Sbjct: 264 RSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAML 323

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461
           +F +M+  GV+P  +  M  L AC+  G ++ G    K   +  ++ N  +   ++ +  
Sbjct: 324 IFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYC 383

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR-LPNLGKLAALRVLDLKPNMMGTYI 520
           +   V  A  +   +  +   S    +LG  +  R +  L   + +R   +KP+   TY+
Sbjct: 384 KCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTF-TYV 442



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 169/355 (47%), Gaps = 25/355 (7%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           ++T L+  Y   G +E AR LFD M ER+VVSW  MI  Y       +A  +F +M+   
Sbjct: 273 ISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEG 332

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V P   ++   L AC  +  L     +H ++++ GL+ ++ V NSL+ +Y   C  +D A
Sbjct: 333 VKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCK-CKEVDTA 391

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             +F  ++ +  VSW  +I G+A +G     L  F +M    V+ + +++   + A A  
Sbjct: 392 ASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAEL 451

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
                 K IH  V++     N+ V  +++DMY +   +  A   FD M+E+ + TWN +I
Sbjct: 452 SITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMI 511

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL- 345
            GY   G     L +F +M+     PN  TF S+I+AC+           H+G+V  GL 
Sbjct: 512 DGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACS-----------HSGLVEAGLK 560

Query: 346 -----------DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIG 389
                      + ++    A++D+  + G ++++     +M  +  V     M+G
Sbjct: 561 CFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLG 615


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/549 (39%), Positives = 321/549 (58%), Gaps = 4/549 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +  +LI +YF  G +E A  LFDE+ E DVVSW  MI G            +F++M+   
Sbjct: 232 VVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILG 291

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V  +  TL SVL AC  + +LS    +HG  +K      +   N+L+D+Y+ C  +++ A
Sbjct: 292 VEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCG-NLNGA 350

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             VF  M     VSWT++I  Y   G     +G+F EM  +GV  + Y+ +  V ACA +
Sbjct: 351 TEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACS 410

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  G+ +H+ VIK+G GSNLPV N++++MY +   + +A   F ++  KD+++WNT+I
Sbjct: 411 SSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMI 470

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            GY ++   +E L +F  M+ ++F P+  T   ++ ACA LAAL  G+++H  I+RRG  
Sbjct: 471 GGYSQNLLPNEALELFLDMQ-KQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYF 529

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            +L +A AL+DMYAKCG +  +Q +F  +  +DL++WT M+ GYG HG G EAI  F+EM
Sbjct: 530 SDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEM 589

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGR 465
             +G+ PD   F A+L ACSH+GL++EG K+F SM N+  V P  E Y CVVDLL R G 
Sbjct: 590 RIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGN 649

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           + +AY+ I+SMP KPD ++WG LL  C+ H    L +  A  + +L+P+    Y++L+N+
Sbjct: 650 LSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANV 709

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           YA   KWEE  K RK M+  G K+  G SWIEV  K   F+A +      + +  +L  L
Sbjct: 710 YAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKKIDVLLSKL 769

Query: 586 IRHMNETAY 594
              M    Y
Sbjct: 770 TMQMQNEDY 778



 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 146/510 (28%), Positives = 265/510 (51%), Gaps = 10/510 (1%)

Query: 40  LIPKGPSI---LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQA 96
           +I  G S+   L   L+  Y + G + + R +FD++    V  W ++++ Y       ++
Sbjct: 120 IISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRES 179

Query: 97  WTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDV 156
            ++F +M +  V  N +T + VLK    +  +     VHG  +K G   +  V NSL+  
Sbjct: 180 VSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAA 239

Query: 157 YATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYS 216
           Y      +++A  +F+++   + VSW ++I G   +G    GL +F +ML+ GVE++  +
Sbjct: 240 YFKFG-GVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTT 298

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
               + ACA+ G +S G+ +H   +K  F   +   N++LDMY +   L+ A + F +M 
Sbjct: 299 LVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMG 358

Query: 277 EKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ 335
           +  +++W +IIA Y + G  S+ + +F +M+S+   P+ +T TSI+ ACA  ++L  G+ 
Sbjct: 359 DTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRD 418

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
           VH+ +++ G+  NL + NALI+MYAKCG++ +++ +FS++  +D+V+W +M+ GY  +  
Sbjct: 419 VHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLL 478

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455
             EA+ELF +M K   +PD I    VL AC+    +D+G +    +       +  +   
Sbjct: 479 PNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACA 537

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKP 513
           +VD+  + G +  A  L   +P K D   W  ++     H   N  +     +R+  ++P
Sbjct: 538 LVDMYAKCGLLVLAQLLFDMIP-KKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEP 596

Query: 514 NMMGTYIILSNIYAAEGKWEEFAKFRKIMR 543
           +      IL N  +  G   E  KF   MR
Sbjct: 597 DESSFSAIL-NACSHSGLLNEGWKFFNSMR 625



 Score =  204 bits (520), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 135/457 (29%), Positives = 230/457 (50%), Gaps = 14/457 (3%)

Query: 117 SVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW 176
           SVL+ C   KSL +   VH + I  G+     +   L+ +Y  C   +   R +F+ +  
Sbjct: 99  SVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCG-DLVQGRKIFDKIMN 157

Query: 177 KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLI 236
                W  L++ YA  GN    + +FK+M   GV  N Y+F+  ++  A+ G V   K +
Sbjct: 158 DKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRV 217

Query: 237 HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-S 295
           H  V+K GFGSN  V+NS++  Y +F  +  A+  FDE++E D+++WN++I G   +G S
Sbjct: 218 HGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFS 277

Query: 296 SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
              L +F +M       +  T  S++ ACA +  LS G+ +H   V+      +  +N L
Sbjct: 278 GNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTL 337

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           +DMY+KCGN++ + ++F +M D  +V+WTS++  Y   G   +AI LFDEM   GVRPD 
Sbjct: 338 LDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDI 397

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKS 475
               +++ AC+ +  +D+G      +    +  N  +   ++++  + G V+EA  +   
Sbjct: 398 YTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSK 457

Query: 476 MPFKPDESVWGPLLGACKEHRLPNLGKLAALRV-LDLKPNMMGTYIILSNIYAAEGKWEE 534
           +P K D   W  ++G   ++ LPN     AL + LD++       I ++ +  A      
Sbjct: 458 IPVK-DIVSWNTMIGGYSQNLLPN----EALELFLDMQKQFKPDDITMACVLPACAGLAA 512

Query: 535 FAKFRKI-----MRGMGSKKEVGMSWIEVRDKVCGFI 566
             K R+I      RG  S   V  + +++  K CG +
Sbjct: 513 LDKGREIHGHILRRGYFSDLHVACALVDMYAK-CGLL 548



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/379 (28%), Positives = 198/379 (52%), Gaps = 7/379 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           + +  L+  Y   G +  A  +F +M +  +VSWT +IA Y     ++ A  +F EM   
Sbjct: 332 VFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSK 391

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V P+ +T++S++ AC    SL     VH   IK G+  ++ V N+L+++YA C  S++ 
Sbjct: 392 GVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCG-SVEE 450

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           ARLVF+ +  K+ VSW T+I GY+ +      L +F +M  +  + +  + +  + ACA 
Sbjct: 451 ARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQ-FKPDDITMACVLPACAG 509

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  G+ IH  +++ G+ S+L V  +++DMY +   L  A   FD + +KDLI+W  +
Sbjct: 510 LAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVM 569

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-G 344
           IAGY   G  +E ++ F++M+     P+  +F++I+ AC+    L+ G +    +    G
Sbjct: 570 IAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECG 629

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHGHGKEAIELF 403
           ++  L     ++D+ A+ GN+S + K    M  + D   W  ++ G   H   K A ++ 
Sbjct: 630 VEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVA 689

Query: 404 DEMVKSGVRPDRIVFMAVL 422
           + + +  + PD   +  VL
Sbjct: 690 EHIFE--LEPDNTRYYVVL 706



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 138/271 (50%), Gaps = 9/271 (3%)

Query: 211 EMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQ 270
           E+   S+   ++ CA    +  GK +H+ +I +G   +  +   ++ MY     L    +
Sbjct: 91  ELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRK 150

Query: 271 YFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAA 329
            FD++    +  WN +++ Y K G+  E +++F KM+      NC+TFT ++   A L  
Sbjct: 151 IFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGK 210

Query: 330 LSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIG 389
           +   ++VH  +++ G   N A+ N+LI  Y K G +  +  +F E+S+ D+V+W SM+ G
Sbjct: 211 VKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMING 270

Query: 390 YGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP- 448
              +G     +E+F +M+  GV  D    ++VL AC++ G +  G    ++++ + V   
Sbjct: 271 CVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLG----RALHGFGVKAC 326

Query: 449 -NKEIY--GCVVDLLGRAGRVKEAYELIKSM 476
            ++E+     ++D+  + G +  A E+   M
Sbjct: 327 FSEEVVFSNTLLDMYSKCGNLNGATEVFVKM 357



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 3/194 (1%)

Query: 299 LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDM 358
           + + +K KS     N  ++ S++  CA   +L  G++VH+ I+  G+  + AL   L+ M
Sbjct: 81  IELLTKSKSYELGLN--SYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFM 138

Query: 359 YAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVF 418
           Y  CG++   +KIF ++ +  +  W  +M  Y   G+ +E++ LF +M K GV  +   F
Sbjct: 139 YVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTF 198

Query: 419 MAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPF 478
             VL   +  G V E  +    +       N  +   ++    + G V+ A+ L   +  
Sbjct: 199 TCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELS- 257

Query: 479 KPDESVWGPLLGAC 492
           +PD   W  ++  C
Sbjct: 258 EPDVVSWNSMINGC 271


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/562 (37%), Positives = 339/562 (60%), Gaps = 5/562 (0%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108
           A  L+  Y   G IE A T+F++MP  DVVSW   I+G  +    ++A  + ++M  + +
Sbjct: 243 ANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGL 302

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
            PN FTLSSVLKAC G  + +    +HG  +K   +   +V   L+D+YA     +D+AR
Sbjct: 303 VPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGF-LDDAR 361

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEM--NPYSFSIAVRACAS 226
            VF+ M  ++ + W  LI+G +H G     L +F  M  EG+++  N  + +  +++ AS
Sbjct: 362 KVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTAS 421

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
           +  +   + +HA   K G  S+  V+N ++D Y +   L  A + F E    D+I+  T+
Sbjct: 422 SEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTM 481

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           +    +    E  + +F +M  +   P+ F  +S++ AC +L+A   G+QVHA +++R  
Sbjct: 482 MTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQF 541

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             ++   NAL+  YAKCG+I D+   FS + +R +V+W++M+ G   HGHGK A++LF  
Sbjct: 542 TSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHR 601

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAG 464
           M+  GV P+ I   +VL+AC+HAGLVD+  KYF+SM + + ++  +E Y C++D+LGRAG
Sbjct: 602 MLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHYACMIDILGRAG 661

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           ++++A EL+ +MPF+ + +VWG LLGA + HR P LG++AA ++  L+P   GT+++L+N
Sbjct: 662 KLEDAMELVNNMPFQANAAVWGALLGASRVHRDPELGRMAAEKLFTLEPEKSGTHVLLAN 721

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
            YA+ G W+E AK RK+M+    KKE  MSW+E++DKV  FI  DK    T+ +YG L  
Sbjct: 722 TYASAGMWDEMAKVRKLMKDSNVKKEPAMSWVEIKDKVHTFIVGDKSHPMTRDIYGKLAE 781

Query: 585 LIRHMNETAYEPDIDCLIHDLE 606
           L   MN+  Y P+++  +HD++
Sbjct: 782 LGDLMNKAGYVPNVEVDLHDVD 803



 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 147/494 (29%), Positives = 243/494 (49%), Gaps = 21/494 (4%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEM----PERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
            +A  L+  Y   G+++EAR +FDE      ER+ VSW  MI+ Y   +    A  VF E
Sbjct: 136 FVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFRE 195

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           MV +   PN F  S V+ AC G + L     VHG  ++ G E  ++  N+L+D+Y+    
Sbjct: 196 MVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLG- 254

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            ++ A  VF  M   + VSW   I+G    G+ +  L +  +M   G+  N ++ S  ++
Sbjct: 255 DIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLK 314

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           ACA  G  + G+ IH  ++K     +  V   ++DMY +   L DA + FD M  +DLI 
Sbjct: 315 ACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLIL 374

Query: 283 WNTIIAGYEKSGS-SECLNMFSKMKSE--RFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           WN +I+G    G   E L++F +M+ E      N  T  S++ + A+  A+   +QVHA 
Sbjct: 375 WNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHAL 434

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
             + GL  +  + N LID Y KCG +  + K+F E    D+++ T+MM       HG++A
Sbjct: 435 AEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDA 494

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL 459
           I+LF +M++ G+ PD  V  ++L AC+     ++G +    +       +      +V  
Sbjct: 495 IKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYA 554

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG-- 517
             + G +++A      +P +   S W  ++G   +H     GK    R LDL   M+   
Sbjct: 555 YAKCGSIEDADMAFSGLPERGIVS-WSAMIGGLAQH---GHGK----RALDLFHRMLDEG 606

Query: 518 ---TYIILSNIYAA 528
               +I L+++ +A
Sbjct: 607 VAPNHITLTSVLSA 620



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 124/390 (31%), Positives = 200/390 (51%), Gaps = 13/390 (3%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
            + +L+  Y    L   AR +FDE+P+   VSW+ ++  Y++      A   F  M    
Sbjct: 39  FSNHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRG 98

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V  N F L  VLK    ++     A VH +A+   L   ++V N+L+ VY    + +D A
Sbjct: 99  VPCNEFALPVVLKCAPDVRF---GAQVHALAVATRLVHDVFVANALVAVYGGFGM-VDEA 154

Query: 168 RLVFNDM----KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           R +F++       +N VSW T+I+ Y  +      +GVF+EM+  G   N + FS  V A
Sbjct: 155 RRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNA 214

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C  +  +  G+ +H AV++ G+  ++   N+++DMY +   +  A   F++M   D+++W
Sbjct: 215 CTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSW 274

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N  I+G    G     L +  +MKS    PN FT +S++ ACA   A + G+Q+H  +V+
Sbjct: 275 NAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVK 334

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
              D +  +A  L+DMYAK G + D++K+F  M  RDL+ W +++ G    G   E + L
Sbjct: 335 AVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSL 394

Query: 403 FDEMVKSGVRPD--RIVFMAVL--TACSHA 428
           F  M K G+  D  R    +VL  TA S A
Sbjct: 395 FHRMRKEGLDLDVNRTTLASVLKSTASSEA 424



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 114/384 (29%), Positives = 199/384 (51%), Gaps = 12/384 (3%)

Query: 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFND 173
           T+ S L      +SL   A +H   +K GL       N L+ +Y+ C +    AR VF++
Sbjct: 6   TIGSALARFGTSRSLFAGAHLHSHLLKSGLLAGF--SNHLLTLYSRCRLP-SAARAVFDE 62

Query: 174 MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG 233
           +     VSW++L+T Y+++G     L  F+ M   GV  N ++  + ++ CA    V FG
Sbjct: 63  IPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLK-CAPD--VRFG 119

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT----EKDLITWNTIIAG 289
             +HA  +      ++ V N+++ +Y  F  + +A + FDE      E++ ++WNT+I+ 
Sbjct: 120 AQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISA 179

Query: 290 YEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           Y K+  S + + +F +M      PN F F+ ++ AC     L  G+QVH  +VR G + +
Sbjct: 180 YVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKD 239

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           +  ANAL+DMY+K G+I  +  +F +M   D+V+W + + G   HGH   A+EL  +M  
Sbjct: 240 VFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKS 299

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKE 468
           SG+ P+     +VL AC+ AG  + G +    M     + ++ +   +VD+  + G + +
Sbjct: 300 SGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDD 359

Query: 469 AYELIKSMPFKPDESVWGPLLGAC 492
           A ++   MP + D  +W  L+  C
Sbjct: 360 ARKVFDFMP-RRDLILWNALISGC 382



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 130/280 (46%), Gaps = 17/280 (6%)

Query: 23  KQSLQSVKKSSIQSDPPLIPKGPSILA------------TNLIKSYFDEGLIEEARTLFD 70
           + +L SV KS+  S+     +    LA              LI SY+  G ++ A  +F 
Sbjct: 409 RTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFK 468

Query: 71  EMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSN 130
           E    D++S T M+   +  +    A  +FV+M+R  + P++F LSS+L AC  + +   
Sbjct: 469 ESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQ 528

Query: 131 AALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYA 190
              VH   IK      ++  N+L+  YA C  S+++A + F+ +  +  VSW+ +I G A
Sbjct: 529 GKQVHAHLIKRQFTSDVFAGNALVYAYAKCG-SIEDADMAFSGLPERGIVSWSAMIGGLA 587

Query: 191 HSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLP 250
             G+G   L +F  ML EGV  N  + +  + AC   G V   K    + +K  FG +  
Sbjct: 588 QHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFES-MKETFGIDRT 646

Query: 251 VMN--SILDMYCRFDCLSDANQYFDEMT-EKDLITWNTII 287
             +   ++D+  R   L DA +  + M  + +   W  ++
Sbjct: 647 EEHYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALL 686


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/591 (36%), Positives = 342/591 (57%), Gaps = 21/591 (3%)

Query: 36  SDPPLIPKGPSILATNLIKSYFDEGL----------------IEEARTLFDEMPERDVVS 79
           S+P     G +I A  L   YFD  +                I+ AR +FD+M  +++V+
Sbjct: 156 SNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVT 215

Query: 80  WTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAI 139
           WT+MI  Y+     + A  +F  ++ +E  P+ FTL+S+L AC  ++  S    +H   I
Sbjct: 216 WTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVI 275

Query: 140 KEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGL 199
           + GL   ++V  +L+D+YA    +++N+R +FN M   N +SWT LI+GY  S      +
Sbjct: 276 RSGLASDVFVGCTLVDMYAKSA-AVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAI 334

Query: 200 GVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMY 259
            +F  ML   V  N ++FS  ++ACAS      GK +H   IK G  +   V NS+++MY
Sbjct: 335 KLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTINCVGNSLINMY 394

Query: 260 CRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS-GSSECLNMFSKMKSERFSPNCFTFT 318
            R   +  A + F+ + EK+LI++NT      K+  S E  N   +      SP  FT+ 
Sbjct: 395 ARSGTMECARKAFNILFEKNLISYNTAADANAKALDSDESFNHEVEHTGVGASP--FTYA 452

Query: 319 SIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR 378
            +++  A +  +  G+Q+HA IV+ G   NL + NALI MY+KCGN   + ++F++M  R
Sbjct: 453 CLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNALISMYSKCGNKEAALQVFNDMGYR 512

Query: 379 DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYF 438
           +++TWTS++ G+  HG   +A+ELF EM++ GV+P+ + ++AVL+ACSH GL+DE  K+F
Sbjct: 513 NVITWTSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSACSHVGLIDEAWKHF 572

Query: 439 KSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
            SM+ +++++P  E Y C+VDLLGR+G + EA E I SMPF  D  VW   LG+C+ HR 
Sbjct: 573 NSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDADALVWRTFLGSCRVHRN 632

Query: 498 PNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIE 557
             LG+ AA ++L+ +P+   TYI+LSN+YA+EG+W++ A  RK M+     KE G SWIE
Sbjct: 633 TKLGEHAAKKILEREPHDPATYILLSNLYASEGRWDDVAALRKSMKQKKLIKETGYSWIE 692

Query: 558 VRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           V ++V  F   D      + +Y  L+ L   +    Y P+ D ++HD+E E
Sbjct: 693 VDNQVHKFHVGDTSHPQARKIYDELDELALKIKNLGYIPNTDFVLHDVEDE 743



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 133/542 (24%), Positives = 272/542 (50%), Gaps = 33/542 (6%)

Query: 20  PIIKQSLQSVKKSSIQS---------DPPLIPKG---PSILATNLIKSYFDEGLIEEART 67
           P+IK SL  + K+ I+S            LI  G    S+L  +LI  Y   G  E A +
Sbjct: 38  PLIKSSL--LLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALS 95

Query: 68  LFDEM--PERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV---RNEVNPNAFTLSSVLKAC 122
           +F  M   +RD+VSW+ +I+ + + +  ++A   F+ M+   RN + PN +  +++L++C
Sbjct: 96  IFRNMGHHKRDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSC 155

Query: 123 KGMKSLSNAALVHGMAIKEG-LEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS 181
                 +    +    +K G  +  + V  +L+D++    + + +AR+VF+ M+ KN V+
Sbjct: 156 SNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVT 215

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           WT +IT Y+  G     + +F  +L+     + ++ +  + AC    + S GK +H+ VI
Sbjct: 216 WTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVI 275

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS-GSSECLN 300
           + G  S++ V  +++DMY +   + ++ + F+ M   ++++W  +I+GY +S    E + 
Sbjct: 276 RSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIK 335

Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360
           +F  M     +PNCFTF+S++ ACA+L     G+Q+H   ++ GL     + N+LI+MYA
Sbjct: 336 LFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTINCVGNSLINMYA 395

Query: 361 KCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD-EMVKSGVRPDRIVFM 419
           + G +  ++K F+ + +++L+++ +      A+    ++ E F+ E+  +GV      + 
Sbjct: 396 RSGTMECARKAFNILFEKNLISYNT---AADANAKALDSDESFNHEVEHTGVGASPFTYA 452

Query: 420 AVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
            +L+  +  G + +G +    +       N  I   ++ +  + G  + A ++   M ++
Sbjct: 453 CLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNALISMYSKCGNKEAALQVFNDMGYR 512

Query: 480 PDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNMMGTYIIL----SNIYAAEGKWE 533
            +   W  ++    +H      L     +  + +KPN + TYI +    S++   +  W+
Sbjct: 513 -NVITWTSIISGFAKHGFATKALELFYEMLEIGVKPNEV-TYIAVLSACSHVGLIDEAWK 570

Query: 534 EF 535
            F
Sbjct: 571 HF 572


>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 820

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/563 (36%), Positives = 334/563 (59%), Gaps = 6/563 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            ++T+L+  Y   G IE++  +F+ M E + VSW  MI+G TS   H +A+ +FV M   
Sbjct: 257 FVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNG 316

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
              PN +TL SV KA   +  ++    V   A + G+EG++ V  +L+D+Y+ C  S+ +
Sbjct: 317 ACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCG-SLHD 375

Query: 167 ARLVF--NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           AR VF  N +    +  W  +I+GY+ SG     L ++ +M   G+  + Y++     A 
Sbjct: 376 ARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAI 435

Query: 225 ASTGWVSFGKLIHAAVIKHGFG-SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           A++  + FG+++H  V+K G     + V N+I D Y +   L D  + FD M E+D+++W
Sbjct: 436 AASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSW 495

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
            T++  Y +S    E L  F  M+ E F+PN FTF+S++ +CA+L  L  G+QVH  + +
Sbjct: 496 TTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCK 555

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            GLD    + +ALIDMYAKCG+I+++ K+F ++S+ D+V+WT+++ GY  HG  ++A++L
Sbjct: 556 AGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQL 615

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLG 461
           F  M  SG++ + +  + VL ACSH G+V+EGL YF+ M D Y V P  E Y C++DLLG
Sbjct: 616 FRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLG 675

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           R GR+ +A E I+ MP +P+E VW  LLG C+ H    LG++AA ++L ++P    TY++
Sbjct: 676 RVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAARKILSIRPEYSATYVL 735

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGV 581
           LSN Y   G +E+    R +M+  G KKE G SWI V+ +V  F + D+     + +Y  
Sbjct: 736 LSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVKGRVHKFYSGDQQHPQKKEIYVK 795

Query: 582 LEMLIRHMNETAYEPDIDCLIHD 604
           LE L   +    Y PD+  ++++
Sbjct: 796 LEELREKIKAMGYVPDLRYVLNN 818



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 128/438 (29%), Positives = 222/438 (50%), Gaps = 14/438 (3%)

Query: 68  LFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKS 127
           +FDEMP+R+V SWTVMI G T        +  F EM+ + + P+ F  S+++++C G+ S
Sbjct: 177 VFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDS 236

Query: 128 LSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLIT 187
           L    +VH   +  G    I+V  SL+++YA    S++++  VFN M   N VSW  +I+
Sbjct: 237 LELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLG-SIEDSYWVFNMMTEHNQVSWNAMIS 295

Query: 188 GYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGS 247
           G   +G       +F  M       N Y+     +A      V+ GK +     + G   
Sbjct: 296 GCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEG 355

Query: 248 NLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT------WNTIIAGYEKSG-SSECLN 300
           N+ V  +++DMY +   L DA   FD     + I       WN +I+GY +SG S E L 
Sbjct: 356 NVLVGTALIDMYSKCGSLHDARSVFD----TNFINCGVNTPWNAMISGYSQSGCSQEALE 411

Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD-GNLALANALIDMY 359
           ++ +M     + + +T+ S+  A A   +L  G+ VH  +++ GLD   +++ NA+ D Y
Sbjct: 412 LYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAY 471

Query: 360 AKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFM 419
           +KCG + D +K+F  M +RD+V+WT+++  Y     G+EA+  F  M + G  P++  F 
Sbjct: 472 SKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFS 531

Query: 420 AVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
           +VL +C+    ++ G +    +    ++  K I   ++D+  + G + EA ++   +   
Sbjct: 532 SVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKIS-N 590

Query: 480 PDESVWGPLLGACKEHRL 497
           PD   W  ++    +H L
Sbjct: 591 PDIVSWTAIISGYAQHGL 608



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 130/476 (27%), Positives = 229/476 (48%), Gaps = 55/476 (11%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVS--WTVMIAGYTSFNCHNQAWTVF 100
           +G  ++ T LI  Y   G + +AR++FD       V+  W  MI+GY+   C  +A  ++
Sbjct: 354 EGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELY 413

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLE-GSIYVENSLMDVYAT 159
           V+M +N +  + +T  SV  A    KSL    +VHGM +K GL+   + V N++ D Y+ 
Sbjct: 414 VQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSK 473

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
           C   +++ R VF+ M+ ++ VSWTTL+T Y+ S  G   L  F  M  EG   N ++FS 
Sbjct: 474 CGF-LEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSS 532

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
            + +CAS  ++ +G+ +H  + K G  +   + ++++DMY +   +++A + FD+++  D
Sbjct: 533 VLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPD 592

Query: 280 LITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           +++W  II+GY + G  E  L +F +M+      N  T   ++ AC+           H 
Sbjct: 593 IVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACS-----------HG 641

Query: 339 GIVRRGL-------DG-----NLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTS 385
           G+V  GL       DG      +     +ID+  + G + D+ +   +M  + + + W +
Sbjct: 642 GMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQT 701

Query: 386 MMIGYGAHGHGKEAIELFDEMVKS--GVRPDRIVFMAVLTACS-HAGLVDEGLKYFKSMN 442
           ++ G   HG+    +EL +   +    +RP+      +L+      G  ++GL     M 
Sbjct: 702 LLGGCRVHGN----VELGEIAARKILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMK 757

Query: 443 DYNVNPNKEIYGCVVDLLGRAGRV----------KEAY-------ELIKSMPFKPD 481
           D  V   KE     + + GR  +           KE Y       E IK+M + PD
Sbjct: 758 DQGV--KKEPGYSWISVKGRVHKFYSGDQQHPQKKEIYVKLEELREKIKAMGYVPD 811



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 114/416 (27%), Positives = 204/416 (49%), Gaps = 26/416 (6%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGS--IYVENSLMDVYATCCISMDNARLVFN 172
           L  VL+ C    S+  A  VHG+ +K   E    + + N    VY+ C      A  VF+
Sbjct: 121 LIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCS-EFRAACGVFD 179

Query: 173 DMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSF 232
           +M  +N  SWT +I G    G  + G   F EML  G+  + +++S  +++C     +  
Sbjct: 180 EMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLEL 239

Query: 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEK 292
           GK++HA ++  GF +++ V  S+L+MY +   + D+   F+ MTE + ++WN +I+G   
Sbjct: 240 GKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTS 299

Query: 293 SG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLAL 351
           +G   E  ++F +MK+   +PN +T  S+  A   L  ++ G++V       G++GN+ +
Sbjct: 300 NGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLV 359

Query: 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVT------WTSMMIGYGAHGHGKEAIELFDE 405
             ALIDMY+KCG++ D++ +F    D + +       W +M+ GY   G  +EA+EL+ +
Sbjct: 360 GTALIDMYSKCGSLHDARSVF----DTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQ 415

Query: 406 MVKSGVRPDRIVFMAVLTACSHA-----GLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLL 460
           M ++G+  D   + +V  A + +     G V  G+     ++   V+ N  I     D  
Sbjct: 416 MCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAI----ADAY 471

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPN 514
            + G +++  ++   M  + D   W  L+ A  +  L    L     +R     PN
Sbjct: 472 SKCGFLEDVRKVFDRME-ERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPN 526


>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 734

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/560 (38%), Positives = 327/560 (58%), Gaps = 3/560 (0%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   + ++L+  Y   G + +AR LFD MPER+ VSW  MI+GY S +  ++A  VF  M
Sbjct: 151 GDVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTVSWATMISGYASSDIADKAVEVFELM 210

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
            R E   N F L+SVL A      +     VH +AIK GL   + V N+L+ +YA C  S
Sbjct: 211 RREEEIQNEFALTSVLSALTSDVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYAKCG-S 269

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +D+A   F     KN ++W+ ++TGYA  G+    L +F +M   GV  + ++    + A
Sbjct: 270 LDDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINA 329

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C+    V  GK +H+   K GFG  L V+++++DMY +   L+DA + F+ + + D++ W
Sbjct: 330 CSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADARKGFECVQQPDVVLW 389

Query: 284 NTIIAGYEKSGSSEC-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
            +II GY ++G  E  LN++ KM+ ER  PN  T  S++ AC++LAAL  G+Q+HA I++
Sbjct: 390 TSIITGYVQNGDYEGGLNLYGKMQMERVIPNELTMASVLRACSSLAALDQGKQMHARIIK 449

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            G    + + +AL  MY KCG++ D   IF  M  RD+++W +M+ G   +GHG +A+EL
Sbjct: 450 YGFKLEVPIGSALSAMYTKCGSLDDGYLIFWRMPSRDVISWNAMISGLSQNGHGNKALEL 509

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLG 461
           F++M+  G++PD + F+ +L+ACSH GLVD G +YFK M D +N+ P  E Y C+VD+L 
Sbjct: 510 FEKMLLEGIKPDPVTFVNLLSACSHMGLVDRGWEYFKMMFDEFNIAPMVEHYACMVDILS 569

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           RAG++ EA E I+S        +W  LLGACK HR   LG  A  ++++L       Y++
Sbjct: 570 RAGKLNEAKEFIESATVDHGLCLWRILLGACKNHRNYELGVYAGEKLVELGSPESSAYVL 629

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGV 581
           LS+IY A G  E   + R+IM+  G  KE G SWIE++  V  F+  D        +   
Sbjct: 630 LSSIYTALGDRENVERVRRIMKARGVNKEPGCSWIELKGLVHVFVVGDNQHPQVDEIRLE 689

Query: 582 LEMLIRHMNETAYEPDIDCL 601
           LE+L + M +  Y+P +D L
Sbjct: 690 LELLTKLMIDEGYQPLLDRL 709



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 138/458 (30%), Positives = 238/458 (51%), Gaps = 10/458 (2%)

Query: 46  SILATN-LIKSYFDEGLIEEARTLFDEMPE--RDVVSWTVMIAGYTSFNCHNQ---AWTV 99
           SI  TN  +  Y     +  A TLFD + +  +D VSW  +I  ++  +  +    A ++
Sbjct: 45  SIYVTNTFLNLYAKTNHLSHALTLFDSINDNDKDDVSWNSLINAFSQNHSSSSSSFAISL 104

Query: 100 FVEMVR-NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA 158
           F  M+R N V PNA TL+ V  A   +  +      H +A+K G  G +YV +SL+++Y 
Sbjct: 105 FRRMMRANNVIPNAHTLAGVFSAASNLSDVVAGKQAHSVAVKTGCSGDVYVGSSLLNMYC 164

Query: 159 TCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFS 218
                 D AR +F+ M  +N VSW T+I+GYA S      + VF+ M  E    N ++ +
Sbjct: 165 KTGFVFD-ARKLFDRMPERNTVSWATMISGYASSDIADKAVEVFELMRREEEIQNEFALT 223

Query: 219 IAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK 278
             + A  S  +V  G+ +H+  IK+G  + + V N+++ MY +   L DA + F+   +K
Sbjct: 224 SVLSALTSDVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVRTFEFSGDK 283

Query: 279 DLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
           + ITW+ ++ GY + G S+  L +F+KM S    P+ FT   +I AC+ L A+  G+Q+H
Sbjct: 284 NSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINACSDLCAVVEGKQMH 343

Query: 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
           +   + G    L + +A++DMYAKCG+++D++K F  +   D+V WTS++ GY  +G  +
Sbjct: 344 SFAFKLGFGLQLYVLSAVVDMYAKCGSLADARKGFECVQQPDVVLWTSIITGYVQNGDYE 403

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVV 457
             + L+ +M    V P+ +   +VL ACS    +D+G +    +  Y       I   + 
Sbjct: 404 GGLNLYGKMQMERVIPNELTMASVLRACSSLAALDQGKQMHARIIKYGFKLEVPIGSALS 463

Query: 458 DLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            +  + G + + Y +   MP + D   W  ++    ++
Sbjct: 464 AMYTKCGSLDDGYLIFWRMPSR-DVISWNAMISGLSQN 500



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 109/387 (28%), Positives = 201/387 (51%), Gaps = 9/387 (2%)

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P    L   L  C   K++     +H   +K G   SIYV N+ +++YA     + +A  
Sbjct: 9   PQHRQLLQDLIECTHNKNILKGRTLHARILKTGSISSIYVTNTFLNLYAKTN-HLSHALT 67

Query: 170 VFNDMKW--KNDVSWTTLITGYAHSGNGYG---GLGVFKEML-LEGVEMNPYSFSIAVRA 223
           +F+ +    K+DVSW +LI  ++ + +       + +F+ M+    V  N ++ +    A
Sbjct: 68  LFDSINDNDKDDVSWNSLINAFSQNHSSSSSSFAISLFRRMMRANNVIPNAHTLAGVFSA 127

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
            ++   V  GK  H+  +K G   ++ V +S+L+MYC+   + DA + FD M E++ ++W
Sbjct: 128 ASNLSDVVAGKQAHSVAVKTGCSGDVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTVSW 187

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
            T+I+GY  S  + + + +F  M+ E    N F  TS+++A  +   +  G+QVH+  ++
Sbjct: 188 ATMISGYASSDIADKAVEVFELMRREEEIQNEFALTSVLSALTSDVFVYTGRQVHSLAIK 247

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            GL   +++ANAL+ MYAKCG++ D+ + F    D++ +TW++M+ GY   G   +A++L
Sbjct: 248 NGLLAIVSVANALVTMYAKCGSLDDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKL 307

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           F++M  SGV P     + V+ ACS    V EG +               +   VVD+  +
Sbjct: 308 FNKMHSSGVLPSEFTLVGVINACSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAK 367

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLL 489
            G + +A +  + +  +PD  +W  ++
Sbjct: 368 CGSLADARKGFECVQ-QPDVVLWTSII 393



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 177/355 (49%), Gaps = 22/355 (6%)

Query: 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE--KDLITWNTIIAGY 290
           G+ +HA ++K G  S++ V N+ L++Y + + LS A   FD + +  KD ++WN++I  +
Sbjct: 30  GRTLHARILKTGSISSIYVTNTFLNLYAKTNHLSHALTLFDSINDNDKDDVSWNSLINAF 89

Query: 291 EKSGSSE----CLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
            ++ SS      +++F +M ++    PN  T   + +A + L+ +  G+Q H+  V+ G 
Sbjct: 90  SQNHSSSSSSFAISLFRRMMRANNVIPNAHTLAGVFSAASNLSDVVAGKQAHSVAVKTGC 149

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
            G++ + ++L++MY K G + D++K+F  M +R+ V+W +M+ GY +     +A+E+F+ 
Sbjct: 150 SGDVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTVSWATMISGYASSDIADKAVEVFEL 209

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M +     +     +VL+A +    V  G +         +     +   +V +  + G 
Sbjct: 210 MRREEEIQNEFALTSVLSALTSDVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYAKCGS 269

Query: 466 VKEAYELIKSMPFKPDES--VWGPLL-----GACKEHRLPNLGKLAALRVLDLKPNMMGT 518
           + +A   +++  F  D++   W  ++     G   +  L    K+ +  VL  +  ++G 
Sbjct: 270 LDDA---VRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGV 326

Query: 519 YIILSNIYA-AEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMG 572
               S++ A  EGK      F+    G G +  V  + +++  K CG +A+ + G
Sbjct: 327 INACSDLCAVVEGKQMHSFAFK---LGFGLQLYVLSAVVDMYAK-CGSLADARKG 377


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/560 (37%), Positives = 339/560 (60%), Gaps = 3/560 (0%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108
           A  L+  Y   G++E+A ++FDE+ + D+VSW  +IAG      H++A  +  EM ++ +
Sbjct: 149 ANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGM 208

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
            PN FTLSS LKAC GM        +H   IK  +    ++   L+D+Y+ C  SMD+AR
Sbjct: 209 CPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCN-SMDDAR 267

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
           LVF  M  ++ ++W  +I+G++ +        +F  M  EG+  N  + S  +++ A+  
Sbjct: 268 LVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQ 327

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
                + IHA  +K GF  +  V+NS++D Y +   + DA + F+E    DL+ + +++ 
Sbjct: 328 ANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVT 387

Query: 289 GYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
            Y + G   E L ++ +M+     P+ F  +S++ ACA+L+A   G+QVH  I++ G   
Sbjct: 388 AYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMS 447

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           ++   N+L++MYAKCG+I D+   FS +  R +V+W++M+ G   HG+GKEA++LF +M+
Sbjct: 448 DIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQML 507

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRV 466
           K GV P+ I  ++VL AC+HAGLV E   YF SM   + + P +E Y C++DLLGRAG++
Sbjct: 508 KVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKL 567

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
           + A EL+  MPF+ +  VWG LLGA + H+  +LG+ AA  +L L+P   GT+++L+NIY
Sbjct: 568 EAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEMLLALEPEKSGTHVLLANIY 627

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           A+ G W++ A+ R++M+    KKE GMSW+EV+DKV  FI  D+  S +  +Y  L+ L 
Sbjct: 628 ASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDKVYTFIVGDRSHSRSTEIYAKLDELS 687

Query: 587 RHMNETAYEPDIDCLIHDLE 606
             + +  Y P ++  +HD+E
Sbjct: 688 DLLKKAGYVPMVEIDLHDVE 707



 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 131/449 (29%), Positives = 243/449 (54%), Gaps = 3/449 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A +L+  Y   G   +AR+LFD +P+R VVSW  + + Y   + H +A ++F +MV + 
Sbjct: 47  VANSLVILYAKCGGFGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSG 106

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + PN F+LSS++  C G++       +HG  IK G +   +  N+L+D+YA   I +++A
Sbjct: 107 IRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGI-LEDA 165

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             VF+++   + VSW  +I G       +  L + +EM   G+  N ++ S A++ACA  
Sbjct: 166 SSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGM 225

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
                G+ +H+++IK   GS+  +   ++DMY + + + DA   F  M E+D+I WN +I
Sbjct: 226 ALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVI 285

Query: 288 AGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           +G+ ++    E  ++F  M +E    N  T ++++ + A L A    +Q+HA  ++ G +
Sbjct: 286 SGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFE 345

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            +  + N+LID Y KCG++ D+ ++F E    DLV +TS++  Y   G G+EA+ L+ EM
Sbjct: 346 FDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEM 405

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
              G++PD  V  ++L AC+     ++G +    +  +    +      +V++  + G +
Sbjct: 406 QDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSI 465

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEH 495
           ++A      +P +   S W  ++G   +H
Sbjct: 466 EDASCAFSRIPVRGIVS-WSAMIGGLAQH 493



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 141/484 (29%), Positives = 228/484 (47%), Gaps = 51/484 (10%)

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           +  N F   SVLKAC   K L     VHG+ +  G +   +V NSL+ +YA C     +A
Sbjct: 6   IKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCG-GFGDA 64

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R +F+ +  ++ VSW  L + Y HS      + +F +M+L G+  N +S S  +  C   
Sbjct: 65  RSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGL 124

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
                G+ IH  +IK G+ S+    N+++DMY +   L DA+  FDE+ + D+++WN II
Sbjct: 125 EDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAII 184

Query: 288 AG-YEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           AG          L +  +M      PN FT +S + ACA +A    G+Q+H+ +++  + 
Sbjct: 185 AGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMG 244

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            +  L   LIDMY+KC ++ D++ +F  M +RD++ W +++ G+  +   +EA  LF  M
Sbjct: 245 SDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLM 304

Query: 407 VKSGVRPDRIVFMAVLTACS-----------HAGLVDEGLKYFKSMNDYNVNPNKEIYG- 454
              G+  ++     VL + +           HA  +  G ++    ++Y VN   + YG 
Sbjct: 305 HTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEF----DNYVVNSLIDTYGK 360

Query: 455 C--------------VVDLL---------GRAGRVKEAYELIKSMP---FKPDESVWGPL 488
           C              +VDL+          + G+ +EA  L   M     KPD  V   L
Sbjct: 361 CGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSL 420

Query: 489 LGACKEHRLPNLGKLAALRVLDLKPNMMGTYII---LSNIYAAEGKWEEFA-KFRKI-MR 543
           L AC        GK   + +  LK   M        L N+YA  G  E+ +  F +I +R
Sbjct: 421 LNACASLSAYEQGKQVHVHI--LKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVR 478

Query: 544 GMGS 547
           G+ S
Sbjct: 479 GIVS 482



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 184/364 (50%), Gaps = 7/364 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S L   LI  Y     +++AR +F  MPERD+++W  +I+G++      +A ++F  M  
Sbjct: 247 SFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHT 306

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             +  N  TLS+VLK+   +++      +H +++K G E   YV NSL+D Y  C   ++
Sbjct: 307 EGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCG-HVE 365

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +A  VF +    + V +T+L+T YA  G G   L ++ EM   G++ + +  S  + ACA
Sbjct: 366 DATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACA 425

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           S      GK +H  ++K GF S++   NS+++MY +   + DA+  F  +  + +++W+ 
Sbjct: 426 SLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSA 485

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI-VRR 343
           +I G  + G   E L +F +M      PN  T  S++ AC     ++  +     + +  
Sbjct: 486 MIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILF 545

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGH---GKEA 399
           G++        +ID+  + G +  + ++ ++M    + + W +++     H +   G++A
Sbjct: 546 GIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQA 605

Query: 400 IELF 403
            E+ 
Sbjct: 606 AEML 609



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 150/286 (52%), Gaps = 2/286 (0%)

Query: 205 MLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264
           M L G++ N ++F   ++AC  T  +  GK +H  V+  GF S+  V NS++ +Y +   
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG 60

Query: 265 LSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAA 323
             DA   FD + ++ +++WN + + Y  S    E +++F  M      PN F+ +S+I  
Sbjct: 61  FGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINV 120

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTW 383
           C  L     G+++H  +++ G D +   ANAL+DMYAK G + D+  +F E++  D+V+W
Sbjct: 121 CTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSW 180

Query: 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND 443
            +++ G   H +   A+EL  EM KSG+ P+     + L AC+   L + G +   S+  
Sbjct: 181 NAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIK 240

Query: 444 YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
            ++  +  +   ++D+  +   + +A  + K MP + D   W  ++
Sbjct: 241 MDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMP-ERDMIAWNAVI 285


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/580 (36%), Positives = 332/580 (57%), Gaps = 41/580 (7%)

Query: 60  GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119
           G ++EA  LF  MPERD  SW  M++G+   +   +A    V+M   +   N ++  S L
Sbjct: 99  GALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSAL 158

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179
            AC G+  LS    +HG+  K      +Y+ ++L+D+Y+ C + + +A+  F+DM  +N 
Sbjct: 159 SACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRV-VASAQRAFDDMDVRNI 217

Query: 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAA 239
           VSW +LIT Y  +G     L VF  M+  G+E +  + +    ACAS   +  G  IHA 
Sbjct: 218 VSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHAR 277

Query: 240 VIKHG-FGSNLPVMNSILDMYCRFDCLSDANQYFDEM----------------------- 275
           V+KH  + ++L + N+++DMY +   +++A   FD M                       
Sbjct: 278 VMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKA 337

Query: 276 --------TEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACAT 326
                    E+++++WN +IAGY ++G +E  + +F  +K E   P  +TF +++ ACA 
Sbjct: 338 ARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACAN 397

Query: 327 LAALSCGQQVHAGIVRRGL------DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDL 380
           LA L  G+Q H  I++ G       D ++ + N+LIDMY KCG + D + +F  M +RD 
Sbjct: 398 LADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDN 457

Query: 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS 440
           V+W +M++GY  +G+G EA+E+F EM+ SG RPD +  + VL+ACSHAGLV+EG  YF+S
Sbjct: 458 VSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQS 517

Query: 441 MN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN 499
           M  ++ + P K+ Y C+VDLLGRAG + EA  LI++MP +PD  VWG LL ACK H    
Sbjct: 518 MTIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAACKVHGNIT 577

Query: 500 LGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVR 559
           LGK  A R+L++ P   G Y++LSN+YA  G+W++  + RK MR MG  K+ G SWI ++
Sbjct: 578 LGKYVAERLLEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQMGVIKQPGCSWISIQ 637

Query: 560 DKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDID 599
             +  F+  DK   H + +Y +L++L   M    Y P+ D
Sbjct: 638 SHLHVFMVKDKRHPHKKDIYLILKILTEQMKRVGYVPEAD 677



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 109/393 (27%), Positives = 198/393 (50%), Gaps = 42/393 (10%)

Query: 103 MVRNEVNPNAFTLSS----VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA 158
           +VR  V   +F  SS    +L  C   KS+  A LVH   IK      I+++N L+DVY 
Sbjct: 6   LVRKVVGDLSFLDSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYG 65

Query: 159 TCCISMDNARLVFNDMKWKN-------------------------------DVSWTTLIT 187
            C   +++AR VF+ M+ +N                                 SW  +++
Sbjct: 66  KCGF-LEDARKVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVS 124

Query: 188 GYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGS 247
           G+A        L    +M  E   +N YSF  A+ ACA    +S G  IH  + K  +  
Sbjct: 125 GFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSL 184

Query: 248 NLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMK 306
           ++ + ++++DMY +   ++ A + FD+M  +++++WN++I  YE++G + + L +F +M 
Sbjct: 185 DVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMM 244

Query: 307 SERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG-LDGNLALANALIDMYAKCGNI 365
           +    P+  T  S+ +ACA+L+A+  G Q+HA +++      +L L NAL+DMYAKC  +
Sbjct: 245 NCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRV 304

Query: 366 SDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTAC 425
           ++++ +F  M  RD+V+ TSM+ GY      K A  +F  M++  V    + + A++   
Sbjct: 305 NEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNV----VSWNALIAGY 360

Query: 426 SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVD 458
           +  G  +E ++ F  +   ++ P    +G +++
Sbjct: 361 TQNGENEEAVRLFLLLKRESIWPTHYTFGNLLN 393



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 98/388 (25%), Positives = 178/388 (45%), Gaps = 40/388 (10%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + + L+  Y    ++  A+  FD+M  R++VSW  +I  Y       +A  VFV M+   
Sbjct: 188 MGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCG 247

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIK-EGLEGSIYVENSLMDVYATC------ 160
           + P+  TL+SV  AC  + ++     +H   +K +     + + N+L+D+YA C      
Sbjct: 248 IEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEA 307

Query: 161 ------------------------CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGY 196
                                     S+  ARL+F++M  +N VSW  LI GY  +G   
Sbjct: 308 RLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENE 367

Query: 197 GGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGF------GSNLP 250
             + +F  +  E +    Y+F   + ACA+   +  G+  H  ++KHGF       S++ 
Sbjct: 368 EAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIF 427

Query: 251 VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSER 309
           V NS++DMY +   + D    F+ M E+D ++WN +I GY ++G  +E L +F +M    
Sbjct: 428 VGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSG 487

Query: 310 FSPNCFTFTSIIAACATLAALSCGQ-QVHAGIVRRGLDGNLALANALIDMYAKCGNISDS 368
             P+  T   +++AC+    +  G+    +  +  GL         ++D+  + G + ++
Sbjct: 488 ERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEA 547

Query: 369 QKIFSEMS-DRDLVTWTSMMIGYGAHGH 395
             +   M  + D V W S++     HG+
Sbjct: 548 NNLIQTMPMEPDAVVWGSLLAACKVHGN 575



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 149/301 (49%), Gaps = 33/301 (10%)

Query: 212 MNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQY 271
           ++   F+  +  C  +  V   +L+HA +IK  F S + + N ++D+Y +   L DA + 
Sbjct: 17  LDSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKV 76

Query: 272 FDEMTEKDLITWNTIIAGYEKSGS-SECLNMFS--------------------------- 303
           FD M +++  +WN ++    K G+  E LN+F                            
Sbjct: 77  FDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEAL 136

Query: 304 ----KMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMY 359
                M SE F  N ++F S ++ACA L  LS G Q+H  I +     ++ + +AL+DMY
Sbjct: 137 RFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMY 196

Query: 360 AKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFM 419
           +KC  ++ +Q+ F +M  R++V+W S++  Y  +G   +A+E+F  M+  G+ PD I   
Sbjct: 197 SKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLA 256

Query: 420 AVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG-CVVDLLGRAGRVKEAYELIKSMPF 478
           +V +AC+    + EGL+    +  ++   N  + G  +VD+  +  RV EA  +   MP 
Sbjct: 257 SVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPL 316

Query: 479 K 479
           +
Sbjct: 317 R 317



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 137/266 (51%), Gaps = 15/266 (5%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P    +  T+++  Y     ++ AR +F  M ER+VVSW  +IAGYT    + +A  +F
Sbjct: 314 MPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLF 373

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLS------NAALVHGMAIKEGLEGSIYVENSLM 154
           + + R  + P  +T  ++L AC  +  L          L HG   K G +  I+V NSL+
Sbjct: 374 LLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLI 433

Query: 155 DVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP 214
           D+Y  C + +++ RLVF  M  +++VSW  +I GYA +G G   L +F+EML+ G   + 
Sbjct: 434 DMYMKCGL-VEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDH 492

Query: 215 YSFSIAVRACASTGWVSFGK-LIHAAVIKHGFGSNLPVMNS---ILDMYCRFDCLSDANQ 270
            +    + AC+  G V  G+    +  I+HG    +PV +    ++D+  R  CL +AN 
Sbjct: 493 VTMIGVLSACSHAGLVEEGRCYFQSMTIEHGL---VPVKDHYTCMVDLLGRAGCLDEANN 549

Query: 271 YFDEM-TEKDLITWNTIIAGYEKSGS 295
               M  E D + W +++A  +  G+
Sbjct: 550 LIQTMPMEPDAVVWGSLLAACKVHGN 575


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/543 (36%), Positives = 323/543 (59%), Gaps = 3/543 (0%)

Query: 62  IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121
           + EAR +FD MPERD+VSW  ++AGY+       A  +   M    + P+  T+ SVL A
Sbjct: 186 VHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPA 245

Query: 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS 181
              ++ +     +HG A++ G +  + +  +L+D+YA C  S+  ARL+F+ M  +N VS
Sbjct: 246 VSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCG-SLKTARLLFDGMLERNVVS 304

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           W ++I  Y  + N    + +F++ML EGV+    S   A+ ACA  G +  G+ IH   +
Sbjct: 305 WNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSV 364

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLN 300
           +     N+ V+NS++ MYC+   +  A   F ++  + +++WN +I G+ ++G   E LN
Sbjct: 365 ELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALN 424

Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360
            FS+M++    P+ FT+ S+I A A L+     + +H  ++R  LD N+ +  AL+DMYA
Sbjct: 425 YFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYA 484

Query: 361 KCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420
           KCG I  ++ IF  MS+R + TW +M+ GYG HG GK A+ELF+EM K  +RP+ + F++
Sbjct: 485 KCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLS 544

Query: 421 VLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
           V++ACSH+GLV+ GLK F  M + Y++ P+ + YG +VDLLGRAGR+ EA++ I  MP K
Sbjct: 545 VISACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVK 604

Query: 480 PDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFR 539
           P  +V+G +LGAC+ H+  N  +  A R+ +L P   G +++L+NIY A   WE+  + R
Sbjct: 605 PAVNVYGAMLGACQIHKNVNFAEKVAERLFELNPEDGGYHVLLANIYRAASMWEKVGQVR 664

Query: 540 KIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDID 599
             M   G +K  G S +E++++V  F +       ++ +Y  LE LI  + E  Y PD +
Sbjct: 665 VSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPSSKKIYAFLEKLICQIKEAGYVPDTN 724

Query: 600 CLI 602
            ++
Sbjct: 725 LIL 727



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 128/488 (26%), Positives = 237/488 (48%), Gaps = 19/488 (3%)

Query: 39  PLIPKG----PSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHN 94
           PLI K       +  T L+  +   G ++EA  +F+ + ++  V +  M+ G+   +  +
Sbjct: 58  PLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLD 117

Query: 95  QAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLM 154
           +A   FV M  +EV P  +  + +LK C     L     +HG+ +K G    ++    L 
Sbjct: 118 KALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLE 177

Query: 155 DVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP 214
           ++YA  C  +  AR VF+ M  ++ VSW T++ GY+ +G     L +   M  E ++ + 
Sbjct: 178 NMYAK-CRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSF 236

Query: 215 YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE 274
            +    + A ++   +  GK IH   ++ GF S + +  +++DMY +   L  A   FD 
Sbjct: 237 ITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDG 296

Query: 275 MTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG 333
           M E+++++WN++I  Y +     E + +F KM  E   P   +    + ACA L  L  G
Sbjct: 297 MLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERG 356

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
           + +H   V   LD N+++ N+LI MY KC  +  +  +F ++  R +V+W +M++G+  +
Sbjct: 357 RFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQN 416

Query: 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYN-VNPNKEI 452
           G   EA+  F +M    V+PD   +++V+TA +   +     K+   +   N ++ N  +
Sbjct: 417 GRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHA-KWIHGVVMRNCLDKNVFV 475

Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD-- 510
              +VD+  + G +  A  LI  M  +   + W  ++     H    +GK AAL + +  
Sbjct: 476 TTALVDMYAKCGAIMIA-RLIFDMMSERHVTTWNAMIDGYGTH---GIGK-AALELFEEM 530

Query: 511 ----LKPN 514
               ++PN
Sbjct: 531 QKGTIRPN 538



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 114/420 (27%), Positives = 211/420 (50%), Gaps = 9/420 (2%)

Query: 105 RNEVNPNAFTLSS--VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           RN +  N +   +  +L+ C  +K L +   +  +  K GL      +  L+ ++     
Sbjct: 28  RNYIPANVYEHPAALLLERCSSLKELRH---ILPLIFKNGLYQEHLFQTKLVSLFCRYG- 83

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
           S+D A  VF  +  K +V + T++ G+A   +    L  F  M  + VE   Y+F+  ++
Sbjct: 84  SVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLK 143

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
            C     +  GK IH  ++K GF  +L  M  + +MY +   + +A + FD M E+DL++
Sbjct: 144 VCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVS 203

Query: 283 WNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           WNTI+AGY ++G +   L M + M  E   P+  T  S++ A + L  +  G+++H   +
Sbjct: 204 WNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAM 263

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           R G D  + +A AL+DMYAKCG++  ++ +F  M +R++V+W SM+  Y  + + KEA+ 
Sbjct: 264 RAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMV 323

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461
           +F +M+  GV+P  +  M  L AC+  G ++ G    K   +  ++ N  +   ++ +  
Sbjct: 324 IFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYC 383

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR-LPNLGKLAALRVLDLKPNMMGTYI 520
           +   V  A  +   +  +   S    +LG  +  R +  L   + ++   +KP+   TY+
Sbjct: 384 KCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTF-TYV 442



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 169/355 (47%), Gaps = 25/355 (7%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +AT L+  Y   G ++ AR LFD M ER+VVSW  MI  Y       +A  +F +M+   
Sbjct: 273 IATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEG 332

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V P   ++   L AC  +  L     +H ++++  L+ ++ V NSL+ +Y   C  +D A
Sbjct: 333 VKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCK-CKEVDTA 391

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             +F  ++ +  VSW  +I G+A +G     L  F +M    V+ + +++   + A A  
Sbjct: 392 ASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAEL 451

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
                 K IH  V+++    N+ V  +++DMY +   +  A   FD M+E+ + TWN +I
Sbjct: 452 SITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMI 511

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL- 345
            GY   G     L +F +M+     PN  TF S+I+AC+           H+G+V  GL 
Sbjct: 512 DGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACS-----------HSGLVEAGLK 560

Query: 346 -----------DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIG 389
                      + ++    A++D+  + G ++++     +M  +  V     M+G
Sbjct: 561 CFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLG 615


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/560 (37%), Positives = 335/560 (59%), Gaps = 3/560 (0%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108
           A  L+  Y   G  E A  +F E+P+ D+VSW  +IAG      ++ A  +  +M    V
Sbjct: 226 ANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRV 285

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
            P+ FTLSS LKAC  +  +     +H   +K  +E   +V   L+D+Y+ C + + +AR
Sbjct: 286 APSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGL-LQDAR 344

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
           +VF+ M  K+ + W ++I+GY++ G     + +F  M  EG+E N  + S  +++ A + 
Sbjct: 345 MVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQ 404

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
              F + +H   IK G+  +  V NS+LD Y +   L DA + F+    +DL+ + ++I 
Sbjct: 405 ANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMIT 464

Query: 289 GYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
            Y + G   E L M+ +M+     P+ F F+S+  ACA L+A   G+Q+H  +++ GL  
Sbjct: 465 AYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLS 524

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           ++   N+L++MYAKCG+I D+  IF+E+S R +V+W++M+ G   HGHG++A++LF +M+
Sbjct: 525 DVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQML 584

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRV 466
           K+G+ P+ I  ++VL+AC+HAGLV E  ++F  M   + + P +E Y C+VD+LGR GR+
Sbjct: 585 KNGILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRL 644

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            EA  L+K MPF+   +VWG LLGA + H+   LG+ AA  +L L+P   GT+I+L+NIY
Sbjct: 645 DEAMVLVKEMPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPEKSGTHILLANIY 704

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           A+ G W+  AK R+ M+    KKE GMSWIE++DKV  FI  D+    ++ +Y  L+ L 
Sbjct: 705 ASTGMWDNVAKVRRSMKNSLVKKEPGMSWIELKDKVYTFIVGDRSHPRSKEIYVKLDDLR 764

Query: 587 RHMNETAYEPDIDCLIHDLE 606
             +    Y P I+  +HD+E
Sbjct: 765 ERLTSAGYVPMIETDLHDVE 784



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 125/472 (26%), Positives = 222/472 (47%), Gaps = 43/472 (9%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF------------------------ 100
           AR L  +  E D+VSW+ +I+GY       +A   +                        
Sbjct: 101 ARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSL 160

Query: 101 ----------------VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLE 144
                            EM+   ++PN F+LS+VL AC G++  +    VHG  IK G +
Sbjct: 161 TRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYD 220

Query: 145 GSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKE 204
              +  N+L+D+YA      + A  VF ++   + VSW  +I G          L +  +
Sbjct: 221 SDPFSANALLDMYAKSGCP-EAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGK 279

Query: 205 MLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264
           M    V  + ++ S A++ACA+ G V  G+ +H+A++K     +  V   ++DMY +   
Sbjct: 280 MGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGL 339

Query: 265 LSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAA 323
           L DA   FD M  KD+I WN+II+GY   G   E +++F+ M  E    N  T ++I+ +
Sbjct: 340 LQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKS 399

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTW 383
            A   A    +QVH   ++ G   +  +AN+L+D Y KC  + D+ K+F      DLV +
Sbjct: 400 TAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAY 459

Query: 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND 443
           TSM+  Y  +G G+EA++++  M    ++PD  +F ++  AC++    ++G +    +  
Sbjct: 460 TSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLK 519

Query: 444 YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
             +  +      +V++  + G + +A  +   + ++   S W  ++G   +H
Sbjct: 520 CGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVS-WSAMIGGLAQH 570



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 102/365 (27%), Positives = 187/365 (51%), Gaps = 9/365 (2%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S +   LI  Y   GL+++AR +FD MP +DV+ W  +I+GY++     +A ++F  M +
Sbjct: 324 SFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYK 383

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             +  N  TLS++LK+  G ++      VH ++IK G +   YV NSL+D Y  CC+  D
Sbjct: 384 EGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLED 443

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A+ VF     ++ V++T++IT Y+  G G   L ++  M    ++ + + FS    ACA
Sbjct: 444 AAK-VFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACA 502

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           +      GK IH  V+K G  S++   NS+++MY +   + DA+  F+E++ + +++W+ 
Sbjct: 503 NLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSA 562

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR- 343
           +I G  + G   + L +F +M      PN  T  S+++AC   A L    +   G++ + 
Sbjct: 563 MIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSAC-NHAGLVTEARRFFGLMEKL 621

Query: 344 -GLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGH---GKE 398
            G+         ++D+  + G + ++  +  EM        W +++     H +   G+ 
Sbjct: 622 FGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGAARIHKNIELGRH 681

Query: 399 AIELF 403
           A E+ 
Sbjct: 682 AAEML 686



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 117/462 (25%), Positives = 206/462 (44%), Gaps = 90/462 (19%)

Query: 154 MDVYATC-CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEM 212
           +++Y+ C C  +  AR +  D    + VSW+ LI+GY  +G G   L  + EM L G + 
Sbjct: 89  VNLYSKCQCFRV--ARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKG 146

Query: 213 NPYSFSIAVRACASTGWVSFGKLIHAA--------------------------------- 239
           N ++FS  ++ C+ T  +  GK IH                                   
Sbjct: 147 NEFTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENY 206

Query: 240 -------VIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG--- 289
                  +IK G+ S+    N++LDMY +  C   A   F E+ + D+++WN +IAG   
Sbjct: 207 GMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVL 266

Query: 290 YEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
           +EK+  +  L +  KM S R +P+ FT +S + ACA +  +  G+Q+H+ +++  ++ + 
Sbjct: 267 HEKNDLA--LKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDS 324

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
            +   LIDMY+KCG + D++ +F  M  +D++ W S++ GY   G+  EA+ LF  M K 
Sbjct: 325 FVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKE 384

Query: 410 GVRPDRIVFMAVLTACS-----------HAGLVDEGLKY----FKSMND----------- 443
           G+  ++     +L + +           H   +  G +Y      S+ D           
Sbjct: 385 GLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDA 444

Query: 444 ---YNVNPNKEI--YGCVVDLLGRAGRVKEA---YELIKSMPFKPDESVWGPLLGACKEH 495
              + V P +++  Y  ++    + G  +EA   Y  ++    KPD  ++  L  AC   
Sbjct: 445 AKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANL 504

Query: 496 RLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAK 537
                GK   + VL           +LS+++A       +AK
Sbjct: 505 SAYEQGKQIHVHVLKCG--------LLSDVFAGNSLVNMYAK 538



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 53/226 (23%)

Query: 330 LSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIG 389
           +S G  +HA I+R G    L L N L+++Y+KC     ++K+  + S+ DLV+W++++ G
Sbjct: 66  VSSGMAIHARIIRLG---LLGLRNRLVNLYSKCQCFRVARKLVIDSSEPDLVSWSALISG 122

Query: 390 YGAHGHGKEA----------------------------------------IELFDEMVKS 409
           Y  +G G+EA                                        + L  EM+ +
Sbjct: 123 YVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQIHRVALVTEMIST 182

Query: 410 GVRPDRIVFMAVLTACSHAGLVDE--GLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
           G+ P+      VL AC  AGL DE  G+K    +     + +      ++D+  ++G  +
Sbjct: 183 GISPNEFSLSTVLNAC--AGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPE 240

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHR-----LPNLGKLAALRV 508
            A  +   +P KPD   W  ++  C  H      L  LGK+ + RV
Sbjct: 241 AAIAVFYEIP-KPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRV 285


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/552 (36%), Positives = 330/552 (59%), Gaps = 4/552 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +  +L+  Y     ++ AR +FDEM ERDV+SW  +I GY S     +  +VFV+M+ + 
Sbjct: 232 VGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSG 291

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           +  +  T+ SV   C   + +S    VH   +K          N+L+D+Y+ C   +D+A
Sbjct: 292 IEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCG-DLDSA 350

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           ++VF +M  ++ VS+T++I GYA  G     + +F+EM  EG+  + Y+ +  +  CA  
Sbjct: 351 KVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARN 410

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  GK +H  + ++  G ++ V N+++DMY +   + +A   F EM  KD+I+WNT+I
Sbjct: 411 RLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVI 470

Query: 288 AGYEKSG-SSECLNMFSKMKSE-RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
            GY K+  ++E L++F+ +  E RFSP+  T   ++ ACA+L+A   G+++H  I+R G 
Sbjct: 471 GGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGY 530

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             +  +AN+L+DMYAKCG +  ++ +F +++ +DLV+WT M+ GYG HG GKEAI LF++
Sbjct: 531 FSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQ 590

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAG 464
           M ++G+ PD I F+++L ACSH+GLVDEG ++F  M ++  + P  E Y C+VD+L R G
Sbjct: 591 MRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTG 650

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
            + +AY  I++MP  PD ++WG LL  C+ H    L +  A +V +L+P   G Y++++N
Sbjct: 651 NLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVAEKVFELEPENTGYYVLMAN 710

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           IYA   KWEE  + RK +   G +K  G SWIE++ +V  F+A D     T+ +   L  
Sbjct: 711 IYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETEKIEAFLRG 770

Query: 585 LIRHMNETAYEP 596
           +   M E  Y P
Sbjct: 771 VRARMIEEGYSP 782



 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 136/505 (26%), Positives = 258/505 (51%), Gaps = 13/505 (2%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S L + L   Y + G ++EA  +FD++     + W +++         + +  +F +M+ 
Sbjct: 129 SNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMS 188

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           + V  +++T S V K+   ++S++    +HG  +K G      V NSL+  Y      +D
Sbjct: 189 SGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLK-NHRVD 247

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +AR VF++M  ++ +SW ++I GY  +G    GL VF +ML  G+E++  +       CA
Sbjct: 248 SARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCA 307

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
            +  +S G+ +H   +K  F       N++LDMY +   L  A   F EM+ + ++++ +
Sbjct: 308 DSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTS 367

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +IAGY + G + E + +F +M+ E  SP+ +T T+++  CA    L  G++VH  I    
Sbjct: 368 MIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKEND 427

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           +  ++ ++NAL+DMYAKCG++ +++ +FSEM  +D+++W +++ GY  + +  EA+ LF+
Sbjct: 428 MGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFN 487

Query: 405 -EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
             +V+    PD      VL AC+     D+G +    +       ++ +   +VD+  + 
Sbjct: 488 LLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKC 547

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLA-----ALRVLDLKPNMMGT 518
           G +  A  L   +  K D   W  ++     H     GK A      +R   ++P+ + +
Sbjct: 548 GALLLARLLFDDITSK-DLVSWTVMIAGYGMH---GFGKEAIALFNQMRQAGIEPDEI-S 602

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMR 543
           ++ L    +  G  +E  +F  IMR
Sbjct: 603 FVSLLYACSHSGLVDEGWRFFNIMR 627



 Score =  208 bits (530), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 126/386 (32%), Positives = 209/386 (54%), Gaps = 5/386 (1%)

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           +++P   TL SVL+ C   KSL +   V       G      + + L  +Y T C  +  
Sbjct: 91  DIDPR--TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMY-TNCGDLKE 147

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  VF+ +K +  + W  L+   A SG+  G +G+FK+M+  GVEM+ Y+FS   ++ +S
Sbjct: 148 ASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSS 207

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              V+ G+ +H  ++K GFG    V NS++  Y +   +  A + FDEMTE+D+I+WN+I
Sbjct: 208 LRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSI 267

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I GY  +G +E  L++F +M       +  T  S+ A CA    +S G+ VH   V+   
Sbjct: 268 INGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACF 327

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
                  N L+DMY+KCG++  ++ +F EMS R +V++TSM+ GY   G   EA++LF+E
Sbjct: 328 SREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEE 387

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M + G+ PD     AVL  C+   L+DEG +  + + + ++  +  +   ++D+  + G 
Sbjct: 388 MEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGS 447

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGA 491
           ++EA EL+ S     D   W  ++G 
Sbjct: 448 MREA-ELVFSEMRVKDIISWNTVIGG 472



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 170/364 (46%), Gaps = 44/364 (12%)

Query: 211 EMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQ 270
           +++P +    ++ CA +  +  GK +   +  +GF  +  + + +  MY     L +A++
Sbjct: 91  DIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASR 150

Query: 271 YFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAA 329
            FD++  +  + WN ++    KSG  S  + +F KM S     + +TF+ +  + ++L +
Sbjct: 151 VFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRS 210

Query: 330 LSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIG 389
           ++ G+Q+H  I++ G     ++ N+L+  Y K   +  ++K+F EM++RD+++W S++ G
Sbjct: 211 VNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIING 270

Query: 390 YGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDE-------GLKYFKSMN 442
           Y ++G  ++ + +F +M+ SG+  D    ++V   C+ + L+         G+K   S  
Sbjct: 271 YVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSRE 330

Query: 443 DYNVNPNKEIYGCVVDL------------------------LGRAGRVKEAYELIKSMP- 477
           D   N   ++Y    DL                          R G   EA +L + M  
Sbjct: 331 DRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE 390

Query: 478 --FKPDESVWGPLLGACKEHRLPNLGKLAALRVLD-LKPNMMGTYIILSN----IYAAEG 530
               PD      +L  C  +RL + GK    RV + +K N MG  I +SN    +YA  G
Sbjct: 391 EGISPDVYTVTAVLNCCARNRLLDEGK----RVHEWIKENDMGFDIFVSNALMDMYAKCG 446

Query: 531 KWEE 534
              E
Sbjct: 447 SMRE 450


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/560 (36%), Positives = 338/560 (60%), Gaps = 5/560 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+  Y     IE+AR LFD+M ERD+V+WTVMI GY      N++  +F +M    V P+
Sbjct: 71  LVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPD 130

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNARLV 170
              + +V+ AC  + ++  A ++     ++  +  + +  +++D+YA C C+  ++AR +
Sbjct: 131 KVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCV--ESAREI 188

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F+ M+ KN +SW+ +I  Y + G G   L +F+ ML  G+  +  + +  + AC+    +
Sbjct: 189 FDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNL 248

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
             G+LIH  V K G   +  V  +++DMY +   + DA   FD+M E+DL+TW  +I GY
Sbjct: 249 QMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGY 308

Query: 291 EKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
            + G++ E L +F KM+ E   P+     +++ ACA L A+   + +   I R+    ++
Sbjct: 309 AECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDV 368

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
            L  A+IDM+AKCG +  +++IF  M ++++++W++M+  YG HG G++A++LF  M++S
Sbjct: 369 ILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRS 428

Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKE 468
           G+ P++I  +++L ACSHAGLV+EGL++F  M  DY+V  + + Y CVVDLLGRAGR+ E
Sbjct: 429 GILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDE 488

Query: 469 AYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA 528
           A +LI+SM  + DE +WG  LGAC+ H+   L + AA  +L+L+P   G YI+LSNIYA 
Sbjct: 489 ALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYAN 548

Query: 529 EGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRH 588
            G+WE+ AK R +M     KK  G +WIEV +K   F   D     ++ +Y +L+ L   
Sbjct: 549 AGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNK 608

Query: 589 MNETAYEPDIDCLIHDLEGE 608
           +    Y PD + ++HD++ E
Sbjct: 609 LELVGYVPDTNFVLHDVDEE 628



 Score =  232 bits (591), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 145/473 (30%), Positives = 253/473 (53%), Gaps = 26/473 (5%)

Query: 83  MIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG 142
           M+ G+     +   +  F E++R    P+ +TL  V++AC+ +K+L    L+H +  K G
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 143 LEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVF 202
           L+   +V  +L+D+Y   C  +++AR +F+ M+ ++ V+WT +I GYA  G     L +F
Sbjct: 61  LDLDHFVCAALVDMYVK-CREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLF 119

Query: 203 KEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRF 262
           ++M  EGV  +  +    V ACA  G +   ++I   + +  F  ++ +  +++DMY + 
Sbjct: 120 EKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKC 179

Query: 263 DCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSII 321
            C+  A + FD M EK++I+W+ +IA Y   G   + L++F  M S    P+  T  S++
Sbjct: 180 GCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLL 239

Query: 322 AACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLV 381
            AC+ L  L  G+ +H  + + GLD +  +  AL+DMY KC  I D++ +F +M +RDLV
Sbjct: 240 YACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLV 299

Query: 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441
           TWT M+ GY   G+  E++ LFD+M + GV PD++  + V+ AC+  G + +     +++
Sbjct: 300 TWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKA----RTI 355

Query: 442 NDYNVNPNKE---IYG-CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
           +DY      +   I G  ++D+  + G V+ A E+   M  K   S W  ++ A   H  
Sbjct: 356 DDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVIS-WSAMIAAYGYH-- 412

Query: 498 PNLGKLAALRVLDLKPNMMGTYI------ILSNIYAAE--GKWEEFAKFRKIM 542
              G+    + LDL P M+ + I      ++S +YA    G  EE  +F  +M
Sbjct: 413 -GQGR----KALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLM 460



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 110/392 (28%), Positives = 194/392 (49%), Gaps = 36/392 (9%)

Query: 12  TFHCHKIPPIIKQSL--QSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLF 69
            F C K+  + K  +    +++   Q D         IL T +I  Y   G +E AR +F
Sbjct: 138 VFACAKLGAMHKARIIDDYIQRKKFQLD--------VILGTAMIDMYAKCGCVESAREIF 189

Query: 70  DEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLS 129
           D M E++V+SW+ MIA Y       +A  +F  M+ + + P+  TL+S+L AC  +K+L 
Sbjct: 190 DRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQ 249

Query: 130 NAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGY 189
              L+H +  K GL+   +V  +L+D+Y   C  +++AR +F+ M  ++ V+WT +I GY
Sbjct: 250 MGRLIHHIVYKFGLDLDHFVCAALVDMYGK-CREIEDARFLFDKMPERDLVTWTVMIGGY 308

Query: 190 AHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNL 249
           A  GN    L +F +M  EGV  +  +    V ACA  G +   + I   + +  F  ++
Sbjct: 309 AECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDV 368

Query: 250 PVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSE 308
            +  +++DM+ +  C+  A + FD M EK++I+W+ +IA Y   G   + L++F  M   
Sbjct: 369 ILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRS 428

Query: 309 RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL------------DGNLALANALI 356
              PN  T  S++ AC+           HAG+V  GL              ++     ++
Sbjct: 429 GILPNKITLVSLLYACS-----------HAGLVEEGLRFFSLMWEDYSVRADVKHYTCVV 477

Query: 357 DMYAKCGNISDSQKIFSEMS-DRDLVTWTSMM 387
           D+  + G + ++ K+   M+ ++D   W + +
Sbjct: 478 DLLGRAGRLDEALKLIESMTVEKDEGLWGAFL 509


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 231/674 (34%), Positives = 354/674 (52%), Gaps = 72/674 (10%)

Query: 6   LLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEA 65
           ++++    H H +  +I    +S +    +     I +   I  T ++  Y   G I  A
Sbjct: 40  IITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVSGYCASGDIALA 99

Query: 66  RTLFDEMP--ERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACK 123
           R++F+E P   RD V +  MI G++  N    A  +F +M      P+ FT +SVL    
Sbjct: 100 RSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLAGLA 159

Query: 124 -GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS---MDNARLVFNDMKWKND 179
             +         H  A+K G      V N+L+ VY+ C  S   + +AR VF+D+  K++
Sbjct: 160 LVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDE 219

Query: 180 VSWTTLITGYAHSG-------------------------NGYGGLGVFKE-------MLL 207
            SWTT++TGY  +G                         +GY   G+++E       M+ 
Sbjct: 220 RSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVS 279

Query: 208 EGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSD 267
            G+E++ +++   +RACA+   +  GK +HA V++    S     NS++ +Y +    ++
Sbjct: 280 SGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRREDFS-FHFDNSLVTLYYKCGKFNE 338

Query: 268 ANQYFDEMTEKDLITWNTIIAGYEKSG--------------------------------S 295
           A   F++M  KDL++WN +++GY  SG                                 
Sbjct: 339 ARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFG 398

Query: 296 SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
            E L +FS MK E F P  + F+  I +CA L A   GQQ HA +V+ G D +L+  NAL
Sbjct: 399 EEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNAL 458

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           I MYAKCG + ++Q++F  M   D V+W +++   G HGHG EA+++++EM+K G+RPDR
Sbjct: 459 ITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDR 518

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
           I F+ VLTACSHAGLVD+G KYF SM   Y + P  + Y  ++DLL R+G+  EA  +I+
Sbjct: 519 ITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESIIE 578

Query: 475 SMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEE 534
           S+PFKP   +W  LL  C+ H    LG +AA ++  L P   GTY++LSN+YAA G+WEE
Sbjct: 579 SLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMYAATGQWEE 638

Query: 535 FAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAY 594
            A+ RK+MR  G KKEV  SWIE+  +V  F+ +D      + VY  L+ L + M    Y
Sbjct: 639 VARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYKYLQDLGKEMRRLGY 698

Query: 595 EPDIDCLIHDLEGE 608
            PD   ++HD+E +
Sbjct: 699 VPDTSFVLHDVESD 712



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 117/485 (24%), Positives = 204/485 (42%), Gaps = 115/485 (23%)

Query: 119 LKACKGMK--SLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW 176
           L+ C  ++  SL  A  VHG  I  G +   ++ N L+DVY      +D AR +F+++  
Sbjct: 19  LRLCLPLRRTSLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSS-ELDYARQLFDEISE 77

Query: 177 KNDVSWTT---------------------------------LITGYAHSGNGYGGLGVFK 203
            + ++ TT                                 +ITG++H+ +GY  + +F 
Sbjct: 78  PDKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFC 137

Query: 204 EMLLEGVEMNPYSFSIAVRACA-----STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDM 258
           +M  EG + + ++++  +   A         V F    HAA +K G G    V N+++ +
Sbjct: 138 KMKHEGFKPDDFTYASVLAGLALVVDDEKQCVQF----HAAALKSGAGYVTSVSNALVSV 193

Query: 259 YCRF----DCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS------------------- 295
           Y R       L  A + FD++ EKD  +W T++ GY K+G                    
Sbjct: 194 YSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVA 253

Query: 296 --------------SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
                          E L M  +M S     + FT+ S+I ACA    L  G+QVHA ++
Sbjct: 254 YNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVL 313

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH------ 395
           RR  D +    N+L+ +Y KCG  ++++ IF +M  +DLV+W +++ GY + GH      
Sbjct: 314 RRE-DFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKL 372

Query: 396 -------------------------GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
                                    G+E ++LF  M + G  P    F   + +C+  G 
Sbjct: 373 IFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGA 432

Query: 431 VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490
              G ++   +     + +      ++ +  + G V+EA ++ ++MP   D   W  L+ 
Sbjct: 433 YCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCL-DSVSWNALIA 491

Query: 491 ACKEH 495
           A  +H
Sbjct: 492 ALGQH 496


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/549 (37%), Positives = 328/549 (59%), Gaps = 5/549 (0%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           A  +FD+MPER++V+WT+MI  +    C   A  +F++M  +   P+ FT SSVL AC  
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI--SMDNARLVFNDMKWKNDVSW 182
           +  L+    +H   I+ GL   + V  SL+D+YA C    S+D++R VF  M   N +SW
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 123

Query: 183 TTLITGYAHSGN-GYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           T +IT YA SG      + +F +M+   +  N +SFS  ++AC +      G+ +++  +
Sbjct: 124 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 183

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS-GSSECLN 300
           K G  S   V NS++ MY R   + DA + FD + EK+L+++N I+ GY K+  S E   
Sbjct: 184 KLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFL 243

Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360
           +F+++       + FTF S+++  A++ A+  G+Q+H  +++ G   N  + NALI MY+
Sbjct: 244 LFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYS 303

Query: 361 KCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420
           +CGNI  + ++F+EM DR++++WTSM+ G+  HG    A+E+F +M+++G +P+ I ++A
Sbjct: 304 RCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVA 363

Query: 421 VLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
           VL+ACSH G++ EG K+F SM  ++ + P  E Y C+VDLLGR+G + EA E I SMP  
Sbjct: 364 VLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLM 423

Query: 480 PDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFR 539
            D  VW  LLGAC+ H    LG+ AA  +L+ +P+    YI+LSN++A+ G+W++  K R
Sbjct: 424 ADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIR 483

Query: 540 KIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDID 599
           K M+     KE G SWIEV ++V  F   +        +Y  L+ L   + E  Y PD D
Sbjct: 484 KSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTD 543

Query: 600 CLIHDLEGE 608
            ++HD+E E
Sbjct: 544 FVLHDIEEE 552



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/395 (28%), Positives = 209/395 (52%), Gaps = 12/395 (3%)

Query: 59  EGLIEEARTLFDEMPERDVVSWTVMIAGYT-SFNCHNQAWTVFVEMVRNEVNPNAFTLSS 117
           +G ++++R +F++MPE +V+SWT +I  Y  S  C  +A  +F +M+   + PN F+ SS
Sbjct: 102 DGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSS 161

Query: 118 VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK 177
           VLKAC  +        V+  A+K G+     V NSL+ +YA     M++AR  F+ +  K
Sbjct: 162 VLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSG-RMEDARKAFDILFEK 220

Query: 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIH 237
           N VS+  ++ GYA +        +F E+   G+ ++ ++F+  +   AS G +  G+ IH
Sbjct: 221 NLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIH 280

Query: 238 AAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SS 296
             ++K G+ SN  + N+++ MY R   +  A Q F+EM ++++I+W ++I G+ K G ++
Sbjct: 281 GRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFAT 340

Query: 297 ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR-RGLDGNLALANAL 355
             L MF KM      PN  T+ ++++AC+ +  +S GQ+    + +  G+   +     +
Sbjct: 341 RALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACM 400

Query: 356 IDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGH---GKEAIELFDEMVKSGV 411
           +D+  + G + ++ +  + M    D + W +++     HG+   G+ A E+  E      
Sbjct: 401 VDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDD- 459

Query: 412 RPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV 446
            P   + ++ L A   AG   + +K  KSM + N+
Sbjct: 460 -PAAYILLSNLHAS--AGQWKDVVKIRKSMKERNL 491



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 144/282 (51%), Gaps = 5/282 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +  +LI  Y   G +E+AR  FD + E+++VS+  ++ GY       +A+ +F E+    
Sbjct: 193 VGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTG 252

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           +  +AFT +S+L     + ++     +HG  +K G + +  + N+L+ +Y+ C  +++ A
Sbjct: 253 IGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCG-NIEAA 311

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             VFN+M+ +N +SWT++ITG+A  G     L +F +ML  G + N  ++   + AC+  
Sbjct: 312 FQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHV 371

Query: 228 GWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLITWNT 285
           G +S G K  ++   +HG    +     ++D+  R   L +A ++ + M    D + W T
Sbjct: 372 GMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRT 431

Query: 286 IIAGYEKSGSSECLNMFSKM--KSERFSPNCFTFTSIIAACA 325
           ++      G++E     ++M  + E   P  +   S + A A
Sbjct: 432 LLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASA 473



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 85/198 (42%), Gaps = 24/198 (12%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           K    +   LI  Y   G IE A  +F+EM +R+V+SWT MI G+       +A  +F +
Sbjct: 289 KSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHK 348

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLE--GSIYVENSL---MDVY 157
           M+     PN  T  +VL AC            H   I EG +   S+Y E+ +   M+ Y
Sbjct: 349 MLETGTKPNEITYVAVLSACS-----------HVGMISEGQKHFNSMYKEHGIVPRMEHY 397

Query: 158 ATCCISMDNARLVFNDMKWKNDVS-------WTTLITGYAHSGNGYGGLGVFKEMLLEGV 210
           A     +  + L+   M++ N +        W TL+      GN   G     EM+LE  
Sbjct: 398 ACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHA-AEMILEQE 456

Query: 211 EMNPYSFSIAVRACASTG 228
             +P ++ +     AS G
Sbjct: 457 PDDPAAYILLSNLHASAG 474


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/602 (34%), Positives = 336/602 (55%), Gaps = 39/602 (6%)

Query: 45  PSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
           P  LA   IK Y + G ++ AR LFD++P+ D+ +WT++I+  T      +A   + +  
Sbjct: 10  PPHLALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFR 69

Query: 105 -RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
            +N V P+   L SV KAC  ++ + NA  VH  AI+ G    + + N+L+D+Y  C  S
Sbjct: 70  HKNCVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCS 129

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
            + ARLVF  M +++ +SWT++ + Y + G     LG F++M L G   N  + S  + A
Sbjct: 130 -EGARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPA 188

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C     +  G+ +H  V+++G G N+ V +++++MY     +  A   FD M+ +D ++W
Sbjct: 189 CTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSW 248

Query: 284 NTIIAGY------------------------------------EKSGSSECLNMFSKMKS 307
           N +I  Y                                    +   + + L + S+M++
Sbjct: 249 NVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQN 308

Query: 308 ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISD 367
             F PN  T TS++ AC  L +L  G+Q+H  I R     +L    AL+ MYAKCG++  
Sbjct: 309 SGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLEL 368

Query: 368 SQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH 427
           S+++FS M+ RD V+W +M+I    HG+G+EA+ LF EMV SGVRP+ + F  VL+ CSH
Sbjct: 369 SRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSH 428

Query: 428 AGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWG 486
           + LVDEGL  F SM+ D++V P+ + + C+VD+L RAGR++EAYE IK MP +P    WG
Sbjct: 429 SRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWG 488

Query: 487 PLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546
            LLG C+ ++   LG++AA R+ +++ +  G Y++LSNI  +   W E ++ RK+MR  G
Sbjct: 489 ALLGGCRVYKNVELGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRG 548

Query: 547 SKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
             K  G SWI+VR++V  F+  DK    +  +Y  L+ +   M    Y P+ D ++ D++
Sbjct: 549 VTKNPGCSWIQVRNRVHTFVVGDKSNDQSDEIYRFLDYMGEKMRIAGYLPNTDFVLQDVD 608

Query: 607 GE 608
            E
Sbjct: 609 QE 610



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 122/283 (43%), Gaps = 38/283 (13%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAG----------------- 86
           G   +++ L+  Y     I +A+ +FD M  RD VSW V+I                   
Sbjct: 212 GNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRM 271

Query: 87  --------YTSFNC----------HNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSL 128
                   Y S+N             +A  V   M  +   PN  T++SVL AC  ++SL
Sbjct: 272 MSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESL 331

Query: 129 SNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITG 188
                +HG   +      +    +L+ +YA C   ++ +R VF+ M  ++ VSW T+I  
Sbjct: 332 RGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCG-DLELSRRVFSMMTKRDTVSWNTMIIA 390

Query: 189 YAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIK-HGFGS 247
            +  GNG   L +F+EM+  GV  N  +F+  +  C+ +  V  G LI  ++ + H    
Sbjct: 391 TSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEP 450

Query: 248 NLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLITWNTIIAG 289
           +    + ++D+  R   L +A ++  +M  E     W  ++ G
Sbjct: 451 DADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGG 493


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/549 (37%), Positives = 328/549 (59%), Gaps = 5/549 (0%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           A  +FD+MPER++V+WT+MI  +    C   A  +F++M  +   P+ FT SSVL AC  
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI--SMDNARLVFNDMKWKNDVSW 182
           +  L+    +H   I+ GL   + V  SL+D+YA C    S+D++R VF  M   N +SW
Sbjct: 69  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 128

Query: 183 TTLITGYAHSGN-GYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           T +IT YA SG      + +F +M+   +  N +SFS  ++AC +      G+ +++  +
Sbjct: 129 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 188

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS-GSSECLN 300
           K G  S   V NS++ MY R   + DA + FD + EK+L+++N I+ GY K+  S E   
Sbjct: 189 KLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFL 248

Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360
           +F+++       + FTF S+++  A++ A+  G+Q+H  +++ G   N  + NALI MY+
Sbjct: 249 LFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYS 308

Query: 361 KCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420
           +CGNI  + ++F+EM DR++++WTSM+ G+  HG    A+E+F +M+++G +P+ I ++A
Sbjct: 309 RCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVA 368

Query: 421 VLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
           VL+ACSH G++ EG K+F SM  ++ + P  E Y C+VDLLGR+G + EA E I SMP  
Sbjct: 369 VLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLM 428

Query: 480 PDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFR 539
            D  VW  LLGAC+ H    LG+ AA  +L+ +P+    YI+LSN++A+ G+W++  K R
Sbjct: 429 ADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIR 488

Query: 540 KIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDID 599
           K M+     KE G SWIEV ++V  F   +        +Y  L+ L   + E  Y PD D
Sbjct: 489 KSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTD 548

Query: 600 CLIHDLEGE 608
            ++HD+E E
Sbjct: 549 FVLHDIEEE 557



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/395 (28%), Positives = 209/395 (52%), Gaps = 12/395 (3%)

Query: 59  EGLIEEARTLFDEMPERDVVSWTVMIAGYT-SFNCHNQAWTVFVEMVRNEVNPNAFTLSS 117
           +G ++++R +F++MPE +V+SWT +I  Y  S  C  +A  +F +M+   + PN F+ SS
Sbjct: 107 DGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSS 166

Query: 118 VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK 177
           VLKAC  +        V+  A+K G+     V NSL+ +YA     M++AR  F+ +  K
Sbjct: 167 VLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSG-RMEDARKAFDILFEK 225

Query: 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIH 237
           N VS+  ++ GYA +        +F E+   G+ ++ ++F+  +   AS G +  G+ IH
Sbjct: 226 NLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIH 285

Query: 238 AAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SS 296
             ++K G+ SN  + N+++ MY R   +  A Q F+EM ++++I+W ++I G+ K G ++
Sbjct: 286 GRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFAT 345

Query: 297 ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR-RGLDGNLALANAL 355
             L MF KM      PN  T+ ++++AC+ +  +S GQ+    + +  G+   +     +
Sbjct: 346 RALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACM 405

Query: 356 IDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGH---GKEAIELFDEMVKSGV 411
           +D+  + G + ++ +  + M    D + W +++     HG+   G+ A E+  E      
Sbjct: 406 VDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDD- 464

Query: 412 RPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV 446
            P   + ++ L A   AG   + +K  KSM + N+
Sbjct: 465 -PAAYILLSNLHAS--AGQWKDVVKIRKSMKERNL 496



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 144/282 (51%), Gaps = 5/282 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +  +LI  Y   G +E+AR  FD + E+++VS+  ++ GY       +A+ +F E+    
Sbjct: 198 VGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTG 257

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           +  +AFT +S+L     + ++     +HG  +K G + +  + N+L+ +Y+ C  +++ A
Sbjct: 258 IGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCG-NIEAA 316

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             VFN+M+ +N +SWT++ITG+A  G     L +F +ML  G + N  ++   + AC+  
Sbjct: 317 FQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHV 376

Query: 228 GWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLITWNT 285
           G +S G K  ++   +HG    +     ++D+  R   L +A ++ + M    D + W T
Sbjct: 377 GMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRT 436

Query: 286 IIAGYEKSGSSECLNMFSKM--KSERFSPNCFTFTSIIAACA 325
           ++      G++E     ++M  + E   P  +   S + A A
Sbjct: 437 LLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASA 478



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 85/198 (42%), Gaps = 24/198 (12%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           K    +   LI  Y   G IE A  +F+EM +R+V+SWT MI G+       +A  +F +
Sbjct: 294 KSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHK 353

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLE--GSIYVENSL---MDVY 157
           M+     PN  T  +VL AC            H   I EG +   S+Y E+ +   M+ Y
Sbjct: 354 MLETGTKPNEITYVAVLSACS-----------HVGMISEGQKHFNSMYKEHGIVPRMEHY 402

Query: 158 ATCCISMDNARLVFNDMKWKNDVS-------WTTLITGYAHSGNGYGGLGVFKEMLLEGV 210
           A     +  + L+   M++ N +        W TL+      GN   G     EM+LE  
Sbjct: 403 ACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHA-AEMILEQE 461

Query: 211 EMNPYSFSIAVRACASTG 228
             +P ++ +     AS G
Sbjct: 462 PDDPAAYILLSNLHASAG 479


>gi|297819542|ref|XP_002877654.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323492|gb|EFH53913.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1112

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/553 (39%), Positives = 327/553 (59%), Gaps = 8/553 (1%)

Query: 59  EGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSV 118
           E   E A  +FD+M E +VV+WT+MI          +A   F++MV +    + FTLSSV
Sbjct: 216 ENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSV 275

Query: 119 LKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI--SMDNARLVFNDMKW 176
             AC  +++LS    +H  AI+ GL     VE SL+D+YA C    S+D+ R VF+ M+ 
Sbjct: 276 FSACAELENLSLGRQLHSWAIRSGLADD--VECSLVDMYAKCSADGSVDDCRKVFDRMQD 333

Query: 177 KNDVSWTTLITGYAHSGN-GYGGLGVFKEMLLEG-VEMNPYSFSIAVRACASTGWVSFGK 234
            + +SWT LITGY  + N     + +F EM+ +G VE N ++FS A +AC +      GK
Sbjct: 334 HSVMSWTALITGYMQNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNVSDPRVGK 393

Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG 294
            +     K G  SN  V NS++ M+ + D + DA   F+ ++EK+L+++NT + G  ++ 
Sbjct: 394 QVLGHAFKRGLASNSSVSNSVISMFVKCDRMEDARTAFESLSEKNLVSYNTFLDGTCRNL 453

Query: 295 SSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353
             E    + S++       + FTF S+++  A + +L  G+Q+H+ +++ GL  N  + N
Sbjct: 454 DFEHAFELLSEIAERELGVSAFTFASLLSGVANVGSLRKGEQIHSQVLKLGLSCNQPVCN 513

Query: 354 ALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP 413
           ALI MY+KCG+I  + ++FS M +R++++WTSM+ G+  HG  +  +E F++M K GV+P
Sbjct: 514 ALISMYSKCGSIDTASRVFSLMDNRNVISWTSMITGFAKHGFAERVLETFNQMTKEGVKP 573

Query: 414 DRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
           + + ++A+L+ACSH GLV EG ++F SM  D+ + P  E Y C+VDLL RAG + +A+E 
Sbjct: 574 NEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEF 633

Query: 473 IKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKW 532
           I +MPF+ D  VW   LGAC+ H    LGKLAA ++L+  PN    YI LSNIYA+ GKW
Sbjct: 634 INTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILEFDPNEPAAYIQLSNIYASAGKW 693

Query: 533 EEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNET 592
           EE  + R+ M+     KE G SWIEV DKV  F   D    +   +Y  L+ LI  +   
Sbjct: 694 EESTEMRRKMKERNLVKEGGCSWIEVGDKVHKFYVGDTSHPNAHQIYDELDWLITEIKRC 753

Query: 593 AYEPDIDCLIHDL 605
            Y PD D ++H L
Sbjct: 754 GYVPDTDLVLHKL 766



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 129/490 (26%), Positives = 244/490 (49%), Gaps = 15/490 (3%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMP---ERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           S+L  +LI  Y   G + +A+ +F+ M    +RDVVSW+ M+A + +      A  +FVE
Sbjct: 97  SVLYNSLISLYSKSGDLTKAKDVFETMGRFGKRDVVSWSAMMACFGNNGREFDAIKLFVE 156

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG-LEGSIYVENSLMDVYATCC 161
            +   + PN +  ++V++AC     +    ++ G  +K G  E  + V  SL+D++    
Sbjct: 157 FLEMGLVPNDYCYTAVIRACSNSDFVGVGRVILGFLMKTGHFESDVCVGCSLIDMFVKGE 216

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
            S +NA  VF+ M   N V+WT +IT     G     +  F +M+L G E + ++ S   
Sbjct: 217 NSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVF 276

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMY--CRFD-CLSDANQYFDEMTEK 278
            ACA    +S G+ +H+  I+ G   +  V  S++DMY  C  D  + D  + FD M + 
Sbjct: 277 SACAELENLSLGRQLHSWAIRSGLADD--VECSLVDMYAKCSADGSVDDCRKVFDRMQDH 334

Query: 279 DLITWNTIIAGYEKSG--SSECLNMFSKMKSE-RFSPNCFTFTSIIAACATLAALSCGQQ 335
            +++W  +I GY ++   ++E +N+FS+M ++    PN FTF+S   AC  ++    G+Q
Sbjct: 335 SVMSWTALITGYMQNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNVSDPRVGKQ 394

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
           V     +RGL  N +++N++I M+ KC  + D++  F  +S+++LV++ + + G   +  
Sbjct: 395 VLGHAFKRGLASNSSVSNSVISMFVKCDRMEDARTAFESLSEKNLVSYNTFLDGTCRNLD 454

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455
            + A EL  E+ +  +      F ++L+  ++ G + +G +    +    ++ N+ +   
Sbjct: 455 FEHAFELLSEIAERELGVSAFTFASLLSGVANVGSLRKGEQIHSQVLKLGLSCNQPVCNA 514

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKP 513
           ++ +  + G +  A  +   M  +   S W  ++    +H      L     +    +KP
Sbjct: 515 LISMYSKCGSIDTASRVFSLMDNRNVIS-WTSMITGFAKHGFAERVLETFNQMTKEGVKP 573

Query: 514 NMMGTYIILS 523
           N +    ILS
Sbjct: 574 NEVTYVAILS 583



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/337 (30%), Positives = 187/337 (55%), Gaps = 15/337 (4%)

Query: 103 MVRNEVNP-NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
           M R+ + P ++ T SS+LK+C   +      LVH   I+  +E    + NSL+ +Y+   
Sbjct: 52  MARDGIRPMDSVTFSSLLKSCIRARHFRLGKLVHARLIEFEIEPDSVLYNSLISLYSKSG 111

Query: 162 ISMDNARLVFNDMKW---KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFS 218
             +  A+ VF  M     ++ VSW+ ++  + ++G  +  + +F E L  G+  N Y ++
Sbjct: 112 -DLTKAKDVFETMGRFGKRDVVSWSAMMACFGNNGREFDAIKLFVEFLEMGLVPNDYCYT 170

Query: 219 IAVRACASTGWVSFGKLIHAAVIKHG-FGSNLPVMNSILDMYCRFD-CLSDANQYFDEMT 276
             +RAC+++ +V  G++I   ++K G F S++ V  S++DM+ + +    +A + FD+M+
Sbjct: 171 AVIRACSNSDFVGVGRVILGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMS 230

Query: 277 EKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ 335
           E +++TW  +I    + G   E +  F  M    F  + FT +S+ +ACA L  LS G+Q
Sbjct: 231 ELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGRQ 290

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKC---GNISDSQKIFSEMSDRDLVTWTSMMIGYGA 392
           +H+  +R GL  ++    +L+DMYAKC   G++ D +K+F  M D  +++WT+++ GY  
Sbjct: 291 LHSWAIRSGLADDVEC--SLVDMYAKCSADGSVDDCRKVFDRMQDHSVMSWTALITGYMQ 348

Query: 393 HGH-GKEAIELFDEMVKSG-VRPDRIVFMAVLTACSH 427
           + +   EAI LF EM+  G V P+   F +   AC +
Sbjct: 349 NCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGN 385



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 132/250 (52%), Gaps = 7/250 (2%)

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVE-MNPYSFSIAVRACASTGWVSFGKLIHAAVIKH 243
           LI  + ++G+  G +     M  +G+  M+  +FS  +++C        GKL+HA +I+ 
Sbjct: 32  LILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARHFRLGKLVHARLIEF 91

Query: 244 GFGSNLPVMNSILDMYCRFDCLSDANQYFDEM---TEKDLITWNTIIAGYEKSGSS-ECL 299
               +  + NS++ +Y +   L+ A   F+ M    ++D+++W+ ++A +  +G   + +
Sbjct: 92  EIEPDSVLYNSLISLYSKSGDLTKAKDVFETMGRFGKRDVVSWSAMMACFGNNGREFDAI 151

Query: 300 NMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG-LDGNLALANALIDM 358
            +F +       PN + +T++I AC+    +  G+ +   +++ G  + ++ +  +LIDM
Sbjct: 152 KLFVEFLEMGLVPNDYCYTAVIRACSNSDFVGVGRVILGFLMKTGHFESDVCVGCSLIDM 211

Query: 359 YAKCGN-ISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIV 417
           + K  N   ++ K+F +MS+ ++VTWT M+      G  +EAI  F +MV SG   D+  
Sbjct: 212 FVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFT 271

Query: 418 FMAVLTACSH 427
             +V +AC+ 
Sbjct: 272 LSSVFSACAE 281



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 74/122 (60%), Gaps = 3/122 (2%)

Query: 316 TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEM 375
           TF+S++ +C        G+ VHA ++   ++ +  L N+LI +Y+K G+++ ++ +F  M
Sbjct: 64  TFSSLLKSCIRARHFRLGKLVHARLIEFEIEPDSVLYNSLISLYSKSGDLTKAKDVFETM 123

Query: 376 ---SDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD 432
                RD+V+W++MM  +G +G   +AI+LF E ++ G+ P+   + AV+ ACS++  V 
Sbjct: 124 GRFGKRDVVSWSAMMACFGNNGREFDAIKLFVEFLEMGLVPNDYCYTAVIRACSNSDFVG 183

Query: 433 EG 434
            G
Sbjct: 184 VG 185



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 98/243 (40%), Gaps = 33/243 (13%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y   G I+ A  +F  M  R+V+SWT MI G+       +    F +M +  V PN
Sbjct: 515 LISMYSKCGSIDTASRVFSLMDNRNVISWTSMITGFAKHGFAERVLETFNQMTKEGVKPN 574

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLE--GSIYVENSL---MDVYATCCIS--- 163
             T  ++L AC            H   + EG     S+Y ++ +   M+ YA C +    
Sbjct: 575 EVTYVAILSACS-----------HVGLVSEGWRHFNSMYEDHKIKPKMEHYA-CMVDLLC 622

Query: 164 ----MDNARLVFNDMKWKNDV-SWTTLITG-YAHSGNGYGGLGVFKEMLLEGVEMNPYSF 217
               + +A    N M ++ DV  W T +     HS    G L   K  +LE     P ++
Sbjct: 623 RAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARK--ILEFDPNEPAAY 680

Query: 218 SIAVRACASTG-WVSFG----KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYF 272
                  AS G W        K+    ++K G  S + V + +   Y       +A+Q +
Sbjct: 681 IQLSNIYASAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKVHKFYVGDTSHPNAHQIY 740

Query: 273 DEM 275
           DE+
Sbjct: 741 DEL 743


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/596 (34%), Positives = 348/596 (58%), Gaps = 35/596 (5%)

Query: 45  PSILATNLIKSYFDE-GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           P++ + N I S + + G + E   LFD MP RD VSW  +I+GY       Q+   +  M
Sbjct: 73  PNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLM 132

Query: 104 VRNE--VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA--- 158
           ++N+   N N  T S++L        +     +HG  +K G    ++V + L+D+Y+   
Sbjct: 133 LKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMG 192

Query: 159 --TC-------------------------CISMDNARLVFNDMKWKNDVSWTTLITGYAH 191
             +C                         C  +++++ +F +M+ ++ +SWT++ITG+  
Sbjct: 193 MISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQ 252

Query: 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251
           +G     + +F+EM LE ++M+ Y+F   + AC     +  GK +HA +I+  +  N+ V
Sbjct: 253 NGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFV 312

Query: 252 MNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERF 310
            ++++DMYC+   +  A   F +MT K++++W  ++ GY ++G S E +  FS M+    
Sbjct: 313 ASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGI 372

Query: 311 SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQK 370
            P+ FT  S+I++CA LA+L  G Q HA  +  GL   + ++NAL+ +Y KCG+I DS +
Sbjct: 373 EPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHR 432

Query: 371 IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           +F+E+S +D VTWT+++ GY   G   E I LF+ M+  G++PD++ F+ VL+ACS AGL
Sbjct: 433 LFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGL 492

Query: 431 VDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           V++G + F+SM N++ + P ++ Y C++DL  RAGR++EA   I  MPF PD   W  LL
Sbjct: 493 VEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLL 552

Query: 490 GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKK 549
            +C+ +   ++GK AA  +++L P+   +Y++LS++YAA+GKWEE A+ RK MR  G +K
Sbjct: 553 SSCRFYGNMDIGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRK 612

Query: 550 EVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDL 605
           E G SWI+ +++V  F A+DK    +  +Y  LE L   M +  Y PD++ ++HD+
Sbjct: 613 EPGCSWIKYKNQVHVFSADDKSNPFSDQIYSELEKLNYKMIKEGYVPDMNSVLHDV 668



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 125/469 (26%), Positives = 235/469 (50%), Gaps = 44/469 (9%)

Query: 93  HN--QAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVE 150
           HN  +A  +   +++    P  F L++++ +   + S+  A  V      +    ++Y  
Sbjct: 23  HNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKV----FDQMPHPNLYSW 78

Query: 151 NSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE-- 208
           N+++  Y+     +     +F+ M  ++ VSW +LI+GYA  G  Y  +  +  ML    
Sbjct: 79  NTILSAYSKLG-RVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDG 137

Query: 209 GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDA 268
              +N  +FS  +   +  G V  G+ IH  V+K GF S + V + ++DMY +   +S A
Sbjct: 138 SFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCA 197

Query: 269 NQYFDEMTEKDLITWNTIIAGYEKSGSSE------------------------------- 297
            + FDE+ EK+++ +NT+I G  + G  E                               
Sbjct: 198 RKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDR 257

Query: 298 -CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALI 356
             +++F +MK E    + +TF S++ AC  + AL  G+QVHA I+R     N+ +A+AL+
Sbjct: 258 DAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALV 317

Query: 357 DMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI 416
           DMY KC NI  ++ +F +M+ +++V+WT+M++GYG +G+ +EA++ F +M K G+ PD  
Sbjct: 318 DMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDF 377

Query: 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
              +V+++C++   ++EG ++        +     +   +V L G+ G +++++ L   +
Sbjct: 378 TLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEI 437

Query: 477 PFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNMMGTYIILS 523
            FK DE  W  L+    +    N  +G   ++    LKP+ +    +LS
Sbjct: 438 SFK-DEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLS 485



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 142/324 (43%), Gaps = 65/324 (20%)

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           ++ C  T   +  K +H+ +IK        ++N+++  Y +   +  A + FD+M   +L
Sbjct: 16  LKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNL 75

Query: 281 ITWNTIIAGYEK--------------------------SGSSECLNMFSKMKSER----- 309
            +WNTI++ Y K                          SG + C  ++  +K+       
Sbjct: 76  YSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKN 135

Query: 310 ---FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK----- 361
              F+ N  TF++++   +    +  G+Q+H  +V+ G    + + + L+DMY+K     
Sbjct: 136 DGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMIS 195

Query: 362 --------------------------CGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
                                     CG + DS+++F EM +RD ++WTSM+ G+  +G 
Sbjct: 196 CARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGL 255

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455
            ++AI++F EM    ++ D+  F +VLTAC     + EG +    +   +   N  +   
Sbjct: 256 DRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASA 315

Query: 456 VVDLLGRAGRVKEAYELIKSMPFK 479
           +VD+  +   +K A  + K M  K
Sbjct: 316 LVDMYCKCKNIKSAEAVFKKMTCK 339


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/549 (38%), Positives = 318/549 (57%), Gaps = 4/549 (0%)

Query: 48   LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
            +  +LI +YF  G +E A  LFDE+ E DVVSW  MI G            +F++M+   
Sbjct: 507  VVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILG 566

Query: 108  VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
            V  +  TL SVL A   + +LS    +HG  +K      +   N+L+D+Y+ C  +++ A
Sbjct: 567  VEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCG-NLNGA 625

Query: 168  RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
              VF  M     VSWT+ I  Y   G     +G+F EM  +GV  + Y+ +  V ACA +
Sbjct: 626  TEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACS 685

Query: 228  GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
              +  G+ +H+ VIK+G GSNLPV N++++MY +   + +A   F ++  KD+++WNT+I
Sbjct: 686  SSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMI 745

Query: 288  AGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
             GY + S  +E L +F  M+ ++F P+  T   ++ ACA LAAL  G+++H  I+RRG  
Sbjct: 746  GGYSQNSLPNEALELFLDMQ-KQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYF 804

Query: 347  GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
             +L +A AL+DMYAKCG +  +Q +F  +  +DL++WT M+ GYG HG G EAI  F+EM
Sbjct: 805  SDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEM 864

Query: 407  VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGR 465
              +G+ PD   F  +L ACSH+GL++EG K+F SM N+  V P  E Y CVVDLL R G 
Sbjct: 865  RIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGN 924

Query: 466  VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
            + +AY+ I+SMP KPD ++WG LL  C+ H    L +  A  + +L+P+    Y++L+N+
Sbjct: 925  LSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANV 984

Query: 526  YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
            YA   KWEE  K RK M+  G K+  G SWIEV  K   F+A +      + +  +L  L
Sbjct: 985  YAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKRIDVLLRKL 1044

Query: 586  IRHMNETAY 594
               M    Y
Sbjct: 1045 TMQMQNEDY 1053



 Score =  225 bits (573), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 145/510 (28%), Positives = 264/510 (51%), Gaps = 10/510 (1%)

Query: 40  LIPKGPSI---LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQA 96
           +I  G SI   L   L+  Y + G + + R +FD++    V  W ++++ Y       ++
Sbjct: 395 IISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRES 454

Query: 97  WTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDV 156
            ++F +M +  V  N +T + VLK    +  +     VHG  +K G   +  V NSL+  
Sbjct: 455 VSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAA 514

Query: 157 YATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYS 216
           Y      +++A  +F+++   + VSW ++I G   +G    GL +F +ML+ GVE++  +
Sbjct: 515 YFKFG-GVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTT 573

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
               + A A+ G +S G+ +H   +K  F   +   N++LDMY +   L+ A + F +M 
Sbjct: 574 LVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMG 633

Query: 277 EKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ 335
           +  +++W + IA Y + G  S+ + +F +M+S+   P+ +T TSI+ ACA  ++L  G+ 
Sbjct: 634 DTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRD 693

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
           VH+ +++ G+  NL + NALI+MYAKCG++ +++ +FS++  +D+V+W +M+ GY  +  
Sbjct: 694 VHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSL 753

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455
             EA+ELF +M K   +PD I    VL AC+    +D+G +    +       +  +   
Sbjct: 754 PNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACA 812

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKP 513
           +VD+  + G +  A  L   +P K D   W  ++     H   N  +     +R+  ++P
Sbjct: 813 LVDMYAKCGLLVLAQLLFDMIP-KKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEP 871

Query: 514 NMMGTYIILSNIYAAEGKWEEFAKFRKIMR 543
           +     +IL N  +  G   E  KF   MR
Sbjct: 872 DESSFSVIL-NACSHSGLLNEGWKFFNSMR 900



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 134/458 (29%), Positives = 228/458 (49%), Gaps = 14/458 (3%)

Query: 117 SVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW 176
           SVL+ C   KSL +   VH + I  G+     +   L+ +Y  C   +   R +F+ +  
Sbjct: 374 SVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCG-DLVQGRKIFDKIMN 432

Query: 177 KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLI 236
                W  L++ YA  GN    + +FK+M   GV  N Y+F+  ++  A+ G V   K +
Sbjct: 433 DKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRV 492

Query: 237 HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-S 295
           H  V+K GFGSN  V+NS++  Y +F  +  A+  FDE++E D+++WN++I G   +G S
Sbjct: 493 HGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFS 552

Query: 296 SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
              L +F +M       +  T  S++ A A +  LS G+ +H   V+      +  +N L
Sbjct: 553 GNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTL 612

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           +DMY+KCGN++ + ++F +M D  +V+WTS +  Y   G   +AI LFDEM   GVRPD 
Sbjct: 613 LDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDI 672

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKS 475
               +++ AC+ +  +D+G      +    +  N  +   ++++  + G V+EA  +   
Sbjct: 673 YTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSK 732

Query: 476 MPFKPDESVWGPLLGACKEHRLPNLGKLAALRV-LDLKPNMMGTYIILSNIYAAEGKWEE 534
           +P K D   W  ++G   ++ LPN     AL + LD++       I ++ +  A      
Sbjct: 733 IPVK-DIVSWNTMIGGYSQNSLPN----EALELFLDMQKQFKPDDITMACVLPACAGLAA 787

Query: 535 FAKFRKI-----MRGMGSKKEVGMSWIEVRDKVCGFIA 567
             K R+I      RG  S   V  + +++  K CG + 
Sbjct: 788 LDKGREIHGHILRRGYFSDLHVACALVDMYAK-CGLLV 824



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/379 (28%), Positives = 196/379 (51%), Gaps = 7/379 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           + +  L+  Y   G +  A  +F +M +  +VSWT  IA Y     ++ A  +F EM   
Sbjct: 607 VFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSK 666

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V P+ +T++S++ AC    SL     VH   IK G+  ++ V N+L+++YA C  S++ 
Sbjct: 667 GVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCG-SVEE 725

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           ARLVF+ +  K+ VSW T+I GY+ +      L +F +M  +  + +  + +  + ACA 
Sbjct: 726 ARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQ-FKPDDITMACVLPACAG 784

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  G+ IH  +++ G+ S+L V  +++DMY +   L  A   FD + +KDLI+W  +
Sbjct: 785 LAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVM 844

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-G 344
           IAGY   G  +E ++ F++M+     P+  +F+ I+ AC+    L+ G +    +    G
Sbjct: 845 IAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECG 904

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHGHGKEAIELF 403
           ++  L     ++D+ A+ GN+S + K    M  + D   W  ++ G   H   K A ++ 
Sbjct: 905 VEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVA 964

Query: 404 DEMVKSGVRPDRIVFMAVL 422
           + + +  + PD   +  VL
Sbjct: 965 EHIFE--LEPDNTRYYVVL 981



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 137/271 (50%), Gaps = 9/271 (3%)

Query: 211 EMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQ 270
           E+   S+   ++ CA    +  GK +H+ +I +G   +  +   ++ MY     L    +
Sbjct: 366 ELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRK 425

Query: 271 YFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAA 329
            FD++    +  WN +++ Y K G+  E +++F KM+      NC+TFT ++   A L  
Sbjct: 426 IFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGK 485

Query: 330 LSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIG 389
           +   ++VH  +++ G   N A+ N+LI  Y K G +  +  +F E+S+ D+V+W SM+ G
Sbjct: 486 VKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMING 545

Query: 390 YGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP- 448
              +G     +E+F +M+  GV  D    ++VL A ++ G +  G    ++++ + V   
Sbjct: 546 CVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLG----RALHGFGVKAC 601

Query: 449 -NKEIY--GCVVDLLGRAGRVKEAYELIKSM 476
            ++E+     ++D+  + G +  A E+   M
Sbjct: 602 FSEEVVFSNTLLDMYSKCGNLNGATEVFVKM 632



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 3/194 (1%)

Query: 299 LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDM 358
           + + +K KS     N  ++ S++  CA   +L  G++VH+ I+  G+  + AL   L+ M
Sbjct: 356 IELLTKSKSYELGLN--SYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFM 413

Query: 359 YAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVF 418
           Y  CG++   +KIF ++ +  +  W  +M  Y   G+ +E++ LF +M K GV  +   F
Sbjct: 414 YVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTF 473

Query: 419 MAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPF 478
             VL   +  G V E  +    +       N  +   ++    + G V+ A+ L   +  
Sbjct: 474 TCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELS- 532

Query: 479 KPDESVWGPLLGAC 492
           +PD   W  ++  C
Sbjct: 533 EPDVVSWNSMINGC 546


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/562 (38%), Positives = 330/562 (58%), Gaps = 9/562 (1%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
           +LI  Y   G++ +AR +FD+M  RD V+W  MIAGY       + + +F +M    V P
Sbjct: 234 SLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKP 293

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
              T +SV+K+C  ++ L+   L+   A+K G      V  +LM V  + C  MD+A  +
Sbjct: 294 THMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALM-VALSKCKEMDDALSL 352

Query: 171 FNDMK-WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           F+ M+  KN VSWT +I+G   +G     + +F +M  EGV+ N +++S    A  +  +
Sbjct: 353 FSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYS----AILTVHY 408

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
             F   +HA VIK  +  +  V  ++LD Y +     DA + F+ +  KDL+ W+ ++AG
Sbjct: 409 PVFVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAG 468

Query: 290 YEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACAT-LAALSCGQQVHAGIVRRGLDG 347
           Y ++G +E    +F ++  E   PN FTF+S+I ACA+  AA   G+Q HA  ++  L+ 
Sbjct: 469 YAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNN 528

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
            L +++AL+ MYAK GNI  + ++F    +RDLV+W SM+ GY  HG  K+A+E+FDEM 
Sbjct: 529 ALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQ 588

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRV 466
           K  +  D + F+ V+TAC+HAGLV++G KYF SM ND+++NP  + Y C++DL  RAG +
Sbjct: 589 KRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGML 648

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
           ++A  +I  MPF P  +VW  LLGA + HR   LG+LAA +++ L+P     Y++LSN+Y
Sbjct: 649 EKAMGIINEMPFPPGATVWRTLLGAARVHRNVELGELAAEKLISLQPEDSAAYVLLSNMY 708

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           AA G W+E    RK+M     KKE G SWIEV++K   F+A D     +  +Y  L  L 
Sbjct: 709 AAAGNWQERTNVRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGDLTHPLSNQIYSKLSELS 768

Query: 587 RHMNETAYEPDIDCLIHDLEGE 608
             + +  Y+PD   + HD+E E
Sbjct: 769 IRLKDAGYQPDTKNVFHDIEDE 790



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 128/451 (28%), Positives = 242/451 (53%), Gaps = 9/451 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + T+L+  Y     + + R +FDEM ER+VVSWT ++AGY+    +   W +F +M    
Sbjct: 130 VGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEG 189

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V PN +T+S+V+ A      +     VH M +K G E +I V NSL+ +Y+   +  D A
Sbjct: 190 VLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRD-A 248

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R VF+ M+ ++ V+W ++I GY  +G       +F +M L GV+    +F+  +++CAS 
Sbjct: 249 RDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASL 308

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE-KDLITWNTI 286
             ++  KL+    +K GF ++  V+ +++    +   + DA   F  M E K++++W  +
Sbjct: 309 RELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAM 368

Query: 287 IAG-YEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+G  +  G+ + +N+FS+M+ E   PN FT+++I+     +       ++HA +++   
Sbjct: 369 ISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYPVFV----SEMHAEVIKTNY 424

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           + + ++  AL+D Y K GN  D+ K+F  +  +DL+ W++M+ GY   G  +EA +LF +
Sbjct: 425 ERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQ 484

Query: 406 MVKSGVRPDRIVFMAVLTAC-SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
           ++K G++P+   F +V+ AC S     ++G ++        +N    +   +V +  + G
Sbjct: 485 LIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAKRG 544

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            +  A+E+ K    + D   W  ++    +H
Sbjct: 545 NIDSAHEVFKRQK-ERDLVSWNSMISGYSQH 574



 Score =  208 bits (530), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 121/365 (33%), Positives = 198/365 (54%), Gaps = 9/365 (2%)

Query: 65  ARTLFDEMPERDVV--SWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKAC 122
           A  LFD++P R         ++  Y+      +A  +FV ++ + + P+  TLS V   C
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNIC 103

Query: 123 KGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSW 182
            G         VH   +K GL   + V  SL+D+Y     ++++ R VF++M  +N VSW
Sbjct: 104 AGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMK-TENVNDGRRVFDEMGERNVVSW 162

Query: 183 TTLITGYAHSGNGYGGL--GVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAV 240
           T+L+ GY  S NG  G    +F +M  EGV  N Y+ S  + A  + G V  G  +HA V
Sbjct: 163 TSLLAGY--SWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMV 220

Query: 241 IKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECL 299
           +KHGF   +PV NS++ +Y R   L DA   FD+M  +D +TWN++IAGY ++G   E  
Sbjct: 221 VKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVF 280

Query: 300 NMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMY 359
            +F+KM+     P   TF S+I +CA+L  L+  + +    ++ G   +  +  AL+   
Sbjct: 281 EIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVAL 340

Query: 360 AKCGNISDSQKIFSEMSD-RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVF 418
           +KC  + D+  +FS M + +++V+WT+M+ G   +G   +A+ LF +M + GV+P+   +
Sbjct: 341 SKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTY 400

Query: 419 MAVLT 423
            A+LT
Sbjct: 401 SAILT 405



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 136/243 (55%), Gaps = 1/243 (0%)

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG 244
           L+  Y+        L +F  +L   ++ +  + S     CA +     G+ +H   +K G
Sbjct: 64  LLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNICAGSLDGKLGRQVHCQCVKFG 123

Query: 245 FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFS 303
              ++ V  S++DMY + + ++D  + FDEM E+++++W +++AGY  +G       +F 
Sbjct: 124 LVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFC 183

Query: 304 KMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG 363
           +M+ E   PN +T +++IAA      +  G QVHA +V+ G +  + + N+LI +Y++ G
Sbjct: 184 QMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLG 243

Query: 364 NISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLT 423
            + D++ +F +M  RD VTW SM+ GY  +G   E  E+F++M  +GV+P  + F +V+ 
Sbjct: 244 MLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIK 303

Query: 424 ACS 426
           +C+
Sbjct: 304 SCA 306



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 121/247 (48%), Gaps = 4/247 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S + T L+ +Y   G   +A  +F+ +  +D+++W+ M+AGY       +A  +F ++++
Sbjct: 428 SSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIK 487

Query: 106 NEVNPNAFTLSSVLKACKG-MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
             + PN FT SSV+ AC     +       H  AIK  L  ++ V ++L+ +YA    ++
Sbjct: 488 EGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAKRG-NI 546

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           D+A  VF   K ++ VSW ++I+GY+  G     L VF EM    ++++  +F   + AC
Sbjct: 547 DSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITAC 606

Query: 225 ASTGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLIT 282
              G V  G K  ++ +  H     +   + ++D+Y R   L  A    +EM        
Sbjct: 607 THAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATV 666

Query: 283 WNTIIAG 289
           W T++  
Sbjct: 667 WRTLLGA 673



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 113/226 (50%), Gaps = 4/226 (1%)

Query: 268 ANQYFDEMTEK--DLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAAC 324
           A+  FD++  +   L   N ++  Y +   + E LN+F  +      P+  T + +   C
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNIC 103

Query: 325 ATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWT 384
           A       G+QVH   V+ GL  ++++  +L+DMY K  N++D +++F EM +R++V+WT
Sbjct: 104 AGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWT 163

Query: 385 SMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDY 444
           S++ GY  +G      ELF +M   GV P+R     V+ A  + G+V  GL+    +  +
Sbjct: 164 SLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKH 223

Query: 445 NVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490
                  ++  ++ L  R G +++A ++   M  + D   W  ++ 
Sbjct: 224 GFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIR-DWVTWNSMIA 268


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/565 (37%), Positives = 322/565 (56%), Gaps = 4/565 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++AT L+  Y   G  E+A+ LF  +  RD+V+W+ +IA         +A ++F EM   
Sbjct: 365 LVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQ 424

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           ++ PN  TL S+L AC  +  L     +H   +K  ++  +    +L+ +YA C      
Sbjct: 425 KMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGF-FTA 483

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A   FN M  ++ V+W +LI GYA  G+ Y  + +F ++ L  +  +  +    V ACA 
Sbjct: 484 ALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACAL 543

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLITWNT 285
              +  G  IH  ++K GF S+  V N+++DMY +   L  A   F++    KD +TWN 
Sbjct: 544 LNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNV 603

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           IIA Y ++G + E ++ F +M+ E F PN  TF S++ A A LAA   G   HA I++ G
Sbjct: 604 IIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMG 663

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
              N  + N+LIDMYAKCG +  S+K+F+EM  +D V+W +M+ GY  HGHG  AI LF 
Sbjct: 664 FLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFS 723

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRA 463
            M +S V+ D + F++VL+AC HAGLV+EG K F SM+D Y++ P+ E Y C+VDLLGRA
Sbjct: 724 LMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRA 783

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G   E    IK MP +PD  VWG LLG+C+ H    LG++A   ++ L+P     +++LS
Sbjct: 784 GLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLS 843

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           +IYA  G+W +  K R  M  +G KK  G SW+E+++KV  F   DK     + ++ +  
Sbjct: 844 SIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWN 903

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGE 608
            L+  M +  Y PD  C++ ++E E
Sbjct: 904 TLLEKMEKIGYVPDRSCVLQNVEEE 928



 Score =  239 bits (609), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 160/526 (30%), Positives = 259/526 (49%), Gaps = 16/526 (3%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            +   L+  Y   G ++ AR +FD+MP+RDVV+W  MIAG +      +A   F  M   
Sbjct: 165 FIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLV 224

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAAL---VHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
            V P++ +L   L    G+  LSN  L   +HG   +     +  V N L+D+Y+ C   
Sbjct: 225 GVEPSSVSL---LNLFPGICKLSNIELCRSIHGYVFRRDFSSA--VSNGLIDLYSKCG-D 278

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +D AR VF+ M  ++DVSW T++ GYAH+G     L +F +M L  V +N  S   A  A
Sbjct: 279 VDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLA 338

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
            A T  +  GK IH   ++    S++ V   ++ MY +      A Q F  +  +DL+ W
Sbjct: 339 AAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAW 398

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           + IIA   ++G   E L++F +M++++  PN  T  SI+ ACA L+ L  G+ +H   V+
Sbjct: 399 SAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVK 458

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
             +D +L+   AL+ MYAKCG  + +   F+ MS RD+VTW S++ GY   G    AI++
Sbjct: 459 ADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDM 518

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           F ++  S + PD    + V+ AC+    +D+G      +       +  +   ++D+  +
Sbjct: 519 FYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAK 578

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKE--HRLPNLGKLAALRVLDLKPNMMGTYI 520
            G +  A  L     F  DE  W  ++ A  +  H    +     +R+ +  PN + T++
Sbjct: 579 CGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSV-TFV 637

Query: 521 ILSNIYAAEGKWEEFAKFRKIMRGMG--SKKEVGMSWIEVRDKVCG 564
            +    A    + E   F   +  MG  S   VG S I++  K CG
Sbjct: 638 SVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAK-CG 682



 Score =  219 bits (558), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 127/452 (28%), Positives = 225/452 (49%), Gaps = 4/452 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S ++  LI  Y   G ++ AR +FD+M ++D VSW  M+AGY    C  +   +F +M  
Sbjct: 263 SAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKL 322

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             V  N  +  S   A      L     +HG A+++ ++  I V   LM +YA C    +
Sbjct: 323 GNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCG-ETE 381

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A+ +F  ++ ++ V+W+ +I     +G     L +F+EM  + ++ N  +    + ACA
Sbjct: 382 KAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACA 441

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               +  GK IH   +K    S+L    +++ MY +    + A   F+ M+ +D++TWN+
Sbjct: 442 DLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNS 501

Query: 286 IIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I GY + G     ++MF K++    +P+  T   ++ ACA L  L  G  +H  IV+ G
Sbjct: 502 LINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLG 561

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEAIELF 403
            + +  + NALIDMYAKCG++  ++ +F++    +D VTW  ++  Y  +GH KEAI  F
Sbjct: 562 FESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSF 621

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
            +M      P+ + F++VL A ++     EG+ +   +       N  +   ++D+  + 
Sbjct: 622 HQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKC 681

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           G++  + +L   M  K D   W  +L     H
Sbjct: 682 GQLDYSEKLFNEMDHK-DTVSWNAMLSGYAVH 712



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 119/403 (29%), Positives = 205/403 (50%), Gaps = 8/403 (1%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T+LI  Y      + AR++FD  P    + W  MI  YT    +N+A  ++  MV   + 
Sbjct: 67  THLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLE 126

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P+ +T + VLKAC G  +L      HG   + GLE  +++   L+D+Y+     +  AR 
Sbjct: 127 PDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMG-DLKRARE 185

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           VF+ M  ++ V+W  +I G + S +    +  F+ M L GVE +  S             
Sbjct: 186 VFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSN 245

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           +   + IH  V +  F S   V N ++D+Y +   +  A + FD+M ++D ++W T++AG
Sbjct: 246 IELCRSIHGYVFRRDFSS--AVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAG 303

Query: 290 YEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           Y  +G   E L +F KMK      N  +  S   A A    L  G+++H   +++ +D +
Sbjct: 304 YAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSD 363

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           + +A  L+ MYAKCG    ++++F  +  RDLV W++++      G+ +EA+ LF EM  
Sbjct: 364 ILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQN 423

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE 451
             ++P+R+  M++L AC+   L    LK  KS++ + V  + +
Sbjct: 424 QKMKPNRVTLMSILPACADLSL----LKLGKSIHCFTVKADMD 462



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 93/197 (47%), Gaps = 6/197 (3%)

Query: 302 FSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK 361
           F  + S  ++ N   +  ++++C  L  L    Q+HA I+  G   + ++ + LI++Y+ 
Sbjct: 21  FPSLSSSTYT-NYLHYPRLLSSCKHLNPL---LQIHAQIIVSGFKHHHSITH-LINLYSL 75

Query: 362 CGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAV 421
                 ++ +F    +   + W SM+  Y       EA+E++  MV+ G+ PD+  F  V
Sbjct: 76  FHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFV 135

Query: 422 LTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481
           L AC+ A  + EG+ +   ++   +  +  I   +VD+  + G +K A E+   MP K D
Sbjct: 136 LKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMP-KRD 194

Query: 482 ESVWGPLLGACKEHRLP 498
              W  ++    +   P
Sbjct: 195 VVAWNAMIAGLSQSEDP 211



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 44/78 (56%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           +++  +LI  Y   G ++ +  LF+EM  +D VSW  M++GY      ++A  +F  M  
Sbjct: 668 TLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQE 727

Query: 106 NEVNPNAFTLSSVLKACK 123
           ++V  ++ +  SVL AC+
Sbjct: 728 SQVQIDSVSFVSVLSACR 745


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/564 (36%), Positives = 334/564 (59%), Gaps = 5/564 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           +I+ T  +  Y     + +AR +F+  P     S   +I GY   +   +A  +F  + +
Sbjct: 306 NIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQK 365

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           + ++ +  +LS  L AC  +K       +HG+A+K GL+ +I V N+++D+YA C   M+
Sbjct: 366 SYLDFDEISLSGALTACSAIKGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCGALME 425

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A L+F+DM+ K+ VSW  +I  +  + +    L +F  ML   +E + Y+F   V+ACA
Sbjct: 426 -ACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACA 484

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               +++G  +H  VIK G G +  V ++I+DMYC+   L +A +  + + E+  ++WN+
Sbjct: 485 GKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNS 544

Query: 286 IIAGY--EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           II+G+  EK G +  L+ FS+M      P+ FT+ +++  CA LA +  G+Q+H  I++ 
Sbjct: 545 IISGFSSEKQGEN-ALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQIHGQILKL 603

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
            L  ++ +A+ ++DMY+KCGN+ DS+ +F +   RD VTW++M+  Y  HG G++AI+LF
Sbjct: 604 QLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAPKRDYVTWSAMICAYAYHGLGEDAIKLF 663

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGR 462
           +EM    V+P+  +F++VL AC+H G VD+GL YF+ M + Y ++P  E Y C+VDLLGR
Sbjct: 664 EEMQLQNVKPNHTIFISVLRACAHMGFVDKGLHYFREMRSHYGLDPQMEHYSCMVDLLGR 723

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           +G+V EA ELI+SMPF+ D+ +W  LLG C+      + + AA  +L L P     Y++L
Sbjct: 724 SGQVNEALELIESMPFEADDVIWRTLLGICRLQGNVEVAEKAANSLLQLDPQDSSAYVLL 783

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           SN+YA  G W E AK R  M+    KKE G SWI+VRD+V  F+  DK    ++ +Y   
Sbjct: 784 SNVYAIAGMWGEVAKIRSFMKNYKLKKEPGCSWIQVRDEVHAFLVGDKAHPRSEEIYQQT 843

Query: 583 EMLIRHMNETAYEPDIDCLIHDLE 606
            +L+  M    Y P+ID  + D E
Sbjct: 844 HLLVDEMKWDGYVPEIDGFLLDEE 867



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 128/430 (29%), Positives = 226/430 (52%), Gaps = 2/430 (0%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P+   I    +I  Y   G +E A+ LFD MPERDVVSW  M++ Y     H ++  +F
Sbjct: 99  MPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIF 158

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
            +M   E+  +  T + VLKAC G++       VH +AI+ G +  +    +L+D+Y+T 
Sbjct: 159 TKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYST- 217

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
           C  +D+A  +F +M  +N V W+ +I GY  +     GL ++K ML EG+ ++  +F+ A
Sbjct: 218 CKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASA 277

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
            R+CA       G  +HA  +K  FG +  V  + LDMY + D + DA + F+       
Sbjct: 278 FRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTR 337

Query: 281 ITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
            + N +I GY +     E L +F  ++      +  + +  + AC+ +     G Q+H  
Sbjct: 338 QSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGL 397

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
            V+ GLD N+ +AN ++DMYAKCG + ++  IF +M  +D V+W +++  +  + H +E 
Sbjct: 398 AVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEET 457

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL 459
           + LF  M++S + PD   F +V+ AC+    ++ G++    +    +  +  +   ++D+
Sbjct: 458 LALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDM 517

Query: 460 LGRAGRVKEA 469
             + G + EA
Sbjct: 518 YCKCGMLVEA 527



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 126/500 (25%), Positives = 225/500 (45%), Gaps = 45/500 (9%)

Query: 106 NEVNPNA-FTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
           N++NP    T S + + C  +K+++     H      G   +++V N L+  Y  C +++
Sbjct: 31  NQMNPTKKLTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKC-LNL 89

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSG-----------------------------NG 195
           + A  VF+ M  ++ +SW T+I GYA  G                             NG
Sbjct: 90  NYAFNVFDKMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNG 149

Query: 196 Y--GGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMN 253
           +    + +F +M L  ++ +  +F++ ++AC        G  +H   I+ GF S++    
Sbjct: 150 FHRKSIEIFTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGT 209

Query: 254 SILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSP 312
           +++DMY     L  A   F EM E++ + W+ +IAGY ++   +E L ++  M  E    
Sbjct: 210 ALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGV 269

Query: 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIF 372
           +  TF S   +CA L+A   G Q+HA  ++     +  +  A +DMYAKC  + D++K+F
Sbjct: 270 SQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVF 329

Query: 373 SEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD 432
           +   +    +  ++++GY       EA+E+F  + KS +  D I     LTACS      
Sbjct: 330 NTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYL 389

Query: 433 EGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGAC 492
           EG++         ++ N  +   ++D+  + G + EA  +   M  K D   W  ++ A 
Sbjct: 390 EGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIK-DAVSWNAIIAAH 448

Query: 493 K--EHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK----WEEFAKFRKIMRGMG 546
           +  EH    L    ++    ++P+    Y   S + A  GK    +      R I  GMG
Sbjct: 449 EQNEHVEETLALFVSMLRSTMEPD---DYTFGSVVKACAGKKALNYGMEVHGRVIKSGMG 505

Query: 547 SKKEVGMSWIEVRDKVCGFI 566
               VG + I++  K CG +
Sbjct: 506 LDWFVGSAIIDMYCK-CGML 524


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/554 (37%), Positives = 329/554 (59%), Gaps = 5/554 (0%)

Query: 60  GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119
           G +  A  +FD+MPER++V+WT+MI  +    C   A  +F++M  +   P+ FT SSVL
Sbjct: 197 GDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVL 256

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI--SMDNARLVFNDMKWK 177
            AC  +  L+    +H   I+ GL   + V  SL+D+YA C    S+D++R VF  M   
Sbjct: 257 SACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEH 316

Query: 178 NDVSWTTLITGYAHSGN-GYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLI 236
           N +SWT +IT Y  SG      + +F +M+   +  N +SFS  ++AC +      G+ +
Sbjct: 317 NVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQV 376

Query: 237 HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS-GS 295
           ++  +K G  S   V NS++ MY R   + DA + FD + EK+L+++N I+ GY K+  S
Sbjct: 377 YSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKS 436

Query: 296 SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
            E   +F+++       + FTF S+++  A++ A+  G+Q+H  +++ G   N  + NAL
Sbjct: 437 EEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNAL 496

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           I MY++CGNI  + ++F+EM DR++++WTSM+ G+  HG    A+E+F +M+++G +P+ 
Sbjct: 497 ISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNE 556

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
           I ++AVL+ACSH G++ EG K+F SM  ++ + P  E Y C+VDLLGR+G + EA E I 
Sbjct: 557 ITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFIN 616

Query: 475 SMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEE 534
           SMP   D  VW  LLGAC+ H    LG+ AA  +L+ +P+    YI+LSN++A+ G+W++
Sbjct: 617 SMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKD 676

Query: 535 FAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAY 594
             K RK M+     KE G SWIEV ++V  F   +        +Y  L+ L   + E  Y
Sbjct: 677 VVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGY 736

Query: 595 EPDIDCLIHDLEGE 608
            PD D ++HD+E E
Sbjct: 737 IPDTDFVLHDIEEE 750



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 133/482 (27%), Positives = 252/482 (52%), Gaps = 19/482 (3%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEM-PERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
           S++   LI  Y   G  E AR +F+ M  +RD+VSW+ M++ + + +   QA   F++M+
Sbjct: 79  SVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDML 138

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG-LEGSIYVENSLMDVYATCCIS 163
                PN +  ++V++AC          +++G  +K G LE  + V   L+D++      
Sbjct: 139 ELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGD 198

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           + +A  VF+ M  +N V+WT +IT +A  G     + +F +M L G   + +++S  + A
Sbjct: 199 LGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSA 258

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMY--CRFD-CLSDANQYFDEMTEKDL 280
           C   G ++ GK +H+ VI+ G   ++ V  S++DMY  C  D  + D+ + F++M E ++
Sbjct: 259 CTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNV 318

Query: 281 ITWNTIIAGYEKSGS--SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           ++W  II  Y +SG    E + +F KM S    PN F+F+S++ AC  L+    G+QV++
Sbjct: 319 MSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS 378

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
             V+ G+     + N+LI MYA+ G + D++K F  + +++LV++ +++ GY  +   +E
Sbjct: 379 YAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEE 438

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVD 458
           A  LF+E+  +G+      F ++L+  +  G + +G +    +       N+ I   ++ 
Sbjct: 439 AFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALIS 498

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESV--WGPLLGACKEHRLPNLGKLAALRVLDLKPNMM 516
           +  R G ++ A+++   M    D +V  W  ++    +H         A R L++   M+
Sbjct: 499 MYSRCGNIEAAFQVFNEM---EDRNVISWTSMITGFAKHGF-------ATRALEMFHKML 548

Query: 517 GT 518
            T
Sbjct: 549 ET 550



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 112/384 (29%), Positives = 218/384 (56%), Gaps = 9/384 (2%)

Query: 94  NQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSL 153
           + A++    M +    P+  T S +LK+C   ++     LVH   ++ GLE    V N+L
Sbjct: 26  HHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTL 85

Query: 154 MDVYATCCISMDNARLVFNDMKWKND-VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEM 212
           + +Y+ C    + ARL+F  M  K D VSW+ +++ +A++   +  +  F +ML  G   
Sbjct: 86  ISLYSKCG-DTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYP 144

Query: 213 NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGF-GSNLPVMNSILDMYCRFDC-LSDANQ 270
           N Y F+  +RAC++  +   G++I+  V+K G+  +++ V   ++DM+ +    L  A +
Sbjct: 145 NEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYK 204

Query: 271 YFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAA 329
            FD+M E++L+TW  +I  + + G + + +++F  M+   + P+ FT++S+++AC  L  
Sbjct: 205 VFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGL 264

Query: 330 LSCGQQVHAGIVRRGLDGNLALANALIDMYAKC---GNISDSQKIFSEMSDRDLVTWTSM 386
           L+ G+Q+H+ ++R GL  ++ +  +L+DMYAKC   G++ DS+K+F +M + ++++WT++
Sbjct: 265 LALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAI 324

Query: 387 MIGYGAHGH-GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYN 445
           +  Y   G   KEAIELF +M+   +RP+   F +VL AC +      G + +       
Sbjct: 325 ITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLG 384

Query: 446 VNPNKEIYGCVVDLLGRAGRVKEA 469
           +     +   ++ +  R+GR+++A
Sbjct: 385 IASVNCVGNSLISMYARSGRMEDA 408



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 107/244 (43%), Gaps = 37/244 (15%)

Query: 305 MKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGN 364
           M  +   P+  T++ ++ +C        G+ VH  +++ GL+ +  + N LI +Y+KCG+
Sbjct: 35  MTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGD 94

Query: 365 ISDSQKIFSEMSD-RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLT 423
              ++ IF  M + RDLV+W++M+  +  +    +AI  F +M++ G  P+   F AV+ 
Sbjct: 95  TETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIR 154

Query: 424 ACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC-VVDLLGR-AGRVKEAYELIKSMP---- 477
           ACS+A     G   +  +            GC ++D+  + +G +  AY++   MP    
Sbjct: 155 ACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNL 214

Query: 478 ------------------------------FKPDESVWGPLLGACKEHRLPNLGKLAALR 507
                                         + PD   +  +L AC E  L  LGK    R
Sbjct: 215 VTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSR 274

Query: 508 VLDL 511
           V+ L
Sbjct: 275 VIRL 278



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 85/198 (42%), Gaps = 24/198 (12%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           K    +   LI  Y   G IE A  +F+EM +R+V+SWT MI G+       +A  +F +
Sbjct: 487 KSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHK 546

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLE--GSIYVENSL---MDVY 157
           M+     PN  T  +VL AC            H   I EG +   S+Y E+ +   M+ Y
Sbjct: 547 MLETGTKPNEITYVAVLSACS-----------HVGMISEGQKHFNSMYKEHGIVPRMEHY 595

Query: 158 ATCCISMDNARLVFNDMKWKNDVS-------WTTLITGYAHSGNGYGGLGVFKEMLLEGV 210
           A     +  + L+   M++ N +        W TL+      GN   G     EM+LE  
Sbjct: 596 ACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHA-AEMILEQE 654

Query: 211 EMNPYSFSIAVRACASTG 228
             +P ++ +     AS G
Sbjct: 655 PDDPAAYILLSNLHASAG 672


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/552 (37%), Positives = 327/552 (59%), Gaps = 5/552 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +  +LI  YF    +  A+ LFDE+ +RDV+SW  MI+GY      ++   +F++M+   
Sbjct: 288 VVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFG 347

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG-LEGSIYVENSLMDVYATCCISMDN 166
           V+ +  T+ +V  AC  + +L    ++H  +IK   L+  +   N+L+D+Y+ C   +++
Sbjct: 348 VDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCG-DLNS 406

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  VF  M  K  VSWT++ITGY   G   G + +F EM   GV  + Y+ +  + ACA 
Sbjct: 407 AIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAI 466

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G +  GK++H  + ++   +N  V N++ DMY +   + DA+  F  M +KD+I+WNT+
Sbjct: 467 NGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTM 526

Query: 287 IAGYEK-SGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I GY K S  +E L +F++M+ E   P+  T   I+ ACA+LAAL  G+++H   +R G 
Sbjct: 527 IGGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACASLAALDKGREIHGYALRNGY 585

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             +  + NA++DMY KCG +  ++ +F  + ++DLV+WT M+ GYG HG+G EAI  F++
Sbjct: 586 SEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQ 645

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAG 464
           M  +G+ PD + F+++L ACSH+GL+DEG K F  M  +  + PN E Y C+VDLL R G
Sbjct: 646 MRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTG 705

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
            + +A++ IK+MP KPD ++WG LL  C+ H    L +  A R+ +L+P   G Y++L+N
Sbjct: 706 NLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLAN 765

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           IYA   KWEE  K RK +   G KK  G SWIE++ K+  F+A D      + +  +L+ 
Sbjct: 766 IYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKINIFVAGDCSKPQAKKIELLLKR 825

Query: 585 LIRHMNETAYEP 596
           L   M E  Y P
Sbjct: 826 LRSKMKEEGYSP 837



 Score =  228 bits (581), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 139/467 (29%), Positives = 244/467 (52%), Gaps = 8/467 (1%)

Query: 31  KSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSF 90
           +S I+S   +I     IL   L+  Y   G ++E R +FD++ E  +  W +MI+ Y+  
Sbjct: 173 RSIIESSGVMID---GILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGS 229

Query: 91  NCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVE 150
             + ++  +F +M+   + PN++T SS+LK    +  +     VHG+  K G      V 
Sbjct: 230 GNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVV 289

Query: 151 NSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGV 210
           NSL+  Y      +  A+ +F+++  ++ +SW ++I+GY  +G    G+ +F +ML+ GV
Sbjct: 290 NSLISFYFV-GRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGV 348

Query: 211 EMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG-FGSNLPVMNSILDMYCRFDCLSDAN 269
           +++  +      ACA+ G +  GK++H+  IK       +   N++LDMY +   L+ A 
Sbjct: 349 DIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAI 408

Query: 270 QYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLA 328
           + F+ M EK +++W ++I GY + G S+  + +F +MKS    P+ +  TSI+ ACA   
Sbjct: 409 RVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAING 468

Query: 329 ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMI 388
            L  G+ VH  I    L+ N  ++NAL DMYAKCG++ D+  +FS M  +D+++W +M+ 
Sbjct: 469 NLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIG 528

Query: 389 GYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP 448
           GY  +    EA+ LF EM +   +PD      +L AC+    +D+G +          + 
Sbjct: 529 GYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACASLAALDKGREIHGYALRNGYSE 587

Query: 449 NKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           +K +   VVD+  + G +  A  L   +P K D   W  ++     H
Sbjct: 588 DKYVTNAVVDMYVKCGLLVLARSLFDMIPNK-DLVSWTVMIAGYGMH 633



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 140/280 (50%), Gaps = 10/280 (3%)

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           ++ CA    +  G+ + + +   G   +  +   ++ MY +   L +    FD+++E  +
Sbjct: 157 LQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSESKI 216

Query: 281 ITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
             WN +I+ Y  SG+  E +N+F +M      PN +TF+SI+   A +A +  G+QVH  
Sbjct: 217 FLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGL 276

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
           I + G +    + N+LI  Y     +  +QK+F E++DRD+++W SM+ GY  +G     
Sbjct: 277 ICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRG 336

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP---NKEIY--G 454
           IE+F +M+  GV  D    + V  AC++ G +  G    K ++ Y++     ++E+    
Sbjct: 337 IEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLG----KVLHSYSIKAATLDREVRFNN 392

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKE 494
            ++D+  + G +  A  + + M  K   S    + G  +E
Sbjct: 393 TLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVRE 432



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 65/119 (54%)

Query: 316 TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEM 375
            + SI+  CA   ++  G++V + I   G+  +  L   L+ MY KCG++ + + +F ++
Sbjct: 152 AYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKL 211

Query: 376 SDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434
           S+  +  W  M+  Y   G+  E+I LF +M++ G++P+   F ++L   +    V+EG
Sbjct: 212 SESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEG 270


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/554 (37%), Positives = 329/554 (59%), Gaps = 5/554 (0%)

Query: 60  GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119
           G +  A  +FD+MPER++V+WT+MI  +    C   A  +F++M  +   P+ FT SSVL
Sbjct: 179 GDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVL 238

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI--SMDNARLVFNDMKWK 177
            AC  +  L+    +H   I+ GL   + V  SL+D+YA C    S+D++R VF  M   
Sbjct: 239 SACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEH 298

Query: 178 NDVSWTTLITGYAHSGN-GYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLI 236
           N +SWT +IT Y  SG      + +F +M+   +  N +SFS  ++AC +      G+ +
Sbjct: 299 NVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQV 358

Query: 237 HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS-GS 295
           ++  +K G  S   V NS++ MY R   + DA + FD + EK+L+++N I+ GY K+  S
Sbjct: 359 YSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKS 418

Query: 296 SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
            E   +F+++       + FTF S+++  A++ A+  G+Q+H  +++ G   N  + NAL
Sbjct: 419 EEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNAL 478

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           I MY++CGNI  + ++F+EM DR++++WTSM+ G+  HG    A+E+F +M+++G +P+ 
Sbjct: 479 ISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNE 538

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
           I ++AVL+ACSH G++ EG K+F SM  ++ + P  E Y C+VDLLGR+G + EA E I 
Sbjct: 539 ITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFIN 598

Query: 475 SMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEE 534
           SMP   D  VW  LLGAC+ H    LG+ AA  +L+ +P+    YI+LSN++A+ G+W++
Sbjct: 599 SMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKD 658

Query: 535 FAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAY 594
             K RK M+     KE G SWIEV ++V  F   +        +Y  L+ L   + E  Y
Sbjct: 659 VVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGY 718

Query: 595 EPDIDCLIHDLEGE 608
            PD D ++HD+E E
Sbjct: 719 IPDTDFVLHDIEEE 732



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 133/482 (27%), Positives = 252/482 (52%), Gaps = 19/482 (3%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEM-PERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
           S++   LI  Y   G  E AR +F+ M  +RD+VSW+ M++ + + +   QA   F++M+
Sbjct: 61  SVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDML 120

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG-LEGSIYVENSLMDVYATCCIS 163
                PN +  ++V++AC          +++G  +K G LE  + V   L+D++      
Sbjct: 121 ELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGD 180

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           + +A  VF+ M  +N V+WT +IT +A  G     + +F +M L G   + +++S  + A
Sbjct: 181 LGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSA 240

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMY--CRFD-CLSDANQYFDEMTEKDL 280
           C   G ++ GK +H+ VI+ G   ++ V  S++DMY  C  D  + D+ + F++M E ++
Sbjct: 241 CTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNV 300

Query: 281 ITWNTIIAGYEKSGS--SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           ++W  II  Y +SG    E + +F KM S    PN F+F+S++ AC  L+    G+QV++
Sbjct: 301 MSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS 360

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
             V+ G+     + N+LI MYA+ G + D++K F  + +++LV++ +++ GY  +   +E
Sbjct: 361 YAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEE 420

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVD 458
           A  LF+E+  +G+      F ++L+  +  G + +G +    +       N+ I   ++ 
Sbjct: 421 AFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALIS 480

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESV--WGPLLGACKEHRLPNLGKLAALRVLDLKPNMM 516
           +  R G ++ A+++   M    D +V  W  ++    +H         A R L++   M+
Sbjct: 481 MYSRCGNIEAAFQVFNEM---EDRNVISWTSMITGFAKHGF-------ATRALEMFHKML 530

Query: 517 GT 518
            T
Sbjct: 531 ET 532



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 112/384 (29%), Positives = 218/384 (56%), Gaps = 9/384 (2%)

Query: 94  NQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSL 153
           + A++    M +    P+  T S +LK+C   ++     LVH   ++ GLE    V N+L
Sbjct: 8   HHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTL 67

Query: 154 MDVYATCCISMDNARLVFNDMKWKND-VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEM 212
           + +Y+ C    + ARL+F  M  K D VSW+ +++ +A++   +  +  F +ML  G   
Sbjct: 68  ISLYSKCG-DTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYP 126

Query: 213 NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGF-GSNLPVMNSILDMYCRFDC-LSDANQ 270
           N Y F+  +RAC++  +   G++I+  V+K G+  +++ V   ++DM+ +    L  A +
Sbjct: 127 NEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYK 186

Query: 271 YFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAA 329
            FD+M E++L+TW  +I  + + G + + +++F  M+   + P+ FT++S+++AC  L  
Sbjct: 187 VFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGL 246

Query: 330 LSCGQQVHAGIVRRGLDGNLALANALIDMYAKC---GNISDSQKIFSEMSDRDLVTWTSM 386
           L+ G+Q+H+ ++R GL  ++ +  +L+DMYAKC   G++ DS+K+F +M + ++++WT++
Sbjct: 247 LALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAI 306

Query: 387 MIGYGAHGH-GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYN 445
           +  Y   G   KEAIELF +M+   +RP+   F +VL AC +      G + +       
Sbjct: 307 ITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLG 366

Query: 446 VNPNKEIYGCVVDLLGRAGRVKEA 469
           +     +   ++ +  R+GR+++A
Sbjct: 367 IASVNCVGNSLISMYARSGRMEDA 390



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 107/244 (43%), Gaps = 37/244 (15%)

Query: 305 MKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGN 364
           M  +   P+  T++ ++ +C        G+ VH  +++ GL+ +  + N LI +Y+KCG+
Sbjct: 17  MTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGD 76

Query: 365 ISDSQKIFSEMSD-RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLT 423
              ++ IF  M + RDLV+W++M+  +  +    +AI  F +M++ G  P+   F AV+ 
Sbjct: 77  TETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIR 136

Query: 424 ACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC-VVDLLGR-AGRVKEAYELIKSMP---- 477
           ACS+A     G   +  +            GC ++D+  + +G +  AY++   MP    
Sbjct: 137 ACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNL 196

Query: 478 ------------------------------FKPDESVWGPLLGACKEHRLPNLGKLAALR 507
                                         + PD   +  +L AC E  L  LGK    R
Sbjct: 197 VTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSR 256

Query: 508 VLDL 511
           V+ L
Sbjct: 257 VIRL 260



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 85/198 (42%), Gaps = 24/198 (12%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           K    +   LI  Y   G IE A  +F+EM +R+V+SWT MI G+       +A  +F +
Sbjct: 469 KSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHK 528

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLE--GSIYVENSL---MDVY 157
           M+     PN  T  +VL AC            H   I EG +   S+Y E+ +   M+ Y
Sbjct: 529 MLETGTKPNEITYVAVLSACS-----------HVGMISEGQKHFNSMYKEHGIVPRMEHY 577

Query: 158 ATCCISMDNARLVFNDMKWKNDVS-------WTTLITGYAHSGNGYGGLGVFKEMLLEGV 210
           A     +  + L+   M++ N +        W TL+      GN   G     EM+LE  
Sbjct: 578 ACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHA-AEMILEQE 636

Query: 211 EMNPYSFSIAVRACASTG 228
             +P ++ +     AS G
Sbjct: 637 PDDPAAYILLSNLHASAG 654


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/572 (37%), Positives = 332/572 (58%), Gaps = 4/572 (0%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           I +  + L T L   Y   GL+ +A  +FD +  ++   W  MI GY S     ++  ++
Sbjct: 90  ILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLY 149

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
            EM+      + FT   VLKAC  +  +     VH   +  GLE  IYV NSL+ +YA  
Sbjct: 150 REMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKF 209

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
              M  AR+VF+ M  ++  SW T+I+GYA + +      VF  M   G+  +  +    
Sbjct: 210 G-DMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGL 268

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGS-NLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
           + ACA    V  GK+IH   +++  G+ N    NS+++MYC  +C+ DA + F+ +  KD
Sbjct: 269 LSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKD 328

Query: 280 LITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
            ++WN++I GY ++G + E L +F +M  +   P+  TF +++ AC  +AAL  G  +H+
Sbjct: 329 TVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHS 388

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
            +V++G D N  +  AL+DMY+KCG+++ S+++F EM D+ LV+W++M+ GYG HG G+E
Sbjct: 389 YLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGRE 448

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVV 457
           AI + D M  + V PD  VF ++L+ACSHAGLV EG + F  M  +YNV P    Y C+V
Sbjct: 449 AISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMV 508

Query: 458 DLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG 517
           DLLGRAG + EAY +I++M  KP   +W  LL A + H+   L +++A +V D+ P ++ 
Sbjct: 509 DLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLHKNIKLAEISAQKVFDMNPKVVS 568

Query: 518 TYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQY 577
           +YI LSNIYAAE +W++  + R ++R  G KK  G S+IE+ + V  F+  DK    T+ 
Sbjct: 569 SYICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELDNMVHRFLVGDKSHQQTED 628

Query: 578 VYGVLEMLIRHMNETAYEPDIDCLIHDLEGET 609
           +Y  L  L + + E  Y+PD   + +D+E E 
Sbjct: 629 IYAKLNELKQQLKEAGYKPDTSLVFYDVEEEV 660



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/443 (27%), Positives = 211/443 (47%), Gaps = 22/443 (4%)

Query: 72  MPERDVVSWT--VMIAG----YTSFNCHNQAWTVFVEMVRNEVNPNAFTLS--------- 116
           +  R +++WT   ++ G    Y SF  H     V  +MV   ++     L          
Sbjct: 4   VSNRCLIAWTPHAILGGRDREYNSFTSHFSQGDV-AQMVERSLSMREHPLQQYPLTSLQC 62

Query: 117 -SVLKACKGMKSLSNAALVHGMAIKEG-LEGSIYVENSLMDVYATCCISMDNARLVFNDM 174
            ++L++    KS      +H   I    LE + Y+   L   YA C + M  A ++F+ +
Sbjct: 63  GALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGL-MSQAEVIFDGI 121

Query: 175 KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGK 234
             KN   W  +I GYA +G     L +++EML  G   + +++   ++AC     V  G+
Sbjct: 122 VLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGR 181

Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG 294
            +H+ V+  G  S++ V NS+L MY +F  +  A   FD M E+DL +WNT+I+GY K+ 
Sbjct: 182 RVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNA 241

Query: 295 SS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL-DGNLALA 352
            S     +F  M       +C T   +++ACA L A+  G+ +H   VR  + + N    
Sbjct: 242 DSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFT 301

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
           N+LI+MY  C  + D++++F  +  +D V+W SM++GY  +G   E++ LF  M   G  
Sbjct: 302 NSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSG 361

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
           PD++ F+AVL AC     +  G+     +     + N  +   +VD+  + G +  +  +
Sbjct: 362 PDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRV 421

Query: 473 IKSMPFKPDESVWGPLLGACKEH 495
              MP K   S W  ++     H
Sbjct: 422 FDEMPDKSLVS-WSAMVAGYGLH 443



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 22/162 (13%)

Query: 40  LIPKG---PSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQA 96
           L+ KG    +I+ T L+  Y   G +  +R +FDEMP++ +VSW+ M+AGY       +A
Sbjct: 390 LVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREA 449

Query: 97  WTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAAL-VHGMAIKEGLEGSIYVENSLMD 155
            ++   M  N V P+    +S+L AC      S+A L V G  I   +E    V+ +L  
Sbjct: 450 ISILDGMKANSVIPDNGVFTSILSAC------SHAGLVVEGKEIFYKMEKEYNVKPAL-- 501

Query: 156 VYATCCIS-------MDNARLVFNDMKWK--NDVSWTTLITG 188
            + +C +        +D A ++   M+ K  +D+ W  L+T 
Sbjct: 502 SHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDI-WAALLTA 542


>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
          Length = 846

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/544 (37%), Positives = 326/544 (59%), Gaps = 8/544 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           ++T+L+  Y   G IE++  +F+ M E + VSW  MI+G TS   H +A+ +FV M    
Sbjct: 204 VSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGA 263

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
             PN +TL SV KA   +  ++    V   A + G+EG++ V  +L+D+Y+ C  S+ +A
Sbjct: 264 CTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCG-SLHDA 322

Query: 168 RLVFNDMKWKN---DVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           R VF D  + N   +  W  +I+GY+ SG     L ++ +M   G+  + Y++     A 
Sbjct: 323 RSVF-DTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAI 381

Query: 225 ASTGWVSFGKLIHAAVIKHGFG-SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           A++  + FG+++H  V+K G     + V N+I D Y +   L D  + FD M E+D+++W
Sbjct: 382 AASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSW 441

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
            T++  Y +S    E L  F  M+ E F+PN FTF+S++ +CA+L  L  G+QVH  + +
Sbjct: 442 TTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCK 501

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            GLD    + +ALIDMYAKCG+I+++ K+F ++S+ D+V+WT+++ GY  HG  ++A++L
Sbjct: 502 AGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQL 561

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLG 461
           F  M  SG++ + +  + VL ACSH G+V+EGL YF+ M D Y V P  E Y C++DLLG
Sbjct: 562 FRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLG 621

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           R GR+ +A E I+ MP +P+E VW  LLG C+ H    LG++AA ++L ++P    TY++
Sbjct: 622 RVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAARKILSIRPEYSATYVL 681

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGV 581
           LSN Y   G +E+    R +M+  G KKE G SWI V+ +V  F + D+     + +Y  
Sbjct: 682 LSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVKGRVHKFYSGDQQHPQKKEIYVK 741

Query: 582 LEML 585
           LE L
Sbjct: 742 LEEL 745



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 128/438 (29%), Positives = 222/438 (50%), Gaps = 14/438 (3%)

Query: 68  LFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKS 127
           +FDEMP+R+V SWTVMI G T        +  F EM+ + + P+ F  S+++++C G+ S
Sbjct: 123 VFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDS 182

Query: 128 LSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLIT 187
           L    +VH   +  G    I+V  SL+++YA    S++++  VFN M   N VSW  +I+
Sbjct: 183 LELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLG-SIEDSYWVFNMMTEHNQVSWNAMIS 241

Query: 188 GYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGS 247
           G   +G       +F  M       N Y+     +A      V+ GK +     + G   
Sbjct: 242 GCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEG 301

Query: 248 NLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT------WNTIIAGYEKSG-SSECLN 300
           N+ V  +++DMY +   L DA   FD     + I       WN +I+GY +SG S E L 
Sbjct: 302 NVLVGTALIDMYSKCGSLHDARSVFD----TNFINCGVNTPWNAMISGYSQSGCSQEALE 357

Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD-GNLALANALIDMY 359
           ++ +M     + + +T+ S+  A A   +L  G+ VH  +++ GLD   +++ NA+ D Y
Sbjct: 358 LYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAY 417

Query: 360 AKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFM 419
           +KCG + D +K+F  M +RD+V+WT+++  Y     G+EA+  F  M + G  P++  F 
Sbjct: 418 SKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFS 477

Query: 420 AVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
           +VL +C+    ++ G +    +    ++  K I   ++D+  + G + EA ++   +   
Sbjct: 478 SVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKIS-N 536

Query: 480 PDESVWGPLLGACKEHRL 497
           PD   W  ++    +H L
Sbjct: 537 PDIVSWTAIISGYAQHGL 554



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 117/424 (27%), Positives = 211/424 (49%), Gaps = 36/424 (8%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVS--WTVMIAGYTSFNCHNQAWTVF 100
           +G  ++ T LI  Y   G + +AR++FD       V+  W  MI+GY+   C  +A  ++
Sbjct: 300 EGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELY 359

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLE-GSIYVENSLMDVYAT 159
           V+M +N +  + +T  SV  A    KSL    +VHGM +K GL+   + V N++ D Y+ 
Sbjct: 360 VQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSK 419

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
           C   +++ R VF+ M+ ++ VSWTTL+T Y+ S  G   L  F  M  EG   N ++FS 
Sbjct: 420 CGF-LEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSS 478

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
            + +CAS  ++ +G+ +H  + K G  +   + ++++DMY +   +++A + FD+++  D
Sbjct: 479 VLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPD 538

Query: 280 LITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           +++W  II+GY + G  E  L +F +M+      N  T   ++ AC+           H 
Sbjct: 539 IVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACS-----------HG 587

Query: 339 GIVRRGL-------DG-----NLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTS 385
           G+V  GL       DG      +     +ID+  + G + D+ +   +M  + + + W +
Sbjct: 588 GMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQT 647

Query: 386 MMIGYGAHGHGKEAIELFDEMVKS--GVRPDRIVFMAVLTACS-HAGLVDEGLKYFKSMN 442
           ++ G   HG+    +EL +   +    +RP+      +L+      G  ++GL     M 
Sbjct: 648 LLGGCRVHGN----VELGEIAARKILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMK 703

Query: 443 DYNV 446
           D  V
Sbjct: 704 DQGV 707



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 96/319 (30%), Positives = 170/319 (53%), Gaps = 14/319 (4%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGS--IYVENSLMDVYATCCISMDNARLVFN 172
           L  VL+ C    S+  A  VHG+ +K   E    + + N    VY+ C      A  VF+
Sbjct: 67  LIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCS-EFRAACGVFD 125

Query: 173 DMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSF 232
           +M  +N  SWT +I G    G  + G   F EML  G+  + +++S  +++C     +  
Sbjct: 126 EMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLEL 185

Query: 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEK 292
           GK++HA ++  GF +++ V  S+L+MY +   + D+   F+ MTE + ++WN +I+G   
Sbjct: 186 GKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTS 245

Query: 293 SG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLAL 351
           +G   E  ++F +MK+   +PN +T  S+  A   L  ++ G++V       G++GN+ +
Sbjct: 246 NGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLV 305

Query: 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVT------WTSMMIGYGAHGHGKEAIELFDE 405
             ALIDMY+KCG++ D++ +F    D + +       W +M+ GY   G  +EA+EL+ +
Sbjct: 306 GTALIDMYSKCGSLHDARSVF----DTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQ 361

Query: 406 MVKSGVRPDRIVFMAVLTA 424
           M ++G+  D   + +V  A
Sbjct: 362 MCQNGITSDLYTYCSVFNA 380



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 126/252 (50%), Gaps = 3/252 (1%)

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSN--LPVMNSILDMYCRFDCLSDANQYFDEMTEK 278
           +R CA  G +   K +H  V+K  F     + + N    +Y +      A   FDEM ++
Sbjct: 71  LRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQR 130

Query: 279 DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
           ++ +W  +I G  + G   +    F +M +    P+ F +++II +C  L +L  G+ VH
Sbjct: 131 NVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELGKMVH 190

Query: 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
           A IV RG   ++ ++ +L++MYAK G+I DS  +F+ M++ + V+W +M+ G  ++G   
Sbjct: 191 AQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHL 250

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVV 457
           EA +LF  M      P+    ++V  A      V+ G +     ++  +  N  +   ++
Sbjct: 251 EAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALI 310

Query: 458 DLLGRAGRVKEA 469
           D+  + G + +A
Sbjct: 311 DMYSKCGSLHDA 322


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/539 (38%), Positives = 318/539 (58%), Gaps = 4/539 (0%)

Query: 62  IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121
           +E AR LFDE+ +RDV+SW  MI+GY S     +   +F +M+   +N +  T+ SV+  
Sbjct: 201 VESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAG 260

Query: 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS 181
           C     L     +HG AIK      + + N L+D+Y+    ++++A  VF  M  ++ VS
Sbjct: 261 CSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSG-NLNSAIQVFETMGERSVVS 319

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           WT++I GYA  G     + +F EM  EG+  + ++ +  + ACA TG +  GK +H  + 
Sbjct: 320 WTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIK 379

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEK-SGSSECLN 300
           ++   S+L V N+++DMY +   + DA+  F EM  KD+++WNT+I GY K S  +E LN
Sbjct: 380 ENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALN 439

Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360
           +F +M+     PN  T   I+ ACA+LAAL  GQ++H  I+R G   +  +ANAL+DMY 
Sbjct: 440 LFVEMQYNS-KPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYL 498

Query: 361 KCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420
           KCG +  ++ +F  + ++DLV+WT M+ GYG HG+G EAI  F+EM  SG+ PD + F++
Sbjct: 499 KCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFIS 558

Query: 421 VLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
           +L ACSH+GL+DEG  +F  M N+  + P  E Y C+VDLL RAG + +AY+ IK MP +
Sbjct: 559 ILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIE 618

Query: 480 PDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFR 539
           PD ++WG LL  C+ +    L +  A  V +L+P   G Y++L+NIYA   KWEE  K R
Sbjct: 619 PDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLR 678

Query: 540 KIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDI 598
           + +   G +K  G SWIE++ KV  F+  D        +  +L+     M E  + P +
Sbjct: 679 ERIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKM 737



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 120/431 (27%), Positives = 207/431 (48%), Gaps = 54/431 (12%)

Query: 101 VEMVRNEVNPNA--FTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA 158
           +E++     P+    T  SVL+ C  +KS+ +   +H +     +E    + + L+ +Y 
Sbjct: 88  MELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYV 147

Query: 159 TCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGN------------------------ 194
           TC   +   R +F+ +  +    W  L+ GYA  GN                        
Sbjct: 148 TCG-DLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARK 206

Query: 195 ------------------GY-------GGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
                             GY        GL +F++MLL G+  +  +    V  C++TG 
Sbjct: 207 LFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGM 266

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           +  G+ +H   IK  FG  L + N +LDMY +   L+ A Q F+ M E+ +++W ++IAG
Sbjct: 267 LLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAG 326

Query: 290 YEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           Y + G S+  + +F +M+ E  SP+ FT T+I+ ACA    L  G+ VH  I    +  +
Sbjct: 327 YAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSD 386

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           L ++NAL+DMYAKCG++ D+  +FSEM  +D+V+W +M+ GY  +    EA+ LF EM +
Sbjct: 387 LFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEM-Q 445

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKE 468
              +P+ I    +L AC+    ++ G +    +     + ++ +   +VD+  + G +  
Sbjct: 446 YNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGL 505

Query: 469 AYELIKSMPFK 479
           A  L   +P K
Sbjct: 506 ARLLFDMIPEK 516



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/352 (31%), Positives = 184/352 (52%), Gaps = 27/352 (7%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+  Y   G +  A  +F+ M ER VVSWT MIAGY      + +  +F EM +  ++P+
Sbjct: 292 LLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPD 351

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
            FT++++L AC     L N   VH    +  ++  ++V N+LMD+YA C  SM +A  VF
Sbjct: 352 IFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCG-SMGDAHSVF 410

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           ++M+ K+ VSW T+I GY+ +      L +F EM     + N  + +  + ACAS   + 
Sbjct: 411 SEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNS-KPNSITMACILPACASLAALE 469

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            G+ IH  ++++GF  +  V N+++DMY +   L  A   FD + EKDL++W  +IAGY 
Sbjct: 470 RGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYG 529

Query: 292 KSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG------ 344
             G  SE +  F++M++    P+  +F SI+ AC+           H+G++  G      
Sbjct: 530 MHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACS-----------HSGLLDEGWGFFNM 578

Query: 345 LDGNLALA------NALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIG 389
           +  N  +         ++D+ A+ GN+S + K    M  + D   W +++ G
Sbjct: 579 MRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCG 630



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 44/75 (58%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A  L+  Y   G +  AR LFD +PE+D+VSWTVMIAGY      ++A   F EM  + 
Sbjct: 489 VANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSG 548

Query: 108 VNPNAFTLSSVLKAC 122
           + P+  +  S+L AC
Sbjct: 549 IEPDEVSFISILYAC 563


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/565 (37%), Positives = 321/565 (56%), Gaps = 4/565 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++AT L+  Y   G  E+A+ LF  +  RD+V+W+ +IA         +A ++F EM   
Sbjct: 365 LVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQ 424

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           ++ PN  TL S+L AC  +  L     +H   +K  ++  +    +L+ +YA C      
Sbjct: 425 KMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGF-FTA 483

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A   FN M  ++ V+W +LI GYA  G+ Y  + +F ++ L  +  +  +    V ACA 
Sbjct: 484 ALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACAL 543

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLITWNT 285
              +  G  IH  ++K GF S+  V N+++DMY +   L  A   F++    KD +TWN 
Sbjct: 544 LNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNV 603

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           IIA Y ++G + E ++ F +M+ E F PN  TF S++ A A LAA   G   HA I++ G
Sbjct: 604 IIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMG 663

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
              N  + N+LIDMYAKCG +  S+K+F+EM  +D V+W +M+ GY  HGHG  AI LF 
Sbjct: 664 FLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFS 723

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRA 463
            M +S V+ D + F++VL+AC H GLV+EG K F SM+D Y++ P+ E Y C+VDLLGRA
Sbjct: 724 LMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRA 783

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G   E    IK MP +PD  VWG LLG+C+ H    LG++A   ++ L+P     +++LS
Sbjct: 784 GLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLS 843

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           +IYA  G+W +  K R  M  +G KK  G SW+E+++KV  F   DK     + ++ +  
Sbjct: 844 SIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWN 903

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGE 608
            L+  M +  Y PD  C++ ++E E
Sbjct: 904 TLLEKMEKIGYVPDRSCVLQNVEEE 928



 Score =  239 bits (609), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 160/526 (30%), Positives = 259/526 (49%), Gaps = 16/526 (3%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            +   L+  Y   G ++ AR +FD+MP+RDVV+W  MIAG +      +A   F  M   
Sbjct: 165 FIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLV 224

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAAL---VHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
            V P++ +L   L    G+  LSN  L   +HG   +     +  V N L+D+Y+ C   
Sbjct: 225 GVEPSSVSL---LNLFPGICKLSNIELCRSIHGYVFRRDFSSA--VSNGLIDLYSKCG-D 278

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +D AR VF+ M  ++DVSW T++ GYAH+G     L +F +M L  V +N  S   A  A
Sbjct: 279 VDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLA 338

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
            A T  +  GK IH   ++    S++ V   ++ MY +      A Q F  +  +DL+ W
Sbjct: 339 AAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAW 398

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           + IIA   ++G   E L++F +M++++  PN  T  SI+ ACA L+ L  G+ +H   V+
Sbjct: 399 SAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVK 458

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
             +D +L+   AL+ MYAKCG  + +   F+ MS RD+VTW S++ GY   G    AI++
Sbjct: 459 ADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDM 518

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           F ++  S + PD    + V+ AC+    +D+G      +       +  +   ++D+  +
Sbjct: 519 FYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAK 578

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKE--HRLPNLGKLAALRVLDLKPNMMGTYI 520
            G +  A  L     F  DE  W  ++ A  +  H    +     +R+ +  PN + T++
Sbjct: 579 CGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSV-TFV 637

Query: 521 ILSNIYAAEGKWEEFAKFRKIMRGMG--SKKEVGMSWIEVRDKVCG 564
            +    A    + E   F   +  MG  S   VG S I++  K CG
Sbjct: 638 SVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAK-CG 682



 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 127/452 (28%), Positives = 225/452 (49%), Gaps = 4/452 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S ++  LI  Y   G ++ AR +FD+M ++D VSW  M+AGY    C  +   +F +M  
Sbjct: 263 SAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKL 322

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             V  N  +  S   A      L     +HG A+++ ++  I V   LM +YA C    +
Sbjct: 323 GNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCG-ETE 381

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A+ +F  ++ ++ V+W+ +I     +G     L +F+EM  + ++ N  +    + ACA
Sbjct: 382 KAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACA 441

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               +  GK IH   +K    S+L    +++ MY +    + A   F+ M+ +D++TWN+
Sbjct: 442 DLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNS 501

Query: 286 IIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I GY + G     ++MF K++    +P+  T   ++ ACA L  L  G  +H  IV+ G
Sbjct: 502 LINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLG 561

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEAIELF 403
            + +  + NALIDMYAKCG++  ++ +F++    +D VTW  ++  Y  +GH KEAI  F
Sbjct: 562 FESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSF 621

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
            +M      P+ + F++VL A ++     EG+ +   +       N  +   ++D+  + 
Sbjct: 622 HQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKC 681

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           G++  + +L   M  K D   W  +L     H
Sbjct: 682 GQLXYSEKLFNEMDHK-DTVSWNAMLSGYAVH 712



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 119/403 (29%), Positives = 205/403 (50%), Gaps = 8/403 (1%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T+LI  Y      + AR++FD  P    + W  MI  YT    +N+A  ++  MV   + 
Sbjct: 67  THLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLE 126

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P+ +T + VLKAC G  +L      HG   + GLE  +++   L+D+Y+     +  AR 
Sbjct: 127 PDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMG-DLKRARE 185

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           VF+ M  ++ V+W  +I G + S +    +  F+ M L GVE +  S             
Sbjct: 186 VFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSN 245

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           +   + IH  V +  F S   V N ++D+Y +   +  A + FD+M ++D ++W T++AG
Sbjct: 246 IELCRSIHGYVFRRDFSS--AVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAG 303

Query: 290 YEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           Y  +G   E L +F KMK      N  +  S   A A    L  G+++H   +++ +D +
Sbjct: 304 YAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSD 363

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           + +A  L+ MYAKCG    ++++F  +  RDLV W++++      G+ +EA+ LF EM  
Sbjct: 364 ILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQN 423

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE 451
             ++P+R+  M++L AC+   L    LK  KS++ + V  + +
Sbjct: 424 QKMKPNRVTLMSILPACADLSL----LKLGKSIHCFTVKADMD 462



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 93/197 (47%), Gaps = 6/197 (3%)

Query: 302 FSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK 361
           F  + S  ++ N   +  ++++C  L  L    Q+HA I+  G   + ++ + LI++Y+ 
Sbjct: 21  FPSLSSSTYT-NYLHYPRLLSSCKHLNPL---LQIHAQIIVSGFKHHHSITH-LINLYSL 75

Query: 362 CGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAV 421
                 ++ +F    +   + W SM+  Y       EA+E++  MV+ G+ PD+  F  V
Sbjct: 76  FHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFV 135

Query: 422 LTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481
           L AC+ A  + EG+ +   ++   +  +  I   +VD+  + G +K A E+   MP K D
Sbjct: 136 LKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMP-KRD 194

Query: 482 ESVWGPLLGACKEHRLP 498
              W  ++    +   P
Sbjct: 195 VVAWNAMIAGLSQSEDP 211



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 43/78 (55%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           +++  +LI  Y   G +  +  LF+EM  +D VSW  M++GY      ++A  +F  M  
Sbjct: 668 TLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQE 727

Query: 106 NEVNPNAFTLSSVLKACK 123
           ++V  ++ +  SVL AC+
Sbjct: 728 SQVQIDSVSFVSVLSACR 745


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 1047

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/562 (37%), Positives = 328/562 (58%), Gaps = 3/562 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           IL   L+  Y     I+ A   F      +VV W VM+  Y   +  N+++ +F +M   
Sbjct: 408 ILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQME 467

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + PN FT  S+L+ C  ++++     +H   +K G + ++YV + L+D+YA     +D+
Sbjct: 468 GIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLG-KLDH 526

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  +F  +K K+ VSWT +I GYA        L +FKEM  +G+  +   F+ A+ ACA 
Sbjct: 527 ALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAG 586

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              ++ G+ IHA     G+  +L V N+++ +Y R   + DA   FD++  KD I+WN++
Sbjct: 587 IQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSL 646

Query: 287 IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+G+ +SG   E L++FS+M       N FTF   ++A A +A +  G+Q+HA I++ G 
Sbjct: 647 ISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGH 706

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           D    ++N LI +YAKCGNI D+++ F EM +++ ++W +M+ GY  HGHG +A+ LF++
Sbjct: 707 DSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFED 766

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAG 464
           M + GV P+ + F+ VL+ACSH GLVDEG+KYF+SM + + + P  E Y CVVDLLGR+G
Sbjct: 767 MKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRSG 826

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
            +  A   ++ MP +PD  V   LL AC  H+  ++G+ AA  +L+L+P    TY++LSN
Sbjct: 827 LLSRARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLELEPKDSATYVLLSN 886

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           +YA  GKW    + R++M+  G KKE G SWIEV + V  F A D+   +   +Y  L  
Sbjct: 887 MYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVNNSVHAFFAGDQKHPNVDKIYEYLRD 946

Query: 585 LIRHMNETAYEPDIDCLIHDLE 606
           L     E  Y P  + L++D E
Sbjct: 947 LNELAAENGYIPQTNSLLNDAE 968



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 120/451 (26%), Positives = 231/451 (51%), Gaps = 4/451 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +L   L+  Y   G ++ A T+FDEMP R +  W  ++  + +     +   +F  M++ 
Sbjct: 104 VLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQE 163

Query: 107 EVNPNAFTLSSVLKACKGMK-SLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           +V P+  T + VL+ C G          +H   I  G E S++V N L+D+Y      ++
Sbjct: 164 KVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGF-LN 222

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +A+ VF+ ++ ++ VSW  +++G + SG     + +F +M   GV   PY FS  + AC 
Sbjct: 223 SAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACT 282

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
              +   G+ +H  V+K GF     V N+++ +Y R      A Q F+ M ++D +++N+
Sbjct: 283 KVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNS 342

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I+G  + G S + L +F KM  +   P+C T  S+++AC+++ AL  G+Q H+  ++ G
Sbjct: 343 LISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAG 402

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           +  ++ L  AL+D+Y KC +I  + + F      ++V W  M++ YG   +  E+ ++F 
Sbjct: 403 MSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFT 462

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
           +M   G+ P++  + ++L  CS    VD G +    +       N  +   ++D+  + G
Sbjct: 463 QMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLG 522

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           ++  A ++ + +  K D   W  ++    +H
Sbjct: 523 KLDHALKIFRRLKEK-DVVSWTAMIAGYAQH 552



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 121/510 (23%), Positives = 238/510 (46%), Gaps = 52/510 (10%)

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M    V  N+ T   +L  C      S+   +HG  +K G    + +   LMD+Y     
Sbjct: 59  MEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFG- 117

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            +D A  VF++M  +    W  ++  +         LG+F+ ML E V+ +  +++  +R
Sbjct: 118 DLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLR 177

Query: 223 ACASTGWVSFG--KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
            C   G V F   + IHA  I HG+ ++L V N ++D+Y +   L+ A + FD + ++D 
Sbjct: 178 GCGG-GDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDS 236

Query: 281 ITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           ++W  +++G  +SG   E + +F +M +    P  + F+S+++AC  +     G+Q+H  
Sbjct: 237 VSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGL 296

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
           ++++G      + NAL+ +Y++ GN   ++++F+ M  RD V++ S++ G    G+  +A
Sbjct: 297 VLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKA 356

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL 459
           +ELF +M    ++PD +   ++L+ACS  G +  G ++        ++ +  + G ++DL
Sbjct: 357 LELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDL 416

Query: 460 LGRAGRVKEAYELIKSMP----------------------------------FKPDESVW 485
             +   +K A+E   S                                     +P++  +
Sbjct: 417 YVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTY 476

Query: 486 GPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI--ILSNIYAAEGKWEEFAK-FRKIM 542
             +L  C   R  +LG+    +VL         Y+  +L ++YA  GK +   K FR++ 
Sbjct: 477 PSILRTCSSLRAVDLGEQIHTQVLK-TGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRL- 534

Query: 543 RGMGSKKEVGMSWIEVRDKVCGFIANDKMG 572
                K++  +SW  +   + G+  ++K  
Sbjct: 535 -----KEKDVVSWTAM---IAGYAQHEKFA 556



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 154/346 (44%), Gaps = 36/346 (10%)

Query: 183 TTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIK 242
           T L   Y++      G+     M   GV  N  ++   +  C S+GW S G  +H  ++K
Sbjct: 37  TALSYAYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILK 96

Query: 243 HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNM 301
            GF + + +   ++D+Y  F  L  A   FDEM  + L  WN ++  +     +   L +
Sbjct: 97  MGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGL 156

Query: 302 FSKMKSERFSPNCFTFTSIIAAC-ATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360
           F +M  E+  P+  T+  ++  C        C +++HA  +  G + +L + N LID+Y 
Sbjct: 157 FRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYF 216

Query: 361 KCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420
           K G ++ ++K+F  +  RD V+W +M+ G    G  +EA+ LF +M  SGV P   +F +
Sbjct: 217 KNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSS 276

Query: 421 VLTACSHAGLVDEG-------LKYFKSMNDYNVN-------------PNKEI-------- 452
           VL+AC+       G       LK   S+  Y  N             P +++        
Sbjct: 277 VLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRD 336

Query: 453 ---YGCVVDLLGRAGRVKEAYELIKSM---PFKPDESVWGPLLGAC 492
              Y  ++  L + G   +A EL K M     KPD      LL AC
Sbjct: 337 EVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSAC 382


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/552 (36%), Positives = 328/552 (59%), Gaps = 4/552 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +  +L+  Y     ++ AR +FDEM ERDV+SW  +I GY S     +  +VFV+M+ + 
Sbjct: 232 VGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSG 291

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           +  +  T+ SV   C   + +S    VH + +K          N+L+D+Y+ C   +D+A
Sbjct: 292 IEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCG-DLDSA 350

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           + VF +M  ++ VS+T++I GYA  G     + +F+EM  EG+  + Y+ +  +  CA  
Sbjct: 351 KAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARY 410

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  GK +H  + ++  G ++ V N+++DMY +   + +A   F EM  KD+I+WNTII
Sbjct: 411 RLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTII 470

Query: 288 AGYEKSG-SSECLNMFSKMKSE-RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
            GY K+  ++E L++F+ +  E RFSP+  T   ++ ACA+L+A   G+++H  I+R G 
Sbjct: 471 GGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGY 530

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             +  +AN+L+DMYAKCG +  +  +F +++ +DLV+WT M+ GYG HG GKEAI LF++
Sbjct: 531 FSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQ 590

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAG 464
           M ++G+  D I F+++L ACSH+GLVDEG ++F  M ++  + P  E Y C+VD+L R G
Sbjct: 591 MRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTG 650

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
            + +AY  I++MP  PD ++WG LL  C+ H    L +  A +V +L+P   G Y++++N
Sbjct: 651 DLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMAN 710

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           IYA   KWE+  + RK +   G +K  G SWIE++ +V  F+A D     T+ +   L  
Sbjct: 711 IYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRK 770

Query: 585 LIRHMNETAYEP 596
           +   M E  Y P
Sbjct: 771 VRARMIEEGYSP 782



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 122/436 (27%), Positives = 233/436 (53%), Gaps = 3/436 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S L + L   Y + G ++EA  +FDE+     + W +++         + +  +F +M+ 
Sbjct: 129 SNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMS 188

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           + V  +++T S V K+   ++S+     +HG  +K G      V NSL+  Y      +D
Sbjct: 189 SGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLK-NQRVD 247

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +AR VF++M  ++ +SW ++I GY  +G    GL VF +ML+ G+E++  +       CA
Sbjct: 248 SARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCA 307

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
            +  +S G+ +H+  +K  F       N++LDMY +   L  A   F EM+++ ++++ +
Sbjct: 308 DSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTS 367

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +IAGY + G + E + +F +M+ E  SP+ +T T+++  CA    L  G++VH  I    
Sbjct: 368 MIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKEND 427

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           L  ++ ++NAL+DMYAKCG++ +++ +FSEM  +D+++W +++ GY  + +  EA+ LF+
Sbjct: 428 LGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFN 487

Query: 405 EMVKSG-VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
            +++     PD      VL AC+     D+G +    +       ++ +   +VD+  + 
Sbjct: 488 LLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKC 547

Query: 464 GRVKEAYELIKSMPFK 479
           G +  A+ L   +  K
Sbjct: 548 GALLLAHMLFDDIASK 563



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 127/390 (32%), Positives = 215/390 (55%), Gaps = 13/390 (3%)

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENS----LMDVYATCCI 162
           +++P   TL SVL+ C   KSL +     G  +   + G+ +V +S     + +  T C 
Sbjct: 91  DIDPR--TLCSVLQLCADSKSLKD-----GKEVDNFIRGNGFVIDSNLGSKLSLMYTNCG 143

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            +  A  VF+++K +  + W  L+   A SG+  G +G+FK+M+  GVEM+ Y+FS   +
Sbjct: 144 DLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSK 203

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           + +S   V  G+ +H  ++K GFG    V NS++  Y +   +  A + FDEMTE+D+I+
Sbjct: 204 SFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVIS 263

Query: 283 WNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           WN+II GY  +G +E  L++F +M       +  T  S+ A CA    +S G+ VH+  V
Sbjct: 264 WNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGV 323

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           +          N L+DMY+KCG++  ++ +F EMSDR +V++TSM+ GY   G   EA++
Sbjct: 324 KACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVK 383

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461
           LF+EM + G+ PD     AVL  C+   L+DEG +  + + + ++  +  +   ++D+  
Sbjct: 384 LFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYA 443

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
           + G ++EA EL+ S     D   W  ++G 
Sbjct: 444 KCGSMQEA-ELVFSEMRVKDIISWNTIIGG 472



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 170/368 (46%), Gaps = 52/368 (14%)

Query: 211 EMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQ 270
           +++P +    ++ CA +  +  GK +   +  +GF  +  + + +  MY     L +A++
Sbjct: 91  DIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASR 150

Query: 271 YFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAA 329
            FDE+  +  + WN ++    KSG  S  + +F KM S     + +TF+ +  + ++L +
Sbjct: 151 VFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRS 210

Query: 330 LSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIG 389
           +  G+Q+H  I++ G     ++ N+L+  Y K   +  ++K+F EM++RD+++W S++ G
Sbjct: 211 VHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIING 270

Query: 390 YGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLV------------------ 431
           Y ++G  ++ + +F +M+ SG+  D    ++V   C+ + L+                  
Sbjct: 271 YVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRE 330

Query: 432 -----------------DEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
                            D     F+ M+D +V      Y  ++    R G   EA +L +
Sbjct: 331 DRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVS----YTSMIAGYAREGLAGEAVKLFE 386

Query: 475 SMP---FKPDESVWGPLLGACKEHRLPNLGKLAALRVLD-LKPNMMGTYIILSN----IY 526
            M      PD      +L  C  +RL + GK    RV + +K N +G  I +SN    +Y
Sbjct: 387 EMEEEGISPDVYTVTAVLNCCARYRLLDEGK----RVHEWIKENDLGFDIFVSNALMDMY 442

Query: 527 AAEGKWEE 534
           A  G  +E
Sbjct: 443 AKCGSMQE 450


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/552 (36%), Positives = 328/552 (59%), Gaps = 4/552 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +  +L+  Y     ++ AR +FDEM ERDV+SW  +I GY S     +  +VFV+M+ + 
Sbjct: 81  VGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSG 140

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           +  +  T+ SV   C   + +S    VH + +K          N+L+D+Y+ C   +D+A
Sbjct: 141 IEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCG-DLDSA 199

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           + VF +M  ++ VS+T++I GYA  G     + +F+EM  EG+  + Y+ +  +  CA  
Sbjct: 200 KAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARY 259

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  GK +H  + ++  G ++ V N+++DMY +   + +A   F EM  KD+I+WNTII
Sbjct: 260 RLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTII 319

Query: 288 AGYEKSG-SSECLNMFSKMKSE-RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
            GY K+  ++E L++F+ +  E RFSP+  T   ++ ACA+L+A   G+++H  I+R G 
Sbjct: 320 GGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGY 379

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             +  +AN+L+DMYAKCG +  +  +F +++ +DLV+WT M+ GYG HG GKEAI LF++
Sbjct: 380 FSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQ 439

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAG 464
           M ++G+  D I F+++L ACSH+GLVDEG ++F  M ++  + P  E Y C+VD+L R G
Sbjct: 440 MRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTG 499

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
            + +AY  I++MP  PD ++WG LL  C+ H    L +  A +V +L+P   G Y++++N
Sbjct: 500 DLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMAN 559

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           IYA   KWE+  + RK +   G +K  G SWIE++ +V  F+A D     T+ +   L  
Sbjct: 560 IYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRK 619

Query: 585 LIRHMNETAYEP 596
           +   M E  Y P
Sbjct: 620 VRARMIEEGYSP 631



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 115/413 (27%), Positives = 221/413 (53%), Gaps = 3/413 (0%)

Query: 69  FDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSL 128
           FDE+     + W +++         + +  +F +M+ + V  +++T S V K+   ++S+
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 129 SNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITG 188
                +HG  +K G      V NSL+  Y      +D+AR VF++M  ++ +SW ++I G
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLK-NQRVDSARKVFDEMTERDVISWNSIING 119

Query: 189 YAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSN 248
           Y  +G    GL VF +ML+ G+E++  +       CA +  +S G+ +H+  +K  F   
Sbjct: 120 YVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRE 179

Query: 249 LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKS 307
               N++LDMY +   L  A   F EM+++ ++++ ++IAGY + G + E + +F +M+ 
Sbjct: 180 DRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE 239

Query: 308 ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISD 367
           E  SP+ +T T+++  CA    L  G++VH  I    L  ++ ++NAL+DMYAKCG++ +
Sbjct: 240 EGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQE 299

Query: 368 SQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG-VRPDRIVFMAVLTACS 426
           ++ +FSEM  +D+++W +++ GY  + +  EA+ LF+ +++     PD      VL AC+
Sbjct: 300 AELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACA 359

Query: 427 HAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
                D+G +    +       ++ +   +VD+  + G +  A+ L   +  K
Sbjct: 360 SLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASK 412



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 109/322 (33%), Positives = 184/322 (57%), Gaps = 2/322 (0%)

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F+++K +  + W  L+   A SG+  G +G+FK+M+  GVEM+ Y+FS   ++ +S   V
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
             G+ +H  ++K GFG    V NS++  Y +   +  A + FDEMTE+D+I+WN+II GY
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 291 EKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
             +G +E  L++F +M       +  T  S+ A CA    +S G+ VH+  V+       
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 180

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
              N L+DMY+KCG++  ++ +F EMSDR +V++TSM+ GY   G   EA++LF+EM + 
Sbjct: 181 RFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 240

Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
           G+ PD     AVL  C+   L+DEG +  + + + ++  +  +   ++D+  + G ++EA
Sbjct: 241 GISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEA 300

Query: 470 YELIKSMPFKPDESVWGPLLGA 491
            EL+ S     D   W  ++G 
Sbjct: 301 -ELVFSEMRVKDIISWNTIIGG 321


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/563 (36%), Positives = 325/563 (57%), Gaps = 2/563 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            L T  + + ++ G I  AR +FDE PE  V  W  +I GY+S N    A  ++  M  +
Sbjct: 104 FLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQAS 163

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            VNP+ FTL  VLKAC G+  L     VHG   + G E  ++V+N L+ +YA C   ++ 
Sbjct: 164 GVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCG-RVEQ 222

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR+VF  +  +N VSWT++I+GY  +G     L +F +M    V+ +  +    +RA   
Sbjct: 223 ARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTD 282

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  GK IH  V+K G      ++ S+  MY +   +  A  +FD+M   +++ WN +
Sbjct: 283 VEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAM 342

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+GY K+G ++E + +F +M S+    +  T  S I ACA + +L   + +   I +   
Sbjct: 343 ISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEY 402

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             ++ +  ALIDM+AKCG++  ++++F    D+D+V W++M++GYG HG G++AI+LF  
Sbjct: 403 RNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYA 462

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M ++GV P+ + F+ +LTAC+H+GLV+EG + F SM  Y +    + Y CVVDLLGR+G 
Sbjct: 463 MKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSMKYYGIEARHQHYACVVDLLGRSGH 522

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           + EAY+ I +MP +P  SVWG LLGACK +R   LG+ AA ++  L P   G Y+ LSN+
Sbjct: 523 LNEAYDFITTMPIEPGVSVWGALLGACKIYRHVTLGEYAAEQLFSLDPFNTGHYVQLSNL 582

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           YA+   W+  AK R +MR  G  K++G S IE+  K+  F   DK     + ++  LE L
Sbjct: 583 YASSRLWDSVAKVRILMREKGLSKDLGYSLIEINGKLQAFRVGDKSHPRFKEIFEELESL 642

Query: 586 IRHMNETAYEPDIDCLIHDLEGE 608
            R + E  + P I+ ++HDL  E
Sbjct: 643 ERRLKEAGFIPHIESVLHDLNQE 665



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 88/190 (46%), Gaps = 3/190 (1%)

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
           Q+HA +V  GL  +  L    ++     G I  ++K+F E  +  +  W +++ GY +H 
Sbjct: 89  QIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHN 148

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG 454
              +AIE++  M  SGV PD      VL ACS   +++ G +    +       +  +  
Sbjct: 149 FFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQN 208

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLP--NLGKLAALRVLDLK 512
            +V L  + GRV++A  + + +  +   S W  ++    ++ LP   L     +R  ++K
Sbjct: 209 GLVALYAKCGRVEQARIVFEGLDDRNIVS-WTSMISGYGQNGLPMEALRIFGQMRQRNVK 267

Query: 513 PNMMGTYIIL 522
           P+ +    +L
Sbjct: 268 PDWIALVSVL 277


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/553 (36%), Positives = 324/553 (58%), Gaps = 4/553 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +  +LI +YF  G +E AR LFDE+ +RDVVSW  MI+G T           F++M+   
Sbjct: 195 VVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLG 254

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V+ ++ TL +VL AC  + +L+    +H   +K G  G +   N+L+D+Y+ C  +++ A
Sbjct: 255 VDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCG-NLNGA 313

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             VF  M     VSWT++I  +   G  Y  +G+F EM  +G+  + Y+ +  V ACA +
Sbjct: 314 NEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACS 373

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  G+ +H  + K+  GSNLPV N++++MY +   + +AN  F ++  K++++WNT+I
Sbjct: 374 NSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMI 433

Query: 288 AGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            GY + S  +E L +F  M+ ++  P+  T   ++ ACA LAAL  G+++H  I+R+G  
Sbjct: 434 GGYSQNSLPNEALQLFLDMQ-KQLKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYF 492

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            +L +A AL+DMY KCG +  +Q++F  +  +D++ WT M+ GYG HG GKEAI  F++M
Sbjct: 493 SDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYGMHGFGKEAISTFEKM 552

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGR 465
             +G+ P+   F ++L AC+H+GL+ EG K F SM ++ N+ P  E Y C+VDLL R+G 
Sbjct: 553 RVAGIEPEESSFTSILYACTHSGLLKEGWKLFDSMKSECNIEPKLEHYACMVDLLIRSGN 612

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           +  AY+ I++MP KPD ++WG LL  C+ H    L +  A  + +L+P     Y++L+N+
Sbjct: 613 LSRAYKFIETMPIKPDAAIWGALLSGCRIHHDVELAEKVAEHIFELEPENTRYYVLLANV 672

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           YA   KWEE  K ++ +   G K + G SWIEV+ K   F A D      + +  +L  L
Sbjct: 673 YAEAEKWEEVKKIQRRISKGGLKNDQGCSWIEVQGKFNIFFAGDTSHPQAKMIDSLLRKL 732

Query: 586 IRHMNETAYEPDI 598
              MN   Y   I
Sbjct: 733 TMKMNRGGYSNKI 745



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 128/470 (27%), Positives = 250/470 (53%), Gaps = 6/470 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +L   L+  Y + G + + R +FD +    +  W ++++ Y     + ++  +F +M   
Sbjct: 93  VLGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQEL 152

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            +  +++T + VLK       +     VHG  +K G      V NSL+  Y  C   +++
Sbjct: 153 GIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCG-EVES 211

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR++F+++  ++ VSW ++I+G   +G    GL  F +ML  GV+++  +    + ACA+
Sbjct: 212 ARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACAN 271

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G ++ G+ +HA  +K GF   +   N++LDMY +   L+ AN+ F +M E  +++W +I
Sbjct: 272 VGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSI 331

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           IA + + G   E + +F +M+S+   P+ +  TS++ ACA   +L  G++VH  I +  +
Sbjct: 332 IAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNM 391

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             NL ++NAL++MYAKCG++ ++  IFS++  +++V+W +M+ GY  +    EA++LF +
Sbjct: 392 GSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLD 451

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M K  ++PD +    VL AC+    +++G +    +       +  +   +VD+  + G 
Sbjct: 452 MQKQ-LKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFSDLHVACALVDMYVKCGL 510

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKP 513
           +  A +L   +P K D  +W  ++     H      +     +RV  ++P
Sbjct: 511 LVLAQQLFDMIP-KKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEP 559



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 124/439 (28%), Positives = 230/439 (52%), Gaps = 10/439 (2%)

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
           R+E+  N  T  SVL+ C  +KSL +   VH +    G+     +   L+ +Y  C   +
Sbjct: 52  RSELELN--TYCSVLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCG-DL 108

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
              R +F+ +       W  L++ YA  GN    +G+F++M   G+  + Y+F+  ++  
Sbjct: 109 VKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGF 168

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           A++  V   K +H  V+K GFGS   V+NS++  Y +   +  A   FDE++++D+++WN
Sbjct: 169 AASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWN 228

Query: 285 TIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           ++I+G   +G S   L  F +M +     +  T  +++ ACA +  L+ G+ +HA  V+ 
Sbjct: 229 SMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKA 288

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G  G +   N L+DMY+KCGN++ + ++F +M +  +V+WTS++  +   G   EAI LF
Sbjct: 289 GFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLF 348

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
           DEM   G+RPD     +V+ AC+ +  +D+G +    +   N+  N  +   ++++  + 
Sbjct: 349 DEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKC 408

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRV-LDLKPNMMGTYIIL 522
           G ++EA  +   +P K   S W  ++G   ++ LPN     AL++ LD++  +    + +
Sbjct: 409 GSMEEANLIFSQLPVKNIVS-WNTMIGGYSQNSLPN----EALQLFLDMQKQLKPDDVTM 463

Query: 523 SNIYAAEGKWEEFAKFRKI 541
           + +  A        K R+I
Sbjct: 464 ACVLPACAGLAALEKGREI 482



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 108/367 (29%), Positives = 182/367 (49%), Gaps = 6/367 (1%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G  +    L+  Y   G +  A  +F +M E  +VSWT +IA +     H +A  +F EM
Sbjct: 292 GGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEM 351

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
               + P+ + ++SV+ AC    SL     VH    K  +  ++ V N+LM++YA C  S
Sbjct: 352 QSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCG-S 410

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           M+ A L+F+ +  KN VSW T+I GY+ +      L +F +M  + ++ +  + +  + A
Sbjct: 411 MEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQKQ-LKPDDVTMACVLPA 469

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           CA    +  G+ IH  +++ G+ S+L V  +++DMY +   L  A Q FD + +KD+I W
Sbjct: 470 CAGLAALEKGREIHGHILRKGYFSDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILW 529

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
             +IAGY   G   E ++ F KM+     P   +FTSI+ AC     L  G ++   +  
Sbjct: 530 TVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLLKEGWKLFDSMKS 589

Query: 343 R-GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHGHGKEAI 400
              ++  L     ++D+  + GN+S + K    M  + D   W +++ G   H H  E  
Sbjct: 590 ECNIEPKLEHYACMVDLLIRSGNLSRAYKFIETMPIKPDAAIWGALLSGCRIH-HDVELA 648

Query: 401 ELFDEMV 407
           E   E +
Sbjct: 649 EKVAEHI 655



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 9/191 (4%)

Query: 306 KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNI 365
           +S+R      T+ S++  CA L +L  G++VH+ I   G+  +  L   L+ MY  CG++
Sbjct: 49  RSQRSELELNTYCSVLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDL 108

Query: 366 SDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTAC 425
              ++IF  + +  +  W  +M  Y   G+ +E++ LF++M + G+R D   F  VL   
Sbjct: 109 VKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGF 168

Query: 426 SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA----GRVKEAYELIKSMPFKPD 481
           + +  V E     K ++ Y +      Y  VV+ L  A    G V+ A  L   +  + D
Sbjct: 169 AASAKVRE----CKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDR-D 223

Query: 482 ESVWGPLLGAC 492
              W  ++  C
Sbjct: 224 VVSWNSMISGC 234


>gi|297735121|emb|CBI17483.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/565 (37%), Positives = 333/565 (58%), Gaps = 12/565 (2%)

Query: 53  IKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM-VRNEVNPN 111
           +K     G +  AR +FD+M ++D +SWT +I+GY + N  ++A  +F  M V + +  +
Sbjct: 63  LKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRID 122

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
            F LS   KAC     ++   L+HG A+K GL  S++V ++L+D+Y T    +   R VF
Sbjct: 123 PFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMY-TKNGKIFEGRRVF 181

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           ++M  +N VSWT +ITG   +G     L  F EM    VE + Y+F+IA++ACA +G ++
Sbjct: 182 HEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALN 241

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
           +G+ IHA  +K GF  +  V N++  MY +   L      F++M+ +D+++W TII    
Sbjct: 242 YGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLV 301

Query: 292 KSGSSEC-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           + G  EC +  F +M+    SPN +TF ++I+ CA LA +  G+Q+HA I+  GL  +L+
Sbjct: 302 QMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLS 361

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           + N+++ MYAKCG ++ S  IF EM+ RD+V+W++++ GY   GH  EA EL   M   G
Sbjct: 362 VENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEG 421

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLK---YFKSMN------DYNVNPNKEIYGCVVDLLG 461
            +P      +VL+AC +  +++ G +   Y  S+        Y ++P+KE YGC++DLL 
Sbjct: 422 PKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMKYQISPSKEHYGCMIDLLC 481

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           RAGR+ +A  +I++MPF  D+ VW  LL AC+ H     G+  A R+L L+PN  GT+I 
Sbjct: 482 RAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHIT 541

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGV 581
           L+NIYA++GKW E A  RK+M+  G  KE G SWI+V+D V  F+A D+     + +Y +
Sbjct: 542 LANIYASKGKWREAADIRKLMKSKGVIKEPGWSWIKVKDLVFAFVAGDRSHPQGEDIYNM 601

Query: 582 LEMLIRHMNETAYEPDIDCLIHDLE 606
           L++L           +   L +DLE
Sbjct: 602 LDLLASRTELADCVQETGFLPYDLE 626



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 114/359 (31%), Positives = 190/359 (52%), Gaps = 14/359 (3%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + + L+  Y   G I E R +F EMP R+VVSWT +I G      + +A   F EM R+ 
Sbjct: 160 VGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSR 219

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V  +++T +  LKAC    +L+    +H  A+K+G + S +V N+L  +Y  C   ++  
Sbjct: 220 VEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCG-KLEYG 278

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             +F  M  ++ VSWTT+IT     G     +  F  M    V  N Y+F+  +  CA+ 
Sbjct: 279 LTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANL 338

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             + +G+ +HA ++  G  ++L V NSI+ MY +   L+ ++  F EMT +D+++W+TII
Sbjct: 339 ARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTII 398

Query: 288 AGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           AGY + G  SE   + S M+ E   P  F   S+++AC  +A L  G+Q+HA ++  GL+
Sbjct: 399 AGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLE 458

Query: 347 GNLALA----------NALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHG 394
            + A+             +ID+  + G +SD++ +   M   RD V W++++     HG
Sbjct: 459 -HTAMKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHG 516



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 136/282 (48%), Gaps = 18/282 (6%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S +A  L   Y   G +E   TLF++M  RDVVSWT +I           A   F+ M  
Sbjct: 259 SFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRE 318

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           ++V+PN +T ++V+  C  +  +     +H + +  GL  S+ VENS+M +YA C   + 
Sbjct: 319 SDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCG-QLT 377

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           ++ ++F++M  ++ VSW+T+I GY+  G+      +   M +EG +   ++ +  + AC 
Sbjct: 378 SSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACG 437

Query: 226 STGWVSFGKLIHAAVI---------KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
           +   +  GK +HA V+         K+    +      ++D+ CR   LSDA    + M 
Sbjct: 438 NMAILEHGKQLHAYVLSIGLEHTAMKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMP 497

Query: 277 -EKDLITWNTIIAGYEKSGSSECLNMFSKMKSER---FSPNC 314
             +D + W+T++      G  E      +  +ER     PNC
Sbjct: 498 FHRDDVVWSTLLRACRVHGDVE----RGRRTAERILQLEPNC 535



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 137/274 (50%), Gaps = 9/274 (3%)

Query: 247 SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKM 305
           ++LP  N  L    +   L +A + FD+M++KD I+W T+I+GY   + SSE L +F  M
Sbjct: 54  TDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNM 113

Query: 306 KSE---RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362
           + E   R  P  F  +    AC   + ++ G+ +H   V+ GL  ++ + +AL+DMY K 
Sbjct: 114 RVESGLRIDP--FILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKN 171

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
           G I + +++F EM  R++V+WT+++ G    G+ KEA+  F EM +S V  D   F   L
Sbjct: 172 GKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIAL 231

Query: 423 TACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDE 482
            AC+ +G ++ G +          + +  +   +  +  + G+++    L + M  + D 
Sbjct: 232 KACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMR-DV 290

Query: 483 SVWGPLLGACKEHRLPNLGKLAALRVL--DLKPN 514
             W  ++    +         A +R+   D+ PN
Sbjct: 291 VSWTTIITTLVQMGQEECAVQAFIRMRESDVSPN 324


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/626 (34%), Positives = 341/626 (54%), Gaps = 69/626 (11%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
            ++ +Y   G ++ +   FD +P+RD VSWT MI GY +   +++A  +  EM+R  + P
Sbjct: 85  TVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEP 144

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC---------- 160
           + FTL++VL +    + L     VH   +K GL G++ V NSL+++YA C          
Sbjct: 145 SQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVF 204

Query: 161 --------------------CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLG 200
                                  MD A   F  M  ++ V+W ++I+GY   G     L 
Sbjct: 205 DRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALD 264

Query: 201 VFKEMLLEGVEMNPYSFSIA--VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDM 258
           +F +ML + + ++P  F++A  + ACA+   +  G+ IH+ ++  GF  +  V+N+++ M
Sbjct: 265 MFSKMLRDSM-LSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISM 323

Query: 259 YCR-----------------------FDCLSD----------ANQYFDEMTEKDLITWNT 285
           Y R                       F  L D          A   FD + ++D++ W  
Sbjct: 324 YSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTA 383

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I GYE+ G   E +N+F  M  E   PN +T  ++++  ++LA+L  G+Q+H   V+ G
Sbjct: 384 MIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSG 443

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEAIELF 403
              +++++NALI MYAK G+I+ + + F  +  +RD V+WTSM+I    HGH +EA+ELF
Sbjct: 444 EIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELF 503

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYN-VNPNKEIYGCVVDLLGR 462
           + M+  G+RPD I ++ V +AC+HAGLV++G +YF  M D + + P    Y C+VDL GR
Sbjct: 504 ETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGR 563

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AG ++EA E I+ MP +PD   WG LL AC+ ++  +LGK+AA R+L L+P   G Y  L
Sbjct: 564 AGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENSGAYSAL 623

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           +N+Y+A GKWEE AK RK M+    KKE G SWIEV+ KV  F   D +      +Y  +
Sbjct: 624 ANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHAFGVEDGIHPQKNEIYITM 683

Query: 583 EMLIRHMNETAYEPDIDCLIHDLEGE 608
           + +   + +  Y PD   ++HDLE E
Sbjct: 684 KKIWDEIKKMGYVPDTASVLHDLEEE 709



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 137/495 (27%), Positives = 234/495 (47%), Gaps = 114/495 (23%)

Query: 110 PNAFTLSSVLKACKGM--KSLS------NAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
           P   +LS++L+ C  +  KS++       A LVH   IK GL  S+Y+ N+LM+VY+   
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTG 63

Query: 162 ISMDNARLVFNDM------KW-------------------------KNDVSWTTLITGYA 190
            ++ +AR +F++M       W                         ++ VSWTT+I GY 
Sbjct: 64  YAL-HARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYK 122

Query: 191 HSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLP 250
           + G  +  + +  EM+ EG+E + ++ +  + + A+T  +  GK +H+ ++K G   N+ 
Sbjct: 123 NIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVS 182

Query: 251 VMNSILDMYCR----------FD--CLSDANQY-------------------FDEMTEKD 279
           V NS+L+MY +          FD   + D + +                   F++M E+D
Sbjct: 183 VSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERD 242

Query: 280 LITWNTIIAGYEKSGSS-ECLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
           ++TWN++I+GY + G     L+MFSKM +    SP+ FT  S+++ACA L  L  G+Q+H
Sbjct: 243 IVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIH 302

Query: 338 AGIVRRGLDGNLALANALIDMYAKC---------------------------------GN 364
           + IV  G D +  + NALI MY++C                                 G+
Sbjct: 303 SHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGD 362

Query: 365 ISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTA 424
           +++++ IF  + DRD+V WT+M++GY  HG   EAI LF  MV    RP+     A+L+ 
Sbjct: 363 MNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSV 422

Query: 425 CSHAGLVDEGLKY----FKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKP 480
            S    +  G +      KS   Y+V+    +   ++ +  +AG +  A      +  + 
Sbjct: 423 ASSLASLGHGKQIHGSAVKSGEIYSVS----VSNALITMYAKAGSITSASRAFDLIRCER 478

Query: 481 DESVWGPLLGACKEH 495
           D   W  ++ A  +H
Sbjct: 479 DTVSWTSMIIALAQH 493



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 116/492 (23%), Positives = 208/492 (42%), Gaps = 101/492 (20%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIA----------------- 85
           +G   ++ +L+  Y   G    A+ +FD M  +D+ SW  MIA                 
Sbjct: 178 RGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQ 237

Query: 86  --------------GYTSFNCHNQAWTVFVEMVRNE-VNPNAFTLSSVLKACKGMKSLSN 130
                         GY       +A  +F +M+R+  ++P+ FTL+SVL AC  ++ L  
Sbjct: 238 MAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCI 297

Query: 131 AALVHGMAIKEGLEGSIYVENSLMDVYATC------------------------------ 160
              +H   +  G + S  V N+L+ +Y+ C                              
Sbjct: 298 GEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGY 357

Query: 161 --CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFS 218
                M+ A+ +F+ +K ++ V+WT +I GY   G     + +F+ M+ E    N Y+ +
Sbjct: 358 IKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLA 417

Query: 219 IAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-E 277
             +   +S   +  GK IH + +K G   ++ V N+++ MY +   ++ A++ FD +  E
Sbjct: 418 AMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCE 477

Query: 278 KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQV 336
           +D ++W ++I    + G + E L +F  M  E   P+  T+  + +AC            
Sbjct: 478 RDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSAC-----------T 526

Query: 337 HAGIVRRG------------LDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTW 383
           HAG+V +G            +   L+    ++D++ + G + ++Q+   +M  + D+VTW
Sbjct: 527 HAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTW 586

Query: 384 TSMMIG---YGAHGHGKEAIE--LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYF 438
            S++     Y     GK A E  L  E   SG       + A+    S  G  +E  K  
Sbjct: 587 GSLLSACRVYKNIDLGKVAAERLLLLEPENSG------AYSALANLYSACGKWEEAAKIR 640

Query: 439 KSMNDYNVNPNK 450
           KSM D  V   +
Sbjct: 641 KSMKDGRVKKEQ 652


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/547 (37%), Positives = 327/547 (59%), Gaps = 4/547 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y     IE+A  +FDEMP+RD++SW  +I G  S   +++A  +FV M       +
Sbjct: 25  LISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCASNGLYDKAVELFVRMWLEGQELD 84

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
           + TL SV+ AC          +VHG +++ GL     + N+L+D+Y+ C     +   +F
Sbjct: 85  STTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNALLDMYSNCS-DWRSTNKIF 143

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
            +M+ KN VSWT +IT Y  +G+     G+F+EM LEG+  + ++ + A+ A A    + 
Sbjct: 144 RNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLK 203

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            GK +H   I++G    LPV N++++MY +   + +A   FD +T+KD I+WNT+I GY 
Sbjct: 204 HGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYS 263

Query: 292 KSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           +S  ++E   +F++M  +   PN  T   I+ A A+L++L  G+++HA  VRRG   +  
Sbjct: 264 RSNLANEAFTLFNEMLLQ-LRPNAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDNF 322

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           +ANAL+DMY KCG +  ++++F  +++++L++WT M+ GYG HG G++AI LF++M  SG
Sbjct: 323 VANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSG 382

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
           ++PD   F A+L ACSH+GL DEG ++F +M N++ + P  + Y C+VDLL   G +KEA
Sbjct: 383 IQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLKEA 442

Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529
           YE I++MP +PD S+W  LL  C+ HR   L +  A  V +L+P   G Y++L+NIYA  
Sbjct: 443 YEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAEMVFELEPENTGYYVLLANIYAEA 502

Query: 530 GKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHM 589
            +WE   K +  + G G ++  G SWIEVR K   F A ++       +   L+ + R M
Sbjct: 503 ERWEAVRKLKNKVGGRGLRENTGCSWIEVRGKAHIFFAENRNHPQGMRIAEFLDDVARRM 562

Query: 590 NETAYEP 596
            E  ++P
Sbjct: 563 QEEGHDP 569



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/404 (26%), Positives = 192/404 (47%), Gaps = 37/404 (9%)

Query: 133 LVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHS 192
           +VHG  +K G      V N+L+  YA     +++A +VF++M  ++ +SW ++I G A +
Sbjct: 5   VVHGYLVKYGFGAQCAVCNALISFYAKSN-RIEDALMVFDEMPQRDIISWNSIIGGCASN 63

Query: 193 GNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVM 252
           G     + +F  M LEG E++  +    + AC  + +   G ++H   ++ G  S   + 
Sbjct: 64  GLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLG 123

Query: 253 NSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFS 311
           N++LDMY         N+ F  M +K++++W  +I  Y ++G   +   +F +M  E   
Sbjct: 124 NALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIR 183

Query: 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKI 371
           P+ F  TS + A A   +L  G+ VH   +R G++  L +ANAL++MY KCG + +++ I
Sbjct: 184 PDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFI 243

Query: 372 FSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS----- 426
           F  ++ +D ++W +++ GY       EA  LF+EM+   +RP+ +    +L A +     
Sbjct: 244 FDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQ-LRPNAVTMACILPAAASLSSL 302

Query: 427 ------HAGLVDEG--------------------LKYFKSMNDYNVNPNKEIYGCVVDLL 460
                 HA  V  G                    L   + + D   N N   +  ++   
Sbjct: 303 ERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGY 362

Query: 461 GRAGRVKEA---YELIKSMPFKPDESVWGPLLGACKEHRLPNLG 501
           G  GR ++A   +E +K    +PD   +  +L AC    L + G
Sbjct: 363 GMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEG 406



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/296 (31%), Positives = 149/296 (50%), Gaps = 11/296 (3%)

Query: 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEK 292
           G ++H  ++K+GFG+   V N+++  Y + + + DA   FDEM ++D+I+WN+II G   
Sbjct: 3   GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62

Query: 293 SG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLAL 351
           +G   + + +F +M  E    +  T  S++ AC        G  VH   VR GL    +L
Sbjct: 63  NGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSL 122

Query: 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411
            NAL+DMY+ C +   + KIF  M  +++V+WT+M+  Y   GH  +   LF EM   G+
Sbjct: 123 GNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGI 182

Query: 412 RPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE----IYGCVVDLLGRAGRVK 467
           RPD     + L A   AG  +E LK+ KS++ Y +    E    +   ++++  + G ++
Sbjct: 183 RPDVFAITSALDA--FAG--NESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYME 238

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRLPNLG-KLAALRVLDLKPNMMGTYIIL 522
           EA   I     K D   W  L+G      L N    L    +L L+PN +    IL
Sbjct: 239 EA-RFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQLRPNAVTMACIL 293



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 133/244 (54%), Gaps = 4/244 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A  L++ Y   G +EEAR +FD + ++D +SW  +I GY+  N  N+A+T+F EM+  +
Sbjct: 223 VANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLL-Q 281

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + PNA T++ +L A   + SL     +H  A++ G     +V N+L+D+Y  C  ++  A
Sbjct: 282 LRPNAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCG-ALLLA 340

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R +F+ +  KN +SWT +I GY   G G   + +F++M   G++ +  SFS  + AC+ +
Sbjct: 341 RRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHS 400

Query: 228 GWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLITWNT 285
           G    G +  +A   +H     L     ++D+ C    L +A ++ + M  E D   W +
Sbjct: 401 GLRDEGWRFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVS 460

Query: 286 IIAG 289
           ++ G
Sbjct: 461 LLRG 464



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 44/77 (57%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + +A  L+  Y   G +  AR LFD +  ++++SWT+MIAGY        A  +F +M  
Sbjct: 321 NFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKG 380

Query: 106 NEVNPNAFTLSSVLKAC 122
           + + P+A + S++L AC
Sbjct: 381 SGIQPDAGSFSAILYAC 397


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/562 (36%), Positives = 332/562 (59%), Gaps = 3/562 (0%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108
           A+ +I  Y +  L+ EA  +F  +    V++W  +I  +T  +  ++A   FVEM  +  
Sbjct: 42  ASIVISIYTNLKLLHEALLVFKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRASGR 101

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
            P+     SVLK+C  M  L     VHG  ++ G++  +Y  N+LM++Y+   + +D+ R
Sbjct: 102 CPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKL-LGIDSVR 160

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            VF  M  K+ VS+ T+I GYA SG     L + +EM    ++ + ++ S  +   +   
Sbjct: 161 KVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYV 220

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            V  GK IH  VI+ G  S++ + +S++DMY +   + D+ + F  +  +D I+WN+++A
Sbjct: 221 DVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVA 280

Query: 289 GYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           GY ++G  +E L +F +M S +  P    F+S+I ACA LA L  G+Q+H  ++R G   
Sbjct: 281 GYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGR 340

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           N+ +A+AL+DMY+KCGNI  ++KIF  M+  D V+WT++++G+  HGHG EA+ LF+EM 
Sbjct: 341 NIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMK 400

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRV 466
           + GV+P+++ F+AVLTACSH GLVDE   YF SM   Y +N   E Y  V DLLGRAG++
Sbjct: 401 RQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKL 460

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
           +EAY+ I  M  +P  SVW  LL +C  H+   L +  A ++  +    MG Y+++ N+Y
Sbjct: 461 EEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTIDSENMGAYVLMCNMY 520

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           A+ G+W+E AK R  +R  G +K+   SWIE+++K  GF++ D+       +   L+ ++
Sbjct: 521 ASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDRINEFLKAVM 580

Query: 587 RHMNETAYEPDIDCLIHDLEGE 608
             M +  Y  D   ++HD++ E
Sbjct: 581 EQMEKEGYVADTSGVLHDVDEE 602



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 142/285 (49%), Gaps = 16/285 (5%)

Query: 13  FHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPS---ILATNLIKSYFDEGLIEEARTLF 69
           F    + PI  + +  +K   I     +I KG      + ++L+  Y     IE++  +F
Sbjct: 207 FTLSSVLPIFSEYVDVLKGKEIHG--YVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVF 264

Query: 70  DEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLS 129
             +  RD +SW  ++AGY     +N+A  +F +MV  +V P A   SSV+ AC  + +L 
Sbjct: 265 SHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLH 324

Query: 130 NAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGY 189
               +HG  ++ G   +I++ ++L+D+Y+ C  ++  AR +F+ M   ++VSWT +I G+
Sbjct: 325 LGKQLHGYVLRGGFGRNIFIASALVDMYSKCG-NIQAARKIFDRMNLHDEVSWTAIIMGH 383

Query: 190 AHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG-----WVSFGKLIHAAVIKHG 244
           A  G+G+  + +F+EM  +GV+ N  +F   + AC+  G     W  F  +       +G
Sbjct: 384 ALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKV----YG 439

Query: 245 FGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLITWNTIIA 288
               L    ++ D+  R   L +A  +  +M  E     W+T+++
Sbjct: 440 LNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLS 484


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 225/647 (34%), Positives = 347/647 (53%), Gaps = 79/647 (12%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMP--ERDVVSWTVMIAGYTSFNCHNQAWT 98
           IP+   +  T LI +Y   G ++ +R +F + P   RD V +  MI  Y+  +  + A  
Sbjct: 74  IPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIE 133

Query: 99  VFVEMVRNEVNPNAFTLSSVLKACKGM-KSLSNAALVHGMAIKEGLEGSIYVENSLMDVY 157
           +F +M R+   P+ +T +SVL A   + +   +   +H   +K G      V N+L+  Y
Sbjct: 134 LFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSY 193

Query: 158 ATCCIS--------MDNARLVFNDMKWKNDVSWTTLITGY-------------------- 189
             C  S        M  AR +F++M  ++++SWTT+ITGY                    
Sbjct: 194 VKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKL 253

Query: 190 -----------AHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHA 238
                      AH G       +F++M++  ++++ ++F+  +  CA+ G    GK +HA
Sbjct: 254 GVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHA 313

Query: 239 AVIKH----GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY---- 290
             +K          +PV N+++  Y +   +  A + F++M E+DL++WN I++GY    
Sbjct: 314 YFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVR 373

Query: 291 -------------EK---------SG------SSECLNMFSKMKSERFSPNCFTFTSIIA 322
                        EK         SG      + E L  F++MK + F P  + F   I 
Sbjct: 374 CMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAII 433

Query: 323 ACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVT 382
           +C+ L +L  G+Q+HA +VR G + +L+  NALI MYA+CG +  +  +F  M   D ++
Sbjct: 434 SCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAIS 493

Query: 383 WTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM- 441
           W +M+   G HG G +AIELF+EM+K G+ PDRI F+ V++ACSHAGLV EG KYF SM 
Sbjct: 494 WNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMH 553

Query: 442 NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLG 501
           N Y VNP++E Y  ++DLL RAG+  EA E+++SMPF+P   +W  LL  C+ H   +LG
Sbjct: 554 NVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLG 613

Query: 502 KLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDK 561
             AA R+ +LKP   GTY++LSN+YA  G+W + AK RK+MR  G KKE G SWIEV +K
Sbjct: 614 IEAAERLFELKPQHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVENK 673

Query: 562 VCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           V  F+  D      + +Y  LE L+  M +  Y PD  C++HD+E +
Sbjct: 674 VHSFLVGDANHPEVRQIYNYLEQLVLEMRKIGYVPDTKCVLHDVESD 720



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 141/339 (41%), Gaps = 82/339 (24%)

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
           S  + +HA +I  GF     ++N ++D+Y +   L+ A   FDE+ + D++   T+IA Y
Sbjct: 30  SLARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAY 89

Query: 291 EKSGS----------------------------------SECLNMFSKMKSERFSPNCFT 316
             +G                                      + +F  M+ + F P+ +T
Sbjct: 90  SAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYT 149

Query: 317 FTSIIAACATLAALS--CGQQVHAGIVRRGLDGNLALANALIDMYAKCGN---------I 365
           FTS++ A A +A     C QQ+H  +V+ G     ++ NALI  Y KC           +
Sbjct: 150 FTSVLGALALVAEKEKHC-QQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLM 208

Query: 366 SDSQKIFSEMSDRDLVTWTS-------------------------------MMIGYGAHG 394
           ++++K+F EM +RD ++WT+                               M+ GY   G
Sbjct: 209 AEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRG 268

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIY- 453
              EA E+F +M+ S ++ D   F +V++ C++AG    G +          NP  ++  
Sbjct: 269 LYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAM 328

Query: 454 ---GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
                ++    + G+V  A E+   MP + D   W  +L
Sbjct: 329 PVNNALITFYWKCGKVDIAQEIFNKMP-ERDLVSWNIIL 366



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 72/147 (48%), Gaps = 4/147 (2%)

Query: 317 FTSIIAACATLAALS--CGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSE 374
           + S++  C   + +S    + VHA ++  G      + N LID+Y+K   ++ ++ +F E
Sbjct: 14  YGSLLQICCLQSPISYSLARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDE 73

Query: 375 MSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434
           +   D+V  T+++  Y A G  K + ++F +    G+R D + + A++TA SH       
Sbjct: 74  IPQPDIVARTTLIAAYSAAGDLKLSRKIFSD-TPLGMR-DSVFYNAMITAYSHNHDGHAA 131

Query: 435 LKYFKSMNDYNVNPNKEIYGCVVDLLG 461
           ++ F  M   N  P+   +  V+  L 
Sbjct: 132 IELFCDMQRDNFRPDNYTFTSVLGALA 158


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/582 (35%), Positives = 339/582 (58%), Gaps = 11/582 (1%)

Query: 29  VKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYT 88
           V K+ I SD  +I +G       L+  Y +   I+ A  +F      +VV W VM+  + 
Sbjct: 340 VIKAGISSD--MIVEGA------LLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFG 391

Query: 89  SFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIY 148
             +  ++++ +F +M    + PN FT  S+L+ C  + +L     +H   IK G + ++Y
Sbjct: 392 KLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVY 451

Query: 149 VENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE 208
           V + L+D+YA     +D A ++   +   + VSWT LI+GYA        L  FKEML  
Sbjct: 452 VCSVLIDMYAKHG-KLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNR 510

Query: 209 GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDA 268
           G++ +   FS A+ ACA    ++ G+ IHA     G+  +L + N+++ +Y R   + +A
Sbjct: 511 GIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEA 570

Query: 269 NQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATL 327
              F+++  KD I+WN +I+G+ +SG  E  L +F++M   +   + FTF S ++A A +
Sbjct: 571 YLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANI 630

Query: 328 AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMM 387
           A +  G+Q+HA I++RG D ++ ++NALI  YAKCG+I D+++ F EM +++ V+W +M+
Sbjct: 631 ANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMI 690

Query: 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNV 446
            GY  HG+G EA+ LF++M + G  P+ + F+ VL+ACSH GLV +GL YF+SM+ ++ +
Sbjct: 691 TGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGL 750

Query: 447 NPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAAL 506
            P    Y CVVDL+ RAG +  A + I+ MP +PD ++W  LL AC  H+   +G+ AA 
Sbjct: 751 VPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQ 810

Query: 507 RVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFI 566
            +L+L+P    TY++LSN+YA  GKW+   + R++MR  G KKE G SWIEV++ V  F 
Sbjct: 811 HLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWIEVKNSVHAFY 870

Query: 567 ANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
             D++      +Y  L  L +   E  Y  D   L++D+E E
Sbjct: 871 VGDRLHPLADKIYEFLAELNKKAAEIGYFQDRYSLLNDVEQE 912



 Score =  235 bits (600), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 124/454 (27%), Positives = 239/454 (52%), Gaps = 4/454 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S+L   L+  YF  G ++    +F++MP R V SW  +I+G+      N+   +F  M+ 
Sbjct: 45  SVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIE 104

Query: 106 NEVNPNAFTLSSVLKACKGMK-SLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
             V+P   + +SVL+AC G +  +  A  +H   I  GL  S  + N L+ +YA   + +
Sbjct: 105 ENVSPTEISFASVLRACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLII 164

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
            +AR VF+++  K+ VSW  +I+G++ +G     + +F EM   G+   PY FS  +  C
Sbjct: 165 -SARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGC 223

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
                   G+ +HA V K+G      V N+++ +Y R      A + F +M  KD +++N
Sbjct: 224 TKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFN 283

Query: 285 TIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           ++I+G  + G S+  L +F+KMK +   P+C T  S+++ACA+  AL  G+Q+H+ +++ 
Sbjct: 284 SLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKA 343

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G+  ++ +  AL+D+Y  C +I  + ++F      ++V W  M++ +G   +  E+  +F
Sbjct: 344 GISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIF 403

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
            +M   G+ P++  + ++L  C+  G +D G +    +       N  +   ++D+  + 
Sbjct: 404 RQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKH 463

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
           G++  A+ +++++  + D   W  L+    +H L
Sbjct: 464 GKLDTAHVILRTLT-EDDVVSWTALISGYAQHNL 496



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 181/357 (50%), Gaps = 3/357 (0%)

Query: 118 VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK 177
           +L  C    SL     +HG  +K G      + N L+DVY      +D    VF DM  +
Sbjct: 16  LLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALG-DLDGVVKVFEDMPNR 74

Query: 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW-VSFGKLI 236
           +  SW  +I+G+         L +F  M+ E V     SF+  +RAC+     + + + I
Sbjct: 75  SVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQI 134

Query: 237 HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-S 295
           HA +I HG   +  + N ++ +Y +   +  A + FD +  KD ++W  +I+G+ ++G  
Sbjct: 135 HARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYE 194

Query: 296 SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
            E +++F +M +    P  + F+S+++ C  +     G+Q+HA + + G      + NAL
Sbjct: 195 EEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNAL 254

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           + +Y++  N   ++K+FS+M  +D V++ S++ G    G    A+ELF +M +  ++PD 
Sbjct: 255 VTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDC 314

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
           +   ++L+AC+  G + +G +    +    ++ +  + G ++DL      +K A+E+
Sbjct: 315 VTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEM 371



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 161/320 (50%), Gaps = 5/320 (1%)

Query: 208 EGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSD 267
            G+  N  ++   +  C ++G +   K +H  ++K GFG+   + N ++D+Y     L  
Sbjct: 4   RGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDG 63

Query: 268 ANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACA- 325
             + F++M  + + +W+ II+G+ EK  S+  L++FS M  E  SP   +F S++ AC+ 
Sbjct: 64  VVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSG 123

Query: 326 TLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTS 385
               +   +Q+HA I+  GL  +  ++N LI +YAK G I  ++K+F  +  +D V+W +
Sbjct: 124 HRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVA 183

Query: 386 MMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYN 445
           M+ G+  +G+ +EAI LF EM  +G+ P   VF +VL+ C+   L D G +    +  Y 
Sbjct: 184 MISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYG 243

Query: 446 VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKL 503
            +    +   +V L  R      A ++   M  K DE  +  L+    +    +  L   
Sbjct: 244 SSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSK-DEVSFNSLISGLAQQGFSDGALELF 302

Query: 504 AALRVLDLKPNMMGTYIILS 523
             ++   LKP+ +    +LS
Sbjct: 303 TKMKRDYLKPDCVTVASLLS 322



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 60/122 (49%)

Query: 305 MKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGN 364
           M+      NC T+  ++  C    +L   +++H  I++ G      L N L+D+Y   G+
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60

Query: 365 ISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTA 424
           +    K+F +M +R + +W  ++ G+         ++LF  M++  V P  I F +VL A
Sbjct: 61  LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRA 120

Query: 425 CS 426
           CS
Sbjct: 121 CS 122


>gi|125534384|gb|EAY80932.1| hypothetical protein OsI_36110 [Oryza sativa Indica Group]
          Length = 770

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/580 (36%), Positives = 335/580 (57%), Gaps = 23/580 (3%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            +AT+L+ +Y   G   +AR LFD MPER+VV+WT ++ GYT  +       VFVEM+  
Sbjct: 114 FVATSLVNAYMRCGAARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEM 173

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
              P+ +TL + L AC     +     VHG AIK G E    + NSL  +YA    S+D+
Sbjct: 174 GRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLG-SLDS 232

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYG-GLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           A   F  +  KN ++WTT+I+  A        GL +F +ML++GV  N ++ +  +  C 
Sbjct: 233 ALRAFWRIPEKNVITWTTMISACAEDEECVELGLSLFIDMLMDGVMPNEFTLTSVMSLCG 292

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           +   ++ GK + A   K G  +NLPV NS + +Y R     +A + F++M +  +ITWN 
Sbjct: 293 TRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNA 352

Query: 286 IIAGYE------------KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG 333
           +I+GY             +S   + L +F  +K     P+ FTF+SI++ C+ + AL  G
Sbjct: 353 MISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQG 412

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
           +Q+HA  ++ G   ++ + +AL++MY KCG I D+ K F EM  R  VTWTSM+ GY  H
Sbjct: 413 EQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQH 472

Query: 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEI 452
           G  +EAI+LF+EM  +GVRP+ I F+++L+ACS+AGLV+E   YF  M  +Y + P  + 
Sbjct: 473 GQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDH 532

Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLK 512
           YGC++D+  R GRV++A+  IK   F+P+E++W  L+  C+ H    L   AA ++L+LK
Sbjct: 533 YGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELK 592

Query: 513 PNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGM----SWIEVRDKVCGFIAN 568
           P  + TYI+L N+Y +  +W++ A+ RK+M+    +++VG+    SWI ++DKV  F AN
Sbjct: 593 PKGIETYILLLNMYISTERWQDVARVRKLMK----QEDVGILRDRSWITIKDKVYFFRAN 648

Query: 569 DKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           D+       +Y +LE L+       YEP  +  + D E +
Sbjct: 649 DRTHPQATELYQLLENLLEKAKAIGYEPYQNAELSDSEDD 688



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 130/277 (46%), Gaps = 8/277 (2%)

Query: 205 MLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264
           ML EG  +    +   +  C   G +   + +H  + K G G+++ V  S+++ Y R   
Sbjct: 69  MLTEGKAVQSAMYVPLLHRCVEMGSLGAARAVHGHMAKTGAGADMFVATSLVNAYMRCGA 128

Query: 265 LSDANQYFDEMTEKDLITWNTIIAGYE-KSGSSECLNMFSKMKSERFSPNCFTFTSIIAA 323
             DA + FD M E++++TW  ++ GY   S  +  L +F +M      P+ +T  + + A
Sbjct: 129 ARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNA 188

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTW 383
           C     +  G+QVH   ++ G +   ++ N+L  +YAK G++  + + F  + +++++TW
Sbjct: 189 CLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITW 248

Query: 384 TSMMIGYGAHGHGKEAIE----LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439
           T+M+    A    +E +E    LF +M+  GV P+     +V++ C     ++ G +   
Sbjct: 249 TTMI---SACAEDEECVELGLSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQA 305

Query: 440 SMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
                    N  +    + L  R G   EA  L + M
Sbjct: 306 FSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQM 342



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 83/178 (46%), Gaps = 1/178 (0%)

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           +  ++  C  + +L   + VH  + + G   ++ +A +L++ Y +CG   D++++F  M 
Sbjct: 81  YVPLLHRCVEMGSLGAARAVHGHMAKTGAGADMFVATSLVNAYMRCGAARDARRLFDGMP 140

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
           +R++VTWT+++ GY  +      +E+F EM++ G  P      A L AC  +  VD G +
Sbjct: 141 ERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQ 200

Query: 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKE 494
                  Y       +   +  L  + G +  A      +P K +   W  ++ AC E
Sbjct: 201 VHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEK-NVITWTTMISACAE 257


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/560 (36%), Positives = 331/560 (59%), Gaps = 3/560 (0%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108
           A  L+  Y   G I  A  +F ++PE DVVSW   I+G         A  + ++M  + +
Sbjct: 240 ANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGL 299

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
            PN FTLSS+LKAC G  + +    +HG  +K   +   Y+   L+D+YA   + +D+A+
Sbjct: 300 VPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGL-LDDAK 358

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            VF+ +  ++ V W  LI+G +H       L +F  M  EG ++N  + +  +++ AS  
Sbjct: 359 KVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLE 418

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            +S  + +HA   K GF S+  V+N ++D Y + DCL+ A + F++    D+I + ++I 
Sbjct: 419 AISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMIT 478

Query: 289 GYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
              +    E  + +F +M  +   P+ F  +S++ ACA+L+A   G+QVHA +++R    
Sbjct: 479 ALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMS 538

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           ++   NAL+  YAKCG+I D+   FS + ++ +V+W++M+ G   HGHGK A+++F  MV
Sbjct: 539 DVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMV 598

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRV 466
              + P+ I   +VL AC+HAGLVDE  +YF SM + + +   +E Y C++DLLGRAG++
Sbjct: 599 DEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYACMIDLLGRAGKL 658

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            +A EL+ SMPF+ + +VWG LL A + HR P LG+LAA ++  L+P   GT+++L+N Y
Sbjct: 659 DDAMELVNSMPFQTNAAVWGALLAASRVHRDPELGRLAAEKLFILEPEKSGTHVLLANTY 718

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           A+ G W++ AK RK+M+    KKE  MSW+E++DKV  FI  DK     + +Y  L+ L 
Sbjct: 719 ASAGMWDDVAKVRKLMKDSKVKKEPAMSWVELKDKVHTFIVGDKSHPRARDIYAKLDELG 778

Query: 587 RHMNETAYEPDIDCLIHDLE 606
             M +  Y P+++  +HD++
Sbjct: 779 DLMTKAGYVPNVEVDLHDVD 798



 Score =  224 bits (572), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 141/484 (29%), Positives = 245/484 (50%), Gaps = 11/484 (2%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMP-ERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           G   +A  L+  Y   G ++EAR +FDE   ER+ VSW  +++ Y   +  + A  VF E
Sbjct: 133 GDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGE 192

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           MV   V PN F  S V+ AC G + L     VH M I+ G +  ++  N+L+D+Y+    
Sbjct: 193 MVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLG- 251

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            +  A +VF  +   + VSW   I+G    G+    L +  +M   G+  N ++ S  ++
Sbjct: 252 DIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILK 311

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           ACA +G  + G+ IH  ++K    S+  +   ++DMY +   L DA + FD + ++DL+ 
Sbjct: 312 ACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVL 371

Query: 283 WNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           WN +I+G       +E L++F +M+ E F  N  T  +++ + A+L A+S  +QVHA   
Sbjct: 372 WNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAE 431

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           + G   +  + N LID Y KC  ++ + ++F +    D++ +TSM+       HG++AI+
Sbjct: 432 KLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIK 491

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461
           LF EM++ G+ PD  V  ++L AC+     ++G +    +       +      +V    
Sbjct: 492 LFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYA 551

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           + G +++A      +P K   S W  ++G   +H     GK    R LD+   M+  +I 
Sbjct: 552 KCGSIEDADLAFSGLPEKGVVS-WSAMIGGLAQH---GHGK----RALDVFHRMVDEHIS 603

Query: 522 LSNI 525
            ++I
Sbjct: 604 PNHI 607



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 122/383 (31%), Positives = 197/383 (51%), Gaps = 6/383 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           ++   +L+  Y    L   AR +FDE+P+   VSW+ ++  Y++      A   F  M  
Sbjct: 37  AVFRNHLLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRS 96

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             V  N F L  VLK             +H +A+  GL G I+V N+L+ +Y      +D
Sbjct: 97  CSVRCNEFVLPVVLKCA---PDAGFGTQLHALAMATGLGGDIFVANALVAMYGGFGF-VD 152

Query: 166 NARLVFNDMKW-KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
            AR+VF++    +N VSW  L++ Y  +      + VF EM+  GV+ N + FS  V AC
Sbjct: 153 EARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNAC 212

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
             +  +  G+ +HA VI+ G+  ++   N+++DMY +   +  A   F ++ E D+++WN
Sbjct: 213 TGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWN 272

Query: 285 TIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
             I+G    G  +  L +  +MKS    PN FT +SI+ ACA   A + G+Q+H  +V+ 
Sbjct: 273 AFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKA 332

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
             D +  +A  L+DMYAK G + D++K+F  +  RDLV W +++ G        EA+ LF
Sbjct: 333 NADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLF 392

Query: 404 DEMVKSGVRPDRIVFMAVLTACS 426
             M K G   +R    AVL + +
Sbjct: 393 CRMRKEGFDVNRTTLAAVLKSTA 415



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 109/381 (28%), Positives = 197/381 (51%), Gaps = 9/381 (2%)

Query: 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFND 173
           T+  +L      +SL   A +H   +K GL       N L+  Y+ C +   +AR VF++
Sbjct: 6   TIGPLLTRYAATQSLLQGAHIHAHLLKSGLFAVF--RNHLLSFYSKCRLP-GSARRVFDE 62

Query: 174 MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG 233
           +     VSW++L+T Y+++      LG F+ M    V  N +   + ++     G   FG
Sbjct: 63  IPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPDAG---FG 119

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLITWNTIIAGYEK 292
             +HA  +  G G ++ V N+++ MY  F  + +A   FDE   E++ ++WN +++ Y K
Sbjct: 120 TQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVK 179

Query: 293 SGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLAL 351
           +   S  + +F +M      PN F F+ ++ AC     L  G++VHA ++R G D ++  
Sbjct: 180 NDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFT 239

Query: 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411
           ANAL+DMY+K G+I  +  +F ++ + D+V+W + + G   HGH + A+EL  +M  SG+
Sbjct: 240 ANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGL 299

Query: 412 RPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471
            P+     ++L AC+ +G  + G +    M   N + +  I   +VD+  + G + +A +
Sbjct: 300 VPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKK 359

Query: 472 LIKSMPFKPDESVWGPLLGAC 492
           +   +P + D  +W  L+  C
Sbjct: 360 VFDWIP-QRDLVLWNALISGC 379



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 117/419 (27%), Positives = 206/419 (49%), Gaps = 39/419 (9%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A  L+  Y   GL+++A+ +FD +P+RD+V W  +I+G +    H +A ++F  M +  
Sbjct: 340 IAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEG 399

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDN 166
            + N  TL++VLK+   ++++S+   VH +A K G     +V N L+D Y  C C++   
Sbjct: 400 FDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNY-- 457

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  VF      + +++T++IT  +   +G   + +F EML +G++ +P+  S  + ACAS
Sbjct: 458 AYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACAS 517

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
                 GK +HA +IK  F S++   N+++  Y +   + DA+  F  + EK +++W+ +
Sbjct: 518 LSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAM 577

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-- 343
           I G  + G  +  L++F +M  E  SPN  T TS++ AC            HAG+V    
Sbjct: 578 IGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACN-----------HAGLVDEAK 626

Query: 344 ----------GLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGA 392
                     G++        +ID+  + G + D+ ++ + M    +   W +++     
Sbjct: 627 RYFNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAASRV 686

Query: 393 HGH---GKEAIE--LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV 446
           H     G+ A E     E  KSG      V +A   A   AG+ D+  K  K M D  V
Sbjct: 687 HRDPELGRLAAEKLFILEPEKSGTH----VLLANTYAS--AGMWDDVAKVRKLMKDSKV 739


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/568 (36%), Positives = 328/568 (57%), Gaps = 7/568 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           SI +T L   YF      +AR +FD MP RD V+W  ++AGY      + A    V M  
Sbjct: 51  SIASTALANMYFKCRRPADARRVFDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQG 110

Query: 106 NE--VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
            E    P++ TL SVL AC   ++L     VH  A++ GL+  + V  +++D Y  C  +
Sbjct: 111 EEGGERPDSVTLVSVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCG-A 169

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           ++ AR VF+ M  +N VSW  +I GYA +GN    + +F  M+ EGV++   S   A++A
Sbjct: 170 VEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQA 229

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLIT 282
           C   G++   + +H  +++ G  SN+ V N+++  Y +      A Q F+E+  +K  I+
Sbjct: 230 CGELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRIS 289

Query: 283 WNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           WN +I G+ ++   E    +F++M+ E   P+ FT  S+I A A ++     + +H   +
Sbjct: 290 WNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSI 349

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           R  LD ++ +  ALIDMY+KCG +S ++++F    DR ++TW +M+ GYG+HG G+ A+E
Sbjct: 350 RHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVE 409

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLL 460
           LF+EM  +G  P+   F++VL ACSHAGLVDEG KYF SM  DY + P  E YG +VDLL
Sbjct: 410 LFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLL 469

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520
           GRAG++ EA+  IK+MP +P  SV+G +LGACK H+   L + +A  + +L P     ++
Sbjct: 470 GRAGKLDEAWSFIKNMPIEPGISVYGAMLGACKLHKNVELAEESAQIIFELGPEEGVYHV 529

Query: 521 ILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYG 580
           +L+NIYA    W++ A+ R  M   G +K  G S I+++++V  F +      H + +Y 
Sbjct: 530 LLANIYANASMWKDVARVRTAMEKKGLQKTPGWSIIQLKNEVHTFYSGSTNHQHAKDIYA 589

Query: 581 VLEMLIRHMNETAYEPDIDCLIHDLEGE 608
            L  LI  + +  Y PD D  IHD+E +
Sbjct: 590 RLAKLIEEIKDMGYVPDTDS-IHDVEDD 616



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 182/374 (48%), Gaps = 13/374 (3%)

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P   T +++LK C     L+    VH      GL        +L ++Y  C    D AR 
Sbjct: 14  PVLRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPAD-ARR 72

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI--AVRACAST 227
           VF+ M  ++ V+W  ++ GYA +G     +     M  E     P S ++   + ACA  
Sbjct: 73  VFDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADA 132

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +   + +HA  ++ G    + V  ++LD YC+   +  A   FD M  ++ ++WN +I
Sbjct: 133 RALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMI 192

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            GY  +G ++E + +F +M  E       +  + + AC  L  L   ++VH  +VR GL 
Sbjct: 193 DGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLS 252

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDL-VTWTSMMIGYGAHGHGKEAIELFDE 405
            N+++ NALI  YAKC     + ++F+E+ ++   ++W +M++G+  +   ++A  LF  
Sbjct: 253 SNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFAR 312

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP--NKEIY--GCVVDLLG 461
           M    VRPD    ++V+ A +    + + L+  + ++ Y++    ++++Y    ++D+  
Sbjct: 313 MQLENVRPDSFTLVSVIPAVAD---ISDPLQA-RWIHGYSIRHQLDQDVYVLTALIDMYS 368

Query: 462 RAGRVKEAYELIKS 475
           + GRV  A  L  S
Sbjct: 369 KCGRVSIARRLFDS 382



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 152/304 (50%), Gaps = 5/304 (1%)

Query: 216 SFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM 275
           +F+  ++ CA+   ++ G+ +HA +   G  S      ++ +MY +    +DA + FD M
Sbjct: 18  TFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRM 77

Query: 276 TEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFS--PNCFTFTSIIAACATLAALSC 332
             +D + WN ++AGY ++G  S  +    +M+ E     P+  T  S++ ACA   AL  
Sbjct: 78  PSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHA 137

Query: 333 GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA 392
            ++VHA  +R GLD  + ++ A++D Y KCG +  ++ +F  M  R+ V+W +M+ GY  
Sbjct: 138 CREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYAD 197

Query: 393 HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEI 452
           +G+  EA+ LF  MV+ GV       +A L AC   G +DE  +  + +    ++ N  +
Sbjct: 198 NGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVSV 257

Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGK--LAALRVLD 510
              ++    +  R   A ++   +  K     W  ++    ++  P   +   A +++ +
Sbjct: 258 TNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLEN 317

Query: 511 LKPN 514
           ++P+
Sbjct: 318 VRPD 321


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/554 (36%), Positives = 338/554 (61%), Gaps = 13/554 (2%)

Query: 67  TLFDEMPER-DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGM 125
           TLF++  ++ +V SW  +IA         +A   F  M +  + PN  T    +K+C  +
Sbjct: 106 TLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSAL 165

Query: 126 KSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTL 185
             L +    H  A+  G E  ++V ++L+D+Y+ C   + +AR +F+++  +N VSWT++
Sbjct: 166 LDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCG-ELRDARTLFDEISHRNIVSWTSM 224

Query: 186 ITGYAHSGNGYGGLGVFKEMLLE--GVE------MNPYSFSIAVRACASTGWVSFGKLIH 237
           ITGY  + + +  L +FKE L+E  G E      ++P +    + AC+     S  + +H
Sbjct: 225 ITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVH 284

Query: 238 AAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SS 296
             +IK GF  +L V N+++D Y +   L  + + FD M E+D+I+WN+IIA Y ++G S+
Sbjct: 285 GFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMST 344

Query: 297 ECLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
           E + +F +M K    + N  T ++++ ACA   +   G+ +H  +++ GL+ N+ +  ++
Sbjct: 345 ESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSI 404

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           IDMY KCG +  ++K F  M ++++ +W++M+ GYG HGH KEA+E+F EM  +GV+P+ 
Sbjct: 405 IDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNY 464

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
           I F++VL ACSHAGL++EG  +FK+M ++++V P  E YGC+VDLLGRAG +KEA++LIK
Sbjct: 465 ITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIK 524

Query: 475 SMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEE 534
            M  +PD  VWG LLGAC+ H+  +LG+++A ++ +L P   G Y++LSNIYA  G+WE+
Sbjct: 525 GMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWED 584

Query: 535 FAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAY 594
             + R +M+  G  K  G S ++++ +V  F+  D+     + +Y  LE L   + E  Y
Sbjct: 585 VERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGY 644

Query: 595 EPDIDCLIHDLEGE 608
            PD+  ++HD+  E
Sbjct: 645 VPDMTSVLHDVGHE 658



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 137/430 (31%), Positives = 213/430 (49%), Gaps = 47/430 (10%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV-- 104
            +++ L+  Y   G + +ARTLFDE+  R++VSWT MI GY   +  ++A  +F E +  
Sbjct: 188 FVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVE 247

Query: 105 ------RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA 158
                   EV  +   + SVL AC  +   S    VHG  IK G EG + VEN+LMD YA
Sbjct: 248 ESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYA 307

Query: 159 TCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG-VEMNPYSF 217
            C   +  +R VF+ M  ++ +SW ++I  YA +G     + +F  M+ +G +  N  + 
Sbjct: 308 KCG-ELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTL 366

Query: 218 SIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE 277
           S  + ACA +G    GK IH  VIK G  SN+ V  SI+DMYC+   +  A + FD M E
Sbjct: 367 SAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMRE 426

Query: 278 KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQV 336
           K++ +W+ ++AGY   G + E L +F +M      PN  TF S++AAC+           
Sbjct: 427 KNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACS----------- 475

Query: 337 HAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHG 396
           HAG++  G     A+++          ++    + +  M D             G  G+ 
Sbjct: 476 HAGLLEEGWHWFKAMSHEF--------DVEPGVEHYGCMVDL-----------LGRAGYL 516

Query: 397 KEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP-NKEIYGC 455
           KEA +L   M    +RPD +V+ A+L AC     VD G    + +  + ++P N   Y  
Sbjct: 517 KEAFDLIKGM---KLRPDFVVWGALLGACRMHKNVDLGEISARKL--FELDPKNCGYYVL 571

Query: 456 VVDLLGRAGR 465
           + ++   AGR
Sbjct: 572 LSNIYADAGR 581


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/599 (34%), Positives = 333/599 (55%), Gaps = 33/599 (5%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P+  S     ++ +Y   G +   + +F  MP RD VSW  +I+GY  +    +A   +
Sbjct: 66  MPQPNSFSWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTY 125

Query: 101 VEMVRNEV-NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
             M+++ V N N  T S++L        +     +HG  +K G    ++V +SL+D+YA 
Sbjct: 126 NSMMKDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAK 185

Query: 160 CCIS------------------------------MDNARLVFNDMKWKNDVSWTTLITGY 189
             +                               + +++ +F+ MK ++ +SWTT+ITG 
Sbjct: 186 MGLVSVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGL 245

Query: 190 AHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNL 249
             +G     + +F++M  EG+ M+ Y+F   + AC     +  GK IH  +I+ G+  N+
Sbjct: 246 IQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNV 305

Query: 250 PVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSE 308
            V ++++DMYC+   +  A   F  M  K++++W  ++ GY ++G S E + +F  M+  
Sbjct: 306 FVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRN 365

Query: 309 RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDS 368
              P+ FT  S+I++CA LA+L  G Q H   +  GL   + ++NALI +Y KCG+I DS
Sbjct: 366 GIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDS 425

Query: 369 QKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHA 428
            ++F EMS RD V+WT+++ GY   G   E I+LF+ M+  G++PD + F+AVL+ACS A
Sbjct: 426 NQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRA 485

Query: 429 GLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGP 487
           GLV+ G +YF+SM  D+ + P  + Y C++DL GRAGR++EA   I  MPF PD   W  
Sbjct: 486 GLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWAT 545

Query: 488 LLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547
           LL +C+ +    +GK AA  +L+L P     YI+LS+IYAA+GKW   A+ R+ MR  G+
Sbjct: 546 LLSSCRLYGNEEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGA 605

Query: 548 KKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
           +KE G SWI+ + KV  F A+D+    +  +Y  LE L   M E  Y PD   ++HD+E
Sbjct: 606 RKEPGFSWIKYKSKVYIFSADDQSSPFSDQIYAELEKLNHKMIEEGYVPDASSVLHDVE 664



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 121/470 (25%), Positives = 235/470 (50%), Gaps = 68/470 (14%)

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179
           K C   ++ + A  +H + IK       ++ N+L++ Y+    ++  AR VF+ M   N 
Sbjct: 13  KLCCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLG-NITYARHVFDKMPQPNS 71

Query: 180 VSWTTLITGYAHSGN------------------------GYGGLG-------VFKEMLLE 208
            SW T+++ Y+ SG+                        GY   G        +  M+ +
Sbjct: 72  FSWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKD 131

Query: 209 GV-EMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSD 267
           GV  +N  +FS  +   +S G V  G+ IH  ++K GFG+ + V +S++DMY +   +S 
Sbjct: 132 GVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSV 191

Query: 268 ANQYFDEMTEKDLITWNTIIAGYEKSG--------------------------------S 295
           A+Q FDE+ E++++ +NT+I G  +SG                                 
Sbjct: 192 ASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLE 251

Query: 296 SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
           +E +++F  M+ E  + + +TF S++ AC  L AL  G+++H  I+R G + N+ + +AL
Sbjct: 252 AEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSAL 311

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           +DMY KC ++  ++ +F  M+++++V+WT+M++GYG +G  +EA+ +F +M ++G+ PD 
Sbjct: 312 VDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDD 371

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKS 475
               +V+++C++   ++EG ++        +     +   ++ L G+ G ++++ +L   
Sbjct: 372 FTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDE 431

Query: 476 MPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNMMGTYIILS 523
           M F+ DE  W  L+    +    N  +     + V  LKP+ +    +LS
Sbjct: 432 MSFR-DEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLS 480


>gi|413920851|gb|AFW60783.1| hypothetical protein ZEAMMB73_487264 [Zea mays]
          Length = 770

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/576 (36%), Positives = 336/576 (58%), Gaps = 15/576 (2%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            +AT+L+ +Y   G  ++AR+LFD+MPE++VV+WT +I GYT  +   +A  VFVEM+  
Sbjct: 114 FVATSLVNAYMRCGASQDARSLFDQMPEKNVVTWTALITGYTVNSQLLEALEVFVEMLEA 173

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
              P+ +TL ++L AC    +    + VHG  IK        + NSL  +YA    S+++
Sbjct: 174 GRYPSHYTLGAMLNACSASNNADLGSQVHGYTIKYRALSITSIGNSLCRMYAKSG-SLES 232

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYG-GLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           A   F  +  KN ++WTT+I+  A   N    GL +F +ML++GV  N ++ +  +  C 
Sbjct: 233 AMRAFRMVPDKNVITWTTMISACAEDENYTELGLTLFLDMLMDGVLPNEFTLTSVMSLCG 292

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           +   ++ GK + A   K G  +N+PV NS + +Y R     +A ++F+EM +  +ITWN 
Sbjct: 293 TRLDLNLGKQVQAFCFKIGCQTNIPVKNSTMYLYLRKGETDEAMRFFEEMDDVSIITWNA 352

Query: 286 IIAGYE------------KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG 333
           +I+GY             +S   + L +F  +K     P+ FTF+SI++ C+++ AL  G
Sbjct: 353 MISGYAQIMETAKDDLHARSRGFQALKVFRNLKRSAMKPDLFTFSSILSVCSSMMALEQG 412

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
           +Q+HA  ++ G   ++ + +AL++MY KCG I D+ K F EMS R LVTWTSM+ GY  H
Sbjct: 413 EQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEDATKAFVEMSIRTLVTWTSMISGYSQH 472

Query: 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEI 452
           G  +EAI+LF++M  +GVRP+ I F+ VL+ACS+AGL ++   YF  M  +Y + P  + 
Sbjct: 473 GRPQEAIQLFEDMRFAGVRPNEITFVCVLSACSYAGLAEKAEHYFDMMKEEYKIEPIVDH 532

Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLK 512
           YGC+VD+  R GR+ +A+  I+   F+P+E++W  L+  C+ H    L   AA R+++L+
Sbjct: 533 YGCMVDMFVRLGRLDDAFAFIRRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLIELR 592

Query: 513 PNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMG 572
           P  + TY++L N+Y +  +W + A+ RK+M+  G    +  SWI ++DKV  F ANDK  
Sbjct: 593 PKGIETYVLLLNMYISNERWHDVARVRKLMKQEGLGVLMDRSWITIKDKVYFFKANDKTH 652

Query: 573 SHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
             +  +Y +LE L+       YEP     + D E +
Sbjct: 653 ELSDELYQLLENLLEKAKTIGYEPYQSAELSDSEDD 688



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 145/335 (43%), Gaps = 47/335 (14%)

Query: 205 MLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264
           ML EG  +    +   +  C  TG +   + +H  ++K G  +++ V  S+++ Y R   
Sbjct: 69  MLREGKTVQSAMYVPLLHVCVETGSLGGARALHGHMVKTGTSADMFVATSLVNAYMRCGA 128

Query: 265 LSDANQYFDEMTEKDLITWNTIIAGYE-KSGSSECLNMFSKMKSERFSPNCFTFTSIIAA 323
             DA   FD+M EK+++TW  +I GY   S   E L +F +M      P+ +T  +++ A
Sbjct: 129 SQDARSLFDQMPEKNVVTWTALITGYTVNSQLLEALEVFVEMLEAGRYPSHYTLGAMLNA 188

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTW 383
           C+       G QVH   ++       ++ N+L  MYAK G++  + + F  + D++++TW
Sbjct: 189 CSASNNADLGSQVHGYTIKYRALSITSIGNSLCRMYAKSGSLESAMRAFRMVPDKNVITW 248

Query: 384 TSMMIGYGAHGHGKE-AIELFDEMVKSGVRPDRIVFMAVLTACS---------------- 426
           T+M+       +  E  + LF +M+  GV P+     +V++ C                 
Sbjct: 249 TTMISACAEDENYTELGLTLFLDMLMDGVLPNEFTLTSVMSLCGTRLDLNLGKQVQAFCF 308

Query: 427 -------------------HAGLVDEGLKYFKSMNDYNV---NPNKEIYGCVV-----DL 459
                                G  DE +++F+ M+D ++   N     Y  ++     DL
Sbjct: 309 KIGCQTNIPVKNSTMYLYLRKGETDEAMRFFEEMDDVSIITWNAMISGYAQIMETAKDDL 368

Query: 460 LGRAG--RVKEAYELIKSMPFKPDESVWGPLLGAC 492
             R+   +  + +  +K    KPD   +  +L  C
Sbjct: 369 HARSRGFQALKVFRNLKRSAMKPDLFTFSSILSVC 403



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 99/197 (50%), Gaps = 7/197 (3%)

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           +  ++  C    +L   + +H  +V+ G   ++ +A +L++ Y +CG   D++ +F +M 
Sbjct: 81  YVPLLHVCVETGSLGGARALHGHMVKTGTSADMFVATSLVNAYMRCGASQDARSLFDQMP 140

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
           ++++VTWT+++ GY  +    EA+E+F EM+++G  P      A+L ACS +   D G +
Sbjct: 141 EKNVVTWTALITGYTVNSQLLEALEVFVEMLEAGRYPSHYTLGAMLNACSASNNADLGSQ 200

Query: 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESV--WGPLLGACKE 494
                  Y       I   +  +  ++G ++ A   +++    PD++V  W  ++ AC E
Sbjct: 201 VHGYTIKYRALSITSIGNSLCRMYAKSGSLESA---MRAFRMVPDKNVITWTTMISACAE 257

Query: 495 HRLPNLGKLAALRVLDL 511
               N  +L     LD+
Sbjct: 258 DE--NYTELGLTLFLDM 272


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/565 (35%), Positives = 316/565 (55%), Gaps = 3/565 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + +   LI  Y   G + +AR +FD M  RD VSWT +   Y       ++   +  M++
Sbjct: 164 TTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQ 223

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             V P+  T  +VL AC  + +L     +H   ++      + V  +L  +Y  C  +  
Sbjct: 224 ERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCG-AFK 282

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +AR VF  + +++ ++W T+I G+  SG      G F  ML EGV  +  +++  + ACA
Sbjct: 283 DAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACA 342

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
             G ++ GK IHA   K G  S++   N++++MY +   + DA Q FD M ++D+++W T
Sbjct: 343 RPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTT 402

Query: 286 IIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           ++  Y       E    F +M  +    N  T+  ++ AC+   AL  G+++HA +V+ G
Sbjct: 403 LLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAG 462

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           L  +LA+ NAL+ MY KCG++ D+ ++F  MS RD+VTW +++ G G +G G EA++ ++
Sbjct: 463 LLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYE 522

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRA 463
            M   G+RP+   F+ VL+AC    LV+EG + F  M+ DY + P ++ Y C+VD+L RA
Sbjct: 523 VMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARA 582

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G ++EA ++I ++P KP  ++WG LL AC+ H    +G+ AA   L L+P   G Y+ LS
Sbjct: 583 GHLREAEDVILTIPLKPSAAMWGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLS 642

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
            IYAA G W + AK RK M+  G KKE G SWIE+  +V  F+A D+    TQ +Y  LE
Sbjct: 643 AIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIEIAGEVHSFVARDQSHPRTQEIYAELE 702

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGE 608
            L + M    Y PD   ++HDL+ E
Sbjct: 703 TLKKQMKSLGYVPDTRFVMHDLDDE 727



 Score =  262 bits (670), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 164/500 (32%), Positives = 261/500 (52%), Gaps = 49/500 (9%)

Query: 45  PSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           P++  TN L+K Y   G + EAR LFD+   + VVSW VMI+GY       +A+ +F  M
Sbjct: 61  PNVYITNTLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLM 120

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
            +  + P+ FT  S+L AC     L+    +H   ++ GL     V N+L+ +YA C  S
Sbjct: 121 QQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCG-S 179

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           + +AR VF+ M  +++VSWTTL   YA SG G   L  +  ML E V  +  ++   + A
Sbjct: 180 VRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSA 239

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C S   +  GK IHA +++  + S++ V  ++  MY +     DA + F+ ++ +D+I W
Sbjct: 240 CGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAW 299

Query: 284 NTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           NT+I G+  SG   E    F +M  E  +P+  T+T++++ACA    L+ G+++HA   +
Sbjct: 300 NTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAK 359

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            GL  ++   NALI+MY+K G++ D++++F  M  RD+V+WT+++  Y       E+   
Sbjct: 360 DGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTT 419

Query: 403 FDEMVKSGVRPDRIVFMAVLTACS-----------HAGLVDEGL------------KYFK 439
           F +M++ GV+ ++I +M VL ACS           HA +V  GL             YFK
Sbjct: 420 FKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFK 479

Query: 440 --------------SMNDYNVNPNKEIYGCVVDLLGRAGRVKEA---YELIKSMPFKPDE 482
                         SM D  V  N  I G     LG+ GR  EA   YE++KS   +P+ 
Sbjct: 480 CGSVEDAIRVFEGMSMRDV-VTWNTLIGG-----LGQNGRGLEALQRYEVMKSEGMRPNA 533

Query: 483 SVWGPLLGACKEHRLPNLGK 502
           + +  +L AC+   L   G+
Sbjct: 534 ATFVNVLSACRVCNLVEEGR 553



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 117/381 (30%), Positives = 210/381 (55%), Gaps = 3/381 (0%)

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           +++    +L++C   K L+    VH   ++ G++ ++Y+ N+L+ +YA C  S++ AR +
Sbjct: 27  DSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCG-SVNEARQL 85

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F+    K+ VSW  +I+GYAH G       +F  M  E +E + ++F   + AC+S   +
Sbjct: 86  FDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVL 145

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
           ++G+ IH  V++ G  ++  V N+++ MY +   + DA + FD M  +D ++W T+   Y
Sbjct: 146 NWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAY 205

Query: 291 EKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
            +SG   E L  +  M  ER  P+  T+ ++++AC +LAAL  G+Q+HA IV      ++
Sbjct: 206 AESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDV 265

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
            ++ AL  MY KCG   D++++F  +S RD++ W +M+ G+   G  +EA   F  M++ 
Sbjct: 266 RVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEE 325

Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
           GV PDR  +  VL+AC+  G +  G +         +  +      ++++  +AG +K+A
Sbjct: 326 GVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDA 385

Query: 470 YELIKSMPFKPDESVWGPLLG 490
            ++   MP K D   W  LLG
Sbjct: 386 RQVFDRMP-KRDVVSWTTLLG 405



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 172/295 (58%), Gaps = 2/295 (0%)

Query: 196 YGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSI 255
           Y    V + +  +G +++ Y +   +++C     ++ GK +H  +++ G   N+ + N++
Sbjct: 10  YAPADVLQYLHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTL 69

Query: 256 LDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNC 314
           L +Y     +++A Q FD+ + K +++WN +I+GY   G + E  N+F+ M+ ER  P+ 
Sbjct: 70  LKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDK 129

Query: 315 FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSE 374
           FTF SI++AC++ A L+ G+++H  ++  GL  +  + NALI MYAKCG++ D++++F  
Sbjct: 130 FTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDA 189

Query: 375 MSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434
           M+ RD V+WT++   Y   G+G+E+++ +  M++  VRP RI +M VL+AC     +++G
Sbjct: 190 MASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKG 249

Query: 435 LKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
            +    + +   + +  +   +  +  + G  K+A E+ + + ++ D   W  ++
Sbjct: 250 KQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYR-DVIAWNTMI 303



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 79/194 (40%), Gaps = 32/194 (16%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +PK   +  T L+  Y D   + E+ T F                               
Sbjct: 392 MPKRDVVSWTTLLGRYADCDQVVESFTTFK------------------------------ 421

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
            +M++  V  N  T   VLKAC    +L     +H   +K GL   + V N+LM +Y  C
Sbjct: 422 -QMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKC 480

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
             S+++A  VF  M  ++ V+W TLI G   +G G   L  ++ M  EG+  N  +F   
Sbjct: 481 G-SVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNV 539

Query: 221 VRACASTGWVSFGK 234
           + AC     V  G+
Sbjct: 540 LSACRVCNLVEEGR 553


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/560 (35%), Positives = 332/560 (59%), Gaps = 30/560 (5%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108
           A  L+  Y   G + +A ++F+++ + D+VSW  +IAG      H QA  +  +M R   
Sbjct: 296 ANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQ-- 353

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
                                    +H   +K  +E  ++V   L+D+Y+ C + +++AR
Sbjct: 354 -------------------------LHSSLMKMDMESDLFVSVGLVDMYSKCDL-LEDAR 387

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
           + FN +  K+ ++W  +I+GY+        L +F EM  EG+  N  + S  +++ A   
Sbjct: 388 MAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQ 447

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            V   + +H   +K GF S++ V+NS++D Y +   + DA + F+E T  DL+++ ++I 
Sbjct: 448 VVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMIT 507

Query: 289 GYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
            Y + G   E L +F +M+     P+ F  +S++ ACA L+A   G+Q+H  I++ G   
Sbjct: 508 AYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVL 567

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           ++   N+L++MYAKCG+I D+ + FSE+++R +V+W++M+ G   HGHG++A++LF++M+
Sbjct: 568 DIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQML 627

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRV 466
           K GV P+ I  ++VL AC+HAGLV E   YF+SM + +   P +E Y C++DLLGRAG++
Sbjct: 628 KEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKI 687

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            EA EL+  MPF+ + SVWG LLGA + H+   LG+ AA  +  L+P   GT+++L+NIY
Sbjct: 688 NEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIY 747

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           A+ GKWE  A+ R++MR    KKE GMSWIEV+DKV  F+  D+    +Q +Y  L+ L 
Sbjct: 748 ASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELS 807

Query: 587 RHMNETAYEPDIDCLIHDLE 606
             M++  Y P ++  +HD+E
Sbjct: 808 DLMDKAGYVPMVEIDLHDVE 827



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 148/516 (28%), Positives = 242/516 (46%), Gaps = 71/516 (13%)

Query: 29  VKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYT 88
           + KS +  DP +          +LI  Y        AR L DE  E D+VSW+ +I+GY 
Sbjct: 82  ITKSGLSDDPSI--------RNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYA 133

Query: 89  SFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIY 148
                  A   F EM    V  N FT SSVLKAC  +K L     VHG+ +  G EG ++
Sbjct: 134 QNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVF 193

Query: 149 VENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE 208
           V N+L+ +YA C   +D+ RL F+++  +N VSW  L + Y         +G+F EM+L 
Sbjct: 194 VANTLVVMYAKCDEFLDSKRL-FDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLS 252

Query: 209 GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDA 268
           G++ N +S S  V AC      S GK+IH  +IK G+  +    N+++DMY +   L+DA
Sbjct: 253 GIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADA 312

Query: 269 NQYFDEMTEKDLITWNTIIAG-YEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATL 327
              F+++ + D+++WN +IAG        + L +  +MK                     
Sbjct: 313 ISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMK--------------------- 351

Query: 328 AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMM 387
                 +Q+H+ +++  ++ +L ++  L+DMY+KC  + D++  F+ + ++DL+ W +++
Sbjct: 352 ------RQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAII 405

Query: 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD-----EGLKYFKSMN 442
            GY  +    EA+ LF EM K G+  ++     +L + +   +V       GL      +
Sbjct: 406 SGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFH 465

Query: 443 D--YNVNPNKEIYG--------------CVV-DLL---------GRAGRVKEAYEL---I 473
              Y VN   + YG              C + DL+          + G+ +EA +L   +
Sbjct: 466 SDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEM 525

Query: 474 KSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVL 509
           + M  KPD  V   LL AC        GK   + +L
Sbjct: 526 QDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHIL 561



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 177/328 (53%), Gaps = 2/328 (0%)

Query: 83  MIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG 142
           +I     F+   Q   +   + +    P + + S +L  C   KSL     +H    K G
Sbjct: 27  LIQTVPQFSEDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSG 86

Query: 143 LEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVF 202
           L     + N L+++Y+ C      AR + ++    + VSW+ LI+GYA +G G G L  F
Sbjct: 87  LSDDPSIRNHLINLYSKC-RXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAF 145

Query: 203 KEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRF 262
            EM L GV+ N ++FS  ++AC+    +  GK +H  V+  GF  ++ V N+++ MY + 
Sbjct: 146 HEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKC 205

Query: 263 DCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSII 321
           D   D+ + FDE+ E+++++WN + + Y +     E + +F +M      PN F+ +S++
Sbjct: 206 DEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMV 265

Query: 322 AACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLV 381
            AC  L   S G+ +H  +++ G D +   ANAL+DMYAK G+++D+  +F ++   D+V
Sbjct: 266 NACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIV 325

Query: 382 TWTSMMIGYGAHGHGKEAIELFDEMVKS 409
           +W +++ G   H H ++A+EL  +M + 
Sbjct: 326 SWNAVIAGCVLHEHHEQALELLGQMKRQ 353



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 108/376 (28%), Positives = 197/376 (52%), Gaps = 33/376 (8%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            ++  L+  Y    L+E+AR  F+ +PE+D+++W  +I+GY+ +    +A ++FVEM + 
Sbjct: 368 FVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKE 427

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            +  N  TLS++LK+  G++ +     VHG+++K G    IYV NSL+D Y  C   +++
Sbjct: 428 GIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCS-HVED 486

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSF--SIAVRAC 224
           A  +F +    + VS+T++IT YA  G G   L +F EM  + +E+ P  F  S  + AC
Sbjct: 487 AERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEM--QDMELKPDRFVCSSLLNAC 544

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           A+      GK +H  ++K+GF  ++   NS+++MY +   + DA + F E+TE+ +++W+
Sbjct: 545 ANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWS 604

Query: 285 TIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +I G  + G   + L +F++M  E  SPN  T  S++ AC            HAG+V  
Sbjct: 605 AMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACN-----------HAGLVTE 653

Query: 344 ------------GLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGY 390
                       G          +ID+  + G I+++ ++ ++M  + +   W +++   
Sbjct: 654 AKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAA 713

Query: 391 GAHGH---GKEAIELF 403
             H     G+ A E+ 
Sbjct: 714 RIHKDVELGRRAAEML 729



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 150/286 (52%), Gaps = 10/286 (3%)

Query: 216 SFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM 275
           S+S  +  C +T  +  G  IHA + K G   +  + N ++++Y +      A +  DE 
Sbjct: 58  SYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDES 117

Query: 276 TEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334
           +E DL++W+ +I+GY ++G     L  F +M       N FTF+S++ AC+ +  L  G+
Sbjct: 118 SEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGK 177

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
           QVH  +V  G +G++ +AN L+ MYAKC    DS+++F E+ +R++V+W ++   Y    
Sbjct: 178 QVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXD 237

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG----LKYFKSMNDYNVNPNK 450
              EA+ LF EMV SG++P+     +++ AC+  GL D      +  +     Y+ +P  
Sbjct: 238 FCGEAVGLFYEMVLSGIKPNEFSLSSMVNACT--GLRDSSRGKIIHGYLIKLGYDWDPFS 295

Query: 451 EIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR 496
                +VD+  + G + +A  + + +  +PD   W  ++  C  H 
Sbjct: 296 A--NALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIAGCVLHE 338


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 216/622 (34%), Positives = 335/622 (53%), Gaps = 50/622 (8%)

Query: 34  IQSDPPLIPKGPSI---LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSF 90
            Q    L+  G  +   L + L++ Y   G +E+AR +FD+M ER+V SWT ++  Y   
Sbjct: 30  FQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGL 89

Query: 91  NCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVE 150
             + +   +F  MV   V P+ F    V KAC  +K+      V+   +  G EG+  V+
Sbjct: 90  GDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVK 149

Query: 151 NSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGV 210
            S++D++  C   MD AR  F ++++K+   W  +++GY   G     L VF++M+LEGV
Sbjct: 150 GSILDMFIKCG-RMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGV 208

Query: 211 EMNPYSFSIAVRACASTGWVSFGKLIHAAVIK-HGFGSNLPVMNSILDMY--CR------ 261
           + N  + + AV AC +   +  G+ IH   IK     S+L V NS++D Y  CR      
Sbjct: 209 KPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVAR 268

Query: 262 -----------------------------------FDCLSDANQYFDEMTEKDLITWNTI 286
                                              F  +  A   F E++ +D++ WN+I
Sbjct: 269 RKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSI 328

Query: 287 IAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+   +SG S   L++  +M       N  T  S + AC+ LAAL  G+++H  I+R GL
Sbjct: 329 ISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGL 388

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           D    + N+LIDMY +CG+I  S++IF  M  RDLV+W  M+  YG HG G +A+ LF +
Sbjct: 389 DTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQ 448

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAG 464
               G++P+ I F  +L+ACSH+GL++EG KYFK M  +Y ++P  E Y C+VDLL RAG
Sbjct: 449 FRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAG 508

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           +  E  E I+ MPF+P+ +VWG LLGAC+ H  P+L + AA  + +L+P   G Y++++N
Sbjct: 509 QFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMAN 568

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           IY+A G+WE+ AK R +M+  G  K  G SWIEV+ K+  F+  D      + +   +E 
Sbjct: 569 IYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMES 628

Query: 585 LIRHMNETAYEPDIDCLIHDLE 606
           L   + E  Y PD + ++ D++
Sbjct: 629 LYFDIKEIGYVPDTNFVLQDVD 650



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 129/479 (26%), Positives = 232/479 (48%), Gaps = 58/479 (12%)

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA-TCCISMDNARLVFNDM 174
           +S+L+ C+ + +L     VH   +  G++   ++ + L++VY  T C+  ++AR +F+ M
Sbjct: 14  ASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCV--EDARRMFDKM 71

Query: 175 KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGK 234
             +N  SWT ++  Y   G+    + +F  M+ EGV  + + F    +AC+       GK
Sbjct: 72  SERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGK 131

Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG 294
            ++  ++  GF  N  V  SILDM+ +   +  A ++F+E+  KD+  WN +++GY   G
Sbjct: 132 DVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKG 191

Query: 295 S-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR-RGLDGNLALA 352
              + LN+F KM  E   PN  T  S ++AC  L+ L  G+++H   ++   LD +L + 
Sbjct: 192 EFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVG 251

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMM--IGYGAHGHGKEAIELFDEM-VKS 409
           N+L+D YAKC ++  +++ F  +   DLV+W +M+   G+  +G GK A+E F  M +  
Sbjct: 252 NSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIAC 311

Query: 410 GV-----RPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN--------------- 449
            V       D +V+ ++++AC+ +G     L   + MN  NV  N               
Sbjct: 312 SVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLA 371

Query: 450 -----KEIY---------------GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
                KEI+                 ++D+ GR G ++++  +   MP + D   W  ++
Sbjct: 372 ALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMP-QRDLVSWNVMI 430

Query: 490 GACKEH--RLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA---EGKWEEFAKFRKIMR 543
                H   +  +      R + LKPN    +I  +N+ +A    G  EE  K+ K+M+
Sbjct: 431 SVYGMHGFGMDAVNLFQQFRTMGLKPN----HITFTNLLSACSHSGLIEEGWKYFKMMK 485



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 121/219 (55%), Gaps = 1/219 (0%)

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
           ++  ++ C     +  G  +HA ++ +G      + + +L++YC+  C+ DA + FD+M+
Sbjct: 13  YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMS 72

Query: 277 EKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ 335
           E+++ +W  I+  Y   G   E + +F  M +E   P+ F F  +  AC+ L     G+ 
Sbjct: 73  ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKD 132

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
           V+  ++  G +GN  +  +++DM+ KCG +  +++ F E+  +D+  W  M+ GY + G 
Sbjct: 133 VYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGE 192

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434
            K+A+ +F +MV  GV+P+ I   + ++AC++  L+  G
Sbjct: 193 FKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHG 231



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 91/173 (52%), Gaps = 1/173 (0%)

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           + SI+  C  L  L  G QVHA +V  G+D    L + L+++Y + G + D++++F +MS
Sbjct: 13  YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMS 72

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
           +R++ +WT++M  Y   G  +E I+LF  MV  GVRPD  VF  V  ACS       G  
Sbjct: 73  ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKD 132

Query: 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
            +  M       N  + G ++D+  + GR+  A    + + FK D  +W  ++
Sbjct: 133 VYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK-DVFMWNIMV 184


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 232/682 (34%), Positives = 365/682 (53%), Gaps = 84/682 (12%)

Query: 5   RLLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPP----LIPKGP-SILATNLIKSYFDE 59
           RLL+ +A  H    PP    +L+ +   ++  D P    L    P  + AT+L+ +Y   
Sbjct: 46  RLLT-SALLHA---PPHPHLTLRLIHLYTLSRDLPAAATLFCADPCPVSATSLVAAYAAA 101

Query: 60  GLIEEARTLFDEMP--ERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN-EVNPNAFTLS 116
             +  A + FD +P   RD V    +I+ Y   +    A  VF  ++ +  + P+ ++ +
Sbjct: 102 DRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFT 161

Query: 117 SVLKACKGMKSLS--NAALVHGMAIKEGLEGSIYVENSLMDVYATC--CISMDNARLVFN 172
           ++L A   + ++S  + A +H   +K G  G++ V N+L+ +Y  C    +  +AR V +
Sbjct: 162 ALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPEATRDARKVLD 221

Query: 173 DMKWKNDVSWTTL-------------------------------ITGYAHSGNGYGGLGV 201
           +M  K+D++WTT+                               I+GY HSG       +
Sbjct: 222 EMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFEL 281

Query: 202 FKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFG----SNLPVMNSILD 257
           F+ M+LE V ++ ++F+  + ACA+ G  + GK +H  +I+        + LPV N+++ 
Sbjct: 282 FRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVT 341

Query: 258 MYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG----------------------- 294
            Y +   ++ A + FD MT KD+++WNTI++GY +S                        
Sbjct: 342 FYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVM 401

Query: 295 ---------SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
                    + + L +F+KM+SE   P  +T+   IAAC  L AL  G+Q+H  IV+ G 
Sbjct: 402 VSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGF 461

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           +G+ +  NALI MYA+CG + ++  +F  M + D V+W +M+   G HGHG+EA+ELFD 
Sbjct: 462 EGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDR 521

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAG 464
           MV  G+ PDRI F+ VLTAC+H+GLVDEG +YF+SM  D+ + P ++ Y  ++DLLGRAG
Sbjct: 522 MVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAG 581

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           R+ EA +LIK+MPF+P  S+W  +L  C+      LG  AA ++  + P   GTYI+LSN
Sbjct: 582 RIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSN 641

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
            Y+A G W + A+ RK+MR  G KKE G SWIE  +KV  F+  D        VY  LEM
Sbjct: 642 TYSAAGCWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFLVGDTKHPEAHEVYKFLEM 701

Query: 585 LIRHMNETAYEPDIDCLIHDLE 606
           +   M +  Y PD   ++HD+E
Sbjct: 702 VGAKMRKLGYVPDTKVVLHDME 723


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/553 (37%), Positives = 319/553 (57%), Gaps = 4/553 (0%)

Query: 48   LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
            +  +LI +YF  G ++ A  LFDE+ +RDVVSW  MI+G       + A   FV+M+   
Sbjct: 590  VVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILR 649

Query: 108  VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
            V  +  TL + + AC  + SLS    +HG  +K      +   N+L+D+Y+ C  ++++A
Sbjct: 650  VGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCG-NLNDA 708

Query: 168  RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
               F  M  K  VSWT+LI  Y   G     + +F EM  +GV  + YS +  + ACA  
Sbjct: 709  IQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACG 768

Query: 228  GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
              +  G+ +H  + K+     LPV N+++DMY +   + +A   F ++  KD+++WNT+I
Sbjct: 769  NSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMI 828

Query: 288  AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
             GY K+   +E L +F++M+ E   P+  T   ++ AC +LAAL  G+ +H  I+R G  
Sbjct: 829  GGYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAALEIGRGIHGCILRNGYS 887

Query: 347  GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
              L +ANALIDMY KCG++  ++ +F  + ++DL+TWT M+ G G HG G EAI  F +M
Sbjct: 888  SELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKM 947

Query: 407  VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGR 465
              +G++PD I F ++L ACSH+GL++EG  +F SM ++ N+ P  E Y C+VDLL R G 
Sbjct: 948  RIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGN 1007

Query: 466  VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
            + +AY LI++MP KPD ++WG LL  C+ H    L +  A  V +L+P+  G Y++L+NI
Sbjct: 1008 LSKAYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANI 1067

Query: 526  YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
            YA   KWEE  K R+ +   G KK  G SWIEV+ K   F++ D      + ++ +L  L
Sbjct: 1068 YAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQGKFTTFVSADTAHPQAKSIFSLLNNL 1127

Query: 586  IRHMNETAYEPDI 598
               M    + P +
Sbjct: 1128 RIKMKNEGHSPKM 1140



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 133/472 (28%), Positives = 246/472 (52%), Gaps = 7/472 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDE-MPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           +L   L+  Y   G + E R +FD  + +  V  W +M++ Y     + ++  +F +M +
Sbjct: 487 VLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQK 546

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             +  N++T S +LK    +  +     +HG   K G      V NSL+  Y      +D
Sbjct: 547 LGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSG-EVD 605

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +A  +F+++  ++ VSW ++I+G   +G  +  L  F +ML+  V ++  +   +V ACA
Sbjct: 606 SAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACA 665

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           + G +S G+ +H   +K  F   +   N++LDMY +   L+DA Q F++M +K +++W +
Sbjct: 666 NVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTS 725

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +IA Y + G   + + +F +M+S+  SP+ ++ TS++ ACA   +L  G+ VH  I +  
Sbjct: 726 LIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNN 785

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           +   L ++NAL+DMYAKCG++ ++  +FS++  +D+V+W +M+ GY  +    EA++LF 
Sbjct: 786 MALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFA 845

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
           EM K   RPD I    +L AC     ++ G      +     +    +   ++D+  + G
Sbjct: 846 EMQKES-RPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCG 904

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPN 514
            +  A  L   +P K D   W  ++  C  H L N  +     +R+  +KP+
Sbjct: 905 SLVHARLLFDMIPEK-DLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPD 955



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 123/405 (30%), Positives = 214/405 (52%), Gaps = 10/405 (2%)

Query: 101 VEMVR----NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDV 156
           VE++R    +E++ NA+  SS+L+ C   K L    +VH +    G+     +   L+ +
Sbjct: 438 VELLRMSQKSELDLNAY--SSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFM 495

Query: 157 YATCCISMDNARLVFNDMKWKNDVS-WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPY 215
           Y +C  ++   R +F+ +   N V  W  +++ YA  G+    + +FK+M   G+  N Y
Sbjct: 496 YVSCG-ALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSY 554

Query: 216 SFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM 275
           +FS  ++  A+ G V   K IH  V K GFGS   V+NS++  Y +   +  A++ FDE+
Sbjct: 555 TFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDEL 614

Query: 276 TEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334
            ++D+++WN++I+G   +G S   L  F +M   R   +  T  + +AACA + +LS G+
Sbjct: 615 GDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGR 674

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
            +H   V+      +   N L+DMY+KCGN++D+ + F +M  + +V+WTS++  Y   G
Sbjct: 675 ALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREG 734

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG 454
              +AI LF EM   GV PD     +VL AC+    +D+G      +   N+     +  
Sbjct: 735 LYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSN 794

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN 499
            ++D+  + G ++EAY +   +P K D   W  ++G   ++ LPN
Sbjct: 795 ALMDMYAKCGSMEEAYLVFSQIPVK-DIVSWNTMIGGYSKNSLPN 838


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/629 (34%), Positives = 349/629 (55%), Gaps = 65/629 (10%)

Query: 43  KGPSI-LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFV 101
           + P I L  NL+ +Y     I  AR +FD+MP+R++ SW  +++ Y+   C  +   VF 
Sbjct: 40  RNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSYSKLACLPEMERVFH 99

Query: 102 EM-VRNEVNPNA---------FTLSSV----LKACKGMKSLSNAAL-------------- 133
            M  R+ V+ N+         F L SV    L    G  +L+  AL              
Sbjct: 100 AMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVH 159

Query: 134 ----VHGMAIKEGLEGSIYVENSLMDVYATC----------------------------- 160
               VHG  +K G +  ++V + L+D+Y+                               
Sbjct: 160 LGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLM 219

Query: 161 -CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
            C  ++++R +F DM+ K+ +SWT +I G+  +G     + +F+EM LE +EM+ Y+F  
Sbjct: 220 RCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGS 279

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
            + AC     +  GK +HA +I+  +  N+ V ++++DMYC+   +  A   F +M  K+
Sbjct: 280 VLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKN 339

Query: 280 LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           +++W  ++ GY ++G S E + +F  M++    P+ FT  S+I++CA LA+L  G Q H 
Sbjct: 340 VVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHC 399

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
             +  GL   + ++NAL+ +Y KCG+I DS ++FSEMS  D V+WT+++ GY   G   E
Sbjct: 400 RALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANE 459

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVV 457
            + LF+ M+  G +PD++ F+ VL+ACS AGLV +G + F+SM  ++ + P ++ Y C++
Sbjct: 460 TLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMI 519

Query: 458 DLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG 517
           DL  RAGR++EA + I  MPF PD   W  LL +C+ HR   +GK AA  +L L+P+   
Sbjct: 520 DLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLEPHNTA 579

Query: 518 TYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQY 577
           +YI+LS+IYAA+GKWEE A  RK MR  G +KE G SWI+ +++V  F A+D+    +  
Sbjct: 580 SYILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWIKYKNQVHIFSADDQSNPFSDQ 639

Query: 578 VYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
           +Y  LE L   M +  Y PD++ ++HD++
Sbjct: 640 IYSELEKLNYKMVQEGYVPDMNSVLHDVD 668



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 184/350 (52%), Gaps = 4/350 (1%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P+   ++   LI        IE++R LF +M E+D +SWT MIAG+T      +A  +F
Sbjct: 203 MPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLF 262

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
            EM    +  + +T  SVL AC G+ +L     VH   I+   + +I+V ++L+D+Y   
Sbjct: 263 REMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCK- 321

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
           C S+ +A  VF  M  KN VSWT ++ GY  +G     + +F +M   G+E + ++    
Sbjct: 322 CKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSV 381

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           + +CA+   +  G   H   +  G  S + V N+++ +Y +   + D+++ F EM+  D 
Sbjct: 382 ISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDE 441

Query: 281 ITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           ++W  +++GY + G ++E L +F  M +  F P+  TF  +++AC+    +  G Q+   
Sbjct: 442 VSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFES 501

Query: 340 IVRRGLDGNLA-LANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMM 387
           +++      +      +ID++++ G + +++K  ++M    D + W S++
Sbjct: 502 MIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLL 551



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 137/321 (42%), Gaps = 64/321 (19%)

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
           K IH  +IK      + ++N+++  Y +FD ++ A + FD+M +++L +WNT+++ Y K 
Sbjct: 29  KKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSYSKL 88

Query: 294 GS-SECLNMFSKMKSER--------------------------------FSPNCFTFTSI 320
               E   +F  M +                                  F+ N    +++
Sbjct: 89  ACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTM 148

Query: 321 IAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK------------------- 361
           +   +    +  G QVH  +V+ G    + + + L+DMY+K                   
Sbjct: 149 LILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNV 208

Query: 362 ------------CGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
                       C  I DS+++F +M ++D ++WT+M+ G+  +G  +EAI+LF EM   
Sbjct: 209 VMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLE 268

Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
            +  D+  F +VLTAC     + EG +    +   +   N  +   +VD+  +   +K A
Sbjct: 269 NLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSA 328

Query: 470 YELIKSMPFKPDESVWGPLLG 490
             + + M  K   S    L+G
Sbjct: 329 ETVFRKMNCKNVVSWTAMLVG 349



 Score = 46.6 bits (109), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 38/188 (20%), Positives = 74/188 (39%), Gaps = 32/188 (17%)

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD------ 377
           C  L      +++H  I++   +  + L N L+  YAK   I+ ++++F +M        
Sbjct: 19  CELLKHCRDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSW 78

Query: 378 -------------------------RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG-V 411
                                    RD+V+W S++  Y   G   ++++ ++ M+ +G  
Sbjct: 79  NTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPF 138

Query: 412 RPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471
             +RI    +L   S  G V  GL+    +  +       +   +VD+  + G V  A +
Sbjct: 139 NLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQ 198

Query: 472 LIKSMPFK 479
               MP K
Sbjct: 199 AFDEMPEK 206


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/563 (36%), Positives = 329/563 (58%), Gaps = 3/563 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A+ L+  Y     +  AR +FD+MP+RD V W  MI G     C++ +  VF +MV   
Sbjct: 140 VASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQG 199

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V  ++ T+++VL A   M+ +     +  +A+K G     YV   L+ V++ C   +D A
Sbjct: 200 VRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKC-EDVDTA 258

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           RL+F  ++  + VS+  LI+G++ +G     +  F+E+L+ G  ++  +    +   +  
Sbjct: 259 RLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPF 318

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
           G +     I    +K G      V  ++  +Y R + +  A Q FDE +EK +  WN +I
Sbjct: 319 GHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMI 378

Query: 288 AGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           +GY +SG +E  +++F +M +  F+PN  T TSI++ACA L ALS G+ VH  I  + L+
Sbjct: 379 SGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKNLE 438

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            N+ ++ ALIDMYAKCGNIS++ ++F   S+++ VTW +M+ GYG HG+G EA++LF+EM
Sbjct: 439 QNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEM 498

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGR 465
           +  G +P  + F++VL ACSHAGLV EG + F +M N Y + P  E Y C+VD+LGRAG+
Sbjct: 499 LHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQ 558

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           +++A E I+ MP +P  +VWG LLGAC  H+  NL ++A+ R+ +L P  +G Y++LSNI
Sbjct: 559 LEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLARVASERLFELDPGNVGYYVLLSNI 618

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           Y+ E  + + A  R+ ++     K  G + IEV      F+  D+  S T  +Y  LE L
Sbjct: 619 YSVERNFPKAASVREAVKKRNLSKTPGCTLIEVNGTPHVFVCGDRSHSQTTSIYAKLEEL 678

Query: 586 IRHMNETAYEPDIDCLIHDLEGE 608
              M E  Y+ +    +HD+E E
Sbjct: 679 TGKMREMGYQSETVTALHDVEEE 701



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 158/315 (50%), Gaps = 18/315 (5%)

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIY----VENSLMDVYA 158
           M+R +++ N   L+ + KAC    +  + A  H   I+ G +  +     +   L DV A
Sbjct: 1   MIRGDISRNTL-LALISKAC----TFPHLAETHAQLIRNGYQHDLATVTKLTQKLFDVGA 55

Query: 159 TCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFS 218
           T      +AR +F  +   +   +  LI G++ S +       F   LL+   ++P +F+
Sbjct: 56  T-----RHARALFFSVPKPDIFLFNVLIKGFSFSPDASSI--SFYTHLLKNTTLSPDNFT 108

Query: 219 IAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK 278
            A    AS    + G  +HA  +  GF SNL V ++++D+YC+F  ++ A + FD+M ++
Sbjct: 109 YAFAISASPDD-NLGMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDR 167

Query: 279 DLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
           D + WNT+I G  ++    + + +F  M ++    +  T  +++ A A +  +  G  + 
Sbjct: 168 DTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQ 227

Query: 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
              ++ G   +  +   LI +++KC ++  ++ +F  +   DLV++ +++ G+  +G  +
Sbjct: 228 CLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETE 287

Query: 398 EAIELFDEMVKSGVR 412
            A++ F E++ SG R
Sbjct: 288 CAVKYFRELLVSGQR 302



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 101/200 (50%), Gaps = 4/200 (2%)

Query: 237 HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS 296
           HA +I++G+  +L  +  +            A   F  + + D+  +N +I G+  S  +
Sbjct: 28  HAQLIRNGYQHDLATVTKLTQKLFDVGATRHARALFFSVPKPDIFLFNVLIKGFSFSPDA 87

Query: 297 ECLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
             ++ ++ + K+   SP+ FT+   I+A       + G  +HA  V  G D NL +A+AL
Sbjct: 88  SSISFYTHLLKNTTLSPDNFTYAFAISASPDD---NLGMCLHAHAVVDGFDSNLFVASAL 144

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           +D+Y K   ++ ++K+F +M DRD V W +M+ G   +    +++++F +MV  GVR D 
Sbjct: 145 VDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDS 204

Query: 416 IVFMAVLTACSHAGLVDEGL 435
                VL A +    V  G+
Sbjct: 205 TTVATVLPAVAEMQEVKVGM 224


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 216/588 (36%), Positives = 335/588 (56%), Gaps = 37/588 (6%)

Query: 56  YFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTL 115
           Y    L+ ++  LF+ +     ++W  +I  YTS    +Q+   F+ M+ + + P+    
Sbjct: 50  YSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVF 109

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA----------------- 158
            SVLK+C  +  L+    +HG  I+ GL+  +Y  N+LM++Y+                 
Sbjct: 110 PSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGE 169

Query: 159 --------------TCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKE 204
                            +S D+ R +F  M  K+ VSW T+I G A +G     L + +E
Sbjct: 170 VFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIRE 229

Query: 205 MLLEGVEMNPYSFSIA--VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRF 262
           M   G  + P SF+++  +   A    +S GK IH   I+ G  +++ V +S++DMY + 
Sbjct: 230 M--GGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKC 287

Query: 263 DCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSII 321
             ++D+ + F  +TE+D I+WN+IIAG  ++G   E L  F +M   +  P  ++F+SI+
Sbjct: 288 TRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIM 347

Query: 322 AACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLV 381
            ACA L  L  G+Q+H  I R G D N+ +A++L+DMYAKCGNI  +++IF  M  RD+V
Sbjct: 348 PACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMV 407

Query: 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441
           +WT+M++G   HG   +AIELF++M   G++P+ + FMAVLTACSH GLVDE  KYF SM
Sbjct: 408 SWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSM 467

Query: 442 N-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNL 500
             D+ + P  E Y  V DLLGRAGR++EAY+ I  M   P  S+W  LL AC+ H   ++
Sbjct: 468 TRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDM 527

Query: 501 GKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRD 560
            +  A R+L++ PN  G YI+L+NIY+A  +W+E AK+R  MR +G +K    SWIEV++
Sbjct: 528 AEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKN 587

Query: 561 KVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           KV  F+A D+     + +   +E+L+  M +  Y PD   + HD+E E
Sbjct: 588 KVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEE 635



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 115/444 (25%), Positives = 220/444 (49%), Gaps = 38/444 (8%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM 174
           + ++L+    +KS S A  +H   +K     S+   + L+ +Y+   +  D+ RL FN +
Sbjct: 9   VKALLRNPLSIKSRSQAQQLHAQVLKFQ-ASSLCNLSLLLSIYSHINLLHDSLRL-FNTI 66

Query: 175 KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGK 234
            +   ++W ++I  Y   G  +  LG F  ML  G+  +   F   +++CA    ++ G+
Sbjct: 67  HFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGE 126

Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSD-------ANQYFDEMT----------- 276
            +H  +I+ G   +L   N++++MY +   L +       A + FDEMT           
Sbjct: 127 SLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSV 186

Query: 277 --------------EKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSII 321
                         EKDL++WNTIIAG  ++G   E L M  +M      P+ FT +S++
Sbjct: 187 LSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVL 246

Query: 322 AACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLV 381
              A    +S G+++H   +R+GLD ++ +A++LIDMYAKC  ++DS ++F+ +++RD +
Sbjct: 247 PLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGI 306

Query: 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441
           +W S++ G   +G   E +  F +M+ + ++P    F +++ AC+H   +  G +    +
Sbjct: 307 SWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYI 366

Query: 442 NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH-RLPNL 500
                + N  I   +VD+  + G ++ A ++   M  + D   W  ++  C  H + P+ 
Sbjct: 367 TRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLR-DMVSWTAMIMGCALHGQAPDA 425

Query: 501 GKL-AALRVLDLKPNMMGTYIILS 523
            +L   +    +KPN +    +L+
Sbjct: 426 IELFEQMETEGIKPNHVAFMAVLT 449



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 102/183 (55%), Gaps = 1/183 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A++LI  Y     + ++  +F  + ERD +SW  +IAG       ++    F +M+  +
Sbjct: 276 VASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAK 335

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + P +++ SS++ AC  + +L     +HG   + G + +I++ +SL+D+YA C  ++  A
Sbjct: 336 IKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCG-NIRTA 394

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           + +F+ M+ ++ VSWT +I G A  G     + +F++M  EG++ N  +F   + AC+  
Sbjct: 395 KQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHG 454

Query: 228 GWV 230
           G V
Sbjct: 455 GLV 457



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 152/346 (43%), Gaps = 75/346 (21%)

Query: 204 EMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFD 263
           E L++ +  NP   SI  R+ A        + +HA V+K    S+L  ++ +L +Y   +
Sbjct: 6   EALVKALLRNP--LSIKSRSQA--------QQLHAQVLKFQ-ASSLCNLSLLLSIYSHIN 54

Query: 264 CLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIA 322
            L D+ + F+ +     + W ++I  Y   G   + L  F  M +    P+   F S++ 
Sbjct: 55  LLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLK 114

Query: 323 ACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDS-------------- 368
           +CA L  L+ G+ +H  I+R GLD +L   NAL++MY+K   + +S              
Sbjct: 115 SCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEM 174

Query: 369 ------------------QKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
                             +KIF  M ++DLV+W +++ G   +G  +E + +  EM  + 
Sbjct: 175 TERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGAN 234

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC--------------- 455
           ++PD     +VL       L+ E +         +++  KEI+GC               
Sbjct: 235 LKPDSFTLSSVLP------LIAENV---------DISRGKEIHGCSIRQGLDADIYVASS 279

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLG 501
           ++D+  +  RV ++  +  ++  + D   W  ++  C ++ L + G
Sbjct: 280 LIDMYAKCTRVADSCRVF-TLLTERDGISWNSIIAGCVQNGLFDEG 324


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/588 (35%), Positives = 332/588 (56%), Gaps = 41/588 (6%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
            ++I +    G ++E+  LF  MPE+D  SW  MIAG+   +   +A   FV M R++  
Sbjct: 94  NSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFV 153

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
            N ++  S L AC  +K L   A +HG+  K      +++ + L+D Y+ C + +  AR 
Sbjct: 154 LNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGL-VGCARR 212

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           VF+ M+ KN VSW  LIT Y  +G     L  F  M   G + +  + +  V ACA+   
Sbjct: 213 VFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAA 272

Query: 230 VSFGKLIHAAVIKHG-FGSNLPVMNSILDMYCRFDCLSDANQYFDEM------------- 275
              G  IHA V+K   F ++L + N+++DMY +   +++A   FD M             
Sbjct: 273 FKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVS 332

Query: 276 ------------------TEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFT 316
                              +KD+++WN +IAGY ++G +E  L +F  +K E   P  +T
Sbjct: 333 GYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYT 392

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGL------DGNLALANALIDMYAKCGNISDSQK 370
           F +++ A A LA L  G+Q H+ +V+ G       + ++ + N+LIDMY KCG++ +  +
Sbjct: 393 FGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLR 452

Query: 371 IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           +F  M ++D V+W +M+IGY  +G+G EA+ELF +M++SG +PD +  +  L ACSHAGL
Sbjct: 453 VFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGL 512

Query: 431 VDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           V+EG +YF SM  ++ + P K+ Y C+VDLLGRAG ++EA +LI+SMP +PD  VW  LL
Sbjct: 513 VEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLL 572

Query: 490 GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKK 549
            ACK HR   LGK  A ++ ++ P   G Y++L+N+Y+  G+W +    RK+MR  G  K
Sbjct: 573 SACKVHRNITLGKYVAEKIFEIDPTSSGPYVLLANMYSELGRWGDAVSVRKLMRRRGVVK 632

Query: 550 EVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPD 597
           + G SWI+++  V  F+  DK     + +Y +L++L +HM +  Y PD
Sbjct: 633 QPGCSWIDIQSNVHVFMVKDKRHPQKKEIYSILKLLTKHMRQAGYVPD 680



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/450 (26%), Positives = 205/450 (45%), Gaps = 82/450 (18%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFND- 173
            + +L  C  ++S  +A  VHG  I+      ++++N L+DVY  C   +D AR VF+  
Sbjct: 27  FAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGY-LDYARKVFDRM 85

Query: 174 ---------------MKW---------------KNDVSWTTLITGYAHSGNGYGGLGVFK 203
                          M+W               K+  SW ++I G+A        L  F 
Sbjct: 86  SERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFV 145

Query: 204 EMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFD 263
            M  +   +N YSF   + AC+    +  G  IH  + K  +  ++ + + ++D Y +  
Sbjct: 146 RMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCG 205

Query: 264 CLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIA 322
            +  A + FD M EK++++WN +I  YE++G + E L  F +M    F P+  T  S+++
Sbjct: 206 LVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVS 265

Query: 323 ACATLAALSCGQQVHAGIVRRG-LDGNLALANALIDMYAKCGNISDSQKIFSEMSDR--- 378
           ACATLAA   G Q+HA +V+      +L L NAL+DMYAKCG +++++ +F  M  R   
Sbjct: 266 ACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAV 325

Query: 379 ----------------------------DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
                                       D+V+W +++ GY  +G  +EA+ LF  + +  
Sbjct: 326 SETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRES 385

Query: 411 VRPDRIVFMAVLTAC-----------SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL 459
           V P    F  +L A            +H+ +V  G + F+S  +    P+  +   ++D+
Sbjct: 386 VCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFR-FQSGEE----PDIFVGNSLIDM 440

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
             + G V+E   + ++M  K D   W  ++
Sbjct: 441 YMKCGSVEEGLRVFENMVEK-DHVSWNTMI 469



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/387 (26%), Positives = 177/387 (45%), Gaps = 40/387 (10%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + + LI  Y   GL+  AR +FD M E++VVSW  +I  Y       +A   F  M   
Sbjct: 192 FMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTEL 251

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIK-EGLEGSIYVENSLMDVYATC----- 160
              P+  TL+SV+ AC  + +      +H   +K +     + + N+L+D+YA C     
Sbjct: 252 GFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNE 311

Query: 161 --CI-----------------------SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNG 195
             C+                       S+  AR +F  +K K+ VSW  LI GY  +G  
Sbjct: 312 ARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGEN 371

Query: 196 YGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFG------SNL 249
              LG+F+ +  E V    Y+F   + A A+   +  G+  H+ V+KHGF        ++
Sbjct: 372 EEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDI 431

Query: 250 PVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSE 308
            V NS++DMY +   + +  + F+ M EKD ++WNT+I GY ++G   E L +F KM   
Sbjct: 432 FVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLES 491

Query: 309 RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR-RGLDGNLALANALIDMYAKCGNISD 367
              P+  T    + AC+    +  G++    + +  GL         ++D+  + G + +
Sbjct: 492 GEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEE 551

Query: 368 SQKIFSEMSDR-DLVTWTSMMIGYGAH 393
           ++ +   M  + D V W+S++     H
Sbjct: 552 AKDLIESMPKQPDAVVWSSLLSACKVH 578



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 134/260 (51%), Gaps = 15/260 (5%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P   ++  T ++  Y     ++ AR++F  + ++D+VSW  +IAGYT    + +A  +F
Sbjct: 319 MPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLF 378

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLS------NAALVHGMAIKEGLEGSIYVENSLM 154
             + R  V P  +T  ++L A   +  L       +  + HG   + G E  I+V NSL+
Sbjct: 379 RMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLI 438

Query: 155 DVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP 214
           D+Y  C  S++    VF +M  K+ VSW T+I GYA +G G   L +F++ML  G + + 
Sbjct: 439 DMYMKCG-SVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDH 497

Query: 215 YSFSIAVRACASTGWVSFGKLIHAAVIK-HGFGSNLPVMNS---ILDMYCRFDCLSDANQ 270
            +    + AC+  G V  G+    ++ K HG    LPV +    ++D+  R  CL +A  
Sbjct: 498 VTMIGTLCACSHAGLVEEGRRYFFSMTKEHGL---LPVKDHYTCMVDLLGRAGCLEEAKD 554

Query: 271 YFDEMTEK-DLITWNTIIAG 289
             + M ++ D + W+++++ 
Sbjct: 555 LIESMPKQPDAVVWSSLLSA 574



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 88/252 (34%), Gaps = 73/252 (28%)

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
           F  +   F  ++  C  L +    + VH  +++      + + N LID+Y KCG +  ++
Sbjct: 20  FFTDSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYAR 79

Query: 370 KIFSEMSDR-------------------------------DLVTWTSMMIGYGAHGHGKE 398
           K+F  MS+R                               D  +W SM+ G+  H   +E
Sbjct: 80  KVFDRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEE 139

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSH------------------------------- 427
           A++ F  M +     +   F + L+ACS                                
Sbjct: 140 ALDWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLID 199

Query: 428 ----AGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMP---FKP 480
                GLV    + F  M + NV      + C++    + G   EA E    M    FKP
Sbjct: 200 FYSKCGLVGCARRVFDGMEEKNVVS----WNCLITCYEQNGPAIEALEAFGRMTELGFKP 255

Query: 481 DESVWGPLLGAC 492
           DE     ++ AC
Sbjct: 256 DEVTLASVVSAC 267


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/564 (35%), Positives = 327/564 (57%), Gaps = 3/564 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I+  +L+  Y     IE A   F      +VV W VM+  Y      ++++ +F++M   
Sbjct: 350 IIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIE 409

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + PN +T  S+L+ C  + +L     +H   IK G + ++YV + L+D+YA     +D 
Sbjct: 410 GLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHG-ELDT 468

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR +   ++ ++ VSWT +I GY         L +F+EM  +G+  +   FS A+ ACA 
Sbjct: 469 ARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAG 528

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              ++ G+ IHA     G+  +L + N+++ +Y R     DA   F+++  KD I+WN +
Sbjct: 529 IQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNAL 588

Query: 287 IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+G+ +SG   E L +FS+M       N FTF S ++A A  A +  G+Q+HA +++ G 
Sbjct: 589 ISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGY 648

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           D     +N LI +Y+KCG+I D+++ F EM ++++V+W +M+ GY  HG+G EA+ LF+E
Sbjct: 649 DSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEE 708

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAG 464
           M + G+ P+ + F+ VL+ACSH GLV+EGL YF+SM+ ++ + P  E Y CVVDLLGRA 
Sbjct: 709 MKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAA 768

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
            +  A E I+ MP +PD  +W  LL AC  H+   +G+ AA  +L+L+P    TY++LSN
Sbjct: 769 LLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSATYVLLSN 828

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           +YA  GKW+   + R++M+  G KKE G SWIEV++ +  F   D++    + +Y  ++ 
Sbjct: 829 MYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPLAEQIYEYIDD 888

Query: 585 LIRHMNETAYEPDIDCLIHDLEGE 608
           L     E  Y  D   L++D+E E
Sbjct: 889 LNERAGEIGYVQDRYNLLNDVEQE 912



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 127/456 (27%), Positives = 233/456 (51%), Gaps = 4/456 (0%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G  +L + LI  Y   G ++ A  LFD++P  +V  W  +I+G  +    +Q   +F  M
Sbjct: 43  GEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLM 102

Query: 104 VRNEVNPNAFTLSSVLKACKGMKS-LSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           +   V P+  T +SVL+AC G K+       +H   I  G   S  V N L+D+Y+    
Sbjct: 103 ITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNG- 161

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            +D A+LVF  +  K+ VSW  +I+G + +G     + +F +M    V   PY FS  + 
Sbjct: 162 HVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLS 221

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           AC        G+ +H  ++K G  S   V N+++ +Y R+  L  A Q F +M  +D I+
Sbjct: 222 ACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRIS 281

Query: 283 WNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           +N++I+G  + G S   L +F KM+ +   P+C T  S+++ACA++ A   G+Q+H+ ++
Sbjct: 282 YNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVI 341

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           + G+  +L +  +L+D+Y KC +I  + + F      ++V W  M++ YG  G+  E+  
Sbjct: 342 KMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYW 401

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461
           +F +M   G+ P++  + ++L  C+  G +D G +    +       N  +   ++D+  
Sbjct: 402 IFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYA 461

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
           + G +  A  +++ +  + D   W  ++    +H L
Sbjct: 462 KHGELDTARGILQRLR-EEDVVSWTAMIAGYTQHDL 496



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 192/372 (51%), Gaps = 5/372 (1%)

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M    +  N  T   + + C    SL +A  +H    K G +G   + + L+D+Y     
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHG- 59

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            +DNA  +F+D+   N   W  +I+G          LG+F  M+ E V  +  +F+  +R
Sbjct: 60  EVDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLR 119

Query: 223 ACASTGWVSFG--KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           AC S G   F   + IHA +I HGFGS+  V N ++D+Y +   +  A   F+ +  KD 
Sbjct: 120 AC-SGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDS 178

Query: 281 ITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           ++W  +I+G  ++G   E + +F +M      P  + F+S+++AC  +     G+Q+H  
Sbjct: 179 VSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGF 238

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
           IV+ GL     + NAL+ +Y++ GN+  +++IFS+M  RD +++ S++ G    G    A
Sbjct: 239 IVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRA 298

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL 459
           ++LF++M    ++PD +   ++L+AC+  G   +G +    +    ++ +  I G ++DL
Sbjct: 299 LQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDL 358

Query: 460 LGRAGRVKEAYE 471
             +   ++ A+E
Sbjct: 359 YVKCFDIETAHE 370



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 139/270 (51%), Gaps = 2/270 (0%)

Query: 209 GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDA 268
           G+  N  ++      C ++G +   K +HA + K GF     + + ++D+Y     + +A
Sbjct: 5   GIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNA 64

Query: 269 NQYFDEMTEKDLITWNTIIAG-YEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACA-T 326
            + FD++   ++  WN +I+G   K  +S+ L +FS M +E  +P+  TF S++ AC+  
Sbjct: 65  IKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGG 124

Query: 327 LAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSM 386
            A     +Q+HA I+  G   +  + N LID+Y+K G++  ++ +F  +  +D V+W +M
Sbjct: 125 KAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAM 184

Query: 387 MIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV 446
           + G   +G   EAI LF +M KS V P   VF +VL+AC+   L   G +    +  + +
Sbjct: 185 ISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGL 244

Query: 447 NPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
           +    +   +V L  R G +  A ++   M
Sbjct: 245 SSETFVCNALVTLYSRWGNLIAAEQIFSKM 274



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 84/203 (41%), Gaps = 24/203 (11%)

Query: 305 MKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGN 364
           M+      N  T+  +   C    +L   +++HA I + G DG   L + LID+Y   G 
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 365 ISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTA 424
           + ++ K+F ++   ++  W  ++ G  A     + + LF  M+   V PD   F +VL A
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 425 CS------------HAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
           CS            HA ++  G       +    NP       ++DL  + G V  A +L
Sbjct: 121 CSGGKAPFQVTEQIHAKIIHHGF----GSSPLVCNP-------LIDLYSKNGHVDLA-KL 168

Query: 473 IKSMPFKPDESVWGPLLGACKEH 495
           +    F  D   W  ++    ++
Sbjct: 169 VFERLFLKDSVSWVAMISGLSQN 191


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/567 (35%), Positives = 332/567 (58%), Gaps = 12/567 (2%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+  Y   G + +AR LFD M ERDVV W +M+ GY       +A+ +F E  R+ + P+
Sbjct: 224 LVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPD 283

Query: 112 AFTLSSVLKAC--KGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNAR 168
            F++  +L  C   G   L     VHG+A+K GL+  + V NSL+++Y+   C     AR
Sbjct: 284 EFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYF--AR 341

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFS-----IAVRA 223
            VFNDMK  + +SW ++I+  A S      + +F ++L EG++ + ++ +      A +A
Sbjct: 342 EVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKA 401

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C     +  GK IHA  IK GF S+L V + ILDMY +   + +A   F+ ++  D + W
Sbjct: 402 CGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAW 461

Query: 284 NTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
            ++I+G   +G+  + L ++ +M+  R  P+ +TF ++I A + + AL  G+Q+HA +++
Sbjct: 462 TSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIK 521

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
                +  +  +L+DMYAKCGNI D+ ++F +M+ R++  W +M++G   HG+ +EA+ L
Sbjct: 522 LDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNL 581

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLG 461
           F  M   G+ PDR+ F+ +L+ACSHAGL  E  +Y  SM NDY + P  E Y C+VD LG
Sbjct: 582 FKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALG 641

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           RAG V+EA ++I++MPFK   S+   LLGAC+       GK  A R+  L+P     Y++
Sbjct: 642 RAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVL 701

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGV 581
           LSNIYAA  +W++    RK+M+    KK+ G SWI+V++ +  F+ +D+       +Y  
Sbjct: 702 LSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDK 761

Query: 582 LEMLIRHMNETAYEPDIDCLIHDLEGE 608
           +E +++ + E  Y PD + ++ D+E E
Sbjct: 762 VEEMMKTIREDGYVPDTEFVLLDVEDE 788



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 138/465 (29%), Positives = 241/465 (51%), Gaps = 15/465 (3%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYT----SFNCHNQAWTV 99
           G   L+ NL+  Y   G +  AR +FD  PERD+V+W  ++  Y     S + + Q    
Sbjct: 110 GDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLH 169

Query: 100 FVEMVRNEVNPNA-FTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA 158
              ++R  +      TL+ VLK C     L  A  VHG AIK GLE  ++V  +L+++Y+
Sbjct: 170 LFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYS 229

Query: 159 TCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFS 218
            C   M +ARL+F+ M+ ++ V W  ++ GY   G       +F E    G+  + +S  
Sbjct: 230 KCG-RMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQ 288

Query: 219 IAVRAC--ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
           + +  C  A T  +  GK +H   +K G  S++ V NS+++MY +  C   A + F++M 
Sbjct: 289 LILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMK 348

Query: 277 EKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSII-----AACATLAAL 330
             DLI+WN++I+   +S    E +N+F  +  E   P+ FT  SI       AC  L  L
Sbjct: 349 HLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLL 408

Query: 331 SCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY 390
             G+Q+HA  ++ G D +L + + ++DMY KCG++ ++  +F+ +S  D V WTSM+ G 
Sbjct: 409 DQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGC 468

Query: 391 GAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK 450
             +G+  +A+ ++  M +S V PD   F  ++ A S    +++G +   ++   +   + 
Sbjct: 469 VDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDP 528

Query: 451 EIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            +   +VD+  + G +++AY L K M  + + ++W  +L    +H
Sbjct: 529 FVGTSLVDMYAKCGNIEDAYRLFKKMNVR-NIALWNAMLVGLAQH 572



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 175/335 (52%), Gaps = 8/335 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A +L+  Y   G    AR +F++M   D++SW  MI+     +   ++  +F++++   
Sbjct: 323 VANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEG 382

Query: 108 VNPNAFTLSSVL-----KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           + P+ FTL+S+      KAC  +  L     +H  AIK G +  ++V + ++D+Y  C  
Sbjct: 383 LKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCG- 441

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            M NA +VFN +   +DV+WT++I+G   +GN    L ++  M    V  + Y+F+  ++
Sbjct: 442 DMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIK 501

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           A +    +  G+ +HA VIK    S+  V  S++DMY +   + DA + F +M  +++  
Sbjct: 502 ASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIAL 561

Query: 283 WNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALS-CGQQVHAGI 340
           WN ++ G  + G++ E +N+F  MKS    P+  +F  I++AC+     S   + +H+  
Sbjct: 562 WNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMP 621

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEM 375
              G++  +   + L+D   + G + ++ K+   M
Sbjct: 622 NDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETM 656



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 141/287 (49%), Gaps = 13/287 (4%)

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           +R   ST  +  GK  HA ++  G   +  + N++L MY +   LS A Q FD   E+DL
Sbjct: 84  LRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDL 143

Query: 281 ITWNTIIAGYEKS------GSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334
           +TWN I+  Y  S       + E L++F  +++   S    T   ++  C     L   +
Sbjct: 144 VTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAE 203

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
            VH   ++ GL+ ++ ++ AL+++Y+KCG + D++ +F  M +RD+V W  M+ GY   G
Sbjct: 204 GVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLG 263

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV----NPNK 450
             KEA +LF E  +SG+RPD      +L  C  AG  D  L+  K ++   V    + + 
Sbjct: 264 LEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDD--LELGKQVHGIAVKSGLDSDV 321

Query: 451 EIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
            +   +V++  + G    A E+   M    D   W  ++ +C +  L
Sbjct: 322 SVANSLVNMYSKMGCAYFAREVFNDMK-HLDLISWNSMISSCAQSSL 367



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 114/241 (47%), Gaps = 2/241 (0%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           + ++  Y   G +  A  +F+ +   D V+WT MI+G       +QA  ++  M ++ V 
Sbjct: 431 SGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVM 490

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P+ +T ++++KA   + +L     +H   IK       +V  SL+D+YA C  ++++A  
Sbjct: 491 PDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCG-NIEDAYR 549

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           +F  M  +N   W  ++ G A  GN    + +FK M   G+E +  SF   + AC+  G 
Sbjct: 550 LFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGL 609

Query: 230 VSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            S   + +H+    +G    +   + ++D   R   + +A++  + M  K   + N  + 
Sbjct: 610 TSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALL 669

Query: 289 G 289
           G
Sbjct: 670 G 670


>gi|115485519|ref|NP_001067903.1| Os11g0482400 [Oryza sativa Japonica Group]
 gi|77550880|gb|ABA93677.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113645125|dbj|BAF28266.1| Os11g0482400 [Oryza sativa Japonica Group]
          Length = 770

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/580 (36%), Positives = 334/580 (57%), Gaps = 23/580 (3%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            +AT+L+ +Y       +AR LFD MPER+VV+WT ++ GYT  +       VFVEM+  
Sbjct: 114 FVATSLVNAYMRCSAARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEM 173

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
              P+ +TL + L AC     +     VHG AIK G E    + NSL  +YA    S+D+
Sbjct: 174 GRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLG-SLDS 232

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYG-GLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           A   F  +  KN ++WTT+I+  A        G+ +F +ML++GV  N ++ +  +  C 
Sbjct: 233 ALRAFWRIPEKNVITWTTMISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCG 292

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           +   ++ GK + A   K G  +NLPV NS + +Y R     +A + F++M +  +ITWN 
Sbjct: 293 TRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNA 352

Query: 286 IIAGYE------------KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG 333
           +I+GY             +S   + L +F  +K     P+ FTF+SI++ C+ + AL  G
Sbjct: 353 MISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQG 412

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
           +Q+HA  ++ G   ++ + +AL++MY KCG I D+ K F EM  R  VTWTSM+ GY  H
Sbjct: 413 EQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQH 472

Query: 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEI 452
           G  +EAI+LF+EM  +GVRP+ I F+++L+ACS+AGLV+E   YF  M  +Y + P  + 
Sbjct: 473 GQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDH 532

Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLK 512
           YGC++D+  R GRV++A+  IK   F+P+E++W  L+  C+ H    L   AA ++L+LK
Sbjct: 533 YGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELK 592

Query: 513 PNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGM----SWIEVRDKVCGFIAN 568
           P  + TYI+L N+Y +  +W++ A+ RK+M+    +++VG+    SWI ++DKV  F AN
Sbjct: 593 PKGIETYILLLNMYISTERWQDVARVRKLMK----QEDVGILRDRSWITIKDKVYFFRAN 648

Query: 569 DKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           D+       +Y +LE L+       YEP  +  + D E +
Sbjct: 649 DRTHPQATELYQLLENLLEKAKAIGYEPYQNAELSDSEDD 688



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 130/277 (46%), Gaps = 8/277 (2%)

Query: 205 MLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264
           ML EG  +    +   +  C  TG +   + +H  + K G  +++ V  S+++ Y R   
Sbjct: 69  MLTEGKAVQSAMYVPLLHRCVETGSLGAARAVHGHMAKTGASADMFVATSLVNAYMRCSA 128

Query: 265 LSDANQYFDEMTEKDLITWNTIIAGYE-KSGSSECLNMFSKMKSERFSPNCFTFTSIIAA 323
             DA + FD M E++++TW  ++ GY   S  +  L +F +M      P+ +T  + + A
Sbjct: 129 ARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNA 188

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTW 383
           C     +  G+QVH   ++ G +   ++ N+L  +YAK G++  + + F  + +++++TW
Sbjct: 189 CLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITW 248

Query: 384 TSMMIGYGAHGHGKEAIE----LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439
           T+M+    A    +E +E    LF +M+  GV P+     +V++ C     ++ G +   
Sbjct: 249 TTMI---SACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQA 305

Query: 440 SMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
                    N  +    + L  R G   EA  L + M
Sbjct: 306 FSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQM 342



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 81/178 (45%), Gaps = 1/178 (0%)

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           +  ++  C    +L   + VH  + + G   ++ +A +L++ Y +C    D++++F  M 
Sbjct: 81  YVPLLHRCVETGSLGAARAVHGHMAKTGASADMFVATSLVNAYMRCSAARDARRLFDGMP 140

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
           +R++VTWT+++ GY  +      +E+F EM++ G  P      A L AC  +  VD G +
Sbjct: 141 ERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQ 200

Query: 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKE 494
                  Y       +   +  L  + G +  A      +P K +   W  ++ AC E
Sbjct: 201 VHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEK-NVITWTTMISACAE 257


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/582 (34%), Positives = 332/582 (57%), Gaps = 41/582 (7%)

Query: 60  GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119
           G ++EA +LF  MPERD  +W  M++G+   +   +A   F  M +     N ++ +SVL
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVL 159

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179
            AC G+  ++    VH +  K      +Y+ ++L+D+Y+ C  ++++A+ VF++M  +N 
Sbjct: 160 SACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCG-NVNDAQRVFDEMGDRNV 218

Query: 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAA 239
           VSW +LIT +  +G     L VF+ ML   VE +  + +  + ACAS   +  G+ +H  
Sbjct: 219 VSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGR 278

Query: 240 VIKHG-FGSNLPVMNSILDMYCRFDCLSDANQYFD------------------------- 273
           V+K+    +++ + N+ +DMY +   + +A   FD                         
Sbjct: 279 VVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKA 338

Query: 274 ------EMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACAT 326
                 +M E+++++WN +IAGY ++G +E  L++F  +K E   P  ++F +I+ ACA 
Sbjct: 339 ARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACAD 398

Query: 327 LAALSCGQQVHAGIVRRGL------DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDL 380
           LA L  G Q H  +++ G       + ++ + N+LIDMY KCG + +   +F +M +RD 
Sbjct: 399 LAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDC 458

Query: 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS 440
           V+W +M+IG+  +G+G EA+ELF EM++SG +PD I  + VL+AC HAG V+EG  YF S
Sbjct: 459 VSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSS 518

Query: 441 MN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN 499
           M  D+ V P ++ Y C+VDLLGRAG ++EA  +I+ MP +PD  +WG LL ACK HR   
Sbjct: 519 MTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNIT 578

Query: 500 LGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVR 559
           LGK  A ++L+++P+  G Y++LSN+YA  GKWE+    RK MR  G  K+ G SWI+++
Sbjct: 579 LGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQ 638

Query: 560 DKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCL 601
                F+  DK     + ++ +L++LI  M       +I  L
Sbjct: 639 GHDHVFMVKDKSHPRKKQIHSLLDILIAEMRPEQDHTEIGSL 680



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 115/421 (27%), Positives = 192/421 (45%), Gaps = 47/421 (11%)

Query: 40  LIPKGPSI----LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQ 95
           LI K P +    + + L+  Y   G + +A+ +FDEM +R+VVSW  +I  +       +
Sbjct: 177 LIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVE 236

Query: 96  AWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIK-EGLEGSIYVENSLM 154
           A  VF  M+ + V P+  TL+SV+ AC  + ++     VHG  +K + L   I + N+ +
Sbjct: 237 ALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFV 296

Query: 155 DVYATC------------------------------CISMDNARLVFNDMKWKNDVSWTT 184
           D+YA C                                S   ARL+F  M  +N VSW  
Sbjct: 297 DMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNA 356

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG 244
           LI GY  +G     L +F  +  E V    YSF+  ++ACA    +  G   H  V+KHG
Sbjct: 357 LIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHG 416

Query: 245 FG------SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSE 297
           F        ++ V NS++DMY +  C+ +    F +M E+D ++WN +I G+ ++G  +E
Sbjct: 417 FKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNE 476

Query: 298 CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-GLDGNLALANALI 356
            L +F +M      P+  T   +++AC     +  G+   + + R  G+         ++
Sbjct: 477 ALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMV 536

Query: 357 DMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGH---GKEAIELFDEMVKSGVR 412
           D+  + G + +++ +  EM    D V W S++     H +   GK   E   E+  S   
Sbjct: 537 DLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSG 596

Query: 413 P 413
           P
Sbjct: 597 P 597



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 151/281 (53%), Gaps = 33/281 (11%)

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
           + + +HA+VIK GF + + + N ++D Y +   L D  Q FD+M ++++ TWN+++ G  
Sbjct: 38  YVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLT 97

Query: 292 KSG--------------------------------SSECLNMFSKMKSERFSPNCFTFTS 319
           K G                                  E L  F+ M  E F  N ++F S
Sbjct: 98  KLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFAS 157

Query: 320 IIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD 379
           +++AC+ L  ++ G QVH+ I +     ++ + +AL+DMY+KCGN++D+Q++F EM DR+
Sbjct: 158 VLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRN 217

Query: 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK-YF 438
           +V+W S++  +  +G   EA+++F  M++S V PD +   +V++AC+    +  G + + 
Sbjct: 218 VVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHG 277

Query: 439 KSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
           + + +  +  +  +    VD+  +  R+KEA  +  SMP +
Sbjct: 278 RVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIR 318



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 110/247 (44%), Gaps = 41/247 (16%)

Query: 317 FTSIIAAC--ATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSE 374
           F  ++ +C  + L+A+   + VHA +++ G    + + N LID Y+KCG++ D +++F +
Sbjct: 22  FAKLLDSCIKSKLSAIYV-RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDK 80

Query: 375 -------------------------------MSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
                                          M +RD  TW SM+ G+  H   +EA+  F
Sbjct: 81  MPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYF 140

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
             M K G   +   F +VL+ACS    +++G++    +       +  I   +VD+  + 
Sbjct: 141 AMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKC 200

Query: 464 GRVKEAYELIKSMPFKPDESV--WGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           G V +A  +   M    D +V  W  L+  C E   P +  L   +++ L+  +    + 
Sbjct: 201 GNVNDAQRVFDEM---GDRNVVSWNSLI-TCFEQNGPAVEALDVFQMM-LESRVEPDEVT 255

Query: 522 LSNIYAA 528
           L+++ +A
Sbjct: 256 LASVISA 262


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/547 (37%), Positives = 321/547 (58%), Gaps = 4/547 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y    +I+ A  +FD MP +D +SW  +I+G TS   +++A  +FV M       +
Sbjct: 451 LISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELD 510

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
           + TL SVL AC          +VHG ++K GL G   + N+L+D+Y+ C     +   +F
Sbjct: 511 STTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCS-DWHSTNQIF 569

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
            +M  KN VSWT +IT Y  +G      G+ +EM+L+G++ + ++ +  +   A    + 
Sbjct: 570 RNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLK 629

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            GK +H   I++G    LPV N++++MY     + +A   FD +T KD+I+WNT+I GY 
Sbjct: 630 QGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYS 689

Query: 292 KSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           ++  ++E  ++FS M  + F PN  T T I+ A A++++L  G+++HA  +RRG   +  
Sbjct: 690 RNNFANESFSLFSDMLLQ-FKPNTVTMTCILPAVASISSLERGREIHAYALRRGFLEDSY 748

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
            +NAL+DMY KCG +  ++ +F  ++ ++L++WT M+ GYG HG GK+A+ LF++M  SG
Sbjct: 749 TSNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSG 808

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEA 469
           V PD   F A+L AC H+GL  EG K+F +M  +Y + P  + Y C+VDLL   G +KEA
Sbjct: 809 VEPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKEA 868

Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529
           +E I+SMP +PD S+W  LL  C+ HR   L +  A RV  L+P   G Y++L+NIYA  
Sbjct: 869 FEFIESMPIEPDSSIWVSLLHGCRIHRDVKLAEKVADRVFKLEPENTGYYVLLANIYAEA 928

Query: 530 GKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHM 589
            +WE   K +  + G G ++  G SWIEVR KV  FIA+++       +   L+ + R M
Sbjct: 929 ERWEAVKKLKNKIGGRGLRENTGCSWIEVRGKVHVFIADNRNHPEWNRIAEFLDHVARRM 988

Query: 590 NETAYEP 596
            E  ++P
Sbjct: 989 REEGHDP 995



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/396 (29%), Positives = 199/396 (50%), Gaps = 14/396 (3%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPER--DVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           S+L   L+ +Y   G +  AR +FDEMP R  DV  WT +++ Y       +  ++F +M
Sbjct: 130 SVLGKRLVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQM 189

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
               V+P+A  +S VLK    + S++   ++HG+  K GL  +  V N+L+ +Y+ C   
Sbjct: 190 QCCGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGC- 248

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           M++A  VF+ M  ++ +SW + I+GY  +G     + +F +M  EG E++  +    + A
Sbjct: 249 MEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPA 308

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILD---------MYCRFDCLSDANQYFDE 274
           CA  G+   GK++H   +K G   +L  + S +D         MY +   +  A + FD 
Sbjct: 309 CAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDA 368

Query: 275 MTEK-DLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSC 332
           M  K ++  WN I+ GY K+    E L +F +M     +P+    + ++     L+    
Sbjct: 369 MPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARD 428

Query: 333 GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA 392
           G   H  +V+ G     A+ NALI  YAK   I ++  +F  M  +D ++W S++ G  +
Sbjct: 429 GLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTS 488

Query: 393 HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHA 428
           +G   EAIELF  M   G   D    ++VL AC+ +
Sbjct: 489 NGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARS 524



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 110/383 (28%), Positives = 195/383 (50%), Gaps = 7/383 (1%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G + LA  L+  Y +         +F  M +++VVSWT MI  YT     ++   +  EM
Sbjct: 544 GETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEM 603

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           V + + P+ F ++SVL    G +SL     VHG AI+ G+E  + V N+LM++Y   C +
Sbjct: 604 VLDGIKPDVFAVTSVLHGFAGDESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVN-CRN 662

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           M+ ARLVF+ +  K+ +SW TLI GY+ +        +F +MLL+  + N  + +  + A
Sbjct: 663 MEEARLVFDHVTNKDIISWNTLIGGYSRNNFANESFSLFSDMLLQ-FKPNTVTMTCILPA 721

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
            AS   +  G+ IHA  ++ GF  +    N+++DMY +   L  A   FD +T+K+LI+W
Sbjct: 722 VASISSLERGREIHAYALRRGFLEDSYTSNALVDMYVKCGALLVARVLFDRLTKKNLISW 781

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
             +IAGY   G   + + +F +M+     P+  +F++I+ AC      + G +    + +
Sbjct: 782 TIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAILYACCHSGLTAEGWKFFNAMRK 841

Query: 343 R-GLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEAI 400
              ++  L     ++D+ +  GN+ ++ +    M  + D   W S++ G   H   K A 
Sbjct: 842 EYKIEPKLKHYTCIVDLLSHTGNLKEAFEFIESMPIEPDSSIWVSLLHGCRIHRDVKLAE 901

Query: 401 ELFDEMVKSGVRPDRIVFMAVLT 423
           ++ D + K  + P+   +  +L 
Sbjct: 902 KVADRVFK--LEPENTGYYVLLA 922



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 110/396 (27%), Positives = 195/396 (49%), Gaps = 18/396 (4%)

Query: 117 SVLKACKGMKSLSNAALVHGM--AIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM 174
           +V++ C   +SL  A   H +  A   G+ GS+ +   L+  Y  C   +  AR+VF++M
Sbjct: 99  AVVQLCGEERSLEAARRAHALVRAGTGGIIGSV-LGKRLVLAYLKCG-DLGGARMVFDEM 156

Query: 175 KWK-NDVS-WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSF 232
             +  DV  WT+L++ YA +G+   G+ +F++M   GV  + ++ S  ++  AS G ++ 
Sbjct: 157 PPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSITE 216

Query: 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEK 292
           G++IH  + K G G    V N+++ +Y R  C+ DA Q FD M  +D I+WN+ I+GY  
Sbjct: 217 GEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFS 276

Query: 293 SG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL-- 349
           +G     +++FSKM SE    +  T  S++ ACA L     G+ VH   ++ GL  +L  
Sbjct: 277 NGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLES 336

Query: 350 -------ALANALIDMYAKCGNISDSQKIFSEMSDRDLV-TWTSMMIGYGAHGHGKEAIE 401
                  AL + L+ MY KCG++  ++++F  M  +  V  W  +M GY      +E++ 
Sbjct: 337 VQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLL 396

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461
           LF++M + G+ PD      +L   +      +GL     +          +   ++    
Sbjct: 397 LFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYA 456

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
           ++  +  A  +   MP + D   W  ++  C  + L
Sbjct: 457 KSNMIDNAVLVFDRMPHQ-DTISWNSVISGCTSNGL 491


>gi|357128207|ref|XP_003565766.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Brachypodium distachyon]
          Length = 734

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/553 (35%), Positives = 319/553 (57%), Gaps = 4/553 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            ++T L+  Y   GLI +A+ +FDEMP R+ VSW  M+AGY +  C  +A+ +F +M+  
Sbjct: 154 FVSTALLNMYCKLGLIPDAQLVFDEMPHRNEVSWAAMVAGYAARKCSQEAFELFRQMLGE 213

Query: 107 -EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             ++ N F  ++VL A      L     VHG+ +K+G+ G + VENSL+ +YA     MD
Sbjct: 214 CPLHKNEFVATAVLSAISVPLGLPMGVQVHGLVVKDGMVGFVSVENSLVTMYAKAGC-MD 272

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A  VF   K +N ++W+ +ITGY+ +GN    + +F +M   G     ++    + AC+
Sbjct: 273 AAFHVFESSKERNSITWSAMITGYSQNGNAESAVRMFSQMHAAGFPPTEFTLVGVLNACS 332

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
             G +  GK  H  ++K GF   + V ++++DMY +  C+ DA + F++ +E D++ W  
Sbjct: 333 DVGTLMEGKQAHGLMVKLGFEVQVYVKSALVDMYAKCGCIGDAKECFNQFSELDIVLWTA 392

Query: 286 IIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           ++ G+ ++G  E  L ++++M  E   PN  T TS++ ACA LAAL  G+Q+H  I++ G
Sbjct: 393 MVTGHVQNGEFEQALMLYARMDKEGVFPNTLTITSLLRACAGLAALEPGKQLHTQILKFG 452

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
                ++ +AL  MY+KCGN+ D   +F  M  RD++ W S++ G+  +G G +AI LF+
Sbjct: 453 FGLGASVGSALSTMYSKCGNLEDGMVVFRRMPHRDVIAWNSIISGFSQNGRGNDAINLFE 512

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRA 463
           EM   G  PD + F+ VL ACSH GLVD G  YF+SM  DY + P  + Y C+VD+L RA
Sbjct: 513 EMKLEGTAPDPVTFINVLCACSHMGLVDRGWTYFRSMIKDYGLTPRLDHYACMVDILSRA 572

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G + EA + I+S+       +W  +LGAC+  R  ++G  A  +++DL       YI+LS
Sbjct: 573 GMLSEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGEKLMDLGTGDSAAYILLS 632

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           NIYAA+ KW +  + R +M+ +G  K+ G SW+E+  +V  F+  ++     + +   L 
Sbjct: 633 NIYAAQRKWNDVERVRYLMKLVGVSKDPGCSWVELNSRVHVFVVGEQQHPDAEIINTELR 692

Query: 584 MLIRHMNETAYEP 596
            L +HM +  Y P
Sbjct: 693 RLGKHMKDEGYNP 705



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 173/345 (50%), Gaps = 8/345 (2%)

Query: 134 VHGMAIKEGLEGSIYVENSLMDVYATCC-ISMDNARLVFNDMKW--KNDVSWTTLITGYA 190
           +H  A+K G      V NSL+  Y++   + +  A  VF D+    ++  SW +L+   +
Sbjct: 34  LHAWALKSGSSSHAPVSNSLITFYSSFPRLFLPAAFAVFADIPAAARDVASWNSLLNPLS 93

Query: 191 HSGNGYGGLGVFKEMLLEGVEM-NPYSFSIAVRACASTGWVSFGKLIHAAVIK-HGFGSN 248
           H       L  F+ ML     + +P+SF+ A  A A     S G ++HA   K     SN
Sbjct: 94  HH-RPLAALSHFRSMLSSSTILPSPHSFAAAFTAAARAHSASAGAVVHALACKLPSASSN 152

Query: 249 LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKS 307
           + V  ++L+MYC+   + DA   FDEM  ++ ++W  ++AGY  +  S E   +F +M  
Sbjct: 153 VFVSTALLNMYCKLGLIPDAQLVFDEMPHRNEVSWAAMVAGYAARKCSQEAFELFRQMLG 212

Query: 308 E-RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNIS 366
           E     N F  T++++A +    L  G QVH  +V+ G+ G +++ N+L+ MYAK G + 
Sbjct: 213 ECPLHKNEFVATAVLSAISVPLGLPMGVQVHGLVVKDGMVGFVSVENSLVTMYAKAGCMD 272

Query: 367 DSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS 426
            +  +F    +R+ +TW++M+ GY  +G+ + A+ +F +M  +G  P     + VL ACS
Sbjct: 273 AAFHVFESSKERNSITWSAMITGYSQNGNAESAVRMFSQMHAAGFPPTEFTLVGVLNACS 332

Query: 427 HAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471
             G + EG +    M          +   +VD+  + G + +A E
Sbjct: 333 DVGTLMEGKQAHGLMVKLGFEVQVYVKSALVDMYAKCGCIGDAKE 377



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 123/261 (47%), Gaps = 29/261 (11%)

Query: 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRFD--CLSDANQYFDEM--TEKDLITWNTIIA 288
           G+ +HA  +K G  S+ PV NS++  Y  F    L  A   F ++    +D+ +WN+++ 
Sbjct: 31  GEALHAWALKSGSSSHAPVSNSLITFYSSFPRLFLPAAFAVFADIPAAARDVASWNSLLN 90

Query: 289 GYEKSGSSECLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR-RGLD 346
                     L+ F  M  S    P+  +F +   A A   + S G  VHA   +     
Sbjct: 91  PLSHHRPLAALSHFRSMLSSSTILPSPHSFAAAFTAAARAHSASAGAVVHALACKLPSAS 150

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            N+ ++ AL++MY K G I D+Q +F EM  R+ V+W +M+ GY A    +EA ELF +M
Sbjct: 151 SNVFVSTALLNMYCKLGLIPDAQLVFDEMPHRNEVSWAAMVAGYAARKCSQEAFELFRQM 210

Query: 407 V-KSGVRPDRIVFMAVLTACS-----------HAGLVDEGLKYFKSMNDYNVNPNKEIYG 454
           + +  +  +  V  AVL+A S           H  +V +G+  F S+ +           
Sbjct: 211 LGECPLHKNEFVATAVLSAISVPLGLPMGVQVHGLVVKDGMVGFVSVEN----------- 259

Query: 455 CVVDLLGRAGRVKEAYELIKS 475
            +V +  +AG +  A+ + +S
Sbjct: 260 SLVTMYAKAGCMDAAFHVFES 280


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/547 (38%), Positives = 316/547 (57%), Gaps = 5/547 (0%)

Query: 62  IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121
           I+ A  +F+ M  +D+VSWT ++AGY       +A  + ++M      P++ TL S+L A
Sbjct: 196 IDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPA 255

Query: 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS 181
              MK+L     +HG A + G E  + V N+L+D+Y  C  S   ARLVF  M+ K  VS
Sbjct: 256 VADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCG-SARIARLVFKGMRSKTVVS 314

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           W T+I G A +G        F +ML EG      +    + ACA+ G +  G  +H  + 
Sbjct: 315 WNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLD 374

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLN 300
           K    SN+ VMNS++ MY +   +  A   F+ + EK  +TWN +I GY ++G   E LN
Sbjct: 375 KLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNL-EKTNVTWNAMILGYAQNGCVKEALN 433

Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360
           +F  M+S+    +CFT   +I A A  +     + +H   VR  +D N+ ++ AL+DMYA
Sbjct: 434 LFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYA 493

Query: 361 KCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420
           KCG I  ++K+F  M +R ++TW +M+ GYG HG GKE ++LF+EM K  V+P+ I F++
Sbjct: 494 KCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLS 553

Query: 421 VLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
           V++ACSH+G V+EGL  FKSM  DY + P  + Y  +VDLLGRAG++ +A+  I+ MP K
Sbjct: 554 VISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIK 613

Query: 480 PDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFR 539
           P  SV G +LGACK H+   LG+ AA ++  L P+  G +++L+NIYA+   W++ AK R
Sbjct: 614 PGISVLGAMLGACKIHKNVELGEKAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVR 673

Query: 540 KIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDID 599
             M   G  K  G SW+E+R+++  F +       ++ +Y  LE L   +    Y PD D
Sbjct: 674 TAMEDKGLHKTPGCSWVELRNEIHTFYSGSTNHPESKKIYAFLETLGDEIKAAGYVPDPD 733

Query: 600 CLIHDLE 606
             IHD+E
Sbjct: 734 S-IHDVE 739



 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 136/474 (28%), Positives = 228/474 (48%), Gaps = 8/474 (1%)

Query: 8   SYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKG---PSILATNLIKSYFDEGLIEE 64
           S     + H+ P ++     + KK   Q  P +I  G     +  T +I  +   G   E
Sbjct: 38  SIPTRVYSHRHPSVVLLENCTSKKELYQILPFIIKNGFYNEHLFQTKVISLFCKFGSNSE 97

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           A  +F+ +  +  V + +M+ GY   +    A   F+ M+ +EV       + +L+ C  
Sbjct: 98  AARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQLCGE 157

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTT 184
              L     +HG+ I  G E +++V  ++M +YA C   +DNA  +F  M+ K+ VSWTT
Sbjct: 158 NLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKC-RQIDNAYKMFERMQHKDLVSWTT 216

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG 244
           L+ GYA +G+    L +  +M   G + +  +    + A A    +  G+ IH    + G
Sbjct: 217 LVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSG 276

Query: 245 FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFS 303
           F S + V N++LDMY +      A   F  M  K +++WNT+I G  ++G S E    F 
Sbjct: 277 FESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFL 336

Query: 304 KMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG 363
           KM  E   P   T   ++ ACA L  L  G  VH  + +  LD N+++ N+LI MY+KC 
Sbjct: 337 KMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCK 396

Query: 364 NISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLT 423
            +  +  IF+ +   + VTW +M++GY  +G  KEA+ LF  M   G++ D    + V+T
Sbjct: 397 RVDIAASIFNNLEKTN-VTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVIT 455

Query: 424 ACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
           A +    V+   K+   +     ++ N  +   +VD+  + G +K A +L   M
Sbjct: 456 ALADFS-VNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMM 508



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 149/303 (49%), Gaps = 15/303 (4%)

Query: 240 VIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SEC 298
           +IK+GF +       ++ ++C+F   S+A + F+ +  K  + ++ ++ GY K+ S  + 
Sbjct: 70  IIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDA 129

Query: 299 LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDM 358
           L  F +M  +        +  ++  C     L  G+++H  I+  G + NL +  A++ +
Sbjct: 130 LCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSL 189

Query: 359 YAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVF 418
           YAKC  I ++ K+F  M  +DLV+WT+++ GY  +GH K A++L  +M ++G +PD +  
Sbjct: 190 YAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTL 249

Query: 419 MAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE----IYGCVVDLLGRAGRVKEAYELIK 474
           +++L A +      + L+  +S++ Y      E    +   ++D+  + G  + A  + K
Sbjct: 250 VSILPAVADM----KALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFK 305

Query: 475 SMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD-----LKPNMMGTYIILSNIYAAE 529
            M  K   S W  ++  C ++          L++LD      +  MMG  +  +N+   E
Sbjct: 306 GMRSKTVVS-WNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLE 364

Query: 530 GKW 532
             W
Sbjct: 365 RGW 367



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 8/113 (7%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            ++T L+  Y   G I+ AR LFD M ER V++W  MI GY +     +   +F EM + 
Sbjct: 483 FVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKG 542

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALV-HGMAIKEGLEGSIYVENSLMDVYA 158
            V PN  T  SV+ AC      S++  V  G+ + + ++   Y+E + MD Y+
Sbjct: 543 AVKPNDITFLSVISAC------SHSGFVEEGLLLFKSMQEDYYLEPT-MDHYS 588


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/565 (35%), Positives = 318/565 (56%), Gaps = 3/565 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + +   LI  Y   G + +AR +FD M  RD VSWT +   Y       ++   +  M++
Sbjct: 180 ATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQ 239

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             V P+  T  +VL AC  + +L     +H   ++      + V  +L  +Y  C  ++ 
Sbjct: 240 EGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCG-AVK 298

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +AR VF  +  ++ ++W T+I G   SG      G+F  ML E V  +  ++   + ACA
Sbjct: 299 DAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACA 358

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
             G ++ GK IHA  +K G  S++   N++++MY +   + DA Q FD M ++D+++W  
Sbjct: 359 RPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTA 418

Query: 286 IIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           ++ GY   G   E  + F KM  +    N  T+  ++ AC+   AL  G+++HA +V+ G
Sbjct: 419 LVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAG 478

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           +  +LA+ANAL+ MY KCG++ D+ ++   MS RD+VTW +++ G   +G G EA++ F+
Sbjct: 479 IFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFE 538

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRA 463
            M    +RP+   F+ V++AC    LV+EG + F SM  DY + P ++ Y C+VD+L RA
Sbjct: 539 VMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARA 598

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G + EA ++I +MPFKP  ++WG LL AC+ H    +G+ AA + L L+P   GTY+ LS
Sbjct: 599 GHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLS 658

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
            IYAA G W + AK RK+M+  G KKE G SWIEV  +V  F+A D+    T+ +Y  LE
Sbjct: 659 FIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEVAGEVHSFVAGDQSHPRTEEIYSELE 718

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGE 608
            L + +    Y PD   ++HDL+ E
Sbjct: 719 ALTKQIKSLGYVPDTRFVMHDLDQE 743



 Score =  273 bits (699), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 159/504 (31%), Positives = 270/504 (53%), Gaps = 11/504 (2%)

Query: 45  PSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           P++   N L+K Y   G + EAR LFD+   + VVSW VMI+GY       +A+ +F  M
Sbjct: 77  PNVYIINTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLM 136

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
            +  + P+ FT  S+L AC    +L+    VH   ++ GL  +  V N+L+ +YA C  S
Sbjct: 137 QQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCG-S 195

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           + +AR VF+ M  +++VSWTTL   YA SG     L  +  ML EGV  +  ++   + A
Sbjct: 196 VRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSA 255

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C S   +  GK IHA +++    S++ V  ++  MY +   + DA + F+ +  +D+I W
Sbjct: 256 CGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAW 315

Query: 284 NTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           NT+I G   SG   E   MF +M  E  +P+  T+ +I++ACA    L+CG+++HA  V+
Sbjct: 316 NTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVK 375

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            GL  ++   NALI+MY+K G++ D++++F  M  RD+V+WT+++ GY   G   E+   
Sbjct: 376 DGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFST 435

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           F +M++ GV  ++I +M VL ACS+   +  G +    +    +  +  +   ++ +  +
Sbjct: 436 FKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFK 495

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEH--RLPNLGKLAALRVLDLKPNMMGTYI 520
            G V++A  + + M  + D   W  L+G   ++   L  L K   ++  +++PN      
Sbjct: 496 CGSVEDAIRVSEGMSTR-DVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVN 554

Query: 521 ILSNI----YAAEGKWEEFAKFRK 540
           ++S         EG+  +FA  RK
Sbjct: 555 VMSACRVRNLVEEGR-RQFASMRK 577



 Score =  225 bits (574), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 115/381 (30%), Positives = 214/381 (56%), Gaps = 3/381 (0%)

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           +++    +L++C   K L+    VH   ++ G++ ++Y+ N+L+ +Y  C  S++ AR +
Sbjct: 43  DSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCG-SVNEARRL 101

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F+    K+ VSW  +I+GYAH G G     +F  M  EG+E + ++F   + AC+S   +
Sbjct: 102 FDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAAL 161

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
           ++G+ +H  V++ G  +N  V N+++ MY +   + DA + FD M  +D ++W T+   Y
Sbjct: 162 NWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAY 221

Query: 291 EKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
            +SG + E L  +  M  E   P+  T+ ++++AC +LAAL  G+Q+HA IV      ++
Sbjct: 222 AESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDV 281

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
            ++ AL  MY KCG + D++++F  + +RD++ W +M+ G    G  +EA  +F  M+K 
Sbjct: 282 RVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKE 341

Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
            V PDR+ ++A+L+AC+  G +  G +         +  +      ++++  +AG +K+A
Sbjct: 342 CVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDA 401

Query: 470 YELIKSMPFKPDESVWGPLLG 490
            ++   MP K D   W  L+G
Sbjct: 402 RQVFDRMP-KRDVVSWTALVG 421



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 88/296 (29%), Positives = 174/296 (58%), Gaps = 2/296 (0%)

Query: 196 YGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSI 255
           Y    V + +  +G +++ Y +   +++C     ++ GK +H  +++ G   N+ ++N++
Sbjct: 26  YAPADVLQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTL 85

Query: 256 LDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNC 314
           L +Y     +++A + FD+ + K +++WN +I+GY   G   E  N+F+ M+ E   P+ 
Sbjct: 86  LKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDK 145

Query: 315 FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSE 374
           FTF SI++AC++ AAL+ G++VH  ++  GL  N  + NALI MYAKCG++ D++++F  
Sbjct: 146 FTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDA 205

Query: 375 MSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434
           M+ RD V+WT++   Y   G+ +E+++ +  M++ GVRP RI +M VL+AC     +++G
Sbjct: 206 MASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKG 265

Query: 435 LKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490
            +    + +   + +  +   +  +  + G VK+A E+ + +P + D   W  ++G
Sbjct: 266 KQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNR-DVIAWNTMIG 320


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 227/647 (35%), Positives = 343/647 (53%), Gaps = 79/647 (12%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMP--ERDVVSWTVMIAGYTSFNCHNQAWT 98
           IP+   I  T LI +Y   G ++ AR +F+E P   RD V +  MI GY+  N  + A  
Sbjct: 74  IPQPDVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIE 133

Query: 99  VFVEMVRNEVNPNAFTLSSVLKACKGM-KSLSNAALVHGMAIKEGLEGSIYVENSLMDVY 157
           +F  M      P+ FT +SVL A   +         +HG  +K G+E    V N+L+ VY
Sbjct: 134 LFRAMRWANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVY 193

Query: 158 ATCCIS--------MDNARLVFNDMKWKNDVSWTTLITGYAHSGN--------------- 194
             C  S        M +AR +F++M  +N+  WTTLITGY  +G+               
Sbjct: 194 VKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQP 253

Query: 195 ---------GY-------GGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHA 238
                    GY         L +F++M L GV+++  +++  + ACA  G+   GK +HA
Sbjct: 254 GIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHA 313

Query: 239 AVIKHGFGSN----LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG 294
            ++K+    +    L V N+++ +Y ++  +  A + F EM  KD+ITWNT+++GY  +G
Sbjct: 314 YILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAG 373

Query: 295 SSE--------------------------------CLNMFSKMKSERFSPNCFTFTSIIA 322
             E                                 L +F++MK + + PN + F   I 
Sbjct: 374 RMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAIT 433

Query: 323 ACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVT 382
           AC+ L AL  G+Q+HA IV  G D  L++ NA+I MYA+CG +  ++ +F  M   D V+
Sbjct: 434 ACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVS 493

Query: 383 WTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM- 441
           W SM+   G HGHG +AIEL+++M+K G+ PDR  F+ VL+ACSHAGLV+EG +YF SM 
Sbjct: 494 WNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSML 553

Query: 442 NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLG 501
            +Y + P ++ Y  ++DL  RAG+  +A  +I SMPF+    +W  LL  C+ H   +LG
Sbjct: 554 ENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLG 613

Query: 502 KLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDK 561
             AA ++  L P   GTY++LSN+YA+ G+W + A+ RK+MR  G KKE   SW EV +K
Sbjct: 614 IEAAEKLFKLIPQHDGTYVLLSNMYASLGRWNDVARTRKLMRDRGVKKEPACSWTEVENK 673

Query: 562 VCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           V  F+ +D +      +Y  LE L   M +  Y PD   ++HD+E E
Sbjct: 674 VHVFLVDDTVHPEVLSIYNYLEKLNLEMKKIGYIPDTKYVLHDMESE 720



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 141/339 (41%), Gaps = 82/339 (24%)

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
           S  + +H  VI  GF     ++N ++D+Y +      A + FDE+ + D+I   T+I  Y
Sbjct: 30  SLARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIARTTLITAY 89

Query: 291 EKSGS----------------------------------SECLNMFSKMKSERFSPNCFT 316
              G+                                     + +F  M+   F P+ FT
Sbjct: 90  SALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFT 149

Query: 317 FTSIIAACATL--AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG---------NI 365
           F S+++A   +      CG Q+H  +V+ G++   A+ NAL+ +Y KC           +
Sbjct: 150 FASVLSASTLIFYDERQCG-QMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLM 208

Query: 366 SDSQKIFSEMSDRDLVTWTSMMIGY-------GA------------------------HG 394
           + ++K+F EM  R+   WT+++ GY       GA                        HG
Sbjct: 209 ASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHG 268

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE--- 451
             ++A+ LF +M   GV+ D   + +V++AC+  G    G +    +    +NP+++   
Sbjct: 269 LFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLL 328

Query: 452 -IYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
            +   ++ L  + G+V  A ++   MP K D   W  LL
Sbjct: 329 SVGNTLITLYWKYGKVDGARKIFYEMPVK-DIITWNTLL 366



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 67/131 (51%), Gaps = 2/131 (1%)

Query: 327 LAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSM 386
           L++ S  + VH  ++  G      + N LID+Y K  +   ++K+F E+   D++  T++
Sbjct: 26  LSSYSLARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIARTTL 85

Query: 387 MIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV 446
           +  Y A G+ K A E+F+E     +R D + + A++T  SH       ++ F++M   N 
Sbjct: 86  ITAYSALGNLKMAREIFNE-TPLDMR-DTVFYNAMITGYSHMNDGHSAIELFRAMRWANF 143

Query: 447 NPNKEIYGCVV 457
            P+   +  V+
Sbjct: 144 QPDDFTFASVL 154


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 226/682 (33%), Positives = 363/682 (53%), Gaps = 84/682 (12%)

Query: 5   RLLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPP----LIPKGP-SILATNLIKSYFDE 59
           RLL+ +A  H    PP    +L+ +   ++  D P    L    P  + AT+L+ +Y   
Sbjct: 46  RLLT-SALLHA---PPHPHLTLRLIHLYTLSGDLPAAATLFRADPCPVAATSLVAAYAAA 101

Query: 60  GLIEEARTLFDEMPE--RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN-EVNPNAFTLS 116
           G +  A + FD +P+  RD V    +I+ Y   +    A  VF  ++ +  + P+ ++ +
Sbjct: 102 GRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFT 161

Query: 117 SVLKACKGMKSLS--NAALVHGMAIKEGLEGSIYVENSLMDVYATCCI------------ 162
           ++L A   + ++S  + A +    +K G  G + V N+L+ +Y  C              
Sbjct: 162 ALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLD 221

Query: 163 ---------------------SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGV 201
                                 +  AR VF ++  K DV W  +I+GY HSG       +
Sbjct: 222 EMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFEL 281

Query: 202 FKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAV--IKHGF--GSNLPVMNSILD 257
           F+ M+LE V ++ ++F+  + ACA+ G+ + GK +H  +  ++  F   + LPV N+++ 
Sbjct: 282 FRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVT 341

Query: 258 MYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG----------------------- 294
           +Y +   ++ A + FD M  KD+++WNTI++GY +S                        
Sbjct: 342 LYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVM 401

Query: 295 ---------SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
                    S + L +F++M++E   P  +T+   I+AC  L +L  G+Q+H  +V+ G 
Sbjct: 402 VSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGF 461

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           +G+ +  NALI MYA+CG + ++  +F  M + D V+W +M+   G HGHG+EA+ELFD 
Sbjct: 462 EGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDR 521

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAG 464
           MV  G+ PDRI F+ VLTAC+H+GLVDEG +YF+SM  D+ + P ++ Y  ++DLLGRAG
Sbjct: 522 MVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAG 581

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           R+ EA +LIK+MPF+P  S+W  +L  C+      LG  AA ++  + P   GTYI+LSN
Sbjct: 582 RIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSN 641

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
            Y+A G+W + A+ RK+MR  G KKE G SWIE  +KV  F+  D        VY  LEM
Sbjct: 642 TYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFVVGDTKHPEAHKVYKFLEM 701

Query: 585 LIRHMNETAYEPDIDCLIHDLE 606
           +   M +  Y PD   ++HD+E
Sbjct: 702 VGARMRKLGYVPDTKVVLHDME 723


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/605 (35%), Positives = 340/605 (56%), Gaps = 16/605 (2%)

Query: 19  PPIIKQSLQSVKKSSIQSD--------PPLIPKG---PSILATNLIKSYFDEGLIEEART 67
           PP+++     +K  + + D          L  +G    ++ AT L   Y       +AR 
Sbjct: 56  PPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARR 115

Query: 68  LFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE-VNPNAFTLSSVLKACKGMK 126
           +FD MP RD V+W  ++AGY        A  + V M   E   P++ TL SVL AC   +
Sbjct: 116 VFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANAR 175

Query: 127 SLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLI 186
           +L+     H  AI+ GLE  + V  +++D Y  C   +  AR+VF+ M  KN VSW  +I
Sbjct: 176 ALAACREAHAFAIRSGLEELVNVATAILDAYCKCG-DIRAARVVFDWMPTKNSVSWNAMI 234

Query: 187 TGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFG 246
            GYA +G+    L +F  M+ EGV++   S   A++AC   G +  G  +H  +++ G  
Sbjct: 235 DGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLD 294

Query: 247 SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKM 305
           SN+ VMN+++ MY +   +  A+  FDE+  +  ++WN +I G  ++G SE  + +F++M
Sbjct: 295 SNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRM 354

Query: 306 KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNI 365
           + E   P+ FT  S+I A A ++     + +H   +R  LD ++ +  ALIDMYAKCG +
Sbjct: 355 QLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRV 414

Query: 366 SDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTAC 425
           + ++ +F+   +R ++TW +M+ GYG+HG GK A+ELF+EM   G+ P+   F++VL+AC
Sbjct: 415 NIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSAC 474

Query: 426 SHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESV 484
           SHAGLVDEG +YF SM  DY + P  E YG +VDLLGRAG++ EA+  I+ MP  P  SV
Sbjct: 475 SHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSV 534

Query: 485 WGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544
           +G +LGACK H+   L + +A ++ +L P     +++L+NIYA    W++ A+ R  M  
Sbjct: 535 YGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEK 594

Query: 545 MGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHD 604
            G +K  G S I++++++  F +        + +Y  L  LI  +    Y PD D  IHD
Sbjct: 595 NGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDS-IHD 653

Query: 605 LEGET 609
           +E + 
Sbjct: 654 VEDDV 658



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 122/446 (27%), Positives = 205/446 (45%), Gaps = 43/446 (9%)

Query: 96  AWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMD 155
           A   FV M      P   T +S+LK C     L+    VH      G++       +L +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 156 VYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPY 215
           +YA C    D AR VF+ M  ++ V+W  L+ GYA +G     + +   M  E  E  P 
Sbjct: 103 MYAKCRRPAD-ARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGE-RPD 160

Query: 216 SFSI--AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFD 273
           S ++   + ACA+   ++  +  HA  I+ G    + V  +ILD YC+   +  A   FD
Sbjct: 161 SITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFD 220

Query: 274 EMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSC 332
            M  K+ ++WN +I GY ++G S E L +F++M  E       +  + + AC  L  L  
Sbjct: 221 WMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDE 280

Query: 333 GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA 392
           G +VH  +VR GLD N+++ NALI MY+KC  +  +  +F E+  R  V+W +M++G   
Sbjct: 281 GMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQ 340

Query: 393 HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEI 452
           +G  ++A+ LF  M    V+PD    ++V+ A   A + D     +       ++ ++++
Sbjct: 341 NGCSEDAVRLFTRMQLENVKPDSFTLVSVIPAL--ADISDPLQARWIHGYSIRLHLDQDV 398

Query: 453 Y--GCVVDLLGRAGRVK----------------------------------EAYELIKSM 476
           Y    ++D+  + GRV                                   E +E +KS+
Sbjct: 399 YVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSI 458

Query: 477 PFKPDESVWGPLLGACKEHRLPNLGK 502
              P+E+ +  +L AC    L + G+
Sbjct: 459 GIVPNETTFLSVLSACSHAGLVDEGR 484


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/605 (35%), Positives = 340/605 (56%), Gaps = 16/605 (2%)

Query: 19  PPIIKQSLQSVKKSSIQSD--------PPLIPKG---PSILATNLIKSYFDEGLIEEART 67
           PP+++     +K  + + D          L  +G    ++ AT L   Y       +AR 
Sbjct: 56  PPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARR 115

Query: 68  LFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE-VNPNAFTLSSVLKACKGMK 126
           +FD MP RD V+W  ++AGY        A  + V M   E   P++ TL SVL AC   +
Sbjct: 116 VFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANAR 175

Query: 127 SLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLI 186
           +L+     H  AI+ GLE  + V  +++D Y  C   +  AR+VF+ M  KN VSW  +I
Sbjct: 176 ALAACREAHAFAIRSGLEELVNVATAILDAYCKCG-DIRAARVVFDWMPTKNSVSWNAMI 234

Query: 187 TGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFG 246
            GYA +G+    L +F  M+ EGV++   S   A++AC   G +  G  +H  +++ G  
Sbjct: 235 DGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLD 294

Query: 247 SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKM 305
           SN+ VMN+++ MY +   +  A+  FDE+  +  ++WN +I G  ++G SE  + +F++M
Sbjct: 295 SNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRM 354

Query: 306 KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNI 365
           + E   P+ FT  S+I A A ++     + +H   +R  LD ++ +  ALIDMYAKCG +
Sbjct: 355 QLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRV 414

Query: 366 SDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTAC 425
           + ++ +F+   +R ++TW +M+ GYG+HG GK A+ELF+EM   G+ P+   F++VL+AC
Sbjct: 415 NIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSAC 474

Query: 426 SHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESV 484
           SHAGLVDEG +YF SM  DY + P  E YG +VDLLGRAG++ EA+  I+ MP  P  SV
Sbjct: 475 SHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSV 534

Query: 485 WGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544
           +G +LGACK H+   L + +A ++ +L P     +++L+NIYA    W++ A+ R  M  
Sbjct: 535 YGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEK 594

Query: 545 MGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHD 604
            G +K  G S I++++++  F +        + +Y  L  LI  +    Y PD D  IHD
Sbjct: 595 NGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDS-IHD 653

Query: 605 LEGET 609
           +E + 
Sbjct: 654 VEDDV 658



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 122/446 (27%), Positives = 205/446 (45%), Gaps = 43/446 (9%)

Query: 96  AWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMD 155
           A   FV M      P   T +S+LK C     L+    VH      G++       +L +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 156 VYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPY 215
           +YA C    D AR VF+ M  ++ V+W  L+ GYA +G     + +   M  E  E  P 
Sbjct: 103 MYAKCRRPAD-ARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGE-RPD 160

Query: 216 SFSI--AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFD 273
           S ++   + ACA+   ++  +  HA  I+ G    + V  +ILD YC+   +  A   FD
Sbjct: 161 SITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFD 220

Query: 274 EMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSC 332
            M  K+ ++WN +I GY ++G S E L +F++M  E       +  + + AC  L  L  
Sbjct: 221 WMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDE 280

Query: 333 GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA 392
           G +VH  +VR GLD N+++ NALI MY+KC  +  +  +F E+  R  V+W +M++G   
Sbjct: 281 GMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQ 340

Query: 393 HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEI 452
           +G  ++A+ LF  M    V+PD    ++V+ A   A + D     +       ++ ++++
Sbjct: 341 NGCSEDAVRLFTRMQLENVKPDSFTLVSVIPAL--ADISDPLQARWIHGYSIRLHLDQDV 398

Query: 453 Y--GCVVDLLGRAGRVK----------------------------------EAYELIKSM 476
           Y    ++D+  + GRV                                   E +E +KS+
Sbjct: 399 YVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSI 458

Query: 477 PFKPDESVWGPLLGACKEHRLPNLGK 502
              P+E+ +  +L AC    L + G+
Sbjct: 459 GIVPNETTFLSVLSACSHAGLVDEGR 484



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 72/136 (52%), Gaps = 1/136 (0%)

Query: 288 AGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           A   +S     L  F  M S    P   TFTS++  CA    L+ G+ VHA +  RG+D 
Sbjct: 33  ASAARSDLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDS 92

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
               A AL +MYAKC   +D++++F  M  RD V W +++ GY  +G  + A+E+   M 
Sbjct: 93  EALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQ 152

Query: 408 -KSGVRPDRIVFMAVL 422
            + G RPD I  ++VL
Sbjct: 153 EEEGERPDSITLVSVL 168


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/565 (36%), Positives = 327/565 (57%), Gaps = 3/565 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + + T LI +Y   G +  AR +FDE+  +D+VSWT MIA Y   +C ++A   F +M  
Sbjct: 81  TFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAENDCFSEALEFFSQMRV 140

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
               PN FT + VLKAC G+++      VH   +K   E  +YV   L+++Y T C   D
Sbjct: 141 AGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELY-TRCGDND 199

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +A   F DM   + + W+ +I+ +A SG     L +F +M    V  N ++FS  ++A A
Sbjct: 200 DAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASA 259

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               +   K IH   +K G  +++ V N+++  Y +  C+  + + F+ +++++ ++WNT
Sbjct: 260 DIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNT 319

Query: 286 IIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           II  Y + G  E  L++FS M   +      T++SI+ ACATLAAL  G QVH    +  
Sbjct: 320 IIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTI 379

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
              ++A+ NALIDMYAKCG+I D++ +F  +  RD V+W +++ GY  HG G EAI++F+
Sbjct: 380 YGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFN 439

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRA 463
            M ++  +PD + F+ VL+ACS+ G +DEG +YF SM  DY + P  E Y C+V L+GR+
Sbjct: 440 LMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRS 499

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G + +A + I+ +PF+P   +W  LLGAC  H    LG+++A RVL+L+P    ++++LS
Sbjct: 500 GNLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRISAQRVLELEPRDEASHVLLS 559

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           NIYA   +W   A  RK M+  G KKE G+SWIE +  V  F   D   +  + + G+LE
Sbjct: 560 NIYARARRWGNVAYVRKHMKRKGVKKEPGLSWIENQGNVHCFTVADTSHADLKLINGMLE 619

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGE 608
            L     +  Y P ++ ++ D+E +
Sbjct: 620 FLNMKTRKAGYSPQLNAVLLDVEDD 644



 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 126/432 (29%), Positives = 230/432 (53%), Gaps = 5/432 (1%)

Query: 68  LFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKS 127
           +FDEMPER+ VS+  +I GY   N   +A+ +F  +       N F  ++VLK    M+ 
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 128 LSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNARLVFNDMKWKNDVSWTTLI 186
                +VHG  +K G   + ++  +L+D Y+   C+SM  AR VF+++  K+ VSWT +I
Sbjct: 62  AELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSM--AREVFDEISSKDMVSWTGMI 119

Query: 187 TGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFG 246
             YA +      L  F +M + G + N ++F+  ++AC        GK +H +V+K  + 
Sbjct: 120 ASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYE 179

Query: 247 SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKM 305
            +L V   +L++Y R     DA + F +M + D+I W+ +I+ + +SG SE  L +F +M
Sbjct: 180 RDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQM 239

Query: 306 KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNI 365
           +     PN FTF+S++ A A + +L   + +H   ++ GL  ++ ++NAL+  YAKCG I
Sbjct: 240 RRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCI 299

Query: 366 SDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTAC 425
             S ++F  +SDR+ V+W ++++ Y   G G+ A+ LF  M++  V+   + + ++L AC
Sbjct: 300 EQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRAC 359

Query: 426 SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVW 485
           +    ++ GL+            +  +   ++D+  + G +K+A  +   +  + D+  W
Sbjct: 360 ATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLR-DKVSW 418

Query: 486 GPLLGACKEHRL 497
             ++     H L
Sbjct: 419 NAIICGYSMHGL 430



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 174/322 (54%), Gaps = 2/322 (0%)

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
           +VF++M  +N VS+ TLI GYA S        +F  +  EG E+NP+ F+  ++   S  
Sbjct: 1   MVFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSME 60

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
           W   G+++H  V+K G+GSN  +  +++D Y    C+S A + FDE++ KD+++W  +IA
Sbjct: 61  WAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIA 120

Query: 289 GY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
            Y E    SE L  FS+M+   F PN FTF  ++ AC  L     G+ VH  +++   + 
Sbjct: 121 SYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYER 180

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           +L +   L+++Y +CG+  D+ + F +M   D++ W+ M+  +   G  ++A+E+F +M 
Sbjct: 181 DLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMR 240

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
           ++ V P++  F +VL A +    +D             ++ +  +   ++    + G ++
Sbjct: 241 RAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIE 300

Query: 468 EAYELIKSMPFKPDESVWGPLL 489
           ++ EL +++  + D S W  ++
Sbjct: 301 QSMELFEALSDRNDVS-WNTII 321


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/564 (34%), Positives = 319/564 (56%), Gaps = 3/564 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I+  +L+  Y   G +E A  +F+     +VV W +M+  +   N   +++ +F +M   
Sbjct: 280 IMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAA 339

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + PN FT   +L+ C   + +     +H +++K G E  +YV   L+D+Y+     ++ 
Sbjct: 340 GIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGW-LEK 398

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR V   +K K+ VSWT++I GY         L  FKEM   G+  +    + A+  CA 
Sbjct: 399 ARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAG 458

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  G  IHA +   G+  ++ + N+++++Y R   + +A   F+E+  KD ITWN +
Sbjct: 459 INAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGL 518

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           ++G+ +SG   E L +F +M       N FTF S ++A A LA +  G+Q+HA +++ G 
Sbjct: 519 VSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGH 578

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
                + NALI +Y KCG+  D++  FSEMS+R+ V+W +++     HG G EA++LFD+
Sbjct: 579 SFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQ 638

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAG 464
           M K G++P+ + F+ VL ACSH GLV+EGL YFKSM+D Y + P  + Y CV+D+ GRAG
Sbjct: 639 MKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAG 698

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           ++  A + I+ MP   D  VW  LL ACK H+   +G+ AA  +L+L+P+   +Y++LSN
Sbjct: 699 QLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSN 758

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
            YA   KW    + RK+MR  G +KE G SWIEV++ V  F   D++    + +Y  L +
Sbjct: 759 AYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYNFLAV 818

Query: 585 LIRHMNETAYEPDIDCLIHDLEGE 608
           +   + +  Y+ +   L HD E E
Sbjct: 819 INDRVAKVGYKQEKYHLFHDKEQE 842



 Score =  244 bits (623), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 151/530 (28%), Positives = 266/530 (50%), Gaps = 9/530 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I+   LI  Y   GL+  AR +F+E+  RD VSW  M++GY       +A  ++ +M R 
Sbjct: 78  IVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRA 137

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V P  + LSSVL +C   +  +   L+H    K G    I+V N+++ +Y  C  S   
Sbjct: 138 GVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCG-SFRL 196

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  VF DM  ++ V++ TLI+G+A  G+G   L +F+EM   G+  +  + S  + ACAS
Sbjct: 197 AERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACAS 256

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G +  G  +H+ + K G  S+  +  S+LD+Y +   +  A   F+     +++ WN +
Sbjct: 257 LGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLM 316

Query: 287 IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           +  + +    ++   +F +M++    PN FT+  I+  C     +  G+Q+H+  V+ G 
Sbjct: 317 LVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGF 376

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           + ++ ++  LIDMY+K G +  ++++   + ++D+V+WTSM+ GY  H   K+A+  F E
Sbjct: 377 ESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKE 436

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M K G+ PD I   + ++ C+    + +GL+    +     + +  I+  +V+L  R GR
Sbjct: 437 MQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGR 496

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           ++EA+   + +  K DE  W  L+    +  L        +R +D        +  +S +
Sbjct: 497 IREAFSSFEEIEHK-DEITWNGLVSGFAQSGLHEEALKVFMR-MDQSGVKHNVFTFVSAL 554

Query: 526 YA----AEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKM 571
            A    AE K  +    R I  G   + EVG + I +  K CG   + KM
Sbjct: 555 SASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGK-CGSFEDAKM 603



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 115/426 (26%), Positives = 219/426 (51%), Gaps = 4/426 (0%)

Query: 72  MPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGM-KSLSN 130
           M  R   S    +AG+ +     +  ++F +  R          +  L+AC+G  +    
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGPLDFACALRACRGNGRRWQV 60

Query: 131 AALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYA 190
              +H  A+  GL     V N L+D+Y+   + +  AR VF ++  +++VSW  +++GYA
Sbjct: 61  VPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLP-ARRVFEELSARDNVSWVAMLSGYA 119

Query: 191 HSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLP 250
            +G G   LG++++M   GV   PY  S  + +C      + G+LIHA   KHGF S + 
Sbjct: 120 QNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIF 179

Query: 251 VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSER 309
           V N+++ +Y R      A + F +M  +D +T+NT+I+G+ + G  E  L +F +M+   
Sbjct: 180 VGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSG 239

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
            SP+C T +S++AACA+L  L  G Q+H+ + + G+  +  +  +L+D+Y KCG++  + 
Sbjct: 240 LSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETAL 299

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
            IF+     ++V W  M++ +G      ++ ELF +M  +G+RP++  +  +L  C+   
Sbjct: 300 VIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTR 359

Query: 430 LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
            +D G +            +  + G ++D+  + G +++A  +++ +  K D   W  ++
Sbjct: 360 EIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEK-DVVSWTSMI 418

Query: 490 GACKEH 495
               +H
Sbjct: 419 AGYVQH 424


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/564 (34%), Positives = 319/564 (56%), Gaps = 3/564 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I+  +L+  Y   G +E A  +F+     +VV W +M+  +   N   +++ +F +M   
Sbjct: 280 IMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAA 339

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + PN FT   +L+ C   + +     +H +++K G E  +YV   L+D+Y+     ++ 
Sbjct: 340 GIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGW-LEK 398

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR V   +K K+ VSWT++I GY         L  FKEM   G+  +    + A+  CA 
Sbjct: 399 ARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAG 458

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  G  IHA +   G+  ++ + N+++++Y R   + +A   F+E+  KD ITWN +
Sbjct: 459 INAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGL 518

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           ++G+ +SG   E L +F +M       N FTF S ++A A LA +  G+Q+HA +++ G 
Sbjct: 519 VSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGH 578

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
                + NALI +Y KCG+  D++  FSEMS+R+ V+W +++     HG G EA++LFD+
Sbjct: 579 SFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQ 638

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAG 464
           M K G++P+ + F+ VL ACSH GLV+EGL YFKSM+D Y + P  + Y CV+D+ GRAG
Sbjct: 639 MKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAG 698

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           ++  A + I+ MP   D  VW  LL ACK H+   +G+ AA  +L+L+P+   +Y++LSN
Sbjct: 699 QLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSN 758

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
            YA   KW    + RK+MR  G +KE G SWIEV++ V  F   D++    + +Y  L +
Sbjct: 759 AYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYNFLAV 818

Query: 585 LIRHMNETAYEPDIDCLIHDLEGE 608
           +   + +  Y+ +   L HD E E
Sbjct: 819 INDRVAKVGYKQEKYHLFHDKEQE 842



 Score =  244 bits (623), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 151/530 (28%), Positives = 266/530 (50%), Gaps = 9/530 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I+   LI  Y   GL+  AR +F+E+  RD VSW  M++GY       +A  ++ +M R 
Sbjct: 78  IVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRA 137

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V P  + LSSVL +C   +  +   L+H    K G    I+V N+++ +Y  C  S   
Sbjct: 138 GVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCG-SFRL 196

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  VF DM  ++ V++ TLI+G+A  G+G   L +F+EM   G+  +  + S  + ACAS
Sbjct: 197 AERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACAS 256

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G +  G  +H+ + K G  S+  +  S+LD+Y +   +  A   F+     +++ WN +
Sbjct: 257 LGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLM 316

Query: 287 IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           +  + +    ++   +F +M++    PN FT+  I+  C     +  G+Q+H+  V+ G 
Sbjct: 317 LVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGF 376

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           + ++ ++  LIDMY+K G +  ++++   + ++D+V+WTSM+ GY  H   K+A+  F E
Sbjct: 377 ESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKE 436

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M K G+ PD I   + ++ C+    + +GL+    +     + +  I+  +V+L  R GR
Sbjct: 437 MQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGR 496

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           ++EA+   + +  K DE  W  L+    +  L        +R +D        +  +S +
Sbjct: 497 IREAFSSFEEIEHK-DEITWNGLVSGFAQSGLHEEALKVFMR-MDQSGVKHNVFTFVSAL 554

Query: 526 YA----AEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKM 571
            A    AE K  +    R I  G   + EVG + I +  K CG   + KM
Sbjct: 555 SASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGK-CGSFEDAKM 603



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 115/426 (26%), Positives = 219/426 (51%), Gaps = 4/426 (0%)

Query: 72  MPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGM-KSLSN 130
           M  R   S    +AG+ +     +  ++F +  R          +  L+AC+G  +    
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGPLDFACALRACRGNGRRWQV 60

Query: 131 AALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYA 190
              +H  A+  GL     V N L+D+Y+   + +  AR VF ++  +++VSW  +++GYA
Sbjct: 61  VPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLP-ARRVFEELSARDNVSWVAMLSGYA 119

Query: 191 HSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLP 250
            +G G   LG++++M   GV   PY  S  + +C      + G+LIHA   KHGF S + 
Sbjct: 120 QNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIF 179

Query: 251 VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSER 309
           V N+++ +Y R      A + F +M  +D +T+NT+I+G+ + G  E  L +F +M+   
Sbjct: 180 VGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSG 239

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
            SP+C T +S++AACA+L  L  G Q+H+ + + G+  +  +  +L+D+Y KCG++  + 
Sbjct: 240 LSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETAL 299

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
            IF+     ++V W  M++ +G      ++ ELF +M  +G+RP++  +  +L  C+   
Sbjct: 300 VIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTR 359

Query: 430 LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
            +D G +            +  + G ++D+  + G +++A  +++ +  K D   W  ++
Sbjct: 360 EIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEK-DVVSWTSMI 418

Query: 490 GACKEH 495
               +H
Sbjct: 419 AGYVQH 424


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 230/646 (35%), Positives = 347/646 (53%), Gaps = 80/646 (12%)

Query: 43  KGPSILA-TNLIKSYFDEGLIEEARTLFDEMPE--RDVVSWTVMIAGYTSFNCHNQAWTV 99
           + P I+A T LI ++   G    AR +F   P   RD V +  MI GY+  N    A  +
Sbjct: 77  RQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIEL 136

Query: 100 FVEMVRNEVNPNAFTLSSVLKACKGM-KSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA 158
           F +++RN   P+ FT +SVL A   + +       +H   +K G      V N+L+ V+ 
Sbjct: 137 FRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFV 196

Query: 159 TCCIS--------MDNARLVFNDMKWKNDVSWTTLITGYAHSG----------------- 193
            C  S        M  AR +F++M  ++++SWTT+I GY  +G                 
Sbjct: 197 KCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLV 256

Query: 194 -------NGY-------GGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAA 239
                  +GY         L +F++M L G++ + ++++  + ACA+ G+   GK +HA 
Sbjct: 257 VAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAY 316

Query: 240 VIKH----GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG- 294
           +++         +L V N++  +Y +   + +A Q F++M  KDL++WN I++GY  +G 
Sbjct: 317 ILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGR 376

Query: 295 -------------------------------SSECLNMFSKMKSERFSPNCFTFTSIIAA 323
                                            E L +F++MKSE F P  + F   I A
Sbjct: 377 IDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIA 436

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTW 383
           CA LAAL  G+Q+HA +VR G D +L+  NALI MYAKCG +  +  +F  M   D V+W
Sbjct: 437 CAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSW 496

Query: 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND 443
            +M+   G HGHG +A+ELF+ M+K  + PDRI F+ VL+ CSHAGLV+EG +YFKSM+ 
Sbjct: 497 NAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSG 556

Query: 444 -YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGK 502
            Y + P ++ Y  ++DLL RAG+  EA ++I++MP +P   +W  LL  C+ H   +LG 
Sbjct: 557 LYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGI 616

Query: 503 LAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKV 562
            AA R+ +L P   GTY++LSN+YA  G+W++ AK RK+MR  G KKE G SWIEV +KV
Sbjct: 617 QAAERLFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEVENKV 676

Query: 563 CGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
             F+ +D +    Q VY  LE L   M +  Y PD   ++HD+E E
Sbjct: 677 HVFLVDDIVHPEVQAVYNYLEELGLKMRKLGYIPDTKFVLHDMESE 722



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 136/535 (25%), Positives = 231/535 (43%), Gaps = 123/535 (22%)

Query: 127 SLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD--NARLVFNDMKWKNDVSWTT 184
           S S A  VH   I  G +   Y+ N L+DVY   C S D  +A  +F++++  + V+ TT
Sbjct: 30  SYSIARTVHAHMIASGFKPRGYILNRLIDVY---CKSSDLVSAHHLFDEIRQPDIVARTT 86

Query: 185 LI---------------------------------TGYAHSGNGYGGLGVFKEMLLEGVE 211
           LI                                 TGY+H+ +G+G + +F+++L  G  
Sbjct: 87  LIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFR 146

Query: 212 MNPYSFSIAVRACASTGWVSFGKL---IHAAVIKHGFGSNLPVMNSILDMYCR------- 261
            + ++F+  + A A    V   K    IH AV+K G G    V+N++L ++ +       
Sbjct: 147 PDNFTFTSVLGALALI--VEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLV 204

Query: 262 --FDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS------------------------ 295
                ++ A + FDEMTE+D ++W T+IAGY ++G                         
Sbjct: 205 SSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMIS 264

Query: 296 --------SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR---- 343
                    E L MF KM       + FT+TS+++ACA       G+QVHA I+R     
Sbjct: 265 GYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRP 324

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFS------------------------------ 373
            LD +L++ NAL  +Y KCG + +++++F+                              
Sbjct: 325 SLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFF 384

Query: 374 -EMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD 432
            EM +R+L+TWT M+ G   +G G+E+++LF+ M   G  P    F   + AC+    + 
Sbjct: 385 EEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALM 444

Query: 433 EGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGAC 492
            G +    +     + +      ++ +  + G V+ A+ L  +MP+  D   W  ++ A 
Sbjct: 445 HGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYL-DSVSWNAMIAAL 503

Query: 493 KE--HRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545
            +  H    L     +   D+ P+ +    +LS    A G  EE  ++ K M G+
Sbjct: 504 GQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHA-GLVEEGHRYFKSMSGL 557



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 153/357 (42%), Gaps = 95/357 (26%)

Query: 213 NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYF 272
           NP S+SIA             + +HA +I  GF     ++N ++D+YC+   L  A+  F
Sbjct: 27  NPMSYSIA-------------RTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLF 73

Query: 273 DEMTEKDLITWNTIIAGYEKSGSSE-----------------CLN--------------- 300
           DE+ + D++   T+IA +  +G+S                  C N               
Sbjct: 74  DEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGA 133

Query: 301 --MFSKMKSERFSPNCFTFTSIIAACATLA--ALSCGQQVHAGIVRRGLDGNLALANALI 356
             +F  +    F P+ FTFTS++ A A +      C QQ+H  +V+ G     ++ NAL+
Sbjct: 134 IELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQC-QQIHCAVVKSGSGFVTSVLNALL 192

Query: 357 DMYAKCG---------NISDSQKIFSEMSDRDLVTWTSMMIGYGA--------------- 392
            ++ KC           ++ ++K+F EM++RD ++WT+M+ GY                 
Sbjct: 193 SVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMT 252

Query: 393 ----------------HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
                           HG   EA+E+F +M   G++ D   + +VL+AC++AG    G +
Sbjct: 253 EKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQ 312

Query: 437 YFKSMNDYNVNPNKE----IYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
               +      P+ +    +   +  L  + G+V EA ++   MP K D   W  +L
Sbjct: 313 VHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVK-DLVSWNAIL 368


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 218/648 (33%), Positives = 353/648 (54%), Gaps = 79/648 (12%)

Query: 34  IQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMP--ERDVVSWTVMIAGYTSFN 91
            +SDP     GP + AT+L+ ++   G + +A   FD +P   RD V    M++ +   +
Sbjct: 86  FRSDPD---PGP-VAATSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARAS 141

Query: 92  CHNQAWTVFVEMV-RNEVNPNAFTLSSVLKACKGMKSLS--NAALVHGMAIKEGLEGSIY 148
               A +VF  ++    + P+ ++ ++++ A   M +L+  +   +H   +K G    + 
Sbjct: 142 LAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLS 201

Query: 149 VENSLMDVYATCCISMD--NARLVFNDMKWKNDVSWTTLITGYAHSGN------------ 194
           V N+L+ +Y  C       +AR V ++M  K+D++WTT++ GY   G+            
Sbjct: 202 VSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVD 261

Query: 195 ------------GYGGLG-------VFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKL 235
                       GY   G       +F+ M+ E V ++ ++F+  + ACA+ G+   GK 
Sbjct: 262 GKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKS 321

Query: 236 IHAAVIKHGFG----SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
           +H  +I+        + LPV N+++ +Y +   +  A + FD M  KD+++WNTI++GY 
Sbjct: 322 VHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYI 381

Query: 292 KSG--------------------------------SSECLNMFSKMKSERFSPNCFTFTS 319
            SG                                S + L +F++M++E   P  +T+  
Sbjct: 382 DSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAG 441

Query: 320 IIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD 379
            IAAC  L AL  G+Q+HA +V+ G + + +  NAL+ MYAKCG ++D++ +F  M + D
Sbjct: 442 AIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLD 501

Query: 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439
            V+W +M+   G HGHG+EA+ELFD+MV  G+ PDRI F+ +LTAC+HAGLVDEG  YF+
Sbjct: 502 SVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFE 561

Query: 440 SM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLP 498
           SM  D+ ++P ++ Y  ++DLLGR+GR+ EA +LIK+MPF+P  S+W  +L  C+ +   
Sbjct: 562 SMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDM 621

Query: 499 NLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEV 558
             G  AA ++  + P   GTYI+LSN Y+A G+W + A+ RK+MR  G KKE G SWIEV
Sbjct: 622 EFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEV 681

Query: 559 RDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
             K+  F+  D      Q VY  LE++   M +  Y PD   ++HD+E
Sbjct: 682 GSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPDTKFVLHDME 729


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/547 (36%), Positives = 322/547 (58%), Gaps = 4/547 (0%)

Query: 52   LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
            LI  Y    +I +A  +F+ MP +D +SW  +I+G +S   +++A  +F+ M       +
Sbjct: 458  LISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELD 517

Query: 112  AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
            + TL SVL AC   +      +VHG ++K GL G   + N+L+D+Y+ C     +   +F
Sbjct: 518  SVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCS-DWQSTNQIF 576

Query: 172  NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
              M  KN VSWT +IT Y  +G      G+ +EM+L+G+  + ++ + A+ A A    + 
Sbjct: 577  RSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLK 636

Query: 232  FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
             GK +H   I++G    LPV N++++MY +   + +A   FD +T KD+I+WNT+I GY 
Sbjct: 637  QGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYS 696

Query: 292  KSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
            ++   +E  ++FS M  + F PN  T T I+ A A++++L  G+++HA  +RRG   +  
Sbjct: 697  RNNFPNESFSLFSDMLLQ-FRPNAVTMTCILPAAASISSLERGREIHAYALRRGFLEDSY 755

Query: 351  LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
             +NAL+DMY KCG +  ++ +F  ++ ++L++WT M+ GYG HG GK AI LF++M  SG
Sbjct: 756  ASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSG 815

Query: 411  VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEA 469
            + PD   F A+L AC H+GL  EG ++FK+M  +Y + P  + Y C+VDLL R G +KEA
Sbjct: 816  IEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEA 875

Query: 470  YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529
             E I+SMP +PD S+W  LL  C+ H+   L +  A +V  L+P   G Y++L+NIYA  
Sbjct: 876  LEFIESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVFKLEPENTGYYVLLANIYAEA 935

Query: 530  GKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHM 589
             +WE   K +  + G G ++  G SWIEVR KV  FIA+++       +   L+ + R M
Sbjct: 936  ERWEAVKKLKNKIGGRGLRENTGYSWIEVRSKVHVFIADNRNHPDWNRIAEFLDDVARRM 995

Query: 590  NETAYEP 596
             +  ++P
Sbjct: 996  RQEGHDP 1002



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 127/423 (30%), Positives = 216/423 (51%), Gaps = 18/423 (4%)

Query: 23  KQSLQSVKKSS--IQSDPPLIPKGP-SILATNLIKSYFDEGLIEEARTLFDEMPER--DV 77
           ++SL++ K++   I++       G  S+L   L+ +Y   G + EART+FD MP +  DV
Sbjct: 110 ERSLEAAKRAHALIRASSAAATGGKGSVLGKRLVLAYLKCGDLGEARTVFDGMPPQAADV 169

Query: 78  VSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGM 137
             WT +++ Y       +A ++F +M    V+P+A  +S VLK    + SL+   ++HG+
Sbjct: 170 RVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSSLGSLTEGEVIHGL 229

Query: 138 AIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYG 197
             K GL  +  V N+L+ VY+ C   M++A  VF+ M  ++ +SW ++I G   +G    
Sbjct: 230 LEKLGLGQACAVANALIAVYSRCG-RMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGT 288

Query: 198 GLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILD 257
            + +F +M  +G E++  +    + ACA  G+   GK +H   +K G    L  + S +D
Sbjct: 289 AVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGID 348

Query: 258 ----------MYCRFDCLSDANQYFDEMTEK-DLITWNTIIAGYEKSGS-SECLNMFSKM 305
                     MY +   ++ A + FD M+ K ++  WN I+ GY K G   E L++F +M
Sbjct: 349 DAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQM 408

Query: 306 KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNI 365
                +P+    + ++     L+    G   H  IV+ G     A+ NALI  YAK   I
Sbjct: 409 HELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMI 468

Query: 366 SDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTAC 425
            D+  +F+ M  +D ++W S++ G  ++G   EAIELF  M   G   D +  ++VL AC
Sbjct: 469 GDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPAC 528

Query: 426 SHA 428
           + +
Sbjct: 529 AQS 531



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 196/383 (51%), Gaps = 7/383 (1%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G + LA  L+  Y +    +    +F  M +++VVSWT MI  Y      ++   +  EM
Sbjct: 551 GETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEM 610

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           V + + P+ F ++S L A  G +SL     VHG  I+ G+E  + V N+LM++Y   C +
Sbjct: 611 VLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVK-CRN 669

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           ++ ARL+F+ +  K+ +SW TLI GY+ +        +F +MLL+    N  + +  + A
Sbjct: 670 VEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQ-FRPNAVTMTCILPA 728

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
            AS   +  G+ IHA  ++ GF  +    N+++DMY +   L  A   FD +T+K+LI+W
Sbjct: 729 AASISSLERGREIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLISW 788

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
             +IAGY   G     + +F +M+     P+  +F++I+ AC      + G++    + +
Sbjct: 789 TIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQK 848

Query: 343 R-GLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEAI 400
              ++  L     ++D+ ++ G++ ++ +    M  + D   W S++ G   H + K A 
Sbjct: 849 EYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLAE 908

Query: 401 ELFDEMVKSGVRPDRIVFMAVLT 423
           ++ D++ K  + P+   +  +L 
Sbjct: 909 KVADKVFK--LEPENTGYYVLLA 929



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 191/399 (47%), Gaps = 22/399 (5%)

Query: 118 VLKACKGMKSLSNAALVHGM-----AIKEGLEGSIYVENSLMDVYATCCISMDNARLVFN 172
           V++ C   +SL  A   H +     A   G +GS+ +   L+  Y  C   +  AR VF+
Sbjct: 103 VVQLCGEERSLEAAKRAHALIRASSAAATGGKGSV-LGKRLVLAYLKCG-DLGEARTVFD 160

Query: 173 DMKWKN-DVS-WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
            M  +  DV  WT+L++ YA +G+    + +F++M   GV  + ++ S  ++  +S G +
Sbjct: 161 GMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSSLGSL 220

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
           + G++IH  + K G G    V N+++ +Y R   + DA + FD M  +D I+WN++I G 
Sbjct: 221 TEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGC 280

Query: 291 EKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
             +G     +++FSKM S+    +  T  S++ ACA L     G+ VH   V+ GL   L
Sbjct: 281 FSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGL 340

Query: 350 ----------ALANALIDMYAKCGNISDSQKIFSEMSDRDLV-TWTSMMIGYGAHGHGKE 398
                     AL + L+ MY KCG+++ ++++F  MS +  V  W  +M GY   G  +E
Sbjct: 341 DSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEE 400

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVD 458
           ++ LF +M + G+ PD      +L   +      +GL     +          +   ++ 
Sbjct: 401 SLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALIS 460

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
              ++  + +A  +   MP + D   W  ++  C  + L
Sbjct: 461 FYAKSNMIGDAVLVFNRMP-RQDTISWNSVISGCSSNGL 498



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 114/223 (51%), Gaps = 11/223 (4%)

Query: 216 SFSIAVRACASTGWVSFGKLIHA------AVIKHGFGSNLPVMNSILDMYCRFDCLSDAN 269
           S+ + V+ C     +   K  HA      A    G GS L     ++  Y +   L +A 
Sbjct: 99  SYCMVVQLCGEERSLEAAKRAHALIRASSAAATGGKGSVLG--KRLVLAYLKCGDLGEAR 156

Query: 270 QYFDEMTEK--DLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACAT 326
             FD M  +  D+  W ++++ Y K+G   E +++F +M+    SP+    + ++   ++
Sbjct: 157 TVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSS 216

Query: 327 LAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSM 386
           L +L+ G+ +H  + + GL    A+ANALI +Y++CG + D+ ++F  M  RD ++W SM
Sbjct: 217 LGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSM 276

Query: 387 MIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
           + G  ++G    A++LF +M   G     +  ++VL AC+  G
Sbjct: 277 IGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLG 319


>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/554 (36%), Positives = 324/554 (58%), Gaps = 7/554 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + ++L+  Y   GL+ EAR +FD MPER+ V+W  MI+GY       +A+ VF  M R 
Sbjct: 147 FVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMRRE 206

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           E + N F  +SVL A    + + +   +H +A+K GL   + + N+L+ +YA C  S+D+
Sbjct: 207 EEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCG-SLDD 265

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA--VRAC 224
           +  VF     KN ++W+ +ITGYA SG+ +  L +F  M   G+  NP  F++   + AC
Sbjct: 266 SLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGI--NPSEFTLVGVLNAC 323

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           +    V  GK +H  ++K GF S L +M +++DMY +     DA + F+ + + DL+ W 
Sbjct: 324 SDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWT 383

Query: 285 TIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           ++IAGY ++G +E  L+++ +M+ E   PN  T  S++ AC+ LAA   G+Q+HA  ++ 
Sbjct: 384 SMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQIHARTIKY 443

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           GL   + + +AL  MYAKCGN+ +   +F  M +RD+++W +M+ G   +G+GKEA+ELF
Sbjct: 444 GLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMPERDIISWNAMISGLSQNGYGKEALELF 503

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGR 462
           +EM +   +PD + F+ VL+ACSH GLVD G  YF+ M D + + P  E Y C+VD+L R
Sbjct: 504 EEMRQQDTKPDDVTFVNVLSACSHMGLVDSGWLYFRMMFDEFGLLPKVEHYACMVDVLSR 563

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AG++ EA E I+S        +W  LLGAC+ +R   LG  A  ++++L       Y++L
Sbjct: 564 AGKLYEAKEFIESTTIDHGLCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYVLL 623

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           S IY A G+ E+  + R +M+  G  KE G SWIE++  V  F+  D+M      +   +
Sbjct: 624 SGIYTALGRPEDVERVRSMMKVRGVSKEPGCSWIELKSNVHVFVVGDQMHPCIGEIRTEI 683

Query: 583 EMLIRHMNETAYEP 596
             L + M +  Y+P
Sbjct: 684 LRLSKQMKDEGYQP 697



 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 140/472 (29%), Positives = 243/472 (51%), Gaps = 7/472 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWT--VFVEMVR 105
           LA +LI  Y     + +A+ +FD +  +DV+SW  +I GY+       ++   +F  M  
Sbjct: 45  LANSLINFYAKCCHLPKAKLVFDRIHNKDVISWNCLINGYSQQGPTGSSFVMELFQRMRA 104

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           + + PNA T S +  A   + S+      H +AIK      ++V +SL+++Y    +  +
Sbjct: 105 DNILPNAHTFSGIFTAASNLSSIFFGQQAHAVAIKMACFYDVFVGSSLLNMYCKAGLLFE 164

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            AR VF+ M  +N+V+W T+I+GYA          VF+ M  E  ++N ++F+  + A A
Sbjct: 165 -AREVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVLSALA 223

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
              +V  GK IH   +K G    L ++N+++ MY +   L D+ Q F+   +K+ ITW+ 
Sbjct: 224 VPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLDDSLQVFEMSNDKNSITWSA 283

Query: 286 IIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I GY +SG S + L +FS+M     +P+ FT   ++ AC+   A+  G+QVH  +++ G
Sbjct: 284 MITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAVEEGKQVHNYLLKLG 343

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
            +  L +  AL+DMYAK G   D++K F+ +   DLV WTSM+ GY  +G  ++A+ L+ 
Sbjct: 344 FESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGENEDALSLYC 403

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
            M   G+ P+ +   +VL ACS+    D+G +       Y +     I   +  +  + G
Sbjct: 404 RMQMEGILPNELTMASVLKACSNLAAFDQGRQIHARTIKYGLGLEVTIGSALSTMYAKCG 463

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPN 514
            ++E   + + MP + D   W  ++    ++      L     +R  D KP+
Sbjct: 464 NLEEGNIVFRRMP-ERDIISWNAMISGLSQNGYGKEALELFEEMRQQDTKPD 514



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 118/369 (31%), Positives = 199/369 (53%), Gaps = 6/369 (1%)

Query: 126 KSLSNAALVHGMAIKEGLEGS-IYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTT 184
           KSL     +H   IK     S IY+ NSL++ YA CC  +  A+LVF+ +  K+ +SW  
Sbjct: 21  KSLQKGRALHAQIIKLASSSSCIYLANSLINFYAKCC-HLPKAKLVFDRIHNKDVISWNC 79

Query: 185 LITGYAHSGNGYGG--LGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIK 242
           LI GY+  G       + +F+ M  + +  N ++FS    A ++   + FG+  HA  IK
Sbjct: 80  LINGYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAASNLSSIFFGQQAHAVAIK 139

Query: 243 HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE-KSGSSECLNM 301
                ++ V +S+L+MYC+   L +A + FD M E++ +TW T+I+GY  +  + E   +
Sbjct: 140 MACFYDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFEV 199

Query: 302 FSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK 361
           F  M+ E    N F FTS+++A A    +  G+Q+H   V+ GL   L++ NAL+ MYAK
Sbjct: 200 FELMRREEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAK 259

Query: 362 CGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAV 421
           CG++ DS ++F   +D++ +TW++M+ GY   G   +A++LF  M  +G+ P     + V
Sbjct: 260 CGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGV 319

Query: 422 LTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481
           L ACS A  V+EG +    +          I   +VD+  ++G  ++A +    +  +PD
Sbjct: 320 LNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQ-QPD 378

Query: 482 ESVWGPLLG 490
             +W  ++ 
Sbjct: 379 LVLWTSMIA 387



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 165/348 (47%), Gaps = 47/348 (13%)

Query: 233 GKLIHAAVIKHGFGSN-LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
           G+ +HA +IK    S+ + + NS+++ Y +   L  A   FD +  KD+I+WN +I GY 
Sbjct: 26  GRALHAQIIKLASSSSCIYLANSLINFYAKCCHLPKAKLVFDRIHNKDVISWNCLINGYS 85

Query: 292 K---SGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           +   +GSS  + +F +M+++   PN  TF+ I  A + L+++  GQQ HA  ++     +
Sbjct: 86  QQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAASNLSSIFFGQQAHAVAIKMACFYD 145

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD---- 404
           + + ++L++MY K G + +++++F  M +R+ VTW +M+ GY       EA E+F+    
Sbjct: 146 VFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMRR 205

Query: 405 --------------------EMVKSG-------VRPDRIVFMAVLTAC----SHAGLVDE 433
                               E V SG       V+   +VF+++L A     +  G +D+
Sbjct: 206 EEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLDD 265

Query: 434 GLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPF---KPDESVWGPLLG 490
            L+ F+  ND     N   +  ++    ++G   +A +L   M F    P E     +L 
Sbjct: 266 SLQVFEMSND----KNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLN 321

Query: 491 ACKEHRLPNLGKLAALRVLDLK-PNMMGTYIILSNIYAAEGKWEEFAK 537
           AC +      GK     +L L   + +     L ++YA  G  E+  K
Sbjct: 322 ACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARK 369


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/565 (34%), Positives = 322/565 (56%), Gaps = 4/565 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            L T LI +    G I  AR +FD++P   V  W  +I GY+  N    A  ++ +M   
Sbjct: 54  FLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLA 113

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V+P++FT   +LKAC G+  L     VH    + G E  ++V+N L+ +YA C   +  
Sbjct: 114 RVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKC-RRLGC 172

Query: 167 ARLVFNDMKW--KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           AR VF  +    +  VSWT +++ YA +G     L +F +M    V+ +  +    + A 
Sbjct: 173 ARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAF 232

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
                +  G+ IHA+V+K G  +   ++ S+  MY +   ++ A   FD+M   +LI WN
Sbjct: 233 TCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWN 292

Query: 285 TIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +I+GY K+G + + +++F +M ++   P+  + TS I+ACA + +L   + +   + R 
Sbjct: 293 AMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRS 352

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
               ++ +++ALIDM+AKCG++  ++ +F    DRD+V W++M++GYG HG  +EAI L+
Sbjct: 353 DYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLY 412

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
             M + GV P+ + F+ +L AC+H+G+V EG  +F  M D+ +NP ++ Y C++DLLGRA
Sbjct: 413 RAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMADHKINPQQQHYACIIDLLGRA 472

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G + +AYE+IK MP +P  +VWG LL ACK+HR   LGK AA ++  + P+  G Y+ LS
Sbjct: 473 GHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGKYAAQQLFSIDPSNTGHYVQLS 532

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           N+YAA   W+  A+ R  M+  G  K+VG SW+EVR ++ GF   DK     + +   +E
Sbjct: 533 NLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEGFRVGDKSHPRYEEIERQVE 592

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGE 608
            +   + E  +  + D  +HDL  E
Sbjct: 593 WIESRLKEGGFVANKDASLHDLNDE 617



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 135/259 (52%), Gaps = 4/259 (1%)

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
           + IHA ++  G   +  ++  ++     +  ++ A Q FD++    +  WN II GY ++
Sbjct: 38  RQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRN 97

Query: 294 GS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
               + L M+SKM+  R SP+ FTF  ++ AC  L+ L  G+ VHA + R G + ++ + 
Sbjct: 98  NHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQ 157

Query: 353 NALIDMYAKCGNISDSQKIFS--EMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           N LI +YAKC  +  ++ +F    + +R +V+WT+++  Y  +G   EA+E+F +M K  
Sbjct: 158 NGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMD 217

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470
           V+PD +  ++VL A +    +++G     S+    +    ++   +  +  + G+V  A 
Sbjct: 218 VKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAK 277

Query: 471 ELIKSMPFKPDESVWGPLL 489
            L   M   P+  +W  ++
Sbjct: 278 ILFDKMK-SPNLILWNAMI 295



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/213 (21%), Positives = 103/213 (48%), Gaps = 12/213 (5%)

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           + S+I +    A L   +Q+HA ++  GL  +  L   LI   +  G+I+ ++++F ++ 
Sbjct: 24  YASLIDSSTHKAQL---RQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLP 80

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
              +  W +++ GY  + H ++A+ ++ +M  + V PD   F  +L AC   GL    + 
Sbjct: 81  RPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKAC--GGLSHLQMG 138

Query: 437 YFKSMNDYNVNPNKEIY--GCVVDLLGRAGRVKEAYELIKSMPFKPDESV--WGPLLGAC 492
            F     + +    +++    ++ L  +  R+  A  + + +P  P+ ++  W  ++ A 
Sbjct: 139 RFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPL-PERTIVSWTAIVSAY 197

Query: 493 KEHRLP--NLGKLAALRVLDLKPNMMGTYIILS 523
            ++  P   L   + +R +D+KP+ +    +L+
Sbjct: 198 AQNGEPVEALEIFSQMRKMDVKPDCVALVSVLN 230


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 221/639 (34%), Positives = 339/639 (53%), Gaps = 72/639 (11%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMP--ERDVVSWTVMIAGYTSFNCHNQAWT 98
           I +   I  T ++  Y   G I  AR +F++ P   RD V +  MI G++  N    A  
Sbjct: 75  ISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAIN 134

Query: 99  VFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAAL-VHGMAIKEGLEGSIYVENSLMDVY 157
           +F +M      P+ FT +SVL     +       +  H  A+K G      V N+L+ VY
Sbjct: 135 LFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVY 194

Query: 158 ATCCIS---MDNARLVFNDMKWKNDVSWTTLITGYAHSG--------------------- 193
           + C  S   + +AR VF+++  K++ SWTT++TGY  +G                     
Sbjct: 195 SKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAY 254

Query: 194 ----NGYGGLGVFKE-------MLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIK 242
               +GY   G ++E       M+  G+E++ +++   +RACA+ G +  GK +HA V++
Sbjct: 255 NAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLR 314

Query: 243 HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-------- 294
               S     NS++ +Y +     +A   F++M  KDL++WN +++GY  SG        
Sbjct: 315 REDFS-FHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLI 373

Query: 295 ------------------------SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAAL 330
                                     E L +FS MK E F P  + F+  I +CA L A 
Sbjct: 374 FKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAY 433

Query: 331 SCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY 390
             GQQ HA +++ G D +L+  NALI MYAKCG + +++++F  M   D V+W +++   
Sbjct: 434 CNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAAL 493

Query: 391 GAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPN 449
           G HGHG EA+++++EM+K G+RPDRI  + VLTACSHAGLVD+G KYF SM   Y + P 
Sbjct: 494 GQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPG 553

Query: 450 KEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVL 509
            + Y  ++DLL R+G+  +A  +I+S+PFKP   +W  LL  C+ H    LG +AA ++ 
Sbjct: 554 ADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLF 613

Query: 510 DLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIAND 569
            L P   GTY++LSN++AA G+WEE A+ RK+MR  G KKEV  SWIE+  +V  F+ +D
Sbjct: 614 GLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDD 673

Query: 570 KMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
                 + VY  L+ L + M    Y PD   ++HD+E +
Sbjct: 674 TSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESD 712



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 120/485 (24%), Positives = 206/485 (42%), Gaps = 115/485 (23%)

Query: 119 LKACKGMK--SLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW 176
           L+ C  ++  SL  A  VHG  I  G +   ++ N L+DVY      ++ AR +F+++  
Sbjct: 19  LRLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSS-ELNYARQLFDEISE 77

Query: 177 KNDVSWTT---------------------------------LITGYAHSGNGYGGLGVFK 203
            + ++ TT                                 +ITG++H+ +GY  + +F 
Sbjct: 78  PDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFC 137

Query: 204 EMLLEGVEMNPYSFS-----IAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDM 258
           +M  EG + + ++F+     +A+ A      V F    HAA +K G G    V N+++ +
Sbjct: 138 KMKHEGFKPDNFTFASVLAGLALVADDEKQCVQF----HAAALKSGAGYITSVSNALVSV 193

Query: 259 YCRF----DCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-------------------- 294
           Y +       L  A + FDE+ EKD  +W T++ GY K+G                    
Sbjct: 194 YSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVA 253

Query: 295 -------------SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
                          E L M  +M S     + FT+ S+I ACAT   L  G+QVHA ++
Sbjct: 254 YNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVL 313

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH------ 395
           RR  D +    N+L+ +Y KCG   +++ IF +M  +DLV+W +++ GY + GH      
Sbjct: 314 RRE-DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKL 372

Query: 396 -------------------------GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
                                    G+E ++LF  M + G  P    F   + +C+  G 
Sbjct: 373 IFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGA 432

Query: 431 VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490
              G +Y   +     + +      ++ +  + G V+EA ++ ++MP   D   W  L+ 
Sbjct: 433 YCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCL-DSVSWNALIA 491

Query: 491 ACKEH 495
           A  +H
Sbjct: 492 ALGQH 496


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/560 (35%), Positives = 318/560 (56%), Gaps = 3/560 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + T L+  Y   G ++ AR +FD + +RDV ++ VMI GY       +A+ +F  M +  
Sbjct: 199 IGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEG 258

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
             PN  +  S+L  C   ++L+    VH   +  GL   + V  +L+ +Y  C  S++ A
Sbjct: 259 FKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCG-SIEGA 317

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R VF+ MK ++ VSWT +I GYA + N     G+F  M  EG++ +  ++   + ACAS+
Sbjct: 318 RRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASS 377

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +S  + IH+ V++ GFG++L V  +++ MY +   + DA Q FD M+ +D+++W+ +I
Sbjct: 378 ADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMI 437

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
             Y ++G   E    F  MK     P+  T+ +++ AC  L AL  G +++   ++  L 
Sbjct: 438 GAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLV 497

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            ++ + NALI+M  K G+I  ++ IF  M  RD+VTW  M+ GY  HG+ +EA++LFD M
Sbjct: 498 SHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRM 557

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGR 465
           +K   RP+ + F+ VL+ACS AG V+EG ++F  + D   + P  E+YGC+VDLLGRAG 
Sbjct: 558 LKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGE 617

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           + EA  LI  MP KP+ S+W  LL AC+ +   ++ + AA R L  +P     Y+ LS++
Sbjct: 618 LDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDVAERAAERCLMSEPYDGAVYVQLSHM 677

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           YAA G WE  AK RK+M   G +KE G +WIEV  K+  F+  D+       +Y  L  L
Sbjct: 678 YAAAGMWENVAKVRKVMESRGVRKEQGCTWIEVEGKLHTFVVEDRSHPQAGEIYAELARL 737

Query: 586 IRHMNETAYEPDIDCLIHDL 605
           +  +    Y P    ++H++
Sbjct: 738 MTAIKREGYIPVTQNVLHNV 757



 Score =  245 bits (625), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 139/447 (31%), Positives = 237/447 (53%), Gaps = 5/447 (1%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
            LIK +   G + EAR  FD +  + VV+W  +IAGY       +A+ +F +MV   + P
Sbjct: 101 TLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEP 160

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           +  T   VL AC     L      H   IK G      +  +L+ +Y     SMD AR V
Sbjct: 161 SIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGG-SMDGARQV 219

Query: 171 FNDMKWKNDVS-WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           F+ + +K DVS +  +I GYA SG+G     +F  M  EG + N  SF   +  C++   
Sbjct: 220 FDGL-YKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEA 278

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           +++GK +HA  +  G   ++ V  +++ MY     +  A + FD+M  +D+++W  +I G
Sbjct: 279 LAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRG 338

Query: 290 Y-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           Y E S   +   +F+ M+ E   P+  T+  II ACA+ A LS  +++H+ +VR G   +
Sbjct: 339 YAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTD 398

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           L +  AL+ MYAKCG I D++++F  MS RD+V+W++M+  Y  +G G+EA E F  M +
Sbjct: 399 LLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKR 458

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKE 468
           + V PD + ++ +L AC H G +D G++ +      ++  +  +   ++++  + G ++ 
Sbjct: 459 NNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIER 518

Query: 469 AYELIKSMPFKPDESVWGPLLGACKEH 495
           A  + ++M  + D   W  ++G    H
Sbjct: 519 ARYIFENM-VQRDVVTWNVMIGGYSLH 544



 Score =  211 bits (537), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 116/383 (30%), Positives = 209/383 (54%), Gaps = 3/383 (0%)

Query: 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFND 173
           T   + + C  ++       V    I+ G + +IY  N+L+ +++ C  +M  AR  F+ 
Sbjct: 63  TYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICG-NMLEARQTFDS 121

Query: 174 MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG 233
           ++ K  V+W  +I GYA  G+      +F++M+ E +E +  +F I + AC+S   +  G
Sbjct: 122 VENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLG 181

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
           K  HA VIK GF S+  +  +++ MY +   +  A Q FD + ++D+ T+N +I GY KS
Sbjct: 182 KEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKS 241

Query: 294 GSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
           G  E    +F +M+ E F PN  +F SI+  C+T  AL+ G+ VHA  +  GL  ++ +A
Sbjct: 242 GDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVA 301

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
            ALI MY  CG+I  ++++F +M  RD+V+WT M+ GY  + + ++A  LF  M + G++
Sbjct: 302 TALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQ 361

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
           PDRI ++ ++ AC+ +  +    +    +       +  +   +V +  + G +K+A ++
Sbjct: 362 PDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQV 421

Query: 473 IKSMPFKPDESVWGPLLGACKEH 495
             +M  + D   W  ++GA  E+
Sbjct: 422 FDAMS-RRDVVSWSAMIGAYVEN 443



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 123/244 (50%), Gaps = 3/244 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++ T L+  Y   G I++AR +FD M  RDVVSW+ MI  Y    C  +A+  F  M RN
Sbjct: 400 LVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRN 459

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V P+  T  ++L AC  + +L     ++  AIK  L   I V N+L+++      S++ 
Sbjct: 460 NVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHG-SIER 518

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR +F +M  ++ V+W  +I GY+  GN    L +F  ML E    N  +F   + AC+ 
Sbjct: 519 ARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSR 578

Query: 227 TGWVSFGKLIHAAVIK-HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLITWN 284
            G+V  G+   + ++   G    + +   ++D+  R   L +A    + M  K +   W+
Sbjct: 579 AGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWS 638

Query: 285 TIIA 288
           T++A
Sbjct: 639 TLLA 642


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 221/608 (36%), Positives = 333/608 (54%), Gaps = 53/608 (8%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV--N 109
           L+  Y   G + +AR +FDEMP  DVVSW  +I  Y        A  +F +M  NE    
Sbjct: 168 LVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMT-NEFGFR 226

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P+  TL +VL  C  + + S     HG A+   +  +++V N L+D+YA   + MD A  
Sbjct: 227 PDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGM-MDEANT 285

Query: 170 VFNDMKWKNDVSWTTL-----------------------------------ITGYAHSGN 194
           VF++M  K+ VSW  +                                   I+GYA  G 
Sbjct: 286 VFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGL 345

Query: 195 GYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH-------GFGS 247
           GY  LGV ++ML  G++ N  +    +  CAS G +  GK IH   IK+       G G 
Sbjct: 346 GYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGD 405

Query: 248 NLPVMNSILDMYCRFDCLSDANQYFDEMT--EKDLITWNTIIAGYEKSG-SSECLNMFSK 304
              V+N ++DMY +   +  A   FD ++  E+D++TW  +I GY + G +++ L + S+
Sbjct: 406 ENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSE 465

Query: 305 MKSE--RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG-NLALANALIDMYAK 361
           M  E  +  PN FT +  + ACA+LAALS G+Q+HA  +R   +   L ++N LIDMYAK
Sbjct: 466 MFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAK 525

Query: 362 CGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAV 421
           CG+I D++ +F  M +++ VTWTS+M GYG HG+G+EA+ +F+EM + G + D +  + V
Sbjct: 526 CGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVV 585

Query: 422 LTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKP 480
           L ACSH+G++D+G++YF  M  D+ V+P  E Y C+VDLLGRAGR+  A  LI+ MP +P
Sbjct: 586 LYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEP 645

Query: 481 DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRK 540
              VW  LL  C+ H    LG+ AA ++ +L  N  G+Y +LSN+YA  G+W++  + R 
Sbjct: 646 PPVVWVALLSCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRS 705

Query: 541 IMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDC 600
           +MR  G KK  G SW+E       F   DK   H + +Y VL   ++ + +  Y P+   
Sbjct: 706 LMRHKGIKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLSDHMQRIKDIGYVPETGF 765

Query: 601 LIHDLEGE 608
            +HD++ E
Sbjct: 766 ALHDVDDE 773



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 155/593 (26%), Positives = 263/593 (44%), Gaps = 83/593 (13%)

Query: 4   KRLLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSI---------------- 47
           +RL++  A    H+    +K SL S   S+++  PP I K  +I                
Sbjct: 3   RRLVTLRAAAKSHQH---LKVSLFST--SALEITPPFIHKCKTISQVKLIHQKLLSFGIL 57

Query: 48  ---LATNLIKSYFDEGLIEEARTLFDEMPERD--VVSWTVMIAGYTSFNCHNQAWTVFVE 102
              L ++LI +Y   G +  A +L    P  D  V  W  +I  Y +    N+  + F  
Sbjct: 58  TLNLTSHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCL 117

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M      P+ +T   V KAC  + S+      H ++   G   +++V N+L+ +Y+ C  
Sbjct: 118 MHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCG- 176

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAV 221
           S+ +AR VF++M   + VSW ++I  YA  G     L +F +M  E G   +  +    +
Sbjct: 177 SLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVL 236

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
             CAS G  S GK  H   +      N+ V N ++DMY +F  + +AN  F  M  KD++
Sbjct: 237 PPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVV 296

Query: 282 TWNTIIAGYEKSGSSE-CLNMFSKMKSER------------------------------- 309
           +WN ++AGY + G  E  + +F +M+ E+                               
Sbjct: 297 SWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQM 356

Query: 310 ----FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL--------DGNLALANALID 357
                 PN  T  S+++ CA++ AL  G+++H   ++  +        D N+ + N LID
Sbjct: 357 LSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVI-NQLID 415

Query: 358 MYAKCGNISDSQKIFSEMS--DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG--VRP 413
           MYAKC  +  ++ +F  +S  +RD+VTWT M+ GY  HG   +A+EL  EM +     RP
Sbjct: 416 MYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRP 475

Query: 414 DRIVFMAVLTACSHAGLVDEG--LKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471
           +       L AC+    +  G  +  +   N  N  P   +  C++D+  + G + +A  
Sbjct: 476 NAFTISCALVACASLAALSIGKQIHAYALRNQQNAVP-LFVSNCLIDMYAKCGDIGDARL 534

Query: 472 LIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNMMGTYIIL 522
           +  +M  + +E  W  L+     H      LG    +R +  K + +   ++L
Sbjct: 535 VFDNM-MEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVL 586



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 40/78 (51%)

Query: 45  PSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
           P  ++  LI  Y   G I +AR +FD M E++ V+WT ++ GY       +A  +F EM 
Sbjct: 512 PLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMR 571

Query: 105 RNEVNPNAFTLSSVLKAC 122
           R     +  TL  VL AC
Sbjct: 572 RIGFKLDGVTLLVVLYAC 589


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/547 (37%), Positives = 322/547 (58%), Gaps = 4/547 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+  Y      ++A  +FD MP RDV+SW  MI+G TS   +++A  +FV M       +
Sbjct: 237 LMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELD 296

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
           + TL SVL AC  +  L    +VHG ++K G      + N L+D+Y+ C     +   +F
Sbjct: 297 SATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCS-DWRSTNKIF 355

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
            +M  KN VSWT +IT Y  +G      G+F+EM LEG   + ++ + A+ A A    + 
Sbjct: 356 RNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLK 415

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            GK +H   I++G    L V N++++MY +   + +A   FD +  KD+I+WNT+I GY 
Sbjct: 416 HGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYS 475

Query: 292 KSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           ++  ++E  ++F++M  +   PN  T T I+ A A+L++L  G+++HA  +RRG   +  
Sbjct: 476 RNNLANEAFSLFTEMLLQ-LRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDF 534

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           +ANALIDMY KCG +  ++++F  +S+++L++WT M+ GYG HG G++AI LF++M  SG
Sbjct: 535 VANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSG 594

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEA 469
           + PD   F A+L ACSH+GL DEG ++F +M  ++ + P  + Y C+VDLL   G +KEA
Sbjct: 595 IAPDAASFSAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEA 654

Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529
           YE I SMP +PD S+W  LL  C+ HR   L +  A RV +L+P   G Y++L+NIYA  
Sbjct: 655 YEFIDSMPIEPDSSIWVSLLRGCRIHRNVKLAEEVAERVFELEPENTGYYVLLANIYAEA 714

Query: 530 GKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHM 589
            +WE   K +  + G G ++  G SWIE + KV  FIA+++       +   L  + + M
Sbjct: 715 ERWEAVRKLKNKIGGRGLRENTGCSWIEAKGKVHVFIADNRNHPQGTRIAEFLNEVAKRM 774

Query: 590 NETAYEP 596
            E  ++P
Sbjct: 775 QEEGHDP 781



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 127/415 (30%), Positives = 212/415 (51%), Gaps = 14/415 (3%)

Query: 117 SVLKACKGMKSLSNAALVHGM--AIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM 174
           +VL+ C  ++SL      H +  A   G +G   V    + +    C  ++NAR VF++M
Sbjct: 96  AVLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENARRVFDEM 155

Query: 175 KWKNDVS-WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG 233
              +DV  WT L++GYA +G+   G+ +F++M   GV  + Y+ S  ++  A  G +  G
Sbjct: 156 PQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAGLGSIEDG 215

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
           +++H  + K GFGS   V N+++  Y + +   DA   FD M  +D+I+WN++I+G   +
Sbjct: 216 EVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTSN 275

Query: 294 G-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
           G   + + +F +M  E    +  T  S++ ACA L  L  G+ VH   V+ G     +LA
Sbjct: 276 GLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLA 335

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
           N L+DMY+ C +   + KIF  M  +++V+WT+M+  Y   G   +   LF EM   G R
Sbjct: 336 NVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTR 395

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE----IYGCVVDLLGRAGRVKE 468
           PD  +F   +T+  HA   +E LK+ KS++ Y +    E    +   ++++  + G ++E
Sbjct: 396 PD--IF--AITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEE 451

Query: 469 AYELIKSMPFKPDESVWGPLLGACKEHRLPNLG-KLAALRVLDLKPNMMGTYIIL 522
           A +LI       D   W  L+G    + L N    L    +L L+PN +    IL
Sbjct: 452 A-KLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQLRPNAVTMTCIL 505



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 194/379 (51%), Gaps = 7/379 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           LA  L+  Y +         +F  M +++VVSWT MI  YT    +++   +F EM    
Sbjct: 334 LANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEG 393

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
             P+ F ++S L A  G + L +   VHG AI+ G+E  + V N+LM++Y  C  +M+ A
Sbjct: 394 TRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCG-NMEEA 452

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           +L+F+ +  K+ +SW TLI GY+ +        +F EMLL+ +  N  + +  + A AS 
Sbjct: 453 KLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQ-LRPNAVTMTCILPAAASL 511

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  G+ +HA  ++ G+  +  V N+++DMY +   L  A + FD ++ K+LI+W  ++
Sbjct: 512 SSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMV 571

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-GL 345
           AGY   G   + + +F +M+    +P+  +F++I+ AC+       G +    + +   +
Sbjct: 572 AGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACSHSGLRDEGWRFFDAMRKEHKI 631

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           +  L     ++D+    GN+ ++ +    M  + D   W S++ G   H + K A E+ +
Sbjct: 632 EPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSSIWVSLLRGCRIHRNVKLAEEVAE 691

Query: 405 EMVKSGVRPDRIVFMAVLT 423
            + +  + P+   +  +L 
Sbjct: 692 RVFE--LEPENTGYYVLLA 708


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/566 (37%), Positives = 326/566 (57%), Gaps = 9/566 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++  +LI      G++ +AR +FD M  +D VSW  MIAG+       +A+  F  M   
Sbjct: 239 LVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLA 298

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
              P   T +SV+K+C  +K L    ++H   +K GL  +  V  +LM V  T C  +D+
Sbjct: 299 GAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALM-VALTKCKEIDD 357

Query: 167 ARLVFNDMKW-KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           A  +F+ M   ++ VSWT +I+GY  +G+    + +F  M  EGV+ N +++S  +    
Sbjct: 358 AFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTIL---- 413

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           +     F   IHA VIK  +  +  V  ++LD + +   +SDA + F+ +  KD+I W+ 
Sbjct: 414 TVQHAVFISEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSA 473

Query: 286 IIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAAC-ATLAALSCGQQVHAGIVRR 343
           ++AGY ++G +E    +F ++  E   PN FTF SII AC A  A++  G+Q HA  ++ 
Sbjct: 474 MLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKL 533

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
            L+  L ++++L+ +YAK GNI  + +IF    +RDLV+W SM+ GY  HG  K+A+E+F
Sbjct: 534 RLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVF 593

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGR 462
           +EM K  +  D I F+ V++AC+HAGLV +G  YF  M ND+++NP  E Y C++DL  R
Sbjct: 594 EEMQKRNLEVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSR 653

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AG + +A ++I  MPF P  +VW  +L A + HR   LGKLAA +++ L+P     Y++L
Sbjct: 654 AGMLGKAMDIINGMPFPPAATVWRIVLAASRVHRNIELGKLAAEKIISLEPQHSAAYVLL 713

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           SNIYAA G W E    RK+M     KKE G SWIEV++K   F+A D     + ++Y  L
Sbjct: 714 SNIYAAAGNWHEKVNVRKLMDKRRVKKEPGYSWIEVKNKTYSFLAGDLSHPLSDHIYSKL 773

Query: 583 EMLIRHMNETAYEPDIDCLIHDLEGE 608
             L   + +  Y+PD + + HD+E E
Sbjct: 774 SELNTRLRDVGYQPDTNYVFHDIEDE 799



 Score =  224 bits (572), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 118/451 (26%), Positives = 240/451 (53%), Gaps = 9/451 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +  +L+  Y   G + + R +FDEM +RDVVSW  ++ GY+    ++Q W +F  M    
Sbjct: 139 VGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEG 198

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
             P+ +T+S+V+ A     +++    +H + +K G E    V NSL+ + +   +  D A
Sbjct: 199 YRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRD-A 257

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R+VF++M+ K+ VSW ++I G+  +G        F  M L G +    +F+  +++CAS 
Sbjct: 258 RVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASL 317

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLITWNTI 286
             +   +++H   +K G  +N  V+ +++    +   + DA   F  M   + +++W  +
Sbjct: 318 KELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAM 377

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+GY ++G + + +N+FS M+ E   PN FT+++I+    T+       ++HA +++   
Sbjct: 378 ISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTIL----TVQHAVFISEIHAEVIKTNY 433

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           + + ++  AL+D + K GNISD+ K+F  +  +D++ W++M+ GY   G  +EA ++F +
Sbjct: 434 EKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQ 493

Query: 406 MVKSGVRPDRIVFMAVLTACSH-AGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
           + + G++P+   F +++ AC+     V++G ++        +N    +   +V L  + G
Sbjct: 494 LTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRG 553

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            ++ A+E+ K    + D   W  ++    +H
Sbjct: 554 NIESAHEIFKRQK-ERDLVSWNSMISGYAQH 583



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 130/428 (30%), Positives = 222/428 (51%), Gaps = 8/428 (1%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           A+ LFD+ P RD+     ++  Y+  +   +A  +FV + R+ ++P+++T+S VL  C G
Sbjct: 55  AQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAG 114

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTT 184
             + +    VH   +K GL   + V NSL+D+Y T   ++ + R VF++M  ++ VSW +
Sbjct: 115 SFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMY-TKTGNVRDGRRVFDEMGDRDVVSWNS 173

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG 244
           L+TGY+ +        +F  M +EG   + Y+ S  + A A+ G V+ G  IHA V+K G
Sbjct: 174 LLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLG 233

Query: 245 FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFS 303
           F +   V NS++ M  +   L DA   FD M  KD ++WN++IAG+  +G   E    F+
Sbjct: 234 FETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFN 293

Query: 304 KMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG 363
            M+     P   TF S+I +CA+L  L   + +H   ++ GL  N  +  AL+    KC 
Sbjct: 294 NMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCK 353

Query: 364 NISDSQKIFSEMSD-RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
            I D+  +FS M   + +V+WT+M+ GY  +G   +A+ LF  M + GV+P+   +  +L
Sbjct: 354 EIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTIL 413

Query: 423 TACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDE 482
           T   HA  + E       +   N   +  +   ++D   + G + +A ++ + +  K D 
Sbjct: 414 TV-QHAVFISE---IHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETK-DV 468

Query: 483 SVWGPLLG 490
             W  +L 
Sbjct: 469 IAWSAMLA 476



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 122/247 (49%), Gaps = 4/247 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S + T L+ ++   G I +A  +F+ +  +DV++W+ M+AGY       +A  +F ++ R
Sbjct: 437 SSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTR 496

Query: 106 NEVNPNAFTLSSVLKACKG-MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
             + PN FT  S++ AC     S+      H  AIK  L  ++ V +SL+ +YA    ++
Sbjct: 497 EGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRG-NI 555

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           ++A  +F   K ++ VSW ++I+GYA  G     L VF+EM    +E++  +F   + AC
Sbjct: 556 ESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISAC 615

Query: 225 ASTGWVSFGK-LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT- 282
           A  G V  G+   +  +  H     +   + ++D+Y R   L  A    + M      T 
Sbjct: 616 AHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAATV 675

Query: 283 WNTIIAG 289
           W  ++A 
Sbjct: 676 WRIVLAA 682


>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 939

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/565 (36%), Positives = 321/565 (56%), Gaps = 5/565 (0%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G  I+   L+  YF    + EAR +F +M  +D V+W  MI GY     H  +  +F++M
Sbjct: 255 GDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDM 314

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           +   V P+  +++S ++AC     L     VH   I  G E      N L+D+YA C   
Sbjct: 315 IDGFV-PDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCG-D 372

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +  A+ VF+  K K+ V+W +LI GY  SG    GL  FK M +E  + +  +F + +  
Sbjct: 373 LLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMER-KPDSVTFVLLLSI 431

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
            +    ++ G+ IH  VIK GF + L + NS+LD+Y +   + D  + F  M+  D+I+W
Sbjct: 432 FSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISW 491

Query: 284 NTIIAG-YEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           NT+IA        +    M ++M++E   P+  T   I+  C+ LA    G+++H  I +
Sbjct: 492 NTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFK 551

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            G + N+ + NALI+MY+KCG++ +  K+F  M ++D+VTWT+++  +G +G GK+A++ 
Sbjct: 552 SGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKA 611

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLG 461
           F +M  SGV PD + F+A + ACSH+G+V EGL++F  M  DYN+ P  E Y CVVDLL 
Sbjct: 612 FQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLA 671

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           R+G + +A E I SMP KPD S+WG LL AC+     N+ +  + ++L+L  +  G Y++
Sbjct: 672 RSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVL 731

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGV 581
           +SNIYA  GKW++    R  M+  G KKE G SWIE++ +V  F   DK       V  +
Sbjct: 732 VSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDKSFEQYDKVKDL 791

Query: 582 LEMLIRHMNETAYEPDIDCLIHDLE 606
           LE L+R M +  Y  D+   +HD+E
Sbjct: 792 LEYLVRLMAKEGYVADLQFALHDVE 816



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 130/431 (30%), Positives = 222/431 (51%), Gaps = 5/431 (1%)

Query: 62  IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121
           ++ AR +F+EM  RD VSW  +I+GY S      A  ++ +     + P+ FT+SSVL A
Sbjct: 172 LDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLA 231

Query: 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS 181
           C  + ++     VHG+  K G+ G + + N L+ +Y      +  AR VF+ M  K+ V+
Sbjct: 232 CGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFK-FERLREARRVFSKMAVKDSVT 290

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           W T+I GYA  G     + +F +M ++G   +  S +  +RAC  +G +  GK +H  +I
Sbjct: 291 WNTMICGYAQLGRHEASVKLFMDM-IDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLI 349

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLN 300
             GF  +    N ++DMY +   L  A + FD    KD +TWN++I GY +SG   E L 
Sbjct: 350 GSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLE 409

Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360
            F  MK ER  P+  TF  +++  + LA ++ G+ +H  +++ G +  L + N+L+D+YA
Sbjct: 410 SFKMMKMER-KPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYA 468

Query: 361 KCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420
           KCG + D  K+FS MS  D+++W +++             ++ +EM   G+ PD    + 
Sbjct: 469 KCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLG 528

Query: 421 VLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKP 480
           +L  CS   +  +G +    +       N  I   ++++  + G ++   ++ K M  K 
Sbjct: 529 ILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEK- 587

Query: 481 DESVWGPLLGA 491
           D   W  L+ A
Sbjct: 588 DVVTWTALISA 598



 Score =  218 bits (555), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 123/405 (30%), Positives = 212/405 (52%), Gaps = 4/405 (0%)

Query: 73  PERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAA 132
           P  +V  W  +I   T      QA   + EM   ++ P+AFT  SV+ +C  +  L    
Sbjct: 82  PTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGC 141

Query: 133 LVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHS 192
           +VH  A++ G E  +Y+ N+L+D+Y+   + +DNAR VF +M  ++ VSW +LI+GY  +
Sbjct: 142 IVHEHAMEMGFESDLYIGNALIDMYSRF-VDLDNARYVFEEMSNRDSVSWNSLISGYCSN 200

Query: 193 GNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVM 252
           G     L ++ +  + G+  + ++ S  + AC S   V  G  +H  + K G   ++ + 
Sbjct: 201 GFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIG 260

Query: 253 NSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSEC-LNMFSKMKSERFS 311
           N +L MY +F+ L +A + F +M  KD +TWNT+I GY + G  E  + +F  M  + F 
Sbjct: 261 NGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDM-IDGFV 319

Query: 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKI 371
           P+  + TS I AC     L  G+ VH  ++  G + +    N LIDMYAKCG++  +Q++
Sbjct: 320 PDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEV 379

Query: 372 FSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLV 431
           F     +D VTW S++ GY   G+ KE +E F +M+K   +PD + F+ +L+  S    +
Sbjct: 380 FDTTKCKDSVTWNSLINGYTQSGYYKEGLESF-KMMKMERKPDSVTFVLLLSIFSQLADI 438

Query: 432 DEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
           ++G      +  +       I   ++D+  + G + +  ++   M
Sbjct: 439 NQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYM 483



 Score = 43.9 bits (102), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 34/161 (21%), Positives = 72/161 (44%), Gaps = 3/161 (1%)

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGA 392
           + VH+ I+  GL  ++  +  LI  YA+  +   S  +F  +S   ++  W S++     
Sbjct: 39  RTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTH 98

Query: 393 HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEI 452
           +G   +A+  + EM +  ++PD   F +V+ +C+    ++ G    +   +     +  I
Sbjct: 99  NGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYI 158

Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL-GAC 492
              ++D+  R   +  A  + + M  + D   W  L+ G C
Sbjct: 159 GNALIDMYSRFVDLDNARYVFEEMSNR-DSVSWNSLISGYC 198


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/636 (32%), Positives = 355/636 (55%), Gaps = 69/636 (10%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P   +     ++  Y  +G +E+A  +FD +P RD VSWT +I GY        A  +F
Sbjct: 36  MPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIF 95

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
           V+MV+++V P  FTL++VL +C    S      VH   +K GL   + V NSL+++YA  
Sbjct: 96  VDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKT 155

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEM--------------- 205
              +  A++VF+ MK +N  SW  +I+ + + G     L  F+ +               
Sbjct: 156 G-DLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGC 214

Query: 206 ---------------LLEGVEMNPYSFSIA--VRACASTGWVSFGKLIHAAVIKHGFGSN 248
                          +L+   + P  FS+A  + ACA+   +SFGK IH  +++  F ++
Sbjct: 215 NQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDAS 274

Query: 249 LPVMNSILDMYCR-----------------------FDCL----------SDANQYFDEM 275
             V N+++ MY +                       F  L          + A Q F+ +
Sbjct: 275 GAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSL 334

Query: 276 TEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334
            + D++ W  +I GY ++G +++ + +F  M SE   PN FT  ++++A +++ +L+ G+
Sbjct: 335 KDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGK 394

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEM-SDRDLVTWTSMMIGYGAH 393
           Q+HA  +R G   + ++ NAL  MYAK G+I+ ++K+F+ +  +RD V+WTSM++    H
Sbjct: 395 QIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQH 454

Query: 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEI 452
           G G+EAIELF++M+  G++PD I ++ VL+AC+H GLV++G  YF  M N + ++P    
Sbjct: 455 GLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSH 514

Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLK 512
           Y C+VDL GRAG ++EAY+ +++MP +PD   WG LL +CK ++  +L K+AA R+L ++
Sbjct: 515 YACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIE 574

Query: 513 PNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMG 572
           PN  G Y  L+N+Y++ GKW++ AK RK+M+  G KKE G+SW+++++K   F   D + 
Sbjct: 575 PNNSGAYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWVQIQNKTHVFGVEDGLH 634

Query: 573 SHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
                +Y +++ + + + +  + PD + ++HDLE E
Sbjct: 635 PQKDEIYKMMDKIWKEIKKMGFAPDTESVLHDLEVE 670



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 130/481 (27%), Positives = 217/481 (45%), Gaps = 101/481 (20%)

Query: 139 IKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGN---- 194
           +K GL  S+Y+ N+LM++YA     +D A  +FN+M  K   SW T+++GYA  G     
Sbjct: 2   VKLGLTFSVYLMNNLMNLYAKTGFHLD-AHDLFNEMPVKTTFSWNTILSGYAKQGKLEKA 60

Query: 195 --------------------GYGGLG-------VFKEMLLEGVEMNPYSFSIAVRACAST 227
                               GY  +G       +F +M+ + V    ++ +  + +CA+T
Sbjct: 61  HQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAAT 120

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM------------ 275
           G    GK +H+ V+K G  + +PV NS+L+MY +   L  A   FD M            
Sbjct: 121 GSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMI 180

Query: 276 -------------------TEKDLITWNTIIAGYEKSG-SSECLNMFSK-MKSERFSPNC 314
                              +E+D+++WN++IAG  + G  +E L  FS  +K     P+ 
Sbjct: 181 SLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDR 240

Query: 315 FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC------------ 362
           F+  S ++ACA L  LS G+Q+H  IVR   D + A+ NALI MYAK             
Sbjct: 241 FSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQ 300

Query: 363 ---------------------GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
                                G+I+ +++IF+ + D D+V WT+M++GY  +G   +AIE
Sbjct: 301 SGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIE 360

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461
           +F  MV  G RP+     A+L+A S    ++ G +   S        +  +   +  +  
Sbjct: 361 VFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYA 420

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNMMGTY 519
           +AG +  A ++   +    D   W  ++ A  +H L    +     +  L +KP+ + TY
Sbjct: 421 KAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHI-TY 479

Query: 520 I 520
           +
Sbjct: 480 V 480



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 142/303 (46%), Gaps = 72/303 (23%)

Query: 240 VIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-- 297
           ++K G   ++ +MN+++++Y +     DA+  F+EM  K   +WNTI++GY K G  E  
Sbjct: 1   MVKLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKA 60

Query: 298 ------------------------------CLNMFSKMKSERFSPNCFTFTSIIAACATL 327
                                          + +F  M  ++  P  FT T+++A+CA  
Sbjct: 61  HQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAAT 120

Query: 328 AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEM------------ 375
            +   G++VH+ +V+ GL   + +AN+L++MYAK G++  ++ +F  M            
Sbjct: 121 GSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMI 180

Query: 376 -------------------SDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK-SGVRPDR 415
                              S+RD+V+W SM+ G   HG   EA++ F  ++K + ++PDR
Sbjct: 181 SLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDR 240

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCV----VDLLGRAGRVKEAYE 471
               + L+AC++     E L + K ++ Y V    +  G V    + +  ++G V+ A  
Sbjct: 241 FSLASALSACANL----EKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARR 296

Query: 472 LIK 474
           +I+
Sbjct: 297 IIE 299


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/570 (35%), Positives = 327/570 (57%), Gaps = 7/570 (1%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFD--EMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +G   + T L+  Y     + EA  LF   E   ++ V WT M+ GY       +A   F
Sbjct: 194 EGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFF 253

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
             M    V  N +T  ++L AC  + +      VHG  +K G   ++YV+++L+D+YA C
Sbjct: 254 RYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKC 313

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
              + NA+ +   M+  + VSW +L+ G+   G     L +FK M    ++++ Y+F  +
Sbjct: 314 G-DLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFP-S 371

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           V  C   G ++  K +H  +IK GF +   V N+++DMY +   +  A   F++M EKD+
Sbjct: 372 VLNCCVVGSIN-PKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDV 430

Query: 281 ITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           I+W +++ GY ++ S  E L +F  M+    +P+ F   SI++ACA L  L  G+QVH  
Sbjct: 431 ISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLD 490

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
            ++ GL  + ++ N+L+ MYAKCG + D+  IF  M  +D++TWT++++GY  +G G+ +
Sbjct: 491 FIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNS 550

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVD 458
           ++ +D MV SG RPD I F+ +L ACSHAGLVDEG KYF+ MN  Y + P  E Y C++D
Sbjct: 551 LKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMID 610

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518
           L GR+G++ EA +L+  M  KPD +VW  LL AC+ H    L + AA  + +L+P     
Sbjct: 611 LFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAATNLFELEPMNAMP 670

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
           Y++LSN+Y+A  KW + AK RK+M+  G  KE G SW+E+  +V  FI++D+       +
Sbjct: 671 YVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISDDRGHPREAEI 730

Query: 579 YGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           Y  ++ +I  + E  Y PD+   +HD++ E
Sbjct: 731 YTKIDEIILRIKEAGYVPDMSFSLHDMDKE 760



 Score =  261 bits (668), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 151/540 (27%), Positives = 272/540 (50%), Gaps = 64/540 (11%)

Query: 9   YAATFHCHKIPPIIK----QSLQSVKKSSIQSDPPLIPKGP------------------- 45
           + A ++C+ +P + K    +++Q V      S     P  P                   
Sbjct: 4   FHAFYYCNLLPWLNKITDERTVQQVIMHKFSSKVLSFPHNPCKFMAFLRSIHTTTAASYE 63

Query: 46  SILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIA------------------- 85
           SI  TN L+      G + +AR LFD+MP++D  SW  MI+                   
Sbjct: 64  SIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCS 123

Query: 86  ------------GYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAAL 133
                       GY  F C  +A+ +F  M       + FTL SVL+ C  +  +    +
Sbjct: 124 CKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEM 183

Query: 134 VHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNARLVFNDMKW--KNDVSWTTLITGYA 190
           +HG  +K G EG+++V   L+D+YA C C+S   A  +F  +++  KN V WT ++TGYA
Sbjct: 184 IHGFVVKNGFEGNVFVVTGLVDMYAKCKCVS--EAEFLFKGLEFDRKNHVLWTAMVTGYA 241

Query: 191 HSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLP 250
            +G+GY  +  F+ M  +GVE N Y+F   + AC+S     FG+ +H  ++K GFGSN+ 
Sbjct: 242 QNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVY 301

Query: 251 VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSER 309
           V ++++DMY +   L +A    + M + D+++WN+++ G+ + G   E L +F  M    
Sbjct: 302 VQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRN 361

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
              + +TF S++  C   +     + VH  I++ G +    ++NAL+DMYAK G++  + 
Sbjct: 362 MKIDDYTFPSVLNCCVVGSINP--KSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAY 419

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
            +F +M ++D+++WTS++ GY  +   +E++++F +M  +GV PD+ +  ++L+AC+   
Sbjct: 420 TVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELT 479

Query: 430 LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           L++ G +         +  ++ +Y  +V +  + G + +A  +  SM  K D   W  ++
Sbjct: 480 LLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVK-DVITWTAII 538



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 121/437 (27%), Positives = 211/437 (48%), Gaps = 60/437 (13%)

Query: 146 SIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGN----------- 194
           SIY  N L++  +     +++AR +F+ M  K++ SW T+I+ Y + G            
Sbjct: 64  SIYQTNQLLNQLSKSG-QVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGC 122

Query: 195 -------------GYGGLG-------VFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGK 234
                        GY   G       +F+ M LEG + + ++    +R C+S G +  G+
Sbjct: 123 SCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGE 182

Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFD--EMTEKDLITWNTIIAGYEK 292
           +IH  V+K+GF  N+ V+  ++DMY +  C+S+A   F   E   K+ + W  ++ GY +
Sbjct: 183 MIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQ 242

Query: 293 SGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLAL 351
           +G   + +  F  M ++    N +TF +I+ AC+++ A   G+QVH  IV+ G   N+ +
Sbjct: 243 NGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYV 302

Query: 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411
            +AL+DMYAKCG++ +++ +   M D D+V+W S+M+G+  HG  +EA+ LF  M    +
Sbjct: 303 QSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNM 362

Query: 412 RPDRIVFMAVLTAC---------SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           + D   F +VL  C          H  ++  G + +K +++            +VD+  +
Sbjct: 363 KIDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSN-----------ALVDMYAK 411

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLG--ACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520
            G +  AY + + M  + D   W  L+   A       +L     +RV  + P+      
Sbjct: 412 TGDMDCAYTVFEKM-LEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVAS 470

Query: 521 ILSNIYAAEGKWEEFAK 537
           ILS    AE    EF K
Sbjct: 471 ILSA--CAELTLLEFGK 485


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/549 (37%), Positives = 316/549 (57%), Gaps = 4/549 (0%)

Query: 60  GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119
           G ++ A+  F  + +RDVV +  +IA       + +A+  +  M  + V  N  T  S+L
Sbjct: 278 GDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSIL 337

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179
            AC   K+L    L+H    ++G    + + N+L+ +YA C   +  AR +F  M  ++ 
Sbjct: 338 NACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCG-DLPKARELFYTMPKRDL 396

Query: 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAA 239
           +SW  +I GYA   +    + ++K+M  EGV+    +F   + ACA++   + GK+IH  
Sbjct: 397 ISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHED 456

Query: 240 VIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-C 298
           +++ G  SN  + N++++MY R   L +A   F+    +D+I+WN++IAG+ + GS E  
Sbjct: 457 ILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETA 516

Query: 299 LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDM 358
             +F +M++E   P+  TF S+++ C    AL  G+Q+H  I   GL  ++ L NALI+M
Sbjct: 517 YKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINM 576

Query: 359 YAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP-DRIV 417
           Y +CG++ D++ +F  +  RD+++WT+M+ G    G   +AIELF +M   G RP D   
Sbjct: 577 YIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGST 636

Query: 418 FMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
           F ++L+AC+HAGLV EG + F SM ++Y V P  E YGC+V LLGRA R +EA  LI  M
Sbjct: 637 FTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQM 696

Query: 477 PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFA 536
           PF PD +VW  LLGAC+ H    L + AA   L L       YI+LSN+YAA G+W++ A
Sbjct: 697 PFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVA 756

Query: 537 KFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEP 596
           K R++M G G +KE G SWIEV + +  FIA D+    T  +Y  L+ L   M E  Y P
Sbjct: 757 KIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGYFP 816

Query: 597 DIDCLIHDL 605
           D   ++HDL
Sbjct: 817 DTQHVLHDL 825



 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 129/474 (27%), Positives = 241/474 (50%), Gaps = 11/474 (2%)

Query: 23  KQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTV 82
           K+    + K+  Q DP +          +L+  Y   G +  AR +F  +  RDVVS+  
Sbjct: 148 KKIHSQIIKAGYQRDPRV--------QNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNT 199

Query: 83  MIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG 142
           M+  Y       +   +F +M    ++P+  T  ++L A      L     +H + ++EG
Sbjct: 200 MLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEG 259

Query: 143 LEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVF 202
           L   I V  +L+ +   C   +D+A+  F  +  ++ V +  LI   A  G+       +
Sbjct: 260 LNSDIRVGTALVTMCVRCG-DVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQY 318

Query: 203 KEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRF 262
             M  +GV +N  ++   + AC+++  +  GKLIH+ + + G  S++ + N+++ MY R 
Sbjct: 319 YRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARC 378

Query: 263 DCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSII 321
             L  A + F  M ++DLI+WN IIAGY  +    E + ++ +M+SE   P   TF  ++
Sbjct: 379 GDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLL 438

Query: 322 AACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLV 381
           +ACA  +A + G+ +H  I+R G+  N  LANAL++MY +CG++ ++Q +F     RD++
Sbjct: 439 SACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVI 498

Query: 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441
           +W SM+ G+  HG  + A +LF EM    + PD I F +VL+ C +   ++ G +    +
Sbjct: 499 SWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRI 558

Query: 442 NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            +  +  +  +   ++++  R G +++A  +  S+  + D   W  ++G C + 
Sbjct: 559 TESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHR-DVMSWTAMIGGCADQ 611



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 129/454 (28%), Positives = 231/454 (50%), Gaps = 4/454 (0%)

Query: 44  GPSILATNL-IKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           GP I  +NL I  Y     + +A  +F EMP RDV+SW  +I+ Y       +A+ +F E
Sbjct: 59  GPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEE 118

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M      PN  T  S+L AC     L N   +H   IK G +    V+NSL+ +Y  C  
Sbjct: 119 MQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCG- 177

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            +  AR VF  +  ++ VS+ T++  YA        LG+F +M  EG+  +  ++   + 
Sbjct: 178 DLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLD 237

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           A  +   +  GK IH   ++ G  S++ V  +++ M  R   +  A Q F  + ++D++ 
Sbjct: 238 AFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVV 297

Query: 283 WNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           +N +IA   + G + E    + +M+S+  + N  T+ SI+ AC+T  AL  G+ +H+ I 
Sbjct: 298 YNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHIS 357

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
             G   ++ + NALI MYA+CG++  ++++F  M  RDL++W +++ GY       EA+ 
Sbjct: 358 EDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMR 417

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461
           L+ +M   GV+P R+ F+ +L+AC+++    +G    + +    +  N  +   ++++  
Sbjct: 418 LYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYR 477

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           R G + EA  + +    + D   W  ++    +H
Sbjct: 478 RCGSLMEAQNVFEGTQAR-DVISWNSMIAGHAQH 510



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 115/413 (27%), Positives = 217/413 (52%), Gaps = 5/413 (1%)

Query: 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFND 173
           T  ++L+ C   + L  A  +H   ++ G+   I++ N L+++Y  C   +D A  VF +
Sbjct: 29  TYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLD-AHQVFKE 87

Query: 174 MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG 233
           M  ++ +SW +LI+ YA  G       +F+EM   G   N  ++   + AC S   +  G
Sbjct: 88  MPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENG 147

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EK 292
           K IH+ +IK G+  +  V NS+L MY +   L  A Q F  ++ +D++++NT++  Y +K
Sbjct: 148 KKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQK 207

Query: 293 SGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
           +   ECL +F +M SE  SP+  T+ +++ A  T + L  G+++H   V  GL+ ++ + 
Sbjct: 208 AYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVG 267

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
            AL+ M  +CG++  +++ F  ++DRD+V + +++     HGH  EA E +  M   GV 
Sbjct: 268 TALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVA 327

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
            +R  ++++L ACS +  ++ G      +++   + + +I   ++ +  R G + +A EL
Sbjct: 328 LNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKAREL 387

Query: 473 IKSMPFKPDESVWGPLLG--ACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
             +MP K D   W  ++   A +E R   +     ++   +KP  +    +LS
Sbjct: 388 FYTMP-KRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLS 439



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 161/287 (56%), Gaps = 2/287 (0%)

Query: 210 VEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDAN 269
            E +  ++   ++ C     +   K IHA +++ G G ++ + N +++MY +   + DA+
Sbjct: 23  TETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAH 82

Query: 270 QYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLA 328
           Q F EM  +D+I+WN++I+ Y + G   +   +F +M++  F PN  T+ SI+ AC + A
Sbjct: 83  QVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPA 142

Query: 329 ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMI 388
            L  G+++H+ I++ G   +  + N+L+ MY KCG++  ++++F+ +S RD+V++ +M+ 
Sbjct: 143 ELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLG 202

Query: 389 GYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP 448
            Y    + KE + LF +M   G+ PD++ ++ +L A +   ++DEG +  K   +  +N 
Sbjct: 203 LYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNS 262

Query: 449 NKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           +  +   +V +  R G V  A +  K +  + D  V+  L+ A  +H
Sbjct: 263 DIRVGTALVTMCVRCGDVDSAKQAFKGIADR-DVVVYNALIAALAQH 308



 Score = 47.8 bits (112), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 70/158 (44%), Gaps = 20/158 (12%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L   LI  Y   G +++AR +F  +  RDV+SWT MI G        +A  +F +M +NE
Sbjct: 569 LGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQM-QNE 627

Query: 108 --VNPNAFTLSSVLKACKGMKSLSNAALV-HGMAIKEGLEGSIYVENSLMDVYATCCISM 164
               P+  T +S+L AC      ++A LV  G  I   +E    V  ++   +  C + +
Sbjct: 628 GFRPPDGSTFTSILSAC------NHAGLVLEGYQIFSSMESEYGVLPTIE--HYGCLVGL 679

Query: 165 -------DNARLVFNDMKWKNDVS-WTTLITGYAHSGN 194
                    A  + N M +  D + W TL+      GN
Sbjct: 680 LGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGN 717


>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
          Length = 732

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 209/552 (37%), Positives = 316/552 (57%), Gaps = 2/552 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y     ++  R LFD+M  ++++SWT MI+GY   +   +A  +F EM R    P+
Sbjct: 179 LIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPD 238

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
            F  +SVL +C  +++L     VH   IK  LE + +V+N L+D+YA   +  D A+ VF
Sbjct: 239 GFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXD-AKKVF 297

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           + M  +N +S+  +I GY+        L +F EM +     +  +F   +   AS   + 
Sbjct: 298 DVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALE 357

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
             K IH  +IK G   +L   ++++D+Y +   + DA   F+EM EKD++ WN +  GY 
Sbjct: 358 LSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYT 417

Query: 292 KS-GSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           +   + E L ++S ++  R  PN FTF ++I A + LA+L  GQQ H  +V+ GLD    
Sbjct: 418 QHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPF 477

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           + NAL+DMYAKCG+I +++K+F+    RD+V W SM+  +  HG  +EA+ +F EM+K G
Sbjct: 478 VTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEG 537

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470
           ++P+ + F+AVL+ACSHAG V++GL +F SM  + + P  E Y CVV LLGR+G++ EA 
Sbjct: 538 IQPNYVTFVAVLSACSHAGXVEDGLNHFNSMPGFGIKPGTEHYACVVSLLGRSGKLFEAK 597

Query: 471 ELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEG 530
           E I+ MP +P   VW  LL AC+      LGK AA   +   P   G+YI+LSNI+A++G
Sbjct: 598 EFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKG 657

Query: 531 KWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMN 590
            W +  K R  M      KE G SWIEV +KV  FIA          +  VL++LI+H+ 
Sbjct: 658 MWADVKKVRDRMDSSEVVKEPGRSWIEVNNKVNVFIARXTTHREADMIGSVLDILIQHIK 717

Query: 591 ETAYEPDIDCLI 602
              Y PD   L+
Sbjct: 718 GAGYVPDATALL 729



 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 146/479 (30%), Positives = 258/479 (53%), Gaps = 5/479 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + T+LI  Y   G IE AR +FD++ E+  V+WT +IAGYT       +  +F +M    
Sbjct: 74  VGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETN 133

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V P+ + +SSVL AC  ++ L     +H   ++ G E  + V N L+D Y T C  +   
Sbjct: 134 VVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFY-TKCNRVKAG 192

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R +F+ M  KN +SWTT+I+GY  +   +  + +F EM   G + + ++ +  + +C S 
Sbjct: 193 RKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSL 252

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  G+ +HA  IK    SN  V N ++DMY + + L DA + FD M E+++I++N +I
Sbjct: 253 EALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMI 312

Query: 288 AGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            GY  +   SE L +F +M+   F P+  TF S++   A+L AL   +Q+H  I++ G+ 
Sbjct: 313 EGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKXGVS 372

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            +L   +ALID+Y+KC  + D++ +F EM+++D+V W +M  GY  H   +EA++L+  +
Sbjct: 373 LDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTL 432

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
             S  +P+   F A++TA S+   +  G ++   +    ++    +   +VD+  + G +
Sbjct: 433 QFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSI 492

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNMMGTYIILS 523
           +EA ++  S  ++ D   W  ++    +H      LG    +    ++PN +    +LS
Sbjct: 493 EEARKMFNSSIWR-DVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLS 550



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 128/425 (30%), Positives = 225/425 (52%), Gaps = 8/425 (1%)

Query: 95  QAWTVFVEMVRNE-VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSL 153
           +A  VFV++ R    +PN F L+SV++AC  +  +   A +HG  ++ G +  +YV  SL
Sbjct: 19  EALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSL 78

Query: 154 MDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMN 213
           +D Y+     ++ ARLVF+ +  K  V+WTT+I GY   G     L +F +M    V  +
Sbjct: 79  IDFYSKNG-BIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNVVPD 137

Query: 214 PYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFD 273
            Y  S  + AC+   ++  GK IHA V++ G   ++ V+N ++D Y + + +    + FD
Sbjct: 138 RYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFD 197

Query: 274 EMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSC 332
           +M  K++I+W T+I+GY + S   E + +F +M    + P+ F  TS++ +C +L AL  
Sbjct: 198 QMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQ 257

Query: 333 GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA 392
           G+QVHA  ++  L+ N  + N LIDMYAK   + D++K+F  M++++++++ +M+ GY +
Sbjct: 258 GRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSS 317

Query: 393 HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEI 452
                EA+ELF EM      P  + F+++L   +    ++   +    +    V+ +   
Sbjct: 318 QEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKXGVSLDLFA 377

Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDL- 511
              ++D+  +   VK+A  + + M  K D  VW  +     +H L N   L     L   
Sbjct: 378 GSALIDVYSKCSYVKDARHVFEEMNEK-DIVVWNAMFFGYTQH-LENEEALKLYSTLQFS 435

Query: 512 --KPN 514
             KPN
Sbjct: 436 RQKPN 440



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 173/322 (53%), Gaps = 3/322 (0%)

Query: 209 GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDA 268
           G   N +  +  +RAC   G V  G  +H  V++ GF  ++ V  S++D Y +   +  A
Sbjct: 32  GEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGBIEVA 91

Query: 269 NQYFDEMTEKDLITWNTIIAGYEKSGSSEC-LNMFSKMKSERFSPNCFTFTSIIAACATL 327
              FD++ EK  +TW TIIAGY K G S   L +F++M+     P+ +  +S+++AC+ L
Sbjct: 92  RLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNVVPDRYVVSSVLSACSML 151

Query: 328 AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMM 387
             L  G+Q+HA ++RRG + ++++ N LID Y KC  +   +K+F +M  +++++WT+M+
Sbjct: 152 EFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMI 211

Query: 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN 447
            GY  +    EA++LF EM + G +PD     +VLT+C     +++G +        N+ 
Sbjct: 212 SGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLE 271

Query: 448 PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN-LGKLAAL 506
            N+ +   ++D+  ++  + +A ++   M  +   S    + G   + +L   L     +
Sbjct: 272 SNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEM 331

Query: 507 RVLDLKPNMMGTYIILSNIYAA 528
           RV    P+++ T++ L  + A+
Sbjct: 332 RVRLFPPSLL-TFVSLLGVSAS 352


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/560 (36%), Positives = 319/560 (56%), Gaps = 3/560 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + T L+  Y   G +++AR +FD +  RDV ++ VM+ GY       +A+ +F  M +  
Sbjct: 195 IGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVG 254

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + PN  +  S+L  C   ++L+    VH   +  GL   I V  SL+ +Y TC  S++ A
Sbjct: 255 LKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCG-SIEGA 313

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R VF++MK ++ VSWT +I GYA +GN     G+F  M  EG++ +  ++   + ACA +
Sbjct: 314 RRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAIS 373

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             ++  + IH+ V   GFG++L V  +++ MY +   + DA Q FD M  +D+++W+ +I
Sbjct: 374 ANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMI 433

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
             Y ++G  +E    F  MK     P+  T+ +++ AC  L AL  G +++   ++  L 
Sbjct: 434 GAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLV 493

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            ++ L NALI M AK G++  ++ IF  M  RD++TW +M+ GY  HG+ +EA+ LFD M
Sbjct: 494 SHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRM 553

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGR 465
           +K   RP+ + F+ VL+ACS AG VDEG ++F  +     + P  ++YGC+VDLLGRAG 
Sbjct: 554 LKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGE 613

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           + EA  LIKSMP KP  S+W  LL AC+ H   ++ + AA R L + P     Y+ LS++
Sbjct: 614 LDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAERAAERCLMIDPYDGAVYVQLSHM 673

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           YAA G WE  AK RK+M   G +KE G +WIEV  KV  F+  D+       +Y  L  L
Sbjct: 674 YAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGKVHTFVVEDRSHPLVGEIYAELARL 733

Query: 586 IRHMNETAYEPDIDCLIHDL 605
           +  +    Y P    ++HD+
Sbjct: 734 MNAIKREGYIPITQNVLHDV 753



 Score =  239 bits (609), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 130/446 (29%), Positives = 233/446 (52%), Gaps = 3/446 (0%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
            LIK Y   G + EAR +FD +  + VV+W  +IAGY       +A+ +F +MV   + P
Sbjct: 97  TLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEP 156

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           +  T  SVL AC     L+    VH   +  G      +  +L+ +Y     SMD+AR V
Sbjct: 157 SIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGG-SMDDARQV 215

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F+ +  ++  ++  ++ GYA SG+      +F  M   G++ N  SF   +  C +   +
Sbjct: 216 FDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEAL 275

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
           ++GK +HA  +  G   ++ V  S++ MY     +  A + FD M  +D+++W  +I GY
Sbjct: 276 AWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGY 335

Query: 291 EKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
            ++G+ E    +F+ M+ E   P+  T+  I+ ACA  A L+  +++H+ +   G   +L
Sbjct: 336 AENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDL 395

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
            ++ AL+ MYAKCG I D++++F  M  RD+V+W++M+  Y  +G+G EA E F  M +S
Sbjct: 396 LVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRS 455

Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
            + PD + ++ +L AC H G +D G++ +      ++  +  +   ++ +  + G V+ A
Sbjct: 456 NIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERA 515

Query: 470 YELIKSMPFKPDESVWGPLLGACKEH 495
             +  +M  + D   W  ++G    H
Sbjct: 516 RYIFDTM-VRRDVITWNAMIGGYSLH 540



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 115/383 (30%), Positives = 213/383 (55%), Gaps = 3/383 (0%)

Query: 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFND 173
           T   + + C  ++  +    V    I+ G + +IY  N+L+ +Y+ C  ++  AR +F+ 
Sbjct: 59  TYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICG-NVTEARQIFDS 117

Query: 174 MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG 233
           ++ K  V+W  LI GYA  G+      +F++M+ EG+E +  +F   + AC+S   +++G
Sbjct: 118 VENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWG 177

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
           K +HA V+  GF S+  +  +++ MY +   + DA Q FD +  +D+ T+N ++ GY KS
Sbjct: 178 KEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKS 237

Query: 294 GSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
           G  E    +F +M+     PN  +F SI+  C T  AL+ G+ VHA  +  GL  ++ +A
Sbjct: 238 GDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVA 297

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
            +LI MY  CG+I  ++++F  M  RD+V+WT M+ GY  +G+ ++A  LF  M + G++
Sbjct: 298 TSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQ 357

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
           PDRI +M ++ AC+ +  ++   +    ++      +  +   +V +  + G +K+A ++
Sbjct: 358 PDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQV 417

Query: 473 IKSMPFKPDESVWGPLLGACKEH 495
             +MP + D   W  ++GA  E+
Sbjct: 418 FDAMP-RRDVVSWSAMIGAYVEN 439



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 122/243 (50%), Gaps = 3/243 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +++T L+  Y   G I++AR +FD MP RDVVSW+ MI  Y       +A+  F  M R+
Sbjct: 396 LVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRS 455

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + P+  T  ++L AC  + +L     ++  AIK  L   + + N+L+ + A    S++ 
Sbjct: 456 NIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHG-SVER 514

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR +F+ M  ++ ++W  +I GY+  GN    L +F  ML E    N  +F   + AC+ 
Sbjct: 515 ARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSR 574

Query: 227 TGWVSFGKLIHAAVIK-HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT-WN 284
            G+V  G+     +++  G    + +   ++D+  R   L +A      M  K   + W+
Sbjct: 575 AGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWS 634

Query: 285 TII 287
           +++
Sbjct: 635 SLL 637


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/565 (36%), Positives = 321/565 (56%), Gaps = 5/565 (0%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G  I+   L+  YF    + EAR +F +M  +D V+W  MI GY     H  +  +F++M
Sbjct: 255 GDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDM 314

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           +   V P+  +++S ++AC     L     VH   I  G E      N L+D+YA C   
Sbjct: 315 IDGFV-PDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCG-D 372

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +  A+ VF+  K K+ V+W +LI GY  SG    GL  FK M +E  + +  +F + +  
Sbjct: 373 LLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMER-KPDSVTFVLLLSI 431

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
            +    ++ G+ IH  VIK GF + L + NS+LD+Y +   + D  + F  M+  D+I+W
Sbjct: 432 FSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISW 491

Query: 284 NTIIAG-YEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           NT+IA        +    M ++M++E   P+  T   I+  C+ LA    G+++H  I +
Sbjct: 492 NTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFK 551

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            G + N+ + NALI+MY+KCG++ +  K+F  M ++D+VTWT+++  +G +G GK+A++ 
Sbjct: 552 SGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKA 611

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLG 461
           F +M  SGV PD + F+A + ACSH+G+V EGL++F  M  DYN+ P  E Y CVVDLL 
Sbjct: 612 FQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLA 671

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           R+G + +A E I SMP KPD S+WG LL AC+     N+ +  + ++L+L  +  G Y++
Sbjct: 672 RSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVL 731

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGV 581
           +SNIYA  GKW++    R  M+  G KKE G SWIE++ +V  F   DK       V  +
Sbjct: 732 VSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDKSFEQYDKVKDL 791

Query: 582 LEMLIRHMNETAYEPDIDCLIHDLE 606
           LE L+R M +  Y  D+   +HD+E
Sbjct: 792 LEYLVRLMAKEGYVADLQFALHDVE 816



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 130/431 (30%), Positives = 222/431 (51%), Gaps = 5/431 (1%)

Query: 62  IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121
           ++ AR +F+EM  RD VSW  +I+GY S      A  ++ +     + P+ FT+SSVL A
Sbjct: 172 LDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLA 231

Query: 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS 181
           C  + ++     VHG+  K G+ G + + N L+ +Y      +  AR VF+ M  K+ V+
Sbjct: 232 CGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFK-FERLREARRVFSKMAVKDSVT 290

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           W T+I GYA  G     + +F +M ++G   +  S +  +RAC  +G +  GK +H  +I
Sbjct: 291 WNTMICGYAQLGRHEASVKLFMDM-IDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLI 349

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLN 300
             GF  +    N ++DMY +   L  A + FD    KD +TWN++I GY +SG   E L 
Sbjct: 350 GSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLE 409

Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360
            F  MK ER  P+  TF  +++  + LA ++ G+ +H  +++ G +  L + N+L+D+YA
Sbjct: 410 SFKMMKMER-KPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYA 468

Query: 361 KCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420
           KCG + D  K+FS MS  D+++W +++             ++ +EM   G+ PD    + 
Sbjct: 469 KCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLG 528

Query: 421 VLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKP 480
           +L  CS   +  +G +    +       N  I   ++++  + G ++   ++ K M  K 
Sbjct: 529 ILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEK- 587

Query: 481 DESVWGPLLGA 491
           D   W  L+ A
Sbjct: 588 DVVTWTALISA 598



 Score =  218 bits (554), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 123/405 (30%), Positives = 212/405 (52%), Gaps = 4/405 (0%)

Query: 73  PERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAA 132
           P  +V  W  +I   T      QA   + EM   ++ P+AFT  SV+ +C  +  L    
Sbjct: 82  PTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGC 141

Query: 133 LVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHS 192
           +VH  A++ G E  +Y+ N+L+D+Y+   + +DNAR VF +M  ++ VSW +LI+GY  +
Sbjct: 142 IVHEHAMEMGFESDLYIGNALIDMYSRF-VDLDNARYVFEEMSNRDSVSWNSLISGYCSN 200

Query: 193 GNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVM 252
           G     L ++ +  + G+  + ++ S  + AC S   V  G  +H  + K G   ++ + 
Sbjct: 201 GFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIG 260

Query: 253 NSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSEC-LNMFSKMKSERFS 311
           N +L MY +F+ L +A + F +M  KD +TWNT+I GY + G  E  + +F  M  + F 
Sbjct: 261 NGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDM-IDGFV 319

Query: 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKI 371
           P+  + TS I AC     L  G+ VH  ++  G + +    N LIDMYAKCG++  +Q++
Sbjct: 320 PDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEV 379

Query: 372 FSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLV 431
           F     +D VTW S++ GY   G+ KE +E F +M+K   +PD + F+ +L+  S    +
Sbjct: 380 FDTTKCKDSVTWNSLINGYTQSGYYKEGLESF-KMMKMERKPDSVTFVLLLSIFSQLADI 438

Query: 432 DEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
           ++G      +  +       I   ++D+  + G + +  ++   M
Sbjct: 439 NQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYM 483



 Score = 43.5 bits (101), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 34/161 (21%), Positives = 72/161 (44%), Gaps = 3/161 (1%)

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGA 392
           + VH+ I+  GL  ++  +  LI  YA+  +   S  +F  +S   ++  W S++     
Sbjct: 39  RTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTH 98

Query: 393 HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEI 452
           +G   +A+  + EM +  ++PD   F +V+ +C+    ++ G    +   +     +  I
Sbjct: 99  NGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYI 158

Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL-GAC 492
              ++D+  R   +  A  + + M  + D   W  L+ G C
Sbjct: 159 GNALIDMYSRFVDLDNARYVFEEMSNR-DSVSWNSLISGYC 198


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/514 (37%), Positives = 314/514 (61%), Gaps = 3/514 (0%)

Query: 62  IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121
           ++ AR +FD+MP+RDV  W  +I GY       +A  ++  M    + P+ +T   V+++
Sbjct: 78  MDYARKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRS 137

Query: 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS 181
           C  + +L     VH   +K G +  ++V++SL+ +Y+    ++    LVF +M  +N VS
Sbjct: 138 CAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETL-GMELVFGEMVVRNIVS 196

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           WT +I GY  +     GLGVF+EM+  G + N  +    + ACA   +++ GKLIH   I
Sbjct: 197 WTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGI 256

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLN 300
           K G   ++ + N+++ +Y +   +  A   FD M  ++L++WN +IA YE++ + +  + 
Sbjct: 257 KLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVK 316

Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360
           +F +M++E+   +  T  S+I+ACA+L AL+ G+ +H  + R+GL+ N+++ NALIDMYA
Sbjct: 317 LFRRMQAEKVDFDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYA 376

Query: 361 KCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420
           KCGNI  ++++F  +  R +V+WTSM+    +HGHG++A++LF  M   GV+P+   F A
Sbjct: 377 KCGNIDLAREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAA 436

Query: 421 VLTACSHAGLVDEGLKYFKS-MNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
           V TAC H+GLV+EG K+F+S M DY++ P  E   C+VDLLGRAG + EAYE I  MP +
Sbjct: 437 VFTACRHSGLVEEGRKHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVE 496

Query: 480 PDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFR 539
           PD SVWG LLG+C+ H    L +L A ++  L P  +  Y+++SNIYA  G+WE+ A+ R
Sbjct: 497 PDVSVWGALLGSCRIHSNLELAELVAEKLFLLDPQTVTFYVLMSNIYAEAGRWEDAARLR 556

Query: 540 KIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGS 573
           K+M     KK  G S +EV  +   F++  +  S
Sbjct: 557 KLMEERELKKIPGHSLVEVNRRFHTFLSGSRSQS 590



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 113/392 (28%), Positives = 203/392 (51%), Gaps = 9/392 (2%)

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI--SM 164
             N ++ + + +L  C  +  LS    +H + +  G   ++ +   L  +   CC+  +M
Sbjct: 24  RTNYHSRSFNYLLNCCSSLPDLSR---IHALVVTNGCGQNLLLSTKL--IITACCLAPTM 78

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           D AR +F+ M  ++   W TLI GYA +G     L ++  M   G+  + Y+F   VR+C
Sbjct: 79  DYARKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSC 138

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           A    +  GK +H  ++KHGF S++ V +S++ MY +          F EM  +++++W 
Sbjct: 139 AVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWT 198

Query: 285 TIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +IAGY +     E L +F +M      PN  T  S++ ACA L  L+ G+ +H   ++ 
Sbjct: 199 AVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKL 258

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G+D +++L NALI +Y KCGN+  ++ +F  M  ++LV+W +M+  Y  +  G  A++LF
Sbjct: 259 GVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLF 318

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
             M    V  D I  ++V++AC+  G ++ G    + +    +  N  I   ++D+  + 
Sbjct: 319 RRMQAEKVDFDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKC 378

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           G +  A E+ + +P +   S W  ++GAC  H
Sbjct: 379 GNIDLAREVFERLPCRSVVS-WTSMIGACASH 409



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 97/344 (28%), Positives = 180/344 (52%), Gaps = 4/344 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + ++L+  Y   G       +F EM  R++VSWT +IAGY       +   VF EMV +
Sbjct: 164 FVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGS 223

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
              PNA TL SVL AC G++ L+   L+HG  IK G++  + + N+L+ +Y  C  +++ 
Sbjct: 224 GTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCG-NVET 282

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR +F+ M  +N VSW  +I  Y  +  G   + +F+ M  E V+ +  +    + ACAS
Sbjct: 283 ARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACAS 342

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G ++ G+ +H  V + G   N+ + N+++DMY +   +  A + F+ +  + +++W ++
Sbjct: 343 LGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVSWTSM 402

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-G 344
           I      G  E  L +FS+MK E   PN FTF ++  AC     +  G++    ++R   
Sbjct: 403 IGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGRKHFESMMRDYS 462

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMM 387
           +   +     ++D+  + G++ ++ +   +M  + D+  W +++
Sbjct: 463 IMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALL 506



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 133/246 (54%), Gaps = 4/246 (1%)

Query: 45  PSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           P +  TN LI  Y   G +E AR+LFD M  +++VSW  MIA Y   N    A  +F  M
Sbjct: 262 PDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRM 321

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
              +V+ +  T+ SV+ AC  + +L+    +H +  ++GLE ++ + N+L+D+YA C  +
Sbjct: 322 QAEKVDFDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCG-N 380

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +D AR VF  +  ++ VSWT++I   A  G+G   L +F  M  EGV+ N ++F+    A
Sbjct: 381 IDLAREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTA 440

Query: 224 CASTGWVSFGKLIHAAVIK-HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLI 281
           C  +G V  G+    ++++ +     +     ++D+  R   L +A ++ D+M  E D+ 
Sbjct: 441 CRHSGLVEEGRKHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVS 500

Query: 282 TWNTII 287
            W  ++
Sbjct: 501 VWGALL 506


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/597 (36%), Positives = 336/597 (56%), Gaps = 36/597 (6%)

Query: 45  PSILATNLIKSYFDEGLIEEARTLFDEMPER-DVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           PS+L+T ++  Y +  L+ ++  +F+ +P     ++W  +I  YTS      + + F++M
Sbjct: 39  PSLLST-ILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQM 97

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC--- 160
           + +   P+     SVLK+C  MK L     VHG  I+ G+   +Y  N+LM++Y+     
Sbjct: 98  LASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSL 157

Query: 161 -------------------------CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNG 195
                                       + + R VF  M  ++ VSW T+I+G A +G  
Sbjct: 158 EEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMH 217

Query: 196 YGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSF--GKLIHAAVIKHGFGSNLPVMN 253
              L + +EM     ++ P SF+++        +V+   GK IH   I++G+ +++ + +
Sbjct: 218 EDALMMVREM--GNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGS 275

Query: 254 SILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSP 312
           S++DMY +   + D+ + F  + + D I+WN+IIAG  ++G   E L  F +M   +  P
Sbjct: 276 SLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKP 335

Query: 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIF 372
           N  +F+SI+ ACA L  L  G+Q+H  I+R   DGN+ +A+AL+DMYAKCGNI  ++ IF
Sbjct: 336 NHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIF 395

Query: 373 SEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD 432
            +M   D+V+WT+M++GY  HGH  +AI LF  M   GV+P+ + FMAVLTACSHAGLVD
Sbjct: 396 DKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVD 455

Query: 433 EGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
           E  KYF SM  DY + P  E Y  V DLLGR GR++EAYE I  M  +P  SVW  LL A
Sbjct: 456 EAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAA 515

Query: 492 CKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEV 551
           C+ H+   L +  + ++  + P  +G Y++LSNIY+A G+W++  K R  MR  G KK+ 
Sbjct: 516 CRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKP 575

Query: 552 GMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
             SWIE+++KV  F+A DK   +   +   L++L+  M    Y  D   ++HD+E E
Sbjct: 576 ACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEE 632



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 6/91 (6%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   +A+ L+  Y   G I  AR +FD+M   D+VSWT MI GY        A ++F  M
Sbjct: 370 GNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRM 429

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALV 134
               V PN     +VL AC      S+A LV
Sbjct: 430 EVEGVKPNYVAFMAVLTAC------SHAGLV 454


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/577 (36%), Positives = 335/577 (58%), Gaps = 17/577 (2%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S +   L+  Y   G +  ++ L      RD+V+W  +++         +A     EMV 
Sbjct: 232 SFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVL 291

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG-LEGSIYVENSLMDVYATCCISM 164
             V P+ FT+SSVL AC  ++ L     +H  A+K G L+ + +V ++L+D+Y  C   +
Sbjct: 292 EGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVL 351

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAVRA 223
              R VF+ M  +    W  +ITGYA +      L +F EM    G+  N  + +  V A
Sbjct: 352 SGCR-VFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPA 410

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C  +G  S  + IH  V+K G   +  V N+++DMY R   +  A + F +M ++DL+TW
Sbjct: 411 CVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTW 470

Query: 284 NTIIAGYEKSGSSE-CLNMFSKMK------SERFS-----PNCFTFTSIIAACATLAALS 331
           NTII GY  S   E  L M  KM+      SER S     PN  T  +I+ +CA L+AL+
Sbjct: 471 NTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALA 530

Query: 332 CGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG 391
            G+++HA  ++  L  ++A+ +AL+DMYAKCG +  S+K+F ++  R+++TW  +++ YG
Sbjct: 531 KGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYG 590

Query: 392 AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNK 450
            HG+ ++AI++   M+  GV+P+ + F++V  ACSH+G+V+EGLK F +M  DY V P+ 
Sbjct: 591 MHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSS 650

Query: 451 EIYGCVVDLLGRAGRVKEAYELIKSMPFKPDES-VWGPLLGACKEHRLPNLGKLAALRVL 509
           + Y CVVDLLGRAGRVKEAY+LI  +P   D++  W  LLGAC+ H    +G++AA  ++
Sbjct: 651 DHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACRIHNNLEIGEIAAQNLI 710

Query: 510 DLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIAND 569
            L+PN+   Y++L+NIY++ G W +  + R+ M+  G +KE G SWIE  D+V  F+A D
Sbjct: 711 QLEPNVASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGCSWIEHGDEVHKFVAGD 770

Query: 570 KMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
                ++ + G LE L   M +  Y PD  C++H++E
Sbjct: 771 SSHPQSEKLRGYLETLWERMRKEGYIPDTSCVLHNVE 807



 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 118/449 (26%), Positives = 225/449 (50%), Gaps = 19/449 (4%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A  L+  Y   G       +FD + ER+ VSW  +I+   SF     A   F  M+  +
Sbjct: 131 VANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDED 190

Query: 108 VNPNAFTLSSVLKACKGM---KSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
           V P++FTL SV  AC      + L     VH   +++G E + ++ N+L+ +Y      +
Sbjct: 191 VEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKG-ELNSFIINTLVAMYGKMG-KL 248

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
            +++++    + ++ V+W T+++    +      L   +EM+LEGVE + ++ S  + AC
Sbjct: 249 ASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPAC 308

Query: 225 ASTGWVSFGKLIHAAVIKHG-FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           +    +  GK +HA  +K+G    N  V ++++DMYC    +    + FD M ++ +  W
Sbjct: 309 SHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLW 368

Query: 284 NTIIAGYEKSG-SSECLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           N +I GY ++    E L +F +M +S     N  T   ++ AC    A S  + +H  +V
Sbjct: 369 NAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVV 428

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           +RGLD +  + NAL+DMY++ G I  +++IF +M DRDLVTW +++ GY      ++A+ 
Sbjct: 429 KRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALL 488

Query: 402 LFDEM-----------VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK 450
           +  +M            +  ++P+ I  M +L +C+    + +G +        N+  + 
Sbjct: 489 MLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDV 548

Query: 451 EIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
            +   +VD+  + G ++ + ++   +P +
Sbjct: 549 AVGSALVDMYAKCGCLQMSRKVFDQIPIR 577



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 126/509 (24%), Positives = 234/509 (45%), Gaps = 31/509 (6%)

Query: 80  WTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAI 139
           W  ++      N   +A   +++M+   + P+ F   ++LKA   ++ +     +H    
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 140 KEGLE-GSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGG 198
           K G    S+ V N+L+++Y  C         VF+ +  +N VSW +LI+           
Sbjct: 121 KFGYGVDSVTVANTLVNLYRKCG-DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMA 179

Query: 199 LGVFKEMLLEGVEMNPYSFSIAVRACASTGW-----VSFGKLIHAAVIKHGFGSNLPVMN 253
           L  F+ ML E VE  P SF++   A A + +     +  GK +HA  ++ G   N  ++N
Sbjct: 180 LEAFRCMLDEDVE--PSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKG-ELNSFIIN 236

Query: 254 SILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFSP 312
           +++ MY +   L+ +         +DL+TWNT+++   +     E L    +M  E   P
Sbjct: 237 TLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEP 296

Query: 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRG-LDGNLALANALIDMYAKCGNISDSQKI 371
           + FT +S++ AC+ L  L  G+++HA  ++ G LD N  + +AL+DMY  C  +    ++
Sbjct: 297 DGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRV 356

Query: 372 FSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS-GVRPDRIVFMAVLTACSHAGL 430
           F  M DR +  W +M+ GY  + + +EA+ LF EM +S G+  +      V+ AC  +G 
Sbjct: 357 FDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGA 416

Query: 431 VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL- 489
             +       +    ++ ++ +   ++D+  R G++  A  +   M  + D   W  ++ 
Sbjct: 417 FSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDR-DLVTWNTIIT 475

Query: 490 ----------GACKEHRLPNLGKLAALRV--LDLKPNMMGTYIILSNIYA--AEGKWEEF 535
                          H++  L + A+ R   + LKPN +    IL +  A  A  K +E 
Sbjct: 476 GYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEI 535

Query: 536 AKFRKIMRGMGSKKEVGMSWIEVRDKVCG 564
             +  I   + +   VG + +++  K CG
Sbjct: 536 HAY-AIKNNLATDVAVGSALVDMYAK-CG 562


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/552 (35%), Positives = 322/552 (58%), Gaps = 3/552 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++A  L+  Y   G + +A  LF+ MP+ +VV+W  MIAG+      ++A  +F EM+  
Sbjct: 109 LVANALVAMYSKFGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISA 168

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V+P++ T +S L +     SL     +HG  ++ G+   ++++++L+D+Y  C   +  
Sbjct: 169 GVSPDSITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKC-RDVGM 227

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  +F      + V  T +I+GY  +G     L +F+ +L E +  N  + +  + ACA 
Sbjct: 228 ACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAG 287

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              ++ GK +HA ++KHG      V ++I+DMY +   L  A Q F  M EKD + WN I
Sbjct: 288 LATLNLGKELHANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAI 347

Query: 287 IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I    ++G   E +++F +M  E  S +C + ++ ++ACA L AL  G+ +H+ +++   
Sbjct: 348 ITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAF 407

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           D  +   +ALIDMY KCGN+S ++ +F  M +++ V+W S++  YG+HGH + ++ LF +
Sbjct: 408 DSEVFAESALIDMYGKCGNLSVARCVFDMMREKNEVSWNSIIAAYGSHGHLEVSLALFHK 467

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAG 464
           M++ G++PD + F+ +L+AC HAG VD+G++YF+ M + Y +    E Y C+VDL GRAG
Sbjct: 468 MLEDGIQPDHVTFLTILSACGHAGQVDKGIQYFRCMTEEYGIPARMEHYACIVDLFGRAG 527

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           R+ EA+E IK+MPF PD+ VWG LLGAC+ H    L ++A+  +LDL P   G Y++LSN
Sbjct: 528 RLNEAFETIKNMPFSPDDGVWGTLLGACRVHGNVELAEVASRCLLDLDPENSGCYVLLSN 587

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           ++A  G+W    K R +M+  G +K  G SWIEV      F+A D     +  +Y VL  
Sbjct: 588 VHADAGQWGSVRKIRSLMKKRGVQKVPGYSWIEVNKTTHMFVAADGSHPESAQIYSVLNN 647

Query: 585 LIRHMNETAYEP 596
           L+  + +  Y P
Sbjct: 648 LLLELRKEGYCP 659



 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 134/454 (29%), Positives = 242/454 (53%), Gaps = 11/454 (2%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + ++LIK Y + G IE+AR LFD+MP +D V W VM+ G+      N A  VF +M   
Sbjct: 8   FVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMRNC 67

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           +  PN+ T +SVL  C           +HG+ I  G      V N+L+ +Y+     + +
Sbjct: 68  QTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFG-QLSD 126

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  +FN M   N V+W  +I G+  +G       +F EM+  GV  +  +F+  + +   
Sbjct: 127 ALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTE 186

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
           +  +  GK IH  +++HG   ++ + ++++D+Y +   +  A + F + T  D++    I
Sbjct: 187 SASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAI 246

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+GY  +G +++ L +F  +  E+ SPN  T  S++ ACA LA L+ G+++HA I++ GL
Sbjct: 247 ISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGL 306

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           D    + +A++DMYAKCG +  + +IF  M ++D V W +++     +G  +EAI+LF +
Sbjct: 307 DERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQ 366

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP--NKEIYG--CVVDLLG 461
           M + G+  D +   A L+AC++   +  G    K+++ + +    + E++    ++D+ G
Sbjct: 367 MGREGLSYDCVSISAALSACANLPALHHG----KAIHSFMIKGAFDSEVFAESALIDMYG 422

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           + G +  A  +   M  K +E  W  ++ A   H
Sbjct: 423 KCGNLSVARCVFDMMREK-NEVSWNSIIAAYGSH 455



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 104/354 (29%), Positives = 198/354 (55%), Gaps = 5/354 (1%)

Query: 148 YVENSLMDVYA-TCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEML 206
           +V +SL+ +YA   CI  ++AR +F+ M  K+ V W  ++ G+   G     + VF++M 
Sbjct: 8   FVGSSLIKLYAENGCI--EDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMR 65

Query: 207 LEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLS 266
               + N  +F+  +  CAS     FG  +H  VI  GF  +  V N+++ MY +F  LS
Sbjct: 66  NCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLS 125

Query: 267 DANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACA 325
           DA + F+ M + +++TWN +IAG+ ++G   E   +FS+M S   SP+  TF S + +  
Sbjct: 126 DALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVT 185

Query: 326 TLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTS 385
             A+L  G+++H  I+R G+  ++ L +ALID+Y KC ++  + KIF + ++ D+V  T+
Sbjct: 186 ESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTA 245

Query: 386 MMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYN 445
           ++ GY  +G   +A+E+F  +++  + P+ +   +VL AC+    ++ G +   ++  + 
Sbjct: 246 IISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKHG 305

Query: 446 VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN 499
           ++  + +   ++D+  + GR+  AY++ + MP K D   W  ++  C ++  P 
Sbjct: 306 LDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEK-DAVCWNAIITNCSQNGKPQ 358



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/192 (34%), Positives = 112/192 (58%), Gaps = 1/192 (0%)

Query: 244 GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMF 302
           GF  +  V +S++ +Y    C+ DA + FD+M  KD + WN ++ G+ K G  +  + +F
Sbjct: 2   GFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVF 61

Query: 303 SKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362
             M++ +  PN  TF S+++ CA+ A    G Q+H  ++  G   +  +ANAL+ MY+K 
Sbjct: 62  EDMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKF 121

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
           G +SD+ K+F+ M D ++VTW  M+ G+  +G   EA  LF EM+ +GV PD I F + L
Sbjct: 122 GQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFL 181

Query: 423 TACSHAGLVDEG 434
            + + +  + +G
Sbjct: 182 PSVTESASLKQG 193


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/565 (34%), Positives = 321/565 (56%), Gaps = 4/565 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            L T LI +    G I  AR +FD++P   +  W  +I GY+  N    A  ++  M   
Sbjct: 54  FLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLA 113

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V+P++FT   +LKAC G+  L     VH    + G +  ++V+N L+ +YA C   + +
Sbjct: 114 RVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKC-RRLGS 172

Query: 167 ARLVFNDMKW--KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           AR VF  +    +  VSWT +++ YA +G     L +F +M    V+ +  +    + A 
Sbjct: 173 ARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAF 232

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
                +  G+ IHA+V+K G      ++ S+  MY +   ++ A   FD+M   +LI WN
Sbjct: 233 TCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWN 292

Query: 285 TIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +I+GY K+G + E ++MF +M ++   P+  + TS I+ACA + +L   + ++  + R 
Sbjct: 293 AMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRS 352

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
               ++ +++ALIDM+AKCG++  ++ +F    DRD+V W++M++GYG HG  +EAI L+
Sbjct: 353 DYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLY 412

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
             M + GV P+ + F+ +L AC+H+G+V EG  +F  M D+ +NP ++ Y CV+DLLGRA
Sbjct: 413 RAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMADHKINPQQQHYACVIDLLGRA 472

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G + +AYE+IK MP +P  +VWG LL ACK+HR   LG+ AA ++  + P+  G Y+ LS
Sbjct: 473 GHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLS 532

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           N+YAA   W+  A+ R  M+  G  K+VG SW+EVR ++  F   DK     + +   +E
Sbjct: 533 NLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVE 592

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGE 608
            +   + E  +  + D  +HDL  E
Sbjct: 593 WIESRLKEGGFVANKDASLHDLNDE 617



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 134/259 (51%), Gaps = 4/259 (1%)

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
           K IHA ++  G   +  ++  ++     F  ++ A Q FD++    +  WN II GY ++
Sbjct: 38  KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRN 97

Query: 294 GS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
               + L M+S M+  R SP+ FTF  ++ AC+ L+ L  G+ VHA + R G D ++ + 
Sbjct: 98  NHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQ 157

Query: 353 NALIDMYAKCGNISDSQKIFS--EMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           N LI +YAKC  +  ++ +F    + +R +V+WT+++  Y  +G   EA+E+F +M K  
Sbjct: 158 NGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMD 217

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470
           V+PD +  ++VL A +    + +G     S+    +    ++   +  +  + G+V  A 
Sbjct: 218 VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAK 277

Query: 471 ELIKSMPFKPDESVWGPLL 489
            L   M   P+  +W  ++
Sbjct: 278 ILFDKMK-SPNLILWNAMI 295



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 104/213 (48%), Gaps = 12/213 (5%)

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           + S+I +    A L   +Q+HA ++  GL  +  L   LI   +  G+I+ ++++F ++ 
Sbjct: 24  YASLIDSATHKAQL---KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLP 80

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
              +  W +++ GY  + H ++A+ ++  M  + V PD   F  +L ACS  GL    + 
Sbjct: 81  RPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACS--GLSHLQMG 138

Query: 437 YFKSMNDYNVNPNKEIY--GCVVDLLGRAGRVKEAYELIKSMPFKPDESV--WGPLLGAC 492
            F     + +  + +++    ++ L  +  R+  A  + + +P  P+ ++  W  ++ A 
Sbjct: 139 RFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPL-PERTIVSWTAIVSAY 197

Query: 493 KEHRLP--NLGKLAALRVLDLKPNMMGTYIILS 523
            ++  P   L   + +R +D+KP+ +    +L+
Sbjct: 198 AQNGEPMEALEIFSQMRKMDVKPDWVALVSVLN 230


>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
 gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/552 (36%), Positives = 321/552 (58%), Gaps = 3/552 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + ++L+  Y   G + EAR LFD MPER++VSWT MI+GY S     +A  VF  M   
Sbjct: 148 FVGSSLVNFYCKVGCVFEARKLFDRMPERNLVSWTTMISGYASKQMAKEALGVFGLMRLV 207

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           E N N F  +SVL A    + + +   VH + +K G+   + V N+L+ +YA C  +++ 
Sbjct: 208 EGNLNEFVFTSVLSALVCPEFVDSGKQVHCVVVKNGVLEFVSVLNALVTMYAKCG-NLNY 266

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           + ++F     KN ++W+ LITGY+ +G+ +  L +F +M   G   + ++    ++AC+ 
Sbjct: 267 SLMLFEMCSDKNAITWSALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSD 326

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  GK  H  ++K G+ + +    +++DMY +F    DA + FD + E DL+ W +I
Sbjct: 327 VAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFLLEPDLVLWTSI 386

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           IAGY ++G +E  L+M+ +M+  +  PN  T  S++ AC+ LAAL  G+Q+HA  ++ GL
Sbjct: 387 IAGYVQNGKNEEALSMYGRMQMRKILPNELTMASVLKACSNLAALEQGKQIHARTIKYGL 446

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
              L++ +AL  MYAKCG++ +   IF  M  RD+V+W +M+ G   +GHG+EA+ELF+E
Sbjct: 447 GPELSIRSALSTMYAKCGSLEEGVLIFRRMLQRDIVSWNAMISGLSQNGHGREALELFEE 506

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAG 464
           M   G +PD I F+ VL+ACSH G+V  G  YF  M D + + P  E Y C+VD+L RAG
Sbjct: 507 MRLEGTKPDHITFVTVLSACSHMGIVKRGWAYFNMMFDEFCLVPRVEHYACMVDVLSRAG 566

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           ++ EA E I+S        +W  LL AC+ H    LG  A  ++++L       Y++LS+
Sbjct: 567 KLNEAKEFIESAIIDHGMCLWRILLPACRNHCNYELGAYAGEKLMELGSRESSAYVLLSS 626

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           IY A G+  +  + R++M+  G +KE G SWIE++  V  F+  D++    + + G +  
Sbjct: 627 IYTAMGRLADVVRVRRMMKVRGVRKETGCSWIELKSHVHVFVVGDQIHPQIEEIQGAIWR 686

Query: 585 LIRHMNETAYEP 596
           L +HM +  Y P
Sbjct: 687 LRKHMKDDGYRP 698



 Score =  225 bits (574), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 141/482 (29%), Positives = 245/482 (50%), Gaps = 8/482 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAG--YTSFNCHNQAWTVFVEMVR 105
           LA NLIK Y   G +  A+ +F+ +  ++VVS+  +I G  +      N    +F  M+ 
Sbjct: 45  LANNLIKFYAKCGHLHGAKLVFENLKHKNVVSYNCLIHGLSHNGSKGSNFVLELFRRMIA 104

Query: 106 NEVNPNAFTLSSVLKACK-GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
           N + P+A T   V  A    +    +A  VH + IK      ++V +SL++ Y       
Sbjct: 105 NNILPDAHTFPGVFTAAALNLGCNFDARQVHVLGIKTASIDDVFVGSSLVNFYCKVGCVF 164

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           + AR +F+ M  +N VSWTT+I+GYA        LGVF  M L    +N + F+  + A 
Sbjct: 165 E-ARKLFDRMPERNLVSWTTMISGYASKQMAKEALGVFGLMRLVEGNLNEFVFTSVLSAL 223

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
               +V  GK +H  V+K+G    + V+N+++ MY +   L+ +   F+  ++K+ ITW+
Sbjct: 224 VCPEFVDSGKQVHCVVVKNGVLEFVSVLNALVTMYAKCGNLNYSLMLFEMCSDKNAITWS 283

Query: 285 TIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +I GY ++G S + L +FSKM    F P+ FT   ++ AC+ +AA+  G+Q H  +++ 
Sbjct: 284 ALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKS 343

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G +  +  A AL+DMYAK G   D++K F  + + DLV WTS++ GY  +G  +EA+ ++
Sbjct: 344 GYETQIYTATALVDMYAKFGFTGDARKGFDFLLEPDLVLWTSIIAGYVQNGKNEEALSMY 403

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
             M    + P+ +   +VL ACS+   +++G +       Y + P   I   +  +  + 
Sbjct: 404 GRMQMRKILPNELTMASVLKACSNLAALEQGKQIHARTIKYGLGPELSIRSALSTMYAKC 463

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKE--HRLPNLGKLAALRVLDLKPNMMGTYII 521
           G ++E   + + M  + D   W  ++    +  H    L     +R+   KP+ +    +
Sbjct: 464 GSLEEGVLIFRRM-LQRDIVSWNAMISGLSQNGHGREALELFEEMRLEGTKPDHITFVTV 522

Query: 522 LS 523
           LS
Sbjct: 523 LS 524



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 130/454 (28%), Positives = 227/454 (50%), Gaps = 28/454 (6%)

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIK-EGLEGSIYVENSLMDVYATCCISMDNAR 168
           P   +  ++L      KSL    ++H   IK   L    Y+ N+L+  YA C   +  A+
Sbjct: 5   PQNRSFYNLLIQYADQKSLKKGQILHAHIIKIPYLSSCNYLANNLIKFYAKCG-HLHGAK 63

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGG--LGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           LVF ++K KN VS+  LI G +H+G+      L +F+ M+   +  + ++F     A A 
Sbjct: 64  LVFENLKHKNVVSYNCLIHGLSHNGSKGSNFVLELFRRMIANNILPDAHTFPGVFTAAAL 123

Query: 227 TGWVSF-GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               +F  + +H   IK     ++ V +S+++ YC+  C+ +A + FD M E++L++W T
Sbjct: 124 NLGCNFDARQVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVSWTT 183

Query: 286 IIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I+GY  K  + E L +F  M+    + N F FTS+++A      +  G+QVH  +V+ G
Sbjct: 184 MISGYASKQMAKEALGVFGLMRLVEGNLNEFVFTSVLSALVCPEFVDSGKQVHCVVVKNG 243

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           +   +++ NAL+ MYAKCGN++ S  +F   SD++ +TW++++ GY   G   +A++LF 
Sbjct: 244 VLEFVSVLNALVTMYAKCGNLNYSLMLFEMCSDKNAITWSALITGYSQAGDSHKALKLFS 303

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE--IY--GCVVDL- 459
           +M  +G  P     + VL ACS    ++EG    K  + Y +    E  IY    +VD+ 
Sbjct: 304 KMHYAGFVPSEFTLVGVLKACSDVAAIEEG----KQTHGYLLKSGYETQIYTATALVDMY 359

Query: 460 --LGRAGRVKEAYELIKSMPFKPDESVWGPLLGAC-----KEHRLPNLGKLAALRVLDLK 512
              G  G  ++ ++ +     +PD  +W  ++         E  L   G++   ++L  +
Sbjct: 360 AKFGFTGDARKGFDFL----LEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRKILPNE 415

Query: 513 PNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546
             M       SN+ A E   +  A  R I  G+G
Sbjct: 416 LTMASVLKACSNLAALEQGKQIHA--RTIKYGLG 447


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/551 (36%), Positives = 329/551 (59%), Gaps = 10/551 (1%)

Query: 60  GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119
           GLI+  R +FD+M  RD VSW  MI GY+    + ++  +F+EMV N+  P+  T++S+L
Sbjct: 325 GLID-GRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMV-NQFKPDLLTITSIL 382

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179
           +AC  +  L     VH   I  G E      N L+++YA C  ++  ++ VF+ MK K+ 
Sbjct: 383 QACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCG-NLLASQEVFSGMKCKDS 441

Query: 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAA 239
           VSW ++I  Y  +G+    + +FK M+   V+ +  ++ + +      G +  GK +H  
Sbjct: 442 VSWNSMINVYIQNGSFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCD 500

Query: 240 VIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSEC- 298
           + K GF SN+ V N+++DMY +   + D+ + F+ M  +D+ITWNTIIA    S   +C 
Sbjct: 501 LAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHS--EDCN 558

Query: 299 --LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALI 356
             L M S+M++E  +P+  T  SI+  C+ LAA   G+++H  I + GL+ ++ + N LI
Sbjct: 559 LGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLI 618

Query: 357 DMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI 416
           +MY+KCG++ +S ++F  M  +D+VTWT+++   G +G GK+A+  F EM  +G+ PD +
Sbjct: 619 EMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHV 678

Query: 417 VFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKS 475
            F+A++ ACSH+GLV+EGL YF  M  DY + P  E Y CVVDLL R+  + +A + I S
Sbjct: 679 AFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILS 738

Query: 476 MPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEF 535
           MP KPD S+WG LL AC+      + +  + R+++L P+  G Y+++SN+YAA GKW++ 
Sbjct: 739 MPLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTGYYVLVSNVYAALGKWDQV 798

Query: 536 AKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYE 595
              RK ++  G KK+ G SW+E+++KV  F    K     + V  +L ML   M +  Y 
Sbjct: 799 RSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFSEQFEEVNKLLGMLAGLMAKEGYI 858

Query: 596 PDIDCLIHDLE 606
            ++  ++HD++
Sbjct: 859 ANLQFVLHDID 869



 Score =  246 bits (628), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 153/503 (30%), Positives = 266/503 (52%), Gaps = 15/503 (2%)

Query: 73  PERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAA 132
           P  +V  W  +I   T     ++A +++ E  R  + P+ +T  SV+ AC G+     A 
Sbjct: 135 PSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 194

Query: 133 LVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHS 192
            +H   +  G    +Y+ N+L+D+Y      +D AR VF +M  ++ VSW +LI+GY  +
Sbjct: 195 SIHDRVLXMGFGSDLYIGNALIDMYCRFN-DLDKARKVFEEMPLRDVVSWNSLISGYNAN 253

Query: 193 GNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVM 252
           G     L ++      GV  + Y+ S  +RAC   G V  G +IH  + K G   ++ V 
Sbjct: 254 GYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVN 313

Query: 253 NSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFS 311
           N +L MYC+F+ L D  + FD+M  +D ++WNT+I GY + G   E + +F +M ++ F 
Sbjct: 314 NGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FK 372

Query: 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKI 371
           P+  T TSI+ AC  L  L  G+ VH  ++  G + +   +N LI+MYAKCGN+  SQ++
Sbjct: 373 PDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEV 432

Query: 372 FSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLV 431
           FS M  +D V+W SM+  Y  +G   EA++LF +M+K+ V+PD + ++ +L+  +  G +
Sbjct: 433 FSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDL 491

Query: 432 DEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
             G +    +     N N  +   +VD+  + G + ++ ++ ++M  + D   W  ++ +
Sbjct: 492 XLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKAR-DIITWNTIIAS 550

Query: 492 CKEHRLPNLG--KLAALRVLDLKPNM--MGTYIILSNIYAAEGKWEEF--AKFRKIMRGM 545
           C      NLG   ++ +R   + P+M  M + + + ++ AA+ + +E     F+    G+
Sbjct: 551 CVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFK---LGL 607

Query: 546 GSKKEVGMSWIEVRDKVCGFIAN 568
            S   VG   IE+  K CG + N
Sbjct: 608 ESDVPVGNVLIEMYSK-CGSLRN 629



 Score =  228 bits (582), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 127/444 (28%), Positives = 233/444 (52%), Gaps = 9/444 (2%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y     +++AR +F+EMP RDVVSW  +I+GY +    N+A  ++       V P+
Sbjct: 215 LIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPD 274

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
           ++T+SSVL+AC G+ S+    ++HG+  K G++  + V N L+ +Y      +D  R +F
Sbjct: 275 SYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRR-IF 333

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA--VRACASTGW 229
           + M  ++ VSW T+I GY+  G     + +F EM+    +  P   +I   ++AC   G 
Sbjct: 334 DKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMV---NQFKPDLLTITSILQACGHLGD 390

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           + FGK +H  +I  G+  +    N +++MY +   L  + + F  M  KD ++WN++I  
Sbjct: 391 LEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINV 450

Query: 290 YEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           Y ++GS  E + +F  MK++   P+  T+  +++    L  L  G+++H  + + G + N
Sbjct: 451 YIQNGSFDEAMKLFKMMKTD-VKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSN 509

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           + ++N L+DMYAKCG + DS K+F  M  RD++TW +++            + +   M  
Sbjct: 510 IVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRT 569

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKE 468
            GV PD    +++L  CS      +G +    +    +  +  +   ++++  + G ++ 
Sbjct: 570 EGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRN 629

Query: 469 AYELIKSMPFKPDESVWGPLLGAC 492
           ++++ K M  K D   W  L+ AC
Sbjct: 630 SFQVFKLMKTK-DVVTWTALISAC 652



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 115/220 (52%), Gaps = 2/220 (0%)

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRF-DCLSDANQYFDEM 275
           FS   RA AS    +    +H+ +I  G   ++     ++  Y  F D  S  + +    
Sbjct: 75  FSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLAS 134

Query: 276 TEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334
              ++  WN+II     +G  SE L+++S+ +  R  P+ +TF S+I ACA L      +
Sbjct: 135 PSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 194

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
            +H  ++  G   +L + NALIDMY +  ++  ++K+F EM  RD+V+W S++ GY A+G
Sbjct: 195 SIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 254

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434
           +  EA+E++      GV PD     +VL AC   G V+EG
Sbjct: 255 YWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEG 294


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/564 (36%), Positives = 329/564 (58%), Gaps = 4/564 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + L  +L+  Y   G ++ A  LFD MP+R++VSWT MI+G +  +  ++A   F  M  
Sbjct: 40  TFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRI 99

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
               P  F  SS ++AC  + S+     +H +A+K G+   ++V ++L D+Y+ C    D
Sbjct: 100 CGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFD 159

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
             + VF +M  K++VSWT +I GY+  G     L  FK+M+ E V ++ +     + AC 
Sbjct: 160 ACK-VFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACG 218

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE-KDLITWN 284
           +     FG+ +H++V+K GF S++ V N++ DMY +   +  A+  F   +E ++++++ 
Sbjct: 219 ALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYT 278

Query: 285 TIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +I GY E     + L++F +++ +   PN FTF+S+I ACA  AAL  G Q+HA +++ 
Sbjct: 279 CLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKI 338

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
             D +  +++ L+DMY KCG +  + + F E+ D   + W S++  +G HG GK+AI++F
Sbjct: 339 NFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIF 398

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGR 462
           + MV  GV+P+ I F+++LT CSHAGLV+EGL YF SM+  Y V P +E Y CV+DLLGR
Sbjct: 399 ERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGR 458

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AGR+KEA E I  MPF+P+   W   LGAC+ H    +GKLAA +++ L+P   G  ++L
Sbjct: 459 AGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLL 518

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           SNIYA E +WE+    R  MR    KK  G SW++V  K   F A D        +Y  L
Sbjct: 519 SNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKL 578

Query: 583 EMLIRHMNETAYEPDIDCLIHDLE 606
           + L+  +    Y P  D +  D++
Sbjct: 579 DTLLDQIKAAGYVPRTDSVPLDMD 602



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 130/250 (52%), Gaps = 1/250 (0%)

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           ++  A T  +  GK +HA +I  G+     + N +++MY +   L  A + FD M +++L
Sbjct: 12  IQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNL 71

Query: 281 ITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           ++W  +I+G  + S  SE +  F  M+     P  F F+S I ACA+L ++  G+Q+H  
Sbjct: 72  VSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCL 131

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
            ++ G+   L + + L DMY+KCG + D+ K+F EM  +D V+WT+M+ GY   G  +EA
Sbjct: 132 ALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEA 191

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL 459
           +  F +M+   V  D+ V  + L AC        G     S+       +  +   + D+
Sbjct: 192 LLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDM 251

Query: 460 LGRAGRVKEA 469
             +AG ++ A
Sbjct: 252 YSKAGDMESA 261



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 1/170 (0%)

Query: 320 IIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD 379
           +I   A    L  G+Q+HA ++  G      L N L++MY+KCG +  + K+F  M  R+
Sbjct: 11  VIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRN 70

Query: 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439
           LV+WT+M+ G   +    EAI  F  M   G  P +  F + + AC+  G ++ G +   
Sbjct: 71  LVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHC 130

Query: 440 SMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
               + +     +   + D+  + G + +A ++ + MP K DE  W  ++
Sbjct: 131 LALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCK-DEVSWTAMI 179


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/582 (36%), Positives = 323/582 (55%), Gaps = 33/582 (5%)

Query: 60  GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119
           G +  A  LF+ + + +   W  MI G +  +    A   +V M+   V PN++T   +L
Sbjct: 80  GNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLL 139

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA--------------------- 158
           K+C  + +      +HG  +K GLE   +V  SL+++YA                     
Sbjct: 140 KSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAV 199

Query: 159 --TCCIS-------MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG 209
             T  I+       +D+AR +F ++  ++ VSW  +I GYA SG     L  F+EM    
Sbjct: 200 SFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRAN 259

Query: 210 VEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDAN 269
           V  N  +    + ACA +G +  G  + + +  HG GSNL ++N+++DMY +   L  A 
Sbjct: 260 VAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKAR 319

Query: 270 QYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLA 328
             F+ + EKD+I+WN +I GY    S  E L +F KM+     PN  TF SI+ ACA L 
Sbjct: 320 DLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLG 379

Query: 329 ALSCGQQVHAGIVRRGLD-GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMM 387
           AL  G+ +HA I ++ L   N +L  +LIDMYAKCGNI  ++++F+ M  + L +W +M+
Sbjct: 380 ALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMI 439

Query: 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNV 446
            G   HGH   A+ELF +M   G  PD I F+ VL+ACSHAGLV+ G + F SM  DY++
Sbjct: 440 SGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDI 499

Query: 447 NPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAAL 506
           +P  + YGC++DLLGRAG   EA  L+K+M  KPD ++WG LLGAC+ H    LG+ AA 
Sbjct: 500 SPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAK 559

Query: 507 RVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFI 566
            + +L+P   G Y++LSNIYA  G+W++ A+ R  +   G KK  G S IEV   V  F+
Sbjct: 560 HLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFL 619

Query: 567 ANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
             DK+   +Q +Y +L+ + + + +  + PD   +++D++ E
Sbjct: 620 VGDKVHEQSQDIYKMLDEIDQLLEKAGHVPDTSEVLYDMDEE 661



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 127/417 (30%), Positives = 200/417 (47%), Gaps = 23/417 (5%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T LI  Y   G +++AR LF+E+P RD VSW  MIAGY       +A   F EM R  V 
Sbjct: 202 TALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVA 261

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           PN  T+ +VL AC    SL     V       GL  ++ + N+L+D+Y+ C   +D AR 
Sbjct: 262 PNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCG-DLDKARD 320

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           +F  +  K+ +SW  +I GY+H  +    L +F++M    VE N  +F   + ACA  G 
Sbjct: 321 LFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGA 380

Query: 230 VSFGKLIHAAVIKHGFG-SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
           +  GK IHA + K   G +N  +  S++DMY +   +  A Q F  M  K L +WN +I+
Sbjct: 381 LDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMIS 440

Query: 289 GYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-GLD 346
           G    G +   L +F +M+ E F P+  TF  +++AC+    +  G+Q  + +V    + 
Sbjct: 441 GLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDIS 500

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHGH-------GKE 398
             L     +ID+  + G   +++ +   M  + D   W S++     HG+        K 
Sbjct: 501 PKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKH 560

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455
             EL  E       P   V ++ + A   AG  D+  +    +ND  +   K++ GC
Sbjct: 561 LFELEPE------NPGAYVLLSNIYAT--AGRWDDVARIRTKLNDKGM---KKVPGC 606



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 139/283 (49%), Gaps = 6/283 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L   LI  Y   G +++AR LF+ + E+D++SW VMI GY+  N + +A  +F +M ++ 
Sbjct: 301 LVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSN 360

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLE-GSIYVENSLMDVYATCCISMDN 166
           V PN  T  S+L AC  + +L     +H    K+ L   +  +  SL+D+YA C  +++ 
Sbjct: 361 VEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCG-NIEA 419

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A+ VF  MK K+  SW  +I+G A  G+    L +F++M  EG E +  +F   + AC+ 
Sbjct: 420 AKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSH 479

Query: 227 TGWVSFGKLIHAAVIK-HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLITWN 284
            G V  G+   +++++ +     L     ++D+  R     +A      M  K D   W 
Sbjct: 480 AGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWG 539

Query: 285 TIIAGYEKSGSSECLNMFSK--MKSERFSPNCFTFTSIIAACA 325
           +++      G+ E     +K   + E  +P  +   S I A A
Sbjct: 540 SLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATA 582


>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Vitis vinifera]
          Length = 825

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/553 (38%), Positives = 319/553 (57%), Gaps = 5/553 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y     ++  R LFD+M  ++++SWT MI+GY   +   +A  +F EM R    P+
Sbjct: 271 LIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPD 330

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
            F  +SVL +C   ++L     VH   IK  LE   +V+N L+D+YA   + +D A+ VF
Sbjct: 331 GFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLID-AKKVF 389

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           + M  +N +S+  +I GY+        L +F EM +     +  +F   +   AS   + 
Sbjct: 390 DVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALE 449

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
             K IH  +IK G   +L   ++++D+Y +   + DA   F+EM EKD++ WN +  GY 
Sbjct: 450 LSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYT 509

Query: 292 KS-GSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           +   + E L ++S ++  R  PN FTF ++I A + LA+L  GQQ H  +V+ GLD    
Sbjct: 510 QHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPF 569

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           + NAL+DMYAKCG+I +++K+F+    RD+V W SM+  +  HG  +EA+ +F EM+K G
Sbjct: 570 VTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEG 629

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470
           ++P+ + F+AVL+ACSHAG V++GL +F SM  + + P  E Y CVV LLGR+G++ EA 
Sbjct: 630 IQPNYVTFVAVLSACSHAGRVEDGLNHFNSMPGFGIKPGTEHYACVVSLLGRSGKLFEAK 689

Query: 471 ELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEG 530
           E I+ MP +P   VW  LL AC+      LGK AA   +   P   G+YI+LSNI+A++G
Sbjct: 690 EFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKG 749

Query: 531 KWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYG-VLEMLIRHM 589
            W +  K R  M      KE G SWIEV +KV  FIA D   +H +   G VL++LI+H+
Sbjct: 750 MWADVKKVRDRMDSSEVVKEPGRSWIEVNNKVNVFIARDT--THREADIGSVLDILIQHI 807

Query: 590 NETAYEPDIDCLI 602
               Y PD   L+
Sbjct: 808 KGAGYVPDATALL 820



 Score =  267 bits (683), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 151/504 (29%), Positives = 269/504 (53%), Gaps = 6/504 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + T+LI  Y   G IEEAR +FD++ E+  V+WT +IAGYT       +  +F +M    
Sbjct: 166 VGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETN 225

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V P+ + +SSVL AC  ++ L     +H   ++ G E  + V N L+D Y T C  +   
Sbjct: 226 VVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFY-TKCNRVKAG 284

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R +F+ M  KN +SWTT+I+GY  +   +  + +F EM   G + + ++ +  + +C S 
Sbjct: 285 RKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSR 344

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  G+ +HA  IK    S+  V N ++DMY + + L DA + FD M E+++I++N +I
Sbjct: 345 EALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMI 404

Query: 288 AGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            GY      SE L +F +M+   F P+  TF S++   A+L AL   +Q+H  I++ G+ 
Sbjct: 405 EGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFGVS 464

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            +L   +ALID+Y+KC  + D++ +F EM+++D+V W +M  GY  H   +EA++L+  +
Sbjct: 465 LDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTL 524

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
             S  +P+   F A++TA S+   +  G ++   +    ++    +   +VD+  + G +
Sbjct: 525 QFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSI 584

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNMMGTYIILSN 524
           +EA ++  S  ++ D   W  ++    +H      LG    +    ++PN + T++ + +
Sbjct: 585 EEARKMFNSSIWR-DVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYV-TFVAVLS 642

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSK 548
             +  G+ E+       M G G K
Sbjct: 643 ACSHAGRVEDGLNHFNSMPGFGIK 666



 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 143/488 (29%), Positives = 260/488 (53%), Gaps = 16/488 (3%)

Query: 32  SSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFN 91
           S +QSD        + LA  LI        ++ AR +FD+MP +++++W+ M++ Y+   
Sbjct: 56  SGLQSD--------TFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQG 107

Query: 92  CHNQAWTVFVEMVRNE-VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVE 150
              +A  VFV++ R    +PN F L+SV++AC  +  +   A +HG  ++ G +  +YV 
Sbjct: 108 YSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVG 167

Query: 151 NSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGV 210
            SL+D Y+    +++ ARLVF+ +  K  V+WTT+I GY   G     L +F +M    V
Sbjct: 168 TSLIDFYSKNG-NIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNV 226

Query: 211 EMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQ 270
             + Y  S  + AC+   ++  GK IHA V++ G   ++ V+N ++D Y + + +    +
Sbjct: 227 VPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRK 286

Query: 271 YFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAA 329
            FD+M  K++I+W T+I+GY + S   E + +F +M    + P+ F  TS++ +C +  A
Sbjct: 287 LFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREA 346

Query: 330 LSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIG 389
           L  G+QVHA  ++  L+ +  + N LIDMYAK   + D++K+F  M++++++++ +M+ G
Sbjct: 347 LEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEG 406

Query: 390 YGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN 449
           Y +     EA+ELF EM      P  + F+++L   +    ++   +    +  + V+ +
Sbjct: 407 YSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFGVSLD 466

Query: 450 KEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN---LGKLAAL 506
                 ++D+  +   VK+A  + + M  K D  VW  +     +H L N   L   + L
Sbjct: 467 LFAGSALIDVYSKCSYVKDARHVFEEMNEK-DIVVWNAMFFGYTQH-LENEEALKLYSTL 524

Query: 507 RVLDLKPN 514
           +    KPN
Sbjct: 525 QFSRQKPN 532



 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 118/426 (27%), Positives = 230/426 (53%), Gaps = 9/426 (2%)

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS--MD 165
           + P     +++L+       + +  ++HG  I  GL+   ++ N L++V   C  S  +D
Sbjct: 23  LRPKRREFANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINV---CSKSDRVD 79

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAVRAC 224
           NAR+VF+ M  KN ++W+++++ Y+  G     L VF ++  + G   N +  +  +RAC
Sbjct: 80  NARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRAC 139

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
              G V  G  +H  V++ GF  ++ V  S++D Y +   + +A   FD+++EK  +TW 
Sbjct: 140 TQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWT 199

Query: 285 TIIAGYEKSGSSEC-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           TIIAGY K G S   L +F++M+     P+ +  +S+++AC+ L  L  G+Q+HA ++RR
Sbjct: 200 TIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRR 259

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G + ++++ N LID Y KC  +   +K+F +M  +++++WT+M+ GY  +    EA++LF
Sbjct: 260 GTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLF 319

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
            EM + G +PD     +VLT+C     +++G +        N+  ++ +   ++D+  ++
Sbjct: 320 GEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKS 379

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN-LGKLAALRVLDLKPNMMGTYIIL 522
             + +A ++   M  +   S    + G   + +L   L     +RV    P+++ T++ L
Sbjct: 380 NLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLL-TFVSL 438

Query: 523 SNIYAA 528
             + A+
Sbjct: 439 LGVSAS 444


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/562 (35%), Positives = 326/562 (58%), Gaps = 3/562 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++ T  +  Y     + +A+ LF+ +P  ++ S+  +I GY   +   +A  +F  + ++
Sbjct: 311 VIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKS 370

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            +  +  +LS   +AC  +K       VHG+++K   + +I V N+++D+Y  C  ++  
Sbjct: 371 GLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCG-ALVE 429

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A LVF +M  ++ VSW  +I  +  +GN    L +F  ML  G+E + +++   ++ACA 
Sbjct: 430 ACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAG 489

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              ++ G  IH  +IK   G +  V  +++DMY +   +  A +  D + E+ +++WN I
Sbjct: 490 WQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAI 549

Query: 287 IAGYE-KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+G+  +  S E    FSKM      P+ FT+ +I+  CA L  +  G+Q+HA I+++ L
Sbjct: 550 ISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKEL 609

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             +  +++ L+DMY+KCGN+ D Q IF +  +RD VTW +M+ GY  HG G+EA+++F+ 
Sbjct: 610 QSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEY 669

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAG 464
           M    V+P+   F+AVL AC H GLV++GL YF SM ++Y ++P  E Y CVVD++GR+G
Sbjct: 670 MQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSG 729

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           +V +A ELI+ MPF+ D  +W  LL  CK H    + + AA  +L L+P     Y++LSN
Sbjct: 730 QVSKALELIEGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSN 789

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           IYA  G W E  K RK+MR  G KKE G SWIE++ +V  F+  DK    ++ +Y  L++
Sbjct: 790 IYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFLVGDKAHPRSKEIYENLDV 849

Query: 585 LIRHMNETAYEPDIDCLIHDLE 606
           L   M    Y PD D +++D E
Sbjct: 850 LTDEMKWVGYMPDTDFILNDDE 871



 Score =  233 bits (593), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 129/433 (29%), Positives = 233/433 (53%), Gaps = 2/433 (0%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P+  ++    ++  Y   G I  A+ LFD MPERDVVSW  +I+GY     H +   VF
Sbjct: 103 MPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVF 162

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
           ++M R     +  T + VLK+C  ++       +HG+A+K G +  +   ++L+D+YA C
Sbjct: 163 LQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKC 222

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
              +D +   F+ M  KN VSW+ +I G   + +  GGL +FKEM   GV ++  +F+  
Sbjct: 223 -KKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASV 281

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
            R+CA    +  G  +H   +K  FG+++ +  + LDMY + + LSDA + F+ +   +L
Sbjct: 282 FRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNL 341

Query: 281 ITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
            ++N II GY +S    E L MF  ++      +  + +    ACA +     G QVH  
Sbjct: 342 QSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGL 401

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
            ++     N+ +ANA++DMY KCG + ++  +F EM  RD V+W +++  +  +G+ ++ 
Sbjct: 402 SMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKT 461

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL 459
           + LF  M++SG+ PD   + +VL AC+    ++ G++    +    +  +  +   ++D+
Sbjct: 462 LSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDM 521

Query: 460 LGRAGRVKEAYEL 472
             + G +++A +L
Sbjct: 522 YSKCGMMEKAEKL 534



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 123/504 (24%), Positives = 227/504 (45%), Gaps = 47/504 (9%)

Query: 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFND 173
           T S + + C   K+L      H   I    + +++V N L+ +Y  C   ++ A  VF+ 
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCS-DLEFAFKVFDG 102

Query: 174 MKWKNDVSWTTL-------------------------------ITGYAHSGNGYGGLGVF 202
           M  ++ VSW  +                               I+GY H+G+    + VF
Sbjct: 103 MPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVF 162

Query: 203 KEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRF 262
            +M   G   +  +F++ +++C+S      G  IH   +K GF  ++   +++LDMY + 
Sbjct: 163 LQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKC 222

Query: 263 DCLSDANQYFDEMTEKDLITWNTIIAG-YEKSGSSECLNMFSKMKSERFSPNCFTFTSII 321
             L  + Q+F  M EK+ ++W+ IIAG  +       L +F +M+      +  TF S+ 
Sbjct: 223 KKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVF 282

Query: 322 AACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLV 381
            +CA L+AL  G Q+H   ++     ++ +  A +DMY KC N+SD+QK+F+ + + +L 
Sbjct: 283 RSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQ 342

Query: 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441
           ++ ++++GY     G EA+ +F  + KSG+  D +       AC+      EGL+     
Sbjct: 343 SYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLS 402

Query: 442 NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLG 501
                  N  +   ++D+ G+ G + EA  + + M  + D   W  ++ A +++   N  
Sbjct: 403 MKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSR-DAVSWNAIIAAHEQN--GNEE 459

Query: 502 KLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEF-----AKFRKIMRGMGSKKEVGMSWI 556
           K  +L V  L+  M        ++  A   W+          R I   +G    VG++ I
Sbjct: 460 KTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALI 519

Query: 557 EVRDKVCGFIA-----NDKMGSHT 575
           ++  K CG +      +D++   T
Sbjct: 520 DMYSK-CGMMEKAEKLHDRLAEQT 542



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 132/254 (51%), Gaps = 3/254 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S +   LI  Y   G++E+A  L D + E+ VVSW  +I+G++      +A   F +M+ 
Sbjct: 512 SFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLE 571

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             V+P+ FT +++L  C  + ++     +H   IK+ L+   Y+ ++L+D+Y+ C  +M 
Sbjct: 572 MGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCG-NMQ 630

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           + +L+F     ++ V+W  ++ GYA  G G   L +F+ M LE V+ N  +F   +RAC 
Sbjct: 631 DFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACG 690

Query: 226 STGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLITW 283
             G V  G    H+ +  +G    L   + ++D+  R   +S A +  + M  E D + W
Sbjct: 691 HMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIW 750

Query: 284 NTIIAGYEKSGSSE 297
            T+++  +  G+ E
Sbjct: 751 RTLLSICKIHGNVE 764


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/551 (36%), Positives = 329/551 (59%), Gaps = 10/551 (1%)

Query: 60  GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119
           GLI+  R +FD+M  RD VSW  MI GY+    + ++  +F+EMV N+  P+  T++S+L
Sbjct: 266 GLID-GRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMV-NQFKPDLLTITSIL 323

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179
           +AC  +  L     VH   I  G E      N L+++YA C  ++  ++ VF+ MK K+ 
Sbjct: 324 QACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCG-NLLASQEVFSGMKCKDS 382

Query: 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAA 239
           VSW ++I  Y  +G+    + +FK M+   V+ +  ++ + +      G +  GK +H  
Sbjct: 383 VSWNSMINVYIQNGSFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCD 441

Query: 240 VIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSEC- 298
           + K GF SN+ V N+++DMY +   + D+ + F+ M  +D+ITWNTIIA    S   +C 
Sbjct: 442 LAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHS--EDCN 499

Query: 299 --LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALI 356
             L M S+M++E  +P+  T  SI+  C+ LAA   G+++H  I + GL+ ++ + N LI
Sbjct: 500 LGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLI 559

Query: 357 DMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI 416
           +MY+KCG++ +S ++F  M  +D+VTWT+++   G +G GK+A+  F EM  +G+ PD +
Sbjct: 560 EMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHV 619

Query: 417 VFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKS 475
            F+A++ ACSH+GLV+EGL YF  M  DY + P  E Y CVVDLL R+  + +A + I S
Sbjct: 620 AFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILS 679

Query: 476 MPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEF 535
           MP KPD S+WG LL AC+      + +  + R+++L P+  G Y+++SNIYAA GKW++ 
Sbjct: 680 MPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQV 739

Query: 536 AKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYE 595
              RK ++  G KK+ G SW+E+++KV  F    K     + V  +L ML   M +  Y 
Sbjct: 740 RSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLLGMLAGLMAKEGYI 799

Query: 596 PDIDCLIHDLE 606
            ++  ++HD++
Sbjct: 800 ANLQFVLHDID 810



 Score =  246 bits (627), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 153/503 (30%), Positives = 266/503 (52%), Gaps = 15/503 (2%)

Query: 73  PERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAA 132
           P  +V  W  +I   T     ++A +++ E  R  + P+ +T  SV+ AC G+     A 
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 135

Query: 133 LVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHS 192
            +H   +  G    +Y+ N+L+D+Y      +D AR VF +M  ++ VSW +LI+GY  +
Sbjct: 136 SIHDRVLDMGFGSDLYIGNALIDMYCRFN-DLDKARKVFEEMPLRDVVSWNSLISGYNAN 194

Query: 193 GNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVM 252
           G     L ++      GV  + Y+ S  +RAC   G V  G +IH  + K G   ++ V 
Sbjct: 195 GYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVN 254

Query: 253 NSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFS 311
           N +L MYC+F+ L D  + FD+M  +D ++WNT+I GY + G   E + +F +M ++ F 
Sbjct: 255 NGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FK 313

Query: 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKI 371
           P+  T TSI+ AC  L  L  G+ VH  ++  G + +   +N LI+MYAKCGN+  SQ++
Sbjct: 314 PDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEV 373

Query: 372 FSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLV 431
           FS M  +D V+W SM+  Y  +G   EA++LF +M+K+ V+PD + ++ +L+  +  G +
Sbjct: 374 FSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDL 432

Query: 432 DEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
             G +    +     N N  +   +VD+  + G + ++ ++ ++M  + D   W  ++ +
Sbjct: 433 HLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKAR-DIITWNTIIAS 491

Query: 492 CKEHRLPNLG--KLAALRVLDLKPNM--MGTYIILSNIYAAEGKWEEF--AKFRKIMRGM 545
           C      NLG   ++ +R   + P+M  M + + + ++ AA+ + +E     F+    G+
Sbjct: 492 CVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFK---LGL 548

Query: 546 GSKKEVGMSWIEVRDKVCGFIAN 568
            S   VG   IE+  K CG + N
Sbjct: 549 ESDVPVGNVLIEMYSK-CGSLRN 570



 Score =  228 bits (582), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 127/444 (28%), Positives = 233/444 (52%), Gaps = 9/444 (2%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y     +++AR +F+EMP RDVVSW  +I+GY +    N+A  ++       V P+
Sbjct: 156 LIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPD 215

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
           ++T+SSVL+AC G+ S+    ++HG+  K G++  + V N L+ +Y      +D  R +F
Sbjct: 216 SYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRR-IF 274

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA--VRACASTGW 229
           + M  ++ VSW T+I GY+  G     + +F EM+    +  P   +I   ++AC   G 
Sbjct: 275 DKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMV---NQFKPDLLTITSILQACGHLGD 331

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           + FGK +H  +I  G+  +    N +++MY +   L  + + F  M  KD ++WN++I  
Sbjct: 332 LEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINV 391

Query: 290 YEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           Y ++GS  E + +F  MK++   P+  T+  +++    L  L  G+++H  + + G + N
Sbjct: 392 YIQNGSFDEAMKLFKMMKTD-VKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSN 450

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           + ++N L+DMYAKCG + DS K+F  M  RD++TW +++            + +   M  
Sbjct: 451 IVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRT 510

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKE 468
            GV PD    +++L  CS      +G +    +    +  +  +   ++++  + G ++ 
Sbjct: 511 EGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRN 570

Query: 469 AYELIKSMPFKPDESVWGPLLGAC 492
           ++++ K M  K D   W  L+ AC
Sbjct: 571 SFQVFKLMKTK-DVVTWTALISAC 593



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 115/220 (52%), Gaps = 2/220 (0%)

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRF-DCLSDANQYFDEM 275
           FS   RA AS    +    +H+ +I  G   ++     ++  Y  F D  S  + +    
Sbjct: 16  FSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLAS 75

Query: 276 TEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334
              ++  WN+II     +G  SE L+++S+ +  R  P+ +TF S+I ACA L      +
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 135

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
            +H  ++  G   +L + NALIDMY +  ++  ++K+F EM  RD+V+W S++ GY A+G
Sbjct: 136 SIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 195

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434
           +  EA+E++      GV PD     +VL AC   G V+EG
Sbjct: 196 YWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEG 235


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/558 (37%), Positives = 330/558 (59%), Gaps = 17/558 (3%)

Query: 62  IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM-VRNEVNPNAFTLSSVLK 120
           +E AR +FD+M E++VV+WT+MI     +  +++A  +F+EM V +   P+ FTL+ ++ 
Sbjct: 211 LESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLIS 270

Query: 121 ACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDV 180
            C  ++ LS    +H   I+ GL   + V  SL+D+YA C + +  AR VF+ M+  N +
Sbjct: 271 VCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGL-VQEARKVFDGMREHNVM 329

Query: 181 SWTTLITGYAHSGNGYG--GLGVFKEMLLEG-VEMNPYSFSIAVRACASTGWVSFGKLIH 237
           SWT L+ GY   G GY    + +F  MLL+G V  N ++FS  ++ACAS     FG+ +H
Sbjct: 330 SWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVH 389

Query: 238 AAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE 297
              IK G  +   V N ++ +Y +   +  A + FD + EK+L++   +     K     
Sbjct: 390 GQTIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNVKD---- 445

Query: 298 CLNMFSKMKSER------FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLAL 351
             N+ S+   +R         + FT+ S+++  A +  +  G+Q+HA +V+ G   +L++
Sbjct: 446 -FNLNSEQDLDREVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDLSV 504

Query: 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411
            NALI MY+KCGN   + ++F++M D +++TWTS++ G+  HG   +A+ELF  M+++GV
Sbjct: 505 NNALISMYSKCGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNMLETGV 564

Query: 412 RPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAY 470
           +P+ + ++AVL+ACSH GL+DE  K+F SM D + + P  E Y C+VDLLGR+G + EA 
Sbjct: 565 KPNDVTYIAVLSACSHVGLIDEAWKHFTSMRDNHGIVPRMEHYACMVDLLGRSGLLSEAI 624

Query: 471 ELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEG 530
           E I SMPF  D  VW   LG+C+ HR   LG+ AA  +L+ +P+   TYI+LSN+YA EG
Sbjct: 625 EFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKMILEREPHDPATYILLSNLYATEG 684

Query: 531 KWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMN 590
           +WE+ A  RK M+     KE G SWIEV ++V  F   D +    Q +Y  L+ L   + 
Sbjct: 685 RWEDVAAIRKNMKQKQITKEAGSSWIEVENQVHKFHVGDTLHPKAQQIYEKLDELALKIK 744

Query: 591 ETAYEPDIDCLIHDLEGE 608
              Y P+ D ++HD+E E
Sbjct: 745 NVGYVPNTDFVLHDVEDE 762



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 111/375 (29%), Positives = 203/375 (54%), Gaps = 17/375 (4%)

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD--N 166
           N    T S +LK C   K+     L+H       L     + NSL+ +Y+    S D   
Sbjct: 49  NNKLITSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYSK---SNDPIT 105

Query: 167 ARLVFNDMK--WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAVRA 223
           A  +F  M+   ++ VS++++I+ +A++ N    + +F ++LL+ GV  N Y F+  +RA
Sbjct: 106 AFSIFQSMENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRA 165

Query: 224 CASTGWVSFGKLIHAAVIKHG-FGSNLPVMNSILDMY---CRFDCLSDANQYFDEMTEKD 279
           C   G+   G  +   V+K G F S++ V   ++DM+   C    L  A + FD+M EK+
Sbjct: 166 CLKGGFFKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKN 225

Query: 280 LITWNTIIAGYEKSG-SSECLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
           ++TW  +I    + G + E +++F +M  S  + P+ FT T +I+ CA +  LS G+++H
Sbjct: 226 VVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELH 285

Query: 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY--GAHGH 395
           + ++R GL  +L +  +L+DMYAKCG + +++K+F  M + ++++WT+++ GY  G  G+
Sbjct: 286 SWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGY 345

Query: 396 GKEAIELFDEM-VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG 454
            +EA+ +F  M ++ GV P+   F  VL AC+     D G +         ++    +  
Sbjct: 346 EREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQTIKLGLSAIDCVGN 405

Query: 455 CVVDLLGRAGRVKEA 469
            +V +  ++GR++ A
Sbjct: 406 GLVSVYAKSGRMESA 420



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 105/358 (29%), Positives = 178/358 (49%), Gaps = 17/358 (4%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYT--SFNCHNQAWTVFVEM-VRNE 107
           +L+  Y   GL++EAR +FD M E +V+SWT ++ GY         +A  +F  M ++  
Sbjct: 302 SLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGG 361

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V PN FT S VLKAC  +        VHG  IK GL     V N L+ VYA     M++A
Sbjct: 362 VAPNCFTFSGVLKACASLPDFDFGEQVHGQTIKLGLSAIDCVGNGLVSVYAKSG-RMESA 420

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R  F+ +  KN VS T +        N      + +E+   G  ++ ++++  +   A  
Sbjct: 421 RKCFDVLFEKNLVSETVVDDTNVKDFNLNSEQDLDREVEYVGSGVSSFTYASLLSGAACI 480

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
           G +  G+ IHA V+K GF ++L V N+++ MY +      A Q F++M + ++ITW +II
Sbjct: 481 GTIGKGEQIHAMVVKIGFRTDLSVNNALISMYSKCGNKEAALQVFNDMEDCNVITWTSII 540

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALS------CGQQVHAGI 340
            G+ K G +S+ L +F  M      PN  T+ ++++AC+ +  +          + + GI
Sbjct: 541 NGFAKHGFASKALELFYNMLETGVKPNDVTYIAVLSACSHVGLIDEAWKHFTSMRDNHGI 600

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGK 397
           V R     +     ++D+  + G +S++ +  + M  D D + W + +     H + K
Sbjct: 601 VPR-----MEHYACMVDLLGRSGLLSEAIEFINSMPFDADALVWRTFLGSCRVHRNTK 653



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 143/278 (51%), Gaps = 29/278 (10%)

Query: 218 SIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV----MNSILDMYCRFDCLSDANQYFD 273
           S+ ++ C  T     GKL+H  +      SNLP+    +NS++ +Y + +    A   F 
Sbjct: 56  SLLLKQCIRTKNTHLGKLLHHKLTT----SNLPLDTLLLNSLITLYSKSNDPITAFSIFQ 111

Query: 274 EM--TEKDLITWNTIIAGYEKSGSSECLN---MFSKMK-SERFSPNCFTFTSIIAACATL 327
            M  +++D++++++II+ +  + +  CL    MF ++   +   PN + FT++I AC   
Sbjct: 112 SMENSKRDVVSYSSIISCF--ANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKG 169

Query: 328 AALSCGQQVHAGIVRRG-LDGNLALANALIDMYAKCGNISD---SQKIFSEMSDRDLVTW 383
                G  +   +++ G  D ++ +   LIDM+ K  +++D   ++K+F +M ++++VTW
Sbjct: 170 GFFKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTW 229

Query: 384 TSMMIGYGAHGHGKEAIELFDEM-VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN 442
           T M+     +G+  EAI+LF EM V SG  PDR     +++ C+    +  G    K ++
Sbjct: 230 TLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLG----KELH 285

Query: 443 DYNVNPNKEIYGCV----VDLLGRAGRVKEAYELIKSM 476
            + +     +  CV    VD+  + G V+EA ++   M
Sbjct: 286 SWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGM 323


>gi|125577145|gb|EAZ18367.1| hypothetical protein OsJ_33897 [Oryza sativa Japonica Group]
          Length = 730

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/563 (36%), Positives = 326/563 (57%), Gaps = 23/563 (4%)

Query: 64  EARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACK 123
           +AR LFD MPER+VV+WT ++ GYT  +       VFVEM+     P+ +TL + L AC 
Sbjct: 91  DARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACL 150

Query: 124 GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWT 183
               +     VHG AIK G E    + NSL  +YA    S+D+A   F  +  KN ++WT
Sbjct: 151 ASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLG-SLDSALRAFWRIPEKNVITWT 209

Query: 184 TLITGYAHSGNGYG-GLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIK 242
           T+I+  A        G+ +F +ML++GV  N ++ +  +  C +   ++ GK + A   K
Sbjct: 210 TMISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFK 269

Query: 243 HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE----------- 291
            G  +NLPV NS + +Y R     +A + F++M +  +ITWN +I+GY            
Sbjct: 270 IGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQ 329

Query: 292 -KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
            +S   + L +F  +K     P+ FTF+SI++ C+ + AL  G+Q+HA  ++ G   ++ 
Sbjct: 330 ARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVV 389

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           + +AL++MY KCG I D+ K F EM  R  VTWTSM+ GY  HG  +EAI+LF+EM  +G
Sbjct: 390 VNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAG 449

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
           VRP+ I F+++L+ACS+AGLV+E   YF  M  +Y + P  + YGC++D+  R GRV++A
Sbjct: 450 VRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDA 509

Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529
           +  IK   F+P+E++W  L+  C+ H    L   AA ++L+LKP  + TYI+L N+Y + 
Sbjct: 510 FSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIETYILLLNMYIST 569

Query: 530 GKWEEFAKFRKIMRGMGSKKEVGM----SWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
            +W++ A+ RK+M+    +++VG+    SWI ++DKV  F AND+       +Y +LE L
Sbjct: 570 ERWQDVARVRKLMK----QEDVGILRDRSWITIKDKVYFFRANDRTHPQATELYQLLENL 625

Query: 586 IRHMNETAYEPDIDCLIHDLEGE 608
           +       YEP  +  + D E +
Sbjct: 626 LEKAKAIGYEPYQNAELSDSEDD 648



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 122/488 (25%), Positives = 226/488 (46%), Gaps = 44/488 (9%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMI-AGYTSFNCHNQAWTVFVEMVRN 106
           +  +L   Y   G ++ A   F  +PE++V++WT MI A      C     ++F++M+ +
Sbjct: 176 MGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEECVELGMSLFIDMLMD 235

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V PN FTL+SV+  C     L+    V   + K G E ++ V+NS M +Y       D 
Sbjct: 236 GVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKG-ETDE 294

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAH-----------SGNGYGGLGVFKEMLLEGVEMNPY 215
           A  +F  M+  + ++W  +I+GYA               G+  L +F+++    ++ + +
Sbjct: 295 AMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLF 354

Query: 216 SFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM 275
           +FS  +  C++   +  G+ IHA  IK GF S++ V +++++MY +  C+ DAN+ F EM
Sbjct: 355 TFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEM 414

Query: 276 TEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334
             +  +TW ++I+GY + G   E + +F +M+     PN  TF S+++AC + A L    
Sbjct: 415 PTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSAC-SYAGLVEEA 473

Query: 335 QVHAGIVRRG--LDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYG 391
           + +  ++++   ++  +     +IDM+ + G + D+         + +   W+S++ G  
Sbjct: 474 EHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCR 533

Query: 392 AHGH-----------------GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDE- 433
           +HG+                 G E   L   M  S  R   +  +  L      G++ + 
Sbjct: 534 SHGNMELAFYAADKLLELKPKGIETYILLLNMYISTERWQDVARVRKLMKQEDVGILRDR 593

Query: 434 ---GLK---YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGP 487
               +K   YF   ND       E+Y  + +LL +A  +   YE  ++      E    P
Sbjct: 594 SWITIKDKVYFFRANDRTHPQATELYQLLENLLEKAKAI--GYEPYQNAELSDSEDDEKP 651

Query: 488 LLGACKEH 495
             G+ K H
Sbjct: 652 AAGSLKHH 659



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 1/149 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++ + L+  Y   G I++A   F EMP R  V+WT MI+GY+      +A  +F EM   
Sbjct: 389 VVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLA 448

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKE-GLEGSIYVENSLMDVYATCCISMD 165
            V PN  T  S+L AC     +  A     M  KE  +E  +     ++D++       D
Sbjct: 449 GVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVED 508

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGN 194
               +       N+  W++L+ G    GN
Sbjct: 509 AFSFIKRTGFEPNEAIWSSLVAGCRSHGN 537


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/549 (35%), Positives = 324/549 (59%), Gaps = 6/549 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++ ++ +  Y    + E+A  LFDEMPERDV SW  +I+ Y       +A  +F EM  +
Sbjct: 334 VVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVS 393

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMD 165
              P++ TL++V+ +C  +  L     +H   ++ G     +V ++L+D+Y  C C+ M 
Sbjct: 394 GFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEM- 452

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A+ VF  ++ KN VSW ++I GY+  G+    + +F+ M  EG+     + S  + AC+
Sbjct: 453 -AKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACS 511

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
            +  +  GK IH  +I++   +++ V +S++D+Y +   +  A   F  M + ++++WN 
Sbjct: 512 RSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNV 571

Query: 286 IIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I+GY K GS  E L +F+ M+     P+  TFTS++ AC+ LA L  G+++H  I+   
Sbjct: 572 MISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESK 631

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           L+ N  +  AL+DMYAKCG + ++  IF+++ +RD V+WTSM+  YG+HG   EA++LF+
Sbjct: 632 LEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFE 691

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRA 463
           +M +S  +PD++ F+A+L+ACSHAGLVDEG  YF  M  +Y   P  E Y C++DLLGR 
Sbjct: 692 KMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRV 751

Query: 464 GRVKEAYELIKSMP-FKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           GR++EAYE+++  P  + D  +   L  AC  H+  +LG+     +++  P+   TYIIL
Sbjct: 752 GRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYIIL 811

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           SN+YA+  KW+E  K R  ++ +G KK  G SWIEV  ++  F+  DK       +Y  +
Sbjct: 812 SNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEVGKRIHPFVVEDKSHPQADMIYECM 871

Query: 583 EMLIRHMNE 591
            +L  H+ +
Sbjct: 872 SILASHVEK 880



 Score =  248 bits (634), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 142/481 (29%), Positives = 253/481 (52%), Gaps = 7/481 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPER-DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           L  +LI  YF   L + A+ +F  +    D+  W  ++A  T      +   VF  ++  
Sbjct: 232 LCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHF 291

Query: 107 E-VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             + P+AFT  SVLKAC G+  +    +VH   IK G    + V +S + +YA C +  D
Sbjct: 292 PYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFED 351

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
             +L F++M  ++  SW  +I+ Y   G     L +F+EM + G + +  + +  + +CA
Sbjct: 352 AIKL-FDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCA 410

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               +  GK IH  +++ GF  +  V ++++DMY +  CL  A + F+++  K++++WN+
Sbjct: 411 RLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNS 470

Query: 286 IIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +IAGY   G S+ C+ +F +M  E   P   T +SI+ AC+    L  G+ +H  I+R  
Sbjct: 471 MIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNR 530

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           ++ ++ + ++LID+Y KCGNI  ++ +F  M   ++V+W  M+ GY   G   EA+ +F 
Sbjct: 531 VEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFT 590

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
           +M K+GV+PD I F +VL ACS   ++++G +    + +  +  N+ + G ++D+  + G
Sbjct: 591 DMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCG 650

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEH--RLPNLGKLAALRVLDLKPNMMGTYIIL 522
            V EA  +   +P + D   W  ++ A   H      L     ++  D KP+ +    IL
Sbjct: 651 AVDEALHIFNQLPER-DFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAIL 709

Query: 523 S 523
           S
Sbjct: 710 S 710



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 109/352 (30%), Positives = 198/352 (56%), Gaps = 12/352 (3%)

Query: 133 LVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS-WTTLITGYAH 191
           L+H   +  GL+ +I +  SL+++Y +C +   +A+LVF  ++   D++ W  L+     
Sbjct: 216 LIHQKIVSLGLQNNITLCKSLINLYFSCHL-FQSAKLVFQTIENPLDITLWNGLMAACTK 274

Query: 192 SGNGYGGLGVFKEML-LEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLP 250
           +     GL VF  +L    ++ + +++   ++AC+  G V +GK++H  VIK GF  ++ 
Sbjct: 275 NFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVV 334

Query: 251 VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSER 309
           VM+S + MY + +   DA + FDEM E+D+ +WN +I+ Y + G  E  L +F +MK   
Sbjct: 335 VMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSG 394

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
           F P+  T T++I++CA L  L  G+++H  +VR G   +  +++AL+DMY KCG +  ++
Sbjct: 395 FKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAK 454

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
           ++F ++  +++V+W SM+ GY   G  K  IELF  M + G+RP      ++L ACS + 
Sbjct: 455 EVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRS- 513

Query: 430 LVDEGLKYFKSMNDYNVNPNKE----IYGCVVDLLGRAGRVKEAYELIKSMP 477
                L+  K ++ Y +    E    +   ++DL  + G +  A  + ++MP
Sbjct: 514 ---VNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMP 562



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 130/251 (51%), Gaps = 3/251 (1%)

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLITWNTIIAGY 290
            GKLIH  ++  G  +N+ +  S++++Y        A   F  +    D+  WN ++A  
Sbjct: 213 LGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAAC 272

Query: 291 EKSGSS-ECLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
            K+    E L +F ++       P+ FT+ S++ AC+ L  +  G+ VH  +++ G   +
Sbjct: 273 TKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMD 332

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           + + ++ + MYAKC    D+ K+F EM +RD+ +W +++  Y   G  ++A+ELF+EM  
Sbjct: 333 VVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKV 392

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKE 468
           SG +PD +    V+++C+    ++ G +    +       +  +   +VD+ G+ G ++ 
Sbjct: 393 SGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEM 452

Query: 469 AYELIKSMPFK 479
           A E+ + +  K
Sbjct: 453 AKEVFEQIQRK 463


>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/561 (35%), Positives = 327/561 (58%), Gaps = 5/561 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + ++LIK Y + G I +AR LFD MP +D V W VM+ GY      + A  VF+EM R 
Sbjct: 183 FVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRT 242

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENS--LMDVYATCCISM 164
           E NPN+ T + VL  C     ++  + +HG+ +  GLE    V N+  L+D+Y  C   +
Sbjct: 243 ETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTFALIDIYFKC-RDV 301

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           + AR +F+     + V  T +I+GY  +G     L +F+ +L E +  N  + +  + AC
Sbjct: 302 EMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPAC 361

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           A    ++ GK +H  ++K+G G +  V ++I+DMY +   L  A+Q F  +++KD + WN
Sbjct: 362 AGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWN 421

Query: 285 TIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           ++I    ++G   E +++F +M       +C + ++ ++ACA L AL  G+++HA ++R 
Sbjct: 422 SMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRG 481

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
               +L   +ALIDMY+KCGN+  + ++F  M +++ V+W S++  YG HG  K+++ LF
Sbjct: 482 AFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLF 541

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGR 462
             M+  G++PD + F+A+++AC HAG VDEG+ YF+ M +   +    E Y C+VDL GR
Sbjct: 542 HGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGR 601

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AGR+ EA+ +I SMPF PD  VWG LLGAC+ H    L ++A+  + DL P   G Y++L
Sbjct: 602 AGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAEVASRNLFDLDPQNSGYYVLL 661

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           SN++A  G+WE   K R +M+  G +K  G SWI+V +    F+A D+    +  +Y +L
Sbjct: 662 SNVHANAGQWESVLKIRSLMKERGVQKVPGCSWIDVNNTTHMFVAADRSHPQSSQIYLLL 721

Query: 583 EMLIRHMNETAYEPDIDCLIH 603
           + L   + +  Y P +   +H
Sbjct: 722 KNLFLELRKEGYVPQLYLPMH 742



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 131/453 (28%), Positives = 229/453 (50%), Gaps = 7/453 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           IL T L+  Y   G   +A+ +F ++       W  MI G+T     + A   + +M+  
Sbjct: 82  ILGTKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGC 141

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA-TCCISMD 165
              P+ +T   V+KAC G+ S++   +VH      G E  ++V +SL+  Y+   CI   
Sbjct: 142 GTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCI--H 199

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +AR +F+ M  K+ V W  ++ GY  +G+     GVF EM       N  +F+  +  CA
Sbjct: 200 DARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCA 259

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNS--ILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           S   ++FG  +H  V+  G   + PV N+  ++D+Y +   +  A + FD+ T  D++  
Sbjct: 260 SEIMINFGSQLHGLVVSSGLEMDSPVANTFALIDIYFKCRDVEMARKIFDQRTPVDIVVC 319

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
             +I+GY  +G ++  L +F  +  ER   N  T  S++ ACA LAAL+ G+++H  I++
Sbjct: 320 TAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILK 379

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            G  G+  + +A++DMYAKCG +  + + F  +SD+D V W SM+     +G  +EAI+L
Sbjct: 380 NGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDL 439

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           F +M  +G + D +   A L+AC++   +  G +    M       +      ++D+  +
Sbjct: 440 FRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSK 499

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            G +  A  +  +M  K +E  W  ++ A   H
Sbjct: 500 CGNLDLACRVFDTMEEK-NEVSWNSIIAAYGNH 531



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 189/387 (48%), Gaps = 5/387 (1%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM 174
           L S+L+ C     LS     H   +  G+  +  +   L+ +Y  C   +D A+ +F  +
Sbjct: 49  LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLD-AKNIFYQL 107

Query: 175 KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGK 234
           +      W  +I G+   G     L  + +ML  G   + Y+F   ++AC     V+ G+
Sbjct: 108 RLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGR 167

Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG 294
           ++H  +   GF  ++ V +S++  Y    C+ DA   FD M  KD + WN ++ GY K+G
Sbjct: 168 VVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNG 227

Query: 295 S-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353
                  +F +M+    +PN  TF  +++ CA+   ++ G Q+H  +V  GL+ +  +AN
Sbjct: 228 DWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVAN 287

Query: 354 --ALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411
             ALID+Y KC ++  ++KIF + +  D+V  T+M+ GY  +G    A+E+F  +++  +
Sbjct: 288 TFALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERM 347

Query: 412 RPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471
           R + +   +VL AC+    +  G +    +       +  +   ++D+  + GR+  A++
Sbjct: 348 RANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQ 407

Query: 472 LIKSMPFKPDESVWGPLLGACKEHRLP 498
               +  K D   W  ++ +C ++  P
Sbjct: 408 TFIGISDK-DAVCWNSMITSCSQNGKP 433



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 119/263 (45%), Gaps = 3/263 (1%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   + + ++  Y   G ++ A   F  + ++D V W  MI   +      +A  +F +M
Sbjct: 384 GSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQM 443

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
                  +  ++S+ L AC  + +L     +H   ++      ++ E++L+D+Y+ C  +
Sbjct: 444 GMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCG-N 502

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +D A  VF+ M+ KN+VSW ++I  Y + G     L +F  ML +G++ +  +F   + A
Sbjct: 503 LDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISA 562

Query: 224 CASTGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLI 281
           C   G V  G         + G  + +     ++D++ R   L++A    + M    D  
Sbjct: 563 CGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAG 622

Query: 282 TWNTIIAGYEKSGSSECLNMFSK 304
            W T++      G+ E   + S+
Sbjct: 623 VWGTLLGACRLHGNVELAEVASR 645


>gi|359492976|ref|XP_002283668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 762

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/563 (36%), Positives = 324/563 (57%), Gaps = 14/563 (2%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + L T L+  Y   G +E AR +FDE+P R+VVSWT ++ GY   +    A  VF EM+ 
Sbjct: 104 AFLMTFLVNVYAKCGTMETARKVFDELPRRNVVSWTTLMTGYVHDSKPELAVQVFREMLE 163

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
               P  +TL + L A   + S      +HG +IK  +E    + NSL  +Y+ C  S++
Sbjct: 164 AGAYPTNYTLGTALSASSDLHSKELGKQIHGYSIKYRIEFDASIGNSLCSLYSKCG-SLE 222

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A   F  ++ KN +SWTT+I+ +  +G    GL  F EML E VE N ++ + A+  C 
Sbjct: 223 CAVKAFRRIRDKNVISWTTVISAWGDNGEAATGLQFFVEMLSECVEPNEFTLTSALSLCC 282

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               +  G  IH+  IK GF SNLP+ NSI+ +Y +   + +A + FDEM    L+TWN 
Sbjct: 283 VMQSLDIGTQIHSLTIKLGFESNLPIKNSIMYLYLKCGWIHEAKKLFDEMETISLVTWNA 342

Query: 286 IIAGYEK------------SGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG 333
           +IAG+ +               +E L++F K+      P+ FTF+S+++ C++L AL  G
Sbjct: 343 MIAGHARMMDFAKDDLAAHQCGTEALSIFLKLNRSGMKPDLFTFSSVLSVCSSLVALEQG 402

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
           +QVHA  ++ G   ++ +  AL++MY KCG+I  + K F EMS R L++WTSM+ GY  +
Sbjct: 403 EQVHAQTIKTGFLSDVVVGTALVNMYNKCGSIERASKAFVEMSIRTLISWTSMITGYAQN 462

Query: 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEI 452
           G  ++A+ LF++M  +GVRP++I F+ VL+ACSHAG+VDE L YF+ M N+Y + P  + 
Sbjct: 463 GQPQQALLLFEDMRLAGVRPNKITFVGVLSACSHAGMVDEALDYFQMMKNEYKITPVMDH 522

Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLK 512
           Y C++D+  R GR+ EA++ IK M  +P+E +W  L+  C+      LG  AA ++L+LK
Sbjct: 523 YACLIDMFVRLGRLDEAFDFIKEMDLEPNEFIWSILIAGCRSQGKLELGFYAAEQLLNLK 582

Query: 513 PNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMG 572
           P    TY +L N+Y + GKW+E ++ RK+M+     +    SWI ++DK+  F  N +  
Sbjct: 583 PKDTETYNLLLNMYLSAGKWKEVSRVRKMMKEEKLGRLKDWSWISIKDKIYSFKRNARSH 642

Query: 573 SHTQYVYGVLEMLIRHMNETAYE 595
           + +  +Y +L  L        YE
Sbjct: 643 AQSGEMYELLGNLHEKAKSFGYE 665



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 120/420 (28%), Positives = 214/420 (50%), Gaps = 16/420 (3%)

Query: 118 VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK 177
           +L+ C   K +S+A  +H   +K G     ++   L++VYA C  +M+ AR VF+++  +
Sbjct: 75  ILQECIDKKLVSDAQKIHAHIVKTGAHKDAFLMTFLVNVYAKCG-TMETARKVFDELPRR 133

Query: 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIH 237
           N VSWTTL+TGY H       + VF+EML  G     Y+   A+ A +       GK IH
Sbjct: 134 NVVSWTTLMTGYVHDSKPELAVQVFREMLEAGAYPTNYTLGTALSASSDLHSKELGKQIH 193

Query: 238 AAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE 297
              IK+    +  + NS+  +Y +   L  A + F  + +K++I+W T+I+ +  +G + 
Sbjct: 194 GYSIKYRIEFDASIGNSLCSLYSKCGSLECAVKAFRRIRDKNVISWTTVISAWGDNGEAA 253

Query: 298 C-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALI 356
             L  F +M SE   PN FT TS ++ C  + +L  G Q+H+  ++ G + NL + N+++
Sbjct: 254 TGLQFFVEMLSECVEPNEFTLTSALSLCCVMQSLDIGTQIHSLTIKLGFESNLPIKNSIM 313

Query: 357 DMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY-----------GAHGHGKEAIELFDE 405
            +Y KCG I +++K+F EM    LVTW +M+ G+            AH  G EA+ +F +
Sbjct: 314 YLYLKCGWIHEAKKLFDEMETISLVTWNAMIAGHARMMDFAKDDLAAHQCGTEALSIFLK 373

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           + +SG++PD   F +VL+ CS    +++G +            +  +   +V++  + G 
Sbjct: 374 LNRSGMKPDLFTFSSVLSVCSSLVALEQGEQVHAQTIKTGFLSDVVVGTALVNMYNKCGS 433

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKL--AALRVLDLKPNMMGTYIILS 523
           ++ A +    M  +   S W  ++    ++  P    L    +R+  ++PN +    +LS
Sbjct: 434 IERASKAFVEMSIRTLIS-WTSMITGYAQNGQPQQALLLFEDMRLAGVRPNKITFVGVLS 492



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 63/279 (22%), Positives = 137/279 (49%), Gaps = 4/279 (1%)

Query: 202 FKEML---LEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDM 258
           F+E L    EG ++    +   ++ C     VS  + IHA ++K G   +  +M  ++++
Sbjct: 54  FREALSFIREGTKVESAFYVPILQECIDKKLVSDAQKIHAHIVKTGAHKDAFLMTFLVNV 113

Query: 259 YCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTF 317
           Y +   +  A + FDE+  +++++W T++ GY      E  + +F +M      P  +T 
Sbjct: 114 YAKCGTMETARKVFDELPRRNVVSWTTLMTGYVHDSKPELAVQVFREMLEAGAYPTNYTL 173

Query: 318 TSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD 377
            + ++A + L +   G+Q+H   ++  ++ + ++ N+L  +Y+KCG++  + K F  + D
Sbjct: 174 GTALSASSDLHSKELGKQIHGYSIKYRIEFDASIGNSLCSLYSKCGSLECAVKAFRRIRD 233

Query: 378 RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY 437
           +++++WT+++  +G +G     ++ F EM+   V P+     + L+ C     +D G + 
Sbjct: 234 KNVISWTTVISAWGDNGEAATGLQFFVEMLSECVEPNEFTLTSALSLCCVMQSLDIGTQI 293

Query: 438 FKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
                      N  I   ++ L  + G + EA +L   M
Sbjct: 294 HSLTIKLGFESNLPIKNSIMYLYLKCGWIHEAKKLFDEM 332


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/639 (33%), Positives = 348/639 (54%), Gaps = 76/639 (11%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMP--ERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           + PS  AT+L+ +    G + +A   FD +P   RD V    M++ +   +    A +VF
Sbjct: 90  RAPSP-ATSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVF 148

Query: 101 VEMV-RNEVNPNAFTLSSVLKACKGMKSLS--NAALVHGMAIKEGLEGSIYVENSLMDVY 157
             ++    + P+ ++ ++++ A   M +L+  +   +H   +K G    + V N+L+ +Y
Sbjct: 149 HALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALY 208

Query: 158 ATCCISMD--NARLVFNDMKWKNDVSWTTLITGYAHSGN--------------------- 194
             C       +AR V ++M  K+D++WTT++ GY   G+                     
Sbjct: 209 MKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNA 268

Query: 195 ---GYGGLG-------VFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG 244
              GY   G       +F+ M+ E V ++ ++F+  + ACA+ G+   GK +H  +I+  
Sbjct: 269 MISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQ 328

Query: 245 FG----SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG------ 294
                 + LPV N+++ +Y +   +  A + FD M  KD+++WNTI++GY  SG      
Sbjct: 329 PNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAV 388

Query: 295 --------------------------SSECLNMFSKMKSERFSPNCFTFTSIIAACATLA 328
                                     S + L +F++M++E   P  +T+   IAAC  L 
Sbjct: 389 EVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELG 448

Query: 329 ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMI 388
           AL  G+Q+HA +V+ G + + +  NAL+ MYAKCG ++D++ +F  M + D V+W +M+ 
Sbjct: 449 ALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMIS 508

Query: 389 GYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVN 447
             G HGHG+EA+ELFD+MV  G+ PDRI F+ +LTAC+HAGLVDEG  YF+SM  D+ ++
Sbjct: 509 ALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGIS 568

Query: 448 PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALR 507
           P ++ Y  ++DLLGR+GR+ EA +LIK+MPF+P  S+W  +L  C+ +     G  AA +
Sbjct: 569 PGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQ 628

Query: 508 VLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIA 567
           +  + P   GTYI+LSN Y+A G+W + A+ RK+MR  G KKE G SWIEV  K+  F+ 
Sbjct: 629 LFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLV 688

Query: 568 NDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
            D      Q VY  LE++   M +  Y PD   ++HD+E
Sbjct: 689 GDTKHPEAQEVYQFLEVIGARMRKLGYVPDTKFVLHDME 727



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 169/373 (45%), Gaps = 40/373 (10%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P    +  T ++  Y   G +  AR++F+E+  +  V W  MI+GY        A+ +F
Sbjct: 227 MPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELF 286

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG----LEGSIYVENSLMDV 156
             MV  +V  + FT +SVL AC       +   VHG  I+       E ++ V N+L+ +
Sbjct: 287 RRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTL 346

Query: 157 YA--------------------------------TCCISMDNARLVFNDMKWKNDVSWTT 184
           Y+                                + C  +D A  VF  M +KND+SW  
Sbjct: 347 YSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGC--LDKAVEVFKVMPYKNDLSWMV 404

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG 244
           +++GY H G     L +F +M  E V+   Y+++ A+ AC   G +  G+ +HA +++ G
Sbjct: 405 MVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCG 464

Query: 245 FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFS 303
           F ++    N++L MY +   ++DA   F  M   D ++WN +I+   + G   E L +F 
Sbjct: 465 FEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFD 524

Query: 304 KMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-GLDGNLALANALIDMYAKC 362
           +M +E   P+  +F +I+ AC     +  G      + R  G+         LID+  + 
Sbjct: 525 QMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRS 584

Query: 363 GNISDSQKIFSEM 375
           G I +++ +   M
Sbjct: 585 GRIGEARDLIKTM 597


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/554 (36%), Positives = 316/554 (57%), Gaps = 3/554 (0%)

Query: 57  FDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLS 116
            D G    ++ +F ++ E ++  W  MI G  S +C + A  ++  M      PN FT+ 
Sbjct: 59  LDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIP 118

Query: 117 SVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW 176
            VLKAC     +     +H + +K G +  ++V+ SL+ +Y  C  + D+A  VF+D+  
Sbjct: 119 FVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKC-DNFDDALKVFDDIPD 177

Query: 177 KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLI 236
           KN VSWT +ITGY  SG+    +G FK++L  G++ + +S    + ACA  G  + G+ I
Sbjct: 178 KNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWI 237

Query: 237 HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-S 295
              +   G G N+ V  S+LDMY +   L  AN  F  M EKD+++W+T+I GY  +G  
Sbjct: 238 DRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLP 297

Query: 296 SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
            + L++F +M+SE   P+C+T   +++ACATL AL  G    + + R     N  L  AL
Sbjct: 298 QQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTAL 357

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           IDMY+KCG+++ + +IF+ M  +D V W +MM+G   +GH K    LF  + K G+RPD 
Sbjct: 358 IDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDE 417

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
             F+ +L  C+H G V+EG ++F +M   +++ P+ E YGC+VDLLGRAG + EA++LI 
Sbjct: 418 NTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLIN 477

Query: 475 SMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEE 534
           +MP KP+  VWG LLG CK H+  +L +    ++++L+P   G Y+ LSNIY+   +WEE
Sbjct: 478 NMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEE 537

Query: 535 FAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAY 594
             K R  M+    +K    SWIE+   V  F+  DK    ++ +Y  L+ L R +    +
Sbjct: 538 AEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGH 597

Query: 595 EPDIDCLIHDLEGE 608
            P  + ++ D+E E
Sbjct: 598 VPTTEFVLFDIEEE 611



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 192/365 (52%), Gaps = 4/365 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + T+L+  Y      ++A  +FD++P+++VVSWT +I GY S     +A   F +++  
Sbjct: 150 FVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEM 209

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + P++F+L  VL AC  +   ++   +       G+  +++V  SL+D+Y  C  +++ 
Sbjct: 210 GLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCG-NLER 268

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A L+F+ M  K+ VSW+T+I GYA +G     L +F +M  E ++ + Y+    + ACA+
Sbjct: 269 ANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACAT 328

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G +  G    + + ++ F SN  +  +++DMY +   ++ A + F  M +KD + WN +
Sbjct: 329 LGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAM 388

Query: 287 IAGYEKSGSSECL-NMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-G 344
           + G   +G ++ + ++FS ++     P+  TF  ++  C     ++ G+Q    + R   
Sbjct: 389 MVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFS 448

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHGHGKEAIELF 403
           L  ++     ++D+  + G ++++ ++ + M  + + V W +++ G   H     A ++ 
Sbjct: 449 LTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVL 508

Query: 404 DEMVK 408
            ++++
Sbjct: 509 KKLIE 513



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 81/191 (42%), Gaps = 1/191 (0%)

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
           + +HA ++R  LD +  L N ++      G+ + S+ +FS++ + ++  W +M+ G  + 
Sbjct: 33  KHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSK 92

Query: 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIY 453
               +AI L+  M   G  P+      VL AC+    V  GLK    +     + +  + 
Sbjct: 93  DCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVK 152

Query: 454 GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKE-HRLPNLGKLAALRVLDLK 512
             ++ L  +     +A ++   +P K   S    + G     H    +G    L  + LK
Sbjct: 153 TSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLK 212

Query: 513 PNMMGTYIILS 523
           P+      +L+
Sbjct: 213 PDSFSLVKVLA 223


>gi|357468471|ref|XP_003604520.1| Coatomer subunit beta'-2 [Medicago truncatula]
 gi|355505575|gb|AES86717.1| Coatomer subunit beta'-2 [Medicago truncatula]
          Length = 1033

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/540 (37%), Positives = 310/540 (57%), Gaps = 3/540 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +++ L+  Y   G  E+  ++F+ M  R+VVSWT +I G     C     + F EM R++
Sbjct: 188 VSSALVDMYMKVGKTEQGCSVFENMTTRNVVSWTAVIVGLVHAGCSLDGLSYFSEMWRSK 247

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V  ++ T +  LKA      L     +H   IK+G   + YV N+L  +Y+ C    D  
Sbjct: 248 VGYDSHTFAVALKASAESGLLHYGKAIHAQTIKQGFNETAYVVNTLGTMYSKC-RKPDYV 306

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             +F  M   + VSWT LI  Y   G+    L  FK M    V  N Y+F+  + ACA+ 
Sbjct: 307 MRLFGKMSTPDVVSWTNLIMTYVQMGDEERALDAFKRMRKSDVSPNEYTFASVISACANL 366

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
               +G+ IH   ++ G    L V NSI+ +Y +   L +A+  FD MT KD+I+W+TII
Sbjct: 367 AITKWGEQIHGHALRLGLVDALSVSNSIITLYSKCGLLQEASLVFDGMTRKDIISWSTII 426

Query: 288 AGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           + Y + S + E  N  S M  E   PN F   S+++ C ++A L  G+QVHA  +  GLD
Sbjct: 427 SVYCQGSHAKEAFNYLSWMSREGPKPNEFALASVLSVCGSMALLEPGKQVHAYALCIGLD 486

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
               + +ALI MY++ GN+ ++ KIF  + + D+V+WT+M+ GY  HG+ +EAI LF+ +
Sbjct: 487 HETMVHSALISMYSRSGNLQEASKIFDSIKNNDIVSWTAMINGYAEHGYSQEAISLFENI 546

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGR 465
              G+ PD + F+ +LTAC+HAGLVD G  Y+K M N+Y + P+KE YGC++DLL RAGR
Sbjct: 547 SSVGLMPDYVTFIGILTACNHAGLVDLGFYYYKLMTNEYQIAPSKEHYGCIIDLLCRAGR 606

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           + EA  ++++MPF  D+ VW  LL AC++H   +    AA ++L L PN  G +I L+NI
Sbjct: 607 LSEAEHMVRNMPFPCDDVVWSTLLRACRDHGDLDRAIWAAEQMLRLHPNSAGAHITLANI 666

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           Y+A G+ EE A  RK+M+  G  KE G SWI   D++  F+A  +    ++ +  +LE+L
Sbjct: 667 YSASGRREEAAHVRKLMKSKGVIKEPGWSWINSNDQLNTFVAGVQSHPLSKQITTILELL 726



 Score =  253 bits (647), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 139/457 (30%), Positives = 245/457 (53%), Gaps = 6/457 (1%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P  P +   + +K     G I EAR +F++M  RD +SWT +IAGY +    N+A  +F
Sbjct: 81  VPNMPEL--NSQLKQLMKLGKICEARDMFNKMSHRDEISWTNLIAGYVNAANSNEALILF 138

Query: 101 VEM-VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
             M V + +  + F +S  LKAC    ++    L+HG ++K GL  S++V ++L+D+Y  
Sbjct: 139 SNMWVDSGLQKDQFVVSVALKACALGMNVYFGELLHGFSVKSGLINSVFVSSALVDMYMK 198

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
                +    VF +M  +N VSWT +I G  H+G    GL  F EM    V  + ++F++
Sbjct: 199 VG-KTEQGCSVFENMTTRNVVSWTAVIVGLVHAGCSLDGLSYFSEMWRSKVGYDSHTFAV 257

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
           A++A A +G + +GK IHA  IK GF     V+N++  MY +        + F +M+  D
Sbjct: 258 ALKASAESGLLHYGKAIHAQTIKQGFNETAYVVNTLGTMYSKCRKPDYVMRLFGKMSTPD 317

Query: 280 LITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           +++W  +I  Y + G  E  L+ F +M+    SPN +TF S+I+ACA LA    G+Q+H 
Sbjct: 318 VVSWTNLIMTYVQMGDEERALDAFKRMRKSDVSPNEYTFASVISACANLAITKWGEQIHG 377

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
             +R GL   L+++N++I +Y+KCG + ++  +F  M+ +D+++W++++  Y    H KE
Sbjct: 378 HALRLGLVDALSVSNSIITLYSKCGLLQEASLVFDGMTRKDIISWSTIISVYCQGSHAKE 437

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVD 458
           A      M + G +P+     +VL+ C    L++ G +         ++    ++  ++ 
Sbjct: 438 AFNYLSWMSREGPKPNEFALASVLSVCGSMALLEPGKQVHAYALCIGLDHETMVHSALIS 497

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           +  R+G ++EA ++  S+    D   W  ++    EH
Sbjct: 498 MYSRSGNLQEASKIFDSIK-NNDIVSWTAMINGYAEH 533



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 181/361 (50%), Gaps = 5/361 (1%)

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAVRACA 225
           AR +FN M  ++++SWT LI GY ++ N    L +F  M ++ G++ + +  S+A++ACA
Sbjct: 103 ARDMFNKMSHRDEISWTNLIAGYVNAANSNEALILFSNMWVDSGLQKDQFVVSVALKACA 162

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               V FG+L+H   +K G  +++ V ++++DMY +          F+ MT +++++W  
Sbjct: 163 LGMNVYFGELLHGFSVKSGLINSVFVSSALVDMYMKVGKTEQGCSVFENMTTRNVVSWTA 222

Query: 286 IIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I G   +G S + L+ FS+M   +   +  TF   + A A    L  G+ +HA  +++G
Sbjct: 223 VIVGLVHAGCSLDGLSYFSEMWRSKVGYDSHTFAVALKASAESGLLHYGKAIHAQTIKQG 282

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
            +    + N L  MY+KC       ++F +MS  D+V+WT++++ Y   G  + A++ F 
Sbjct: 283 FNETAYVVNTLGTMYSKCRKPDYVMRLFGKMSTPDVVSWTNLIMTYVQMGDEERALDAFK 342

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
            M KS V P+   F +V++AC++  +   G +         +     +   ++ L  + G
Sbjct: 343 RMRKSDVSPNEYTFASVISACANLAITKWGEQIHGHALRLGLVDALSVSNSIITLYSKCG 402

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGA-CK-EHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
            ++EA  +   M  K D   W  ++   C+  H       L+ +     KPN      +L
Sbjct: 403 LLQEASLVFDGMTRK-DIISWSTIISVYCQGSHAKEAFNYLSWMSREGPKPNEFALASVL 461

Query: 523 S 523
           S
Sbjct: 462 S 462


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/574 (36%), Positives = 327/574 (56%), Gaps = 16/574 (2%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNC--HNQAWTVFVEMV 104
            ++T L+  Y     + +A  +F  MP RD+V+W  M+AGY       H  A  + ++M 
Sbjct: 161 FVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQ 220

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAI----------KEGLEGSIYVENSLM 154
            + + PNA TL ++L       +L+    VH   I          K  L   + +  +L+
Sbjct: 221 MHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALL 280

Query: 155 DVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGV-EMN 213
           D+YA C  S+  AR VF+ M  +N+V+W+ LI G+           +FK ML +G+  ++
Sbjct: 281 DMYAKCG-SLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLS 339

Query: 214 PYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFD 273
           P S + A+RACAS   +  G+ +HA + K G  ++L   NS+L MY +   +  A   FD
Sbjct: 340 PTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFD 399

Query: 274 EMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSC 332
           EM  KD ++++ +++GY ++G + E   +F KM++    P+  T  S+I AC+ LAAL  
Sbjct: 400 EMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQH 459

Query: 333 GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA 392
           G+  H  ++ RGL    ++ NALIDMYAKCG I  S+++F+ M  RD+V+W +M+ GYG 
Sbjct: 460 GRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGI 519

Query: 393 HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKE 451
           HG GKEA  LF EM   G  PD + F+ +L+ACSH+GLV EG  +F  M + Y + P  E
Sbjct: 520 HGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRME 579

Query: 452 IYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDL 511
            Y C+VDLL R G + EAYE I+SMP + D  VW  LLGAC+ ++  +LGK  +  + +L
Sbjct: 580 HYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQEL 639

Query: 512 KPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKM 571
            P   G +++LSNIY+A G+++E A+ R I +  G KK  G SWIE+   +  F+  D+ 
Sbjct: 640 GPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQS 699

Query: 572 GSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDL 605
              +  +Y  L+ ++  + +  Y+PD   ++ DL
Sbjct: 700 HPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDL 733



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 125/475 (26%), Positives = 228/475 (48%), Gaps = 27/475 (5%)

Query: 56  YFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQA--WTVFVEMVRNEVNPNAF 113
           +   G +  A  LFD++P  DV ++  +I  Y+S +    A    ++  M+R+ V PN +
Sbjct: 67  HIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNY 126

Query: 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFND 173
           T    LKAC  +        +H  AI  GL+  ++V  +L+D+Y  C    D A  +F  
Sbjct: 127 TFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAH-IFAT 185

Query: 174 MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA--VRACASTGWVS 231
           M  ++ V+W  ++ GYAH G  +  +     M ++   + P + ++   +   A  G ++
Sbjct: 186 MPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALA 245

Query: 232 FGKLIHAAVIKHGFGSN----------LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
            G  +HA  I+     N          + +  ++LDMY +   L  A + FD M  ++ +
Sbjct: 246 QGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEV 305

Query: 282 TWNTIIAGYEK-SGSSECLNMFSKMKSERFSPNCF----TFTSIIAACATLAALSCGQQV 336
           TW+ +I G+   S  ++   +F  M ++     CF    +  S + ACA+L  L  G+Q+
Sbjct: 306 TWSALIGGFVLCSRMTQAFLLFKAMLAQGL---CFLSPTSIASALRACASLDHLRMGEQL 362

Query: 337 HAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHG 396
           HA + + G+  +L   N+L+ MYAK G I  +  +F EM+ +D V++++++ GY  +G  
Sbjct: 363 HALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRA 422

Query: 397 KEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCV 456
           +EA  +F +M    V PD    ++++ ACSH   +  G     S+    +     I   +
Sbjct: 423 EEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNAL 482

Query: 457 VDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDL 511
           +D+  + GR+  + ++   MP + D   W  ++     H    LGK A    L++
Sbjct: 483 IDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIAGYGIH---GLGKEATALFLEM 533


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/564 (36%), Positives = 328/564 (58%), Gaps = 4/564 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + L  +L+  Y   G ++ A  LFD MP+R++VSWT MI+G +  +  ++A   F  M  
Sbjct: 40  TFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRI 99

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
               P  F  SS ++AC  + S+     +H +A+K G+   ++V ++L D+Y+ C    D
Sbjct: 100 CGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFD 159

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
             + VF +M  K++VSWT +I GY+  G     L  FK+M+ E V ++ +     + AC 
Sbjct: 160 ACK-VFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACG 218

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE-KDLITWN 284
           +     FG+ +H++V+K GF S++ V N++ DMY +   +  A+  F   +E ++++++ 
Sbjct: 219 ALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYT 278

Query: 285 TIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +I GY E     + L++F +++ +   PN FTF+S+I ACA  AAL  G Q+HA +++ 
Sbjct: 279 CLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKI 338

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
             D +  +++ L+DMY KCG +  + + F E+ D   + W S++  +G HG GK+AI+ F
Sbjct: 339 NFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFF 398

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGR 462
           + MV  GV+P+ I F+++LT CSHAGLV+EGL YF SM+  Y V P +E Y CV+DLLGR
Sbjct: 399 ERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGR 458

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AGR+KEA E I  MPF+P+   W   LGAC+ H    +GKLAA +++ L+P   G  ++L
Sbjct: 459 AGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLL 518

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           SNIYA E +WE+    R  MR    KK  G SW++V  K   F A D        +Y  L
Sbjct: 519 SNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHXRKSAIYEKL 578

Query: 583 EMLIRHMNETAYEPDIDCLIHDLE 606
           + L+  +    Y P  D +  D++
Sbjct: 579 DXLLDQIKAAGYVPXTDSVPLDMD 602



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 130/250 (52%), Gaps = 1/250 (0%)

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           ++  A T  +  GK +HA +I  G+     + N +++MY +   L  A + FD M +++L
Sbjct: 12  IQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNL 71

Query: 281 ITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           ++W  +I+G  + S  SE +  F  M+     P  F F+S I ACA+L ++  G+Q+H  
Sbjct: 72  VSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCL 131

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
            ++ G+   L + + L DMY+KCG + D+ K+F EM  +D V+WT+M+ GY   G  +EA
Sbjct: 132 ALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEA 191

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL 459
           +  F +M+   V  D+ V  + L AC        G     S+       +  +   + D+
Sbjct: 192 LLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDM 251

Query: 460 LGRAGRVKEA 469
             +AG ++ A
Sbjct: 252 YSKAGDMESA 261



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 1/170 (0%)

Query: 320 IIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD 379
           +I   A    L  G+Q+HA ++  G      L N L++MY+KCG +  + K+F  M  R+
Sbjct: 11  VIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRN 70

Query: 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439
           LV+WT+M+ G   +    EAI  F  M   G  P +  F + + AC+  G ++ G +   
Sbjct: 71  LVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHC 130

Query: 440 SMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
               + +     +   + D+  + G + +A ++ + MP K DE  W  ++
Sbjct: 131 LALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCK-DEVSWTAMI 179


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/573 (36%), Positives = 327/573 (57%), Gaps = 16/573 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNC--HNQAWTVFVEMVR 105
           ++T L+  Y     + +A  +F  MP RD+V+W  M+AGY       H  A  + ++M  
Sbjct: 47  VSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQM 106

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAI----------KEGLEGSIYVENSLMD 155
           + + PNA TL ++L       +L+    VH   I          K  L   + +  +L+D
Sbjct: 107 HRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLD 166

Query: 156 VYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGV-EMNP 214
           +YA C  S+  AR VF+ M  +N+V+W+ LI G+           +FK ML +G+  ++P
Sbjct: 167 MYAKCG-SLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSP 225

Query: 215 YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE 274
            S + A+RACAS   +  G+ +HA + K G  ++L   NS+L MY +   +  A   FDE
Sbjct: 226 TSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDE 285

Query: 275 MTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG 333
           M  KD ++++ +++GY ++G + E   +F KM++    P+  T  S+I AC+ LAAL  G
Sbjct: 286 MAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHG 345

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
           +  H  ++ RGL    ++ NALIDMYAKCG I  S+++F+ M  RD+V+W +M+ GYG H
Sbjct: 346 RCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIH 405

Query: 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEI 452
           G GKEA  LF EM   G  PD + F+ +L+ACSH+GLV EG  +F  M + Y + P  E 
Sbjct: 406 GLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEH 465

Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLK 512
           Y C+VDLL R G + EAYE I+SMP + D  VW  LLGAC+ ++  +LGK  +  + +L 
Sbjct: 466 YICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELG 525

Query: 513 PNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMG 572
           P   G +++LSNIY+A G+++E A+ R I +  G KK  G SWIE+   +  F+  D+  
Sbjct: 526 PEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSH 585

Query: 573 SHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDL 605
             +  +Y  L+ ++  + +  Y+PD   ++ DL
Sbjct: 586 PQSPEIYRELDNILVGIKKLGYQPDTSFVLQDL 618



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 113/426 (26%), Positives = 205/426 (48%), Gaps = 25/426 (5%)

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M+R+ V PN +T    LKAC  +        +H  AI  GL+  ++V  +L+D+Y  C  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA-- 220
             D A  +F  M  ++ V+W  ++ GYAH G  +  +     M ++   + P + ++   
Sbjct: 61  LPDAAH-IFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVAL 119

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSN----------LPVMNSILDMYCRFDCLSDANQ 270
           +   A  G ++ G  +HA  I+     N          + +  ++LDMY +   L  A +
Sbjct: 120 LPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARR 179

Query: 271 YFDEMTEKDLITWNTIIAGYEK-SGSSECLNMFSKMKSERFSPNCF----TFTSIIAACA 325
            FD M  ++ +TW+ +I G+   S  ++   +F  M ++     CF    +  S + ACA
Sbjct: 180 VFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGL---CFLSPTSIASALRACA 236

Query: 326 TLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTS 385
           +L  L  G+Q+HA + + G+  +L   N+L+ MYAK G I  +  +F EM+ +D V++++
Sbjct: 237 SLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSA 296

Query: 386 MMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYN 445
           ++ GY  +G  +EA  +F +M    V PD    ++++ ACSH   +  G     S+    
Sbjct: 297 LVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRG 356

Query: 446 VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAA 505
           +     I   ++D+  + GR+  + ++   MP + D   W  ++     H    LGK A 
Sbjct: 357 LASETSICNALIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIAGYGIH---GLGKEAT 412

Query: 506 LRVLDL 511
              L++
Sbjct: 413 ALFLEM 418



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 116/461 (25%), Positives = 217/461 (47%), Gaps = 31/461 (6%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +L T L+  Y   G +  AR +FD MP R+ V+W+ +I G+   +   QA+ +F  M+  
Sbjct: 159 LLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQ 218

Query: 107 E---VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
               ++P   +++S L+AC  +  L     +H +  K G+   +   NSL+ +YA   + 
Sbjct: 219 GLCFLSPT--SIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGL- 275

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +D A  +F++M  K+ VS++ L++GY  +G       VFK+M    VE +  +    + A
Sbjct: 276 IDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPA 335

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C+    +  G+  H +VI  G  S   + N+++DMY +   +  + Q F+ M  +D+++W
Sbjct: 336 CSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSW 395

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ-VHAGIV 341
           NT+IAGY   G   E   +F +M +  F P+  TF  +++AC+    +  G+   H    
Sbjct: 396 NTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGH 455

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIG---YGAHGHGK 397
             GL   +     ++D+ ++ G + ++ +    M  R D+  W +++     Y     GK
Sbjct: 456 GYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGK 515

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG--LKYFKSMNDYNVNPN---KEI 452
           +   +  E+   G       F+ +    S AG  DE   ++  + +  +  +P     EI
Sbjct: 516 KVSRMIQELGPEGTGN----FVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEI 571

Query: 453 YGCVVDLLGRAGRVKEAYEL----------IKSMPFKPDES 483
            G +   +G      ++ E+          IK + ++PD S
Sbjct: 572 NGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTS 612


>gi|224077710|ref|XP_002305373.1| predicted protein [Populus trichocarpa]
 gi|222848337|gb|EEE85884.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/547 (38%), Positives = 324/547 (59%), Gaps = 10/547 (1%)

Query: 19  PPIIK--QSLQSVKKSSIQSDPPLIPK-GPSILATN-LIKSYFDEGLIEEARTLFDEMPE 74
           P +IK    L  V+   +     L+ K G  +   N L+  Y + G +EEAR +FD M E
Sbjct: 126 PFVIKACSELLLVEYGRVLHGLTLVSKFGSHLFVLNSLLAMYMNCGEVEEARKVFDAMKE 185

Query: 75  RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALV 134
           + VVSW  MI GY      N A  VF +MV + V  +  ++ SVL AC  +K L     V
Sbjct: 186 KSVVSWNTMINGYFKNGFANTALVVFNQMVDSGVEIDGASVVSVLPACGYLKELEVGRRV 245

Query: 135 HGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGN 194
           HG+ ++E + G   V N+L+D+YA C  SMD ARLVF++M  ++ VSWT++I GY  +G+
Sbjct: 246 HGL-VEEKVLGKKIVSNALVDMYAKCG-SMDEARLVFDNMVERDVVSWTSMINGYILNGD 303

Query: 195 GYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNS 254
               L +FK M +EG+  N  + ++ + ACAS   +  G+ +H  V+K    S + V  S
Sbjct: 304 AKSALSLFKIMQIEGLRPNSVTIALILLACASLNNLKDGRCLHGWVMKQRLYSEVAVETS 363

Query: 255 ILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG-YEKSGSSECLNMFSKMKSERFSPN 313
           ++DMY + +CL  +   F   + K  + WN +++G      ++E + +F KM  E    N
Sbjct: 364 LIDMYAKCNCLGLSFSVFTRTSRKKTVPWNALLSGCVHNKLATEAIGLFKKMLMEGVEIN 423

Query: 314 CFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFS 373
             T  S++ A   LA L     +++ ++R G   N+ +A +LID+Y+KCG++  + KIF+
Sbjct: 424 AATCNSLLPAYGILADLQPVNNINSYLMRSGFVSNIQVATSLIDIYSKCGSLESAHKIFN 483

Query: 374 EM--SDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLV 431
            +    +D+  W+ ++ GYG HGHG+ A+ LF +MV+SGV+P+ + F +VL +CSHAG+V
Sbjct: 484 TIPVDVQDIFVWSIIIAGYGMHGHGETAVSLFKQMVQSGVKPNDVTFTSVLQSCSHAGMV 543

Query: 432 DEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490
           D+GL  FK M  D+   PN + Y C+VDLLGRAGR+ EAY+LIK+MPF P  +VWG LLG
Sbjct: 544 DDGLYLFKFMLKDHQTIPNDDHYTCMVDLLGRAGRMDEAYDLIKTMPFMPGHAVWGALLG 603

Query: 491 ACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKE 550
           AC  H    LG++AA  + +L+P   G Y++L+ +YAA G+WE+    R+ M  +G +K 
Sbjct: 604 ACVMHENVELGEVAARWLFELEPGNTGNYVLLAKLYAALGRWEDAENVRQRMDDIGLRKA 663

Query: 551 VGMSWIE 557
              S IE
Sbjct: 664 PAHSLIE 670



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 143/481 (29%), Positives = 249/481 (51%), Gaps = 19/481 (3%)

Query: 24  QSLQSVKKSSIQSDPPLIPKGP-SI-LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWT 81
           QSL S K    Q    LI  G  SI + + L+ +Y   G +  AR LFDE+ +R  + + 
Sbjct: 35  QSLTSTK----QLHAHLITSGLLSIDIRSVLVATYAHCGYVHNARKLFDELRQRGTLLYN 90

Query: 82  VMIAGYTSFNCHNQAWTVFVEMV-RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIK 140
            MI  Y +   + +A  VF+EM+   +  P+ +T   V+KAC  +  +    ++HG+ + 
Sbjct: 91  FMIKMYIAKGDYFEAMKVFLEMLGSKDCCPDNYTYPFVIKACSELLLVEYGRVLHGLTLV 150

Query: 141 EGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLG 200
                 ++V NSL+ +Y  C   ++ AR VF+ MK K+ VSW T+I GY  +G     L 
Sbjct: 151 SKFGSHLFVLNSLLAMYMNCG-EVEEARKVFDAMKEKSVVSWNTMINGYFKNGFANTALV 209

Query: 201 VFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYC 260
           VF +M+  GVE++  S    + AC     +  G+ +H  V +   G  + V N+++DMY 
Sbjct: 210 VFNQMVDSGVEIDGASVVSVLPACGYLKELEVGRRVHGLVEEKVLGKKI-VSNALVDMYA 268

Query: 261 RFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTS 319
           +   + +A   FD M E+D+++W ++I GY  +G ++  L++F  M+ E   PN  T   
Sbjct: 269 KCGSMDEARLVFDNMVERDVVSWTSMINGYILNGDAKSALSLFKIMQIEGLRPNSVTIAL 328

Query: 320 IIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD 379
           I+ ACA+L  L  G+ +H  ++++ L   +A+  +LIDMYAKC  +  S  +F+  S + 
Sbjct: 329 ILLACASLNNLKDGRCLHGWVMKQRLYSEVAVETSLIDMYAKCNCLGLSFSVFTRTSRKK 388

Query: 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439
            V W +++ G   +    EAI LF +M+  GV  +     ++L A  +  L D  L+   
Sbjct: 389 TVPWNALLSGCVHNKLATEAIGLFKKMLMEGVEINAATCNSLLPA--YGILAD--LQPVN 444

Query: 440 SMNDYNVN----PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK-PDESVWGPLLGACKE 494
           ++N Y +      N ++   ++D+  + G ++ A+++  ++P    D  VW  ++     
Sbjct: 445 NINSYLMRSGFVSNIQVATSLIDIYSKCGSLESAHKIFNTIPVDVQDIFVWSIIIAGYGM 504

Query: 495 H 495
           H
Sbjct: 505 H 505



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 113/390 (28%), Positives = 205/390 (52%), Gaps = 6/390 (1%)

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P      S+LK     +SL++   +H   I  GL  SI + + L+  YA C   + NAR 
Sbjct: 19  PKTTQYQSLLKHYGAAQSLTSTKQLHAHLITSGLL-SIDIRSVLVATYAHCGY-VHNARK 76

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEML-LEGVEMNPYSFSIAVRACASTG 228
           +F++++ +  + +  +I  Y   G+ +  + VF EML  +    + Y++   ++AC+   
Sbjct: 77  LFDELRQRGTLLYNFMIKMYIAKGDYFEAMKVFLEMLGSKDCCPDNYTYPFVIKACSELL 136

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            V +G+++H   +   FGS+L V+NS+L MY     + +A + FD M EK +++WNT+I 
Sbjct: 137 LVEYGRVLHGLTLVSKFGSHLFVLNSLLAMYMNCGEVEEARKVFDAMKEKSVVSWNTMIN 196

Query: 289 GYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           GY K+G ++  L +F++M       +  +  S++ AC  L  L  G++VH G+V   + G
Sbjct: 197 GYFKNGFANTALVVFNQMVDSGVEIDGASVVSVLPACGYLKELEVGRRVH-GLVEEKVLG 255

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
              ++NAL+DMYAKCG++ +++ +F  M +RD+V+WTSM+ GY  +G  K A+ LF  M 
Sbjct: 256 KKIVSNALVDMYAKCGSMDEARLVFDNMVERDVVSWTSMINGYILNGDAKSALSLFKIMQ 315

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
             G+RP+ +    +L AC+    + +G      +    +     +   ++D+  +   + 
Sbjct: 316 IEGLRPNSVTIALILLACASLNNLKDGRCLHGWVMKQRLYSEVAVETSLIDMYAKCNCLG 375

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRL 497
            ++ +      K     W  LL  C  ++L
Sbjct: 376 LSFSVFTRTSRKKTVP-WNALLSGCVHNKL 404



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 145/293 (49%), Gaps = 7/293 (2%)

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
           K +HA +I  G  S + + + ++  Y     + +A + FDE+ ++  + +N +I  Y   
Sbjct: 41  KQLHAHLITSGLLS-IDIRSVLVATYAHCGYVHNARKLFDELRQRGTLLYNFMIKMYIAK 99

Query: 294 GSS-ECLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLAL 351
           G   E + +F +M  S+   P+ +T+  +I AC+ L  +  G+ +H   +      +L +
Sbjct: 100 GDYFEAMKVFLEMLGSKDCCPDNYTYPFVIKACSELLLVEYGRVLHGLTLVSKFGSHLFV 159

Query: 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411
            N+L+ MY  CG + +++K+F  M ++ +V+W +M+ GY  +G    A+ +F++MV SGV
Sbjct: 160 LNSLLAMYMNCGEVEEARKVFDAMKEKSVVSWNTMINGYFKNGFANTALVVFNQMVDSGV 219

Query: 412 RPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471
             D    ++VL AC +   ++ G +    + +  V   K +   +VD+  + G + EA  
Sbjct: 220 EIDGASVVSVLPACGYLKELEVG-RRVHGLVEEKVLGKKIVSNALVDMYAKCGSMDEARL 278

Query: 472 LIKSMPFKPDESVWGPLLGA--CKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           +  +M  + D   W  ++            L     +++  L+PN +   +IL
Sbjct: 279 VFDNM-VERDVVSWTSMINGYILNGDAKSALSLFKIMQIEGLRPNSVTIALIL 330


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 227/615 (36%), Positives = 337/615 (54%), Gaps = 54/615 (8%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPER---DVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
            +   L+  Y   G  E AR +FDEM ER   D+VSW  ++A Y       +A  +F  M
Sbjct: 181 FVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERM 240

Query: 104 VRN-EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
             +  + P+A +L +VL AC  + + S    VHG A++ GL   ++V N+++D+YA C +
Sbjct: 241 TEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGM 300

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGY--------------------------------- 189
            M+ A  VF  MK K+ VSW  ++TGY                                 
Sbjct: 301 -MEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIA 359

Query: 190 --AHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIK----- 242
             A  G G+  L VF++MLL G E N  +    +  CAS G +  GK  H   IK     
Sbjct: 360 GYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNL 419

Query: 243 --HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD--LITWNTIIAGYEKSG-SSE 297
             +  G +L V+N+++DMY +      A   FD +  KD  ++TW  +I G  + G ++E
Sbjct: 420 DENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANE 479

Query: 298 CLNMFSKM-KSERFS-PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN-LALANA 354
            L +FS+M + + F  PN FT +  + ACA L AL  G+Q+HA ++R   +   L +AN 
Sbjct: 480 ALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANC 539

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
           LIDMY+K G++  ++ +F  M  R+ V+WTS+M GYG HG G+EA+++F EM K  + PD
Sbjct: 540 LIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPD 599

Query: 415 RIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELI 473
            + F+ VL ACSH+G+VD+G+ YF  MN D+ V P  E Y C+VDLL RAGR+ EA ELI
Sbjct: 600 GVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELI 659

Query: 474 KSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWE 533
           + MP KP  +VW  LL AC+ +    LG+ AA ++L+L+    G+Y +LSNIYA    W+
Sbjct: 660 RGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWK 719

Query: 534 EFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETA 593
           + A+ R +M+  G KK  G SW++ R     F A D     +Q +Y +L  L++ +    
Sbjct: 720 DVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALG 779

Query: 594 YEPDIDCLIHDLEGE 608
           Y PD    +HD++ E
Sbjct: 780 YVPDNRFALHDVDDE 794



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 131/511 (25%), Positives = 233/511 (45%), Gaps = 67/511 (13%)

Query: 24  QSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEM--PERDVVSWT 81
           +SL S + +  Q     +P  P    T++I  Y       +A ++   +      V  W 
Sbjct: 59  KSLASAELTHQQLLVQGLPHDP----THIISMYLTFNSPAKALSVLRRLHPSSHTVFWWN 114

Query: 82  VMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKE 141
            +I              ++  M R    P+ +T   VLKAC  + S    A VH +    
Sbjct: 115 QLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFAS 174

Query: 142 GLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK---NDVSWTTLITGYAHSGNGYGG 198
           G E +++V N L+ +Y  C  + +NAR VF++M+ +   + VSW +++  Y   G+    
Sbjct: 175 GFEWNVFVGNGLVSMYGRCG-AWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRA 233

Query: 199 LGVFKEMLLE-GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILD 257
           + +F+ M  + G+  +  S    + ACAS G  S GK +H   ++ G   ++ V N+++D
Sbjct: 234 MKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVD 293

Query: 258 MYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERF------ 310
           MY +   + +AN+ F+ M  KD+++WN ++ GY + G   + L +F K++ E+       
Sbjct: 294 MYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVT 353

Query: 311 -----------------------------SPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
                                         PN  T  S+++ CA+   L  G++ H   +
Sbjct: 354 WSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAI 413

Query: 342 R--RGLDGN-----LALANALIDMYAKCGNISDSQKIFSEM--SDRDLVTWTSMMIGYGA 392
           +    LD N     L + NALIDMY+KC +   ++ +F  +   DR +VTWT ++ G   
Sbjct: 414 KWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQ 473

Query: 393 HGHGKEAIELFDEMVKSG--VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK 450
           HG   EA+ELF +M++    V P+       L AC+  G     L++ + ++ Y +    
Sbjct: 474 HGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLG----ALRFGRQIHAYVLRNRF 529

Query: 451 E-----IYGCVVDLLGRAGRVKEAYELIKSM 476
           E     +  C++D+  ++G V  A  +  +M
Sbjct: 530 ESAMLFVANCLIDMYSKSGDVDAARVVFDNM 560



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 105/346 (30%), Positives = 173/346 (50%), Gaps = 24/346 (6%)

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEG------SIYVE-NSLMDVYATCCISMDNAR 168
           S++   CK   SL++A L H   + +GL        S+Y+  NS     +       ++ 
Sbjct: 52  STLFHQCK---SLASAELTHQQLLVQGLPHDPTHIISMYLTFNSPAKALSVLRRLHPSSH 108

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            VF    W     W  LI    H G     L +++ M   G   + Y+F   ++AC    
Sbjct: 109 TVF----W-----WNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIP 159

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK---DLITWNT 285
               G  +HA V   GF  N+ V N ++ MY R     +A Q FDEM E+   DL++WN+
Sbjct: 160 SFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNS 219

Query: 286 IIAGYEKSGSS-ECLNMFSKMKSER-FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           I+A Y + G S   + MF +M  +    P+  +  +++ ACA++ A S G+QVH   +R 
Sbjct: 220 IVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRS 279

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           GL  ++ + NA++DMYAKCG + ++ K+F  M  +D+V+W +M+ GY   G   +A+ LF
Sbjct: 280 GLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLF 339

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN 449
           +++ +  +  + + + AV+   +  GL  E L  F+ M      PN
Sbjct: 340 EKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPN 385



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 132/270 (48%), Gaps = 27/270 (10%)

Query: 14  HCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATN-LIKSYFDEGLIEEARTLFDEM 72
           HCH I  I+            ++DP     G  ++  N LI  Y      + AR +FD +
Sbjct: 409 HCHAIKWILNLD---------ENDP-----GDDLMVINALIDMYSKCKSPKAARAMFDLI 454

Query: 73  PERD--VVSWTVMIAGYTSFNCHNQAWTVFVEMVR--NEVNPNAFTLSSVLKACKGMKSL 128
           P +D  VV+WTV+I G       N+A  +F +M++  N V PNAFT+S  L AC  + +L
Sbjct: 455 PPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGAL 514

Query: 129 SNAALVHGMAIKEGLEGS-IYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLIT 187
                +H   ++   E + ++V N L+D+Y+     +D AR+VF++M  +N VSWT+L+T
Sbjct: 515 RFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSG-DVDAARVVFDNMHQRNGVSWTSLMT 573

Query: 188 GYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGS 247
           GY   G G   L +F EM    +  +  +F + + AC+ +G V  G         +G   
Sbjct: 574 GYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQG-----INYFNGMNK 628

Query: 248 NLPVMNSILDMYCRFDCLSDANQYFDEMTE 277
           +  V+       C  D LS A +  DE  E
Sbjct: 629 DFGVVPGAEHYACMVDLLSRAGR-LDEAME 657


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/554 (36%), Positives = 316/554 (57%), Gaps = 3/554 (0%)

Query: 57  FDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLS 116
            D G    ++ +F ++ E ++  W  MI G  S +C + A  ++  M      PN FT+ 
Sbjct: 59  LDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIP 118

Query: 117 SVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW 176
            VLKAC     +     +H + +K G +  ++V+ SL+ +Y  C  + D+A  VF+D+  
Sbjct: 119 FVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKC-DNFDDALKVFDDIPD 177

Query: 177 KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLI 236
           KN VSWT +ITGY  SG+    +G FK++L  G++ + +S    + ACA  G  + G+ I
Sbjct: 178 KNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWI 237

Query: 237 HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-S 295
              +   G G N+ V  S+LDMY +   L  AN  F  M EKD+++W+T+I GY  +G  
Sbjct: 238 DRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLP 297

Query: 296 SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
            + L++F +M+SE   P+C+T   +++ACATL AL  G    + + R     N  L  AL
Sbjct: 298 QQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTAL 357

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           IDMY+KCG+++ + +IF+ M  +D V W +MM+G   +GH K    LF  + K G+RPD 
Sbjct: 358 IDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDE 417

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
             F+ +L  C+H G V+EG ++F +M   +++ P+ E YGC+VDLLGRAG + EA++LI 
Sbjct: 418 NTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLIN 477

Query: 475 SMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEE 534
           +MP KP+  VWG LLG CK H+  +L +    ++++L+P   G Y+ LSNIY+   +WEE
Sbjct: 478 NMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEE 537

Query: 535 FAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAY 594
             K R  M+    +K    SWIE+   V  F+  DK    ++ +Y  L+ L R +    +
Sbjct: 538 AEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGH 597

Query: 595 EPDIDCLIHDLEGE 608
            P  + ++ D+E E
Sbjct: 598 VPTTEFVLFDIEEE 611



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 191/365 (52%), Gaps = 4/365 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + T+L+  Y      ++A  +FD++P+++VVSWT +I GY S     +A   F +++  
Sbjct: 150 FVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEM 209

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + P++F+L  VL AC  +   ++   +       G+  +++V  SL+D+Y  C  +++ 
Sbjct: 210 GLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCG-NLER 268

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A L+F+ M  K+ VSW+T+I GYA +G     L +F +M  E ++ + Y+    + ACA+
Sbjct: 269 ANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACAT 328

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G +  G    + + ++ F SN  +  +++DMY +   ++ A + F  M  KD + WN +
Sbjct: 329 LGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAM 388

Query: 287 IAGYEKSGSSECL-NMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-G 344
           + G   +G ++ + ++FS ++     P+  TF  ++  C     ++ G+Q    + R   
Sbjct: 389 MVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFS 448

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHGHGKEAIELF 403
           L  ++     ++D+  + G ++++ ++ + M  + + V W +++ G   H     A ++ 
Sbjct: 449 LTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVL 508

Query: 404 DEMVK 408
            ++++
Sbjct: 509 KKLIE 513



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 81/191 (42%), Gaps = 1/191 (0%)

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
           + +HA ++R  LD +  L N ++      G+ + S+ +FS++ + ++  W +M+ G  + 
Sbjct: 33  KHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSK 92

Query: 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIY 453
               +AI L+  M   G  P+      VL AC+    V  GLK    +     + +  + 
Sbjct: 93  DCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVK 152

Query: 454 GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKE-HRLPNLGKLAALRVLDLK 512
             ++ L  +     +A ++   +P K   S    + G     H    +G    L  + LK
Sbjct: 153 TSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLK 212

Query: 513 PNMMGTYIILS 523
           P+      +L+
Sbjct: 213 PDSFSLVKVLA 223


>gi|356528519|ref|XP_003532850.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Glycine max]
          Length = 849

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/551 (36%), Positives = 313/551 (56%), Gaps = 2/551 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +   +I  Y     ++  R LF+ + ++DVVSWT MIAG    + H  A  +FVEMVR  
Sbjct: 292 VVNGIIDFYLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKG 351

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
             P+AF  +SVL +C  +++L     VH  AIK  ++   +V+N L+D+YA C  S+ NA
Sbjct: 352 WKPDAFGCTSVLNSCGSLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCD-SLTNA 410

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R VF+ +   N VS+  +I GY+        L +F+EM L        +F   +   +S 
Sbjct: 411 RKVFDLVAAINVVSYNAMIEGYSRQDKLVEALDLFREMRLSLSPPTLLTFVSLLGLSSSL 470

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +     IH  +IK G   +    ++++D+Y +  C+ DA   F+E+ ++D++ WN + 
Sbjct: 471 FLLELSSQIHCLIIKFGVSLDSFAGSALIDVYSKCSCVGDARLVFEEIYDRDIVVWNAMF 530

Query: 288 AGYEKS-GSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           +GY +   + E L ++  ++  R  PN FTF ++IAA + +A+L  GQQ H  +++ GLD
Sbjct: 531 SGYSQQLENEESLKLYKDLQMSRLKPNEFTFAAVIAAASNIASLRHGQQFHNQVIKMGLD 590

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            +  + N+L+DMYAKCG+I +S K FS  + RD+  W SM+  Y  HG   +A+E+F+ M
Sbjct: 591 DDPFVTNSLVDMYAKCGSIEESHKAFSSTNQRDIACWNSMISTYAQHGDAAKALEVFERM 650

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
           +  GV+P+ + F+ +L+ACSHAGL+D G  +F+SM+ + + P  + Y C+V LLGRAG++
Sbjct: 651 IMEGVKPNYVTFVGLLSACSHAGLLDLGFHHFESMSKFGIEPGIDHYACMVSLLGRAGKI 710

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            EA E +K MP KP   VW  LL AC+      LG  AA   +   P   G+YI+LSNI+
Sbjct: 711 YEAKEFVKKMPIKPAAVVWRSLLSACRVSGHVELGTYAAEMAISCDPADSGSYILLSNIF 770

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           A++G W      R+ M      KE G SWIEV ++V  FIA D     +  +  VL+ LI
Sbjct: 771 ASKGMWASVRMVREKMDMSRVVKEPGWSWIEVNNEVHRFIARDTAHRDSTLISLVLDNLI 830

Query: 587 RHMNETAYEPD 597
             +    Y P+
Sbjct: 831 LQIKGFGYVPN 841



 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 124/375 (33%), Positives = 215/375 (57%), Gaps = 3/375 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            L   L+ +Y    L  +A+ LFD MP R++V+W+ M++ YT      +A  +F   +R+
Sbjct: 88  FLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQHGYSVEALLLFCRFMRS 147

Query: 107 -EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
               PN + L+SV++AC  + +LS A  +HG  +K G    +YV  SL+D YA     +D
Sbjct: 148 CSEKPNEYILASVVRACTQLGNLSQALQLHGFVVKGGFVQDVYVGTSLIDFYAKRGY-VD 206

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            ARL+F+ +K K  V+WT +I GYA  G     L +F +M    V  + Y  S  + AC+
Sbjct: 207 EARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVISSVLSACS 266

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
              ++  GK IH  V++ GF  ++ V+N I+D Y +   +    + F+ + +KD+++W T
Sbjct: 267 MLEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDKDVVSWTT 326

Query: 286 IIAG-YEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +IAG  + S   + +++F +M  + + P+ F  TS++ +C +L AL  G+QVHA  ++  
Sbjct: 327 MIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQALQKGRQVHAYAIKVN 386

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           +D +  + N LIDMYAKC ++++++K+F  ++  ++V++ +M+ GY       EA++LF 
Sbjct: 387 IDNDDFVKNGLIDMYAKCDSLTNARKVFDLVAAINVVSYNAMIEGYSRQDKLVEALDLFR 446

Query: 405 EMVKSGVRPDRIVFM 419
           EM  S   P  + F+
Sbjct: 447 EMRLSLSPPTLLTFV 461



 Score =  225 bits (574), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 122/449 (27%), Positives = 238/449 (53%), Gaps = 3/449 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + T+LI  Y   G ++EAR +FD +  +  V+WT +IAGY        +  +F +M   +
Sbjct: 191 VGTSLIDFYAKRGYVDEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGD 250

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V P+ + +SSVL AC  ++ L     +HG  ++ G +  + V N ++D Y  C   +   
Sbjct: 251 VYPDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDFYLKCH-KVKTG 309

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R +FN +  K+ VSWTT+I G   +      + +F EM+ +G + + +  +  + +C S 
Sbjct: 310 RKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSL 369

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  G+ +HA  IK    ++  V N ++DMY + D L++A + FD +   +++++N +I
Sbjct: 370 QALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVAAINVVSYNAMI 429

Query: 288 AGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            GY +     E L++F +M+     P   TF S++   ++L  L    Q+H  I++ G+ 
Sbjct: 430 EGYSRQDKLVEALDLFREMRLSLSPPTLLTFVSLLGLSSSLFLLELSSQIHCLIIKFGVS 489

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            +    +ALID+Y+KC  + D++ +F E+ DRD+V W +M  GY      +E+++L+ ++
Sbjct: 490 LDSFAGSALIDVYSKCSCVGDARLVFEEIYDRDIVVWNAMFSGYSQQLENEESLKLYKDL 549

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
             S ++P+   F AV+ A S+   +  G ++   +    ++ +  +   +VD+  + G +
Sbjct: 550 QMSRLKPNEFTFAAVIAAASNIASLRHGQQFHNQVIKMGLDDDPFVTNSLVDMYAKCGSI 609

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEH 495
           +E+++   S   + D + W  ++    +H
Sbjct: 610 EESHKAFSSTN-QRDIACWNSMISTYAQH 637



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 198/390 (50%), Gaps = 4/390 (1%)

Query: 134 VHGMAIKEGL-EGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHS 192
           +H   +  G  +  +++ N+L+  Y+   +  D  +L F+ M  +N V+W+++++ Y   
Sbjct: 73  IHAHIVVLGFHQHDVFLVNTLLHAYSKMNLQSDAQKL-FDTMPHRNLVTWSSMVSMYTQH 131

Query: 193 GNGYGGLGVFKEMLLEGVEM-NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251
           G     L +F   +    E  N Y  +  VRAC   G +S    +H  V+K GF  ++ V
Sbjct: 132 GYSVEALLLFCRFMRSCSEKPNEYILASVVRACTQLGNLSQALQLHGFVVKGGFVQDVYV 191

Query: 252 MNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSEC-LNMFSKMKSERF 310
             S++D Y +   + +A   FD +  K  +TW  IIAGY K G SE  L +F++M+    
Sbjct: 192 GTSLIDFYAKRGYVDEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDV 251

Query: 311 SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQK 370
            P+ +  +S+++AC+ L  L  G+Q+H  ++RRG D ++++ N +ID Y KC  +   +K
Sbjct: 252 YPDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRK 311

Query: 371 IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           +F+ + D+D+V+WT+M+ G   +    +A++LF EMV+ G +PD     +VL +C     
Sbjct: 312 LFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQA 371

Query: 431 VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490
           + +G +        N++ +  +   ++D+  +   +  A ++   +      S    + G
Sbjct: 372 LQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVAAINVVSYNAMIEG 431

Query: 491 ACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520
             ++ +L     L     L L P  + T++
Sbjct: 432 YSRQDKLVEALDLFREMRLSLSPPTLLTFV 461



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 128/253 (50%), Gaps = 2/253 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S   + LI  Y     + +AR +F+E+ +RD+V W  M +GY+    + ++  ++ ++  
Sbjct: 492 SFAGSALIDVYSKCSCVGDARLVFEEIYDRDIVVWNAMFSGYSQQLENEESLKLYKDLQM 551

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           + + PN FT ++V+ A   + SL +    H   IK GL+   +V NSL+D+YA C  S++
Sbjct: 552 SRLKPNEFTFAAVIAAASNIASLRHGQQFHNQVIKMGLDDDPFVTNSLVDMYAKCG-SIE 610

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            +   F+    ++   W ++I+ YA  G+    L VF+ M++EGV+ N  +F   + AC+
Sbjct: 611 ESHKAFSSTNQRDIACWNSMISTYAQHGDAAKALEVFERMIMEGVKPNYVTFVGLLSACS 670

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD-LITWN 284
             G +  G     ++ K G    +     ++ +  R   + +A ++  +M  K   + W 
Sbjct: 671 HAGLLDLGFHHFESMSKFGIEPGIDHYACMVSLLGRAGKIYEAKEFVKKMPIKPAAVVWR 730

Query: 285 TIIAGYEKSGSSE 297
           ++++    SG  E
Sbjct: 731 SLLSACRVSGHVE 743


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/549 (35%), Positives = 324/549 (59%), Gaps = 6/549 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++ ++ +  Y    + E+A  LFDEMPERDV SW  +I+ Y       +A  +F EM  +
Sbjct: 142 VVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVS 201

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMD 165
              P++ TL++V+ +C  +  L     +H   ++ G     +V ++L+D+Y  C C+ M 
Sbjct: 202 GFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEM- 260

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A+ VF  ++ KN VSW ++I GY+  G+    + +F+ M  EG+     + S  + AC+
Sbjct: 261 -AKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACS 319

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
            +  +  GK IH  +I++   +++ V +S++D+Y +   +  A   F  M + ++++WN 
Sbjct: 320 RSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNV 379

Query: 286 IIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I+GY K GS  E L +F+ M+     P+  TFTS++ AC+ LA L  G+++H  I+   
Sbjct: 380 MISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESK 439

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           L+ N  +  AL+DMYAKCG + ++  IF+++ +RD V+WTSM+  YG+HG   EA++LF+
Sbjct: 440 LEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFE 499

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRA 463
           +M +S  +PD++ F+A+L+ACSHAGLVDEG  YF  M  +Y   P  E Y C++DLLGR 
Sbjct: 500 KMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRV 559

Query: 464 GRVKEAYELIKSMP-FKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           GR++EAYE+++  P  + D  +   L  AC  H+  +LG+     +++  P+   TYIIL
Sbjct: 560 GRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYIIL 619

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           SN+YA+  KW+E  K R  ++ +G KK  G SWIEV  ++  F+  DK       +Y  +
Sbjct: 620 SNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEVGKRIHPFVVEDKSHPQADMIYECM 679

Query: 583 EMLIRHMNE 591
            +L  H+ +
Sbjct: 680 SILASHVEK 688



 Score =  248 bits (634), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 142/481 (29%), Positives = 253/481 (52%), Gaps = 7/481 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPER-DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           L  +LI  YF   L + A+ +F  +    D+  W  ++A  T      +   VF  ++  
Sbjct: 40  LCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHF 99

Query: 107 E-VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             + P+AFT  SVLKAC G+  +    +VH   IK G    + V +S + +YA C +  D
Sbjct: 100 PYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFED 159

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
             +L F++M  ++  SW  +I+ Y   G     L +F+EM + G + +  + +  + +CA
Sbjct: 160 AIKL-FDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCA 218

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               +  GK IH  +++ GF  +  V ++++DMY +  CL  A + F+++  K++++WN+
Sbjct: 219 RLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNS 278

Query: 286 IIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +IAGY   G S+ C+ +F +M  E   P   T +SI+ AC+    L  G+ +H  I+R  
Sbjct: 279 MIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNR 338

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           ++ ++ + ++LID+Y KCGNI  ++ +F  M   ++V+W  M+ GY   G   EA+ +F 
Sbjct: 339 VEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFT 398

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
           +M K+GV+PD I F +VL ACS   ++++G +    + +  +  N+ + G ++D+  + G
Sbjct: 399 DMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCG 458

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEH--RLPNLGKLAALRVLDLKPNMMGTYIIL 522
            V EA  +   +P + D   W  ++ A   H      L     ++  D KP+ +    IL
Sbjct: 459 AVDEALHIFNQLP-ERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAIL 517

Query: 523 S 523
           S
Sbjct: 518 S 518



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 116/370 (31%), Positives = 206/370 (55%), Gaps = 12/370 (3%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM 174
           L S+LK C   K L    L+H   +  GL+ +I +  SL+++Y +C +   +A+LVF  +
Sbjct: 6   LLSLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHL-FQSAKLVFQTI 64

Query: 175 KWKNDVS-WTTLITGYAHSGNGYGGLGVFKEML-LEGVEMNPYSFSIAVRACASTGWVSF 232
           +   D++ W  L+     +     GL VF  +L    ++ + +++   ++AC+  G V +
Sbjct: 65  ENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGY 124

Query: 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEK 292
           GK++H  VIK GF  ++ VM+S + MY + +   DA + FDEM E+D+ +WN +I+ Y +
Sbjct: 125 GKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQ 184

Query: 293 SGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLAL 351
            G  E  L +F +MK   F P+  T T++I++CA L  L  G+++H  +VR G   +  +
Sbjct: 185 DGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFV 244

Query: 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411
           ++AL+DMY KCG +  ++++F ++  +++V+W SM+ GY   G  K  IELF  M + G+
Sbjct: 245 SSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGI 304

Query: 412 RPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE----IYGCVVDLLGRAGRVK 467
           RP      ++L ACS +      L+  K ++ Y +    E    +   ++DL  + G + 
Sbjct: 305 RPTLTTLSSILMACSRS----VNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIG 360

Query: 468 EAYELIKSMP 477
            A  + ++MP
Sbjct: 361 SAENVFQNMP 370



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 136/262 (51%), Gaps = 3/262 (1%)

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-D 279
           ++ C  + ++  GKLIH  ++  G  +N+ +  S++++Y        A   F  +    D
Sbjct: 10  LKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLD 69

Query: 280 LITWNTIIAGYEKSGSS-ECLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
           +  WN ++A   K+    E L +F ++       P+ FT+ S++ AC+ L  +  G+ VH
Sbjct: 70  ITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVH 129

Query: 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
             +++ G   ++ + ++ + MYAKC    D+ K+F EM +RD+ +W +++  Y   G  +
Sbjct: 130 THVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPE 189

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVV 457
           +A+ELF+EM  SG +PD +    V+++C+    ++ G +    +       +  +   +V
Sbjct: 190 KALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALV 249

Query: 458 DLLGRAGRVKEAYELIKSMPFK 479
           D+ G+ G ++ A E+ + +  K
Sbjct: 250 DMYGKCGCLEMAKEVFEQIQRK 271


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/628 (33%), Positives = 342/628 (54%), Gaps = 71/628 (11%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
            ++ ++   G ++ AR +FDE+P+ D VSWT MI GY        A   F+ MV + ++P
Sbjct: 84  TILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISP 143

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
             FT ++VL +C   ++L     VH   +K G  G + V NSL+++YA C  S+  A++V
Sbjct: 144 TQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSV-MAKVV 202

Query: 171 FNDMKWKND-------------------------------VSWTTLITGYAHSGNGYGGL 199
           F+ M+ K+                                VSW ++ITGY H G     L
Sbjct: 203 FDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRAL 262

Query: 200 GVFKEMLLEGVEMNPYSFSI--AVRACASTGWVSFGKLIHAAVIKH------GFGSNL-- 249
             F  ML +   + P  F++   + ACA+   +  GK IHA +++         G+ L  
Sbjct: 263 ETFSFML-KSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALIS 321

Query: 250 --------------------PVMN-----SILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
                               P +N     S+LD Y +   +  A   FD +  +D++ W 
Sbjct: 322 MYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWT 381

Query: 285 TIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +I GY ++G  S+ L +F  M  E   PN +T  ++++  ++LA+L  G+Q+HA  +R 
Sbjct: 382 AMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRL 441

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEM-SDRDLVTWTSMMIGYGAHGHGKEAIEL 402
               ++++ NALI MY++ G+I D++KIF+ + S RD +TWTSM++    HG G EAIEL
Sbjct: 442 EEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIEL 501

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLG 461
           F++M++  ++PD I ++ VL+AC+H GLV++G  YF  M N +N+ P    Y C++DLLG
Sbjct: 502 FEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLG 561

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           RAG ++EAY  I++MP +PD   WG LL +C+ H+  +L K+AA ++L + PN  G Y+ 
Sbjct: 562 RAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLA 621

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGV 581
           L+N  +A GKWE+ AK RK M+    KKE G SW+++++KV  F   D +      +Y +
Sbjct: 622 LANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGVEDALHPQRDAIYCM 681

Query: 582 LEMLIRHMNETAYEPDIDCLIHDLEGET 609
           +  + + + +  + PD + ++HDLE E 
Sbjct: 682 ISKIWKEIKKMGFIPDTNSVLHDLEQEV 709



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/466 (26%), Positives = 216/466 (46%), Gaps = 76/466 (16%)

Query: 151 NSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGV 210
           N+++  +A    ++D+AR VF+++   + VSWTT+I GY H G     +  F  M+  G+
Sbjct: 83  NTILSAHAKAG-NLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGI 141

Query: 211 EMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMY----------- 259
               ++F+  + +CA+   +  GK +H+ V+K G    +PV NS+L+MY           
Sbjct: 142 SPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKV 201

Query: 260 -----------------------CRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS 296
                                  C+FD    A   FD+MT+ D+++WN+II GY   G  
Sbjct: 202 VFDRMRLKDTSTWNTMISMHMQFCQFDL---ALALFDQMTDPDIVSWNSIITGYCHQGYD 258

Query: 297 -ECLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
              L  FS M KS    P+ FT  S+++ACA   +L  G+Q+HA IVR  +D   A+ NA
Sbjct: 259 IRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNA 318

Query: 355 LIDMYAKC---------------------------------GNISDSQKIFSEMSDRDLV 381
           LI MYAK                                  G+I  ++ IF  +  RD+V
Sbjct: 319 LISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVV 378

Query: 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441
            WT+M++GY  +G   +A+ LF  M++ G +P+     AVL+  S    +D G +     
Sbjct: 379 AWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVA 438

Query: 442 NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN-- 499
                  +  +   ++ +  R+G +K+A ++   +    D   W  ++ +  +H L N  
Sbjct: 439 IRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEA 498

Query: 500 LGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545
           +     +  ++LKP+ + TY+ + +     G  E+   +  +M+ +
Sbjct: 499 IELFEKMLRINLKPDHI-TYVGVLSACTHVGLVEQGKSYFNLMKNV 543



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 88/312 (28%), Positives = 156/312 (50%), Gaps = 73/312 (23%)

Query: 232 FGKLIHAAVIKHGFGS-NLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
            G+ IHA +IKHG     + + N++L++Y +    SDA++ FDEM  K   +WNTI++ +
Sbjct: 30  IGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAH 89

Query: 291 EKSGS--------------------------------SECLNMFSKMKSERFSPNCFTFT 318
            K+G+                                   ++ F +M S   SP  FTFT
Sbjct: 90  AKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFT 149

Query: 319 SIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGN------------IS 366
           +++A+CA   AL  G++VH+ +V+ G  G + +AN+L++MYAKCG+            + 
Sbjct: 150 NVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLK 209

Query: 367 DSQK-------------------IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           D+                     +F +M+D D+V+W S++ GY   G+   A+E F  M+
Sbjct: 210 DTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFML 269

Query: 408 K-SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCV----VDLLGR 462
           K S ++PD+    +VL+AC++     E LK  K ++ + V  + +I G V    + +  +
Sbjct: 270 KSSSLKPDKFTLGSVLSACANR----ESLKLGKQIHAHIVRADVDIAGAVGNALISMYAK 325

Query: 463 AGRVKEAYELIK 474
           +G V+ A+ +++
Sbjct: 326 SGAVEVAHRIVE 337



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 153/311 (49%), Gaps = 17/311 (5%)

Query: 42  PKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFV 101
           P    I  T+L+  YF  G I+ AR +FD +  RDVV+WT MI GY      + A  +F 
Sbjct: 342 PSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFR 401

Query: 102 EMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
            M+R    PN +TL++VL     + SL +   +H +AI+     S+ V N+L+ +Y+   
Sbjct: 402 LMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSG 461

Query: 162 ISMDNARLVFNDM-KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
            S+ +AR +FN +  +++ ++WT++I   A  G G   + +F++ML   ++ +  ++   
Sbjct: 462 -SIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGV 520

Query: 221 VRACASTGWVSFGKLIHAAVIK--HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TE 277
           + AC   G V  GK  +  ++K  H           ++D+  R   L +A  +   M  E
Sbjct: 521 LSACTHVGLVEQGK-SYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIE 579

Query: 278 KDLITWNTIIAGYEKSGSSECLNMFSKMKSERF---SPNCFTFTSIIAACATLAALSCGQ 334
            D++ W ++++        +     +K+ +E+     PN     + +A   TL+A  CG+
Sbjct: 580 PDVVAWGSLLSSCRVHKYVD----LAKVAAEKLLLIDPN--NSGAYLALANTLSA--CGK 631

Query: 335 QVHAGIVRRGL 345
              A  VR+ +
Sbjct: 632 WEDAAKVRKSM 642


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/565 (34%), Positives = 320/565 (56%), Gaps = 4/565 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            L T LI +    G I  AR +FD++P   +  W  +I GY+  N    A  ++  M   
Sbjct: 54  FLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLA 113

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V+P++FT   +LKAC G+  L     VH    + G +  ++V+N L+ +YA C   + +
Sbjct: 114 RVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKC-RRLGS 172

Query: 167 ARLVFNDMKW--KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           AR VF  +    +  VSWT +++ YA +G     L +F  M    V+ +  +    + A 
Sbjct: 173 ARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAF 232

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
                +  G+ IHA+V+K G      ++ S+  MY +   ++ A   FD+M   +LI WN
Sbjct: 233 TCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWN 292

Query: 285 TIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +I+GY K+G + E ++MF +M ++   P+  + TS I+ACA + +L   + ++  + R 
Sbjct: 293 AMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRS 352

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
               ++ +++ALIDM+AKCG++  ++ +F    DRD+V W++M++GYG HG  +EAI L+
Sbjct: 353 DYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLY 412

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
             M + GV P+ + F+ +L AC+H+G+V EG  +F  M D+ +NP ++ Y CV+DLLGRA
Sbjct: 413 RAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLMADHKINPQQQHYACVIDLLGRA 472

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G + +AYE+IK MP +P  +VWG LL ACK+HR   LG+ AA ++  + P+  G Y+ LS
Sbjct: 473 GHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLS 532

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           N+YAA   W+  A+ R  M+  G  K+VG SW+EVR ++  F   DK     + +   +E
Sbjct: 533 NLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVE 592

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGE 608
            +   + E  +  + D  +HDL  E
Sbjct: 593 WIESRLKEGGFVANKDASLHDLNDE 617



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 133/259 (51%), Gaps = 4/259 (1%)

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
           K IHA ++  G   +  ++  ++     F  ++ A Q FD++    +  WN II GY ++
Sbjct: 38  KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRN 97

Query: 294 GS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
               + L M+S M+  R SP+ FTF  ++ AC+ L+ L  G+ VHA + R G D ++ + 
Sbjct: 98  NHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQ 157

Query: 353 NALIDMYAKCGNISDSQKIFS--EMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           N LI +YAKC  +  ++ +F    + +R +V+WT+++  Y  +G   EA+E+F  M K  
Sbjct: 158 NGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMD 217

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470
           V+PD +  ++VL A +    + +G     S+    +    ++   +  +  + G+V  A 
Sbjct: 218 VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAK 277

Query: 471 ELIKSMPFKPDESVWGPLL 489
            L   M   P+  +W  ++
Sbjct: 278 ILFDKMK-SPNLILWNAMI 295



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 104/213 (48%), Gaps = 12/213 (5%)

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           + S+I +    A L   +Q+HA ++  GL  +  L   LI   +  G+I+ ++++F ++ 
Sbjct: 24  YASLIDSATHKAQL---KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLP 80

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
              +  W +++ GY  + H ++A+ ++  M  + V PD   F  +L ACS  GL    + 
Sbjct: 81  RPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACS--GLSHLQMG 138

Query: 437 YFKSMNDYNVNPNKEIY--GCVVDLLGRAGRVKEAYELIKSMPFKPDESV--WGPLLGAC 492
            F     + +  + +++    ++ L  +  R+  A  + + +P  P+ ++  W  ++ A 
Sbjct: 139 RFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPL-PERTIVSWTAIVSAY 197

Query: 493 KEHRLP--NLGKLAALRVLDLKPNMMGTYIILS 523
            ++  P   L   + +R +D+KP+ +    +L+
Sbjct: 198 AQNGEPMEALEIFSHMRKMDVKPDWVALVSVLN 230


>gi|357121739|ref|XP_003562575.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 770

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/578 (35%), Positives = 336/578 (58%), Gaps = 23/578 (3%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            +AT+L+  Y   G  ++AR LFDEMPE++VV+WT +I GYT  +    A  VFVEM++ 
Sbjct: 114 FVATSLVNVYMRCGNSQDARNLFDEMPEKNVVTWTALITGYTLNSQPVLALEVFVEMLKL 173

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
              P+ +TL  +L AC    ++     VHG  IK G      + NSL  +Y T   ++++
Sbjct: 174 GRYPSDYTLGGMLSACVASHNIDLGKQVHGYTIKYGAASITSIGNSLCRLY-TKSGNLES 232

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYG-GLGVFKEMLLEGVEMNPYSFSIAVRACA 225
               F  +  KN ++WTT+I+  A   N    GL +F +ML   V  N ++ +  +  C 
Sbjct: 233 GIRAFKRIPDKNVITWTTMISACAEDENYTELGLNLFLDMLKGEVMPNEFTLTSVMSLCG 292

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           ++  ++ GK +     K G  +NLPV NS + +Y R     +A + F+EM +  +ITWN 
Sbjct: 293 TSLDMNLGKQVQGFCFKIGCATNLPVKNSTMYLYLRKGETEEAMRLFEEMEDNSVITWNA 352

Query: 286 IIAGYE------------KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG 333
           +I+G+             +S   + L +F  +      P+ FTF+SI++ C+T+ AL  G
Sbjct: 353 MISGFAQIMDSAKDDLHARSRGFQALKIFRDLVRSAMKPDLFTFSSILSVCSTMMALEQG 412

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
           +Q+HA  ++ G   ++ + +AL++MY KCG I  + K F EM  R LVTWTSM+ GY  H
Sbjct: 413 EQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEYATKAFVEMPTRTLVTWTSMISGYSQH 472

Query: 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEI 452
           G   +AI+LF++M+ +G +P+ I F+++L+ACS+AGLV+E ++YF  M N+Y++ P  + 
Sbjct: 473 GRPHDAIQLFEDMILAGAKPNEITFVSLLSACSYAGLVEEAMRYFDMMQNEYHIEPLMDH 532

Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLK 512
           YGC++D+  R GR+ +AY  IK   F+P+E++W  L+  C+ H    L   AA R+L+LK
Sbjct: 533 YGCMIDMFVRLGRLDDAYAFIKRKGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLLELK 592

Query: 513 PNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGM----SWIEVRDKVCGFIAN 568
           P ++ TY++L N+Y + G+W + A+ RK+ +     +++G+    SWI +RDKV  F A+
Sbjct: 593 PKVVETYVLLLNMYISTGRWRDVARVRKLSK----HEDLGILRDRSWITIRDKVYFFKAD 648

Query: 569 DKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
           D+    +  +Y +LE L+       YEP  +  ++D E
Sbjct: 649 DRSHPQSTELYQLLETLLEKAKAIGYEPYQNTELYDSE 686



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 121/441 (27%), Positives = 216/441 (48%), Gaps = 18/441 (4%)

Query: 118 VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK 177
           +L  C    SL  A  +HG  +K G    I+V  SL++VY  C  S D AR +F++M  K
Sbjct: 84  LLHRCIETGSLGGAKALHGHMVKTGTIVDIFVATSLVNVYMRCGNSQD-ARNLFDEMPEK 142

Query: 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIH 237
           N V+WT LITGY  +      L VF EML  G   + Y+    + AC ++  +  GK +H
Sbjct: 143 NVVTWTALITGYTLNSQPVLALEVFVEMLKLGRYPSDYTLGGMLSACVASHNIDLGKQVH 202

Query: 238 AAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG-YEKSGSS 296
              IK+G  S   + NS+  +Y +   L    + F  + +K++ITW T+I+   E    +
Sbjct: 203 GYTIKYGAASITSIGNSLCRLYTKSGNLESGIRAFKRIPDKNVITWTTMISACAEDENYT 262

Query: 297 EC-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
           E  LN+F  M      PN FT TS+++ C T   ++ G+QV     + G   NL + N+ 
Sbjct: 263 ELGLNLFLDMLKGEVMPNEFTLTSVMSLCGTSLDMNLGKQVQGFCFKIGCATNLPVKNST 322

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG-----------AHGHGKEAIELFD 404
           + +Y + G   ++ ++F EM D  ++TW +M+ G+            A   G +A+++F 
Sbjct: 323 MYLYLRKGETEEAMRLFEEMEDNSVITWNAMISGFAQIMDSAKDDLHARSRGFQALKIFR 382

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
           ++V+S ++PD   F ++L+ CS    +++G +            +  +   +V++  + G
Sbjct: 383 DLVRSAMKPDLFTFSSILSVCSTMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMYNKCG 442

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNMMGTYIIL 522
            ++ A +    MP +     W  ++    +H  P+  +     + +   KPN + T++ L
Sbjct: 443 CIEYATKAFVEMPTR-TLVTWTSMISGYSQHGRPHDAIQLFEDMILAGAKPNEI-TFVSL 500

Query: 523 SNIYAAEGKWEEFAKFRKIMR 543
            +  +  G  EE  ++  +M+
Sbjct: 501 LSACSYAGLVEEAMRYFDMMQ 521



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 128/274 (46%), Gaps = 2/274 (0%)

Query: 205 MLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264
           ML EG  +    +   +  C  TG +   K +H  ++K G   ++ V  S++++Y R   
Sbjct: 69  MLKEGQSVQSAMYVPLLHRCIETGSLGGAKALHGHMVKTGTIVDIFVATSLVNVYMRCGN 128

Query: 265 LSDANQYFDEMTEKDLITWNTIIAGYE-KSGSSECLNMFSKMKSERFSPNCFTFTSIIAA 323
             DA   FDEM EK+++TW  +I GY   S     L +F +M      P+ +T   +++A
Sbjct: 129 SQDARNLFDEMPEKNVVTWTALITGYTLNSQPVLALEVFVEMLKLGRYPSDYTLGGMLSA 188

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTW 383
           C     +  G+QVH   ++ G     ++ N+L  +Y K GN+    + F  + D++++TW
Sbjct: 189 CVASHNIDLGKQVHGYTIKYGAASITSIGNSLCRLYTKSGNLESGIRAFKRIPDKNVITW 248

Query: 384 TSMMIGYGAHGHGKE-AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN 442
           T+M+       +  E  + LF +M+K  V P+     +V++ C  +  ++ G +      
Sbjct: 249 TTMISACAEDENYTELGLNLFLDMLKGEVMPNEFTLTSVMSLCGTSLDMNLGKQVQGFCF 308

Query: 443 DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
                 N  +    + L  R G  +EA  L + M
Sbjct: 309 KIGCATNLPVKNSTMYLYLRKGETEEAMRLFEEM 342



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 102/210 (48%), Gaps = 4/210 (1%)

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           +  ++  C    +L   + +H  +V+ G   ++ +A +L+++Y +CGN  D++ +F EM 
Sbjct: 81  YVPLLHRCIETGSLGGAKALHGHMVKTGTIVDIFVATSLVNVYMRCGNSQDARNLFDEMP 140

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
           ++++VTWT+++ GY  +     A+E+F EM+K G  P       +L+AC  +  +D G +
Sbjct: 141 EKNVVTWTALITGYTLNSQPVLALEVFVEMLKLGRYPSDYTLGGMLSACVASHNIDLGKQ 200

Query: 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR 496
                  Y       I   +  L  ++G ++      K +P K +   W  ++ AC E  
Sbjct: 201 VHGYTIKYGAASITSIGNSLCRLYTKSGNLESGIRAFKRIPDK-NVITWTTMISACAEDE 259

Query: 497 LPNLGKLAALRVLD-LKPNMMGTYIILSNI 525
             N  +L     LD LK  +M     L+++
Sbjct: 260 --NYTELGLNLFLDMLKGEVMPNEFTLTSV 287


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/574 (36%), Positives = 327/574 (56%), Gaps = 16/574 (2%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNC--HNQAWTVFVEMV 104
            ++T L+  Y     + +A  +F  MP RD+V+W  M+AGY       H  A  + ++M 
Sbjct: 161 FVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQ 220

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAI----------KEGLEGSIYVENSLM 154
            + + PNA TL ++L       +L+    VH   I          K  L   + +  +L+
Sbjct: 221 MHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALL 280

Query: 155 DVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGV-EMN 213
           D+YA C  S+  AR VF+ M  +N+V+W+ LI G+           +FK ML +G+  ++
Sbjct: 281 DMYAKCG-SLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLS 339

Query: 214 PYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFD 273
           P S + A+RACAS   +  G+ +HA + K G  ++L   NS+L MY +   +  A   FD
Sbjct: 340 PTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFD 399

Query: 274 EMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSC 332
           EM  KD ++++ +++GY ++G + E   +F KM++    P+  T  S+I AC+ LAAL  
Sbjct: 400 EMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQH 459

Query: 333 GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA 392
           G+  H  ++ RGL    ++ NALIDMYAKCG I  S+++F+ M  RD+V+W +M+ GYG 
Sbjct: 460 GRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGI 519

Query: 393 HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKE 451
           HG GKEA  LF EM   G  PD + F+ +L+ACSH+GLV EG  +F  M + Y + P  E
Sbjct: 520 HGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRME 579

Query: 452 IYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDL 511
            Y C+VDLL R G + EAYE I+SMP + D  VW  LLGAC+ ++  +LGK  +  + +L
Sbjct: 580 HYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQEL 639

Query: 512 KPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKM 571
            P   G +++LSNIY+A G+++E A+ R I +  G KK  G SWIE+   +  F+  D+ 
Sbjct: 640 GPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQS 699

Query: 572 GSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDL 605
              +  +Y  L+ ++  + +  Y+PD   ++ DL
Sbjct: 700 HPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDL 733



 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 134/511 (26%), Positives = 242/511 (47%), Gaps = 31/511 (6%)

Query: 56  YFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQA--WTVFVEMVRNEVNPNAF 113
           +   G +  A  LFD++P  DV ++  +I  Y+S +    A    ++  M+R+ V PN +
Sbjct: 67  HIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNY 126

Query: 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFND 173
           T    LKAC  +        +H  AI  GL+  ++V  +L+D+Y  C    D A  +F  
Sbjct: 127 TFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAH-IFAT 185

Query: 174 MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA--VRACASTGWVS 231
           M  ++ V+W  ++ GYAH G  +  +     M ++   + P + ++   +   A  G ++
Sbjct: 186 MPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALA 245

Query: 232 FGKLIHAAVIKHGFGSN----------LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
            G  +HA  I+    SN          + +  ++LDMY +   L  A + FD M  ++ +
Sbjct: 246 QGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEV 305

Query: 282 TWNTIIAGYEK-SGSSECLNMFSKMKSERFSPNCF----TFTSIIAACATLAALSCGQQV 336
           TW+ +I G+   S  ++   +F  M ++     CF    +  S + ACA+L  L  G+Q+
Sbjct: 306 TWSALIGGFVLCSRMTQAFLLFKAMLAQGL---CFLSPTSIASALRACASLDHLRMGEQL 362

Query: 337 HAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHG 396
           HA + + G+  +L   N+L+ MYAK G I  +  +F EM+ +D V++++++ GY  +G  
Sbjct: 363 HALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRA 422

Query: 397 KEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCV 456
           +EA  +F +M    V PD    ++++ ACSH   +  G     S+    +     I   +
Sbjct: 423 EEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNAL 482

Query: 457 VDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLK---- 512
           +D+  + GR+  + ++   MP + D   W  ++     H    LGK A    L++     
Sbjct: 483 IDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIAGYGIH---GLGKEATALFLEMNNLGF 538

Query: 513 PNMMGTYIILSNIYAAEGKWEEFAKFRKIMR 543
           P    T+I L +  +  G   E   +  +MR
Sbjct: 539 PPDGVTFICLLSACSHSGLVIEGKHWFHVMR 569


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/536 (36%), Positives = 311/536 (58%), Gaps = 23/536 (4%)

Query: 63  EEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKAC 122
           E A  LFD++ +RDV+SW  MI+GY S     +   ++ +M+   ++ +  T+ SVL  C
Sbjct: 202 ESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGC 261

Query: 123 KGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSW 182
               +LS    VH +AIK   E  I   N+L+D+Y+ C   +D A  VF  M  +N VSW
Sbjct: 262 ANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCG-DLDGALRVFEKMGERNVVSW 320

Query: 183 TTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIK 242
           T++I GY   G   G + + ++M  EGV+++  + +  + ACA +G +  GK +H  +  
Sbjct: 321 TSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKA 380

Query: 243 HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMF 302
           +   SNL V N+++DMY +   +  AN  F  M  KD+I+WNT+I               
Sbjct: 381 NNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIG-------------- 426

Query: 303 SKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362
                    P+  T   I+ ACA+L+AL  G+++H  I+R G   +  +ANAL+D+Y KC
Sbjct: 427 ------ELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKC 480

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
           G +  ++ +F  +  +DLV+WT M+ GYG HG+G EAI  F+EM  +G+ PD + F+++L
Sbjct: 481 GVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISIL 540

Query: 423 TACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481
            ACSH+GL+++G ++F  M ND+N+ P  E Y C+VDLL R G + +AYE I+++P  PD
Sbjct: 541 YACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPD 600

Query: 482 ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKI 541
            ++WG LL  C+ +    L +  A RV +L+P   G Y++L+NIYA   KWEE  + R+ 
Sbjct: 601 ATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREK 660

Query: 542 MRGMGSKKEVGMSWIEVRDKVCGFIA-NDKMGSHTQYVYGVLEMLIRHMNETAYEP 596
           +   G +K  G SWIE++ KV  F++ N+    H++ +  +L+ + R M E  Y P
Sbjct: 661 IGKKGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFP 716



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 175/358 (48%), Gaps = 51/358 (14%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
            +  L+  Y   G ++ A  +F++M ER+VVSWT MIAGYT     + A  +  +M +  
Sbjct: 288 FSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEG 347

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V  +    +S+L AC    SL N   VH       +E +++V N+LMD+Y T C SMD A
Sbjct: 348 VKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMY-TKCGSMDGA 406

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA--VRACA 225
             VF+ M  K+ +SW T+I                        E+ P S ++A  + ACA
Sbjct: 407 NSVFSTMVVKDIISWNTMIG-----------------------ELKPDSRTMACILPACA 443

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           S   +  GK IH  ++++G+ S+  V N+++D+Y +   L  A   FD +  KDL++W  
Sbjct: 444 SLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTV 503

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I+GY   G  +E +  F++M+     P+  +F SI+ AC+           H+G++ +G
Sbjct: 504 MISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACS-----------HSGLLEQG 552

Query: 345 ------------LDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIG 389
                       ++  L     ++D+ ++ GN+S + +    +    D   W +++ G
Sbjct: 553 WRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCG 610



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 157/358 (43%), Gaps = 67/358 (18%)

Query: 211 EMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQ 270
           E+   ++S  ++ CA +  ++ GK +H+ +  +    +  +   ++ +Y     L +  +
Sbjct: 96  ELETKTYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRR 155

Query: 271 YFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKM------------KSERFSPNC--- 314
            FD M +K++  WN +++ Y K G   E + +F  M             SE F   C   
Sbjct: 156 VFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRD 215

Query: 315 ------------------------------------FTFTSIIAACATLAALSCGQQVHA 338
                                                T  S++  CA    LS G+ VH+
Sbjct: 216 VISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHS 275

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
             ++   +  +  +N L+DMY+KCG++  + ++F +M +R++V+WTSM+ GY   G    
Sbjct: 276 LAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDG 335

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDY----NVNPNKEIYG 454
           AI L  +M K GV+ D +   ++L AC+ +G +D G    K ++DY    N+  N  +  
Sbjct: 336 AIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNG----KDVHDYIKANNMESNLFVCN 391

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR------LPNLGKLAAL 506
            ++D+  + G +  A  +  +M  K D   W  ++G  K         LP    L+AL
Sbjct: 392 ALMDMYTKCGSMDGANSVFSTMVVK-DIISWNTMIGELKPDSRTMACILPACASLSAL 448


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/573 (36%), Positives = 327/573 (57%), Gaps = 16/573 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNC--HNQAWTVFVEMVR 105
           ++T L+  Y     + +A  +F  MP RD+V+W  M+AGY       H  A  + ++M  
Sbjct: 47  VSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQM 106

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAI----------KEGLEGSIYVENSLMD 155
           + + PNA TL ++L       +L+    VH   I          K  L   + +  +L+D
Sbjct: 107 HRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLD 166

Query: 156 VYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGV-EMNP 214
           +YA C  S+  AR VF+ M  +N+V+W+ LI G+           +FK ML +G+  ++P
Sbjct: 167 MYAKCG-SLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSP 225

Query: 215 YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE 274
            S + A+RACAS   +  G+ +HA + K G  ++L   NS+L MY +   +  A   FDE
Sbjct: 226 TSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDE 285

Query: 275 MTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG 333
           M  KD ++++ +++GY ++G + E   +F KM++    P+  T  S+I AC+ LAAL  G
Sbjct: 286 MAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHG 345

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
           +  H  ++ RGL    ++ NALIDMYAKCG I  S+++F+ M  RD+V+W +M+ GYG H
Sbjct: 346 RCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIH 405

Query: 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEI 452
           G GKEA  LF EM   G  PD + F+ +L+ACSH+GLV EG  +F  M + Y + P  E 
Sbjct: 406 GLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEH 465

Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLK 512
           Y C+VDLL R G + EAYE I+SMP + D  VW  LLGAC+ ++  +LGK  +  + +L 
Sbjct: 466 YICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELG 525

Query: 513 PNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMG 572
           P   G +++LSNIY+A G+++E A+ R I +  G KK  G SWIE+   +  F+  D+  
Sbjct: 526 PEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSH 585

Query: 573 SHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDL 605
             +  +Y  L+ ++  + +  Y+PD   ++ DL
Sbjct: 586 PQSPEIYRELDNILVGIKKLGYQPDTSFVLQDL 618



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 113/426 (26%), Positives = 205/426 (48%), Gaps = 25/426 (5%)

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M+R+ V PN +T    LKAC  +        +H  AI  GL+  ++V  +L+D+Y  C  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA-- 220
             D A  +F  M  ++ V+W  ++ GYAH G  +  +     M ++   + P + ++   
Sbjct: 61  LPDAAH-IFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVAL 119

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSN----------LPVMNSILDMYCRFDCLSDANQ 270
           +   A  G ++ G  +HA  I+     N          + +  ++LDMY +   L  A +
Sbjct: 120 LPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARR 179

Query: 271 YFDEMTEKDLITWNTIIAGYEK-SGSSECLNMFSKMKSERFSPNCF----TFTSIIAACA 325
            FD M  ++ +TW+ +I G+   S  ++   +F  M ++     CF    +  S + ACA
Sbjct: 180 VFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGL---CFLSPTSIASALRACA 236

Query: 326 TLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTS 385
           +L  L  G+Q+HA + + G+  +L   N+L+ MYAK G I  +  +F EM+ +D V++++
Sbjct: 237 SLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSA 296

Query: 386 MMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYN 445
           ++ GY  +G  +EA  +F +M    V PD    ++++ ACSH   +  G     S+    
Sbjct: 297 LVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRG 356

Query: 446 VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAA 505
           +     I   ++D+  + GR+  + ++   MP + D   W  ++     H    LGK A 
Sbjct: 357 LASETSICNALIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIAGYGIH---GLGKEAT 412

Query: 506 LRVLDL 511
              L++
Sbjct: 413 ALFLEM 418



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 116/461 (25%), Positives = 217/461 (47%), Gaps = 31/461 (6%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +L T L+  Y   G +  AR +FD MP R+ V+W+ +I G+   +   QA+ +F  M+  
Sbjct: 159 LLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQ 218

Query: 107 E---VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
               ++P   +++S L+AC  +  L     +H +  K G+   +   NSL+ +YA   + 
Sbjct: 219 GLCFLSPT--SIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGL- 275

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +D A  +F++M  K+ VS++ L++GY  +G       VFK+M    VE +  +    + A
Sbjct: 276 IDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPA 335

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C+    +  G+  H +VI  G  S   + N+++DMY +   +  + Q F+ M  +D+++W
Sbjct: 336 CSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSW 395

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ-VHAGIV 341
           NT+IAGY   G   E   +F +M +  F P+  TF  +++AC+    +  G+   H    
Sbjct: 396 NTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGH 455

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIG---YGAHGHGK 397
             GL   +     ++D+ ++ G + ++ +    M  R D+  W +++     Y     GK
Sbjct: 456 GYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGK 515

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG--LKYFKSMNDYNVNPN---KEI 452
           +   +  E+   G       F+ +    S AG  DE   ++  + +  +  +P     EI
Sbjct: 516 KVSRMIQELGPEGTGN----FVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEI 571

Query: 453 YGCVVDLLGRAGRVKEAYEL----------IKSMPFKPDES 483
            G +   +G      ++ E+          IK + ++PD S
Sbjct: 572 NGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTS 612


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/562 (36%), Positives = 329/562 (58%), Gaps = 5/562 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + + L++ Y   G + EA  +F+E    D V WT M+ GY   N   +A  +F +MV  
Sbjct: 140 FVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMM 199

Query: 107 E-VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           + V  +  TL SV+ AC  + ++   + VHG+ I+   +G + + NSL+++YA       
Sbjct: 200 DCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKI 259

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A L F+ M  K+ +SW+T+I  YA++      L +F EM+ +  E N  +   A++ACA
Sbjct: 260 AANL-FSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACA 318

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
            +  +  GK IH   +  GF  +  V  +++DMY +  C  +A   F  + +KD+++W  
Sbjct: 319 VSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVA 378

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +++GY ++G + + + +F  M S+   P+      I+AA + L        +H  +VR G
Sbjct: 379 LLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSG 438

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
            + N+ +  +LI++Y+KCG++ D+ K+F  M  RD+V W+SM+  YG HG G EA+E+FD
Sbjct: 439 FNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFD 498

Query: 405 EMVK-SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGR 462
           +MVK S VRP+ + F+++L+ACSHAGLV+EGLK F  M +DY + P+ E +G +VDLLGR
Sbjct: 499 QMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGR 558

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
            G++ +A ++I  MP      VWG LLGAC+ H    +G+ AA  +  L P+  G YI+L
Sbjct: 559 IGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYILL 618

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           SNIYA +GKW+  A+ R  ++  G KK  G S +EVR  V  F+A+D+    +Q +Y +L
Sbjct: 619 SNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEVRGGVHSFLASDRFHPDSQKIYELL 678

Query: 583 EMLIRHMNETAYEPDIDCLIHD 604
             L   M +  Y PD+D L+HD
Sbjct: 679 RKLEAQMGKEVYIPDLDFLLHD 700



 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 169/448 (37%), Positives = 273/448 (60%), Gaps = 2/448 (0%)

Query: 164  MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
            +D A +VF D+       W  +I G+A  G     L ++ +M+ +G++ + ++F  A+++
Sbjct: 768  IDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKS 827

Query: 224  CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
            CA    +  GK+IH  ++  G  ++L V  +++DMY +   +  A   FD+M  +DL++W
Sbjct: 828  CAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSW 887

Query: 284  NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
             ++I+GY  +G +SE L  F  M+S    PN  +  S++ AC  L AL  G+  H+ +++
Sbjct: 888  TSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQ 947

Query: 343  RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
             G + ++ +A A++DMY+KCG++  ++ +F E + +DLV W++M+  YG HGHG++AI+L
Sbjct: 948  TGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDL 1007

Query: 403  FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK-EIYGCVVDLLG 461
            FD+MVK+GVRP  + F  VL+ACSH+GL++EG  YF+ M +  V   K   Y C+VDLLG
Sbjct: 1008 FDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLG 1067

Query: 462  RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
            RAG++ EA +LI++MP +PD S+WG LLGAC+ H   +L +  A  +  L P   G +++
Sbjct: 1068 RAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVL 1127

Query: 522  LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGV 581
            LSNIYAA+ +W E  K RK+M   G+ K  G S +E  ++V  F   D+     + +Y  
Sbjct: 1128 LSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAK 1187

Query: 582  LEMLIRHMNETAYEPDIDCLIHDLEGET 609
            LE L   M    Y P  D ++HD+E E 
Sbjct: 1188 LEELAAPMKHLGYVPLTDFVLHDIEEEA 1215



 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 134/458 (29%), Positives = 240/458 (52%), Gaps = 14/458 (3%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           +  AT L   Y     ++ AR +FDE P  +V  W   +  Y    C  + W   + +  
Sbjct: 36  TFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSY----CREKQWEETLRLFH 91

Query: 106 NEV-----NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGS-IYVENSLMDVYAT 159
             +      P+ FT+   LKAC G++ L    ++HG A K    GS ++V ++L+++Y+ 
Sbjct: 92  LMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSK 151

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEM-LLEGVEMNPYSFS 218
           C   M  A  VF + +  + V WT+++TGY  + +    L +F +M +++ V ++P +  
Sbjct: 152 CG-QMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLV 210

Query: 219 IAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK 278
             V ACA    V  G  +H  VI+  F  +LP++NS+L++Y +  C   A   F +M EK
Sbjct: 211 SVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEK 270

Query: 279 DLITWNTIIAGYEKS-GSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
           D+I+W+T+IA Y  +  ++E LN+F +M  +RF PN  T  S + ACA    L  G+++H
Sbjct: 271 DVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIH 330

Query: 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
              V +G + + +++ ALIDMY KC    ++  +F  +  +D+V+W +++ GY  +G   
Sbjct: 331 KIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAY 390

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVV 457
           +++ +F  M+  G++PD +  + +L A S  G+  + L     +     N N  +   ++
Sbjct: 391 KSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLI 450

Query: 458 DLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           +L  + G + +A +L K M  + D  +W  ++ A   H
Sbjct: 451 ELYSKCGSLGDAVKLFKGMIVR-DVVIWSSMIAAYGIH 487



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 109/386 (28%), Positives = 182/386 (47%), Gaps = 45/386 (11%)

Query: 46   SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
            S + T     Y     I+ A  +F+++P      W VMI G+ +      +  ++ +M+ 
Sbjct: 752  SRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMME 811

Query: 106  NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
              + P+ F     LK+C G+  L    ++H   +  G    ++V+ +L+D+YA C   ++
Sbjct: 812  KGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCG-DIE 870

Query: 166  NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
             ARLVF+ M  ++ VSWT++I+GYAH+G     LG F  M   GV  N  S    + AC 
Sbjct: 871  AARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACG 930

Query: 226  STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
            + G +  G+  H+ VI+ GF  ++ V  +I+DMY +   L  A   FDE   KDL+ W+ 
Sbjct: 931  NLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSA 990

Query: 286  IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
            +IA Y   G   + +++F +M      P+  TFT +++AC+           H+G++  G
Sbjct: 991  MIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACS-----------HSGLLEEG 1039

Query: 345  LDGNLALANALIDMYAKCGNISDSQKIFSEMSD-----RDLVTWTSMMIGYGAHGHGKEA 399
                         MY            F  M++     R L  +  M+   G  G   EA
Sbjct: 1040 ------------KMY------------FQLMTEEFVIARKLSNYACMVDLLGRAGQLSEA 1075

Query: 400  IELFDEMVKSGVRPDRIVFMAVLTAC 425
            ++L + M    V PD  ++ ++L AC
Sbjct: 1076 VDLIENM---PVEPDASIWGSLLGAC 1098



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 116/208 (55%), Gaps = 2/208 (0%)

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
           K  HA +  +G   +  ++     MY  F+ +  A+  F+++       WN +I G+   
Sbjct: 737 KKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATD 796

Query: 294 GSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
           G     L ++SKM  +   P+ F F   + +CA L+ L  G+ +H  +V  G   +L + 
Sbjct: 797 GRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVD 856

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
            AL+DMYAKCG+I  ++ +F +M+ RDLV+WTSM+ GY  +G+  E +  FD M  SGV 
Sbjct: 857 AALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVI 916

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKS 440
           P+R+  ++VL AC + G + +G ++F S
Sbjct: 917 PNRVSILSVLLACGNLGALRKG-EWFHS 943



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 125/262 (47%), Gaps = 8/262 (3%)

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS 295
           +H+ V K G   +      +  +Y +   L  A + FDE    ++  WN+ +  Y +   
Sbjct: 23  LHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQ 82

Query: 296 -SECLNMFSKMK-SERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG--LDGNLAL 351
             E L +F  M  +   +P+ FT    + ACA L  L  G+ +H G  ++   +  ++ +
Sbjct: 83  WEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIH-GFAKKNDEIGSDMFV 141

Query: 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV-KSG 410
            +AL+++Y+KCG + ++ K+F E    D V WTSM+ GY  +   +EA+ LF +MV    
Sbjct: 142 GSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDC 201

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470
           V  D +  ++V++AC+    V  G      +     + +  +   +++L  + G  K A 
Sbjct: 202 VVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAA 261

Query: 471 ELIKSMPFKPDESVWGPLLGAC 492
            L   MP K D   W  ++ AC
Sbjct: 262 NLFSKMPEK-DVISWSTMI-AC 281



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 80/167 (47%), Gaps = 5/167 (2%)

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
           Q+H+ + + G+  +   A  L  +YAKC ++  ++K+F E    ++  W S +  Y    
Sbjct: 22  QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREK 81

Query: 395 HGKEAIELFDEMV-KSGVRPDRIVFMAVLTACSHAGLVDEG--LKYFKSMNDYNVNPNKE 451
             +E + LF  M+  +G  PD       L AC+   +++ G  +  F   ND  +  +  
Sbjct: 82  QWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKND-EIGSDMF 140

Query: 452 IYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLP 498
           +   +V+L  + G++ EA ++ +    +PD  +W  ++   +++  P
Sbjct: 141 VGSALVELYSKCGQMGEALKVFEEFQ-RPDTVLWTSMVTGYQQNNDP 186



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 90/203 (44%), Gaps = 11/203 (5%)

Query: 326 TLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTS 385
           T++  SC ++ HA I   GL  +  +      MY     I  +  +F ++ +     W  
Sbjct: 729 TISCFSCLKKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNV 788

Query: 386 MMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYN 445
           M+ G+   G    ++EL+ +M++ G++PD+  F   L +C  AGL D  L+  K ++ + 
Sbjct: 789 MIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSC--AGLSD--LQRGKVIHQHL 844

Query: 446 V----NPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG--ACKEHRLPN 499
           V    + +  +   +VD+  + G ++ A  +   M  + D   W  ++   A   +    
Sbjct: 845 VCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVR-DLVSWTSMISGYAHNGYNSET 903

Query: 500 LGKLAALRVLDLKPNMMGTYIIL 522
           LG    +R   + PN +    +L
Sbjct: 904 LGFFDLMRSSGVIPNRVSILSVL 926


>gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa]
 gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa]
          Length = 680

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/521 (38%), Positives = 314/521 (60%), Gaps = 3/521 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+  Y   G ++++R +FDE+ ER+ VSW  +I        +  A  +F  M+   V PN
Sbjct: 150 LVDVYGKCGYVKDSRRVFDEISERNGVSWNAIITSLAYLERNQDALEMFRLMIDGGVKPN 209

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
           + T SS+L     +K       +HG +++ GLE  I+V N+L+D+YA    S+  A  VF
Sbjct: 210 SVTFSSMLPVLVELKLFDFGKEIHGFSLRFGLESDIFVANALIDMYAKSGRSL-QASNVF 268

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           N +  KN VSW  ++  +A +      + + ++M  +G   N  +F+  + ACA  G++ 
Sbjct: 269 NQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARIGFLR 328

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            GK IHA  I+ G   +L V N++ DMY +  CL+ A + F +++ +D +++N +I GY 
Sbjct: 329 PGKEIHARAIRTGSSVDLFVSNALTDMYAKCGCLNLARRVF-KISLRDEVSYNILIIGYS 387

Query: 292 KSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           ++ + SE L +F +M  +    +  ++  +I+ACA LAAL  G++VH   VR+ L  +L 
Sbjct: 388 QTTNCSESLRLFLEMGIKGMKLDVVSYMGVISACANLAALKQGKEVHGLAVRKHLHTHLF 447

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           +ANAL+D Y KCG I  + K+F ++  RD  +W SM++GYG  G    AI LF+ M + G
Sbjct: 448 IANALLDFYIKCGRIDLAGKVFRQIPSRDTASWNSMILGYGMLGELTIAINLFEAMKEDG 507

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470
           V  D + ++AVL+ACSH GLV+EG KYF+ M   N+ P +  Y C+VDLLGRAG ++EA 
Sbjct: 508 VEYDSVSYIAVLSACSHGGLVEEGKKYFEHMQVQNIKPTQMHYACMVDLLGRAGLIEEAV 567

Query: 471 ELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEG 530
           +LI+S+P +PD +VWG LLGAC+ H    L   AA  +  LKP   G Y +LSN+YA  G
Sbjct: 568 KLIESLPIEPDANVWGALLGACRIHGYIELAHWAAEHLFKLKPQHSGYYSVLSNMYAEAG 627

Query: 531 KWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKM 571
           KW+E  + RK+M+  G+KK  G SW+++ ++V  F+A ++M
Sbjct: 628 KWDEANQVRKLMKSRGAKKNPGCSWVQIDNQVHAFVAGERM 668



 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 130/444 (29%), Positives = 250/444 (56%), Gaps = 5/444 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM-VRN 106
           +   L+  Y + G +++ + +FDEM ERDVVSW  +I  ++    + +A  +F EM +R+
Sbjct: 44  VGNTLLLFYGNCGGLKDVKRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRS 103

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
              PN  ++ SVL  C G++       +H   +K GL+  + V N+L+DVY  C    D+
Sbjct: 104 GFRPNMVSIVSVLPVCAGLEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDS 163

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
            R VF+++  +N VSW  +IT  A+       L +F+ M+  GV+ N  +FS  +     
Sbjct: 164 RR-VFDEISERNGVSWNAIITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVE 222

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
                FGK IH   ++ G  S++ V N+++DMY +      A+  F+++ EK++++WN +
Sbjct: 223 LKLFDFGKEIHGFSLRFGLESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAM 282

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           +A + ++      +++  +M+++   PN  TFT+++ ACA +  L  G+++HA  +R G 
Sbjct: 283 VANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARIGFLRPGKEIHARAIRTGS 342

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             +L ++NAL DMYAKCG ++ ++++F ++S RD V++  ++IGY    +  E++ LF E
Sbjct: 343 SVDLFVSNALTDMYAKCGCLNLARRVF-KISLRDEVSYNILIIGYSQTTNCSESLRLFLE 401

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M   G++ D + +M V++AC++   + +G +        +++ +  I   ++D   + GR
Sbjct: 402 MGIKGMKLDVVSYMGVISACANLAALKQGKEVHGLAVRKHLHTHLFIANALLDFYIKCGR 461

Query: 466 VKEAYELIKSMPFKPDESVWGPLL 489
           +  A ++ + +P + D + W  ++
Sbjct: 462 IDLAGKVFRQIPSR-DTASWNSMI 484



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 168/323 (52%), Gaps = 3/323 (0%)

Query: 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFND 173
           T   VLKAC    S+     +HG+  K G +  ++V N+L+  Y  C   + + + VF++
Sbjct: 9   TFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCG-GLKDVKRVFDE 67

Query: 174 MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEM-LLEGVEMNPYSFSIAVRACASTGWVSF 232
           M  ++ VSW ++I  ++  G     + +F EM L  G   N  S    +  CA       
Sbjct: 68  MLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAGLEDGVT 127

Query: 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEK 292
           G+ IH  V+K G  S + V N+++D+Y +   + D+ + FDE++E++ ++WN II     
Sbjct: 128 GRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNAIITSLAY 187

Query: 293 -SGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLAL 351
              + + L MF  M      PN  TF+S++     L     G+++H   +R GL+ ++ +
Sbjct: 188 LERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFGLESDIFV 247

Query: 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411
           ANALIDMYAK G    +  +F+++ ++++V+W +M+  +  +     A++L  +M   G 
Sbjct: 248 ANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQMQADGE 307

Query: 412 RPDRIVFMAVLTACSHAGLVDEG 434
            P+ + F  VL AC+  G +  G
Sbjct: 308 IPNSVTFTNVLPACARIGFLRPG 330



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 159/291 (54%), Gaps = 3/291 (1%)

Query: 209 GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDA 268
           GV ++ ++F   ++ACA +  V  G+ IH  V K GF S++ V N++L  Y     L D 
Sbjct: 2   GVRLDDHTFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDV 61

Query: 269 NQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSER-FSPNCFTFTSIIAACAT 326
            + FDEM E+D+++WN++I  +   G  +E +++F +M     F PN  +  S++  CA 
Sbjct: 62  KRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAG 121

Query: 327 LAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSM 386
           L     G+Q+H  +V+ GLD  + + NAL+D+Y KCG + DS+++F E+S+R+ V+W ++
Sbjct: 122 LEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNAI 181

Query: 387 MIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV 446
           +         ++A+E+F  M+  GV+P+ + F ++L       L D G +       + +
Sbjct: 182 ITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFGL 241

Query: 447 NPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
             +  +   ++D+  ++GR  +A  +   +  K   S W  ++    ++RL
Sbjct: 242 ESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVS-WNAMVANFAQNRL 291



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 109/436 (25%), Positives = 213/436 (48%), Gaps = 50/436 (11%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A  LI  Y   G   +A  +F+++ E+++VSW  M+A +        A  +  +M  + 
Sbjct: 247 VANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQMQADG 306

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDN 166
             PN+ T ++VL AC  +  L     +H  AI+ G    ++V N+L D+YA C C+++  
Sbjct: 307 EIPNSVTFTNVLPACARIGFLRPGKEIHARAIRTGSSVDLFVSNALTDMYAKCGCLNL-- 364

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR VF  +  +++VS+  LI GY+ + N    L +F EM ++G++++  S+   + ACA+
Sbjct: 365 ARRVFK-ISLRDEVSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVSYMGVISACAN 423

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  GK +H   ++    ++L + N++LD Y +   +  A + F ++  +D  +WN++
Sbjct: 424 LAALKQGKEVHGLAVRKHLHTHLFIANALLDFYIKCGRIDLAGKVFRQIPSRDTASWNSM 483

Query: 287 IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I GY   G  +  +N+F  MK +    +  ++ ++++AC+           H G+V  G 
Sbjct: 484 ILGYGMLGELTIAINLFEAMKEDGVEYDSVSYIAVLSACS-----------HGGLVEEG- 531

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDL----VTWTSMMIGYGAHGHGKEAIE 401
                                  +K F  M  +++    + +  M+   G  G  +EA++
Sbjct: 532 -----------------------KKYFEHMQVQNIKPTQMHYACMVDLLGRAGLIEEAVK 568

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVV-DLL 460
           L + +    + PD  V+ A+L AC   G ++  L ++ + + + + P    Y  V+ ++ 
Sbjct: 569 LIESL---PIEPDANVWGALLGACRIHGYIE--LAHWAAEHLFKLKPQHSGYYSVLSNMY 623

Query: 461 GRAGRVKEAYELIKSM 476
             AG+  EA ++ K M
Sbjct: 624 AEAGKWDEANQVRKLM 639


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/581 (35%), Positives = 319/581 (54%), Gaps = 10/581 (1%)

Query: 8   SYAATFH-CHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEAR 66
           SY   F  C KI  +    L   +      +PP        L  +++K Y   G + +AR
Sbjct: 12  SYKCLFEACGKIKSLFDGRLFHEQMQRTVKNPP------EFLENSVLKMYCKCGSLADAR 65

Query: 67  TLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMK 126
            +FDEM ER++VSW  +I+ Y      ++ + +F  M+  E  PN  T    L++     
Sbjct: 66  KVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLNPS 125

Query: 127 SLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLI 186
            L     +H  AI+ GL  +  V  ++ ++Y  C   ++ A LVF  M  KN V+WT ++
Sbjct: 126 GLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGW-LEGAELVFEKMSEKNAVAWTGIM 184

Query: 187 TGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFG 246
            GY  +      L +F +M+ EGVE++ Y FSI ++ACA    ++FG+ IH  ++K G  
Sbjct: 185 VGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLE 244

Query: 247 SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKM 305
           S + V   ++D Y +   L  A + F+ ++E + ++W+ +I GY + G   E L  F  +
Sbjct: 245 SEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESL 304

Query: 306 KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNI 365
           ++     N FT+TSI  AC+ LA  + G Q HA  ++  L       +A+I MY++CG +
Sbjct: 305 RTRSVDINSFTYTSIFQACSALADFNSGAQAHADAIKSSLVAYQHGESAMITMYSRCGRL 364

Query: 366 SDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTAC 425
             + ++F  + D D V WT+++ GY   G+  EA++LF  M   GVRP+ + F+AVLTAC
Sbjct: 365 DYATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQDCGVRPNAVTFIAVLTAC 424

Query: 426 SHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESV 484
           SH+GLV EG +Y +SM ++Y V    + Y C+VD+  RAG ++EA ELI+SMPF PD   
Sbjct: 425 SHSGLVIEGRQYLESMSSNYGVATTIDHYDCMVDIYSRAGFLQEALELIRSMPFSPDAMS 484

Query: 485 WGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544
           W  LLG C  +R   +G+LAA  +  L P     YI++ N+YA+ GKW+E A  RK+M  
Sbjct: 485 WKCLLGGCWTYRNLEIGELAAENLFQLDPEDTAGYILMFNLYASFGKWKEAANVRKMMAE 544

Query: 545 MGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
              +KE+  SWI V+ KV  FI  DK    T+ +Y  LE L
Sbjct: 545 RNLRKELSCSWITVKGKVHRFIVGDKHHPQTEEIYSKLEAL 585



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 153/291 (52%), Gaps = 11/291 (3%)

Query: 209 GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDA 268
           G+ ++P S+     AC     +  G+L H  + +        + NS+L MYC+   L+DA
Sbjct: 5   GISVSPRSYKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGSLADA 64

Query: 269 NQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATL 327
            + FDEM E++L++WNTII+ Y ++G   +   MFS M      PN  T+   + +    
Sbjct: 65  RKVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLNP 124

Query: 328 AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMM 387
           + L  G+Q+H+  +R GL  N ++  A+ +MY KCG +  ++ +F +MS+++ V WT +M
Sbjct: 125 SGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGIM 184

Query: 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN 447
           +GY       +A+ LF +MV  GV  D  VF  VL AC  AGL  E L + + ++ + V 
Sbjct: 185 VGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKAC--AGL--EELNFGRQIHGHIVK 240

Query: 448 PNKE----IYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL-GACK 493
              E    +   +VD   +   ++ A +  + +  +P++  W  L+ G C+
Sbjct: 241 LGLESEVSVGTPLVDFYVKCSNLESATKAFEWIS-EPNDVSWSALITGYCQ 290


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/536 (36%), Positives = 311/536 (58%), Gaps = 23/536 (4%)

Query: 63  EEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKAC 122
           E A  LFD++ +RDV+SW  MI+GY S     +   ++ +M+   ++ +  T+ SVL  C
Sbjct: 202 ESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGC 261

Query: 123 KGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSW 182
               +LS    VH +AIK   E  I   N+L+D+Y+ C   +D A  VF  M  +N VSW
Sbjct: 262 ANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCG-DLDGALRVFEKMGERNVVSW 320

Query: 183 TTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIK 242
           T++I GY   G   G + + ++M  EGV+++  + +  + ACA +G +  GK +H  +  
Sbjct: 321 TSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKA 380

Query: 243 HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMF 302
           +   SNL V N+++DMY +   +  AN  F  M  KD+I+WNT+I               
Sbjct: 381 NNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIG-------------- 426

Query: 303 SKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362
                    P+  T   ++ ACA+L+AL  G+++H  I+R G   +  +ANAL+D+Y KC
Sbjct: 427 ------ELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKC 480

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
           G +  ++ +F  +  +DLV+WT M+ GYG HG+G EAI  F+EM  +G+ PD + F+++L
Sbjct: 481 GVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISIL 540

Query: 423 TACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481
            ACSH+GL+++G ++F  M ND+N+ P  E Y C+VDLL R G + +AYE I+++P  PD
Sbjct: 541 YACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPD 600

Query: 482 ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKI 541
            ++WG LL  C+ +    L +  A RV +L+P   G Y++L+NIYA   KWEE  + R+ 
Sbjct: 601 ATIWGALLCGCRNYHDIELAEKVAERVFELEPENSGYYVLLANIYAEAEKWEEVKRLREK 660

Query: 542 MRGMGSKKEVGMSWIEVRDKVCGFIA-NDKMGSHTQYVYGVLEMLIRHMNETAYEP 596
           +   G +K  G SWIE++ KV  F++ N+    H++ +  +L+ + R M E  + P
Sbjct: 661 IGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFP 716



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 176/358 (49%), Gaps = 51/358 (14%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
            +  L+  Y   G ++ A  +F++M ER+VVSWT MIAGYT     + A  +  +M +  
Sbjct: 288 FSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEG 347

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V  +   ++S+L AC    SL N   VH       +E +++V N+LMD+YA C  SM+ A
Sbjct: 348 VKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCG-SMEAA 406

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA--VRACA 225
             VF+ M  K+ +SW T+I                        E+ P S ++A  + ACA
Sbjct: 407 NSVFSTMVVKDIISWNTMIG-----------------------ELKPDSRTMACVLPACA 443

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           S   +  GK IH  ++++G+ S+  V N+++D+Y +   L  A   FD +  KDL++W  
Sbjct: 444 SLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTV 503

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +IAGY   G  +E +  F++M+     P+  +F SI+ AC+           H+G++ +G
Sbjct: 504 MIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACS-----------HSGLLEQG 552

Query: 345 ------------LDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIG 389
                       ++  L     ++D+ ++ GN+S + +    +    D   W +++ G
Sbjct: 553 WRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCG 610



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 159/358 (44%), Gaps = 67/358 (18%)

Query: 211 EMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQ 270
           E+   ++S  ++ CA     + GK +H+ +  +  G +  +   ++  Y     L +  +
Sbjct: 96  ELETKTYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRR 155

Query: 271 YFDEMTEKDLITWNTIIAGYEKSG---SSECL------------------NMFSKM---- 305
            FD M +K++  WN +++ Y K G    S CL                   +F K+    
Sbjct: 156 VFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRD 215

Query: 306 ---------------KSER------------FSPNCFTFTSIIAACATLAALSCGQQVHA 338
                           +ER               +  T  S++  CA    LS G+ VH+
Sbjct: 216 VISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHS 275

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
             ++   +  +  +N L+DMY+KCG++  + ++F +M +R++V+WTSM+ GY   G    
Sbjct: 276 LAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDG 335

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDY----NVNPNKEIYG 454
           AI+L  +M K GV+ D +   ++L AC+ +G +D G    K ++DY    N+  N  +  
Sbjct: 336 AIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNG----KDVHDYIKANNMESNLFVCN 391

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR------LPNLGKLAAL 506
            ++D+  + G ++ A  +  +M  K D   W  ++G  K         LP    L+AL
Sbjct: 392 ALMDMYAKCGSMEAANSVFSTMVVK-DIISWNTMIGELKPDSRTMACVLPACASLSAL 448


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/564 (34%), Positives = 318/564 (56%), Gaps = 3/564 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I+  +L+  Y   G +E A  +F+     +VV W +M+  +   N   +++ +F +M   
Sbjct: 280 IMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAA 339

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + PN FT   +L+ C   + +     +H +++K G E  +YV   L+D+Y+     ++ 
Sbjct: 340 GIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGW-LEK 398

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR V   +K K+ VSWT++I GY         L  FKEM   G+  +    + A+  CA 
Sbjct: 399 ARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAG 458

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  G  IHA +   G+  ++ + N+++++Y R   + +A   F+EM  KD IT N +
Sbjct: 459 INAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGL 518

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           ++G+ +SG   E L +F +M       N FTF S ++A A LA +  G+Q+HA +++ G 
Sbjct: 519 VSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGH 578

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
                + NALI +Y KCG+  D++  FSEMS+R+ V+W +++     HG G EA++LFD+
Sbjct: 579 SFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQ 638

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAG 464
           M K G++P+ + F+ VL ACSH GLV+EGL YFKSM+D Y + P  + Y CV+D+ GRAG
Sbjct: 639 MKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAG 698

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           ++  A + I+ MP   D  VW  LL ACK H+   +G+ AA  +L+L+P+   +Y++LSN
Sbjct: 699 QLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSN 758

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
            YA   KW    + RK+MR  G +KE G SWIEV++ V  F   D++    + +Y  L +
Sbjct: 759 AYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYNFLAV 818

Query: 585 LIRHMNETAYEPDIDCLIHDLEGE 608
           +   + +  Y+ +   L HD E E
Sbjct: 819 INDRVAKVGYKQEKYHLFHDKEQE 842



 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 128/434 (29%), Positives = 230/434 (52%), Gaps = 2/434 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I+   LI  Y   GL+  AR +F+E+  RD VSW  M++GY       +A  ++ +M R 
Sbjct: 78  IVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRA 137

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V P  + LSSVL +C   +  +   L+H    K G    I+V N+++ +Y  C  S   
Sbjct: 138 GVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCG-SFRL 196

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  VF DM  ++ V++ TLI+G+A  G+G   L +F+EM   G+  +  + S  + ACAS
Sbjct: 197 AERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACAS 256

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G +  G  +H+ + K G  S+  +  S+LD+Y +   +  A   F+     +++ WN +
Sbjct: 257 LGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLM 316

Query: 287 IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           +  + +    ++   +F +M++    PN FT+  I+  C     +  G+Q+H+  V+ G 
Sbjct: 317 LVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGF 376

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           + ++ ++  LIDMY+K G +  ++++   + ++D+V+WTSM+ GY  H   K+A+  F E
Sbjct: 377 ESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKE 436

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M K G+ PD I   + ++ C+    + +GL+    +     + +  I+  +V+L  R GR
Sbjct: 437 MQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGR 496

Query: 466 VKEAYELIKSMPFK 479
           ++EA+   + M  K
Sbjct: 497 IREAFSSFEEMELK 510



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 115/426 (26%), Positives = 219/426 (51%), Gaps = 4/426 (0%)

Query: 72  MPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGM-KSLSN 130
           M  R   S    +AG+ +     +  ++F +  R          +  L+AC+G  +    
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGPLDFACALRACRGNGRRWQV 60

Query: 131 AALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYA 190
              +H  A+  GL     V N L+D+Y+   + +  AR VF ++  +++VSW  +++GYA
Sbjct: 61  VPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLP-ARRVFEELSARDNVSWVAMLSGYA 119

Query: 191 HSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLP 250
            +G G   LG++++M   GV   PY  S  + +C      + G+LIHA   KHGF S + 
Sbjct: 120 QNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIF 179

Query: 251 VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSER 309
           V N+++ +Y R      A + F +M  +D +T+NT+I+G+ + G  E  L +F +M+   
Sbjct: 180 VGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSG 239

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
            SP+C T +S++AACA+L  L  G Q+H+ + + G+  +  +  +L+D+Y KCG++  + 
Sbjct: 240 LSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETAL 299

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
            IF+     ++V W  M++ +G      ++ ELF +M  +G+RP++  +  +L  C+   
Sbjct: 300 VIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTR 359

Query: 430 LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
            +D G +            +  + G ++D+  + G +++A  +++ +  K D   W  ++
Sbjct: 360 EIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEK-DVVSWTSMI 418

Query: 490 GACKEH 495
               +H
Sbjct: 419 AGYVQH 424


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/565 (35%), Positives = 339/565 (60%), Gaps = 3/565 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + + T LI +Y   G ++ AR +FD++  +D+VSWT M+A Y     + ++  +F +M  
Sbjct: 171 AFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRI 230

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
               PN FT+S  LK+C G+++ +    VHG A+K   +  ++V  +L+++YA     +D
Sbjct: 231 MGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIID 290

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
             RL F +M   + + W+ +I  YA S      L +F  M    V  N ++F+  ++ACA
Sbjct: 291 AQRL-FEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACA 349

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           S+  +  GK IH+ V+K G  SN+ V N+I+D+Y +   + ++ + F+E+ +++ +TWNT
Sbjct: 350 SSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNT 409

Query: 286 IIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           II GY + G  E  +N+F+ M      P   T++S++ A A+LAAL  G Q+H+  ++  
Sbjct: 410 IIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTM 469

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
            + +  +AN+LIDMYAKCG I+D++  F +M+ RD V+W +M+ GY  HG   EA+ LFD
Sbjct: 470 YNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFD 529

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRA 463
            M  +  +P+++ F+ VL+ACS+AGL+ +G  +F+SM+ DY++ P  E Y C+V LLGR 
Sbjct: 530 MMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRL 589

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           GR  EA +LI  + ++P   VW  LLGAC  H+  +LG++ A  VL+++P+   T+++LS
Sbjct: 590 GRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLS 649

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           N+YA  G+W+  A  RK M+    +KE G+SW+E +  V  F   D      + +  +LE
Sbjct: 650 NMYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVENQGVVHYFSVGDTSHPDIKLICAMLE 709

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGE 608
            L +   +  Y PD + ++ D++ +
Sbjct: 710 WLNKKTRDAGYVPDCNAVLLDVQDD 734



 Score =  248 bits (632), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 152/536 (28%), Positives = 279/536 (52%), Gaps = 20/536 (3%)

Query: 16  HKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSI--LATN-LIKSYFDEGLIEEARTLFDEM 72
           H +  II+     +    +     ++ +G S+   A N L+  Y     +++A  LFDEM
Sbjct: 39  HMLQQIIRNGADPIAGKHLHCH--ILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEM 96

Query: 73  PERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR--NEVNPNAFTLSSVLKACKGMKSLSN 130
           P+ + +S+  +  GY+  +  +QA    + + +  +EVNP  F  +++LK    M     
Sbjct: 97  PQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHEVNP--FVFTTLLKLLVSMDLAHL 154

Query: 131 AALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYA 190
              +H    K G     +V  +L+D Y+    ++D AR VF+D+  K+ VSWT ++  YA
Sbjct: 155 CWTLHACVYKLGHHADAFVGTALIDAYSVRG-NVDVARHVFDDICCKDMVSWTGMVACYA 213

Query: 191 HSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLP 250
            +      L +F +M + G + N ++ S A+++C      + GK +H   +K  +  +L 
Sbjct: 214 ENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLF 273

Query: 251 VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSER 309
           V  ++L++Y +   + DA + F+EM + DLI W+ +IA Y +S  S E L++F +M+   
Sbjct: 274 VGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTS 333

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
             PN FTF S++ ACA+  +L  G+Q+H+ +++ GL+ N+ ++NA++D+YAKCG I +S 
Sbjct: 334 VVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSM 393

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
           K+F E+ DR+ VTW ++++GY   G G+ A+ LF  M++  ++P  + + +VL A +   
Sbjct: 394 KLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLA 453

Query: 430 LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
            ++ GL+          N +  +   ++D+  + GR+ +A      M  K DE  W  ++
Sbjct: 454 ALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMN-KRDEVSWNAMI 512

Query: 490 GACKEH--RLPNLGKLAALRVLDLKPNMMGTYIILSN------IYAAEGKWEEFAK 537
                H   +  L     ++  D KPN +    +LS       +Y  +  +E  +K
Sbjct: 513 CGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSK 568


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/563 (35%), Positives = 309/563 (54%), Gaps = 2/563 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            L   L+    + G +  AR LFD+ P+ DV  W  ++  Y+       A  ++  M   
Sbjct: 108 FLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVA 167

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V+P+ F+   VLKAC  + +L     VHG   + G E  ++V+N L+ +YA C   +  
Sbjct: 168 CVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCG-EIVR 226

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  VF  +  +  VSWT++I+GYA +G     L +F EM    V  +  +    +RA   
Sbjct: 227 ANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTD 286

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  GK IH  VIK G      ++ S+  +Y +   +  A  +F+++    LI WN +
Sbjct: 287 VEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAM 346

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+GY K+G + E + +F  MKS+   P+  T TS IAACA + +L   + +   I     
Sbjct: 347 ISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEF 406

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             ++ +  +LID YAKCG++  ++ +F  + D+D+V W++MM+GYG HG G+E+I LF  
Sbjct: 407 RNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHA 466

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M ++GV P+ + F+ +LTAC ++GLV+EG   F  M DY + P  + Y CVVDLLGRAG 
Sbjct: 467 MRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMRDYGIEPRHQHYACVVDLLGRAGH 526

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           +  AY  + +MP +P  SVWG LL ACK HR   LG+ AA R+  L P   G Y+ LSN+
Sbjct: 527 LDRAYNFVMNMPIEPGVSVWGALLSACKIHRHVTLGEYAAERLFSLDPYNTGHYVQLSNL 586

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           YA+   W+  AK R +MR  G  K +G S IE+  K+  F A DK    ++ ++  +E L
Sbjct: 587 YASSCLWDCVAKVRVLMREKGLTKHLGYSVIEINGKLQAFQAGDKTHPRSKEIFEEVEDL 646

Query: 586 IRHMNETAYEPDIDCLIHDLEGE 608
            R + E  + P  + ++HDL  E
Sbjct: 647 ERRLKEAGFVPHTESVLHDLNYE 669



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 91/210 (43%), Gaps = 7/210 (3%)

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
            Q++A ++  GL     L   L++  +  G +S ++K+F +  D D+  W +++  Y  H
Sbjct: 92  NQIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRH 151

Query: 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIY 453
           G    AIE++  M  + V PD   F  VL ACS    ++ G +    +  +    +  + 
Sbjct: 152 GFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQ 211

Query: 454 GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD--L 511
             +V L  + G +  A  +   +  +   S W  ++    ++  P    + ALR+     
Sbjct: 212 NGLVALYAKCGEIVRANAVFGRLVDRTIVS-WTSIISGYAQNGQP----IEALRIFSEMR 266

Query: 512 KPNMMGTYIILSNIYAAEGKWEEFAKFRKI 541
           K N+   +I L ++  A    E+    + I
Sbjct: 267 KTNVRPDWIALVSVLRAYTDVEDLEHGKSI 296


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/570 (35%), Positives = 339/570 (59%), Gaps = 10/570 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I+  +LI  Y     ++ A ++FD M ER+VVSWT ++ GY        +  +  EM  +
Sbjct: 40  IMNNDLIDMYGKCSRVDLACSVFDRMLERNVVSWTALMCGYLQEGNAKGSLALLCEMGYS 99

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V PN FT S+ LKAC  +  + N   +HGM +K G E    V N+ +D+Y+ C   +  
Sbjct: 100 GVKPNEFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCG-RIGM 158

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  VFN M ++N VSW  +I G+ H GNG   L +F+ M  +G   + ++F+  ++AC +
Sbjct: 159 AEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGA 218

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLP--VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
            G +  G  IHA++I  GF  ++   + ++I+D+Y +   L +A + FD + +K+LI+W+
Sbjct: 219 LGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLISWS 278

Query: 285 TIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR- 342
            +I G+ + G+  E +++F +++    + + F  + ++   A LA +  G+Q+H  I++ 
Sbjct: 279 ALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILKV 338

Query: 343 -RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
             GLD  +++AN++IDMY KCG   +++++FSEM  R++V+WT M+ GYG HG G++AI 
Sbjct: 339 PSGLD--ISVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAIH 396

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLL 460
           LF+ M   G+  D + ++A+L+ACSH+GL+ E  +YF  + N++ + PN E Y C+VD+L
Sbjct: 397 LFNRMQLDGIELDEVAYLALLSACSHSGLIRESQEYFSRLCNNHQMKPNIEHYACMVDIL 456

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520
           GRAG++KEA  LI++M  KP+E +W  LL AC+ H    +G+     +  +  +    Y+
Sbjct: 457 GRAGQLKEAKNLIENMKLKPNEGIWQTLLSACRVHGNLEIGREVGEILFRMDTDNPVNYV 516

Query: 521 ILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYG 580
           ++SNIYA  G W+E  + RK+++  G KKE G SW+E+  ++  F   D     T+ ++ 
Sbjct: 517 MMSNIYAEAGYWKECERVRKLVKAKGLKKEAGQSWVEINKEIHFFYGGDDTHPLTEKIHE 576

Query: 581 VL-EMLIRHMNETAYEPDIDCLIHDLEGET 609
           +L EM  R   E  Y   +   +HD+E E+
Sbjct: 577 MLKEMERRVKEEVGYAYGLRFALHDVEEES 606



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 116/386 (30%), Positives = 206/386 (53%), Gaps = 5/386 (1%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM 174
           L+ +L+ C           VH  A+  G    + + N L+D+Y  C   +D A  VF+ M
Sbjct: 7   LAKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCS-RVDLACSVFDRM 65

Query: 175 KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGK 234
             +N VSWT L+ GY   GN  G L +  EM   GV+ N ++FS +++AC + G V  G 
Sbjct: 66  LERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGM 125

Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG 294
            IH   +K GF     V N+ +DMY +   +  A Q F++M  ++L++WN +IAG+   G
Sbjct: 126 QIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEG 185

Query: 295 SS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA--L 351
           +  + L +F +M+ +   P+ FTFTS + AC  L A+  G Q+HA ++ RG   ++   +
Sbjct: 186 NGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNII 245

Query: 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411
           A+A++D+YAKCG + ++QK+F  +  ++L++W++++ G+   G+  EA++LF ++ +S  
Sbjct: 246 ASAIVDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRESVS 305

Query: 412 RPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471
             D  V   ++   +   LV++G +    +       +  +   ++D+  + G  +EA  
Sbjct: 306 NVDGFVLSIMMGVFADLALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKCGLTEEAER 365

Query: 472 LIKSMPFKPDESVWGPLLGACKEHRL 497
           L   M  +   S W  ++    +H L
Sbjct: 366 LFSEMQVRNVVS-WTVMITGYGKHGL 390



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 115/451 (25%), Positives = 214/451 (47%), Gaps = 59/451 (13%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S++    I  Y   G I  A  +F++MP R++VSW  MIAG+T      ++  +F  M  
Sbjct: 140 SVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQG 199

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSI--YVENSLMDVYATCCIS 163
               P+ FT +S LKAC  + ++     +H   I  G   SI   + ++++D+YA C   
Sbjct: 200 QGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYL 259

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
            + A+ VF+ ++ KN +SW+ LI G+A  GN    + +F+++      ++ +  SI +  
Sbjct: 260 FE-AQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGV 318

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
            A    V  GK +H  ++K   G ++ V NSI+DMY +     +A + F EM  +++++W
Sbjct: 319 FADLALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSW 378

Query: 284 NTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
             +I GY K G  E  +++F++M+ +    +   + ++++AC+           H+G++R
Sbjct: 379 TVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLSACS-----------HSGLIR 427

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-----DLVTWTSMMIGYGAHGHGK 397
                                   +SQ+ FS + +      ++  +  M+   G  G  K
Sbjct: 428 ------------------------ESQEYFSRLCNNHQMKPNIEHYACMVDILGRAGQLK 463

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK----YFKSMNDYNVNPNKEIY 453
           EA  L + M    ++P+  ++  +L+AC   G ++ G +     F+   D  VN     Y
Sbjct: 464 EAKNLIENM---KLKPNEGIWQTLLSACRVHGNLEIGREVGEILFRMDTDNPVN-----Y 515

Query: 454 GCVVDLLGRAGRVKE---AYELIKSMPFKPD 481
             + ++   AG  KE     +L+K+   K +
Sbjct: 516 VMMSNIYAEAGYWKECERVRKLVKAKGLKKE 546


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/564 (35%), Positives = 317/564 (56%), Gaps = 3/564 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I+  +L+  Y   G IEEA  +FD     +VV W +M+  Y   +   +++ +F  M+  
Sbjct: 280 IMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAA 339

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V PN FT   +L+ C     +     +H + IK G +  +YV   L+D+Y+     +D 
Sbjct: 340 GVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGW-LDK 398

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A+ + + ++ K+ VSWT++I GY         L  FKEM   G+  +    + A+ ACA 
Sbjct: 399 AQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAG 458

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              V  G  IHA V   G+ +++ + N ++ +Y R     +A   F+ +  K+ ITWN +
Sbjct: 459 IKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGL 518

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+G+ +SG   E L +F KM       N FTF S I+A A LA +  G+Q+HA +++ G 
Sbjct: 519 ISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGY 578

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
                ++NALI +Y KCG+I D++  F EM+ R+ V+W +++     HG G EA++LFD+
Sbjct: 579 TSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQ 638

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAG 464
           M + G++P  + F+ VLTACSH GLV+EGL YFKSM N++ ++P  + Y CVVD+LGRAG
Sbjct: 639 MKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAG 698

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           ++  A   ++ MP   D  VW  LL ACK H+   +G+ AA  +L+L+P+   +Y++LSN
Sbjct: 699 QLDRAKRFVEEMPIPADSMVWRTLLSACKVHKNLEIGEFAAKHLLELEPHDSASYVLLSN 758

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
            YA  GKW    + RKIM+  G +KE G SWIEV++ V  F   D++      +Y  L  
Sbjct: 759 AYAVTGKWASRDQIRKIMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLADQIYNFLSH 818

Query: 585 LIRHMNETAYEPDIDCLIHDLEGE 608
           L   + +  Y+ +   L H+ E E
Sbjct: 819 LNDRLYKIGYKQENYHLFHEKEKE 842



 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 163/578 (28%), Positives = 282/578 (48%), Gaps = 30/578 (5%)

Query: 39  PLIPK-----------GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGY 87
           PL+P+           G  I+   LI  Y  +G +  AR +F+E+  RD VSW  +++GY
Sbjct: 59  PLVPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGY 118

Query: 88  TSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSI 147
                  +A  ++ EM R+ V P  + LSS+L AC   +      L+H    K+G     
Sbjct: 119 AQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSET 178

Query: 148 YVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLL 207
           +V N+L+ +Y   C S   A  VF DM + + V++ TLI+G+A  G+G   LG+F EM L
Sbjct: 179 FVGNALISLYLR-CRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQL 237

Query: 208 EGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSD 267
            G+  +  + +  + AC++ G +  GK +H+ ++K G   +  +  S+LD+Y +   + +
Sbjct: 238 SGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEE 297

Query: 268 ANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACAT 326
           A Q FD     +++ WN ++  Y +    ++  ++F +M +    PN FT+  ++  C  
Sbjct: 298 ALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTH 357

Query: 327 LAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSM 386
              +  G+Q+H+  ++ G   ++ ++  LIDMY+K G +  +Q+I   + ++D+V+WTSM
Sbjct: 358 TGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSM 417

Query: 387 MIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV 446
           + GY  H   KEA+E F EM   G+ PD I   + ++AC+    V +G +    +     
Sbjct: 418 IAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGY 477

Query: 447 NPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAAL 506
           + +  I+  +V L  R G  KEA+   +++  K +   W  L+    +  L     L   
Sbjct: 478 SADVSIWNGLVYLYARCGISKEAFSSFEAIEHK-EGITWNGLISGFAQSGLYEEA-LKVF 535

Query: 507 RVLDLKPNMMGTYIILSNIYA----AEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKV 562
             +D        +  +S+I A    A+ K  +    R I  G  S+ E+  + I +  K 
Sbjct: 536 MKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGK- 594

Query: 563 CGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDC 600
           CG I + KM           EM  R  NE ++   I C
Sbjct: 595 CGSIEDAKM--------DFFEMTKR--NEVSWNTIITC 622



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 116/428 (27%), Positives = 216/428 (50%), Gaps = 4/428 (0%)

Query: 72  MPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGM-KSLSN 130
           M  R   S+   +AG+ + +   +   +F    R  +   A   +  L+AC+G  +    
Sbjct: 1   MTPRGAASFNRPLAGFLAPDDPEKLLPLFAAKCRQYMVLGAVDFACALRACRGSGRRWPL 60

Query: 131 AALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYA 190
              +H  AI  GL G   + N L+D+YA     +  AR VF ++  +++VSW  +++GYA
Sbjct: 61  VPEIHAKAIICGLSGYRIIGNLLIDLYAKKGF-VRRARRVFEELSVRDNVSWVAVLSGYA 119

Query: 191 HSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLP 250
            +G G   + +++EM   GV   PY  S  + AC  T     G+LIH  V K GF S   
Sbjct: 120 QNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETF 179

Query: 251 VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSER 309
           V N+++ +Y R      A++ F +M   D +T+NT+I+G+ + G  +  L +F +M+   
Sbjct: 180 VGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSG 239

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
            SP+  T  S++AAC+ +  L  G+Q+H+ +++ G+  +  +  +L+D+Y K G+I ++ 
Sbjct: 240 LSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEAL 299

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
           +IF      ++V W  M++ YG      ++ ++F  M+ +GVRP++  +  +L  C+H G
Sbjct: 300 QIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTG 359

Query: 430 LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
            +  G +            +  + G ++D+  + G + +A + I  M  + D   W  ++
Sbjct: 360 EIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKA-QRILDMIEEKDVVSWTSMI 418

Query: 490 GACKEHRL 497
               +H  
Sbjct: 419 AGYVQHEF 426


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/497 (38%), Positives = 304/497 (61%), Gaps = 7/497 (1%)

Query: 117 SVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNARLVFNDMK 175
           SVL  C    ++     VH   IK   E  +Y+   L+ +Y  C C+   +AR V ++M 
Sbjct: 15  SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLG--DARRVLDEMP 72

Query: 176 WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKL 235
            +N VSWT +I+GY+  G     L +F EML+ G   N ++F+  + +C S+     G+ 
Sbjct: 73  ERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQ 132

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG- 294
           IH+ VIK  F S++ V +S+LDMY +   + +A + FD + E+D+++   II+GY + G 
Sbjct: 133 IHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGL 192

Query: 295 SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
             E L++F +++ E    N  T+ S++ A + LAAL  G+QVH+ ++R  L   + L N+
Sbjct: 193 DEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNS 252

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG-VRP 413
           LIDMY+KCG+++ S++IF  M +R +++W +M++GY  HG G+EA+ELF  M +   V+P
Sbjct: 253 LIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKP 312

Query: 414 DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYN--VNPNKEIYGCVVDLLGRAGRVKEAYE 471
           D + F+AVL+ CSH G+ D GL+ F  M +      P  E YGCVVDL GRAGRV+EA+E
Sbjct: 313 DSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFE 372

Query: 472 LIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK 531
            IK MPF+P  ++WG LLGAC+ H+  ++G+  A R+L+++    G Y+ILSN+YA+ G+
Sbjct: 373 FIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGR 432

Query: 532 WEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNE 591
           W++    R++M+     KE G SWIE+   +  F A+D+     + V+  +  L   + E
Sbjct: 433 WDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKE 492

Query: 592 TAYEPDIDCLIHDLEGE 608
             Y P++ C+++D++ E
Sbjct: 493 AGYVPELSCVLYDVDDE 509



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 101/348 (29%), Positives = 184/348 (52%), Gaps = 6/348 (1%)

Query: 45  PSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
           P  L T LI  Y     + +AR + DEMPER+VVSWT MI+GY+     ++A  +FVEM+
Sbjct: 44  PVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEML 103

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
            +   PN FT ++VL +C           +H + IK   E  I+V +SL+D+YA     +
Sbjct: 104 MSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAG-KI 162

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
             AR VF+ +  ++ VS T +I+GYA  G     L +F+ +  EG+  N  +++  + A 
Sbjct: 163 CEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTAL 222

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           +    +  G+ +H+ V++      + + NS++DMY +   L+ + + FD M E+ +I+WN
Sbjct: 223 SGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWN 282

Query: 285 TIIAGYEKSG-SSECLNMFSKMKSE-RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
            ++ GY K G   E + +F  MK E +  P+  TF ++++ C+       G ++   +V 
Sbjct: 283 AMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVN 342

Query: 343 R--GLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMM 387
           +  G +  +     ++D++ + G + ++ +   +M  +     W S++
Sbjct: 343 QKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLL 390



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 164/294 (55%), Gaps = 2/294 (0%)

Query: 205 MLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264
           M ++G+E+    +   +  C S   +  G+ +HA +IK  +   + +   ++ +Y +  C
Sbjct: 1   MGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRC 60

Query: 265 LSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAA 323
           L DA +  DEM E+++++W  +I+GY + G +SE L++F +M     +PN FTF +++ +
Sbjct: 61  LGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTS 120

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTW 383
           C + +    G+Q+H+ +++   + ++ + ++L+DMYAK G I +++++F  + +RD+V+ 
Sbjct: 121 CTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSC 180

Query: 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND 443
           T+++ GY   G  +EA++LF  + + G+R + + + +VLTA S    +D G +    +  
Sbjct: 181 TAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLR 240

Query: 444 YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
             +     +   ++D+  + G +  +  +  SMP +   S W  +L    +H L
Sbjct: 241 AKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVIS-WNAMLVGYSKHGL 293


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/602 (35%), Positives = 339/602 (56%), Gaps = 39/602 (6%)

Query: 41  IPKGPSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTV 99
           IP+ P++ + N L+ +Y   G +++ + +FD MP  DVVSW  +++GY      +++  V
Sbjct: 66  IPQ-PNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRV 124

Query: 100 FVEMVRN-EVNPNAFTLSS--VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDV 156
           +  M+++  VN N  T S+  +L + +G   L     +HG   K G +  ++V + L+D+
Sbjct: 125 YNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQ--IHGQIFKFGYQSYLFVGSPLVDM 182

Query: 157 YATC------------------------------CISMDNARLVFNDMKWKNDVSWTTLI 186
           YA                                C  +  A  +F++M  K+ +SWTT+I
Sbjct: 183 YAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTII 242

Query: 187 TGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFG 246
           TG   +G     +  FKEM +EG  M+ ++F   + AC     +  GK IHA +I+  + 
Sbjct: 243 TGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQ 302

Query: 247 SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKM 305
            N+ V +++LDMYC+   +  A   F +M  K++I+W  ++ GY ++G S E + +F  M
Sbjct: 303 DNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDM 362

Query: 306 KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNI 365
           +     P+ FT  S+I++CA LA+L  G Q H   +  GL   + ++NALI +Y KCG++
Sbjct: 363 QRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSL 422

Query: 366 SDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTAC 425
             + ++F EM  RD V+WT+++ GY   G   E I LF+ M+  G+ PD + F+ VL+AC
Sbjct: 423 EHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSAC 482

Query: 426 SHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESV 484
           S AGLV++G  YF+ M  ++ + P  + Y C++DLL RAGR++EA   I  MPF PD   
Sbjct: 483 SRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIG 542

Query: 485 WGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544
           W  LL +C+ +    +GK AA  +  L+P    +YI+LS+IYAA+GKW++ AK RK MR 
Sbjct: 543 WATLLSSCRLNGNLEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMRE 602

Query: 545 MGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHD 604
           MG KKE G SWI+ ++KV  F A+D+    +  +Y  LE L   M E  Y PD+  ++HD
Sbjct: 603 MGVKKEPGHSWIKYKNKVHIFSADDRSSPFSDQIYAKLESLYLKMIEEGYVPDMSFVLHD 662

Query: 605 LE 606
           +E
Sbjct: 663 VE 664



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 120/428 (28%), Positives = 218/428 (50%), Gaps = 39/428 (9%)

Query: 95  QAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLM 154
           Q   +   ++R   NP  F  ++++     +  L NA  V     +  L    +  N+L+
Sbjct: 23  QVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQPNL----FSWNTLL 78

Query: 155 DVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG-VEMN 213
             Y+      D  R VF+ M   + VSW +L++GYA +G     + V+  ML +G V +N
Sbjct: 79  SAYSKLGYLQDMQR-VFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLN 137

Query: 214 PYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFD 273
             +FS  +   ++ G+V  G+ IH  + K G+ S L V + ++DMY +   ++DAN+ F+
Sbjct: 138 RITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFE 197

Query: 274 E-------------------------------MTEKDLITWNTIIAGYEKSG-SSECLNM 301
           E                               M EKD I+W TII G  ++G   E ++ 
Sbjct: 198 EIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDK 257

Query: 302 FSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK 361
           F +M  E F  + FTF S++ AC    AL  G+Q+HA I+R     N+ + +AL+DMY K
Sbjct: 258 FKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCK 317

Query: 362 CGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAV 421
           C N+  ++ +F +M  +++++WT+M++GYG +G+ +EA+ +F +M ++ + PD     +V
Sbjct: 318 CRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSV 377

Query: 422 LTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481
           +++C++   ++EG ++        +     +   ++ L G+ G ++ A++L   M  + D
Sbjct: 378 ISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIR-D 436

Query: 482 ESVWGPLL 489
           E  W  L+
Sbjct: 437 EVSWTALV 444



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 138/327 (42%), Gaps = 64/327 (19%)

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
           ++ A++ C      +  K +H  +I+        + N++++ Y +   L +A   FD + 
Sbjct: 8   YTAALKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIP 67

Query: 277 EKDLITWNTIIAGYEKSGS--------------------------------SECLNMFSK 304
           + +L +WNT+++ Y K G                                 SE + +++ 
Sbjct: 68  QPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNM 127

Query: 305 M-KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG 363
           M K    + N  TF++++   +    +  G+Q+H  I + G    L + + L+DMYAK G
Sbjct: 128 MLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTG 187

Query: 364 NISDSQKIFSE-------------------------------MSDRDLVTWTSMMIGYGA 392
            I+D+ +IF E                               M ++D ++WT+++ G   
Sbjct: 188 FINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQ 247

Query: 393 HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEI 452
           +G  KEA++ F EM   G   D+  F +VLTAC     +DEG +    +   +   N  +
Sbjct: 248 NGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFV 307

Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFK 479
              ++D+  +   VK A  + + M  K
Sbjct: 308 GSALLDMYCKCRNVKYAEAVFRKMRHK 334


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/600 (34%), Positives = 337/600 (56%), Gaps = 36/600 (6%)

Query: 41  IPKGPSILA-TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTV 99
           IP+ P++ +  NL+ +Y   GLI E  + F+++P+RD V+W V+I GY+       A   
Sbjct: 67  IPQ-PNLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKA 125

Query: 100 FVEMVRN-EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA 158
           +  M+R+   N    TL ++LK       +S    +HG  IK G E  + V + L+ +YA
Sbjct: 126 YNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYA 185

Query: 159 TC-CIS-----------------------------MDNARLVFNDMKWKNDVSWTTLITG 188
              CIS                             +++A  +F  M+ K+ VSW  +I G
Sbjct: 186 NVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGME-KDSVSWAAMIKG 244

Query: 189 YAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSN 248
            A +G     +  F+EM ++G++M+ Y F   + AC   G ++ GK IHA +I+  F  +
Sbjct: 245 LAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDH 304

Query: 249 LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKS 307
           + V ++++DMYC+  CL  A   FD M +K++++W  ++ GY ++G + E + +F  M+ 
Sbjct: 305 IYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQR 364

Query: 308 ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISD 367
               P+ +T    I+ACA +++L  G Q H   +  GL   + ++N+L+ +Y KCG+I D
Sbjct: 365 SGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDD 424

Query: 368 SQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH 427
           S ++F+EM+ RD V+WT+M+  Y   G   E I+LFD+MV+ G++PD +    V++ACS 
Sbjct: 425 STRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSR 484

Query: 428 AGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWG 486
           AGLV++G +YFK M ++Y + P+   Y C++DL  R+GR++EA   I  MPF PD   W 
Sbjct: 485 AGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWT 544

Query: 487 PLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546
            LL AC+      +GK AA  +++L P+    Y +LS+IYA++GKW+  A+ R+ MR   
Sbjct: 545 TLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKN 604

Query: 547 SKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
            KKE G SWI+ + K+  F A+D+   +   +Y  LE L   + +  Y+PD   + HD+E
Sbjct: 605 VKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVE 664



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 116/449 (25%), Positives = 211/449 (46%), Gaps = 45/449 (10%)

Query: 80  WTVMIAGYTSFNCHNQAWTVFVEMVRNEV-----NPNAFTLSSVLKACKGMKSLSNAALV 134
           ++V I         NQ  + +V+M+   +      P  F  ++++ A   MKS + A  V
Sbjct: 6   YSVQIKQCIGLGARNQ--SRYVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRV 63

Query: 135 HGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGN 194
                +  L    +  N+L+  Y+   + +      F  +  ++ V+W  LI GY+ SG 
Sbjct: 64  FDRIPQPNL----FSWNNLLLAYSKAGL-ISEMESTFEKLPDRDGVTWNVLIEGYSLSGL 118

Query: 195 GYGGLGVFKEMLLE-GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMN 253
               +  +  M+ +    +   +    ++  +S G VS GK IH  VIK GF S L V +
Sbjct: 119 VGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGS 178

Query: 254 SILDMYCRFDCLSDANQYF----DEMT--------------------------EKDLITW 283
            +L MY    C+SDA + F    D  T                          EKD ++W
Sbjct: 179 PLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSW 238

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
             +I G  ++G + E +  F +MK +    + + F S++ AC  L A++ G+Q+HA I+R
Sbjct: 239 AAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIR 298

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
                ++ + +ALIDMY KC  +  ++ +F  M  +++V+WT+M++GYG  G  +EA+++
Sbjct: 299 TNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKI 358

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           F +M +SG+ PD       ++AC++   ++EG ++        +     +   +V L G+
Sbjct: 359 FLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGK 418

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGA 491
            G + ++  L   M  + D   W  ++ A
Sbjct: 419 CGDIDDSTRLFNEMNVR-DAVSWTAMVSA 446


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/561 (34%), Positives = 320/561 (57%), Gaps = 4/561 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +++   +  Y     +E     F  M   ++ S   +++G+      +Q   + ++++  
Sbjct: 126 LISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVE 185

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
              PN +T  S+LK C     L+    +HG  IK G+    ++ NSL++VYA C  S + 
Sbjct: 186 GFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCG-SANY 244

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  VF ++  ++ VSWT LITG+   G G  GL +F +ML EG   N Y+F   +R+C+S
Sbjct: 245 ACKVFGEIPERDVVSWTALITGFVAEGYG-SGLRIFNQMLAEGFNPNMYTFISILRSCSS 303

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              V  GK +HA ++K+    N  V  +++DMY +   L DA   F+ + ++DL  W  I
Sbjct: 304 LSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVI 363

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           +AGY + G  E  +  F +M+ E   PN FT  S ++ C+ +A L  G+Q+H+  ++ G 
Sbjct: 364 VAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQ 423

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
            G++ +A+AL+DMYAKCG + D++ +F  +  RD V+W +++ GY  HG G +A++ F+ 
Sbjct: 424 SGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEA 483

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAG 464
           M+  G  PD + F+ VL+ACSH GL++EG K+F S++  Y + P  E Y C+VD+LGRAG
Sbjct: 484 MLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAG 543

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           +  E    I+ M    +  +W  +LGACK H     G+ AA+++ +L+P +   YI+LSN
Sbjct: 544 KFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSN 603

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           ++AA+G W++    R +M   G KKE G SW+EV  +V  F+++D      + ++  L+ 
Sbjct: 604 MFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQD 663

Query: 585 LIRHMNETAYEPDIDCLIHDL 605
           L + +    Y P+ D ++H++
Sbjct: 664 LHQKLMSVGYTPNTDHVLHNV 684



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 155/560 (27%), Positives = 271/560 (48%), Gaps = 47/560 (8%)

Query: 21  IIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSW 80
           I+K+ +  V K+ I  D        S L ++L+  Y     ++ AR + +EMP +DV  W
Sbjct: 7   ILKKIIFRVIKNGICPD--------SHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQW 58

Query: 81  TVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIK 140
              ++   S     +A  +F  M    +  N F  +S++ A   +        +H    K
Sbjct: 59  NQKLSSANSPYPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCK 118

Query: 141 EGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLG 200
            G E  I + N+ + +Y     S++N    F  M  +N  S   L++G+  +     G  
Sbjct: 119 YGFESDILISNAFVTMYMKT-QSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPR 177

Query: 201 VFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYC 260
           +  ++L+EG E N Y+F   ++ CAS G ++ GK IH  VIK G   +  + NS++++Y 
Sbjct: 178 ILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYA 237

Query: 261 RFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSI 320
           +    + A + F E+ E+D+++W  +I G+   G    L +F++M +E F+PN +TF SI
Sbjct: 238 KCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGLRIFNQMLAEGFNPNMYTFISI 297

Query: 321 IAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDL 380
           + +C++L+ +  G+QVHA IV+  LDGN  +  AL+DMYAK   + D++ IF+ +  RDL
Sbjct: 298 LRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDL 357

Query: 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG------ 434
             WT ++ GY   G G++A++ F +M + GV+P+     + L+ CS    +D G      
Sbjct: 358 FAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSM 417

Query: 435 -LKYFKSMNDYNVNPNKEIY---GCVVDL------------------------LGRAGRV 466
            +K  +S + +  +   ++Y   GCV D                          G+ G+ 
Sbjct: 418 AIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKA 477

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKL---AALRVLDLKPNMMGTYIILS 523
            +A+E +      PDE  +  +L AC    L   GK    +  ++  + P  +  Y  + 
Sbjct: 478 LKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPT-IEHYACMV 536

Query: 524 NIYAAEGKWEEFAKFRKIMR 543
           +I    GK+ E   F + M+
Sbjct: 537 DILGRAGKFHEVESFIEEMK 556


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 214/565 (37%), Positives = 317/565 (56%), Gaps = 36/565 (6%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S L   L+++Y     +  AR +FDE+PER+V+   VMI  Y +   + +   VF  M  
Sbjct: 75  SSLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCS 134

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             V P+ +T   VLKAC    ++     +HG A K GL  +++V N L+ +Y  C   + 
Sbjct: 135 CHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGF-LS 193

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            ARLV ++M  ++ VSW +L+ GYA +      L V +EM  E V+++  + ++A     
Sbjct: 194 EARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREM--ESVKISHDAGTMA----- 246

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
                    L+ A        SN    N    MY +          F +M +K L++WN 
Sbjct: 247 --------SLLPAV-------SNTTTENV---MYVK--------DMFFKMGKKSLVSWNV 280

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I  Y K+    E + ++S M+++ F P+  + TS++ AC   +ALS G+++H  I R+ 
Sbjct: 281 MIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKK 340

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           L  NL L NALIDMYAKCG +  ++ +F  M  RD+V+WT+M+  YG  G G +A+ LF 
Sbjct: 341 LIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFS 400

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRA 463
           +M  SG+ PD I F+  L ACSHAGL++EG   FK M D Y + P  E   C+VDLLGRA
Sbjct: 401 KMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRA 460

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G+VKEAY+ I+ MP +P+E VWG LLGAC+ H   ++G LAA ++  L P   G Y++LS
Sbjct: 461 GKVKEAYKFIQEMPMEPNERVWGALLGACRVHSNTDIGLLAADKLFQLAPEQSGYYVLLS 520

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           NIYA  G+WEE    R IM+  G KK  G S +EV   +  F+  D+    +  +Y  L+
Sbjct: 521 NIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSAEIYRELD 580

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGE 608
           +L++ M E  Y PD +  +HD+E E
Sbjct: 581 VLVKKMKELGYVPDSESALHDVEEE 605


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/572 (34%), Positives = 325/572 (56%), Gaps = 41/572 (7%)

Query: 60  GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119
           G ++EA +LF  MPERD  +W  M++G+   +   +A   F  M +     N +T +S L
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGL 159

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179
            AC G+  ++    +H +  K      +Y+ ++L+D+Y+ C  ++++A+ VF++M  +N 
Sbjct: 160 SACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCG-NVNDAQQVFDEMGDRNV 218

Query: 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAA 239
           VSW +LIT Y  +G     L VF+ ML   VE +  + +  + ACAS   +  G+ +HA 
Sbjct: 219 VSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHAR 278

Query: 240 VIK-HGFGSNLPVMNSILDMYCRFDCLSDANQYFD------------------------- 273
           V+K     +++ + N+ +DMY +   + +A   FD                         
Sbjct: 279 VVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKA 338

Query: 274 ------EMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACAT 326
                 +M E+++++WN +IAGY ++G +E  L++F  +K E   P  +TF +I+ ACA 
Sbjct: 339 ARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACAD 398

Query: 327 LAALSCGQQVHAGIVRRGL------DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDL 380
           LA L  G Q H  +++ G       + ++ + N+LIDMY KCG + +   +F +M +RD 
Sbjct: 399 LADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDC 458

Query: 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS 440
           V+W +M+IG+  +G+G EA+ELF EM+ SG +PD I  + VL+AC HAG V+EG  YF S
Sbjct: 459 VSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSS 518

Query: 441 MN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN 499
           M  D+ V P ++ Y C+VDLLGRAG ++EA  +I+ MP +PD  +WG LL ACK HR   
Sbjct: 519 MTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEMPVQPDSVIWGSLLAACKVHRNIT 578

Query: 500 LGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVR 559
           LGK  A ++ +++ +  G Y++LSN+YA  GKW +    RK+MR  G  K+ G SWI++ 
Sbjct: 579 LGKYVAEKLFEVETSNSGPYVLLSNMYAELGKWGDAMNVRKLMRKEGVTKQPGCSWIKIP 638

Query: 560 DKVCGFIANDKMGSHTQYVYGVLEMLIRHMNE 591
                F+  DK     + ++ +L++LI  M +
Sbjct: 639 GHAHVFMVKDKSHPRKKQIHSLLDILIAEMRQ 670



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/446 (26%), Positives = 218/446 (48%), Gaps = 86/446 (19%)

Query: 111 NAFTLSS----VLKACKGMK-SLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           ++FT+SS    +L +C  +K S  +   VH   IK G    ++++N L+D YA C  S++
Sbjct: 14  SSFTVSSPFAKLLDSCIKLKLSAIDVRCVHASVIKSGFSNEVFIQNRLIDAYAKCG-SLE 72

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSG------------------------NGYG---- 197
           + R +F+ M  +N  +W +++TG    G                        +G+     
Sbjct: 73  DGRQLFDKMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDR 132

Query: 198 ---GLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNS 254
               L  F  M  EG  +N Y+F+  + AC+    ++ G  IH+ + K    S++ + ++
Sbjct: 133 CEEALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSA 192

Query: 255 ILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPN 313
           ++DMY +   ++DA Q FDEM ++++++WN++I  YE++G + E L +F  M      P+
Sbjct: 193 LVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPD 252

Query: 314 CFTFTSIIAACATLAALSCGQQVHAGIVRRG-LDGNLALANALIDMYAKCGNISDSQKI- 371
             T  S+I+ACA+L+A+  GQ+VHA +V+   L  ++ L+NA +DMYAKC  I +++ I 
Sbjct: 253 EVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIF 312

Query: 372 ------------------------------FSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
                                         F++M++R++V+W +++ GY  +G  +EA+ 
Sbjct: 313 DSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALS 372

Query: 402 LFDEMVKSGVRPDRIVFMAVLTAC-----------SHAGLVDEGLKYFKSMNDYNVNPNK 450
           LF  + +  V P    F  +L AC           +H  ++  G K+     D     N 
Sbjct: 373 LFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNS 432

Query: 451 EIYGCVVDLLGRAGRVKEAYELIKSM 476
                ++D+  + G V+E Y + + M
Sbjct: 433 -----LIDMYVKCGCVEEGYLVFRKM 453



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/421 (27%), Positives = 192/421 (45%), Gaps = 47/421 (11%)

Query: 40  LIPKGPSI----LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQ 95
           LI K P +    + + L+  Y   G + +A+ +FDEM +R+VVSW  +I  Y       +
Sbjct: 177 LIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVE 236

Query: 96  AWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIK-EGLEGSIYVENSLM 154
           A  VF  M+ + V P+  TL+SV+ AC  + ++     VH   +K + L   I + N+ +
Sbjct: 237 ALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFV 296

Query: 155 DVYATC------------------------------CISMDNARLVFNDMKWKNDVSWTT 184
           D+YA C                                S   ARL+F  M  +N VSW  
Sbjct: 297 DMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNA 356

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG 244
           LI GY  +G     L +F  +  E V    Y+F+  ++ACA    +  G   H  V+KHG
Sbjct: 357 LIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHG 416

Query: 245 FG------SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSE 297
           F        ++ V NS++DMY +  C+ +    F +M E+D ++WN +I G+ ++G  +E
Sbjct: 417 FKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNE 476

Query: 298 CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-GLDGNLALANALI 356
            L +F +M      P+  T   +++AC     +  G+   + + R  G+         ++
Sbjct: 477 ALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMV 536

Query: 357 DMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHGH---GKEAIELFDEMVKSGVR 412
           D+  + G + +++ I  EM  + D V W S++     H +   GK   E   E+  S   
Sbjct: 537 DLLGRAGFLEEAKSIIEEMPVQPDSVIWGSLLAACKVHRNITLGKYVAEKLFEVETSNSG 596

Query: 413 P 413
           P
Sbjct: 597 P 597



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 146/279 (52%), Gaps = 33/279 (11%)

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
           + +HA+VIK GF + + + N ++D Y +   L D  Q FD+M ++++ TWN+++ G  K 
Sbjct: 40  RCVHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKL 99

Query: 294 G--------------------------------SSECLNMFSKMKSERFSPNCFTFTSII 321
           G                                  E L  F+ M  E F  N +TF S +
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGL 159

Query: 322 AACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLV 381
           +AC+ L  ++ G Q+H+ I +     ++ + +AL+DMY+KCGN++D+Q++F EM DR++V
Sbjct: 160 SACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVV 219

Query: 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441
           +W S++  Y  +G   EA+++F  M++S V PD +   +V++AC+    +  G +    +
Sbjct: 220 SWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARV 279

Query: 442 NDYNVNPNKEIYG-CVVDLLGRAGRVKEAYELIKSMPFK 479
              +   N  I     VD+  +  R+KEA  +  SMP +
Sbjct: 280 VKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIR 318



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 96/227 (42%), Gaps = 38/227 (16%)

Query: 317 FTSIIAACATLAALSCGQQ-VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSE- 374
           F  ++ +C  L   +   + VHA +++ G    + + N LID YAKCG++ D +++F + 
Sbjct: 22  FAKLLDSCIKLKLSAIDVRCVHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKM 81

Query: 375 ------------------------------MSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
                                         M +RD  TW SM+ G+  H   +EA+  F 
Sbjct: 82  PQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFA 141

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
            M K G   +   F + L+ACS    ++ G++    +       +  I   +VD+  + G
Sbjct: 142 MMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCG 201

Query: 465 RVKEAYELIKSMPFKPDESV--WGPLLGACKEHRLPNLGKLAALRVL 509
            V +A ++   M    D +V  W  L+  C E   P +  L   +V+
Sbjct: 202 NVNDAQQVFDEM---GDRNVVSWNSLI-TCYEQNGPAVEALKVFQVM 244


>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
           [Vitis vinifera]
          Length = 807

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/558 (36%), Positives = 321/558 (57%), Gaps = 8/558 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVS-----WTVMIAGYTSFNCHNQAWTVFVE 102
           L ++LI+ Y   G I+ A  +F+ + ++D V      W VMI+GY S  C +QA  +F++
Sbjct: 248 LVSSLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIK 307

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M+   + P+  T+ S+   C     ++    +HG+  K GL+ +I VE +L+D+Y  C  
Sbjct: 308 MMVWGIKPDYSTMVSLFSLCSESLDIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCG- 366

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            M     +F   +  N + W+ +I+  A SG     L +F E  +E    +       +R
Sbjct: 367 DMGTGLKIFRRSQNHNLIMWSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILVAVLR 426

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           AC+S      G  IH    K GF S++ V ++++D+Y +   +  + + F  +++KDL++
Sbjct: 427 ACSSLTLKPEGMQIHGLATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDLVS 486

Query: 283 WNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           WN +I+GY +   + E L  F  M+ E   PN  T   I++ CA L+ ++  ++VH  ++
Sbjct: 487 WNALISGYAQDECADEALKAFRDMQLEEIRPNTVTIACILSVCAHLSVMTLCKEVHGYLI 546

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           R+GL   + ++N+LI  YAKCG+I+ S   F +M +R+ V+W S+++G G H    E I 
Sbjct: 547 RQGLGSTVLVSNSLIATYAKCGDINSSLYTFEKMPERNDVSWNSIILGMGMHSRTDEMIV 606

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLL 460
           LFD+MV SG++PD + F A+L+ACSHAG VDEG KYFKSM  D+N+ P  E Y C+VDLL
Sbjct: 607 LFDKMVASGIKPDHVTFTAILSACSHAGRVDEGCKYFKSMVEDFNLKPQLEQYTCMVDLL 666

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520
           GRAG + +AY+LI +MP  PD+ +WG LLG+CK H    L ++ A  +  L P+ +G  +
Sbjct: 667 GRAGHLNQAYDLIMAMPCTPDDRIWGSLLGSCKNHGDEILAEIVANHIFKLVPSSVGYRV 726

Query: 521 ILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYG 580
           +L+N+Y   GK  E +K R  ++ MG KK+ G SWIEV +    FIA D+  S +  +Y 
Sbjct: 727 LLANLYENLGKGREGSKVRSEIKDMGLKKKPGCSWIEVDNNFHIFIAGDRSHSQSDEIYA 786

Query: 581 VLEMLIRHMNETAYEPDI 598
            +E L   +    Y P I
Sbjct: 787 AVESLTTEIKRAGYIPQI 804



 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 131/503 (26%), Positives = 252/503 (50%), Gaps = 10/503 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV-RN 106
           +  +L+  Y+  G++E+A  +F++MPE D+VSW  MI+G+     + ++   F  MV   
Sbjct: 146 VVNSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQKSMDYTRSLMFFRSMVWEF 205

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + PN     S + +C  ++SL++   +HG+ +K GL+   Y+ +SL+++Y  C  S+ N
Sbjct: 206 GIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKSGLDVEEYLVSSLIEMYMKCG-SIKN 264

Query: 167 ARLVFN-----DMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
           A  +FN     D   +N V W  +I+GY  +G     L +F +M++ G++ +  +     
Sbjct: 265 AENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLF 324

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
             C+ +  ++FGK IH  + K G  +N+ V  ++LDMY +   +    + F      +LI
Sbjct: 325 SLCSESLDIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQNHNLI 384

Query: 282 TWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
            W+ +I+   +SG  ++ L +F + K E    +     +++ AC++L     G Q+H   
Sbjct: 385 MWSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILVAVLRACSSLTLKPEGMQIHGLA 444

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
            + G   ++ + +AL+D+YAKC ++  S+K+F  +S +DLV+W +++ GY       EA+
Sbjct: 445 TKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDLVSWNALISGYAQDECADEAL 504

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLL 460
           + F +M    +RP+ +    +L+ C+H  ++    +    +    +     +   ++   
Sbjct: 505 KAFRDMQLEEIRPNTVTIACILSVCAHLSVMTLCKEVHGYLIRQGLGSTVLVSNSLIATY 564

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD-LKPNMMGTY 519
            + G +  +    + MP + D S    +LG     R   +  L    V   +KP+ +   
Sbjct: 565 AKCGDINSSLYTFEKMPERNDVSWNSIILGMGMHSRTDEMIVLFDKMVASGIKPDHVTFT 624

Query: 520 IILSNIYAAEGKWEEFAKFRKIM 542
            ILS    A G+ +E  K+ K M
Sbjct: 625 AILSACSHA-GRVDEGCKYFKSM 646



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 116/451 (25%), Positives = 219/451 (48%), Gaps = 12/451 (2%)

Query: 83  MIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFT-LSSVLKACKGMKSLSNAALVHGMAIKE 141
           +I  YT     + A  V+++M+ + V    F     ++KA  G+  +     +HG  +K 
Sbjct: 79  VIREYTEDGFFDDAIGVYLKMLDDGVKVEEFRYFPCLIKAFGGLCDVYKGRQIHGHVLKL 138

Query: 142 GLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGV 201
           G+   + V NSL+ +Y  C + +++A  +F  M   + VSW T+I+G+  S +    L  
Sbjct: 139 GVLDDVSVVNSLLTMYWKCGV-VEDAVQMFEKMPEVDLVSWNTMISGFQKSMDYTRSLMF 197

Query: 202 FKEMLLE-GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYC 260
           F+ M+ E G+  N  +   ++ +C+S   ++ G+ IH  V+K G      +++S+++MY 
Sbjct: 198 FRSMVWEFGIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKSGLDVEEYLVSSLIEMYM 257

Query: 261 RFDCLSDANQYFDEMTEKD-----LITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNC 314
           +   + +A   F+ + +KD      + WN +I+GY  +G  S+ L +F KM      P+ 
Sbjct: 258 KCGSIKNAENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIKMMVWGIKPDY 317

Query: 315 FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSE 374
            T  S+ + C+    ++ G+Q+H  I + GL  N+ +  AL+DMY KCG++    KIF  
Sbjct: 318 STMVSLFSLCSESLDIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIFRR 377

Query: 375 MSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434
             + +L+ W++++      G   +A+ELF E        D  + +AVL ACS   L  EG
Sbjct: 378 SQNHNLIMWSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILVAVLRACSSLTLKPEG 437

Query: 435 LKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKE 494
           ++            +  +   +VDL  +   +  + ++   +  K D   W  L+    +
Sbjct: 438 MQIHGLATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQK-DLVSWNALISGYAQ 496

Query: 495 HRLPN--LGKLAALRVLDLKPNMMGTYIILS 523
               +  L     +++ +++PN +    ILS
Sbjct: 497 DECADEALKAFRDMQLEEIRPNTVTIACILS 527



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 44  GPSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           G ++L +N LI +Y   G I  +   F++MPER+ VSW  +I G    +  ++   +F +
Sbjct: 551 GSTVLVSNSLIATYAKCGDINSSLYTFEKMPERNDVSWNSIILGMGMHSRTDEMIVLFDK 610

Query: 103 MVRNEVNPNAFTLSSVLKAC 122
           MV + + P+  T +++L AC
Sbjct: 611 MVASGIKPDHVTFTAILSAC 630


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/562 (37%), Positives = 334/562 (59%), Gaps = 5/562 (0%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108
           A  L+  Y   G I  A  +F ++P+ DVVSW   I+G         A  + ++M  + +
Sbjct: 240 ANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGL 299

Query: 109 NPNAFTLSSVLKACKGMKSLSNAAL--VHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            PN FTLSS+LKAC G  + + A    +HG  IK   +   Y+  +L+D+YA   + +D+
Sbjct: 300 VPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGL-LDD 358

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR VF  +  K+ + W  LI+G +H G     L +F  M  EG ++N  + +  +++ AS
Sbjct: 359 ARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTAS 418

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +S    +HA   K GF S+  V+N ++D Y + +CL  AN+ F+E +  ++I + ++
Sbjct: 419 LEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSM 478

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I    +    E  + +F +M  +   P+ F  +S++ ACA+L+A   G+QVHA +++R  
Sbjct: 479 ITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKF 538

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             ++   NAL+  YAKCG+I D+   FS + D+ +V+W++M+ G   HGHGK A+++F  
Sbjct: 539 MTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGVVSWSAMIGGLAQHGHGKRALDVFRR 598

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAG 464
           MV   + P+ I   +VL AC+HAGLVDE   YF SM + + ++  +E Y C++DLLGRAG
Sbjct: 599 MVDERIAPNHITLTSVLCACNHAGLVDEAKGYFSSMKEMFGIDRTEEHYSCMIDLLGRAG 658

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           ++ +A EL+ SMPF+ + +VWG LL A + HR P LGKLAA ++  L+P   GT+++L+N
Sbjct: 659 KLDDAMELVNSMPFEANAAVWGALLAASRVHRDPELGKLAAEKLFVLEPEKSGTHVLLAN 718

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
            YA+ G W+E AK RK+M+    KKE  MSW+E++D+V  FI  DK     + +Y  LE 
Sbjct: 719 TYASAGMWDEVAKVRKLMKDSKVKKEPAMSWVELKDRVHTFIVGDKSHPRARDIYAKLEE 778

Query: 585 LIRHMNETAYEPDIDCLIHDLE 606
           L   M++  Y P+++  +HD++
Sbjct: 779 LGDLMSKAGYVPNLEVDLHDVD 800



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 141/486 (29%), Positives = 242/486 (49%), Gaps = 13/486 (2%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMP-ERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           G   +A  L+  Y   G ++EAR +FDE   +R+ VSW  M++ +   +  + A  +F E
Sbjct: 133 GDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGE 192

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           MV + V PN F  S V+ AC G + L     VH M ++ G +  ++  N+L+D+Y+    
Sbjct: 193 MVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLG- 251

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            +  A LVF  +   + VSW   I+G    G+    L +  +M   G+  N ++ S  ++
Sbjct: 252 DIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILK 311

Query: 223 --ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
             A A  G  + G+ IH  +IK    S+  +  +++DMY ++  L DA + F+ +  KDL
Sbjct: 312 ACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDL 371

Query: 281 ITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           + WN +I+G    G   E L++F +M+ E    N  T  +++ + A+L A+S   QVHA 
Sbjct: 372 LLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHAL 431

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
             + G   +  + N LID Y KC  +  + K+F E S  +++ +TSM+       HG++A
Sbjct: 432 AEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDA 491

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL 459
           I+LF EM++ G+ PD  V  ++L AC+     ++G +    +       +      +V  
Sbjct: 492 IKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYT 551

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
             + G +++A      +P K   S W  ++G   +H     GK    R LD+   M+   
Sbjct: 552 YAKCGSIEDADLAFSGLPDKGVVS-WSAMIGGLAQH---GHGK----RALDVFRRMVDER 603

Query: 520 IILSNI 525
           I  ++I
Sbjct: 604 IAPNHI 609



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 136/480 (28%), Positives = 229/480 (47%), Gaps = 42/480 (8%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
           +L+  Y    L   AR +FDE P+   VSW+ ++  Y++     +A   F  M    V  
Sbjct: 42  HLLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRC 101

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           N F L  VLK C     L     VH +A+  GL G I+V N+L+ +Y      +D AR V
Sbjct: 102 NEFALPIVLK-CAPDAGL--GVQVHAVAVSTGLSGDIFVANALVAMYGGFGF-VDEARRV 157

Query: 171 FND-MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           F++  + +N VSW  +++ +  +      + +F EM+  GV  N + FS  V AC  +  
Sbjct: 158 FDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRD 217

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           +  G+ +HA V++ G+  ++   N+++DMY +   +  A   F ++ + D+++WN  I+G
Sbjct: 218 LEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISG 277

Query: 290 YEKSGSSE-CLNMFSKMKSERFSPNCFTFTSII--AACATLAALSCGQQVHAGIVRRGLD 346
               G  +  L +  +MKS    PN FT +SI+   A A   A + G+Q+H  +++   D
Sbjct: 278 CVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACAD 337

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            +  +  AL+DMYAK G + D++K+F  +  +DL+ W +++ G    G   E++ LF  M
Sbjct: 338 SDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRM 397

Query: 407 VKSGVRPDRIVFMAVLTACS-----------HA---------------GLVDE-----GL 435
            K G   +R    AVL + +           HA               GL+D       L
Sbjct: 398 RKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCL 457

Query: 436 KYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK---PDESVWGPLLGAC 492
           +Y   + + + + N   +  ++  L +    ++A +L   M  K   PD  V   LL AC
Sbjct: 458 RYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNAC 517



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 108/383 (28%), Positives = 197/383 (51%), Gaps = 11/383 (2%)

Query: 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFND 173
           ++S +L      +SL   A +H   +K GL  +    N L+  Y+ C +   +AR VF++
Sbjct: 6   SISPLLTRYAATQSLFLGAHIHAHLLKSGLLHAF--RNHLLSFYSKCRLP-GSARRVFDE 62

Query: 174 MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG 233
                 VSW++L+T Y+++      L  F+ M   GV  N ++  I ++     G    G
Sbjct: 63  TPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAPDAG---LG 119

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLITWNTIIAGYEK 292
             +HA  +  G   ++ V N+++ MY  F  + +A + FDE   +++ ++WN +++ + K
Sbjct: 120 VQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVK 179

Query: 293 SGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLAL 351
           +   S+ + +F +M      PN F F+ ++ AC     L  G++VHA +VR G D ++  
Sbjct: 180 NDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFT 239

Query: 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411
           ANAL+DMY+K G+I  +  +F ++   D+V+W + + G   HGH + A+EL  +M  SG+
Sbjct: 240 ANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGL 299

Query: 412 RPDRIVFMAVLTACSHAGLVDEGL--KYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
            P+     ++L AC+ AG     L  +    M     + +  I   +VD+  + G + +A
Sbjct: 300 VPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDA 359

Query: 470 YELIKSMPFKPDESVWGPLLGAC 492
            ++ + +P K D  +W  L+  C
Sbjct: 360 RKVFEWIPRK-DLLLWNALISGC 381



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 120/247 (48%), Gaps = 5/247 (2%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S +   LI SY+    +  A  +F+E    +++++T MI   +  +    A  +F+EM+R
Sbjct: 441 SHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLR 500

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             + P+ F LSS+L AC  + +      VH   IK      ++  N+L+  YA C  S++
Sbjct: 501 KGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCG-SIE 559

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +A L F+ +  K  VSW+ +I G A  G+G   L VF+ M+ E +  N  + +  + AC 
Sbjct: 560 DADLAFSGLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACN 619

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPV--MNSILDMYCRFDCLSDANQYFDEMT-EKDLIT 282
             G V   K   ++ +K  FG +      + ++D+  R   L DA +  + M  E +   
Sbjct: 620 HAGLVDEAKGYFSS-MKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAV 678

Query: 283 WNTIIAG 289
           W  ++A 
Sbjct: 679 WGALLAA 685


>gi|242051555|ref|XP_002454923.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
 gi|241926898|gb|EES00043.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
          Length = 741

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/563 (35%), Positives = 323/563 (57%), Gaps = 7/563 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            ++T L+  Y   G I +AR +FD+MP R+ VSW  M++GY +  C  +A+ +F  M++ 
Sbjct: 159 FVSTALLNMYCKLGAISDARRVFDQMPHRNAVSWAAMVSGYATGKCSEEAFELFRLMLQE 218

Query: 107 -EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISM 164
             +  N F  ++VL A      L     +HG+ +K+GL G + VENSL+ +YA   C  M
Sbjct: 219 CPLEKNEFVATAVLSAVSVPLGLLIGVQLHGLVLKDGLVGFVSVENSLVTMYAKAEC--M 276

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           D A  VF   K +N ++W+ +ITGYA +G       +F +M   G     ++F   + A 
Sbjct: 277 DAAMAVFGSSKERNSITWSAMITGYAQNGEADCAATMFLQMHSAGFSPTEFTFVGILNAS 336

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE-KDLITW 283
           +  G +  GK  H  ++K GF   + V ++++DMY +  C  DA   F ++ +  D++ W
Sbjct: 337 SDMGALVVGKQAHGLMVKLGFERQVYVKSALVDMYAKCGCTGDAKDGFHQLYDVDDVVIW 396

Query: 284 NTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
             +I G+ ++G   E L ++S+M  E   P+  T TS++ ACA LAAL  G+Q+HA I++
Sbjct: 397 TAMITGHVQNGEHEEALMLYSRMDKEGVMPSYLTVTSVLRACACLAALEPGKQLHAQILK 456

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            G     ++  AL  MY+KCGN+ DS  +F  M DRD+++W S++ G+  HG G++A++L
Sbjct: 457 CGFGLGGSVGTALSTMYSKCGNLEDSMVVFRRMPDRDIISWNSIISGFSQHGRGRDALDL 516

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLG 461
           F+EM   G+ PD I F+ VL ACSH GLVD G  YF++M+ DY + P  + Y C+VD+L 
Sbjct: 517 FEEMKLEGIAPDHITFINVLCACSHMGLVDRGWFYFRAMSKDYGLIPKLDHYACIVDILS 576

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           RAG++KEA + I+S+       +W  +LGAC+  R  ++G  A  ++++L       YI+
Sbjct: 577 RAGQLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGEQLMELGTEDSSAYIL 636

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGV 581
           LSNIYAA+ KW +  + R +MR  G  K+ G SW+E+ ++V  F+  ++     + +   
Sbjct: 637 LSNIYAAQRKWNDVERVRHLMRLRGVSKDPGCSWVELNNQVNVFVVGEQQHPEAEKINVE 696

Query: 582 LEMLIRHMNETAYEPDIDCLIHD 604
           L  L +HM +  Y      L  D
Sbjct: 697 LIRLAKHMKDEGYRQTYKFLFDD 719



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 169/366 (46%), Gaps = 11/366 (3%)

Query: 134 VHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL-VFNDMK--WKNDVSWTTLITGYA 190
           +HG A+K G      V NSL+  Y +    +  A   VF D+    ++  SW +L+   +
Sbjct: 36  LHGWALKSGAASHTPVSNSLITFYCSPPRPLLGAAFAVFADIPAGLRDVASWNSLLNPLS 95

Query: 191 HSGNGYGGLGVFKEML--LEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGS- 247
                   L  F+ M+   + V   P+SF+    A A     S G + HA   K    S 
Sbjct: 96  RH-QPLAALSHFRSMMSSTDAVLPTPHSFAAVFTAAARVPSASAGAVAHAFACKLPSSSG 154

Query: 248 --NLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSK 304
             N+ V  ++L+MYC+   +SDA + FD+M  ++ ++W  +++GY     S E   +F  
Sbjct: 155 SNNVFVSTALLNMYCKLGAISDARRVFDQMPHRNAVSWAAMVSGYATGKCSEEAFELFRL 214

Query: 305 MKSE-RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG 363
           M  E     N F  T++++A +    L  G Q+H  +++ GL G +++ N+L+ MYAK  
Sbjct: 215 MLQECPLEKNEFVATAVLSAVSVPLGLLIGVQLHGLVLKDGLVGFVSVENSLVTMYAKAE 274

Query: 364 NISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLT 423
            +  +  +F    +R+ +TW++M+ GY  +G    A  +F +M  +G  P    F+ +L 
Sbjct: 275 CMDAAMAVFGSSKERNSITWSAMITGYAQNGEADCAATMFLQMHSAGFSPTEFTFVGILN 334

Query: 424 ACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDES 483
           A S  G +  G +    M          +   +VD+  + G   +A +    +    D  
Sbjct: 335 ASSDMGALVVGKQAHGLMVKLGFERQVYVKSALVDMYAKCGCTGDAKDGFHQLYDVDDVV 394

Query: 484 VWGPLL 489
           +W  ++
Sbjct: 395 IWTAMI 400



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 101/204 (49%), Gaps = 10/204 (4%)

Query: 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCR--FDCLSDANQYFDEMTE--KDLITWNTIIA 288
           G  +H   +K G  S+ PV NS++  YC      L  A   F ++    +D+ +WN+++ 
Sbjct: 33  GDALHGWALKSGAASHTPVSNSLITFYCSPPRPLLGAAFAVFADIPAGLRDVASWNSLLN 92

Query: 289 GYEKSGSSECLNMFSKMKS--ERFSPNCFTFTSIIAACATLAALSCGQQVHA---GIVRR 343
              +      L+ F  M S  +   P   +F ++  A A + + S G   HA    +   
Sbjct: 93  PLSRHQPLAALSHFRSMMSSTDAVLPTPHSFAAVFTAAARVPSASAGAVAHAFACKLPSS 152

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
               N+ ++ AL++MY K G ISD++++F +M  R+ V+W +M+ GY      +EA ELF
Sbjct: 153 SGSNNVFVSTALLNMYCKLGAISDARRVFDQMPHRNAVSWAAMVSGYATGKCSEEAFELF 212

Query: 404 DEMVKS-GVRPDRIVFMAVLTACS 426
             M++   +  +  V  AVL+A S
Sbjct: 213 RLMLQECPLEKNEFVATAVLSAVS 236


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/536 (36%), Positives = 311/536 (58%), Gaps = 23/536 (4%)

Query: 63  EEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKAC 122
           E A  LFD++ +RDV+SW  MI+GY S     +   ++ +M+   ++ +  T+ SVL  C
Sbjct: 202 ESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGC 261

Query: 123 KGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSW 182
               +LS    VH +AIK   E  I   N+L+D+Y+ C   +D A  VF  M  +N VSW
Sbjct: 262 ANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCG-DLDGALRVFEKMGERNVVSW 320

Query: 183 TTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIK 242
           T++I GY   G   G + + ++M  EGV+++  + +  + ACA +G +  GK +H  +  
Sbjct: 321 TSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKA 380

Query: 243 HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMF 302
           +   SNL V N+++DMY +   +  AN  F  M  KD+I+WNT+I               
Sbjct: 381 NNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIG-------------- 426

Query: 303 SKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362
                    P+  T   ++ ACA+L+AL  G+++H  I+R G   +  +ANAL+D+Y KC
Sbjct: 427 ------ELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKC 480

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
           G +  ++ +F  +  +DLV+WT M+ GYG HG+G EAI  F+EM  +G+ PD + F+++L
Sbjct: 481 GVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISIL 540

Query: 423 TACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481
            ACSH+GL+++G ++F  M ND+N+ P  E Y C+VDLL R G + +AYE ++++P  PD
Sbjct: 541 YACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPD 600

Query: 482 ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKI 541
            ++WG LL  C+ +    L +  A RV +L+P   G Y++L+NIYA   KWEE  + R+ 
Sbjct: 601 ATIWGALLCGCRNYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRLREK 660

Query: 542 MRGMGSKKEVGMSWIEVRDKVCGFIA-NDKMGSHTQYVYGVLEMLIRHMNETAYEP 596
           +   G +K  G SWIE++ KV  F++ N+    H++ +  +L+ + R M E  + P
Sbjct: 661 IGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFP 716



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 176/358 (49%), Gaps = 51/358 (14%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
            +  L+  Y   G ++ A  +F++M ER+VVSWT MIAGYT     + A  +  +M +  
Sbjct: 288 FSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEG 347

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V  +   ++S+L AC    SL N   VH       +E +++V N+LMD+YA C  SM+ A
Sbjct: 348 VKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCG-SMEAA 406

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA--VRACA 225
             VF+ M  K+ +SW T+I                        E+ P S ++A  + ACA
Sbjct: 407 NSVFSTMVVKDIISWNTMIG-----------------------ELKPDSRTMACVLPACA 443

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           S   +  GK IH  ++++G+ S+  V N+++D+Y +   L  A   FD +  KDL++W  
Sbjct: 444 SLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTV 503

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +IAGY   G  +E +  F++M+     P+  +F SI+ AC+           H+G++ +G
Sbjct: 504 MIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACS-----------HSGLLEQG 552

Query: 345 ------------LDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIG 389
                       ++  L     ++D+ ++ GN+S + +    +    D   W +++ G
Sbjct: 553 WRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCG 610



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 158/358 (44%), Gaps = 67/358 (18%)

Query: 211 EMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQ 270
           E+   ++   ++ CA     + GK +H+ +  +  G +  +   ++  Y     L +  +
Sbjct: 96  ELETKTYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRR 155

Query: 271 YFDEMTEKDLITWNTIIAGYEKSG---SSECL------------------NMFSKM---- 305
            FD M +K++  WN +++ Y K G    S CL                   +F K+    
Sbjct: 156 VFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRD 215

Query: 306 ---------------KSER------------FSPNCFTFTSIIAACATLAALSCGQQVHA 338
                           +ER               +  T  S++  CA    LS G+ VH+
Sbjct: 216 VISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHS 275

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
             ++   +  +  +N L+DMY+KCG++  + ++F +M +R++V+WTSM+ GY   G    
Sbjct: 276 LAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDG 335

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDY----NVNPNKEIYG 454
           AI+L  +M K GV+ D +   ++L AC+ +G +D G    K ++DY    N+  N  +  
Sbjct: 336 AIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNG----KDVHDYIKANNMESNLFVCN 391

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR------LPNLGKLAAL 506
            ++D+  + G ++ A  +  +M  K D   W  ++G  K         LP    L+AL
Sbjct: 392 ALMDMYAKCGSMEAANSVFSTMVVK-DIISWNTMIGELKPDSRTMACVLPACASLSAL 448


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/565 (34%), Positives = 325/565 (57%), Gaps = 3/565 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR- 105
           +L T +I  Y   G   ++R +FD++  +++  W  +++ YT       A ++F E++  
Sbjct: 142 VLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISV 201

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
            E  P+ FTL  V+KAC G+  L    ++HGMA K  L   ++V N+L+ +Y  C +  +
Sbjct: 202 TEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEE 261

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
             + VF+ M  K   SW  L+ GYA + +    L ++ +M   G++ + ++    + AC+
Sbjct: 262 AVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACS 321

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               + +G+ IH   +++G   +  +  S+L +Y        A   FD M  + L++WN 
Sbjct: 322 RMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNV 381

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +IAGY ++G   E +N+F +M S+   P       +  AC+ L+AL  G+++H   ++  
Sbjct: 382 MIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAH 441

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           L  ++ +++++IDMYAK G I  SQ+IF  + ++D+ +W  ++ GYG HG GKEA+ELF+
Sbjct: 442 LTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFE 501

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRA 463
           +M++ G++PD   F  +L ACSHAGLV++GL+YF  M N +N+ P  E Y CVVD+LGRA
Sbjct: 502 KMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRA 561

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           GR+ +A  LI+ MP  PD  +W  LL +C+ H    LG+  A ++L+L+P     Y+++S
Sbjct: 562 GRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLIS 621

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           N++A  GKW++  + R  M+ +G +K+ G SWIEV  KV  F+  D+M    + V     
Sbjct: 622 NLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWR 681

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGE 608
            L   ++   Y PD   ++HDLE E
Sbjct: 682 RLEVKISSIGYTPDTGSVLHDLEEE 706



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 84/174 (48%), Gaps = 6/174 (3%)

Query: 320 IIAACATLAALSCGQQVHAGI-VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR 378
           ++ AC     +  G+++H  +        +  L   +I MY+ CG+ SDS+ +F ++  +
Sbjct: 111 LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 170

Query: 379 DLVTWTSMMIGYGAHGHGKEAIELFDEMVK-SGVRPDRIVFMAVLTACSHAGLVDEGLKY 437
           +L  W +++  Y  +   ++A+ +F E++  +  +PD      V+ AC  AGL+D GL  
Sbjct: 171 NLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKAC--AGLLDLGLGQ 228

Query: 438 FKSMNDYNVNPNKEIY--GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
                   ++   +++    ++ + G+ G V+EA + +  +      S W  LL
Sbjct: 229 IIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALL 282


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/569 (37%), Positives = 325/569 (57%), Gaps = 39/569 (6%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           + PS L   L++SY   G     R +FDEM +R+VV + VMI  Y + + ++    VF E
Sbjct: 51  QNPS-LGIKLMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFRE 109

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-C 161
           MV     P+ +T   VLKAC   ++L    L+HG  +K GL+ +++V N L+ +Y  C C
Sbjct: 110 MVNGGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGC 169

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
           +    AR VF++M WK+ VSW +++ GYAH+      L + +EM   G + +  + +  +
Sbjct: 170 LF--EARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASLM 227

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
            A A+T                    N+  +  I                F  +  K+LI
Sbjct: 228 PAVANTS-----------------SENVLYVEKI----------------FVNLERKNLI 254

Query: 282 TWNTIIAGYEK-SGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           +WN +I  Y K S  ++ ++++ +M+  R  P+  TF S++ AC  L+AL  G+++H  +
Sbjct: 255 SWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYV 314

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
            ++ L  NL L N+LIDMYA+CG + D++++F  M  RD+ +WTS++  YG  G G  A+
Sbjct: 315 EKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAV 374

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDL 459
            LF EM+ SG  PD I F+A+L+ACSH+GL+DEG  YFK M +DY + P  E Y C+VDL
Sbjct: 375 ALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDL 434

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
           LGRAGRV EAY +IK MP +P+E VW  LL +C+     ++G LAA  +L L P   G Y
Sbjct: 435 LGRAGRVDEAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADNLLQLAPEQSGYY 494

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVY 579
           ++LSNIYA  G+W+E  + R +M+    +K  G+S +E+ ++V  F+A D     ++ +Y
Sbjct: 495 VLLSNIYAKAGRWKEVTEIRSVMKRKKIRKTPGISNVELNNQVHTFLAGDTSHPQSKEIY 554

Query: 580 GVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
             L +L+  M E  Y P+ D  +HD+E E
Sbjct: 555 EELGVLVAKMKELGYVPETDSALHDVEEE 583



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 1/158 (0%)

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
           +++H  I       N +L   L+  YA CG    ++K+F EMSDR++V +  M+  Y  +
Sbjct: 38  KKLHTMIFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNN 97

Query: 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIY 453
               + + +F EMV  G RPD   +  VL ACS +  +  GL     +    ++ N  + 
Sbjct: 98  HRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVG 157

Query: 454 GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
             ++ + G+ G + EA  +   M +K D   W  ++  
Sbjct: 158 NGLIAMYGKCGCLFEARRVFDEMIWK-DVVSWNSMVAG 194


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 226/615 (36%), Positives = 336/615 (54%), Gaps = 54/615 (8%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPER---DVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
            +   L+  Y   G  E AR +FDEM ER   D+VSW  ++A Y       +A  +F  M
Sbjct: 162 FVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERM 221

Query: 104 VRN-EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
             +  + P+A +L +VL AC  + + S    VHG A++ GL   ++V N+++D+YA C +
Sbjct: 222 TEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGM 281

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGY--------------------------------- 189
            M+ A  VF  MK K+ VSW  ++TGY                                 
Sbjct: 282 -MEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIA 340

Query: 190 --AHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIK----- 242
             A  G G+  L VF++M L G E N  +    +  CA  G +  GK  H   IK     
Sbjct: 341 GYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNL 400

Query: 243 --HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD--LITWNTIIAGYEKSG-SSE 297
             +  G +L V+N+++DMY +      A   FD +  KD  ++TW  +I G  + G ++E
Sbjct: 401 DENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANE 460

Query: 298 CLNMFSKM-KSERFS-PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN-LALANA 354
            L +FS+M + + F  PN FT +  + ACA L AL  G+Q+HA ++R   +   L +AN 
Sbjct: 461 ALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANC 520

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
           LIDMY+K G++  ++ +F  M  R+ V+WTS+M GYG HG G+EA+++F EM K G+ PD
Sbjct: 521 LIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPD 580

Query: 415 RIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELI 473
            + F+ VL ACSH+G+VD+G+ YF  MN D+ V P  E Y C+VDLL RAGR+ EA ELI
Sbjct: 581 GVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELI 640

Query: 474 KSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWE 533
           + MP KP  +VW  LL AC+ +    LG+ AA ++L+L+    G+Y +LSNIYA    W+
Sbjct: 641 RGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWK 700

Query: 534 EFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETA 593
           + A+ R +M+  G KK  G SW++ R     F A D     +Q +Y +L  L++ +    
Sbjct: 701 DVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALG 760

Query: 594 YEPDIDCLIHDLEGE 608
           Y PD    +HD++ E
Sbjct: 761 YVPDNRFALHDVDDE 775



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 121/456 (26%), Positives = 212/456 (46%), Gaps = 61/456 (13%)

Query: 77  VVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHG 136
           V  W  +I              ++  M R    P+ +T   VLKAC  + S    A VH 
Sbjct: 91  VFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHA 150

Query: 137 MAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK---NDVSWTTLITGYAHSG 193
           +    G E +++V N L+ +Y  C  + +NAR VF++M+ +   + VSW +++  Y   G
Sbjct: 151 VVFASGFEWNVFVGNGLVSMYGRCG-AWENARQVFDEMRERGVGDLVSWNSIVAAYMQGG 209

Query: 194 NGYGGLGVFKEMLLE-GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVM 252
           +    + +F+ M  + G+  +  S    + ACAS G  S GK +H   ++ G   ++ V 
Sbjct: 210 DSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVG 269

Query: 253 NSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERF- 310
           N+++DMY +   + +AN+ F+ M  KD+++WN ++ GY + G   + L +F K++ E+  
Sbjct: 270 NAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIE 329

Query: 311 ----------------------------------SPNCFTFTSIIAACATLAALSCGQQV 336
                                              PN  T  S+++ CA    L  G++ 
Sbjct: 330 LNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKET 389

Query: 337 HAGIVR--RGLDGN-----LALANALIDMYAKCGNISDSQKIFSEM--SDRDLVTWTSMM 387
           H   ++    LD N     L + NALIDMY+KC +   ++ +F  +   DR +VTWT ++
Sbjct: 390 HCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLI 449

Query: 388 IGYGAHGHGKEAIELFDEMVKSG--VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYN 445
            G   HG   EA+ELF +M++    V P+       L AC+  G     L++ + ++ Y 
Sbjct: 450 GGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLG----ALRFGRQIHAYV 505

Query: 446 VNPNKE-----IYGCVVDLLGRAGRVKEAYELIKSM 476
           +    E     +  C++D+  ++G V  A  +  +M
Sbjct: 506 LRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNM 541



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 105/346 (30%), Positives = 174/346 (50%), Gaps = 24/346 (6%)

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEG------SIYVE-NSLMDVYATCCISMDNAR 168
           S++   CK   SL++A L+H   + +GL        S+Y+  NS     +       ++ 
Sbjct: 33  STLFHQCK---SLASAELIHQQLLVQGLPHDPTHIISMYLTFNSPAKALSVLRRLHPSSH 89

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            VF    W     W  LI    H G     L +++ M   G   + Y+F   ++AC    
Sbjct: 90  TVF----W-----WNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIP 140

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK---DLITWNT 285
               G  +HA V   GF  N+ V N ++ MY R     +A Q FDEM E+   DL++WN+
Sbjct: 141 SFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNS 200

Query: 286 IIAGYEKSGSS-ECLNMFSKMKSER-FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           I+A Y + G S   + MF +M  +    P+  +  +++ ACA++ A S G+QVH   +R 
Sbjct: 201 IVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRS 260

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           GL  ++ + NA++DMYAKCG + ++ K+F  M  +D+V+W +M+ GY   G   +A+ LF
Sbjct: 261 GLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLF 320

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN 449
           +++ +  +  + + + AV+   +  GL  E L  F+ M      PN
Sbjct: 321 EKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPN 366



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 86/270 (31%), Positives = 133/270 (49%), Gaps = 27/270 (10%)

Query: 14  HCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATN-LIKSYFDEGLIEEARTLFDEM 72
           HCH I  I+            ++DP     G  ++  N LI  Y      + AR +FD +
Sbjct: 390 HCHAIKWILNLD---------ENDP-----GDDLMVINALIDMYSKCKSPKAARAMFDLI 435

Query: 73  PERD--VVSWTVMIAGYTSFNCHNQAWTVFVEMVR--NEVNPNAFTLSSVLKACKGMKSL 128
           P +D  VV+WTV+I G       N+A  +F +M++  N V PNAFT+S  L AC  + +L
Sbjct: 436 PPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGAL 495

Query: 129 SNAALVHGMAIKEGLEGS-IYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLIT 187
                +H   ++   E + ++V N L+D+Y+     +D AR+VF++M  +N VSWT+L+T
Sbjct: 496 RFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSG-DVDAARVVFDNMHQRNGVSWTSLMT 554

Query: 188 GYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGS 247
           GY   G G   L +F EM   G+  +  +F + + AC+ +G V  G         +G   
Sbjct: 555 GYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQG-----INYFNGMNK 609

Query: 248 NLPVMNSILDMYCRFDCLSDANQYFDEMTE 277
           +  V+       C  D LS A +  DE  E
Sbjct: 610 DFGVVPGAEHYACMVDLLSRAGR-LDEAME 638


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/569 (36%), Positives = 337/569 (59%), Gaps = 4/569 (0%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           +  + + T LI +Y   G ++ AR +FD +  +D+VSWT M+A Y    CH  +  +F +
Sbjct: 136 QADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQ 195

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M      PN FT+S+ LK+C G+++      VHG A+K   +  +YV  +L+++Y T   
Sbjct: 196 MRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELY-TKSG 254

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEM-NPYSFSIAV 221
            +  A+  F +M   + + W+ +I+ YA S      L +F  M    V + N ++F+  +
Sbjct: 255 EIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVL 314

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
           +ACAS   ++ G  IH+ V+K G  SN+ V N+++D+Y +   + ++ + F   TEK+ +
Sbjct: 315 QACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEV 374

Query: 282 TWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
            WNTII GY + G  E  LN+FS M      P   T++S++ A A+L AL  G+Q+H+  
Sbjct: 375 AWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLT 434

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           ++   + +  +AN+LIDMYAKCG I D++  F +M  +D V+W +++ GY  HG G EA+
Sbjct: 435 IKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEAL 494

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDL 459
            LFD M +S  +P+++ F+ VL+ACS+AGL+D+G  +FKSM  DY + P  E Y C+V L
Sbjct: 495 NLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWL 554

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
           LGR+G+  EA +LI  +PF+P   VW  LLGAC  H+  +LGK+ A RVL+++P    T+
Sbjct: 555 LGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEPQDDATH 614

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVY 579
           ++LSN+YA   +W+  A  RK M+    KKE G+SW+E +  V  F   D    + + ++
Sbjct: 615 VLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFTVGDTSHPNIKLIF 674

Query: 580 GVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
            +LE L +   +  Y PD   ++ D+E +
Sbjct: 675 AMLEWLYKKTRDAGYVPDCSVVLLDVEDD 703



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 147/503 (29%), Positives = 265/503 (52%), Gaps = 14/503 (2%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+ +Y   G +E+A  LFDEMP  + VS+  +  G++  +   +A  + + + R     N
Sbjct: 44  LLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVN 103

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
            F  +++LK    M        VH    K G +   +V  +L+D Y+ C  ++D AR VF
Sbjct: 104 QFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCG-NVDAARQVF 162

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           + + +K+ VSWT ++  YA +      L +F +M + G   N ++ S A+++C       
Sbjct: 163 DGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFK 222

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            GK +H   +K  +  +L V  ++L++Y +   +++A Q+F+EM + DLI W+ +I+ Y 
Sbjct: 223 VGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYA 282

Query: 292 KSG-SSECLNMFSKMK-SERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
           +S  S E L +F +M+ S    PN FTF S++ ACA+L  L+ G Q+H+ +++ GLD N+
Sbjct: 283 QSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNV 342

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
            ++NAL+D+YAKCG I +S K+F+  ++++ V W ++++GY   G G++A+ LF  M+  
Sbjct: 343 FVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGL 402

Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
            ++P  + + +VL A +    ++ G +          N +  +   ++D+  + GR+ +A
Sbjct: 403 DIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDA 462

Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDL------KPNMMGTYIILS 523
                 M  K DE  W  L+     H L     + AL + D+      KPN +    +LS
Sbjct: 463 RLTFDKMD-KQDEVSWNALICGYSIHGL----GMEALNLFDMMQQSNSKPNKLTFVGVLS 517

Query: 524 NIYAAEGKWEEFAKFRKIMRGMG 546
               A    +  A F+ +++  G
Sbjct: 518 ACSNAGLLDKGRAHFKSMLQDYG 540



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 133/262 (50%), Gaps = 10/262 (3%)

Query: 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEK 292
           GK +H  ++KHG   +L   N +L+ Y  F  L DA++ FDEM   + +++ T+  G+ +
Sbjct: 22  GKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSR 81

Query: 293 SGSSECLNMFSKMKS-ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLAL 351
           S   +           E +  N F FT+++    ++        VHA + + G   +  +
Sbjct: 82  SHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFV 141

Query: 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411
             ALID Y+ CGN+  ++++F  +  +D+V+WT M+  Y  +   ++++ LF +M   G 
Sbjct: 142 GTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGY 201

Query: 412 RPDRIVFMAVLTACSHAGLVDEGLKYFKSMND--YNVNPNKEIYG--CVVDLLGRAGRVK 467
           RP+     A L +C+  GL  E  K  KS++     V  ++++Y    +++L  ++G + 
Sbjct: 202 RPNNFTISAALKSCN--GL--EAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIA 257

Query: 468 EAYELIKSMPFKPDESVWGPLL 489
           EA +  + MP K D   W  ++
Sbjct: 258 EAQQFFEEMP-KDDLIPWSLMI 278


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 217/626 (34%), Positives = 340/626 (54%), Gaps = 69/626 (11%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
            ++ +Y   G ++     FD++P+RD VSWT MI GY +   +++A  V  +MV+  + P
Sbjct: 85  TVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEP 144

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC---------- 160
             FTL++VL +    + +     VH   +K GL G++ V NSL+++YA C          
Sbjct: 145 TQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVF 204

Query: 161 --------------------CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLG 200
                                  MD A   F  M  ++ V+W ++I+G+   G     L 
Sbjct: 205 DRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALD 264

Query: 201 VFKEMLLEGVEMNPYSFSIA--VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDM 258
           +F +ML + + ++P  F++A  + ACA+   +  GK IH+ ++  GF  +  V+N+++ M
Sbjct: 265 IFSKMLRDSL-LSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISM 323

Query: 259 YCR------------------------------FDCLSDANQ---YFDEMTEKDLITWNT 285
           Y R                              +  L D NQ    F  + ++D++ W  
Sbjct: 324 YSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTA 383

Query: 286 IIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I GYE+ GS  E +N+F  M      PN +T  ++++  ++LA+LS G+Q+H   V+ G
Sbjct: 384 MIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSG 443

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEAIELF 403
              +++++NALI MYAK GNI+ + + F  +  +RD V+WTSM+I    HGH +EA+ELF
Sbjct: 444 EIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELF 503

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYN-VNPNKEIYGCVVDLLGR 462
           + M+  G+RPD I ++ V +AC+HAGLV++G +YF  M D + + P    Y C+VDL GR
Sbjct: 504 ETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGR 563

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AG ++EA E I+ MP +PD   WG LL AC+ H+  +LGK+AA R+L L+P   G Y  L
Sbjct: 564 AGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSAL 623

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           +N+Y+A GKWEE AK RK M+    KKE G SWIEV+ KV  F   D        +Y  +
Sbjct: 624 ANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTM 683

Query: 583 EMLIRHMNETAYEPDIDCLIHDLEGE 608
           + +   + +  Y PD   ++HDLE E
Sbjct: 684 KKIWDEIKKMGYVPDTASVLHDLEEE 709



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 151/571 (26%), Positives = 255/571 (44%), Gaps = 143/571 (25%)

Query: 110 PNAFTLSSVLKACKGM--KSLS------NAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
           P   +LS++L+ C  +  KS++       A LVH   IK GL  S+Y+ N+LM+VY+   
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTG 63

Query: 162 ISMDNARLVFNDM------KW-------------------------KNDVSWTTLITGYA 190
            ++ +AR +F++M       W                         ++ VSWTT+I GY 
Sbjct: 64  YAL-HARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYK 122

Query: 191 HSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLP 250
           + G  +  + V  +M+ EG+E   ++ +  + + A+T  +  GK +H+ ++K G   N+ 
Sbjct: 123 NIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVS 182

Query: 251 VMNSILDMYCR----------FD--CLSDANQY-------------------FDEMTEKD 279
           V NS+L+MY +          FD   + D + +                   F++M E+D
Sbjct: 183 VSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERD 242

Query: 280 LITWNTIIAGYEKSGSS-ECLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
           ++TWN++I+G+ + G     L++FSKM +    SP+ FT  S+++ACA L  L  G+Q+H
Sbjct: 243 IVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIH 302

Query: 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQK--------------------------- 370
           + IV  G D +  + NALI MY++CG +  +++                           
Sbjct: 303 SHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGD 362

Query: 371 ------IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTA 424
                 IF  + DRD+V WT+M++GY  HG   EAI LF  MV  G RP+     A+L+ 
Sbjct: 363 MNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSV 422

Query: 425 CS-----------HAGLVDEG------------LKYFKSMNDYNVNPNKEIYGCVVDL-- 459
            S           H   V  G              Y K+ N  + +   ++  C  D   
Sbjct: 423 ASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVS 482

Query: 460 -------LGRAGRVKEAYELIKSM---PFKPDESVWGPLLGACKEHRLPNLGK--LAALR 507
                  L + G  +EA EL ++M     +PD   +  +  AC    L N G+     ++
Sbjct: 483 WTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMK 542

Query: 508 VLDLKPNMMGTYIILSNIYAAEGKWEEFAKF 538
            +D     +  Y  + +++   G  +E  +F
Sbjct: 543 DVDKIIPTLSHYACMVDLFGRAGLLQEAQEF 573



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 132/245 (53%), Gaps = 8/245 (3%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T L+  Y   G + +A+ +F  + +RDVV+WT MI GY     + +A  +F  MV     
Sbjct: 351 TALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQR 410

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           PN++TL+++L     + SLS+   +HG A+K G   S+ V N+L+ +YA    ++ +A  
Sbjct: 411 PNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAG-NITSASR 469

Query: 170 VFNDMKWKND-VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            F+ ++ + D VSWT++I   A  G+    L +F+ ML+EG+  +  ++     AC   G
Sbjct: 470 AFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAG 529

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNS---ILDMYCRFDCLSDANQYFDEM-TEKDLITWN 284
            V+ G+     +        +P ++    ++D++ R   L +A ++ ++M  E D++TW 
Sbjct: 530 LVNQGRQYFDMM--KDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWG 587

Query: 285 TIIAG 289
           ++++ 
Sbjct: 588 SLLSA 592


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/497 (38%), Positives = 304/497 (61%), Gaps = 7/497 (1%)

Query: 117 SVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNARLVFNDMK 175
           SVL  C    ++     VH   IK   E  +Y+   L+ +Y  C C+   +AR V ++M 
Sbjct: 482 SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLG--DARRVLDEMP 539

Query: 176 WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKL 235
            +N VSWT +I+GY+  G     L +F EML+ G   N ++F+  + +C S+     G+ 
Sbjct: 540 ERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQ 599

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG- 294
           IH+ VIK  F S++ V +S+LDMY +   + +A + FD + E+D+++   II+GY + G 
Sbjct: 600 IHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGL 659

Query: 295 SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
             E L++F +++ E    N  T+ S++ A + LAAL  G+QVH+ ++R  L   + L N+
Sbjct: 660 DEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNS 719

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG-VRP 413
           LIDMY+KCG+++ S++IF  M +R +++W +M++GY  HG G+EA+ELF  M +   V+P
Sbjct: 720 LIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKP 779

Query: 414 DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYN--VNPNKEIYGCVVDLLGRAGRVKEAYE 471
           D + F+AVL+ CSH G+ D GL+ F  M +      P  E YGCVVDL GRAGRV+EA+E
Sbjct: 780 DSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFE 839

Query: 472 LIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK 531
            IK MPF+P  ++WG LLGAC+ H+  ++G+  A R+L+++    G Y+ILSN+YA+ G+
Sbjct: 840 FIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGR 899

Query: 532 WEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNE 591
           W++    R++M+     KE G SWIE+   +  F A+D+     + V+  +  L   + E
Sbjct: 900 WDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKE 959

Query: 592 TAYEPDIDCLIHDLEGE 608
             Y P++ C+++D++ E
Sbjct: 960 AGYVPELSCVLYDVDDE 976



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 101/348 (29%), Positives = 184/348 (52%), Gaps = 6/348 (1%)

Query: 45  PSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
           P  L T LI  Y     + +AR + DEMPER+VVSWT MI+GY+     ++A  +FVEM+
Sbjct: 511 PVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEML 570

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
            +   PN FT ++VL +C           +H + IK   E  I+V +SL+D+YA     +
Sbjct: 571 MSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAG-KI 629

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
             AR VF+ +  ++ VS T +I+GYA  G     L +F+ +  EG+  N  +++  + A 
Sbjct: 630 CEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTAL 689

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           +    +  G+ +H+ V++      + + NS++DMY +   L+ + + FD M E+ +I+WN
Sbjct: 690 SGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWN 749

Query: 285 TIIAGYEKSG-SSECLNMFSKMKSE-RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
            ++ GY K G   E + +F  MK E +  P+  TF ++++ C+       G ++   +V 
Sbjct: 750 AMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVN 809

Query: 343 R--GLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMM 387
           +  G +  +     ++D++ + G + ++ +   +M  +     W S++
Sbjct: 810 QKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLL 857



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 165/295 (55%), Gaps = 2/295 (0%)

Query: 204 EMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFD 263
           EM ++G+E+    +   +  C S   +  G+ +HA +IK  +   + +   ++ +Y +  
Sbjct: 467 EMGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCR 526

Query: 264 CLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIA 322
           CL DA +  DEM E+++++W  +I+GY + G +SE L++F +M     +PN FTF +++ 
Sbjct: 527 CLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLT 586

Query: 323 ACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVT 382
           +C + +    G+Q+H+ +++   + ++ + ++L+DMYAK G I +++++F  + +RD+V+
Sbjct: 587 SCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVS 646

Query: 383 WTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN 442
            T+++ GY   G  +EA++LF  + + G+R + + + +VLTA S    +D G +    + 
Sbjct: 647 CTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVL 706

Query: 443 DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
              +     +   ++D+  + G +  +  +  SMP +   S W  +L    +H L
Sbjct: 707 RAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVIS-WNAMLVGYSKHGL 760


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/565 (35%), Positives = 323/565 (57%), Gaps = 9/565 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           ++T L+  Y        A T+F  MP RDVV+W  M+AGY     ++      + M +++
Sbjct: 166 VSTALVDVYAKCASFRHAATVFRRMPARDVVAWNAMLAGYALHGKYSDTIACLLLM-QDD 224

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIK----EGLEGSIYVENSLMDVYATCCIS 163
             PNA TL ++L       +LS    VH  +++       +  + V  +L+D+YA C   
Sbjct: 225 HAPNASTLVALLPLLAQHGALSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHL 284

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGV-EMNPYSFSIAVR 222
           +  +R VF  M  +N+V+W+ L+ G+   G       +FK+ML +G+  ++P S + A+R
Sbjct: 285 VYASR-VFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALR 343

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           ACA+   +  GK +HA + K G  ++L   NS+L MY +   +  A   FD+M  KD ++
Sbjct: 344 ACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVS 403

Query: 283 WNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           ++ +++GY ++G + E   +F KM++    P+  T  S+I AC+ LAAL  G+  H  ++
Sbjct: 404 YSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVI 463

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
            RG+    ++ NALIDMYAKCG I  S++IF  M  RD+V+W +M+ GYG HG GKEA  
Sbjct: 464 VRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATA 523

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLL 460
           LF +M      PD + F+ +++ACSH+GLV EG ++F  M + Y + P  E Y  +VDLL
Sbjct: 524 LFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLL 583

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520
            R G + EAY+ I+ MP K D  VWG LLGAC+ H+  +LGK  +  +  L P   G ++
Sbjct: 584 ARGGFLDEAYQFIQGMPLKADVRVWGALLGACRVHKNIDLGKQVSSMIQQLGPEGTGNFV 643

Query: 521 ILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYG 580
           +LSNI++A G+++E A+ R I +  G KK  G SWIE+   +  FI  D+  + +  +Y 
Sbjct: 644 LLSNIFSAAGRFDEAAEVRIIQKEQGFKKSPGCSWIEINGSLHAFIGGDRSHAQSSEIYQ 703

Query: 581 VLEMLIRHMNETAYEPDIDCLIHDL 605
            L+ ++  +N+  Y  D   ++ D+
Sbjct: 704 ELDNILVDINKLGYRADTSFVLQDV 728



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/462 (27%), Positives = 219/462 (47%), Gaps = 18/462 (3%)

Query: 60  GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119
           G +  AR LFD++P   +  +  +I  Y+                R    PN +T   VL
Sbjct: 77  GDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFVL 136

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179
           KAC  +  L +A  VH  A + GL   ++V  +L+DVYA C  S  +A  VF  M  ++ 
Sbjct: 137 KACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCA-SFRHAATVFRRMPARDV 195

Query: 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAA 239
           V+W  ++ GYA  G  Y        ++ +    N  +    +   A  G +S G+ +HA 
Sbjct: 196 VAWNAMLAGYALHGK-YSDTIACLLLMQDDHAPNASTLVALLPLLAQHGALSQGRAVHAY 254

Query: 240 VIK----HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS 295
            ++    H     + V  ++LDMY +   L  A++ F+ M  ++ +TW+ ++ G+   G 
Sbjct: 255 SVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGR 314

Query: 296 S-ECLNMFSKMKSERFSPNCF----TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
             E  ++F  M ++     CF    +  S + ACA L+ L  G+Q+HA + + GL  +L 
Sbjct: 315 MLEAFSLFKDMLAQGL---CFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLT 371

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
             N+L+ MYAK G I  +  +F +M  +D V++++++ GY  +G   EA  +F +M    
Sbjct: 372 AGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACN 431

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470
           V+PD    ++++ ACSH   +  G     S+    +     I   ++D+  + GR+  + 
Sbjct: 432 VQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSR 491

Query: 471 ELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLK 512
           ++   MP + D   W  ++     H    LGK A    LD+K
Sbjct: 492 QIFDVMPAR-DIVSWNTMIAGYGIH---GLGKEATALFLDMK 529


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/561 (34%), Positives = 318/561 (56%), Gaps = 5/561 (0%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
            L+ +Y   GL+  AR +F EM ++D V++  M+ G +    H QA  +F  M R  +  
Sbjct: 175 TLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPA 234

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNARL 169
             FT SS+L    GM  L     VH + ++     +++V NSL+D Y+ C C  +D+ R 
Sbjct: 235 THFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDC--LDDMRR 292

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           +F++M  +++VS+  +I  YA +      L +F+EM   G +     ++  +    S   
Sbjct: 293 LFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPD 352

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           V  GK IHA ++  G  S   + N+++DMY +   L  A   F   +EK  I+W  +I G
Sbjct: 353 VHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITG 412

Query: 290 YEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           Y ++G   E L +FS M+     P+  TF+SII A ++LA +  G+Q+H+ ++R G   +
Sbjct: 413 YVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSS 472

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           +   + L+DMYAKCG + ++ + F EM +R+ ++W +++  Y  +G  K AI++F+ M+ 
Sbjct: 473 VFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLH 532

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVK 467
            G  PD + F++VL ACSH GL DE +KYF  M + Y+++P KE Y CV+D LGR G   
Sbjct: 533 CGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFS 592

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527
           +  +++  MPFK D  +W  +L +C+ H    L ++AA ++  ++P     Y+ILSNIYA
Sbjct: 593 QVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYA 652

Query: 528 AEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIR 587
             G+WE+ A  +KIMR  G +KE G SW+E++ K+  F +ND        +   L+ L +
Sbjct: 653 RAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYK 712

Query: 588 HMNETAYEPDIDCLIHDLEGE 608
            M++  Y+PDI C +H ++ E
Sbjct: 713 EMDKQGYKPDITCALHMVDHE 733



 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 132/450 (29%), Positives = 231/450 (51%), Gaps = 13/450 (2%)

Query: 46  SILATNLIKS-YFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
           +I + NLI S Y   G +  A+ LF   P R+  +WT+M+  + +    + A ++F  M+
Sbjct: 73  NIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAML 132

Query: 105 RNEVNPNAFTLSSVLK--ACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
              V P+  T+++VL    C           +H  AIK GL+  ++V N+L+D Y    +
Sbjct: 133 GEGVIPDRVTVTTVLNLPGC-------TVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGL 185

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            +  AR VF +M  K+ V++  ++ G +  G     L +F  M   G+    ++FS  + 
Sbjct: 186 -LAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILT 244

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
             A    +  G  +HA V++     N+ V NS+LD Y + DCL D  + FDEM E+D ++
Sbjct: 245 VAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVS 304

Query: 283 WNTIIAGYE-KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           +N IIA Y     ++  L +F +M+   F      + ++++   +L  +  G+Q+HA +V
Sbjct: 305 YNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLV 364

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
             GL     L NALIDMY+KCG +  ++  FS  S++  ++WT+++ GY  +G  +EA++
Sbjct: 365 LLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQ 424

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461
           LF +M ++G+RPDR  F +++ A S   ++  G +    +       +      +VD+  
Sbjct: 425 LFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYA 484

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
           + G + EA      MP +   S W  ++ A
Sbjct: 485 KCGCLDEALRTFDEMPERNSIS-WNAVISA 513



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 118/254 (46%), Gaps = 5/254 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +L   LI  Y   G+++ A++ F    E+  +SWT +I GY     H +A  +F +M R 
Sbjct: 373 LLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRA 432

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMD 165
            + P+  T SS++KA   +  +     +H   I+ G + S++  + L+D+YA C C  +D
Sbjct: 433 GLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGC--LD 490

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A   F++M  +N +SW  +I+ YAH G     + +F+ ML  G   +  +F   + AC+
Sbjct: 491 EALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACS 550

Query: 226 STGWVS-FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLITW 283
             G      K  H    ++           ++D   R  C S   +   EM  K D I W
Sbjct: 551 HNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIW 610

Query: 284 NTIIAGYEKSGSSE 297
            +I+      G+ E
Sbjct: 611 TSILHSCRIHGNQE 624



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 109/226 (48%), Gaps = 14/226 (6%)

Query: 204 EMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFD 263
            M+  G ++  Y  ++ +R+  S+G +   +    A+       N+  +N IL  Y    
Sbjct: 33  RMVKTGFDVLTYRLNLGLRSLLSSGHLHRAR----AMFDQMPHKNIFSLNLILSAYSSSG 88

Query: 264 CLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSII- 321
            L  A   F     ++  TW  ++  +  +G +S+ L++F  M  E   P+  T T+++ 
Sbjct: 89  DLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLN 148

Query: 322 -AACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDL 380
              C           +H   ++ GLD ++ + N L+D Y K G ++ ++++F EM D+D 
Sbjct: 149 LPGCTV-------PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDA 201

Query: 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS 426
           VT+ +MM+G    G   +A++LF  M ++G+      F ++LT  +
Sbjct: 202 VTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAA 247


>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/540 (37%), Positives = 311/540 (57%), Gaps = 7/540 (1%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI SY   G +  A  LFD MP ++++SWT +++GY   + H +A  +F  M +  + P+
Sbjct: 290 LIDSYVKCGRVRAAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPD 349

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNARLV 170
            F  SS+L +C  + +L     VH   IK  L    YV NSL+D+YA C C++   AR V
Sbjct: 350 MFACSSILTSCASLHALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLT--EARKV 407

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGY---GGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           F+     + V +  +I GY+  G  +     L +F +M    +  +  +F   +RA AS 
Sbjct: 408 FDIFAADDVVLFNAMIEGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASASL 467

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +   K IH  + K G   ++   ++++ +Y    CL D+   FDEM  KDL+ WN++ 
Sbjct: 468 TSLGLSKQIHGLMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMF 527

Query: 288 AGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           +GY ++S + E LN+F +++  R  P+ FTF  ++ A   LA+L  GQ+ H  +++RGL+
Sbjct: 528 SGYVQQSENEEALNLFLELQLSRDRPDEFTFVDMVTAAGNLASLQLGQEFHCQLLKRGLE 587

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            N  + NAL+DMYAKCG+  D+ K F   + RD+V W S++  Y  HG G++A+++ ++M
Sbjct: 588 CNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGRKALQMLEKM 647

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
           +  G+ P+ I F+ VL+ACSHAGLV++GLK F+ M  + + P  E Y C+V LLGRAGR+
Sbjct: 648 MCEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPETEHYVCMVSLLGRAGRL 707

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            EA ELI+ MP KP   VW  LL  C +     L + AA   +   P   G++ +LSNIY
Sbjct: 708 NEARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEYAAEMAILSDPKDSGSFTLLSNIY 767

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           A++G W +  K R+ M+  G  KE G SWIE+  +V  F++ DK       +Y VL+ L+
Sbjct: 768 ASKGMWTDAKKVRERMKFEGVVKEPGRSWIEINKEVHIFLSKDKSHCKANQIYEVLDDLL 827



 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 137/452 (30%), Positives = 236/452 (52%), Gaps = 6/452 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + T LI  Y  EG I+ AR +FD +PE+  V+WT MI+G         +  +F +++   
Sbjct: 185 VGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGN 244

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V P+ + LS+VL AC  +  L     +H   ++ G E    + N L+D Y  C   +  A
Sbjct: 245 VVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCG-RVRAA 303

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             +F+ M  KN +SWTTL++GY  +      + +F  M   G++ + ++ S  + +CAS 
Sbjct: 304 HKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASL 363

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             + FG  +HA  IK   G++  V NS++DMY + DCL++A + FD     D++ +N +I
Sbjct: 364 HALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMI 423

Query: 288 AGYEKSGSS----ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            GY + G+     + LN+F  M+     P+  TF S++ A A+L +L   +Q+H  + + 
Sbjct: 424 EGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKF 483

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           GL+ ++   +ALI +Y+ C  + DS+ +F EM  +DLV W SM  GY      +EA+ LF
Sbjct: 484 GLNLDIFAGSALIAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFSGYVQQSENEEALNLF 543

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
            E+  S  RPD   F+ ++TA  +   +  G ++   +    +  N  I   ++D+  + 
Sbjct: 544 LELQLSRDRPDEFTFVDMVTAAGNLASLQLGQEFHCQLLKRGLECNPYITNALLDMYAKC 603

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           G  ++A++   S   + D   W  ++ +   H
Sbjct: 604 GSPEDAHKAFDSAASR-DVVCWNSVISSYANH 634



 Score =  212 bits (539), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 122/397 (30%), Positives = 220/397 (55%), Gaps = 10/397 (2%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + L+  L+  Y   G +  AR +F++MPER++V+W+ M++       + ++  VF++  R
Sbjct: 79  TYLSNILMNLYSRAGGMVYARKVFEKMPERNLVTWSTMVSACNHHGFYEESLVVFLDFWR 138

Query: 106 NEVN-PNAFTLSSVLKACKGMKSLSNAAL--VHGMAIKEGLEGSIYVENSLMDVYATCCI 162
              N PN + LSS ++AC G+       +  +    +K   +  +YV   L+D Y     
Sbjct: 139 TRKNSPNEYILSSFIQACSGLDGSGRWMVFQLQSFLVKSRFDRDVYVGTLLIDFYLKEG- 197

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
           ++D ARLVF+ +  K+ V+WTT+I+G    G  Y  L +F +++   V  + Y  S  + 
Sbjct: 198 NIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILSTVLS 257

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           AC+   ++  GK IHA ++++G   +  +MN ++D Y +   +  A++ FD M  K++I+
Sbjct: 258 ACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMPNKNIIS 317

Query: 283 WNTIIAGYEK-SGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           W T+++GY++ S   E + +F+ M      P+ F  +SI+ +CA+L AL  G QVHA  +
Sbjct: 318 WTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEFGTQVHAYTI 377

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY---GAHGHGKE 398
           +  L  +  + N+LIDMYAKC  +++++K+F   +  D+V + +M+ GY   G      +
Sbjct: 378 KANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMIEGYSRLGTQWELHD 437

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGL 435
           A+ +F +M    +RP  + F+++L A   A L   GL
Sbjct: 438 ALNIFHDMRFRLIRPSLLTFVSLLRAS--ASLTSLGL 472



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 102/343 (29%), Positives = 180/343 (52%), Gaps = 9/343 (2%)

Query: 133 LVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHS 192
           +VHG  I  GLE   Y+ N LM++Y+     M  AR VF  M  +N V+W+T+++   H 
Sbjct: 65  VVHGQIIVSGLELDTYLSNILMNLYSRAG-GMVYARKVFEKMPERNLVTWSTMVSACNHH 123

Query: 193 GNGYGGLGVFKEML-LEGVEMNPYSFSIAVRACA----STGWVSFGKLIHAAVIKHGFGS 247
           G     L VF +         N Y  S  ++AC+    S  W+ F   + + ++K  F  
Sbjct: 124 GFYEESLVVFLDFWRTRKNSPNEYILSSFIQACSGLDGSGRWMVFQ--LQSFLVKSRFDR 181

Query: 248 NLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSEC-LNMFSKMK 306
           ++ V   ++D Y +   +  A   FD + EK  +TW T+I+G  K G S   L +F ++ 
Sbjct: 182 DVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLM 241

Query: 307 SERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNIS 366
                P+ +  +++++AC+ L  L  G+Q+HA I+R G + + +L N LID Y KCG + 
Sbjct: 242 EGNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVR 301

Query: 367 DSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS 426
            + K+F  M ++++++WT+++ GY  +   KEA+ELF  M K G++PD     ++LT+C+
Sbjct: 302 AAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCA 361

Query: 427 HAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
               ++ G +        N+  +  +   ++D+  +   + EA
Sbjct: 362 SLHALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEA 404



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 175/355 (49%), Gaps = 6/355 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCH---NQAWTVFVE 102
           S +  +LI  Y     + EAR +FD     DVV +  MI GY+        + A  +F +
Sbjct: 385 SYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMIEGYSRLGTQWELHDALNIFHD 444

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M    + P+  T  S+L+A   + SL  +  +HG+  K GL   I+  ++L+ VY+  C 
Sbjct: 445 MRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKFGLNLDIFAGSALIAVYSN-CY 503

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            + ++RLVF++MK K+ V W ++ +GY         L +F E+ L     + ++F   V 
Sbjct: 504 CLKDSRLVFDEMKVKDLVIWNSMFSGYVQQSENEEALNLFLELQLSRDRPDEFTFVDMVT 563

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           A  +   +  G+  H  ++K G   N  + N++LDMY +     DA++ FD    +D++ 
Sbjct: 564 AAGNLASLQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVC 623

Query: 283 WNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           WN++I+ Y   G   + L M  KM  E   PN  TF  +++AC+    +  G +    ++
Sbjct: 624 WNSVISSYANHGEGRKALQMLEKMMCEGIEPNYITFVGVLSACSHAGLVEDGLKQFELML 683

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD-LVTWTSMMIGYGAHGH 395
           R G++        ++ +  + G +++++++  +M  +   + W S++ G    G+
Sbjct: 684 RFGIEPETEHYVCMVSLLGRAGRLNEARELIEKMPTKPAAIVWRSLLSGCAKAGN 738



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 152/301 (50%), Gaps = 11/301 (3%)

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
           +  ++H  +I  G   +  + N ++++Y R   +  A + F++M E++L+TW+T+++   
Sbjct: 62  YHNVVHGQIIVSGLELDTYLSNILMNLYSRAGGMVYARKVFEKMPERNLVTWSTMVSACN 121

Query: 292 KSG-SSECLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQ----QVHAGIVRRGL 345
             G   E L +F    ++ + SPN +  +S I AC+ L     G+    Q+ + +V+   
Sbjct: 122 HHGFYEESLVVFLDFWRTRKNSPNEYILSSFIQACSGLDG--SGRWMVFQLQSFLVKSRF 179

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           D ++ +   LID Y K GNI  ++ +F  + ++  VTWT+M+ G    G    +++LF +
Sbjct: 180 DRDVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQ 239

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           +++  V PD  +   VL+ACS    ++ G +    +  Y    +  +   ++D   + GR
Sbjct: 240 LMEGNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGR 299

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNMMGTYIILS 523
           V+ A++L   MP K   S W  LL   K++ L    +    ++    LKP+M     IL+
Sbjct: 300 VRAAHKLFDGMPNKNIIS-WTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILT 358

Query: 524 N 524
           +
Sbjct: 359 S 359


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/491 (38%), Positives = 300/491 (61%), Gaps = 2/491 (0%)

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + P+    +++LK C  +  L    LVH   +    +  + ++NSL+ +YA C  S++ A
Sbjct: 70  LEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCG-SLEGA 128

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R +F++M  ++ VSWT++ITGYA +      L +F  ML +G E N ++ S  V+ C   
Sbjct: 129 RRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYM 188

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
              + G+ IHA   K+G  SN+ V +S++DMY R   L +A   FD++  K+ ++WN +I
Sbjct: 189 ASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALI 248

Query: 288 AGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           AGY + G   E L +F +M+ E + P  FT+++++++C+++  L  G+ +HA +++    
Sbjct: 249 AGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQK 308

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
               + N L+ MYAK G+I D++K+F ++   D+V+  SM+IGY  HG GKEA + FDEM
Sbjct: 309 LVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEM 368

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
           ++ G+ P+ I F++VLTACSHA L+DEG  YF  M  YN+ P    Y  +VDLLGRAG +
Sbjct: 369 IRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLMRKYNIEPKVSHYATIVDLLGRAGLL 428

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            +A   I+ MP +P  ++WG LLGA K H+   +G  AA RV +L P+  GT+ +L+NIY
Sbjct: 429 DQAKSFIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLANIY 488

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           A+ G+WE+ AK RKIM+  G KKE   SW+EV + V  F+AND      + ++ + E L 
Sbjct: 489 ASAGRWEDVAKVRKIMKDSGVKKEPACSWVEVENSVHVFVANDVAHPQKEKIHKMWEKLN 548

Query: 587 RHMNETAYEPD 597
           + + E  Y PD
Sbjct: 549 QKIKEIGYVPD 559



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 179/344 (52%), Gaps = 2/344 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++  +L+  Y   G +E AR LFDEMP RD+VSWT MI GY   +  + A  +F  M+ +
Sbjct: 110 VIQNSLLFMYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSD 169

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
              PN FTLSS++K C  M S +    +H    K G   +++V +SL+D+YA C   +  
Sbjct: 170 GAEPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGY-LGE 228

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A LVF+ +  KN+VSW  LI GYA  G G   L +F  M  EG     +++S  + +C+S
Sbjct: 229 AMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSS 288

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G +  GK +HA ++K        V N++L MY +   + DA + FD++ + D+++ N++
Sbjct: 289 MGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSM 348

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           + GY + G   E    F +M      PN  TF S++ AC+    L  G+     + +  +
Sbjct: 349 LIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLMRKYNI 408

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIG 389
           +  ++    ++D+  + G +  ++    EM     V     ++G
Sbjct: 409 EPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIEPTVAIWGALLG 452



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 177/319 (55%), Gaps = 13/319 (4%)

Query: 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251
           S N   GL V   +    +E +   ++  ++ C   G +  GKL+H  V+   F  +L +
Sbjct: 52  SLNSKTGLHVLDLIDCGSLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVI 111

Query: 252 MNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERF 310
            NS+L MY R   L  A + FDEM  +D+++W ++I GY ++  +S+ L +F +M S+  
Sbjct: 112 QNSLLFMYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGA 171

Query: 311 SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQK 370
            PN FT +S++  C  +A+ +CG+Q+HA   + G   N+ + ++L+DMYA+CG + ++  
Sbjct: 172 EPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAML 231

Query: 371 IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           +F ++  ++ V+W +++ GY   G G+EA+ LF  M + G RP    + A+L++CS  G 
Sbjct: 232 VFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGC 291

Query: 431 VDEGLKYFKSMNDYNVNPNKEIYGCV----VDLLGRAGRVKEAYELIKSMPFKPDESVWG 486
           +++G    K ++ + +  ++++ G V    + +  ++G +++A ++   +  K D     
Sbjct: 292 LEQG----KWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKL-VKVDVVSCN 346

Query: 487 PLLGACKEHRLPNLGKLAA 505
            +L    +H    LGK AA
Sbjct: 347 SMLIGYAQH---GLGKEAA 362


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 214/622 (34%), Positives = 341/622 (54%), Gaps = 69/622 (11%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPER---DVVSWTVMIAGYTSFNCHNQAWTVF-----VEM 103
           L+  Y   G +EEA  +FDE+ +R   DV+SW  +++ +      + AWT       + +
Sbjct: 196 LVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVK---SSNAWTALDLFSKMTL 252

Query: 104 VRNEVNPNA----FTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
           + +E   N      ++ ++L AC  +K++     VHG AI+ G    ++V N+L+D YA 
Sbjct: 253 IVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAK 312

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGN------------------------- 194
           C + M+NA  VFN M++K+ VSW  ++ GY+ SGN                         
Sbjct: 313 CGL-MENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTA 371

Query: 195 ---GYG-------GLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH- 243
              GY         L +F++M+  G   N  +    + ACAS G  S G  IHA  +K+ 
Sbjct: 372 VIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNC 431

Query: 244 ---------GFGSNLPVMNSILDMYCRFDCLSDANQYFDE--MTEKDLITWNTIIAGYEK 292
                    G   +L V N+++DMY +      A   FD+  + E++++TW  +I G+ +
Sbjct: 432 LLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQ 491

Query: 293 SG-SSECLNMFSKMKSERF--SPNCFTFTSIIAACATLAALSCGQQVHAGIVR--RGLDG 347
            G S++ L +F +M SE +  +PN +T + I+ ACA LAA+  G+Q+HA ++R  R    
Sbjct: 492 YGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESS 551

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
              +AN LIDMY+KCG++  ++ +F  MS +  ++WTSMM GYG HG G EA+++FD+M 
Sbjct: 552 AYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMR 611

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRV 466
           K+G  PD I F+ VL ACSH G+VD+GL YF SM+ DY + P  E Y C +DLL R+GR+
Sbjct: 612 KAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRL 671

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            +A+  +K MP +P   VW  LL AC+ H    L + A  +++++     G+Y ++SNIY
Sbjct: 672 DKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIY 731

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           A  G+W++ A+ R +M+  G KK  G SW++ +     F   D+    +  +Y +LE LI
Sbjct: 732 ATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLI 791

Query: 587 RHMNETAYEPDIDCLIHDLEGE 608
             +    Y P+ +  +HD++ E
Sbjct: 792 DRIKAMGYVPETNFALHDVDEE 813



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 139/510 (27%), Positives = 245/510 (48%), Gaps = 74/510 (14%)

Query: 39  PLIPKGPSI----LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHN 94
           P +P  P I    L T ++ SY   G  + A  + + +     V W ++I  +      +
Sbjct: 78  PALPSEPFISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLD 137

Query: 95  QAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLM 154
            A  V   M+R    P+ FTL  VLKAC  + S    +  HG+    G E ++++ N+L+
Sbjct: 138 SAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALV 197

Query: 155 DVYATCCISMDNARLVFNDMKWK---NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVE 211
            +Y+ C  S++ A ++F+++  +   + +SW ++++ +  S N +  L +F +M L   E
Sbjct: 198 AMYSRCG-SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHE 256

Query: 212 --MNPYSFSIAV----RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCL 265
              N  S  I++     AC S   V   K +H   I++G   ++ V N+++D Y +   +
Sbjct: 257 KPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLM 316

Query: 266 SDANQYFDEMTEKDLITWNTIIAGYEKSG------------------------------- 294
            +A + F+ M  KD+++WN ++AGY +SG                               
Sbjct: 317 ENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGY 376

Query: 295 -----SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR------ 343
                S E LN+F +M      PNC T  S+++ACA+L A S G ++HA  ++       
Sbjct: 377 SQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLD 436

Query: 344 ----GLDGNLALANALIDMYAKCGNISDSQKIFSE--MSDRDLVTWTSMMIGYGAHGHGK 397
               G D +L + NALIDMY+KC +   ++ IF +  + +R++VTWT M+ G+  +G   
Sbjct: 437 NDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSN 496

Query: 398 EAIELFDEMVKS--GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE---- 451
           +A++LF EM+    GV P+      +L AC+H   +  G    K ++ Y +  ++     
Sbjct: 497 DALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIG----KQIHAYVLRHHRYESSA 552

Query: 452 --IYGCVVDLLGRAGRVKEAYELIKSMPFK 479
             +  C++D+  + G V  A  +  SM  K
Sbjct: 553 YFVANCLIDMYSKCGDVDTARHVFDSMSQK 582



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 132/312 (42%), Gaps = 34/312 (10%)

Query: 209 GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGS--------NLPVMNS------ 254
           GV++ P  F+  ++ C S   V     IH  +I  G  S        +LP + S      
Sbjct: 32  GVDVYPSHFASLLKECKSANTV---HQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISP 88

Query: 255 ------ILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKS 307
                 ++  Y        A    + +T    + WN +I  + K G     +N+  +M  
Sbjct: 89  RSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLR 148

Query: 308 ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISD 367
               P+ FT   ++ AC  L +  CG   H  I   G + N+ + NAL+ MY++CG++ +
Sbjct: 149 AGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEE 208

Query: 368 SQKIFSEMSDR---DLVTWTSMMIGYGAHGHGKEAIELFDEMV------KSGVRPDRIVF 418
           +  IF E++ R   D+++W S++  +    +   A++LF +M        +  R D I  
Sbjct: 209 ASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISI 268

Query: 419 MAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPF 478
           + +L AC     V +  +   +       P+  +   ++D   + G ++ A ++   M F
Sbjct: 269 VNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEF 328

Query: 479 KPDESVWGPLLG 490
           K D   W  ++ 
Sbjct: 329 K-DVVSWNAMVA 339



 Score = 46.6 bits (109), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A  LI  Y   G ++ AR +FD M ++  +SWT M+ GY      ++A  +F +M +  
Sbjct: 555 VANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAG 614

Query: 108 VNPNAFTLSSVLKAC 122
             P+  T   VL AC
Sbjct: 615 FVPDDITFLVVLYAC 629


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/566 (34%), Positives = 326/566 (57%), Gaps = 6/566 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMP--ERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           ++T L+  Y   G + +A+TLF+ +   +RD+V+W  MIA ++    H Q      +M +
Sbjct: 144 VSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQ 203

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             V PN+ TL S+L       +L     +H   I+     ++ ++ +L+D+YA C + + 
Sbjct: 204 AGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHL-LF 262

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEML-LEGVEMNPYSFSIAVRAC 224
            AR +FN +  KNDV W+ +I GY    +    L ++ +ML + G+   P + +  +RAC
Sbjct: 263 YARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRAC 322

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           A    +  GK +H  +IK G   +  V NS++ MY +   + +A  + DEM  KD ++++
Sbjct: 323 AQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYS 382

Query: 285 TIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            II+G  ++G +E  L +F +M+S   +P   T  +++ AC+ LAAL  G   H   V R
Sbjct: 383 AIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVR 442

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G   + ++ NA+IDMY+KCG I+ S++IF  M +RD+++W +M+IGYG HG   EA+ LF
Sbjct: 443 GFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLF 502

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGR 462
            E+   G++PD +  +AVL+ACSH+GLV EG  +F SM+ ++N+ P    Y C+VDLL R
Sbjct: 503 QELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLAR 562

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AG + EAY  I+ MPF P+  +WG LL AC+ H+   +G+  + ++  L P   G ++++
Sbjct: 563 AGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLLGPEGTGNFVLM 622

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           SNIY++ G+W++ A  R I R  G KK  G SW+E+   +  FI   +    +  +   L
Sbjct: 623 SNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEISGVIHVFIGGHQSHPQSASINKKL 682

Query: 583 EMLIRHMNETAYEPDIDCLIHDLEGE 608
           + L+  M +  Y  D   ++HD+E E
Sbjct: 683 QELLVQMKKLGYRADSSFVLHDVEEE 708



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 131/511 (25%), Positives = 244/511 (47%), Gaps = 17/511 (3%)

Query: 23  KQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTV 82
           +Q  + ++  S    P  +    +  AT L + +     I+ AR +FD++P+  VV W +
Sbjct: 19  RQRHRQIRSFSPHPHPHRVSDSDAA-ATQLARYHISRNEIQLARHVFDQIPKPSVVLWNM 77

Query: 83  MIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG 142
           MI  Y       Q+  +++ M++  V P  FT   +LKAC  +++L    L+H  A   G
Sbjct: 78  MIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKACSSLQALQLGRLIHTHAHILG 137

Query: 143 LEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND--VSWTTLITGYAHSGNGYGGLG 200
           L   +YV  +L+ +YA C   +  A+ +FN +  ++   V+W  +I  ++        + 
Sbjct: 138 LSMDLYVSTALLHMYAKCG-HLYQAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIH 196

Query: 201 VFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYC 260
              +M   GV  N  +    +        +  GK IHA  I++ F  N+ +  ++LDMY 
Sbjct: 197 SVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYA 256

Query: 261 RFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKS-ERFSPNCFTFT 318
           +   L  A + F+ + +K+ + W+ +I GY    S S+ L ++  M      +P   T  
Sbjct: 257 KCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLA 316

Query: 319 SIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR 378
           +++ ACA L  L  G+++H  +++ G+D +  + N+LI MYAKCG + ++     EM  +
Sbjct: 317 TMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAK 376

Query: 379 DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYF 438
           D V++++++ G   +G+ ++A+ +F +M  SG+ P     +A+L ACSH   +  G    
Sbjct: 377 DTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCH 436

Query: 439 KSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL------GAC 492
                     +  I   ++D+  + G++  + E+   M  + D   W  ++      G C
Sbjct: 437 GYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNR-DIISWNTMIIGYGIHGLC 495

Query: 493 KEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
            E     L     L+ L LKP+ +    +LS
Sbjct: 496 VE----ALSLFQELQALGLKPDDVTLIAVLS 522



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 173/332 (52%), Gaps = 4/332 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV-R 105
           +L T L+  Y    L+  AR +F+ + +++ V W+ MI GY   +  + A  ++ +M+  
Sbjct: 246 VLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCI 305

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             +NP   TL+++L+AC  +  L     +H   IK G++    V NSL+ +YA C I MD
Sbjct: 306 YGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGI-MD 364

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           NA    ++M  K+ VS++ +I+G   +G     L +F++M   G+     +    + AC+
Sbjct: 365 NAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACS 424

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               +  G   H   +  GF ++  + N+I+DMY +   ++ + + FD M  +D+I+WNT
Sbjct: 425 HLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNT 484

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR- 343
           +I GY   G   E L++F ++++    P+  T  ++++AC+    ++ G+   + + +  
Sbjct: 485 MIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNF 544

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEM 375
            +   +A    ++D+ A+ GN+ ++      M
Sbjct: 545 NIKPRMAHYICMVDLLARAGNLDEAYTFIQRM 576


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/561 (34%), Positives = 318/561 (56%), Gaps = 5/561 (0%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
            L+ +Y   GL+  AR +F EM ++D V++  M+ G +    H QA  +F  M R  +  
Sbjct: 175 TLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPA 234

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNARL 169
             FT SS+L    GM  L     VH + ++     +++V NSL+D Y+ C C  +D+ R 
Sbjct: 235 THFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDC--LDDMRR 292

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           +F++M  +++VS+  +I  YA +      L +F+EM   G +     ++  +    S   
Sbjct: 293 LFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPD 352

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           V  GK IHA ++  G  S   + N+++DMY +   L  A   F   +EK  I+W  +I G
Sbjct: 353 VHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITG 412

Query: 290 YEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           Y ++G   E L +FS M+     P+  TF+SII A ++LA +  G+Q+H+ ++R G   +
Sbjct: 413 YVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSS 472

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           +   + L+DMYAKCG + ++ + F EM +R+ ++W +++  Y  +G  K AI++F+ M+ 
Sbjct: 473 VFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLH 532

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVK 467
            G  PD + F++VL ACSH GL DE +KYF  M + Y+++P KE Y CV+D LGR G   
Sbjct: 533 CGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFS 592

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527
           +  +++  MPFK D  +W  +L +C+ H    L ++AA ++  ++P     Y+ILSNIYA
Sbjct: 593 QVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYA 652

Query: 528 AEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIR 587
             G+WE+ A  +KIMR  G +KE G SW+E++ K+  F +ND        +   L+ L +
Sbjct: 653 RAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYK 712

Query: 588 HMNETAYEPDIDCLIHDLEGE 608
            M++  Y+PDI C +H ++ E
Sbjct: 713 EMDKQGYKPDITCALHMVDHE 733



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 132/450 (29%), Positives = 231/450 (51%), Gaps = 13/450 (2%)

Query: 46  SILATNLIKS-YFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
           +I + NLI S Y   G +  A+ LF   P R+  +WT+M+  + +    + A ++F  M+
Sbjct: 73  NIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAML 132

Query: 105 RNEVNPNAFTLSSVLK--ACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
              V P+  T+++VL    C           +H  AIK GL+  ++V N+L+D Y    +
Sbjct: 133 GEGVIPDRVTVTTVLNLPGC-------TVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGL 185

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            +  AR VF +M  K+ V++  ++ G +  G     L +F  M   G+    ++FS  + 
Sbjct: 186 -LAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILT 244

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
             A    +  G  +HA V++     N+ V NS+LD Y + DCL D  + FDEM E+D ++
Sbjct: 245 VAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVS 304

Query: 283 WNTIIAGYE-KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           +N IIA Y     ++  L +F +M+   F      + ++++   +L  +  G+Q+HA +V
Sbjct: 305 YNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLV 364

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
             GL     L NALIDMY+KCG +  ++  FS  S++  ++WT+++ GY  +G  +EA++
Sbjct: 365 LLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQ 424

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461
           LF +M ++G+RPDR  F +++ A S   ++  G +    +       +      +VD+  
Sbjct: 425 LFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYA 484

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
           + G + EA      MP +   S W  ++ A
Sbjct: 485 KCGCLDEALRTFDEMPERNSIS-WNAVISA 513



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 118/254 (46%), Gaps = 5/254 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +L   LI  Y   G+++ A++ F    E+  +SWT +I GY     H +A  +F +M R 
Sbjct: 373 LLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRA 432

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMD 165
            + P+  T SS++KA   +  +     +H   I+ G + S++  + L+D+YA C C  +D
Sbjct: 433 GLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGC--LD 490

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A   F++M  +N +SW  +I+ YAH G     + +F+ ML  G   +  +F   + AC+
Sbjct: 491 EALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACS 550

Query: 226 STGWV-SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLITW 283
             G      K  H    ++           ++D   R  C S   +   EM  K D I W
Sbjct: 551 HNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIW 610

Query: 284 NTIIAGYEKSGSSE 297
            +I+      G+ E
Sbjct: 611 TSILHSCRIHGNQE 624



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 109/226 (48%), Gaps = 14/226 (6%)

Query: 204 EMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFD 263
            M+  G ++  Y  ++ +R+  S+G +   +    A+       N+  +N IL  Y    
Sbjct: 33  RMVKTGFDVLTYRLNLGLRSLLSSGHLHRAR----AMFDQMPHKNIFSLNLILSAYSSSG 88

Query: 264 CLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSII- 321
            L  A   F     ++  TW  ++  +  +G +S+ L++F  M  E   P+  T T+++ 
Sbjct: 89  DLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLN 148

Query: 322 -AACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDL 380
              C           +H   ++ GLD ++ + N L+D Y K G ++ ++++F EM D+D 
Sbjct: 149 LPGCTV-------PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDA 201

Query: 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS 426
           VT+ +MM+G    G   +A++LF  M ++G+      F ++LT  +
Sbjct: 202 VTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAA 247


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 214/622 (34%), Positives = 341/622 (54%), Gaps = 69/622 (11%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPER---DVVSWTVMIAGYTSFNCHNQAWTVF-----VEM 103
           L+  Y   G +EEA  +FDE+ +R   DV+SW  +++ +      + AWT       + +
Sbjct: 203 LVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVK---SSNAWTALDLFSKMTL 259

Query: 104 VRNEVNPNA----FTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
           + +E   N      ++ ++L AC  +K++     VHG AI+ G    ++V N+L+D YA 
Sbjct: 260 IVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAK 319

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGN------------------------- 194
           C + M+NA  VFN M++K+ VSW  ++ GY+ SGN                         
Sbjct: 320 CGL-MENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTA 378

Query: 195 ---GYG-------GLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH- 243
              GY         L +F++M+  G   N  +    + ACAS G  S G  IHA  +K+ 
Sbjct: 379 VIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNC 438

Query: 244 ---------GFGSNLPVMNSILDMYCRFDCLSDANQYFDE--MTEKDLITWNTIIAGYEK 292
                    G   +L V N+++DMY +      A   FD+  + E++++TW  +I G+ +
Sbjct: 439 LLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQ 498

Query: 293 SG-SSECLNMFSKMKSERF--SPNCFTFTSIIAACATLAALSCGQQVHAGIVR--RGLDG 347
            G S++ L +F +M SE +  +PN +T + I+ ACA LAA+  G+Q+HA ++R  R    
Sbjct: 499 YGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESS 558

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
              +AN LIDMY+KCG++  ++ +F  MS +  ++WTSMM GYG HG G EA+++FD+M 
Sbjct: 559 AYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMR 618

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRV 466
           K+G  PD I F+ VL ACSH G+VD+GL YF SM+ DY + P  E Y C +DLL R+GR+
Sbjct: 619 KAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRL 678

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            +A+  +K MP +P   VW  LL AC+ H    L + A  +++++     G+Y ++SNIY
Sbjct: 679 DKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIY 738

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           A  G+W++ A+ R +M+  G KK  G SW++ +     F   D+    +  +Y +LE LI
Sbjct: 739 ATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLI 798

Query: 587 RHMNETAYEPDIDCLIHDLEGE 608
             +    Y P+ +  +HD++ E
Sbjct: 799 DRIKAMGYVPETNFALHDVDEE 820



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 139/510 (27%), Positives = 245/510 (48%), Gaps = 74/510 (14%)

Query: 39  PLIPKGPSI----LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHN 94
           P +P  P I    L T ++ SY   G  + A  + + +     V W ++I  +      +
Sbjct: 85  PALPSEPFISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLD 144

Query: 95  QAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLM 154
            A  V   M+R    P+ FTL  VLKAC  + S    +  HG+    G E ++++ N+L+
Sbjct: 145 SAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALV 204

Query: 155 DVYATCCISMDNARLVFNDMKWK---NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVE 211
            +Y+ C  S++ A ++F+++  +   + +SW ++++ +  S N +  L +F +M L   E
Sbjct: 205 AMYSRCG-SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHE 263

Query: 212 --MNPYSFSIAV----RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCL 265
              N  S  I++     AC S   V   K +H   I++G   ++ V N+++D Y +   +
Sbjct: 264 KPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLM 323

Query: 266 SDANQYFDEMTEKDLITWNTIIAGYEKSG------------------------------- 294
            +A + F+ M  KD+++WN ++AGY +SG                               
Sbjct: 324 ENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGY 383

Query: 295 -----SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR------ 343
                S E LN+F +M      PNC T  S+++ACA+L A S G ++HA  ++       
Sbjct: 384 SQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLD 443

Query: 344 ----GLDGNLALANALIDMYAKCGNISDSQKIFSE--MSDRDLVTWTSMMIGYGAHGHGK 397
               G D +L + NALIDMY+KC +   ++ IF +  + +R++VTWT M+ G+  +G   
Sbjct: 444 NDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSN 503

Query: 398 EAIELFDEMVKS--GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE---- 451
           +A++LF EM+    GV P+      +L AC+H   +  G    K ++ Y +  ++     
Sbjct: 504 DALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIG----KQIHAYVLRHHRYESSA 559

Query: 452 --IYGCVVDLLGRAGRVKEAYELIKSMPFK 479
             +  C++D+  + G V  A  +  SM  K
Sbjct: 560 YFVANCLIDMYSKCGDVDTARHVFDSMSQK 589



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 132/312 (42%), Gaps = 34/312 (10%)

Query: 209 GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGS--------NLPVMNS------ 254
           GV++ P  F+  ++ C S   V     IH  +I  G  S        +LP + S      
Sbjct: 39  GVDVYPSHFASLLKECKSANTV---HQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISP 95

Query: 255 ------ILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKS 307
                 ++  Y        A    + +T    + WN +I  + K G     +N+  +M  
Sbjct: 96  RSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLR 155

Query: 308 ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISD 367
               P+ FT   ++ AC  L +  CG   H  I   G + N+ + NAL+ MY++CG++ +
Sbjct: 156 AGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEE 215

Query: 368 SQKIFSEMSDR---DLVTWTSMMIGYGAHGHGKEAIELFDEMV------KSGVRPDRIVF 418
           +  IF E++ R   D+++W S++  +    +   A++LF +M        +  R D I  
Sbjct: 216 ASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISI 275

Query: 419 MAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPF 478
           + +L AC     V +  +   +       P+  +   ++D   + G ++ A ++   M F
Sbjct: 276 VNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEF 335

Query: 479 KPDESVWGPLLG 490
           K D   W  ++ 
Sbjct: 336 K-DVVSWNAMVA 346



 Score = 46.6 bits (109), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A  LI  Y   G ++ AR +FD M ++  +SWT M+ GY      ++A  +F +M +  
Sbjct: 562 VANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAG 621

Query: 108 VNPNAFTLSSVLKAC 122
             P+  T   VL AC
Sbjct: 622 FVPDDITFLVVLYAC 636


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/558 (36%), Positives = 321/558 (57%), Gaps = 6/558 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + ++T L+  Y     IE++  +F+ M E +VVSW  MI G+TS + +  A+ +F+ M+ 
Sbjct: 206 TFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMG 265

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             V P+A T   V KA   ++ ++ A  V G A++ G++ +  V  +L+D+ + C  S+ 
Sbjct: 266 EGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCG-SLQ 324

Query: 166 NARLVFND--MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
            AR +FN   +  + +  W  +I+GY  SG     L +F +M    + ++ Y++     A
Sbjct: 325 EARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNA 384

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSN-LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
            A+   +S GK +HA  IK G   N + + N++ + Y +   L D  + F+ M ++DLI+
Sbjct: 385 IAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLIS 444

Query: 283 WNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           W +++  Y +     + + +FS M++E  +PN FTF+S++ +CA L  L  GQQVH  I 
Sbjct: 445 WTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIIC 504

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           + GLD +  + +AL+DMYAKCG + D++K+F+ +S+ D V+WT+++ G+  HG   +A++
Sbjct: 505 KVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQ 564

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLL 460
           LF  MV+ GV P+ + F+ VL ACSH GLV+EGL+YFK M   Y + P  E Y C+VDLL
Sbjct: 565 LFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLL 624

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520
            R G + +A E I  MP +P+E VW  LLGAC+ H    LG+LAA ++L  K     TY+
Sbjct: 625 SRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKILSFKAENSATYV 684

Query: 521 ILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYG 580
           +LSN Y   G +++    R +M+  G KKE G SWI V   +  F A D+       +Y 
Sbjct: 685 LLSNTYIESGSYKDGLSLRHVMKEQGVKKEPGCSWISVNGTLHKFYAGDQQHPEKDKIYA 744

Query: 581 VLEMLIRHMNETAYEPDI 598
            LE L   +      PD+
Sbjct: 745 KLEELKLKLISLDDVPDL 762



 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 140/503 (27%), Positives = 258/503 (51%), Gaps = 9/503 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +L  ++  +Y     I+ A  LFD+M +R+  SWTV+IAG          +  F EM   
Sbjct: 106 VLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQ 165

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + P+ F  S +L+ C G+ S+    +VH   +  G     +V  +L+++YA     +++
Sbjct: 166 GIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAK-LQEIED 224

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           +  VFN M   N VSW  +ITG+  +        +F  M+ EGV  +  +F    +A   
Sbjct: 225 SYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGM 284

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE--MTEKDLITWN 284
              V+  K +    ++ G  SN  V  +++DM  +   L +A   F+   +T +    WN
Sbjct: 285 LRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWN 344

Query: 285 TIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +I+GY +SG +E  L +F+KM       + +T+ S+  A A L  LS G++VHA  ++ 
Sbjct: 345 AMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKS 404

Query: 344 GLDGN-LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
           GL+ N ++++NA+ + YAKCG++ D +K+F+ M DRDL++WTS++  Y       +AIE+
Sbjct: 405 GLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEI 464

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           F  M   G+ P++  F +VL +C++  L++ G +    +    ++ +K I   +VD+  +
Sbjct: 465 FSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAK 524

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNMMGTYI 520
            G + +A ++   +    D   W  ++    +H + +  L     +  L ++PN + T++
Sbjct: 525 CGCLGDAKKVFNRIS-NADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAV-TFL 582

Query: 521 ILSNIYAAEGKWEEFAKFRKIMR 543
            +    +  G  EE  ++ K+M+
Sbjct: 583 CVLFACSHGGLVEEGLQYFKLMK 605



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 164/315 (52%), Gaps = 6/315 (1%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEG--SIYVENSLMDVYATCCISMDNARLVFN 172
           L  +L+ C   + L  A  VHG  +K       S+ + N +   Y+ C   +D A  +F+
Sbjct: 71  LVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCS-DIDAACRLFD 129

Query: 173 DMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSF 232
            M  +N  SWT LI G A +G    G   F EM  +G+  + +++S  ++ C     +  
Sbjct: 130 QMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIEL 189

Query: 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEK 292
           G ++HA ++  GF S+  V  ++L+MY +   + D+ + F+ MTE ++++WN +I G+  
Sbjct: 190 GNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTS 249

Query: 293 SG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLAL 351
           +    +  ++F +M  E  +P+  TF  +  A   L  ++  ++V    +  G+D N  +
Sbjct: 250 NDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLV 309

Query: 352 ANALIDMYAKCGNISDSQKIFSE--MSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
             ALIDM +KCG++ +++ IF+   ++ R    W +M+ GY   G  ++A+ELF +M ++
Sbjct: 310 GTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQN 369

Query: 410 GVRPDRIVFMAVLTA 424
            +  D   + +V  A
Sbjct: 370 DIYLDHYTYCSVFNA 384


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/559 (36%), Positives = 325/559 (58%), Gaps = 9/559 (1%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  +   G +  AR +F+ + ER VV WT+MI  Y    C  +A  +F+ M+ +   P+
Sbjct: 189 LIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGMLEDGFEPD 248

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI--SMDNARL 169
            +T+SS++ AC    S      +H + ++ GL     V   L+D+Y    +  SM+ AR 
Sbjct: 249 GYTMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMECARK 308

Query: 170 VFNDMKWKNDVSWTTLITGYAH-SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
           VF  M   N +SWT LI+GY    G     + +  EML E +E N  ++S  ++ACA+  
Sbjct: 309 VFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTYSSLLKACANLS 368

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
               G+ IHA V+K   G+   V N+++ MY    C+ +A + FD++ E++L++ ++ I 
Sbjct: 369 DQDSGRQIHARVMKTSIGNVNVVGNALVSMYAESGCMEEARKAFDQLYERNLLSTSSDIG 428

Query: 289 GYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
              +S +S      S+++S     + FTF S+++A AT+   + GQQ+HA  ++ G + +
Sbjct: 429 ETGRSNAS----WSSQIESMDVGVSTFTFASLLSAAATVGLPTKGQQLHALSIKTGFESD 484

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSD-RDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
             ++N+L+ MY++CG + D+ + F EM D  ++++WTS++     HGH + A+ LF +M+
Sbjct: 485 KGISNSLVSMYSRCGYLDDACRAFDEMEDDHNVISWTSIISALAKHGHAERALSLFHDMI 544

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRV 466
            SGV+P+ + ++AVL+ACSH GLV EG +YF+SM  D+ + P  E Y C+VDLL R+G V
Sbjct: 545 LSGVKPNDVTYIAVLSACSHVGLVKEGKEYFRSMQKDHRLIPRMEHYACMVDLLARSGLV 604

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
           +EA E I  MP K D  VW  LLGAC+ +    +G++AA  V+DL+P     Y++LSN+Y
Sbjct: 605 QEALEFINEMPCKADALVWKTLLGACRTYENIEIGEIAARHVIDLEPQDPAPYVLLSNLY 664

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           A  G W+E A+ R +MR     KE G+SW+ V + +  F A D      Q +Y  L +LI
Sbjct: 665 AHGGLWDEVARIRSLMRHRNLSKETGLSWMHVGNTIHEFRAGDTSHPRAQEIYAKLAVLI 724

Query: 587 RHMNETAYEPDIDCLIHDL 605
           R + +  Y PD   ++HD+
Sbjct: 725 REIKDIGYVPDTSIVLHDM 743



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 143/335 (42%), Gaps = 53/335 (15%)

Query: 251 VMNSILDMYCRFDCLSDANQYFDEMTE-KDLITWNTIIAGYEKSGS-SECLNMFSKMKSE 308
           V NS+L MY +   +  A + FD M   +DL++W  +     ++G+  E L +  +M   
Sbjct: 81  VANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCLTRNGAEQEALVLLGEMLES 140

Query: 309 RFSPNCFTFTSIIAACATLAAL-SCGQQVHAGIVRRGLDG-NLALANALIDMYAKCGNIS 366
              PN FT  +   AC       S G  V    ++ G  G ++++  ALIDM+A+ G++ 
Sbjct: 141 GLRPNAFTLCAAAHACFPGELFRSSGGTVLGFAIKTGFWGTDVSVGCALIDMFARNGDLV 200

Query: 367 DSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS 426
            ++K+F+ + +R +V WT M+  Y   G   +A+ELF  M++ G  PD     ++++AC+
Sbjct: 201 AARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGMLEDGFEPDGYTMSSMVSACA 260

Query: 427 H--------------------------AGLVDE------------GLKYFKSMNDYNVNP 448
                                       GLVD               K FK M  +NV  
Sbjct: 261 EQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMECARKVFKRMPTHNVMS 320

Query: 449 NKEIYGCVVDLLGRAGRVKEAYELIKSM---PFKPDESVWGPLLGACKEHRLPNLGKLAA 505
              +    V      G+   A EL+  M     +P+   +  LL AC      + G+   
Sbjct: 321 WTALISGYVQC---GGQENNAVELLCEMLNESIEPNHLTYSSLLKACANLSDQDSGRQIH 377

Query: 506 LRVLDL---KPNMMGTYIILSNIYAAEGKWEEFAK 537
            RV+       N++G  ++  ++YA  G  EE  K
Sbjct: 378 ARVMKTSIGNVNVVGNALV--SMYAESGCMEEARK 410


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/550 (36%), Positives = 309/550 (56%), Gaps = 3/550 (0%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
            NL+  Y + G ++EAR +FD + ++   SW  MIAGY        A  +F EM    V 
Sbjct: 67  NNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQ 126

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           PNA T   +LKAC  + +L     VH      GLE  + V  +L+ +Y  C  S++ AR 
Sbjct: 127 PNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCG-SINEARR 185

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           +F+++   + +SWT +I  YA SGNG     +  +M  EG + N  ++   + ACAS G 
Sbjct: 186 IFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGA 245

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           + + K +H   +  G   ++ V  +++ MY +   + DA   FD M  +D+++WN +I  
Sbjct: 246 LKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGA 305

Query: 290 YEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           + + G   E  ++F +M++E   P+   F SI+ ACA+  AL   +++H   +  GL+ +
Sbjct: 306 FAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVD 365

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           + +  AL+ MY+K G+I D++ +F  M  R++V+W +M+ G   HG G++A+E+F  M  
Sbjct: 366 VRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTA 425

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVK 467
            GV+PDR+ F+AVL+ACSHAGLVDEG   + +M   Y + P+     C+VDLLGRAGR+ 
Sbjct: 426 HGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLM 485

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527
           EA   I +M   PDE+ WG LLG+C+ +    LG+L A   L L P    TY++LSNIYA
Sbjct: 486 EAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKERLKLDPKNAATYVLLSNIYA 545

Query: 528 AEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIR 587
             GKW+  +  R +MR  G +KE G SWIEV +K+  F+  D      + +    + +I 
Sbjct: 546 EAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIHDFLVADSSHPECKEINESKDKVIE 605

Query: 588 HMNETAYEPD 597
            +    Y PD
Sbjct: 606 KIKAEGYIPD 615



 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 126/408 (30%), Positives = 219/408 (53%), Gaps = 3/408 (0%)

Query: 91  NCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVE 150
           N  ++A  V +  ++  +  ++F    VLK C   K L  A  VH   IK  +E + +V 
Sbjct: 7   NTLSEAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVM 66

Query: 151 NSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGV 210
           N+L+ VY  C   +  AR VF+ +  K+  SW  +I GY    +    + +F+EM  EGV
Sbjct: 67  NNLLHVYIECG-RLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGV 125

Query: 211 EMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQ 270
           + N  ++ I ++ACAS   + +GK +HA +   G  S++ V  ++L MY +   +++A +
Sbjct: 126 QPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARR 185

Query: 271 YFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAA 329
            FD +   D+I+W  +I  Y +SG+  E   +  +M+ E F PN  T+ SI+ ACA+  A
Sbjct: 186 IFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGA 245

Query: 330 LSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIG 389
           L   ++VH   +  GL+ ++ +  AL+ MYAK G+I D++ +F  M  RD+V+W  M+  
Sbjct: 246 LKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGA 305

Query: 390 YGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN 449
           +  HG G EA +LF +M   G +PD I+F+++L AC+ AG ++   K  +   D  +  +
Sbjct: 306 FAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVD 365

Query: 450 KEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
             +   +V +  ++G + +A  +   M  +   S W  ++    +H L
Sbjct: 366 VRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVS-WNAMISGLAQHGL 412



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 104/370 (28%), Positives = 195/370 (52%), Gaps = 8/370 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + T L++ Y   G I EAR +FD +   D++SWTVMI  Y       +A+ + ++M +  
Sbjct: 166 VGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEG 225

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
             PNA T  S+L AC    +L     VH  A+  GLE  + V  +L+ +YA    S+D+A
Sbjct: 226 FKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSG-SIDDA 284

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R+VF+ MK ++ VSW  +I  +A  G G+    +F +M  EG + +   F   + ACAS 
Sbjct: 285 RVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASA 344

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
           G + + K IH   +  G   ++ V  +++ MY +   + DA   FD M  +++++WN +I
Sbjct: 345 GALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMI 404

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR-RGL 345
           +G  + G   + L +F +M +    P+  TF ++++AC+    +  G+  +  + +  G+
Sbjct: 405 SGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGI 464

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           + +++  N ++D+  + G + +++     M+ D D  TW +++     +G+    +EL +
Sbjct: 465 EPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGN----VELGE 520

Query: 405 EMVKSGVRPD 414
            + K  ++ D
Sbjct: 521 LVAKERLKLD 530



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 121/256 (47%), Gaps = 12/256 (4%)

Query: 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIF 372
           + F +  ++  C     L   +QVH  I++  ++ N  + N L+ +Y +CG + +++ +F
Sbjct: 27  DSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVF 86

Query: 373 SEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD 432
             +  +   +W +M+ GY  H H ++A+ LF EM   GV+P+   +M +L AC+    + 
Sbjct: 87  DALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALK 146

Query: 433 EGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGAC 492
            G +    +    +  +  +   ++ + G+ G + EA  +  ++    D   W  ++GA 
Sbjct: 147 WGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNL-MNHDIISWTVMIGAY 205

Query: 493 KEHRLPNLGKLAALRVLDL-----KPNMMGTYIILSNIYAAEG--KWEEFAKFRKIMRGM 545
            +      GK A   +L +     KPN + TY+ + N  A+EG  KW +      +  G+
Sbjct: 206 AQ---SGNGKEAYRLMLQMEQEGFKPNAI-TYVSILNACASEGALKWVKRVHRHALDAGL 261

Query: 546 GSKKEVGMSWIEVRDK 561
                VG + +++  K
Sbjct: 262 ELDVRVGTALVQMYAK 277


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/592 (33%), Positives = 335/592 (56%), Gaps = 33/592 (5%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L   L+  Y     IE+AR LFD+M ERD+V+WTVMI GY      N++  +F +M    
Sbjct: 195 LQMALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEG 254

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDN 166
           V P+   + +V+ AC  + ++  A ++     ++  +  + +  +++D+YA C C+  ++
Sbjct: 255 VVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCV--ES 312

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR +F+ M+ KN +SW+ +I  Y + G G   L +F+ ML  G+  +  + +  + AC +
Sbjct: 313 AREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACIN 372

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              ++  + +HA    HG   NL V N ++  Y  +  L DA   FD M  +D ++W+ +
Sbjct: 373 CRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVM 432

Query: 287 IAGYEKSG-----------------------------SSECLNMFSKMKSERFSPNCFTF 317
           + G+ K G                             ++E L +F KM+ E   P+    
Sbjct: 433 VGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAM 492

Query: 318 TSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD 377
            +++ ACA L A+   + +   I R+    ++ L  A+IDM+AKCG +  +++IF  M +
Sbjct: 493 VTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEE 552

Query: 378 RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY 437
           +++++W++M+  YG HG G++A++LF  M++SG+ P++I  +++L ACSHAGLV+EGL++
Sbjct: 553 KNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRF 612

Query: 438 FKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR 496
           F  M  DY+V  + + Y CVVDLLGRAGR+ EA +LI+SM  + DE +WG  LGAC+ H+
Sbjct: 613 FSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHK 672

Query: 497 LPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWI 556
              L + AA  +L+L+P   G YI+LSNIYA  G+WE+ AK R +M     KK  G +WI
Sbjct: 673 DVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWI 732

Query: 557 EVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           EV +K   F   D     ++ +Y +L+ L   +    Y PD + ++HD++ E
Sbjct: 733 EVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEE 784



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 150/537 (27%), Positives = 258/537 (48%), Gaps = 75/537 (13%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++A  LI  Y     +++A  LFD M  RD VSW+VM+ G+     +   +  F E++R 
Sbjct: 114 VVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRC 173

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
              P+ +TL  V++AC+ +K+L  A                     L+D+Y   C  +++
Sbjct: 174 GARPDNYTLPFVIRACRDLKNLQMA---------------------LVDMYVK-CREIED 211

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR +F+ M+ ++ V+WT +I GYA  G     L +F++M  EGV  +  +    V ACA 
Sbjct: 212 ARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAK 271

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G +   ++I   + +  F  ++ +  +++DMY +  C+  A + FD M EK++I+W+ +
Sbjct: 272 LGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAM 331

Query: 287 IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           IA Y   G   + L++F  M S    P+  T  S++ AC     L+  +QVHA     G+
Sbjct: 332 IAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQASVHGM 391

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY--------------- 390
             NL +AN L+  Y+    + D+  +F  M  RD V+W+ M+ G+               
Sbjct: 392 LQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRE 451

Query: 391 ----GAH---------GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY 437
               GA          G+  E++ LFD+M + GV PD++  + V+ AC+  G + +    
Sbjct: 452 LIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKA--- 508

Query: 438 FKSMNDYNVNPNKE---IYG-CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACK 493
            ++++DY      +   I G  ++D+  + G V+ A E+   M  K   S W  ++ A  
Sbjct: 509 -RTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVIS-WSAMIAAYG 566

Query: 494 EHRLPNLGKLAALRVLDLKPNMMGTYI------ILSNIYAAE--GKWEEFAKFRKIM 542
            H     G+    + LDL P M+ + I      ++S +YA    G  EE  +F  +M
Sbjct: 567 YH---GQGR----KALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLM 616



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 191/420 (45%), Gaps = 64/420 (15%)

Query: 12  TFHCHKIPPIIKQSL--QSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLF 69
            F C K+  + K  +    +++   Q D         IL T +I  Y   G +E AR +F
Sbjct: 266 VFACAKLGAMHKARIIDDYIQRKKFQLD--------VILGTAMIDMYAKCGCVESAREIF 317

Query: 70  DEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLS 129
           D M E++V+SW+ MIA Y       +A  +F  M+ + + P+  TL+S+L AC   ++L+
Sbjct: 318 DRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLT 377

Query: 130 NAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGY 189
               VH  A   G+  ++ V N L+  Y+    ++D+A  +F+ M  ++ VSW+ ++ G+
Sbjct: 378 QVRQVHAQASVHGMLQNLIVANKLVHFYSY-YRALDDAYGLFDGMCVRDSVSWSVMVGGF 436

Query: 190 AHSGNGYGGLGVFKEMLL----------------------------EGVEMNPYSFSIAV 221
           A  G+     G F+E++                             EGV  +  +    V
Sbjct: 437 AKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVV 496

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
            ACA  G +   + I   + +  F  ++ +  +++DM+ +  C+  A + FD M EK++I
Sbjct: 497 FACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVI 556

Query: 282 TWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           +W+ +IA Y   G   + L++F  M      PN  T  S++ AC+           HAG+
Sbjct: 557 SWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACS-----------HAGL 605

Query: 341 VRRGL------------DGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMM 387
           V  GL              ++     ++D+  + G + ++ K+   M+ ++D   W + +
Sbjct: 606 VEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFL 665



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 135/290 (46%), Gaps = 34/290 (11%)

Query: 211 EMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQ 270
            +NP  +  A+  C +   V   + +HA    HG   N+ V N ++  Y  +  L DA  
Sbjct: 78  RLNPKFYISALVNCRNLTQV---RQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYG 134

Query: 271 YFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAA 329
            FD M  +D ++W+ ++ G+ K G    C   F ++      P+ +T   +I AC  L  
Sbjct: 135 LFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKN 194

Query: 330 LSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIG 389
           L                       AL+DMY KC  I D++ +F +M +RDLVTWT M+ G
Sbjct: 195 LQM---------------------ALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGG 233

Query: 390 YGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN 449
           Y   G   E++ LF++M + GV PD++  + V+ AC+  G + +     + ++DY     
Sbjct: 234 YAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKA----RIIDDYIQRKK 289

Query: 450 KE---IYG-CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            +   I G  ++D+  + G V+ A E+   M  K   S W  ++ A   H
Sbjct: 290 FQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVIS-WSAMIAAYGYH 338


>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
 gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
 gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
 gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 834

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/540 (37%), Positives = 314/540 (58%), Gaps = 7/540 (1%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI SY   G +  A  LF+ MP ++++SWT +++GY     H +A  +F  M +  + P+
Sbjct: 290 LIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPD 349

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNARLV 170
            +  SS+L +C  + +L     VH   IK  L    YV NSL+D+YA C C++  +AR V
Sbjct: 350 MYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLT--DARKV 407

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYG---GLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           F+     + V +  +I GY+  G  +     L +F++M    +  +  +F   +RA AS 
Sbjct: 408 FDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASL 467

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +   K IH  + K+G   ++   ++++D+Y    CL D+   FDEM  KDL+ WN++ 
Sbjct: 468 TSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMF 527

Query: 288 AGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           AGY ++S + E LN+F +++  R  P+ FTF +++ A   LA++  GQ+ H  +++RGL+
Sbjct: 528 AGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLE 587

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            N  + NAL+DMYAKCG+  D+ K F   + RD+V W S++  Y  HG GK+A+++ ++M
Sbjct: 588 CNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKM 647

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
           +  G+ P+ I F+ VL+ACSHAGLV++GLK F+ M  + + P  E Y C+V LLGRAGR+
Sbjct: 648 MSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPETEHYVCMVSLLGRAGRL 707

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            +A ELI+ MP KP   VW  LL  C +     L + AA   +   P   G++ +LSNIY
Sbjct: 708 NKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIY 767

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           A++G W E  K R+ M+  G  KE G SWI +  +V  F++ DK       +Y VL+ L+
Sbjct: 768 ASKGMWTEAKKVRERMKVEGVVKEPGRSWIGINKEVHIFLSKDKSHCKANQIYEVLDDLL 827



 Score =  255 bits (652), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 143/452 (31%), Positives = 238/452 (52%), Gaps = 6/452 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + T LI  Y  +G I+ AR +FD +PE+  V+WT MI+G         +  +F +++ + 
Sbjct: 185 VGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDN 244

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V P+ + LS+VL AC  +  L     +H   ++ GLE    + N L+D Y  C   +   
Sbjct: 245 VVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAH 304

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           +L FN M  KN +SWTTL++GY  +      + +F  M   G++ + Y+ S  + +CAS 
Sbjct: 305 KL-FNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASL 363

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             + FG  +HA  IK   G++  V NS++DMY + DCL+DA + FD     D++ +N +I
Sbjct: 364 HALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMI 423

Query: 288 AGYEKSGSS----ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            GY + G+     E LN+F  M+     P+  TF S++ A A+L +L   +Q+H  + + 
Sbjct: 424 EGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKY 483

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           GL+ ++   +ALID+Y+ C  + DS+ +F EM  +DLV W SM  GY      +EA+ LF
Sbjct: 484 GLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLF 543

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
            E+  S  RPD   F  ++TA  +   V  G ++   +    +  N  I   ++D+  + 
Sbjct: 544 LELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKC 603

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           G  ++A++   S   + D   W  ++ +   H
Sbjct: 604 GSPEDAHKAFDSAASR-DVVCWNSVISSYANH 634



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 133/454 (29%), Positives = 243/454 (53%), Gaps = 13/454 (2%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + L+  LI  Y   G +  AR +F++MPER++VSW+ M++       + ++  VF+E  R
Sbjct: 79  TYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWR 138

Query: 106 NEVN-PNAFTLSSVLKACKGMKSLSNAAL--VHGMAIKEGLEGSIYVENSLMDVYATCCI 162
              + PN + LSS ++AC G+       +  +    +K G +  +YV   L+D Y     
Sbjct: 139 TRKDSPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDG- 197

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
           ++D ARLVF+ +  K+ V+WTT+I+G    G  Y  L +F +++ + V  + Y  S  + 
Sbjct: 198 NIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLS 257

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           AC+   ++  GK IHA ++++G   +  +MN ++D Y +   +  A++ F+ M  K++I+
Sbjct: 258 ACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIIS 317

Query: 283 WNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           W T+++GY+++    E + +F+ M      P+ +  +SI+ +CA+L AL  G QVHA  +
Sbjct: 318 WTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTI 377

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY---GAHGHGKE 398
           +  L  +  + N+LIDMYAKC  ++D++K+F   +  D+V + +M+ GY   G      E
Sbjct: 378 KANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHE 437

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGL--KYFKSMNDYNVNPNKEIYGCV 456
           A+ +F +M    +RP  + F+++L A   A L   GL  +    M  Y +N +      +
Sbjct: 438 ALNIFRDMRFRLIRPSLLTFVSLLRAS--ASLTSLGLSKQIHGLMFKYGLNLDIFAGSAL 495

Query: 457 VDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490
           +D+      +K++  +   M  K D  +W  +  
Sbjct: 496 IDVYSNCYCLKDSRLVFDEMKVK-DLVIWNSMFA 528



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 183/343 (53%), Gaps = 9/343 (2%)

Query: 133 LVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHS 192
           +VHG  I  GLE   Y+ N L+++Y+     M  AR VF  M  +N VSW+T+++   H 
Sbjct: 65  VVHGQIIVWGLELDTYLSNILINLYSRAG-GMVYARKVFEKMPERNLVSWSTMVSACNHH 123

Query: 193 GNGYGGLGVFKEMLLEGVEM-NPYSFSIAVRACASTG----WVSFGKLIHAAVIKHGFGS 247
           G     L VF E      +  N Y  S  ++AC+       W+ F   + + ++K GF  
Sbjct: 124 GIYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRWMVFQ--LQSFLVKSGFDR 181

Query: 248 NLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSEC-LNMFSKMK 306
           ++ V   ++D Y +   +  A   FD + EK  +TW T+I+G  K G S   L +F ++ 
Sbjct: 182 DVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLM 241

Query: 307 SERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNIS 366
            +   P+ +  +++++AC+ L  L  G+Q+HA I+R GL+ + +L N LID Y KCG + 
Sbjct: 242 EDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVI 301

Query: 367 DSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS 426
            + K+F+ M ++++++WT+++ GY  +   KEA+ELF  M K G++PD     ++LT+C+
Sbjct: 302 AAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCA 361

Query: 427 HAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
               +  G +        N+  +  +   ++D+  +   + +A
Sbjct: 362 SLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDA 404



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 99/374 (26%), Positives = 184/374 (49%), Gaps = 10/374 (2%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCH---NQAWTVFVE 102
           S +  +LI  Y     + +AR +FD     DVV +  MI GY+        ++A  +F +
Sbjct: 385 SYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRD 444

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M    + P+  T  S+L+A   + SL  +  +HG+  K GL   I+  ++L+DVY+  C 
Sbjct: 445 MRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSN-CY 503

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            + ++RLVF++MK K+ V W ++  GY         L +F E+ L     + ++F+  V 
Sbjct: 504 CLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVT 563

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           A  +   V  G+  H  ++K G   N  + N++LDMY +     DA++ FD    +D++ 
Sbjct: 564 AAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVC 623

Query: 283 WNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           WN++I+ Y   G   + L M  KM SE   PN  TF  +++AC+    +  G +    ++
Sbjct: 624 WNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELML 683

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD-LVTWTSMMIGYGAHGHGKEAI 400
           R G++        ++ +  + G ++ ++++  +M  +   + W S++ G    G+    +
Sbjct: 684 RFGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGN----V 739

Query: 401 ELFDEMVKSGVRPD 414
           EL +   +  +  D
Sbjct: 740 ELAEHAAEMAILSD 753



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 159/314 (50%), Gaps = 7/314 (2%)

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
           F+  ++  AS   + +  ++H  +I  G   +  + N ++++Y R   +  A + F++M 
Sbjct: 47  FARLLQLRASDDLLHYQNVVHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMP 106

Query: 277 EKDLITWNTIIAGYEKSG-SSECLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQ 334
           E++L++W+T+++     G   E L +F +  ++ + SPN +  +S I AC+ L       
Sbjct: 107 ERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRWM 166

Query: 335 --QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA 392
             Q+ + +V+ G D ++ +   LID Y K GNI  ++ +F  + ++  VTWT+M+ G   
Sbjct: 167 VFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVK 226

Query: 393 HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEI 452
            G    +++LF ++++  V PD  +   VL+ACS    ++ G +    +  Y +  +  +
Sbjct: 227 MGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASL 286

Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLD 510
              ++D   + GRV  A++L   MP K   S W  LL   K++ L    +    ++    
Sbjct: 287 MNVLIDSYVKCGRVIAAHKLFNGMPNKNIIS-WTTLLSGYKQNALHKEAMELFTSMSKFG 345

Query: 511 LKPNMMGTYIILSN 524
           LKP+M     IL++
Sbjct: 346 LKPDMYACSSILTS 359


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/563 (35%), Positives = 329/563 (58%), Gaps = 12/563 (2%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  +   G +   R +FD + ER VV WT++I  Y      ++A  +F++M+ N   P+
Sbjct: 195 LIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPD 254

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC--CISMDNARL 169
            +TLSS+L AC  + S      +H +A++ GLE    V   L+D+YA      S+ NAR 
Sbjct: 255 QYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNARE 314

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGV-FKEMLLEGVEMNPYSFSIAVRACASTG 228
           VFN M   N ++WT L++GY   G+    + + F +ML EG+  N  ++S  ++ACA+ G
Sbjct: 315 VFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLG 374

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
               G+ IH   +K        V N+++ MY     + +A   FD++ EK++++++  + 
Sbjct: 375 DQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSGNLD 434

Query: 289 GYEKSGSSECLNMFSKMKSER--FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           G  +S      N +   + ER     + FTF S+I+A A++  L+ GQ++HA  ++ G  
Sbjct: 435 GDGRS------NTYQDYQIERMELGISTFTFGSLISAAASVGMLTKGQRLHALSLKAGFG 488

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            + A+ N+L+ MY++CG + D+ ++F EM+D ++++WTSM+ G   HG+   A+ELF +M
Sbjct: 489 SDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISGLAKHGYAARALELFHDM 548

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYN-VNPNKEIYGCVVDLLGRAGR 465
           + +GV+P+ + ++AVL+ACSHAGLV EG ++F+ M  ++ + P  E Y C+VDLLGR+G 
Sbjct: 549 IAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLIPRMEHYACMVDLLGRSGL 608

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           V++A + I  MP + D  VW  LLGACK H   ++G++AA  V+ L+P     Y++LSN+
Sbjct: 609 VEDALDFINEMPCQVDALVWKTLLGACKTHNNMDIGEIAANHVIQLEPQDPAPYVLLSNL 668

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           YA  G W++ A+ R +MR     KE G+SW+ V + +  F A D      + +Y  LE L
Sbjct: 669 YAEAGLWDQVARIRSLMRDKNLMKEKGLSWMHVDNTIHEFRAGDTSHPQAEEIYTKLETL 728

Query: 586 IRHMNETAYEPDIDCLIHDLEGE 608
           IR +    Y PD   ++HD+  E
Sbjct: 729 IREIKVMGYVPDTSVVLHDMSDE 751



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 137/271 (50%), Gaps = 13/271 (4%)

Query: 230 VSFGKLIHAAVIKHG--FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE--KDLITWNT 285
           +  G+ +   +++ G    ++  V NS+L +Y +   ++ A   FD M    +DL++W  
Sbjct: 63  IHLGRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTA 122

Query: 286 IIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAAC--ATLAALSCGQQVHAGIVR 342
           + +   ++G+ +E L +F +   E   PN FT  +   AC  + L  L+ G  V   + +
Sbjct: 123 MASCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLA-GGAVLGLVFK 181

Query: 343 RGLDG-NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
            G  G ++++  ALIDM+AK G++   +++F  + +R +V WT ++  Y   G+  EA+E
Sbjct: 182 LGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVE 241

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461
           LF +M+++G +PD+    ++L+AC+  G    G +         +  +  +   +VD+  
Sbjct: 242 LFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYA 301

Query: 462 RAGR---VKEAYELIKSMPFKPDESVWGPLL 489
           ++     +  A E+   MP K +   W  LL
Sbjct: 302 KSHNGQSLHNAREVFNRMP-KHNVMAWTALL 331



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 11/97 (11%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +  +L+  Y   G + +A  +FDEM + +V+SWT MI+G        +A  +F +M+   
Sbjct: 493 IGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISGLAKHGYAARALELFHDMIAAG 552

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLE 144
           V PN  T  +VL AC            H   +KEG E
Sbjct: 553 VKPNDVTYIAVLSACS-----------HAGLVKEGKE 578


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/595 (32%), Positives = 334/595 (56%), Gaps = 36/595 (6%)

Query: 47   ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            IL + L+  Y   G++EEA  +F  + ER+ VS+  ++AGY       +A  ++ +M   
Sbjct: 413  ILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSE 472

Query: 107  E-VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
            + + P+ FT +++L  C   ++ +    +H   I+  +  +I VE  L+ +Y+ C   ++
Sbjct: 473  DGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECG-RLN 531

Query: 166  NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
             A+ +FN M  +N  SW ++I GY  +G     L +FK+M L G++ + +S S  + +C 
Sbjct: 532  YAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCV 591

Query: 226  STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCL-------------------- 265
            S      G+ +H  ++++       +   ++DMY +   +                    
Sbjct: 592  SLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNV 651

Query: 266  -----------SDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPN 313
                       +DA   FD+M +++   WN+I+AGY   G   E  N F +M       +
Sbjct: 652  MVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYD 711

Query: 314  CFTFTSIIAACATLAALSCGQQVHAGIVRRG-LDGNLALANALIDMYAKCGNISDSQKIF 372
              T  +I+  C++L AL  G Q+H+ I+++G ++ ++ L  AL+DMY+KCG I+ ++ +F
Sbjct: 712  VLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVF 771

Query: 373  SEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD 432
              M+ +++V+W +M+ GY  HG  KEA+ L++EM K G+ P+ + F+A+L+ACSH GLV+
Sbjct: 772  DNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVE 831

Query: 433  EGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
            EGL+ F SM  DYN+    E Y C+VDLLGRAGR+++A E ++ MP +P+ S WG LLGA
Sbjct: 832  EGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGA 891

Query: 492  CKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEV 551
            C+ H+  ++G+LAA R+ +L P   G Y+I+SNIYAA G+W+E    R++M+  G KK+ 
Sbjct: 892  CRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDP 951

Query: 552  GMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
            G+SWIE+  ++  F A  K    T+ +Y  L  L        Y PD   ++ +++
Sbjct: 952  GVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGLGYIPDTSFILQNVK 1006



 Score =  224 bits (571), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 127/434 (29%), Positives = 236/434 (54%), Gaps = 6/434 (1%)

Query: 48  LATNLIKSYFDEGLIEE---ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
           L T ++  Y   G +++   AR LF+EMPER++ +W  MI  Y   + + +   ++  M 
Sbjct: 108 LMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMR 167

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
            +    + FT  SV+KAC  M+ +     +    +K GL  +++V  +L+D YA     M
Sbjct: 168 GSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGW-M 226

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           D+A    ++++  + V+W  +I GY    +     G+F  ML  GV  + ++F+ A+R C
Sbjct: 227 DDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVC 286

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
            +      GK +H+ +I  GF  +  V N+++DMY + D      + FDEM E++ +TWN
Sbjct: 287 GALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWN 346

Query: 285 TIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           +II+   + G  ++ L +F +M+   +  N F   SI+ A A LA +  G+++H  +VR 
Sbjct: 347 SIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRN 406

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
            L+ ++ L +AL+DMY+KCG + ++ ++F  + +R+ V++ +++ GY   G  +EA+EL+
Sbjct: 407 LLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELY 466

Query: 404 DEM-VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
            +M  + G++PD+  F  +LT C++    ++G +    +   N+  N  +   +V +   
Sbjct: 467 HDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSE 526

Query: 463 AGRVKEAYELIKSM 476
            GR+  A E+   M
Sbjct: 527 CGRLNYAKEIFNRM 540



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 126/487 (25%), Positives = 238/487 (48%), Gaps = 36/487 (7%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           KG + +   LI  Y      E    +FDEM ER+ V+W  +I+    F   N A  +F+ 
Sbjct: 308 KGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLR 367

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M  +    N F L S+L A  G+  +     +HG  ++  L   I + ++L+D+Y+ C +
Sbjct: 368 MQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGM 427

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAV 221
            ++ A  VF  +  +N+VS+  L+ GY   G     L ++ +M  E G++ + ++F+  +
Sbjct: 428 -VEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLL 486

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
             CA+    + G+ IHA +I+     N+ V   ++ MY     L+ A + F+ M E++  
Sbjct: 487 TLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAY 546

Query: 282 TWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           +WN++I GY+++G + E L +F +M+     P+CF+ +S++++C +L+    G+++H  I
Sbjct: 547 SWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFI 606

Query: 341 VRRGLDGNLALANALIDMYAKCGNI-------------------------------SDSQ 369
           VR  ++    L   L+DMYAKCG++                               +D++
Sbjct: 607 VRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAK 666

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
            +F +M  R+   W S++ GY   G  KE+   F EM++S +  D +  + ++  CS   
Sbjct: 667 NLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLP 726

Query: 430 LVDEGLKYFKSMNDYN-VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPL 488
            ++ G +    +     VN +  +   +VD+  + G + +A  +  +M  K   S W  +
Sbjct: 727 ALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVS-WNAM 785

Query: 489 LGACKEH 495
           +    +H
Sbjct: 786 ISGYSKH 792



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 112/392 (28%), Positives = 196/392 (50%), Gaps = 5/392 (1%)

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT--CCIS 163
           ++VNP  +  SS+++ C    S      +H   I  G     Y+   ++ +YA   C   
Sbjct: 67  SDVNPLPY--SSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDD 124

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +  AR +F +M  +N  +W T+I  YA   +    L ++  M   G   + ++F   ++A
Sbjct: 125 LCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKA 184

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C +   +   + + ++V+K G   NL V  +++D Y RF  + DA    DE+    ++TW
Sbjct: 185 CIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTW 244

Query: 284 NTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N +IAGY K  S  E   +F +M      P+ FTF S +  C  L +   G+QVH+ ++ 
Sbjct: 245 NAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIA 304

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            G  G+  + NALIDMYAKC +     K+F EM +R+ VTW S++      GH  +A+ L
Sbjct: 305 CGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVL 364

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           F  M +SG + +R    ++L A +    + +G +    +    +N +  +   +VD+  +
Sbjct: 365 FLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSK 424

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKE 494
            G V+EA+++ +S+  + + S    L G  +E
Sbjct: 425 CGMVEEAHQVFRSLLERNEVSYNALLAGYVQE 456


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/558 (36%), Positives = 321/558 (57%), Gaps = 6/558 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + ++T L+  Y     IE++  +F+ M E +VVSW  MI G+TS + +  A+ +F+ M+ 
Sbjct: 206 TFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMG 265

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             V P+A T   V KA   ++ ++ A  V G A++ G++ +  V  +L+D+ + C  S+ 
Sbjct: 266 EGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCG-SLQ 324

Query: 166 NARLVFND--MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
            AR +FN   +  + +  W  +I+GY  SG     L +F +M    + ++ Y++     A
Sbjct: 325 EARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNA 384

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSN-LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
            A+   +S GK +HA  IK G   N + + N++ + Y +   L D  + F+ M ++DLI+
Sbjct: 385 IAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLIS 444

Query: 283 WNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           W +++  Y +     + + +FS M++E  +PN FTF+S++ +CA L  L  GQQVH  I 
Sbjct: 445 WTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIIC 504

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           + GLD +  + +AL+DMYAKCG + D++K+F+ +S+ D V+WT+++ G+  HG   +A++
Sbjct: 505 KVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQ 564

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLL 460
           LF  MV+ GV P+ + F+ VL ACSH GLV+EGL+YFK M   Y + P  E Y C+VDLL
Sbjct: 565 LFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLL 624

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520
            R G + +A E I  MP +P+E VW  LLGAC+ H    LG+LAA ++L  K     TY+
Sbjct: 625 SRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKILSFKAENSATYV 684

Query: 521 ILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYG 580
           +LSN Y   G +++    R +M+  G KKE G SWI V   +  F A D+       +Y 
Sbjct: 685 LLSNTYIESGSYKDGLSLRHLMKEQGVKKEPGCSWISVNGTLHKFYAGDQQHPEKDKIYA 744

Query: 581 VLEMLIRHMNETAYEPDI 598
            LE L   +      PD+
Sbjct: 745 KLEELKLKLISLDDVPDL 762



 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 140/503 (27%), Positives = 258/503 (51%), Gaps = 9/503 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +L  ++  +Y     I+ A  LFD+M +R+  SWTV+IAG          +  F EM   
Sbjct: 106 VLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQ 165

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + P+ F  S +L+ C G+ S+    +VH   +  G     +V  +L+++YA     +++
Sbjct: 166 GIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAK-LQEIED 224

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           +  VFN M   N VSW  +ITG+  +        +F  M+ EGV  +  +F    +A   
Sbjct: 225 SYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGM 284

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE--MTEKDLITWN 284
              V+  K +    ++ G  SN  V  +++DM  +   L +A   F+   +T +    WN
Sbjct: 285 LRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWN 344

Query: 285 TIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +I+GY +SG +E  L +F+KM       + +T+ S+  A A L  LS G++VHA  ++ 
Sbjct: 345 AMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKS 404

Query: 344 GLDGN-LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
           GL+ N ++++NA+ + YAKCG++ D +K+F+ M DRDL++WTS++  Y       +AIE+
Sbjct: 405 GLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEI 464

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           F  M   G+ P++  F +VL +C++  L++ G +    +    ++ +K I   +VD+  +
Sbjct: 465 FSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAK 524

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNMMGTYI 520
            G + +A ++   +    D   W  ++    +H + +  L     +  L ++PN + T++
Sbjct: 525 CGCLGDAKKVFNRIS-NADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAV-TFL 582

Query: 521 ILSNIYAAEGKWEEFAKFRKIMR 543
            +    +  G  EE  ++ K+M+
Sbjct: 583 CVLFACSHGGLVEEGLQYFKLMK 605



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 164/315 (52%), Gaps = 6/315 (1%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEG--SIYVENSLMDVYATCCISMDNARLVFN 172
           L  +L+ C   + L  A  VHG  +K       S+ + N +   Y+ C   +D A  +F+
Sbjct: 71  LVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCS-DIDAACRLFD 129

Query: 173 DMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSF 232
            M  +N  SWT LI G A +G    G   F EM  +G+  + +++S  ++ C     +  
Sbjct: 130 QMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIEL 189

Query: 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEK 292
           G ++HA ++  GF S+  V  ++L+MY +   + D+ + F+ MTE ++++WN +I G+  
Sbjct: 190 GNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTS 249

Query: 293 SG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLAL 351
           +    +  ++F +M  E  +P+  TF  +  A   L  ++  ++V    +  G+D N  +
Sbjct: 250 NDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLV 309

Query: 352 ANALIDMYAKCGNISDSQKIFSE--MSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
             ALIDM +KCG++ +++ IF+   ++ R    W +M+ GY   G  ++A+ELF +M ++
Sbjct: 310 GTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQN 369

Query: 410 GVRPDRIVFMAVLTA 424
            +  D   + +V  A
Sbjct: 370 DIYLDHYTYCSVFNA 384


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/565 (35%), Positives = 324/565 (57%), Gaps = 13/565 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + + LI      G +  AR +FD + E+ VV WT++I+ Y    C  +A  +F++ + + 
Sbjct: 190 VGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLEDG 249

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI--SMD 165
             P+ +T+SS++ AC  + S+     +H +A++ GL     V   L+D+YA   I  +MD
Sbjct: 250 FEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQAMD 309

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGG-LGVFKEMLLEGVEMNPYSFSIAVRAC 224
            A  VF  M   + +SWT LI+GY  SG      + +F EML E ++ N  ++S  +++C
Sbjct: 310 YANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSILKSC 369

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           AS      G+ +HA VIK    S   V N+++ MY    C+ +A + F+++ E+ +I   
Sbjct: 370 ASISDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQLYERSMIP-- 427

Query: 285 TIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
            I  G +       + M   + S        TF S+I+A A++  L+ GQQ+HA  ++ G
Sbjct: 428 CITEGRDFPLDHRIVRMDVGISSS-------TFASLISAAASVGMLTKGQQLHAMSLKAG 480

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
              +  ++N+L+ MY++CG + D+ + F+E+ DR++++WTSM+ G   HG+ + A+ LF 
Sbjct: 481 FGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFH 540

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRA 463
           +M+ +GV+P+ + ++AVL+ACSH GLV EG +YF+SM  D+ + P  E Y C+VDLL R+
Sbjct: 541 DMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARS 600

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G VKEA E I  MP K D  VW  LLGAC+ H    +G++ A  V++L+P     Y++LS
Sbjct: 601 GIVKEALEFINEMPLKADALVWKTLLGACRSHDNIEVGEITAKNVVELEPRDPAPYVLLS 660

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           N+YA  G W+E A+ R  MR     KE G+SW+EV +    F A D      Q +YG L+
Sbjct: 661 NLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLD 720

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGE 608
            L+R +    Y PD   ++HD+  E
Sbjct: 721 TLVRQIKGMGYVPDTSIVLHDMSDE 745



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 117/230 (50%), Gaps = 7/230 (3%)

Query: 213 NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGF-GSNLPVMNSILDMYCRFDCLSDANQY 271
           +P   S  + A A  G +  G+ +H  +++      +  V NS+L +Y R   ++ A   
Sbjct: 47  HPSDVSALLAAAARAGDLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNV 106

Query: 272 FDEMTE-KDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAA 329
           FD M   +D+++W  + +   ++G+    L +  +M      PN +T  +   AC     
Sbjct: 107 FDGMRGLRDIVSWTAMASCLARNGAERGSLLLIGEMLESGLLPNAYTLCAAAHACFP-HE 165

Query: 330 LSCGQQVHAGIV--RRGLDG-NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSM 386
           L C        +  + GL G ++A+ +ALIDM A+ G+++ ++K+F  + ++ +V WT +
Sbjct: 166 LYCLVGGVVLGLVHKMGLWGTDVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLL 225

Query: 387 MIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
           +  Y      +EA+ELF + ++ G  PDR    ++++AC+  G V  GL+
Sbjct: 226 ISRYVQGECAEEAVELFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQ 275


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 220/615 (35%), Positives = 334/615 (54%), Gaps = 45/615 (7%)

Query: 36  SDPPLIPKGPSILATN-LIKSYFDEGLIEEARTLFDEMP-----ERDVVSWTVMIAGYTS 89
           SD  L    P  +  N +I  Y   G  EEA   F EM      + +VVSWT +IAG   
Sbjct: 280 SDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQ 339

Query: 90  FNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIK-EGLEGSIY 148
                +A +VF +MV   V PN+ T++S + AC  +  L +   +HG  IK E L+  + 
Sbjct: 340 NGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLL 399

Query: 149 VENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE 208
           V NSL+D YA C  S++ AR  F  +K  + VSW  ++ GYA  G+    + +  EM  +
Sbjct: 400 VGNSLVDYYAKC-RSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQ 458

Query: 209 GVE---------------------------------MNPYSFSI--AVRACASTGWVSFG 233
           G+E                                 M+P + +I  A+ AC     +  G
Sbjct: 459 GIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLG 518

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
           K IH  V+++    +  V ++++ MY   D L  A   F E++ +D++ WN+II+   +S
Sbjct: 519 KEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQS 578

Query: 294 GSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
           G S   L++  +M       N  T  S + AC+ LAAL  G+++H  I+R GLD    + 
Sbjct: 579 GRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFIL 638

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
           N+LIDMY +CG+I  S++IF  M  RDLV+W  M+  YG HG G +A+ LF +    G++
Sbjct: 639 NSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLK 698

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471
           P+ I F  +L+ACSH+GL++EG KYFK M  +Y ++P  E Y C+VDLL RAG+  E  E
Sbjct: 699 PNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLE 758

Query: 472 LIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK 531
            I+ MPF+P+ +VWG LLGAC+ H  P+L + AA  + +L+P   G Y++++NIY+A G+
Sbjct: 759 FIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGR 818

Query: 532 WEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNE 591
           WE+ AK R +M+  G  K  G SWIEV+ K+  F+  D      + +   +E L   + E
Sbjct: 819 WEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKE 878

Query: 592 TAYEPDIDCLIHDLE 606
             Y PD + ++ D++
Sbjct: 879 IGYVPDTNFVLQDVD 893



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 155/610 (25%), Positives = 265/610 (43%), Gaps = 119/610 (19%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            L + L++ Y   G +E+AR +FD+M ER+V SWT ++  Y     + +   +F  MV  
Sbjct: 125 FLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNE 184

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V P+ F    V KAC  +K+      V+   +  G EG+  V+ S++D++  C   MD 
Sbjct: 185 GVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCG-RMDI 243

Query: 167 ARLVFNDMKWKN-----------------------------------DVSWTTLITGYAH 191
           AR  F ++++K+                                    V+W  +I+GYA 
Sbjct: 244 ARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQ 303

Query: 192 SG----------------------------------NGYG--GLGVFKEMLLEGVEMNPY 215
           SG                                  NGY    L VF++M+LEGV+ N  
Sbjct: 304 SGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSI 363

Query: 216 SFSIAVRACASTGWVSFGKLIHAAVIK-HGFGSNLPVMNSILDMYCRFDCLSDANQYFDE 274
           + + AV AC +   +  G+ IH   IK     S+L V NS++D Y +   +  A + F  
Sbjct: 364 TIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGM 423

Query: 275 MTEKDLITWNTIIAGYEKSGSSE------------------------------------C 298
           + + DL++WN ++AGY   GS E                                     
Sbjct: 424 IKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAA 483

Query: 299 LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDM 358
           L  F +M S    PN  T +  +AAC  +  L  G+++H  ++R  ++ +  + +ALI M
Sbjct: 484 LEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISM 543

Query: 359 YAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVF 418
           Y+ C ++  +  +FSE+S RD+V W S++      G    A++L  EM  S V  + +  
Sbjct: 544 YSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTM 603

Query: 419 MAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPF 478
           ++ L ACS    + +G +  + +    ++    I   ++D+ GR G ++++  +   MP 
Sbjct: 604 VSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMP- 662

Query: 479 KPDESVWGPLLGACKEH--RLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA---EGKWE 533
           + D   W  ++     H   +  +      R + LKPN    +I  +N+ +A    G  E
Sbjct: 663 QRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPN----HITFTNLLSACSHSGLIE 718

Query: 534 EFAKFRKIMR 543
           E  K+ K+M+
Sbjct: 719 EGWKYFKMMK 728



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 165/328 (50%), Gaps = 11/328 (3%)

Query: 186 ITGYAHSGNGY-GGLGVFKEMLLEGVEM-NPYS----FSIAVRACASTGWVSFGKLIHAA 239
           ITG++  G+ +  G+     MLL  +++ NP      ++  ++ C     +  G  +HA 
Sbjct: 55  ITGFSGGGSVHRNGVLNNAAMLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQ 114

Query: 240 VIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SEC 298
           ++ +G      + + +L++YC+  C+ DA + FD+M+E+++ +W  I+  Y   G   E 
Sbjct: 115 LVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEET 174

Query: 299 LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDM 358
           + +F  M +E   P+ F F  +  AC+ L     G+ V+  ++  G +GN  +  +++DM
Sbjct: 175 IKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDM 234

Query: 359 YAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVF 418
           + KCG +  +++ F E+  +D+  W  M+ GY + G  K+A++   +M  SGV+PD++ +
Sbjct: 235 FIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTW 294

Query: 419 MAVLTACSHAGLVDEGLKYFKSMNDY-NVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMP 477
            A+++  + +G  +E  KYF  M    +  PN   +  ++    + G   EA  + + M 
Sbjct: 295 NAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMV 354

Query: 478 F---KPDESVWGPLLGACKEHRLPNLGK 502
               KP+       + AC    L   G+
Sbjct: 355 LEGVKPNSITIASAVSACTNLSLLRHGR 382



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 156/326 (47%), Gaps = 44/326 (13%)

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA-TCCISMDNARLVFNDM 174
           +S+L+ C+ + +L     VH   +  G++   ++ + L++VY  T C+  ++AR +F+ M
Sbjct: 93  ASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCV--EDARRMFDKM 150

Query: 175 KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGK 234
             +N  SWT ++  Y   G+    + +F  M+ EGV  + + F    +AC+       GK
Sbjct: 151 SERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGK 210

Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG 294
            ++  ++  GF  N  V  SILDM+ +   +  A ++F+E+  KD+  WN +++GY   G
Sbjct: 211 DVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKG 270

Query: 295 S-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353
              + L   S MK     P+  T+                                   N
Sbjct: 271 EFKKALKCISDMKLSGVKPDQVTW-----------------------------------N 295

Query: 354 ALIDMYAKCGNISDSQKIFSEMS-----DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           A+I  YA+ G   ++ K F EM        ++V+WT+++ G   +G+  EA+ +F +MV 
Sbjct: 296 AIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVL 355

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEG 434
            GV+P+ I   + ++AC++  L+  G
Sbjct: 356 EGVKPNSITIASAVSACTNLSLLRHG 381



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 123/241 (51%), Gaps = 4/241 (1%)

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           + SI+  C  L  L  G QVHA +V  G+D    L + L+++Y + G + D++++F +MS
Sbjct: 92  YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMS 151

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
           +R++ +WT++M  Y   G  +E I+LF  MV  GVRPD  VF  V  ACS       G  
Sbjct: 152 ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKD 211

Query: 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA--CKE 494
            +  M       N  + G ++D+  + GR+  A    + + FK D  +W  ++     K 
Sbjct: 212 VYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK-DVFMWNIMVSGYTSKG 270

Query: 495 HRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMS 554
                L  ++ +++  +KP+ +    I+S  YA  G++EE +K+   M G+   K   +S
Sbjct: 271 EFKKALKCISDMKLSGVKPDQVTWNAIISG-YAQSGQFEEASKYFLEMGGLKDFKPNVVS 329

Query: 555 W 555
           W
Sbjct: 330 W 330


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/536 (36%), Positives = 311/536 (58%), Gaps = 23/536 (4%)

Query: 63  EEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKAC 122
           E A  LFD++ +RDV+SW  MI+GY S     +   ++ +M+   ++ +  T+ SVL  C
Sbjct: 64  ESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGC 123

Query: 123 KGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSW 182
               +LS    VH +AIK   E  I   N+L+D+Y+ C   +D A  VF  M  +N VSW
Sbjct: 124 AKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCG-DLDGALRVFEKMGERNVVSW 182

Query: 183 TTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIK 242
           T++I GY   G   G + + ++M  EGV+++  + +  + ACA +G +  GK +H  +  
Sbjct: 183 TSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKA 242

Query: 243 HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMF 302
           +   SNL V N+++DMY +   +  AN  F  M  KD+I+WNT++               
Sbjct: 243 NNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVG-------------- 288

Query: 303 SKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362
                    P+  T   I+ ACA+L+AL  G+++H  I+R G   +  +ANAL+D+Y KC
Sbjct: 289 ------ELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKC 342

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
           G +  ++ +F  +  +DLV+WT M+ GYG HG+G EAI  F+EM  +G+ PD + F+++L
Sbjct: 343 GVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISIL 402

Query: 423 TACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481
            ACSH+GL+++G ++F  M ND+N+ P  E Y C+VDLL R G + +AY+ I+++P  PD
Sbjct: 403 YACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPD 462

Query: 482 ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKI 541
            ++WG LL  C+ +    L +  A RV +L+P   G Y++L+NIYA   KWEE  + R+ 
Sbjct: 463 ATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREK 522

Query: 542 MRGMGSKKEVGMSWIEVRDKVCGFIA-NDKMGSHTQYVYGVLEMLIRHMNETAYEP 596
           +   G +K  G SWIE++ +V  F++ N+    H++ +  +L+ + R M E  Y P
Sbjct: 523 IGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFP 578



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 101/358 (28%), Positives = 175/358 (48%), Gaps = 51/358 (14%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
            +  L+  Y   G ++ A  +F++M ER+VVSWT MIAGYT     + A  +  +M +  
Sbjct: 150 FSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEG 209

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V  +   ++S+L AC    SL N   VH       +  +++V N+LMD+YA C  SM+ A
Sbjct: 210 VKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCG-SMEGA 268

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA--VRACA 225
             VF+ M  K+ +SW T++                        E+ P S ++A  + ACA
Sbjct: 269 NSVFSTMVVKDIISWNTMVG-----------------------ELKPDSRTMACILPACA 305

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           S   +  GK IH  ++++G+ S+  V N+++D+Y +   L  A   FD +  KDL++W  
Sbjct: 306 SLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTV 365

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +IAGY   G  +E +  F++M+     P+  +F SI+ AC+           H+G++ +G
Sbjct: 366 MIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACS-----------HSGLLEQG 414

Query: 345 ------------LDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIG 389
                       ++  L     ++D+ ++ GN+S + K    +    D   W +++ G
Sbjct: 415 WRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCG 472



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 16/103 (15%)

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
           L+  YA CG++ + +++F  M  +++  W  M+  Y   G  KE+I LF  MV+ G+   
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 61

Query: 415 R----------------IVFMAVLTACSHAGLVDEGLKYFKSM 441
           R                I + ++++     GL + GL  +K M
Sbjct: 62  RSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQM 104


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 223/680 (32%), Positives = 363/680 (53%), Gaps = 81/680 (11%)

Query: 5   RLLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPK---GPSILATNLIKSYFDEGL 61
           RLL+ AA  H    P +  + L     S   + P ++ +   GP + AT+L+ +Y   G 
Sbjct: 47  RLLT-AALLHDPSHPHLTLRLLHLYTLSPDLATPAVLFRADPGP-VAATSLVSAYAVAGR 104

Query: 62  IEEARTLFDEMP--ERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE--VNPNAFTLSS 117
           + ++   FD +P   RD V    MI+ +   +    A +VF  ++ ++  + P+ ++ +S
Sbjct: 105 LRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLLASDDSLRPDDYSFTS 164

Query: 118 VLKACKGMKSL--SNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS--MDNARLVFND 173
           +L A   M  L  S+   +H    K G    + V N+L+ +Y  C       +AR V ++
Sbjct: 165 LLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDE 224

Query: 174 MKWKNDVSWTT-------------------------------LITGYAHSGNGYGGLGVF 202
           M  K++++WTT                               +I+GY  SG       +F
Sbjct: 225 MPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELF 284

Query: 203 KEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFG----SNLPVMNSILDM 258
           + M+ + +  + ++F+  + ACA+ G+   GK +H   I+        + LPV N+++ +
Sbjct: 285 RRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTL 344

Query: 259 YCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG------------------------ 294
           Y +   ++ A + FD MT KD+++WNTI++GY +SG                        
Sbjct: 345 YSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMV 404

Query: 295 --------SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
                   + + L +F++M+SE   P  +T+   +AAC  L AL  G+Q+HA +V+ G +
Sbjct: 405 SGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFE 464

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            + +  NAL+ MYA+CG + D++ +F  M + D V+W +M+   G HGHG+EA+ELFD+M
Sbjct: 465 ASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQM 524

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGR 465
           V  G+ PDRI F+ +LTAC+HAGLVD+G +YF+SM  D+ ++P ++ Y  ++DLLGRAGR
Sbjct: 525 VAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGR 584

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           + EA +LIK+MPF+P  ++W  +L  C+ +    LG  AA ++  + P   GTYI+LSN 
Sbjct: 585 IGEARDLIKTMPFEPTPAIWEAILSGCRINGDMELGAYAADQLFKMVPEHDGTYILLSNT 644

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           Y+A G+W + A+ RK+MR  G KKE G SWIEV +KV  F+  D        VY  LEM+
Sbjct: 645 YSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGNKVHVFLVGDTKHPDAHEVYRFLEMV 704

Query: 586 IRHMNETAYEPDIDCLIHDL 605
              M +  Y PD    + D+
Sbjct: 705 GAKMRKLGYVPDTKFALQDM 724


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/566 (36%), Positives = 318/566 (56%), Gaps = 7/566 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I   +L+  Y   G IE A  +F+     +VV W +M+  Y   +   +++ +F +M   
Sbjct: 281 ITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQAT 340

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT--CCISM 164
            ++PN FT   +L+ C     +     +H ++IK G E  +YV   L+D+Y+   C   +
Sbjct: 341 GIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRC---L 397

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           D AR +   ++ ++ VSWT++I GY         L  FKEM   GV  +    + A  AC
Sbjct: 398 DKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASAC 457

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           A    +  G  IHA V   G+ +++ + N+++++Y R     +A   F E+  KD ITWN
Sbjct: 458 AGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWN 517

Query: 285 TIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +I+G+ +S   E  L +F KM       N FTF S I+A A LA +  G+QVH   V+ 
Sbjct: 518 GLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKT 577

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G      +ANALI +Y KCG+I D++ IFSEMS R+ V+W +++     HG G EA++LF
Sbjct: 578 GHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLF 637

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGR 462
           D+M + G++P+ + F+ VL ACSH GLV+EGL YFKSM N Y +NP  + Y CVVD+LGR
Sbjct: 638 DQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGR 697

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AG++  A   +  MP   +  +W  LL ACK H+   +G+LAA  +L+L+P+   +Y++L
Sbjct: 698 AGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLL 757

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           SN YA  GKW    + RK+M+  G +KE G SWIEV++ V  F   D++   +  +Y  L
Sbjct: 758 SNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFL 817

Query: 583 EMLIRHMNETAYEPDIDCLIHDLEGE 608
             L   +++  Y+ +   L H+ E E
Sbjct: 818 SELNDRLSKIGYKQENPNLFHEKEQE 843



 Score =  243 bits (619), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 152/525 (28%), Positives = 262/525 (49%), Gaps = 9/525 (1%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y   GL+ +AR +F E+  RD VSW  M++GY       +A+ ++ +M    V P 
Sbjct: 84  LIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPT 143

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
            + LSSVL AC   K  +   ++H    K+      +V N+L+ +Y     S   A  VF
Sbjct: 144 PYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFG-SFKLAERVF 202

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
            DM + + V++ TLI+G+A  G+G   L +F EM L G+  +  + +  + ACAS G + 
Sbjct: 203 CDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQ 262

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY- 290
            GK +H+ ++K G   +     S+LD+Y +   +  A+  F+     +++ WN ++  Y 
Sbjct: 263 KGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYG 322

Query: 291 EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           + S  ++   +F +M++    PN FT+  I+  C     +  G+Q+H+  ++ G + ++ 
Sbjct: 323 QISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMY 382

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           ++  LIDMY+K   +  ++KI   +  RD+V+WTSM+ GY  H   +EA+  F EM   G
Sbjct: 383 VSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCG 442

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470
           V PD I   +  +AC+    + +GL+    +       +  I+  +V+L  R GR +EA+
Sbjct: 443 VWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAF 502

Query: 471 ELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA--- 527
            L + +  K DE  W  L+    + RL     +  +++          +  +S I A   
Sbjct: 503 SLFREIDHK-DEITWNGLISGFGQSRLYEQALMVFMKMSQAGAK-YNVFTFISAISALAN 560

Query: 528 -AEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKM 571
            A+ K  +    R +  G  S+ EV  + I +  K CG I + KM
Sbjct: 561 LADIKQGKQVHGRAVKTGHTSETEVANALISLYGK-CGSIEDAKM 604



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 196/383 (51%), Gaps = 4/383 (1%)

Query: 115 LSSVLKACKGMKSLSNAAL-VHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFND 173
           L+  L+AC+G  +     L +H  ++  GL     + N L+D+YA   +    AR VF +
Sbjct: 45  LTCALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVW-QARQVFKE 103

Query: 174 MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG 233
           +  ++ VSW  +++GYA  G G     ++ +M    V   PY  S  + AC      + G
Sbjct: 104 LSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQG 163

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
           ++IHA V K  F S   V N+++ +Y  F     A + F +M   D +T+NT+I+G+ + 
Sbjct: 164 RMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQC 223

Query: 294 GSSEC-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
           G  EC L +F +M+     P+C T  S++AACA++  L  G+Q+H+ +++ G+  +    
Sbjct: 224 GHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITE 283

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
            +L+D+Y KCG+I  +  IF+     ++V W  M++ YG      ++ E+F +M  +G+ 
Sbjct: 284 GSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIH 343

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
           P++  +  +L  C+  G ++ G +            +  + G ++D+  +   + +A ++
Sbjct: 344 PNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKI 403

Query: 473 IKSMPFKPDESVWGPLLGACKEH 495
           ++ M  K D   W  ++    +H
Sbjct: 404 LE-MLEKRDVVSWTSMIAGYVQH 425



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 127/305 (41%), Gaps = 46/305 (15%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A  LI  Y   G IE+A+ +F EM  R+ VSW  +I   +      +A  +F +M +  
Sbjct: 585 VANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEG 644

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLE-----GSIYVENSLMDVYATCCI 162
           + PN  T   VL AC            H   ++EGL       ++Y  N + D YA C +
Sbjct: 645 LKPNDVTFIGVLAACS-----------HVGLVEEGLSYFKSMSNVYGLNPIPDHYA-CVV 692

Query: 163 -------SMDNARLVFNDMK-WKNDVSWTTLITG-YAHSGNGYGGLGVFKEMLLEGVEMN 213
                   +D AR   ++M    N + W TL++    H     G L    + LLE    +
Sbjct: 693 DILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAA--KHLLELEPHD 750

Query: 214 PYSFSIAVRACASTG-WVS---FGKLIHAAVIKHGFGSN-LPVMNSILDMYC--RFDCLS 266
             S+ +   A A TG W +     K++    I+   G + + V N++   +   R   LS
Sbjct: 751 SASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLS 810

Query: 267 DA-NQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACA 325
           D   ++  E+ ++          GY++    E  N+F + + E+  P  F  +  +A   
Sbjct: 811 DQIYKFLSELNDR------LSKIGYKQ----ENPNLFHEKEQEQKDPTAFVHSEKLAVAF 860

Query: 326 TLAAL 330
            L  L
Sbjct: 861 GLMTL 865


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/560 (36%), Positives = 320/560 (57%), Gaps = 7/560 (1%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPE--RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           L+  Y   G I     LF+  P    +VV+WT +I   +  N   QA T F  M    + 
Sbjct: 138 LLLLYAKCGSIHHTLLLFNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIY 197

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           PN FT S++L AC     LS    +H +  K       +V  +L+D+YA C  SM  A  
Sbjct: 198 PNHFTFSAILPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCG-SMLLAEN 256

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           VF++M  +N VSW ++I G+  +      +GVF+E+L  G +    S S  + ACA    
Sbjct: 257 VFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREVLSLGPDQ--VSISSVLSACAGLVE 314

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           + FGK +H +++K G    + V NS++DMYC+     DA + F    ++D++TWN +I G
Sbjct: 315 LDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMG 374

Query: 290 -YEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
            +      +    F  M  E   P+  +++S+  A A++AAL+ G  +H+ +++ G   N
Sbjct: 375 CFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKN 434

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
             ++++L+ MY KCG++ D+ ++F E  + ++V WT+M+  +  HG   EAI+LF+EM+ 
Sbjct: 435 SRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLN 494

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVK 467
            GV P+ I F++VL+ACSH G +D+G KYF SM N +N+ P  E Y C+VDLLGR GR++
Sbjct: 495 EGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYACMVDLLGRVGRLE 554

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527
           EA   I+SMPF+PD  VWG LLGAC +H    +G+  A R+  L+P+  G Y++LSNIY 
Sbjct: 555 EACRFIESMPFEPDSLVWGALLGACGKHANVEMGREVAERLFKLEPDNPGNYMLLSNIYI 614

Query: 528 AEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIR 587
             G  EE  + R++M   G +KE G SWI+V+++   F AND+  S TQ +YG+L+ L  
Sbjct: 615 RHGMLEEADEVRRLMGINGVRKESGCSWIDVKNRTFVFNANDRSHSRTQEIYGMLQKLKE 674

Query: 588 HMNETAYEPDIDCLIHDLEG 607
            +    Y  +     + +EG
Sbjct: 675 LIKRRGYVAETQFATNSVEG 694



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 121/419 (28%), Positives = 212/419 (50%), Gaps = 13/419 (3%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM 174
           L  +L     +KSL +A  +H   +      S+   N+L+ +YA C  S+ +  L+FN  
Sbjct: 100 LKHLLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCG-SIHHTLLLFNTY 158

Query: 175 KW--KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSF 232
                N V+WTTLI   + S   +  L  F  M   G+  N ++FS  + ACA    +S 
Sbjct: 159 PHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSE 218

Query: 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEK 292
           G+ IHA + KH F ++  V  ++LDMY +   +  A   FDEM  ++L++WN++I G+ K
Sbjct: 219 GQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVK 278

Query: 293 SG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLAL 351
           +      + +F ++ S    P+  + +S+++ACA L  L  G+QVH  IV+RGL G + +
Sbjct: 279 NKLYGRAIGVFREVLS--LGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYV 336

Query: 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411
            N+L+DMY KCG   D+ K+F    DRD+VTW  M++G     + ++A   F  M++ GV
Sbjct: 337 KNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGV 396

Query: 412 RPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471
            PD   + ++  A +    + +G      +       N  I   +V + G+ G + +AY+
Sbjct: 397 EPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQ 456

Query: 472 LIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD--LKPNMMGTYIILSNIYAA 528
           + +    + +   W  ++    +H   N     A+++ +  L   ++  YI   ++ +A
Sbjct: 457 VFRETK-EHNVVCWTAMITVFHQHGCAN----EAIKLFEEMLNEGVVPEYITFVSVLSA 510



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 125/471 (26%), Positives = 223/471 (47%), Gaps = 37/471 (7%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            +AT L+  Y   G +  A  +FDEMP R++VSW  MI G+     + +A  VF E++  
Sbjct: 236 FVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREVL-- 293

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + P+  ++SSVL AC G+  L     VHG  +K GL G +YV+NSL+D+Y  C +  D 
Sbjct: 294 SLGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDA 353

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
            +L F     ++ V+W  +I G     N       F+ M+ EGVE +  S+S    A AS
Sbjct: 354 TKL-FCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASAS 412

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              ++ G +IH+ V+K G   N  + +S++ MY +   + DA Q F E  E +++ W  +
Sbjct: 413 IAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAM 472

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR-RG 344
           I  + + G ++E + +F +M +E   P   TF S+++AC+    +  G +    +     
Sbjct: 473 ITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHN 532

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEAIELF 403
           +   L     ++D+  + G + ++ +    M  + D + W +++   G H + +   E+ 
Sbjct: 533 IKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGREVA 592

Query: 404 DEMVKSGVRPDRI-VFMAVLTACSHAGLVDEGLKYFKSM--------------------- 441
           + + K  + PD    +M +       G+++E  +  + M                     
Sbjct: 593 ERLFK--LEPDNPGNYMLLSNIYIRHGMLEEADEVRRLMGINGVRKESGCSWIDVKNRTF 650

Query: 442 ----NDYNVNPNKEIYGCVV---DLLGRAGRVKEAYELIKSMPFKPDESVW 485
               ND + +  +EIYG +    +L+ R G V E      S+    ++S+W
Sbjct: 651 VFNANDRSHSRTQEIYGMLQKLKELIKRRGYVAETQFATNSVEGSEEQSLW 701



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 53/106 (50%), Gaps = 9/106 (8%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S ++++L+  Y   G + +A  +F E  E +VV WT MI  +    C N+A  +F EM+ 
Sbjct: 435 SRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLN 494

Query: 106 NEVNPNAFTLSSVLKACK-------GMKSLSNAALVHGMAIKEGLE 144
             V P   T  SVL AC        G K  ++ A VH   IK GLE
Sbjct: 495 EGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHN--IKPGLE 538


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/544 (35%), Positives = 318/544 (58%), Gaps = 3/544 (0%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           +  LF+ +P  ++ S+  +I GY   +   +A  +F  + ++ +  +  +LS   +AC  
Sbjct: 266 SNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAV 325

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTT 184
           +K       VHG+++K   + +I V N+++D+Y  C  ++  A LVF +M  ++ VSW  
Sbjct: 326 IKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCG-ALVEACLVFEEMVSRDAVSWNA 384

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG 244
           +I  +  +GN    L +F  ML  G+E + +++   ++ACA    ++ G  IH  +IK  
Sbjct: 385 IIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSR 444

Query: 245 FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE-KSGSSECLNMFS 303
            G +  V  +++DMY +   +  A +  D + E+ +++WN II+G+  +  S E    FS
Sbjct: 445 MGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFS 504

Query: 304 KMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG 363
           KM      P+ FT+ +I+  CA L  +  G+Q+HA I+++ L  +  +++ L+DMY+KCG
Sbjct: 505 KMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCG 564

Query: 364 NISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLT 423
           N+ D Q IF +  +RD VTW +M+ GY  HG G+EA+++F+ M    V+P+   F+AVL 
Sbjct: 565 NMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLR 624

Query: 424 ACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDE 482
           AC H GLV++GL YF SM ++Y ++P  E Y CVVD++GR+G+V +A ELI+ MPF+ D 
Sbjct: 625 ACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADA 684

Query: 483 SVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIM 542
            +W  LL  CK H    + + AA  +L L+P     Y++LSNIYA  G W E  K RK+M
Sbjct: 685 VIWRTLLSXCKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMM 744

Query: 543 RGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLI 602
           R  G KKE G SWIE++ +V  F+  DK    ++ +Y  L++L   M    Y PD D ++
Sbjct: 745 RFNGLKKEPGCSWIEIKSEVHAFLVGDKAHPRSKEIYENLDVLTDEMKWVGYMPDTDFIL 804

Query: 603 HDLE 606
           +D E
Sbjct: 805 NDDE 808



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 144/544 (26%), Positives = 248/544 (45%), Gaps = 77/544 (14%)

Query: 45  PSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF--- 100
           P++  TN LI+ Y     +  A  +FD MP+RD VSW  M+ GY        A  +F   
Sbjct: 75  PTVFVTNCLIQMYIKCSDLGFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAM 134

Query: 101 ------------VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIY 148
                         M R     +  T + VLK+C  ++       +HG+A+K G +  + 
Sbjct: 135 PGTGCGVVELFDFRMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVV 194

Query: 149 VENSLMDV---------------------------------------------------- 156
             ++L+D+                                                    
Sbjct: 195 TGSALLDMYAKCCVQNDDLRGGLELFKEMQKAGVGALQLHGHALKTDFGTDVVIGTATLD 254

Query: 157 -YATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPY 215
            Y  C    D +  +FN +   N  S+  +I GYA S  G   LG+F+ +   G+ ++  
Sbjct: 255 MYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEV 314

Query: 216 SFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM 275
           S S A RACA       G  +H   +K    SN+ V N+ILDMY +   L +A   F+EM
Sbjct: 315 SLSGAXRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEM 374

Query: 276 TEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334
             +D ++WN IIA +E++G+ E  L++F  M      P+ FT+ S++ ACA   AL+CG 
Sbjct: 375 VSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGM 434

Query: 335 QVHAGIV--RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA 392
           ++H  I+  R GLD  + +  ALIDMY+KCG +  ++K+   ++++ +V+W +++ G+  
Sbjct: 435 EIHNRIIKSRMGLDSFVGI--ALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSL 492

Query: 393 HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEI 452
               +EA + F +M++ GV PD   +  +L  C++   V+ G +    +    +  +  I
Sbjct: 493 QKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYI 552

Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLD 510
              +VD+  + G +++ ++LI       D   W  ++    +H L    L     +++ +
Sbjct: 553 SSTLVDMYSKCGNMQD-FQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLEN 611

Query: 511 LKPN 514
           +KPN
Sbjct: 612 VKPN 615



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/429 (23%), Positives = 189/429 (44%), Gaps = 71/429 (16%)

Query: 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFND 173
           T S + + C   K+L      H   I    + +++V N L+ +Y  C   +  A  VF+ 
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCS-DLGFAFKVFDG 102

Query: 174 MKWKNDVSWTTLITGYAHSGN--------------GYGGLGVFK-EMLLEGVEMNPYSFS 218
           M  ++ VSW  ++ GYA  G+              G G + +F   M   G   +  +F+
Sbjct: 103 MPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRTTFA 162

Query: 219 IAVRACASTGWVSFGKLIHAAVIKHG---------------------------------- 244
           + +++C+S      G  IH   +K G                                  
Sbjct: 163 VVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLELFKE 222

Query: 245 -------------------FGSNLPVMNSILDMYCRFDCLSD-ANQYFDEMTEKDLITWN 284
                              FG+++ +  + LDMY + + LSD +NQ F+ +   +L ++N
Sbjct: 223 MQKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYN 282

Query: 285 TIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            II GY +S    E L MF  ++      +  + +    ACA +     G QVH   ++ 
Sbjct: 283 AIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSMKS 342

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
               N+ +ANA++DMY KCG + ++  +F EM  RD V+W +++  +  +G+ ++ + LF
Sbjct: 343 LCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLF 402

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
             M++SG+ PD   + +VL AC+    ++ G++    +    +  +  +   ++D+  + 
Sbjct: 403 VWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKC 462

Query: 464 GRVKEAYEL 472
           G +++A +L
Sbjct: 463 GMMEKAEKL 471



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 132/254 (51%), Gaps = 3/254 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S +   LI  Y   G++E+A  L D + E+ VVSW  +I+G++      +A   F +M+ 
Sbjct: 449 SFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLE 508

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             V+P+ FT +++L  C  + ++     +H   IK+ L+   Y+ ++L+D+Y+ C  +M 
Sbjct: 509 MGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCG-NMQ 567

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           + +L+F     ++ V+W  ++ GYA  G G   L +F+ M LE V+ N  +F   +RAC 
Sbjct: 568 DFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACG 627

Query: 226 STGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLITW 283
             G V  G    H+ +  +G    L   + ++D+  R   +S A +  + M  E D + W
Sbjct: 628 HMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIW 687

Query: 284 NTIIAGYEKSGSSE 297
            T+++  +  G+ E
Sbjct: 688 RTLLSXCKIHGNVE 701


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 216/598 (36%), Positives = 325/598 (54%), Gaps = 53/598 (8%)

Query: 62  IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV--NPNAFTLSSVL 119
           + +AR +FDEM   DVVSW  +I  Y        A  +F  M  NE    P+  TL +VL
Sbjct: 178 LSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMT-NEFGCRPDNITLVNVL 236

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179
             C  + + S    +H  A+   +  +++V N L+D+YA C + MD A  VF++M  K+ 
Sbjct: 237 PPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGM-MDEANTVFSNMSVKDV 295

Query: 180 VSWTTL-----------------------------------ITGYAHSGNGYGGLGVFKE 204
           VSW  +                                   I+GYA  G GY  LGV ++
Sbjct: 296 VSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQ 355

Query: 205 MLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH-------GFGSNLPVMNSILD 257
           ML  G++ N  +    +  CAS G +  GK IH   IK+       G G    V+N ++D
Sbjct: 356 MLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLID 415

Query: 258 MYCRFDCLSDANQYFDEMT--EKDLITWNTIIAGYEKSG-SSECLNMFSKMKSE--RFSP 312
           MY +   +  A   FD ++  E+D++TW  +I GY + G +++ L + S+M  E  +  P
Sbjct: 416 MYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRP 475

Query: 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG-NLALANALIDMYAKCGNISDSQKI 371
           N FT +  + ACA+LAAL  G+Q+HA  +R   +   L ++N LIDMYAKCG+ISD++ +
Sbjct: 476 NAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLV 535

Query: 372 FSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLV 431
           F  M  ++ VTWTS+M GYG HG+G+EA+ +FDEM + G + D +  + VL ACSH+G++
Sbjct: 536 FDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMI 595

Query: 432 DEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490
           D+G++YF  M   + V+P  E Y C+VDLLGRAGR+  A  LI+ MP +P   VW   L 
Sbjct: 596 DQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLS 655

Query: 491 ACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKE 550
            C+ H    LG+ AA ++ +L  N  G+Y +LSN+YA  G+W++  + R +MR  G KK 
Sbjct: 656 CCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKR 715

Query: 551 VGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
            G SW+E       F   DK   H + +Y VL   ++ + +  Y P+    +HD++ E
Sbjct: 716 PGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDE 773



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 153/558 (27%), Positives = 248/558 (44%), Gaps = 81/558 (14%)

Query: 4   KRLLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSI---------------- 47
           +RLL   A    H+    IK SL S     I   PP I K  +I                
Sbjct: 3   RRLLIPNAAAKSHQY---IKVSLFSTSAPEIT--PPFIHKCKTISQVKLIHQKLLSFGIL 57

Query: 48  ---LATNLIKSYFDEGLIEEARTLFDEMPERD--VVSWTVMIAGYTSFNCHNQAWTVFVE 102
              L ++LI +Y   G +  A +L    P  D  V  W  +I  Y    C N+   +F  
Sbjct: 58  TLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGL 117

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M      P+ +T   V KAC  + S+      H +++  G   +++V N+L+ +Y+  C 
Sbjct: 118 MHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSR-CR 176

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAV 221
           S+ +AR VF++M   + VSW ++I  YA  G     L +F  M  E G   +  +    +
Sbjct: 177 SLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVL 236

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
             CAS G  S GK +H   +      N+ V N ++DMY +   + +AN  F  M+ KD++
Sbjct: 237 PPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVV 296

Query: 282 TWNTIIAGYEKSGSSE-CLNMFSKMKSER------------------------------- 309
           +WN ++AGY + G  E  + +F KM+ E+                               
Sbjct: 297 SWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQM 356

Query: 310 ----FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL--------DGNLALANALID 357
                 PN  T  S+++ CA++ AL  G+++H   ++  +        D N+ + N LID
Sbjct: 357 LSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVI-NQLID 415

Query: 358 MYAKCGNISDSQKIFSEMS--DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG--VRP 413
           MYAKC  +  ++ +F  +S  +RD+VTWT M+ GY  HG   +A+EL  EM +     RP
Sbjct: 416 MYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRP 475

Query: 414 DRIVFMAVLTACSHAGLVDEG--LKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471
           +       L AC+    +  G  +  +   N  N  P   +  C++D+  + G + +A  
Sbjct: 476 NAFTISCALVACASLAALRIGKQIHAYALRNQQNAVP-LFVSNCLIDMYAKCGSISDARL 534

Query: 472 LIKSMPFKPDESVWGPLL 489
           +  +M  K +E  W  L+
Sbjct: 535 VFDNMMAK-NEVTWTSLM 551



 Score = 47.0 bits (110), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 7/101 (6%)

Query: 45  PSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
           P  ++  LI  Y   G I +AR +FD M  ++ V+WT ++ GY       +A  +F EM 
Sbjct: 512 PLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMR 571

Query: 105 RNEVNPNAFTLSSVLKAC-------KGMKSLSNAALVHGMA 138
           R     +  TL  VL AC       +GM+  +    V G++
Sbjct: 572 RIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVS 612


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/549 (36%), Positives = 309/549 (56%), Gaps = 3/549 (0%)

Query: 62  IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121
           IE A   F E    +VV W VM+  Y   +    ++ +F +M   E+ PN +T  S+LK 
Sbjct: 440 IETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKT 499

Query: 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS 181
           C  +  L     +H   IK   + + YV + L+D+YA     +D A  +      K+ VS
Sbjct: 500 CIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLG-KLDTAWDILIRFAGKDVVS 558

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           WTT+I GY         L  F++ML  G+  +    + AV ACA    +  G+ IHA   
Sbjct: 559 WTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQAC 618

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLN 300
             GF S+LP  N+++ +Y R   + ++   F++    D I WN +++G+++SG++E  L 
Sbjct: 619 VSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALR 678

Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360
           +F +M  E    N FTF S + A +  A +  G+QVHA I + G D    + NALI MYA
Sbjct: 679 VFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYA 738

Query: 361 KCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420
           KCG+ISD++K F E+S ++ V+W +++  Y  HG G EA++ FD+M+ S VRP+ +  + 
Sbjct: 739 KCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVG 798

Query: 421 VLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
           VL+ACSH GLVD+G+ YF+SMN +Y ++P  E Y CVVD+L RAG +  A E I+ MP K
Sbjct: 799 VLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIK 858

Query: 480 PDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFR 539
           PD  VW  LL AC  H+   +G+ AA  +L+L+P    TY++LSN+YA   KW+     R
Sbjct: 859 PDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTR 918

Query: 540 KIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDID 599
           + M+  G KKE G SWIEV++ +  F   D+       ++   + L +  +E  Y  D  
Sbjct: 919 QKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCF 978

Query: 600 CLIHDLEGE 608
            L+++L+ E
Sbjct: 979 SLLNELQHE 987



 Score =  225 bits (574), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 126/453 (27%), Positives = 229/453 (50%), Gaps = 3/453 (0%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           +  +++   LI  Y   G ++ AR +FD +  +D  SW  MI+G +   C  +A  +F +
Sbjct: 219 RDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCD 278

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M    + P  +  SSVL ACK ++SL     +HG+ +K G     YV N+L+ +Y     
Sbjct: 279 MYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLG- 337

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
           ++ +A  +F++M  ++ V++ TLI G +  G G   + +FK M L+G+E +  + +  V 
Sbjct: 338 NLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVV 397

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           AC++ G +  G+ +HA   K GF SN  +  ++L++Y +   +  A  YF E   ++++ 
Sbjct: 398 ACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVL 457

Query: 283 WNTIIAGYE-KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           WN ++  Y           +F +M+ E   PN +T+ SI+  C  L  L  G+Q+H+ I+
Sbjct: 458 WNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQII 517

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           +     N  + + LIDMYAK G +  +  I    + +D+V+WT+M+ GY  +    +A+ 
Sbjct: 518 KTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALT 577

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461
            F +M+  G+R D +     ++AC+    + EG +          + +      +V L  
Sbjct: 578 TFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYS 637

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKE 494
           R G+++E+Y L        D   W  L+   ++
Sbjct: 638 RCGKIEESY-LAFEQTEAGDNIAWNALVSGFQQ 669



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 127/465 (27%), Positives = 229/465 (49%), Gaps = 4/465 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L+  L   Y  +G +  A  +FDEMPER + +W  MI    S N   + + +FV MV   
Sbjct: 122 LSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSEN 181

Query: 108 VNPNAFTLSSVLKACKGMK-SLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           V PN  T S VL+AC+G   +      +H   + +GL  S  V N L+D+Y+     +D 
Sbjct: 182 VTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGF-VDL 240

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR VF+ ++ K+  SW  +I+G + +      + +F +M + G+   PY+FS  + AC  
Sbjct: 241 ARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKK 300

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  G+ +H  V+K GF S+  V N+++ +Y     L  A   F  M+++D +T+NT+
Sbjct: 301 IESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTL 360

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I G  + G  E  + +F +M  +   P+  T  S++ AC+    L  GQQ+HA   + G 
Sbjct: 361 INGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGF 420

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             N  +  AL+++YAKC +I  +   F E    ++V W  M++ YG     + +  +F +
Sbjct: 421 ASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQ 480

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M    + P++  + ++L  C   G ++ G +    +   N   N  +   ++D+  + G+
Sbjct: 481 MQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGK 540

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD 510
           +  A++++     K D   W  ++    ++   +       ++LD
Sbjct: 541 LDTAWDILIRFAGK-DVVSWTTMIAGYTQYNFDDKALTTFRQMLD 584



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 108/377 (28%), Positives = 188/377 (49%), Gaps = 9/377 (2%)

Query: 101 VEMVRNE-VNPNAFTLSSVLKAC-KGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA 158
           ++ V N  + PN  TL  +L+ C K   SL     +H   +K GL+ +  +   L D Y 
Sbjct: 72  IDSVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYL 131

Query: 159 TCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGL-GVFKEMLLEGVEMNPYSF 217
                +  A  VF++M  +   +W  +I   A S N  G + G+F  M+ E V  N  +F
Sbjct: 132 FKG-DLYGAFKVFDEMPERTIFTWNKMIKELA-SRNLIGEVFGLFVRMVSENVTPNEGTF 189

Query: 218 SIAVRACASTGWVSFG--KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM 275
           S  + AC   G V+F   + IHA ++  G   +  V N ++D+Y R   +  A + FD +
Sbjct: 190 SGVLEACRG-GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGL 248

Query: 276 TEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334
             KD  +W  +I+G  K+   +E + +F  M      P  + F+S+++AC  + +L  G+
Sbjct: 249 RLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGE 308

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
           Q+H  +++ G   +  + NAL+ +Y   GN+  ++ IFS MS RD VT+ +++ G    G
Sbjct: 309 QLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCG 368

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG 454
           +G++A+ELF  M   G+ PD     +++ ACS  G +  G +            N +I G
Sbjct: 369 YGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEG 428

Query: 455 CVVDLLGRAGRVKEAYE 471
            +++L  +   ++ A +
Sbjct: 429 ALLNLYAKCADIETALD 445



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 112/240 (46%), Gaps = 3/240 (1%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+  Y   G IEE+   F++    D ++W  +++G+     + +A  VFV M R  ++ N
Sbjct: 632 LVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNN 691

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
            FT  S +KA     ++     VH +  K G +    V N+L+ +YA C  S+ +A   F
Sbjct: 692 NFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCG-SISDAEKQF 750

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
            ++  KN+VSW  +I  Y+  G G   L  F +M+   V  N  +    + AC+  G V 
Sbjct: 751 LEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVD 810

Query: 232 FG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLITWNTIIAG 289
            G     +   ++G          ++DM  R   LS A ++  EM  K D + W T+++ 
Sbjct: 811 KGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSA 870


>gi|356546093|ref|XP_003541466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Glycine max]
          Length = 775

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/557 (36%), Positives = 319/557 (57%), Gaps = 5/557 (0%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108
           A++L+  Y   GL+ EAR LFDEMPER+ VSW  MI+GY S    ++A+ +F  M   E 
Sbjct: 154 ASSLLNMYCKTGLVFEARDLFDEMPERNAVSWATMISGYASQELADEAFELFKLMRHEEK 213

Query: 109 --NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
             N N F  +SVL A      ++    VH +A+K GL   + V N+L+ +Y  C  S+++
Sbjct: 214 GKNENEFVFTSVLSALTCYMLVNTGRQVHSLAMKNGLVCIVSVANALVTMYVKCG-SLED 272

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A   F     KN ++W+ ++TG+A  G+    L +F +M   G   + ++    + AC+ 
Sbjct: 273 ALKTFELSGNKNSITWSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTLVGVINACSD 332

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  G+ +H   +K G+   L V+++++DMY +   + DA + F+ + + D++ W +I
Sbjct: 333 ACAIVEGRQMHGYSLKLGYELQLYVLSALVDMYAKCGSIVDARKGFECIQQPDVVLWTSI 392

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I GY ++G  E  LN++ KM+     PN  T  S++ AC+ LAAL  G+Q+HAGI++   
Sbjct: 393 ITGYVQNGDYEGALNLYGKMQLGGVIPNDLTMASVLKACSNLAALDQGKQMHAGIIKYNF 452

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
              + + +AL  MYAKCG++ D  +IF  M  RD+++W +M+ G   +G G E +ELF++
Sbjct: 453 SLEIPIGSALSAMYAKCGSLDDGYRIFWRMPARDVISWNAMISGLSQNGRGNEGLELFEK 512

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAG 464
           M   G +PD + F+ +L+ACSH GLVD G  YFK M D +N+ P  E Y C+VD+L RAG
Sbjct: 513 MCLEGTKPDNVTFVNLLSACSHMGLVDRGWVYFKMMFDEFNIAPTVEHYACMVDILSRAG 572

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           ++ EA E I+S        +W  LL A K HR  +LG  A  ++++L       Y++LS+
Sbjct: 573 KLHEAKEFIESATVDHGLCLWRILLAASKNHRDYDLGAYAGEKLMELGSLESSAYVLLSS 632

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           IY A GKWE+  + R +M+  G  KE G SWIE++     F+  D M      +   L++
Sbjct: 633 IYTALGKWEDVERVRGMMKARGVTKEPGCSWIELKSLTHVFVVGDNMHPQIDEIRLGLKL 692

Query: 585 LIRHMNETAYEPDIDCL 601
           L + M +  Y+P +D L
Sbjct: 693 LTKLMKDEGYQPLLDSL 709



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 130/462 (28%), Positives = 229/462 (49%), Gaps = 10/462 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF-----VE 102
           +A +LI  Y       +A  +FD +  +DVVSW  +I  ++    H  +  V      + 
Sbjct: 47  IANSLINLYAKCSHFSKANLVFDSINNKDVVSWNCLINAFSQQQAHAPSLHVMHLFRQLV 106

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M    + PNA TL+ V  A   +         H +A+K      ++  +SL+++Y    +
Sbjct: 107 MAHKTIVPNAHTLTGVFTAASTLSDSRAGRQAHALAVKTACSHDVFAASSLLNMYCKTGL 166

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE--GVEMNPYSFSIA 220
             + AR +F++M  +N VSW T+I+GYA          +FK M  E  G   N + F+  
Sbjct: 167 VFE-ARDLFDEMPERNAVSWATMISGYASQELADEAFELFKLMRHEEKGKNENEFVFTSV 225

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           + A      V+ G+ +H+  +K+G    + V N+++ MY +   L DA + F+    K+ 
Sbjct: 226 LSALTCYMLVNTGRQVHSLAMKNGLVCIVSVANALVTMYVKCGSLEDALKTFELSGNKNS 285

Query: 281 ITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           ITW+ ++ G+ + G S+  L +F  M      P+ FT   +I AC+   A+  G+Q+H  
Sbjct: 286 ITWSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTLVGVINACSDACAIVEGRQMHGY 345

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
            ++ G +  L + +AL+DMYAKCG+I D++K F  +   D+V WTS++ GY  +G  + A
Sbjct: 346 SLKLGYELQLYVLSALVDMYAKCGSIVDARKGFECIQQPDVVLWTSIITGYVQNGDYEGA 405

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL 459
           + L+ +M   GV P+ +   +VL ACS+   +D+G +    +  YN +    I   +  +
Sbjct: 406 LNLYGKMQLGGVIPNDLTMASVLKACSNLAALDQGKQMHAGIIKYNFSLEIPIGSALSAM 465

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLG 501
             + G + + Y +   MP + D   W  ++    ++   N G
Sbjct: 466 YAKCGSLDDGYRIFWRMPAR-DVISWNAMISGLSQNGRGNEG 506



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/391 (27%), Positives = 202/391 (51%), Gaps = 27/391 (6%)

Query: 117 SVLKA---CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFND 173
            VL+A   C   K L     +H   +  G   S  + NSL+++YA C      A LVF+ 
Sbjct: 12  QVLRALVHCTRHKQLRKGRALHARILVTGSFSSTQIANSLINLYAKCS-HFSKANLVFDS 70

Query: 174 MKWKNDVSWTTLITGYAHSGNGYGGLGV---FKEMLL--EGVEMNPYSFSIAVRACASTG 228
           +  K+ VSW  LI  ++        L V   F+++++  + +  N ++ +    A ++  
Sbjct: 71  INNKDVVSWNCLINAFSQQQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLTGVFTAASTLS 130

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
               G+  HA  +K     ++   +S+L+MYC+   + +A   FDEM E++ ++W T+I+
Sbjct: 131 DSRAGRQAHALAVKTACSHDVFAASSLLNMYCKTGLVFEARDLFDEMPERNAVSWATMIS 190

Query: 289 GY-EKSGSSECLNMFSKMKSER--FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           GY  +  + E   +F  M+ E    + N F FTS+++A      ++ G+QVH+  ++ GL
Sbjct: 191 GYASQELADEAFELFKLMRHEEKGKNENEFVFTSVLSALTCYMLVNTGRQVHSLAMKNGL 250

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
              +++ANAL+ MY KCG++ D+ K F    +++ +TW++M+ G+   G   +A++LF +
Sbjct: 251 VCIVSVANALVTMYVKCGSLEDALKTFELSGNKNSITWSAMVTGFAQFGDSDKALKLFYD 310

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE----IYGCVVDLLG 461
           M +SG  P     + V+ ACS A  + EG    + M+ Y++    E    +   +VD+  
Sbjct: 311 MHQSGELPSEFTLVGVINACSDACAIVEG----RQMHGYSLKLGYELQLYVLSALVDMYA 366

Query: 462 RAGRVKEA---YELIKSMPFKPDESVWGPLL 489
           + G + +A   +E I+    +PD  +W  ++
Sbjct: 367 KCGSIVDARKGFECIQ----QPDVVLWTSII 393



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 190/360 (52%), Gaps = 26/360 (7%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A  L+  Y   G +E+A   F+    ++ ++W+ M+ G+  F   ++A  +F +M ++ 
Sbjct: 256 VANALVTMYVKCGSLEDALKTFELSGNKNSITWSAMVTGFAQFGDSDKALKLFYDMHQSG 315

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
             P+ FTL  V+ AC    ++     +HG ++K G E  +YV ++L+D+YA C  S+ +A
Sbjct: 316 ELPSEFTLVGVINACSDACAIVEGRQMHGYSLKLGYELQLYVLSALVDMYAKCG-SIVDA 374

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R  F  ++  + V WT++ITGY  +G+  G L ++ +M L GV  N  + +  ++AC++ 
Sbjct: 375 RKGFECIQQPDVVLWTSIITGYVQNGDYEGALNLYGKMQLGGVIPNDLTMASVLKACSNL 434

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  GK +HA +IK+ F   +P+ +++  MY +   L D  + F  M  +D+I+WN +I
Sbjct: 435 AALDQGKQMHAGIIKYNFSLEIPIGSALSAMYAKCGSLDDGYRIFWRMPARDVISWNAMI 494

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL- 345
           +G  ++G  +E L +F KM  E   P+  TF ++++AC+           H G+V RG  
Sbjct: 495 SGLSQNGRGNEGLELFEKMCLEGTKPDNVTFVNLLSACS-----------HMGLVDRGWV 543

Query: 346 -------DGNLALA----NALIDMYAKCGNISDSQK-IFSEMSDRDLVTWTSMMIGYGAH 393
                  + N+A        ++D+ ++ G + ++++ I S   D  L  W  ++     H
Sbjct: 544 YFKMMFDEFNIAPTVEHYACMVDILSRAGKLHEAKEFIESATVDHGLCLWRILLAASKNH 603


>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/562 (35%), Positives = 318/562 (56%), Gaps = 8/562 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++ ++L+  Y      E+A  LF+EMPE+DV  W  +I+ Y       +A   F  M R 
Sbjct: 142 VVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKEALEYFGLMRRF 201

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
              PN+ T+++ + +C  +  L+    +H   I  G     ++ ++L+D+Y  C   ++ 
Sbjct: 202 GFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCG-HLEM 260

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  VF  M  K  V+W ++I+GY   G+    + +FK M  EGV+    + S  +  C+ 
Sbjct: 261 AIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSR 320

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
           +  +  GK +H   I++   S++ + +S++D+Y +   +  A   F  + +  +++WN +
Sbjct: 321 SARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSWNVM 380

Query: 287 IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+GY   G   E L +FS+M+     P+  TFTS++ AC+ LAAL  G+++H  I+ + L
Sbjct: 381 ISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHNLIIEKKL 440

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           D N  +  AL+DMYAKCG + ++  +F  +  RDLV+WTSM+  YG+HG    A+ELF E
Sbjct: 441 DNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGQAYVALELFAE 500

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAG 464
           M++S ++PDR+ F+A+L+AC HAGLVDEG  YF  M N Y + P  E Y C++DLLGRAG
Sbjct: 501 MLQSNMKPDRVTFLAILSACGHAGLVDEGCYYFNQMVNVYGIIPRVEHYSCLIDLLGRAG 560

Query: 465 RVKEAYELIKSMP-FKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           R+ EAYE+++  P  + D  +   L  AC+ HR  +LG   A  ++D  P+   TYI+LS
Sbjct: 561 RLHEAYEILQQNPEIRDDVELLSTLFSACRLHRNIDLGAEIARTLIDKDPDDSSTYILLS 620

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           N+YA+  KW+E    R  M+ +G KK  G SWIE+  K+  F   D    H + V+  L 
Sbjct: 621 NMYASAHKWDEVRVVRSKMKELGLKKNPGCSWIEINQKILPFFVEDNSHLHLELVFKCLS 680

Query: 584 MLIRHMNETA----YEPDIDCL 601
            L  HM + +    Y  D++ L
Sbjct: 681 YLSDHMEDESKPFTYHFDVETL 702



 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 157/516 (30%), Positives = 270/516 (52%), Gaps = 11/516 (2%)

Query: 17  KIPPIIKQSL--QSVKKSSI--QSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEM 72
           K+ P+++  +  +S+K+  +  Q    L  +    L  NLI  Y    L + A+ +FD M
Sbjct: 5   KLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVFDNM 64

Query: 73  PERDVVS-WTVMIAGYTSFNCHNQAWTVFVEMVRNE-VNPNAFTLSSVLKACKGMKSLSN 130
                +S W  ++AGYT    + +A  +F +++    + P+++T  SVLKAC G+     
Sbjct: 65  ENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVL 124

Query: 131 AALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYA 190
             ++H   +K GL   I V +SL+ +YA C  + + A  +FN+M  K+   W T+I+ Y 
Sbjct: 125 GKMIHTCLVKTGLMMDIVVGSSLVGMYAKCN-AFEKAIWLFNEMPEKDVACWNTVISCYY 183

Query: 191 HSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLP 250
            SGN    L  F  M   G E N  + + A+ +CA    ++ G  IH  +I  GF  +  
Sbjct: 184 QSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSF 243

Query: 251 VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSER 309
           + ++++DMY +   L  A + F++M +K ++ WN++I+GY   G S  C+ +F +M +E 
Sbjct: 244 ISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEG 303

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
             P   T +S+I  C+  A L  G+ VH   +R  +  ++ + ++L+D+Y KCG +  ++
Sbjct: 304 VKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAE 363

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
            IF  +    +V+W  M+ GY A G   EA+ LF EM KS V PD I F +VLTACS   
Sbjct: 364 NIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLA 423

Query: 430 LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
            +++G +    + +  ++ N+ + G ++D+  + G V EA+ + K +P K D   W  ++
Sbjct: 424 ALEKGEEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLP-KRDLVSWTSMI 482

Query: 490 GACKEH--RLPNLGKLAALRVLDLKPNMMGTYIILS 523
            A   H      L   A +   ++KP+ +    ILS
Sbjct: 483 TAYGSHGQAYVALELFAEMLQSNMKPDRVTFLAILS 518



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 170/347 (48%), Gaps = 4/347 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S +++ L+  Y   G +E A  +F++MP++ VV+W  MI+GY           +F  M  
Sbjct: 242 SFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYN 301

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             V P   TLSS++  C     L     VHG  I+  ++  +++ +SLMD+Y  C   ++
Sbjct: 302 EGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCG-KVE 360

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A  +F  +     VSW  +I+GY   G  +  LG+F EM    VE +  +F+  + AC+
Sbjct: 361 LAENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACS 420

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               +  G+ IH  +I+    +N  VM ++LDMY +   + +A   F  + ++DL++W +
Sbjct: 421 QLAALEKGEEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTS 480

Query: 286 IIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR-R 343
           +I  Y   G +   L +F++M      P+  TF +I++AC     +  G      +V   
Sbjct: 481 MITAYGSHGQAYVALELFAEMLQSNMKPDRVTFLAILSACGHAGLVDEGCYYFNQMVNVY 540

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSD-RDLVTWTSMMIG 389
           G+   +   + LID+  + G + ++ +I  +  + RD V   S +  
Sbjct: 541 GIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLSTLFS 587


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/565 (37%), Positives = 316/565 (55%), Gaps = 36/565 (6%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S L   L+++Y     +  AR +FDE+PER+V+   VMI  Y +   + +   VF  M  
Sbjct: 74  SSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCG 133

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             V P+ +T   VLKAC    ++     +HG A K GL  +++V N L+ +Y  C   + 
Sbjct: 134 CNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGF-LS 192

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            ARLV ++M  ++ VSW +L+ GYA +      L V +EM  E V+++  + ++A     
Sbjct: 193 EARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREM--ESVKISHDAGTMA----- 245

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
                    L+ A        SN    N    MY +          F +M +K L++WN 
Sbjct: 246 --------SLLPAV-------SNTTTENV---MYVK--------DMFFKMGKKSLVSWNV 279

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I  Y K+    E + ++S+M+++ F P+  + TS++ AC   +ALS G+++H  I R+ 
Sbjct: 280 MIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKK 339

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           L  NL L NALIDMYAKCG +  ++ +F  M  RD+V+WT+M+  YG  G G +A+ LF 
Sbjct: 340 LIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFS 399

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRA 463
           ++  SG+ PD I F+  L ACSHAGL++EG   FK M D Y + P  E   C+VDLLGRA
Sbjct: 400 KLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRA 459

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G+VKEAY  I+ M  +P+E VWG LLGAC+ H   ++G LAA ++  L P   G Y++LS
Sbjct: 460 GKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLS 519

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           NIYA  G+WEE    R IM+  G KK  G S +EV   +  F+  D+    +  +Y  L+
Sbjct: 520 NIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELD 579

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGE 608
           +L++ M E  Y PD +  +HD+E E
Sbjct: 580 VLVKKMKELGYVPDSESALHDVEEE 604


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 228/647 (35%), Positives = 336/647 (51%), Gaps = 79/647 (12%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMP--ERDVVSWTVMIAGYTSFNCHNQAWT 98
           IP   +I  T LI +Y   G +E  R +F+  P   RD V +  MI GY      + A  
Sbjct: 74  IPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALE 133

Query: 99  VFVEMVRNEVNPNAFTLSSVLKA-CKGMKSLSNAALVHGMAIKEGLEG-SIYVENSLMDV 156
           +F  M R++  P+ FT +SVL A    + +      +H   +K G+   S  V N+L+ V
Sbjct: 134 LFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSV 193

Query: 157 Y-------ATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGN--------------- 194
           Y          C +M +AR +F++M  +++++WTT+ITGY  + +               
Sbjct: 194 YVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENL 253

Query: 195 ---------GYGGLGVFKE-------MLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHA 238
                    GY   G F+E       M   G++ +  +++  + ACA+ G    GK +HA
Sbjct: 254 GAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHA 313

Query: 239 AVIKHGFGSN----LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG 294
            ++K+    N    L V N+++ +YC+ + + +A + F  M  +++ITWN I++GY  +G
Sbjct: 314 YILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAG 373

Query: 295 --------------------------------SSECLNMFSKMKSERFSPNCFTFTSIIA 322
                                             E L +F +M+ + F P  F F   + 
Sbjct: 374 RMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALT 433

Query: 323 ACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVT 382
           AC+ L AL  G+Q+HA +V  G + +L++ NA+I MYAKCG +  ++ +F  M   DLV+
Sbjct: 434 ACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVS 493

Query: 383 WTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM- 441
           W SM+   G HGHG +AIELFD+M+K GV PDRI F+ VLTACSHAGLV++G  YF SM 
Sbjct: 494 WNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSML 553

Query: 442 NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLG 501
             Y + P ++ Y  +VDL  RAG    A  +I SMP KP   VW  LL  C+ H   +LG
Sbjct: 554 ESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLG 613

Query: 502 KLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDK 561
             AA ++  L P   GTY++LSNIYA  G+W E AK RK+MR    +KE   SWIEV +K
Sbjct: 614 IEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVENK 673

Query: 562 VCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           V  F+ +D +      VY  LE L   M +  Y PD   ++HD+E E
Sbjct: 674 VHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYE 720



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 116/481 (24%), Positives = 212/481 (44%), Gaps = 89/481 (18%)

Query: 96  AWTVFVEMVRNEVNPNAFTLSSVLKA-CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLM 154
           A  V   M+ +   P    L+ +L+  CK      ++ LV+   + E +     +  + +
Sbjct: 32  ARAVHAHMIASGFKPRGHFLNRLLEMYCK------SSNLVYARQLFEEIPNPDAIARTTL 85

Query: 155 DVYATCCI-SMDNARLVFN--DMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVE 211
            + A C + +++  R +FN   +  ++ V +  +ITGYAH+G+G+  L +F+ M  +   
Sbjct: 86  -ITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFR 144

Query: 212 MNPYSFSIAVRACA-STGWVSFGKLIHAAVIKHGFGS-NLPVMNSILDMYCR------FD 263
            + ++F+  + A     G       +H AV+K G G  +  V+N++L +Y +        
Sbjct: 145 PDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIS 204

Query: 264 C--LSDANQYFDEMTEKDLITWNTIIAGYEK--------------------------SGS 295
           C  +  A + FDEM ++D +TW T+I GY +                          SG 
Sbjct: 205 CSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGY 264

Query: 296 SEC------LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN- 348
             C      L +  KM+      +  T+T+II+ACA + +   G+QVHA I++  L+ N 
Sbjct: 265 VHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNH 324

Query: 349 ---LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY--------------- 390
              L+++NALI +Y K   + +++KIF  M  R+++TW +++ GY               
Sbjct: 325 SFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEE 384

Query: 391 ----------------GAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434
                             +G G E ++LF +M   G  P    F   LTACS  G ++ G
Sbjct: 385 MPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENG 444

Query: 435 LKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKE 494
            +    +       +  +   ++ +  + G V+ A  +  +MP   D   W  ++ A  +
Sbjct: 445 RQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMP-SVDLVSWNSMIAALGQ 503

Query: 495 H 495
           H
Sbjct: 504 H 504



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 145/347 (41%), Gaps = 81/347 (23%)

Query: 213 NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYF 272
           N Y+  + + +       S  + +HA +I  GF      +N +L+MYC+   L  A Q F
Sbjct: 12  NRYAEKLQLCSPQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLF 71

Query: 273 DEMTEKDLIT---------------------------------WNTIIAGYEKSGSSE-C 298
           +E+   D I                                  +N +I GY  +G     
Sbjct: 72  EEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSA 131

Query: 299 LNMFSKMKSERFSPNCFTFTSIIAACATLAA--LSCGQQVHAGIVRRGLDG-NLALANAL 355
           L +F  M+ + F P+ FTFTS+++A          CG Q+H  +V+ G+   + ++ NAL
Sbjct: 132 LELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCG-QMHCAVVKTGMGCVSSSVLNAL 190

Query: 356 IDMYAK--------CGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           + +Y K        C  +  ++K+F EM  RD +TWT+M+ GY  +     A E+F+ MV
Sbjct: 191 LSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMV 250

Query: 408 KS-------------------------------GVRPDRIVFMAVLTACSHAGLVDEGLK 436
           ++                               G++ D I +  +++AC++ G    G +
Sbjct: 251 ENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQ 310

Query: 437 YFKSMNDYNVNPNK----EIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
               +    +NPN      +   ++ L  +  +V EA ++  +MP +
Sbjct: 311 VHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVR 357


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/580 (35%), Positives = 327/580 (56%), Gaps = 41/580 (7%)

Query: 60  GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119
           G ++EA  +F  MPE D  SW  M++G+   +   +A   FV+M   +   N ++  S L
Sbjct: 99  GKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSAL 158

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179
            AC G+  L+    +H +  K      +Y+ ++L+D+Y+ C + +  A+  F+ M  +N 
Sbjct: 159 SACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGV-VACAQRAFDGMAVRNI 217

Query: 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAA 239
           VSW +LIT Y  +G     L VF  M+  GVE +  + +  V ACAS   +  G  IHA 
Sbjct: 218 VSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHAR 277

Query: 240 VIKHG-FGSNLPVMNSILDMYCRFDCLSDANQYFDEM----------------------- 275
           V+K   + ++L + N+++DMY +   +++A   FD M                       
Sbjct: 278 VVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKA 337

Query: 276 --------TEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACAT 326
                    EK++++WN +IAGY ++G +E  + +F  +K E   P  +TF +++ ACA 
Sbjct: 338 ARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACAN 397

Query: 327 LAALSCGQQVHAGIVRRGL------DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDL 380
           LA L  G+Q H  I++ G       + ++ + N+LIDMY KCG + D   +F  M +RD+
Sbjct: 398 LADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDV 457

Query: 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS 440
           V+W +M++GY  +G+G  A+E+F +M+ SG +PD +  + VL+ACSHAGLV+EG +YF S
Sbjct: 458 VSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHS 517

Query: 441 M-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN 499
           M  +  + P K+ + C+VDLLGRAG + EA +LI++MP +PD  VWG LL ACK H    
Sbjct: 518 MRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAACKVHGNIE 577

Query: 500 LGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVR 559
           LGK  A +++++ P   G Y++LSN+YA  G+W++  + RK MR  G  K+ G SWIE++
Sbjct: 578 LGKYVAEKLMEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQRGVIKQPGCSWIEIQ 637

Query: 560 DKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDID 599
            +V  F+  DK     + ++ VL+ L   M    Y P+ D
Sbjct: 638 SRVHVFMVKDKRHPLKKDIHLVLKFLTEQMKWAGYVPEAD 677



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 188/377 (49%), Gaps = 38/377 (10%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM 174
            + +L +C   KS  +A  +H   IK      I+++N L+D Y  C    ++AR VF+ M
Sbjct: 22  FAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGY-FEDARKVFDRM 80

Query: 175 KWKN-------------------------------DVSWTTLITGYAHSGNGYGGLGVFK 203
             +N                                 SW  +++G+A        L  F 
Sbjct: 81  PQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFV 140

Query: 204 EMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFD 263
           +M  E   +N YSF  A+ ACA    ++ G  IHA + K  +  ++ + ++++DMY +  
Sbjct: 141 DMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCG 200

Query: 264 CLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIA 322
            ++ A + FD M  +++++WN++I  YE++G + + L +F  M      P+  T  S+++
Sbjct: 201 VVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVS 260

Query: 323 ACATLAALSCGQQVHAGIVRRG-LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLV 381
           ACA+ +A+  G Q+HA +V+R     +L L NAL+DMYAKC  +++++ +F  M  R++V
Sbjct: 261 ACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVV 320

Query: 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441
           + TSM+ GY      K A  +F  M++  V    + + A++   +  G  +E ++ F  +
Sbjct: 321 SETSMVCGYARAASVKAARLMFSNMMEKNV----VSWNALIAGYTQNGENEEAVRLFLLL 376

Query: 442 NDYNVNPNKEIYGCVVD 458
              ++ P    +G +++
Sbjct: 377 KRESIWPTHYTFGNLLN 393



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 182/399 (45%), Gaps = 62/399 (15%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + + L+  Y   G++  A+  FD M  R++VSW  +I  Y       +A  VFV M+ N 
Sbjct: 188 MGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNG 247

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIK-EGLEGSIYVENSLMDVYATC------ 160
           V P+  TL+SV+ AC    ++     +H   +K +     + + N+L+D+YA C      
Sbjct: 248 VEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEA 307

Query: 161 ------------------------CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGY 196
                                     S+  ARL+F++M  KN VSW  LI GY  +G   
Sbjct: 308 RLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENE 367

Query: 197 GGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGF------GSNLP 250
             + +F  +  E +    Y+F   + ACA+   +  G+  H  ++KHGF       S++ 
Sbjct: 368 EAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIF 427

Query: 251 VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSER 309
           V NS++DMY +   + D    F+ M E+D+++WN +I GY ++G  +  L +F KM    
Sbjct: 428 VGNSLIDMYMKCGMVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSG 487

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG------LDGNLALA------NALID 357
             P+  T   +++AC+           HAG+V  G      +   L LA        ++D
Sbjct: 488 QKPDHVTMIGVLSACS-----------HAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVD 536

Query: 358 MYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHGH 395
           +  + G + ++  +   M  + D V W S++     HG+
Sbjct: 537 LLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAACKVHGN 575



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 155/316 (49%), Gaps = 33/316 (10%)

Query: 197 GGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSIL 256
           G  G  ++++ E   ++   F+  + +C  +      + IHA +IK  F S + + N ++
Sbjct: 2   GRHGFVQKLVGELCFLDSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLV 61

Query: 257 DMYCRFDCLSDANQYFDEMTEK-------------------------------DLITWNT 285
           D Y +     DA + FD M ++                               D  +WN 
Sbjct: 62  DAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNA 121

Query: 286 IIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +++G+ +     E L  F  M SE F  N ++F S ++ACA L  L+ G Q+HA I +  
Sbjct: 122 MVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSR 181

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
              ++ + +AL+DMY+KCG ++ +Q+ F  M+ R++V+W S++  Y  +G   +A+E+F 
Sbjct: 182 YLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFV 241

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG-CVVDLLGRA 463
            M+ +GV PD I   +V++AC+    + EGL+    +   +   N  + G  +VD+  + 
Sbjct: 242 MMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKC 301

Query: 464 GRVKEAYELIKSMPFK 479
            RV EA  +   MP +
Sbjct: 302 RRVNEARLVFDRMPLR 317



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 130/265 (49%), Gaps = 9/265 (3%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P    +  T+++  Y     ++ AR +F  M E++VVSW  +IAGYT    + +A  +F
Sbjct: 314 MPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLF 373

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLS------NAALVHGMAIKEGLEGSIYVENSLM 154
           + + R  + P  +T  ++L AC  +  L          L HG   + G E  I+V NSL+
Sbjct: 374 LLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLI 433

Query: 155 DVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP 214
           D+Y  C +  D   LVF  M  ++ VSW  +I GYA +G G   L +F++ML+ G + + 
Sbjct: 434 DMYMKCGMVEDGC-LVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDH 492

Query: 215 YSFSIAVRACASTGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFD 273
            +    + AC+  G V  G +  H+   + G          ++D+  R  CL +AN    
Sbjct: 493 VTMIGVLSACSHAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQ 552

Query: 274 EM-TEKDLITWNTIIAGYEKSGSSE 297
            M  + D + W +++A  +  G+ E
Sbjct: 553 TMPMQPDNVVWGSLLAACKVHGNIE 577


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/549 (36%), Positives = 309/549 (56%), Gaps = 3/549 (0%)

Query: 62  IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121
           IE A   F E    +VV W VM+  Y   +    ++ +F +M   E+ PN +T  S+LK 
Sbjct: 400 IETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKT 459

Query: 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS 181
           C  +  L     +H   IK   + + YV + L+D+YA     +D A  +      K+ VS
Sbjct: 460 CIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLG-KLDTAWDILIRFAGKDVVS 518

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           WTT+I GY         L  F++ML  G+  +    + AV ACA    +  G+ IHA   
Sbjct: 519 WTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQAC 578

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLN 300
             GF S+LP  N+++ +Y R   + ++   F++    D I WN +++G+++SG++E  L 
Sbjct: 579 VSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALR 638

Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360
           +F +M  E    N FTF S + A +  A +  G+QVHA I + G D    + NALI MYA
Sbjct: 639 VFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYA 698

Query: 361 KCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420
           KCG+ISD++K F E+S ++ V+W +++  Y  HG G EA++ FD+M+ S VRP+ +  + 
Sbjct: 699 KCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVG 758

Query: 421 VLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
           VL+ACSH GLVD+G+ YF+SMN +Y ++P  E Y CVVD+L RAG +  A E I+ MP K
Sbjct: 759 VLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIK 818

Query: 480 PDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFR 539
           PD  VW  LL AC  H+   +G+ AA  +L+L+P    TY++LSN+YA   KW+     R
Sbjct: 819 PDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTR 878

Query: 540 KIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDID 599
           + M+  G KKE G SWIEV++ +  F   D+       ++   + L +  +E  Y  D  
Sbjct: 879 QKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCF 938

Query: 600 CLIHDLEGE 608
            L+++L+ E
Sbjct: 939 SLLNELQHE 947



 Score =  225 bits (573), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 126/453 (27%), Positives = 229/453 (50%), Gaps = 3/453 (0%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           +  +++   LI  Y   G ++ AR +FD +  +D  SW  MI+G +   C  +A  +F +
Sbjct: 179 RDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCD 238

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M    + P  +  SSVL ACK ++SL     +HG+ +K G     YV N+L+ +Y     
Sbjct: 239 MYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLG- 297

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
           ++ +A  +F++M  ++ V++ TLI G +  G G   + +FK M L+G+E +  + +  V 
Sbjct: 298 NLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVV 357

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           AC++ G +  G+ +HA   K GF SN  +  ++L++Y +   +  A  YF E   ++++ 
Sbjct: 358 ACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVL 417

Query: 283 WNTIIAGYE-KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           WN ++  Y           +F +M+ E   PN +T+ SI+  C  L  L  G+Q+H+ I+
Sbjct: 418 WNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQII 477

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           +     N  + + LIDMYAK G +  +  I    + +D+V+WT+M+ GY  +    +A+ 
Sbjct: 478 KTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALT 537

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461
            F +M+  G+R D +     ++AC+    + EG +          + +      +V L  
Sbjct: 538 TFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYS 597

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKE 494
           R G+++E+Y L        D   W  L+   ++
Sbjct: 598 RCGKIEESY-LAFEQTEAGDNIAWNALVSGFQQ 629



 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 127/465 (27%), Positives = 229/465 (49%), Gaps = 4/465 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L+  L   Y  +G +  A  +FDEMPER + +W  MI    S N   + + +FV MV   
Sbjct: 82  LSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSEN 141

Query: 108 VNPNAFTLSSVLKACKGMK-SLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           V PN  T S VL+AC+G   +      +H   + +GL  S  V N L+D+Y+     +D 
Sbjct: 142 VTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGF-VDL 200

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR VF+ ++ K+  SW  +I+G + +      + +F +M + G+   PY+FS  + AC  
Sbjct: 201 ARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKK 260

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  G+ +H  V+K GF S+  V N+++ +Y     L  A   F  M+++D +T+NT+
Sbjct: 261 IESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTL 320

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I G  + G  E  + +F +M  +   P+  T  S++ AC+    L  GQQ+HA   + G 
Sbjct: 321 INGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGF 380

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             N  +  AL+++YAKC +I  +   F E    ++V W  M++ YG     + +  +F +
Sbjct: 381 ASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQ 440

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M    + P++  + ++L  C   G ++ G +    +   N   N  +   ++D+  + G+
Sbjct: 441 MQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGK 500

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD 510
           +  A++++     K D   W  ++    ++   +       ++LD
Sbjct: 501 LDTAWDILIRFAGK-DVVSWTTMIAGYTQYNFDDKALTTFRQMLD 544



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 108/377 (28%), Positives = 188/377 (49%), Gaps = 9/377 (2%)

Query: 101 VEMVRNE-VNPNAFTLSSVLKAC-KGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA 158
           ++ V N  + PN  TL  +L+ C K   SL     +H   +K GL+ +  +   L D Y 
Sbjct: 32  IDSVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYL 91

Query: 159 TCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGL-GVFKEMLLEGVEMNPYSF 217
                +  A  VF++M  +   +W  +I   A S N  G + G+F  M+ E V  N  +F
Sbjct: 92  FKG-DLYGAFKVFDEMPERTIFTWNKMIKELA-SRNLIGEVFGLFVRMVSENVTPNEGTF 149

Query: 218 SIAVRACASTGWVSFG--KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM 275
           S  + AC   G V+F   + IHA ++  G   +  V N ++D+Y R   +  A + FD +
Sbjct: 150 SGVLEACRG-GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGL 208

Query: 276 TEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334
             KD  +W  +I+G  K+   +E + +F  M      P  + F+S+++AC  + +L  G+
Sbjct: 209 RLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGE 268

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
           Q+H  +++ G   +  + NAL+ +Y   GN+  ++ IFS MS RD VT+ +++ G    G
Sbjct: 269 QLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCG 328

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG 454
           +G++A+ELF  M   G+ PD     +++ ACS  G +  G +            N +I G
Sbjct: 329 YGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEG 388

Query: 455 CVVDLLGRAGRVKEAYE 471
            +++L  +   ++ A +
Sbjct: 389 ALLNLYAKCADIETALD 405



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 112/240 (46%), Gaps = 3/240 (1%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+  Y   G IEE+   F++    D ++W  +++G+     + +A  VFV M R  ++ N
Sbjct: 592 LVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNN 651

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
            FT  S +KA     ++     VH +  K G +    V N+L+ +YA C  S+ +A   F
Sbjct: 652 NFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCG-SISDAEKQF 710

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
            ++  KN+VSW  +I  Y+  G G   L  F +M+   V  N  +    + AC+  G V 
Sbjct: 711 LEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVD 770

Query: 232 FG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLITWNTIIAG 289
            G     +   ++G          ++DM  R   LS A ++  EM  K D + W T+++ 
Sbjct: 771 KGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSA 830


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/566 (36%), Positives = 318/566 (56%), Gaps = 7/566 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I   +L+  Y   G IE A  +F+     +VV W +M+  Y   +   +++ +F +M   
Sbjct: 281 ITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQAT 340

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT--CCISM 164
            ++PN FT   +L+ C     +     +H ++IK G E  +YV   L+D+Y+   C   +
Sbjct: 341 GIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGC---L 397

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           D AR +   ++ ++ VSWT++I GY         L  FKEM   GV  +    + A  AC
Sbjct: 398 DKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASAC 457

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           A    +  G  IHA V   G+ +++ + N+++++Y R     +A   F E+  KD ITWN
Sbjct: 458 AGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWN 517

Query: 285 TIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +I+G+ +S    + L +F KM       N FTF S I+A A LA +  G+QVH   V+ 
Sbjct: 518 GLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKT 577

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G      +ANALI +Y KCG+I D++ IFSEMS R+ V+W +++     HG G EA++LF
Sbjct: 578 GHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLF 637

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGR 462
           D+M + G++P+ + F+ VL ACSH GLV+EGL YFKSM N Y +NP  + Y CVVD+LGR
Sbjct: 638 DQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGR 697

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AG++  A   +  MP   +  +W  LL ACK H+   +G+LAA  +L+L+P+   +Y++L
Sbjct: 698 AGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLL 757

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           SN YA  GKW    + RK+M+  G +KE G SWIEV++ V  F   D++   +  +Y  L
Sbjct: 758 SNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFL 817

Query: 583 EMLIRHMNETAYEPDIDCLIHDLEGE 608
             L   +++  Y+ +   L H+ E E
Sbjct: 818 SELNDRLSKIGYKQENPNLFHEKEQE 843



 Score =  246 bits (627), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 153/530 (28%), Positives = 265/530 (50%), Gaps = 9/530 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++   LI  Y   GL+ +AR +F E+  RD VSW  M++GY       +A+ ++ +M   
Sbjct: 79  LIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWT 138

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V P  + LSSVL AC   K  +   ++H    K+      +V N+L+ +Y     S   
Sbjct: 139 AVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFG-SFKL 197

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  VF DM + + V++ TLI+G+A  G+G   L +F EM L G+  +  + +  + ACAS
Sbjct: 198 AERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACAS 257

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G +  GK +H+ ++K G   +     S+LD+Y +   +  A+  F+     +++ WN +
Sbjct: 258 VGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLM 317

Query: 287 IAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           +  Y + S  ++   +F +M++    PN FT+  I+  C     +  G+Q+H+  ++ G 
Sbjct: 318 LVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGF 377

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           + ++ ++  LIDMY+K G +  ++KI   +  RD+V+WTSM+ GY  H   +EA+  F E
Sbjct: 378 ESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKE 437

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M   GV PD I   +  +AC+    + +GL+    +       +  I+  +V+L  R GR
Sbjct: 438 MQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGR 497

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
            +EA+ L + +  K DE  W  L+    + RL     +  +++          +  +S I
Sbjct: 498 SEEAFSLFREIEHK-DEITWNGLISGFGQSRLYKQALMVFMKMGQAGAK-YNVFTFISAI 555

Query: 526 YA----AEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKM 571
            A    A+ K  +    R +  G  S+ EV  + I +  K CG I + KM
Sbjct: 556 SALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGK-CGSIEDAKM 604



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 106/383 (27%), Positives = 198/383 (51%), Gaps = 4/383 (1%)

Query: 115 LSSVLKACKGMKSLSNAAL-VHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFND 173
           L+  L+AC+G  +     L +H  ++  GL     + N L+D+YA   +    AR VF +
Sbjct: 45  LTCALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVW-QARQVFKE 103

Query: 174 MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG 233
           +  ++ VSW  +++GYA SG G     ++ +M    V   PY  S  + AC      + G
Sbjct: 104 LSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQG 163

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
           ++IHA V K  F S   V N+++ +Y  F     A + F +M   D +T+NT+I+G+ + 
Sbjct: 164 RMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQC 223

Query: 294 GSSEC-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
           G  EC L +F +M+     P+C T  S++AACA++  L  G+Q+H+ +++ G+  +    
Sbjct: 224 GHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITE 283

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
            +L+D+Y KCG+I  +  IF+     ++V W  M++ YG      ++ E+F +M  +G+ 
Sbjct: 284 GSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIH 343

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
           P++  +  +L  C+  G ++ G +            +  + G ++D+  + G + +A ++
Sbjct: 344 PNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKI 403

Query: 473 IKSMPFKPDESVWGPLLGACKEH 495
           ++ M  K D   W  ++    +H
Sbjct: 404 LE-MLEKRDVVSWTSMIAGYVQH 425



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 127/305 (41%), Gaps = 46/305 (15%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A  LI  Y   G IE+A+ +F EM  R+ VSW  +I   +      +A  +F +M +  
Sbjct: 585 VANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEG 644

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLE-----GSIYVENSLMDVYATCCI 162
           + PN  T   VL AC            H   ++EGL       ++Y  N + D YA C +
Sbjct: 645 LKPNDVTFIGVLAACS-----------HVGLVEEGLSYFKSMSNVYGLNPIPDHYA-CVV 692

Query: 163 -------SMDNARLVFNDMK-WKNDVSWTTLITG-YAHSGNGYGGLGVFKEMLLEGVEMN 213
                   +D AR   ++M    N + W TL++    H     G L    + LLE    +
Sbjct: 693 DILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAA--KHLLELEPHD 750

Query: 214 PYSFSIAVRACASTG-WVS---FGKLIHAAVIKHGFGSN-LPVMNSILDMYC--RFDCLS 266
             S+ +   A A TG W +     K++    I+   G + + V N++   +   R   LS
Sbjct: 751 SASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLS 810

Query: 267 DA-NQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACA 325
           D   ++  E+ ++          GY++    E  N+F + + E+  P  F  +  +A   
Sbjct: 811 DQIYKFLSELNDR------LSKIGYKQ----ENPNLFHEKEQEQKDPTAFVHSEKLAVAF 860

Query: 326 TLAAL 330
            L  L
Sbjct: 861 GLMTL 865


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/587 (34%), Positives = 335/587 (57%), Gaps = 41/587 (6%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
            ++I ++   G +++A  +F++MP+ D  SW  MI+G+      ++A   F +M  +   
Sbjct: 89  NSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFL 148

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
            N ++  S L AC G++ L   + +H +  +      +Y+ ++L+D+Y+ C   ++ A+ 
Sbjct: 149 VNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCG-RVEYAQS 207

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           VF++M  ++ VSW +LIT Y  +G     L +F EM+  GVE +  + +  V ACA+   
Sbjct: 208 VFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISA 267

Query: 230 VSFGKLIHAAVIK-HGFGSNLPVMNSILDMYCRFDCLSDANQYFD--------------- 273
           +  G+ IHA V+K   F ++L + N++LDMY + + +++A   FD               
Sbjct: 268 IKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVS 327

Query: 274 ----------------EMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFT 316
                            M  KD+ITWN +IAG  ++G +E  L +F  +K E   P  +T
Sbjct: 328 GYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYT 387

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGL------DGNLALANALIDMYAKCGNISDSQK 370
           F +++ ACA LA L  G+Q H+ +++ G       D ++ + N+LIDMY KCG++ +  +
Sbjct: 388 FGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCR 447

Query: 371 IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           +F  M ++D V+W +M++GY  +G G +A+E+F +M++SG  PD +  + VL ACSHAGL
Sbjct: 448 VFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCACSHAGL 507

Query: 431 VDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           +DEG  YF+SM   + + P K+ Y C+VDLLGRAG ++EA  LI+ M  +PD  VWG LL
Sbjct: 508 LDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSLL 567

Query: 490 GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKK 549
            ACK HR   LG+    ++L++ P   G Y++LSN+YA    W+   + RK+MR  G  K
Sbjct: 568 AACKVHRNIQLGEYVVKKLLEVDPENSGPYVLLSNMYAENRDWKNVVRVRKLMRQRGVVK 627

Query: 550 EVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEP 596
           + G SWIE++ ++  F+  DK  +  + +Y VL  +++ M +  Y P
Sbjct: 628 QPGCSWIEIQGELNVFMVKDKRHARKKEIYMVLRTILQQMKQAGYVP 674



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/372 (29%), Positives = 183/372 (49%), Gaps = 36/372 (9%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CIS---------- 163
            S +L  C   +S  + + VH   IK       +++N L+DVY  C C+           
Sbjct: 22  FSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLFDRML 81

Query: 164 -------------------MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKE 204
                              +D+A  +F  M   +  SW ++I+G+   G     L  F +
Sbjct: 82  ERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQ 141

Query: 205 MLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264
           M   G  +N YSF  A+ ACA    +  G  IH+ V +  + S++ + ++++DMY +   
Sbjct: 142 MHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGR 201

Query: 265 LSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAA 323
           +  A   FDEMT +  ++WN++I  YE++G   E L +F +M      P+  T  S+++A
Sbjct: 202 VEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSA 261

Query: 324 CATLAALSCGQQVHAGIVR-RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVT 382
           CAT++A+  GQQ+HA +V+      +L L NAL+DMYAKC  I++++ IF  M  R +V+
Sbjct: 262 CATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVS 321

Query: 383 WTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN 442
            TSM+ GY      K A  +F  M+      D I + A++  C+  G  +E L  F+ + 
Sbjct: 322 ETSMVSGYAKASKVKVARYMFSNMMV----KDVITWNALIAGCTQNGENEEALILFRLLK 377

Query: 443 DYNVNPNKEIYG 454
             +V P    +G
Sbjct: 378 RESVWPTHYTFG 389



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/407 (26%), Positives = 193/407 (47%), Gaps = 44/407 (10%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + + L+  Y   G +E A+++FDEM  R  VSW  +I  Y      ++A  +FVEM++  
Sbjct: 188 MGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCG 247

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIK-EGLEGSIYVENSLMDVYATC------ 160
           V P+  TL+SV+ AC  + ++     +H   +K +     + + N+L+D+YA C      
Sbjct: 248 VEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEA 307

Query: 161 ------------------------CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGY 196
                                      +  AR +F++M  K+ ++W  LI G   +G   
Sbjct: 308 RIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENE 367

Query: 197 GGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGF------GSNLP 250
             L +F+ +  E V    Y+F   + ACA+   +  G+  H+ V+KHGF       S++ 
Sbjct: 368 EALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVF 427

Query: 251 VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSER 309
           V NS++DMY +   + +  + F  M EKD ++WN +I GY ++G  ++ L +F KM    
Sbjct: 428 VGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESG 487

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIV-RRGLDGNLALANALIDMYAKCGNISDS 368
            +P+  T   ++ AC+    L  G+     +  + GL         ++D+  + G + ++
Sbjct: 488 EAPDHVTMIGVLCACSHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEA 547

Query: 369 QKIFSEMSDR-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
           + +  EMS + D + W S++     H +    I+L + +VK  +  D
Sbjct: 548 KNLIEEMSMQPDAIVWGSLLAACKVHRN----IQLGEYVVKKLLEVD 590



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 154/316 (48%), Gaps = 33/316 (10%)

Query: 197 GGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSIL 256
            G G+ K +  + + ++   FS  +  CA +        +HA +IK  F S   + N ++
Sbjct: 2   AGNGLVKHLKGDLLFLDSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLI 61

Query: 257 DMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS--------------------- 295
           D+Y +  C+  A + FD M E+++ +WN+II  + KSG                      
Sbjct: 62  DVYGKCGCVDVARKLFDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNS 121

Query: 296 -----------SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
                       E L  F++M    F  N ++F S ++ACA L  L  G Q+H+ + R  
Sbjct: 122 MISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSN 181

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
              ++ + +AL+DMY+KCG +  +Q +F EM+ R  V+W S++  Y  +G   EA+++F 
Sbjct: 182 YLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFV 241

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG-CVVDLLGRA 463
           EM+K GV PD +   +V++AC+    + EG +    +   +   N  I G  ++D+  + 
Sbjct: 242 EMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKC 301

Query: 464 GRVKEAYELIKSMPFK 479
            R+ EA  +   MP +
Sbjct: 302 NRINEARIIFDMMPIR 317



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 124/258 (48%), Gaps = 9/258 (3%)

Query: 40  LIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTV 99
           ++P    +  T+++  Y     ++ AR +F  M  +DV++W  +IAG T    + +A  +
Sbjct: 313 MMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALIL 372

Query: 100 FVEMVRNEVNPNAFTLSSVLKACKGMKSLS------NAALVHGMAIKEGLEGSIYVENSL 153
           F  + R  V P  +T  ++L AC  +  L       +  L HG   + G +  ++V NSL
Sbjct: 373 FRLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSL 432

Query: 154 MDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMN 213
           +D+Y  C  S++N   VF  M  K+ VSW  +I GYA +G G   L VF +ML  G   +
Sbjct: 433 IDMYMKCG-SVENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPD 491

Query: 214 PYSFSIAVRACASTGWVSFGK-LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYF 272
             +    + AC+  G +  G+    +   +HG          ++D+  R   L +A    
Sbjct: 492 HVTMIGVLCACSHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLI 551

Query: 273 DEMT-EKDLITWNTIIAG 289
           +EM+ + D I W +++A 
Sbjct: 552 EEMSMQPDAIVWGSLLAA 569


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/564 (35%), Positives = 326/564 (57%), Gaps = 3/564 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + + L+  Y     +  AR +FD MPERD V W  MI G     C + +  +F EMV +
Sbjct: 144 FVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVAD 203

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V  ++ T+++VL A   ++ L     +  +A+K G     YV   L+ +Y+ C   ++ 
Sbjct: 204 GVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCG-DVNT 262

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           ARL+F  +   + +++  +I+G+  +G     + +F+E+L  G  ++  +    +   + 
Sbjct: 263 ARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSP 322

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G +     IH   +K G   N  V  +   +Y + + +  A   FDE  EK ++ WN +
Sbjct: 323 FGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAM 382

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+GY ++GS+E  +++F +M    F+PN  T T+I++ACA L +LS G+ VH  I    L
Sbjct: 383 ISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIKSENL 442

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           + N+ ++ AL+DMYAKCGNIS++ ++F  MS+++ VTW +M+ GYG HG+G EA++L++E
Sbjct: 443 EPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNE 502

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAG 464
           M+  G  P  + F++VL ACSHAGLV EG + F +M N Y + P  E Y C+VD+LGR+G
Sbjct: 503 MLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACMVDILGRSG 562

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           ++++A E IK MP +P  +VWG LLGAC  H+  ++ +LA+ R+ +L P  +G Y++LSN
Sbjct: 563 QLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTDIARLASERLFELDPGSVGYYVLLSN 622

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           IY+ E  + + A  R++++     K  G + IEV      F++ D+  SH   +Y  LE 
Sbjct: 623 IYSVERNFPKAASIRQVVKKRKLAKSPGCTLIEVNGTPHVFVSGDRSHSHATDIYAKLEK 682

Query: 585 LIRHMNETAYEPDIDCLIHDLEGE 608
           L   M E  Y+ +    +HD+E E
Sbjct: 683 LTGKMREMGYQAETVPALHDVEEE 706



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/445 (26%), Positives = 222/445 (49%), Gaps = 13/445 (2%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN-EV 108
           T L +  FD      AR LF  +P+ D+  + V++ G++  +  + + +++  + RN  +
Sbjct: 48  TKLTQKLFDFSATRHARALFFSVPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNL 107

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS-MDNA 167
           +P+ FT +  + AC   K L    L+H  +I +G   +++V ++L+D+Y  C  S +  A
Sbjct: 108 SPDNFTYAFAVAACSNDKHL---MLLHAHSIIDGYGSNVFVGSALVDLY--CKFSRVVYA 162

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R VF+ M  ++ V W T+I G   +      + +F+EM+ +GV ++  + +  + A A  
Sbjct: 163 RKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAEL 222

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  G  I    +K GFG    V+  ++ +Y +   ++ A   F  +   DLI +N +I
Sbjct: 223 QELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMI 282

Query: 288 AGYEKSGSSEC-LNMFSKM--KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +G+  +G +EC + +F ++    ER S +  T   +I   +    L     +H   V+ G
Sbjct: 283 SGFTANGGTECSVKLFRELLFSGERVSSS--TIVGLIPLHSPFGHLHLACSIHGFCVKSG 340

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           +  N  ++ A   +Y K   I  ++ +F E  ++ +V W +M+ GY  +G  + AI LF 
Sbjct: 341 IILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFK 400

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
           EM+K+   P+ +    +L+AC+  G +  G      +   N+ PN  +   +VD+  + G
Sbjct: 401 EMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCG 460

Query: 465 RVKEAYELIKSMPFKPDESVWGPLL 489
            + EA++L  SM  K +   W  ++
Sbjct: 461 NISEAWQLFDSMSEK-NTVTWNTMI 484



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 96/408 (23%), Positives = 195/408 (47%), Gaps = 44/408 (10%)

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP--YSFSIAVRA 223
           +AR +F  +   +   +  L+ G++ + +    + ++   L     ++P  ++++ AV A
Sbjct: 62  HARALFFSVPKPDIFLFNVLVRGFSLNDSPSSSISLYTH-LRRNTNLSPDNFTYAFAVAA 120

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C++   +    L+HA  I  G+GSN+ V ++++D+YC+F  +  A + FD M E+D + W
Sbjct: 121 CSNDKHL---MLLHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLW 177

Query: 284 NTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           NT+I G  K+    + + +F +M ++    +  T T+++ A A L  L  G  +    ++
Sbjct: 178 NTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALK 237

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            G      +   LI +Y+KCG+++ ++ +F  ++  DL+ + +M+ G+ A+G  + +++L
Sbjct: 238 IGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKL 297

Query: 403 FDEMVKSGVR----------PDRIVFMAVLTACS-HAGLVDEGL-----------KYFKS 440
           F E++ SG R          P    F  +  ACS H   V  G+             +  
Sbjct: 298 FRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNK 357

Query: 441 MND-------YNVNPNKEI--YGCVVDLLGRAGRVKEAYELIKSM---PFKPDESVWGPL 488
           +N+       ++ +P K +  +  ++    + G  + A  L K M    F P+      +
Sbjct: 358 LNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTI 417

Query: 489 LGACKEHRLPNLGKLA--ALRVLDLKPNMMGTYIILSNIYAAEGKWEE 534
           L AC +    + GK     ++  +L+PN+  +   L ++YA  G   E
Sbjct: 418 LSACAQLGSLSFGKWVHHLIKSENLEPNIYVS-TALVDMYAKCGNISE 464



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 97/192 (50%), Gaps = 5/192 (2%)

Query: 237 HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS- 295
           HA  I +G+  +L  +  +      F     A   F  + + D+  +N ++ G+  + S 
Sbjct: 32  HAQFILNGYRFDLATLTKLTQKLFDFSATRHARALFFSVPKPDIFLFNVLVRGFSLNDSP 91

Query: 296 SECLNMFSKMK-SERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
           S  +++++ ++ +   SP+ FT+   +AAC+    L     +HA  +  G   N+ + +A
Sbjct: 92  SSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDKHL---MLLHAHSIIDGYGSNVFVGSA 148

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
           L+D+Y K   +  ++K+F  M +RD V W +M+ G   +    ++I+LF EMV  GVR D
Sbjct: 149 LVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVD 208

Query: 415 RIVFMAVLTACS 426
                AVL A +
Sbjct: 209 SSTVTAVLPAAA 220


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/563 (36%), Positives = 327/563 (58%), Gaps = 3/563 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + + ++  YF    +  AR +FD M ERD V W  M++G    +C ++A  +F +MV+  
Sbjct: 143 VGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGG 202

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           +  ++ T+++VL     ++ L+    +  +A+K G     YV   L  +Y+ C   ++ A
Sbjct: 203 IGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCG-EIETA 261

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           RL+F  +   + VS+  +I+GY  +      + +FKE+L+ G ++N  S    +      
Sbjct: 262 RLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPF 321

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
           G +   + IH    K G  SN  V  ++  +Y R + +  A   FDE +EK L +WN +I
Sbjct: 322 GHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMI 381

Query: 288 AGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           +GY ++G +E  +++F +M+     PN  T TSI++ACA L ALS G+ VH  I R   +
Sbjct: 382 SGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFE 441

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            N+ ++ ALIDMYAKCG+I+++Q++FS M +++ VTW +M+ GYG HG+G EA+ LF+EM
Sbjct: 442 SNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEM 501

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGR 465
           + S V P  + F++VL ACSHAGLV EG + F+SM +D+   P  E Y C+VDLLGRAG 
Sbjct: 502 LHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGN 561

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           + +A + I+ MP +P   VWG LLGAC  H+  NL +LA+ ++ +L P  +G Y++LSNI
Sbjct: 562 LDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFELDPQNVGYYVLLSNI 621

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           Y+A   + E A  R +++     K  G + IEV + +  F + D+       +Y +LE L
Sbjct: 622 YSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQATAIYAMLEKL 681

Query: 586 IRHMNETAYEPDIDCLIHDLEGE 608
              M E  ++ +    +HD+E E
Sbjct: 682 TGKMREAGFQTETGTALHDVEEE 704



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 124/249 (49%), Gaps = 3/249 (1%)

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
           ++D A L+F+ +   +   +  LI  ++ + +    + ++   L +   + P +F+ A  
Sbjct: 57  AIDQASLLFSTIPNPDLFLYNVLIRAFSLNNSPSSAVSLYTH-LRKSTPLEPDNFTYAFV 115

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
              ++       L   +++  GFGS+L V ++I+  Y +F  ++ A + FD M E+D + 
Sbjct: 116 ISGASSLGLGLLLHAHSIVA-GFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVL 174

Query: 283 WNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           WNT+++G  K+    E + +F  M       +  T  +++   A L  L+ G  +    +
Sbjct: 175 WNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAM 234

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           + G   +  +   L  +Y+KCG I  ++ +F ++   DLV++ +M+ GY  +   + ++ 
Sbjct: 235 KVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVR 294

Query: 402 LFDEMVKSG 410
           LF E++ SG
Sbjct: 295 LFKELLVSG 303



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 89/188 (47%), Gaps = 5/188 (2%)

Query: 237 HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS- 295
           HA +I +G  ++L  +  +         +  A+  F  +   DL  +N +I  +  + S 
Sbjct: 30  HAQIILNGLHNDLVTVTKLTHKLSHLKAIDQASLLFSTIPNPDLFLYNVLIRAFSLNNSP 89

Query: 296 SECLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
           S  +++++ + KS    P+ FT+  +I+  ++L             +  G   +L + +A
Sbjct: 90  SSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHAHS---IVAGFGSDLFVGSA 146

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
           ++  Y K   ++ ++K+F  M +RD V W +M+ G   +    EAI +F +MVK G+  D
Sbjct: 147 IVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFD 206

Query: 415 RIVFMAVL 422
                AVL
Sbjct: 207 STTVAAVL 214


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/565 (35%), Positives = 331/565 (58%), Gaps = 3/565 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + + T LI +Y   G +  AR  FD +  +D+VSWT M+A Y   +    +  +F EM  
Sbjct: 76  AFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRM 135

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
              NPN FT + VLKAC G+++ S    VHG  +K   E  +YV   L+D+Y     + D
Sbjct: 136 VGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDAND 195

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
             R VF +M   + + W+ +I+ YA S      + +F +M    V  N ++F+  +++CA
Sbjct: 196 VLR-VFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCA 254

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           S   +  GK +H  V+K G   N+ V N+++D+Y +   L ++ + F E+  ++ +TWNT
Sbjct: 255 SIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNT 314

Query: 286 IIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I GY +SG  +  L+++  M   +   +  T++S++ ACA+LAA+  G Q+H+  ++  
Sbjct: 315 MIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTI 374

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
            D ++ + NALIDMYAKCG+I +++ +F  +S+RD ++W +M+ GY  HG   EA++ F 
Sbjct: 375 YDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQ 434

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRA 463
            M ++   P+++ F+++L+ACS+AGL+D G  YFKSM  DY + P  E Y C+V LLGR+
Sbjct: 435 MMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRS 494

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G + +A +LI+ +P +P+  VW  LLGAC  H   +LG ++A ++L + P    T+++LS
Sbjct: 495 GHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQDEATHVLLS 554

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           NIYA   +W   A  RK M+  G KKE G+SWIE +  V  F   D      + + G+LE
Sbjct: 555 NIYARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFSVGDTSHPDMKMISGMLE 614

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGE 608
            L     +  Y PD++ ++ D+E +
Sbjct: 615 WLNMKTEKAGYVPDLNAVLRDVEDD 639



 Score =  239 bits (609), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 140/459 (30%), Positives = 247/459 (53%), Gaps = 13/459 (2%)

Query: 72  MPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNA 131
           MP+R+ VS+  +I GY      ++   +F  + R     N F  +++LK    ++    A
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 132 ALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAH 191
             +H    K G E + +V  +L+D YA C  S+++AR  F+ +  K+ VSWT ++  YA 
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCG-SVNSARQAFDAIACKDMVSWTGMVACYAE 119

Query: 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251
           +      L +F EM + G   N ++F+  ++AC      S GK +H  V+K  +  +L V
Sbjct: 120 NDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYV 179

Query: 252 MNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERF 310
              +LD+Y +F   +D  + F+EM + D+I W+ +I+ Y +S  S E + +F +M+    
Sbjct: 180 GVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFV 239

Query: 311 SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQK 370
            PN FTF S++ +CA++  L  G+QVH  +++ GLDGN+ ++NAL+D+YAKCG + +S K
Sbjct: 240 LPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMK 299

Query: 371 IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           +F E+ +R+ VTW +M++GY   G G +A+ L+  M++  V+   + + +VL AC+    
Sbjct: 300 LFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAA 359

Query: 431 VDEGLKY----FKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWG 486
           ++ G +      K++ D +V     +   ++D+  + G +K A  L+  M  + DE  W 
Sbjct: 360 MELGTQIHSLSLKTIYDKDV----VVGNALIDMYAKCGSIKNA-RLVFDMLSERDEISWN 414

Query: 487 PLLGACKEHRL--PNLGKLAALRVLDLKPNMMGTYIILS 523
            ++     H L    L     ++  +  PN +    ILS
Sbjct: 415 AMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILS 453



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 103/191 (53%), Gaps = 1/191 (0%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   ++  L+  Y   G ++ +  LF E+P R+ V+W  MI GY      ++A +++  M
Sbjct: 276 GNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNM 335

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           +  +V  +  T SSVL+AC  + ++     +H +++K   +  + V N+L+D+YA C  S
Sbjct: 336 LECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCG-S 394

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           + NARLVF+ +  ++++SW  +I+GY+  G     L  F+ M       N  +F   + A
Sbjct: 395 IKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSA 454

Query: 224 CASTGWVSFGK 234
           C++ G +  G+
Sbjct: 455 CSNAGLLDIGQ 465


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/564 (34%), Positives = 327/564 (57%), Gaps = 5/564 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + + ++  YF     E AR +FD MPERD V W  MI+G++  +    +  VFV+M+   
Sbjct: 150 VGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVG 209

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           ++ ++ TL++VL A   ++       +  +A K+GL   +YV   L+ +Y+ C  S    
Sbjct: 210 LSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSC-KG 268

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R++F+ +   + +S+  +I+GY  +      + +F+E+L  G  +N  +    +      
Sbjct: 269 RILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPF 328

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +   +LI    +K G      V  ++  +YCR + +  A Q FDE  EK L +WN +I
Sbjct: 329 NHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMI 388

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           +GY ++G +   +++F +M  +  SPN  T TSI++ACA L ALS G+ VH  I    L+
Sbjct: 389 SGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLE 447

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            N+ ++ AL+DMYAKCG+I +++++F  M D+++VTW +M+ GYG HGHGKEA++LF EM
Sbjct: 448 SNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEM 507

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGR 465
           ++SG+ P  + F+++L ACSH+GLV EG + F SM N+Y   P  E Y C+VD+LGRAG+
Sbjct: 508 LQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQ 567

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           +  A E I+ MP +P  +VWG LLGAC  H+   +  +A+ R+  L P  +G Y++LSNI
Sbjct: 568 LTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNI 627

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           Y+ +  + + A  R++++     K  G + IE+ D+   F + D+       ++ +LE L
Sbjct: 628 YSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKL 687

Query: 586 IRHMNETAYEPD-IDCLIHDLEGE 608
              M E  Y+ + +   +HD+E E
Sbjct: 688 TGKMREAGYQAETVTTALHDVEDE 711



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 94/429 (21%), Positives = 204/429 (47%), Gaps = 4/429 (0%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR-NEV 108
           T L   +FD G +   R LF+++ + D+  + V+I G++       +  ++  + +   +
Sbjct: 50  TKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNL 109

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
            P+ FT +  + A   ++      L+H  +I +G+  +++V ++++D+Y       + AR
Sbjct: 110 RPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFT-RAELAR 168

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            VF+ M  ++ V W T+I+G++ +      + VF +ML  G+  +  + +  + A A   
Sbjct: 169 KVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQ 228

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
               G  I     K G  S++ V+  ++ +Y +          FD++ + DLI++N +I+
Sbjct: 229 EYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMIS 288

Query: 289 GYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           GY  +  +E  + +F ++ +     N  T   +I        L   + +    ++ G+  
Sbjct: 289 GYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIIL 348

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
             +++ AL  +Y +   +  ++++F E  ++ L +W +M+ GY  +G    AI LF EM+
Sbjct: 349 QPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMM 408

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
              + P+ +   ++L+AC+  G +  G      +    +  N  +   +VD+  + G + 
Sbjct: 409 PQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIV 467

Query: 468 EAYELIKSM 476
           EA +L   M
Sbjct: 468 EARQLFDLM 476



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 88/262 (33%), Positives = 143/262 (54%), Gaps = 5/262 (1%)

Query: 45  PSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
           PS+ +T L   Y     ++ AR LFDE PE+ + SW  MI+GYT     ++A ++F EM+
Sbjct: 350 PSV-STALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMM 408

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
             +++PN  T++S+L AC  + +LS    VHG+   E LE ++YV  +L+D+YA C  S+
Sbjct: 409 -PQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCG-SI 466

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
             AR +F+ M  KN V+W  +ITGY   G+G   L +F EML  G+     +F   + AC
Sbjct: 467 VEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYAC 526

Query: 225 ASTGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLIT 282
           + +G VS G ++ H+    +GF         ++D+  R   L++A ++ + M  E     
Sbjct: 527 SHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAV 586

Query: 283 WNTIIAGYEKSGSSECLNMFSK 304
           W  ++       ++E  N+ SK
Sbjct: 587 WGALLGACMIHKNTEMANVASK 608



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 147/305 (48%), Gaps = 18/305 (5%)

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           NA TLS +L+       +    ++HG  I   L     + +   D+ A       + R +
Sbjct: 23  NATTLSQLLQ-------IQAQLILHG--IHYDLSSITKLTHKFFDLGAVA-----HVRQL 68

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP--YSFSIAVRACASTG 228
           FN +   +   +  LI G++ +G     + ++   L +   + P  ++++ A+ A +   
Sbjct: 69  FNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTH-LRKXTNLRPDNFTYAFAISAASRLE 127

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
               G L+HA  I  G  SNL V ++I+D+Y +F     A + FD M E+D + WNT+I+
Sbjct: 128 DERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMIS 187

Query: 289 GYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           G+ ++   E  + +F  M     S +  T  +++ A A L     G  +     ++GL  
Sbjct: 188 GFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHS 247

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           ++ +   LI +Y+KCG     + +F ++   DL+++ +M+ GY  +   + A+ LF E++
Sbjct: 248 DVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELL 307

Query: 408 KSGVR 412
            SG R
Sbjct: 308 ASGQR 312



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 99/193 (51%), Gaps = 2/193 (1%)

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG- 294
           I A +I HG   +L  +  +   +     ++   Q F+++++ DL  +N +I G+  +G 
Sbjct: 33  IQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGL 92

Query: 295 SSECLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353
               + +++ + K     P+ FT+   I+A + L     G  +HA  +  G+  NL + +
Sbjct: 93  PKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGS 152

Query: 354 ALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP 413
           A++D+Y K      ++K+F  M +RD V W +M+ G+  + + +++I +F +M+  G+  
Sbjct: 153 AIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSF 212

Query: 414 DRIVFMAVLTACS 426
           D      VLTA +
Sbjct: 213 DSTTLATVLTAVA 225


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/564 (34%), Positives = 327/564 (57%), Gaps = 5/564 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + + ++  YF     E AR +FD MPERD V W  MI+G++  +    +  VFV+M+   
Sbjct: 150 VGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVG 209

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           ++ ++ TL++VL A   ++       +  +A K+GL   +YV   L+ +Y+ C  S    
Sbjct: 210 LSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSC-KG 268

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R++F+ +   + +S+  +I+GY  +      + +F+E+L  G  +N  +    +      
Sbjct: 269 RILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPF 328

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +   +LI    +K G      V  ++  +YCR + +  A Q FDE  EK L +WN +I
Sbjct: 329 NHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMI 388

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           +GY ++G +   +++F +M  +  SPN  T TSI++ACA L ALS G+ VH  I    L+
Sbjct: 389 SGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLE 447

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            N+ ++ AL+DMYAKCG+I +++++F  M D+++VTW +M+ GYG HGHGKEA++LF EM
Sbjct: 448 SNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEM 507

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGR 465
           ++SG+ P  + F+++L ACSH+GLV EG + F SM N+Y   P  E Y C+VD+LGRAG+
Sbjct: 508 LQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQ 567

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           +  A E I+ MP +P  +VWG LLGAC  H+   +  +A+ R+  L P  +G Y++LSNI
Sbjct: 568 LTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNI 627

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           Y+ +  + + A  R++++     K  G + IE+ D+   F + D+       ++ +LE L
Sbjct: 628 YSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKL 687

Query: 586 IRHMNETAYEPD-IDCLIHDLEGE 608
              M E  Y+ + +   +HD+E E
Sbjct: 688 TGKMREAGYQAETVTTALHDVEDE 711



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 94/429 (21%), Positives = 204/429 (47%), Gaps = 4/429 (0%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR-NEV 108
           T L   +FD G +   R LF+++ + D+  + V+I G++       +  ++  + +   +
Sbjct: 50  TKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNL 109

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
            P+ FT +  + A   ++      L+H  +I +G+  +++V ++++D+Y       + AR
Sbjct: 110 RPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFT-RAELAR 168

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            VF+ M  ++ V W T+I+G++ +      + VF +ML  G+  +  + +  + A A   
Sbjct: 169 KVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQ 228

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
               G  I     K G  S++ V+  ++ +Y +          FD++ + DLI++N +I+
Sbjct: 229 EYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMIS 288

Query: 289 GYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           GY  +  +E  + +F ++ +     N  T   +I        L   + +    ++ G+  
Sbjct: 289 GYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIIL 348

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
             +++ AL  +Y +   +  ++++F E  ++ L +W +M+ GY  +G    AI LF EM+
Sbjct: 349 QPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMM 408

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
              + P+ +   ++L+AC+  G +  G      +    +  N  +   +VD+  + G + 
Sbjct: 409 PQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIV 467

Query: 468 EAYELIKSM 476
           EA +L   M
Sbjct: 468 EARQLFDLM 476



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 88/262 (33%), Positives = 143/262 (54%), Gaps = 5/262 (1%)

Query: 45  PSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
           PS+ +T L   Y     ++ AR LFDE PE+ + SW  MI+GYT     ++A ++F EM+
Sbjct: 350 PSV-STALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMM 408

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
             +++PN  T++S+L AC  + +LS    VHG+   E LE ++YV  +L+D+YA C  S+
Sbjct: 409 -PQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCG-SI 466

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
             AR +F+ M  KN V+W  +ITGY   G+G   L +F EML  G+     +F   + AC
Sbjct: 467 VEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYAC 526

Query: 225 ASTGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLIT 282
           + +G VS G ++ H+    +GF         ++D+  R   L++A ++ + M  E     
Sbjct: 527 SHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAV 586

Query: 283 WNTIIAGYEKSGSSECLNMFSK 304
           W  ++       ++E  N+ SK
Sbjct: 587 WGALLGACMIHKNTEMANVASK 608



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 147/305 (48%), Gaps = 18/305 (5%)

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           NA TLS +L+       +    ++HG  I   L     + +   D+ A       + R +
Sbjct: 23  NATTLSQLLQ-------IQAQLILHG--IHYDLSSITKLTHKFFDLGAVA-----HVRQL 68

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP--YSFSIAVRACASTG 228
           FN +   +   +  LI G++ +G     + ++   L +   + P  ++++ A+ A +   
Sbjct: 69  FNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTH-LRKKTNLRPDNFTYAFAISAASRLE 127

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
               G L+HA  I  G  SNL V ++I+D+Y +F     A + FD M E+D + WNT+I+
Sbjct: 128 DERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMIS 187

Query: 289 GYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           G+ ++   E  + +F  M     S +  T  +++ A A L     G  +     ++GL  
Sbjct: 188 GFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHS 247

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           ++ +   LI +Y+KCG     + +F ++   DL+++ +M+ GY  +   + A+ LF E++
Sbjct: 248 DVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELL 307

Query: 408 KSGVR 412
            SG R
Sbjct: 308 ASGQR 312



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 99/193 (51%), Gaps = 2/193 (1%)

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG- 294
           I A +I HG   +L  +  +   +     ++   Q F+++++ DL  +N +I G+  +G 
Sbjct: 33  IQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGL 92

Query: 295 SSECLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353
               + +++ + K     P+ FT+   I+A + L     G  +HA  +  G+  NL + +
Sbjct: 93  PKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGS 152

Query: 354 ALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP 413
           A++D+Y K      ++K+F  M +RD V W +M+ G+  + + +++I +F +M+  G+  
Sbjct: 153 AIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSF 212

Query: 414 DRIVFMAVLTACS 426
           D      VLTA +
Sbjct: 213 DSTTLATVLTAVA 225


>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 755

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/561 (34%), Positives = 325/561 (57%), Gaps = 16/561 (2%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T L+  Y   G++E A  +FD +P R+V +WT ++ GY   +    A  +F++M+     
Sbjct: 103 TFLVNVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAY 162

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P+ +TL  VL AC  ++S+     VH   IK  ++    + NSL   Y+     ++ A  
Sbjct: 163 PSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKF-RRLEFAIK 221

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
            F  +K K+ +SWT++I+    +G     L  F +ML +G++ N Y+ +  + AC     
Sbjct: 222 AFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLT 281

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           +  G  IH+  IK G+GS++ + NSI+ +Y +   L +A + F+ M   +L+TWN +IAG
Sbjct: 282 LDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAG 341

Query: 290 Y-------------EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQV 336
           +              KSGS+  L MF K+      P+ FTF+S+++ C+ L AL  G+Q+
Sbjct: 342 HAKMMDLAEDDVAAHKSGST-ALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQI 400

Query: 337 HAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHG 396
           H  I++ G+  ++ +  AL+ MY KCG+I  + K F EM  R +++WTSM+ G+  HG  
Sbjct: 401 HGQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLS 460

Query: 397 KEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGC 455
           ++A++LF++M   G++P+++ F+ VL+ACSHAGL DE L YF+ M   YN+ P  + + C
Sbjct: 461 QQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFAC 520

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM 515
           ++D+  R GRV+EA++++  M F+P+E++W  L+  C+ H   +LG  AA ++L LKP  
Sbjct: 521 LIDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLLKLKPKD 580

Query: 516 MGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHT 575
           + TY+ L N++ + G+W++ +K RK+M+     K    SWI +++KV  F  NDK    +
Sbjct: 581 VETYVSLLNMHISAGRWKDVSKVRKLMKEEKVGKLKDWSWISIKEKVYSFKPNDKSHCQS 640

Query: 576 QYVYGVLEMLIRHMNETAYEP 596
             +Y +LE ++  +    YEP
Sbjct: 641 LEMYKLLETVLNEVKALGYEP 661



 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 118/420 (28%), Positives = 222/420 (52%), Gaps = 16/420 (3%)

Query: 118 VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK 177
           +L+ C      + A ++HG  +K G    ++V   L++VY+ C + M++A  VF+++  +
Sbjct: 70  LLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGV-MESAHKVFDNLPRR 128

Query: 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIH 237
           N  +WTTL+TGY  + +    L +F +ML  G   + Y+  I + AC+S   + FGK +H
Sbjct: 129 NVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVH 188

Query: 238 AAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SS 296
           A +IK+    +  + NS+   Y +F  L  A + F  + EKD+I+W ++I+    +G ++
Sbjct: 189 AYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAA 248

Query: 297 ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALI 356
             L+ F  M S+   PN +T TS+++AC  +  L  G Q+H+  ++ G   ++ + N+++
Sbjct: 249 RSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIM 308

Query: 357 DMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY-----------GAHGHGKEAIELFDE 405
            +Y KCG + ++QK+F  M   +LVTW +M+ G+            AH  G  A+ +F +
Sbjct: 309 YLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQK 368

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           + +SG++PD   F +VL+ CS+   +++G +    +    V  +  +   +V +  + G 
Sbjct: 369 LYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGS 428

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNMMGTYIILS 523
           + +A +    MP +   S W  ++     H L    L     +R++ +KPN +    +LS
Sbjct: 429 IDKASKAFLEMPSRTMIS-WTSMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLS 487



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 136/270 (50%), Gaps = 19/270 (7%)

Query: 44  GPSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGY-----------TSFN 91
           G SIL  N ++  Y   G + EA+ LF+ M   ++V+W  MIAG+            +  
Sbjct: 298 GSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHK 357

Query: 92  CHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVEN 151
             + A  +F ++ R+ + P+ FT SSVL  C  + +L     +HG  IK G+   + V  
Sbjct: 358 SGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGT 417

Query: 152 SLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVE 211
           +L+ +Y  C  S+D A   F +M  +  +SWT++ITG+A  G     L +F++M L G++
Sbjct: 418 ALVSMYNKCG-SIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVGIK 476

Query: 212 MNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNS---ILDMYCRFDCLSDA 268
            N  +F   + AC+  G ++   L +  +++  +    PVM+    ++DMY R   + +A
Sbjct: 477 PNQVTFVGVLSACSHAG-LADEALYYFELMQKQYNIK-PVMDHFACLIDMYLRLGRVEEA 534

Query: 269 NQYFDEMT-EKDLITWNTIIAGYEKSGSSE 297
                +M  E +   W+ +IAG    G S+
Sbjct: 535 FDVVHKMNFEPNETIWSMLIAGCRSHGKSD 564



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 73/168 (43%), Gaps = 15/168 (8%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++ T L+  Y   G I++A   F EMP R ++SWT MI G+       QA  +F +M   
Sbjct: 414 VVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLV 473

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM-- 164
            + PN  T   VL AC      S+A L         L    Y    +MD +A C I M  
Sbjct: 474 GIKPNQVTFVGVLSAC------SHAGLADEALYYFELMQKQYNIKPVMDHFA-CLIDMYL 526

Query: 165 -----DNARLVFNDMKWK-NDVSWTTLITGYAHSGNGYGGLGVFKEML 206
                + A  V + M ++ N+  W+ LI G    G    G    +++L
Sbjct: 527 RLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLL 574


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/583 (35%), Positives = 336/583 (57%), Gaps = 30/583 (5%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+  Y   G +++++ LF+   +RD+VSW  MI+ ++  +  ++A   F  MV   V  +
Sbjct: 237 LMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELD 296

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEG--LEGSIYVENSLMDVYATCCISMDNARL 169
             T++SVL AC  ++ L     +H   ++    +E S +V ++L+D+Y  C   +++ R 
Sbjct: 297 GVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENS-FVGSALVDMYCNC-RQVESGRR 354

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEML-LEGVEMNPYSFSIAVRACASTG 228
           VF+ +  +    W  +I+GYA +G     L +F EM+ + G+  N  + +  + AC    
Sbjct: 355 VFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCE 414

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
             S  + IH   +K GF  +  V N+++DMY R   +  +   FD M  +D ++WNT+I 
Sbjct: 415 AFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMIT 474

Query: 289 GYEKSGS-SECLNMFSKMKSER-----------------FSPNCFTFTSIIAACATLAAL 330
           GY  SG  S  L +  +M+                    + PN  T  +++  CA LAA+
Sbjct: 475 GYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAI 534

Query: 331 SCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY 390
           + G+++HA  +R  L  ++ + +AL+DMYAKCG ++ S+++F+EM +++++TW  +++  
Sbjct: 535 AKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMAC 594

Query: 391 GAHGHGKEAIELFDEMVKSGVR-----PDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDY 444
           G HG G+EA+ELF  MV    R     P+ + F+ V  ACSH+GL+ EGL  F  M +D+
Sbjct: 595 GMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDH 654

Query: 445 NVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDE-SVWGPLLGACKEHRLPNLGKL 503
            V P  + Y CVVDLLGRAG+++EAYEL+ +MP + D+   W  LLGAC+ H+   LG++
Sbjct: 655 GVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEV 714

Query: 504 AALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVC 563
           AA  +L L+PN+   Y++LSNIY++ G W +  + RK MR MG KKE G SWIE RD+V 
Sbjct: 715 AAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVH 774

Query: 564 GFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
            F+A D     ++ ++G LE L   M +  Y PD  C++H+++
Sbjct: 775 KFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVD 817



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 134/480 (27%), Positives = 224/480 (46%), Gaps = 44/480 (9%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A  L+  Y   G I +   +FD + +RD VSW   IA    F    QA   F  M    
Sbjct: 130 VANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMEN 189

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEG--------SIYVENSLMDVYAT 159
           +  ++FTL SV  AC      SN  ++HG+ + + L G          +  N+LM +YA 
Sbjct: 190 MELSSFTLVSVALAC------SNLGVMHGLRLGKQLHGYSLRVGDQKTFTNNALMAMYAK 243

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
               +D+++ +F     ++ VSW T+I+ ++ S      L  F+ M+LEGVE++  + + 
Sbjct: 244 LG-RVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIAS 302

Query: 220 AVRACASTGWVSFGKLIHAAVIKHG-FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK 278
            + AC+    +  GK IHA V+++     N  V ++++DMYC    +    + FD +  +
Sbjct: 303 VLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGR 362

Query: 279 DLITWNTIIAGYEKSGSSE-CLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQV 336
            +  WN +I+GY ++G  E  L +F +M K     PN  T  S++ AC    A S  + +
Sbjct: 363 RIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESI 422

Query: 337 HAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHG 396
           H   V+ G   +  + NAL+DMY++ G +  S+ IF  M  RD V+W +M+ GY   G  
Sbjct: 423 HGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRY 482

Query: 397 KEAIELFDEMVK-----------------SGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439
             A+ L  EM +                    +P+ I  M VL  C+    + +G    K
Sbjct: 483 SNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKG----K 538

Query: 440 SMNDYNVN----PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            ++ Y +      +  +   +VD+  + G +  +  +   MP K +   W  L+ AC  H
Sbjct: 539 EIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNK-NVITWNVLIMACGMH 597



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/428 (25%), Positives = 209/428 (48%), Gaps = 18/428 (4%)

Query: 73  PERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAA 132
           P R   SW   +   T  N   +A + ++EM  +   P+ F   +VLKA  G++ L    
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 133 LVHGMAIKEGL-EGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAH 191
            +H  A+K G    S+ V N+L+++Y  C    D  + VF+ +  ++ VSW + I     
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCK-VFDRITDRDQVSWNSFIAALCR 171

Query: 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG---WVSFGKLIHAAVIKHGFGSN 248
                  L  F+ M +E +E++ ++      AC++ G    +  GK +H   ++ G    
Sbjct: 172 FEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKT 231

Query: 249 LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKS 307
               N+++ MY +   + D+   F+   ++D+++WNT+I+ + +S   SE L  F  M  
Sbjct: 232 F-TNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVL 290

Query: 308 ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG-LDGNLALANALIDMYAKCGNIS 366
           E    +  T  S++ AC+ L  L  G+++HA ++R   L  N  + +AL+DMY  C  + 
Sbjct: 291 EGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVE 350

Query: 367 DSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK-SGVRPDRIVFMAVLTAC 425
             +++F  +  R +  W +M+ GY  +G  ++A+ LF EM+K +G+ P+     +V+ AC
Sbjct: 351 SGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPAC 410

Query: 426 SHAGLVDEGLKYFKSMNDYNV----NPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481
            H     E     +S++ Y V      ++ +   ++D+  R G++  +  +  SM  + D
Sbjct: 411 VHC----EAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVR-D 465

Query: 482 ESVWGPLL 489
              W  ++
Sbjct: 466 RVSWNTMI 473



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 121/451 (26%), Positives = 220/451 (48%), Gaps = 60/451 (13%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S + + L+  Y +   +E  R +FD +  R +  W  MI+GY       +A  +F+EM++
Sbjct: 333 SFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIK 392

Query: 106 -NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
              + PN  T++SV+ AC   ++ SN   +HG A+K G +   YV+N+LMD+Y+     M
Sbjct: 393 VAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMG-KM 451

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEM---------------LLEG 209
           D +  +F+ M+ ++ VSW T+ITGY  SG     L +  EM                 +G
Sbjct: 452 DISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKG 511

Query: 210 VEMNPYSFSI--AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSD 267
               P + ++   +  CA+   ++ GK IHA  I++   S++ V ++++DMY +  CL+ 
Sbjct: 512 GPYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNL 571

Query: 268 ANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSE-----RFSPNCFTFTSII 321
           + + F+EM  K++ITWN +I      G   E L +F  M +E        PN  TF ++ 
Sbjct: 572 SRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVF 631

Query: 322 AACATLAALSCGQQVHAGIVRRGLDGNLALAN------------ALIDMYAKCGNISDSQ 369
           AAC+           H+G++  GL+    + +             ++D+  + G + ++ 
Sbjct: 632 AACS-----------HSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAY 680

Query: 370 KIFSEM-SDRDLV-TWTSMMIGYGAHGHGKEAIELFDEMVKS--GVRPDRIVFMAVLTAC 425
           ++ + M ++ D V  W+S++     H    + +EL +   K+   + P+      +L+  
Sbjct: 681 ELVNTMPAEFDKVGAWSSLLGACRIH----QNVELGEVAAKNLLHLEPNVASHYVLLSNI 736

Query: 426 -SHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455
            S AGL ++ ++  K+M    V   K+  GC
Sbjct: 737 YSSAGLWNKAMEVRKNMRQMGV---KKEPGC 764


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/627 (33%), Positives = 342/627 (54%), Gaps = 71/627 (11%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y  +G  E +R L  EMP+ D VSWT +I GY  F   + A  +F +M+   V P+
Sbjct: 82  LISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPS 141

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
            FT+S+VL +C   ++L     +H   +K GL   + V  SL+++YA C   +  A++VF
Sbjct: 142 QFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVI-AKVVF 200

Query: 172 NDMKWKND-------------------------------VSWTTLITGYAHSGNGYGGLG 200
           + M  KN                                VSW ++I+GY+  G     L 
Sbjct: 201 DRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALA 260

Query: 201 VFKEMLLEGVEMNPYSFSIA--VRACASTGWVSFGKLIHAAVIK---------------- 242
           +F +ML E   + P +F++A  + ACA+   ++ GK IHA +++                
Sbjct: 261 IFSKMLNEP-SLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISM 319

Query: 243 ---------------HGFGSNLPVM--NSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
                          H   SNL ++   S+LD Y +   +  A + F+++ ++D++ W  
Sbjct: 320 YAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTA 379

Query: 286 IIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I GY ++G  ++ L +F  M +E   PN +T  ++++  ++L  L  G+Q+HA  ++ G
Sbjct: 380 MIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAG 439

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFS-EMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
                ++ NALI MYAK GNI+ ++++F      +++V+WTSM++    HG GKEAI LF
Sbjct: 440 ESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLF 499

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGR 462
           + M+  G++PD I ++ VL+AC+H GLV++G KY+  M + + + P    Y C++DL GR
Sbjct: 500 ERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGR 559

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AG ++EAY  I+SMP +PD   WG LL +CK H+  +L K+AA R+L + P   G Y+ L
Sbjct: 560 AGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLAL 619

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           +N+Y+A GKWE  A+ RK+M+  G +KE G+SWI ++++V  F   D +      +Y ++
Sbjct: 620 ANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLM 679

Query: 583 EMLIRHMNETAYEPDIDCLIHDLEGET 609
             +   + +  + PD + ++HDLE E 
Sbjct: 680 AEIWEEIKKMGFIPDTESVLHDLEEEV 706



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 130/461 (28%), Positives = 215/461 (46%), Gaps = 98/461 (21%)

Query: 134 VHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSG 193
           VH   IK+GL   +Y+ N+LM  YA    S+  A  VF++M  K+  SW TLI+GYA  G
Sbjct: 32  VHCQIIKKGLHLGVYLMNNLMTFYAKTG-SLRFAHHVFDEMPLKSTFSWNTLISGYAKQG 90

Query: 194 N------------------------GYGGLGVFK-------EMLLEGVEMNPYSFSIAVR 222
           N                        GY   G+F        +M+ E V  + ++ S  + 
Sbjct: 91  NFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLS 150

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR----------FDCLSDAN--- 269
           +CA+   +  G+ IH+ V+K G GS +PV  S+L+MY +          FD ++  N   
Sbjct: 151 SCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNIST 210

Query: 270 ------------------QYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSE-R 309
                               F++M ++D+++WN++I+GY + G + E L +FSKM +E  
Sbjct: 211 WNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPS 270

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC------- 362
             P+ FT  SI++ACA L  L+ G+Q+HA I+R   + + A+ NALI MYAK        
Sbjct: 271 LKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIAR 330

Query: 363 --------------------------GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHG 396
                                     GN+  +++IF+++ DRD+V WT+M++GY  +G  
Sbjct: 331 LIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLW 390

Query: 397 KEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCV 456
            +A+ELF  MV  G  P+     A+L+  S   +++ G +   S      +    +   +
Sbjct: 391 NDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNAL 450

Query: 457 VDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
           + +  + G +  A  +      K +   W  ++ A  +H L
Sbjct: 451 IAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGL 491



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 147/310 (47%), Gaps = 72/310 (23%)

Query: 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEK 292
           G+ +H  +IK G    + +MN+++  Y +   L  A+  FDEM  K   +WNT+I+GY K
Sbjct: 29  GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAK 88

Query: 293 SGSSE--------------------------------CLNMFSKMKSERFSPNCFTFTSI 320
            G+ E                                 + MF+KM SER  P+ FT +++
Sbjct: 89  QGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNV 148

Query: 321 IAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG---------------NI 365
           +++CA    L  G+++H+ +V+ GL   + +A +L++MYAKCG               NI
Sbjct: 149 LSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNI 208

Query: 366 SDSQKI----------------FSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV-K 408
           S    +                F +M DRD+V+W SM+ GY   G+  EA+ +F +M+ +
Sbjct: 209 STWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNE 268

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCV----VDLLGRAG 464
             ++PD     ++L+AC++     E L   K ++ Y +    E  G V    + +  ++G
Sbjct: 269 PSLKPDNFTLASILSACANL----EKLNIGKQIHAYILRAETETSGAVGNALISMYAKSG 324

Query: 465 RVKEAYELIK 474
            V+ A  +++
Sbjct: 325 GVEIARLIVE 334



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 100/390 (25%), Positives = 176/390 (45%), Gaps = 61/390 (15%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I  T+L+  Y   G ++ AR +F+++ +RDVV+WT MI GY      N A  +F  MV  
Sbjct: 344 IAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNE 403

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
              PN++TL+++L     +  L +   +H  AIK G   +  V N+L+ +YA    +++ 
Sbjct: 404 GPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTG-NINV 462

Query: 167 ARLVFNDMKWKND-VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           A+ VF+    K + VSWT++I   A  G G   + +F+ ML  G++ +  ++   + AC 
Sbjct: 463 AKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACT 522

Query: 226 STGWVSFGKLIHAAVIK-HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLITW 283
             G V  G+  +  + + H     L     ++D+Y R   L +A  + + M  E D I W
Sbjct: 523 HVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAW 582

Query: 284 NTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +++A  +   +++     +K+ +ER                              ++  
Sbjct: 583 GSLLASCKIHKNAD----LAKVAAERLL----------------------------LIDP 610

Query: 344 GLDGN-LALANALIDMYAKCGNISDSQKIFSEMSDRDL-----VTWTSMMIGYGAHGHGK 397
           G  G  LALAN    +Y+ CG   ++ +    M DR +     ++W  + I    H  G 
Sbjct: 611 GNSGAYLALAN----VYSACGKWENAAQTRKLMKDRGVRKEKGISW--IHIKNEVHAFGV 664

Query: 398 EAI-------------ELFDEMVKSGVRPD 414
           E +             E+++E+ K G  PD
Sbjct: 665 EDVIHPQKDEIYKLMAEIWEEIKKMGFIPD 694



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 31/151 (20%)

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLD----------------GNLALA-------- 352
           F  I+     +     G+ VH  I+++GL                 G+L  A        
Sbjct: 13  FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMP 72

Query: 353 -------NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
                  N LI  YAK GN   S+++  EM D D V+WT++++GY   G    AI +F +
Sbjct: 73  LKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAK 132

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
           M+   V P +     VL++C+    +D G K
Sbjct: 133 MISERVPPSQFTVSNVLSSCAANQTLDIGRK 163


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/596 (33%), Positives = 338/596 (56%), Gaps = 35/596 (5%)

Query: 45  PSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           P++   N L+ +     L+ +   LF  M +RD+VS+  +IAG++    H QA  V++ +
Sbjct: 70  PNLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLAL 129

Query: 104 VR--NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC- 160
           ++  + V P+  T+S+++ A   +   +     H   ++ G   + +V + L+D+YA   
Sbjct: 130 LQADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMS 189

Query: 161 -----------------------------CISMDNARLVFNDMKWKNDVSWTTLITGYAH 191
                                        C  ++ AR +F  M  ++ ++WTT++TG+  
Sbjct: 190 LVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQ 249

Query: 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251
           +G     L +F+ M  +G+ ++ Y+F   + AC +   +  GK IHA +I+  +  N+ V
Sbjct: 250 NGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFV 309

Query: 252 MNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERF 310
            ++++DMY +   +  A   F  MT K++I+W  +I GY ++G S E + +FS+M+ +  
Sbjct: 310 GSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGI 369

Query: 311 SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQK 370
            P+ +T  S+I++CA LA+L  G Q H   +  GL   + ++NAL+ +Y KCG+I D+ +
Sbjct: 370 DPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHR 429

Query: 371 IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           +F EMS  D V+WT+++ GY   G  KE I+LF++M+  GV+PD + F+ VL+ACS AG 
Sbjct: 430 LFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGF 489

Query: 431 VDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           V++G  YF SM  D+ + P  + Y C++DL  R+G++KEA E IK MP  PD   WG LL
Sbjct: 490 VEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLL 549

Query: 490 GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKK 549
            AC+      +GK AA  +L++ P    +Y++L +++AA+G+W E A+ R+ MR    KK
Sbjct: 550 SACRLRGDMEIGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKK 609

Query: 550 EVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDL 605
           E G SWI+ ++KV  F A+D+    ++ +Y  LE L   M E  Y+PD+  ++HD+
Sbjct: 610 EPGCSWIKYKNKVHIFSADDQSHPCSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDV 665


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/565 (37%), Positives = 316/565 (55%), Gaps = 36/565 (6%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S L   L+++Y     +  AR +FDE+PER+V+   VMI  Y +   + +   VF  M  
Sbjct: 74  SSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCG 133

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             V P+ +T   VLKAC    ++     +HG A K GL  +++V N L+ +Y  C   + 
Sbjct: 134 CNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGF-LS 192

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            ARLV ++M  ++ VSW +L+ GYA +      L V +EM  E V+++  + ++A     
Sbjct: 193 EARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREM--ESVKISHDAGTMA----- 245

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
                    L+ A        SN    N    MY +          F +M +K L++WN 
Sbjct: 246 --------SLLPAV-------SNTTTENV---MYVK--------DMFFKMGKKSLVSWNV 279

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I  Y K+    E + ++S+M+++ F P+  + TS++ AC   +ALS G+++H  I R+ 
Sbjct: 280 MIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKK 339

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           L  NL L NALIDMYAKCG +  ++ +F  M  RD+V+WT+M+  YG  G G +A+ LF 
Sbjct: 340 LIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFS 399

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRA 463
           ++  SG+ PD I F+  L ACSHAGL++EG   FK M D Y + P  E   C+VDLLGRA
Sbjct: 400 KLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRA 459

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G+VKEAY  I+ M  +P+E VWG LLGAC+ H   ++G LAA ++  L P   G Y++LS
Sbjct: 460 GKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLS 519

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           NIYA  G+WEE    R IM+  G KK  G S +EV   +  F+  D+    +  +Y  L+
Sbjct: 520 NIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELD 579

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGE 608
           +L++ M E  Y PD +  +HD+E E
Sbjct: 580 VLVKKMKELGYVPDSESALHDVEEE 604



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 177/392 (45%), Gaps = 39/392 (9%)

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
           +E+ +       F L  VL     +++L     VH   I E L  +  +   LM  YA+ 
Sbjct: 31  LELDQKSPQETVFLLGQVLDTYPDIRTLRT---VHSRIILEDLRCNSSLGVKLMRAYASL 87

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
              + +AR VF+++  +N +    +I  Y ++G    G+ VF  M    V  + Y+F   
Sbjct: 88  -KDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCV 146

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           ++AC+ +G +  G+ IH +  K G  S L V N ++ MY +   LS+A    DEM+ +D+
Sbjct: 147 LKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDV 206

Query: 281 ITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           ++WN+++ GY ++    + L +  +M+S + S +  T  S++ A +              
Sbjct: 207 VSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVS-------------- 252

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
                   N    N    MY K         +F +M  + LV+W  M+  Y  +    EA
Sbjct: 253 --------NTTTENV---MYVK--------DMFFKMGKKSLVSWNVMIGVYMKNAMPVEA 293

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL 459
           +EL+  M   G  PD +   +VL AC     +  G K    +    + PN  +   ++D+
Sbjct: 294 VELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDM 353

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
             + G +++A ++ ++M  + D   W  ++ A
Sbjct: 354 YAKCGCLEKARDVFENMKSR-DVVSWTAMISA 384



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 153/328 (46%), Gaps = 14/328 (4%)

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
           + +H+ +I      N  +   ++  Y     ++ A + FDE+ E+++I  N +I  Y  +
Sbjct: 59  RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118

Query: 294 G-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
           G   E + +F  M      P+ +TF  ++ AC+    +  G+++H    + GL   L + 
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVG 178

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
           N L+ MY KCG +S+++ +  EMS RD+V+W S+++GY  +    +A+E+  EM    + 
Sbjct: 179 NGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKIS 238

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
            D     ++L A S+     E + Y K M       +   +  ++ +  +     EA EL
Sbjct: 239 HDAGTMASLLPAVSNT--TTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVEL 296

Query: 473 IKSMP---FKPDESVWGPLLGACKEHRLPNLGKL--AALRVLDLKPNMMGTYIILSNIYA 527
              M    F+PD      +L AC +    +LGK     +    L PN++    ++ ++YA
Sbjct: 297 YSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALI-DMYA 355

Query: 528 AEGKWEEFAKFRKIMRGMGSKKEVGMSW 555
             G  E   K R +   M S+  V  SW
Sbjct: 356 KCGCLE---KARDVFENMKSRDVV--SW 378


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/558 (36%), Positives = 316/558 (56%), Gaps = 5/558 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y   G I  AR +FD MP RD +SW  MI+GY   +   +   +F  M    V+P+
Sbjct: 236 LITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPD 295

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
             T++SV+ AC+ +        VHG  IK G    + V NSL+ ++++     D A +VF
Sbjct: 296 LMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVG-CWDEAEMVF 354

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           + M++K+ VSWT +I+GY  +G     +  +  M  EGV  +  + +  + ACA  G + 
Sbjct: 355 SKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLD 414

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            G ++H    + G  S + V NS++DMY +  C+  A + F  +  K++I+W +II G  
Sbjct: 415 KGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLR 474

Query: 292 KSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
            +  S E L  F +M      PN  T  S+++ACA + ALSCG+++HA  +R GL  +  
Sbjct: 475 LNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGF 533

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           L NAL+DMY +CG +  +   F+   ++D+ +W  ++ GY   G G  A+ELF +M++S 
Sbjct: 534 LPNALLDMYVRCGRMEPAWNQFNS-CEKDVASWNILLTGYAQQGKGGLAVELFHKMIESD 592

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
           V PD I F ++L ACS +G+V +GL+YF+SM + +++ PN + Y  VVDLLGRAGR+++A
Sbjct: 593 VNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDA 652

Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529
           YE IK MP  PD ++WG LL AC+ ++   LG+LAA  + ++    +G YI+L N+YA  
Sbjct: 653 YEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADS 712

Query: 530 GKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHM 589
           GKW+E A+ RKIMR      + G SW+EV  +V  F+  D      + +  VLE     M
Sbjct: 713 GKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEKM 772

Query: 590 NETAYEPDIDCLIHDLEG 607
             T      D    D++ 
Sbjct: 773 EATGLSMSKDSRRDDIDA 790



 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 131/443 (29%), Positives = 236/443 (53%), Gaps = 5/443 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L   L+  +   G + EA  +F +M ERD+ SW V++ GY      ++A  ++  M+   
Sbjct: 131 LGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVG 190

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + P+ +T   VL+ C G+  L+    VH   I+ G E  + V N+L+ +Y  C   + +A
Sbjct: 191 IRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCG-DIFSA 249

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           RLVF+ M  ++ +SW  +I+GY  +     GL +F  M    V+ +  + +  + AC + 
Sbjct: 250 RLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEAL 309

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
           G    G+ +H  VIK GF + + V NS++ M+    C  +A   F +M  KDL++W  +I
Sbjct: 310 GDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMI 369

Query: 288 AGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           +GYEK+G  E  +  ++ M+ E   P+  T  S+++ACA L  L  G  +H    R GL 
Sbjct: 370 SGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLT 429

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
             + +AN+LIDMY+KC  I  + ++F  + ++++++WTS+++G   +    EA+  F +M
Sbjct: 430 SYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQM 489

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
           + S ++P+ +  ++VL+AC+  G +  G +         +  +  +   ++D+  R GR+
Sbjct: 490 ILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRM 548

Query: 467 KEAYELIKSMPFKPDESVWGPLL 489
           + A+    S   + D + W  LL
Sbjct: 549 EPAWNQFNSC--EKDVASWNILL 569



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 214/418 (51%), Gaps = 2/418 (0%)

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           +V+    T  ++L+ C+  ++ S  + VH    K      + + N+L+ ++      +  
Sbjct: 89  QVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFG-DLVE 147

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  VF  M  ++  SW  L+ GYA +G     L ++  ML  G+  + Y+F   +R C  
Sbjct: 148 AWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGG 207

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              ++ G+ +H  VI++GF S++ V+N+++ MY +   +  A   FD M  +D I+WN +
Sbjct: 208 LPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAM 267

Query: 287 IAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+GY E     E L +F  M+     P+  T TS+I+AC  L     G++VH  +++ G 
Sbjct: 268 ISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGF 327

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
              +++ N+LI M++  G   +++ +FS+M  +DLV+WT+M+ GY  +G  ++A+E +  
Sbjct: 328 VAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTI 387

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M   GV PD I   +VL+AC+  GL+D+G+   +  +   +     +   ++D+  +   
Sbjct: 388 MEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRC 447

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           + +A E+   +P K   S    +LG    +R           +L LKPN +    +LS
Sbjct: 448 IDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILSLKPNSVTLVSVLS 505



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 105/341 (30%), Positives = 180/341 (52%), Gaps = 8/341 (2%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
           +LI+ +   G  +EA  +F +M  +D+VSWT MI+GY       +A   +  M    V P
Sbjct: 336 SLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVP 395

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNARL 169
           +  T++SVL AC G+  L    ++H  A + GL   + V NSL+D+Y+ C CI  D A  
Sbjct: 396 DEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCI--DKALE 453

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           VF+ +  KN +SWT++I G   +   +  L  F++M+L  ++ N  +    + ACA  G 
Sbjct: 454 VFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMIL-SLKPNSVTLVSVLSACARIGA 512

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           +S GK IHA  ++ G G +  + N++LDMY R   +  A   F+   EKD+ +WN ++ G
Sbjct: 513 LSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNS-CEKDVASWNILLTG 571

Query: 290 YEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-GLDG 347
           Y + G     + +F KM     +P+  TFTS++ AC+    ++ G +    +  +  +  
Sbjct: 572 YAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAP 631

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMM 387
           NL    +++D+  + G + D+ +   +M  D D   W +++
Sbjct: 632 NLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALL 672



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 131/248 (52%), Gaps = 15/248 (6%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAG----YTSFNCHNQAWTVFVE 102
           I+A +LI  Y     I++A  +F  +P ++V+SWT +I G    Y SF    +A   F +
Sbjct: 433 IVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSF----EALFFFQQ 488

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M+ + + PN+ TL SVL AC  + +LS    +H  A++ GL    ++ N+L+D+Y  C  
Sbjct: 489 MILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCG- 546

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            M+ A   FN  + K+  SW  L+TGYA  G G   + +F +M+   V  +  +F+  + 
Sbjct: 547 RMEPAWNQFNSCE-KDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLC 605

Query: 223 ACASTGWVSFGKLIHAAVIKHGF--GSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKD 279
           AC+ +G V+ G L +   ++H F    NL    S++D+  R   L DA ++  +M  + D
Sbjct: 606 ACSRSGMVTDG-LEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPD 664

Query: 280 LITWNTII 287
              W  ++
Sbjct: 665 PAIWGALL 672


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/592 (34%), Positives = 324/592 (54%), Gaps = 58/592 (9%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P+  +    +LI      G ++EA  LF  MPE D  SW  M++G+   +   ++   F
Sbjct: 76  MPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYF 135

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
           V+M R +   N ++  S L AC G+  L+    VH +  K      +Y+ ++L+D+Y+ C
Sbjct: 136 VKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKC 195

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
             S+  A  VF+ M  +N V+W +LIT Y  +G     L VF  M+  G+E +  + +  
Sbjct: 196 G-SVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASV 254

Query: 221 VRACASTGWVSFGKLIHAAVIK-HGFGSNLPVMNSILDMYCRFDCLSDANQYFD------ 273
           V ACAS   +  G  IHA V+K + F  +L + N+++DMY +   +++A + FD      
Sbjct: 255 VSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRN 314

Query: 274 -------------------------EMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKS 307
                                    +MT++++++WN +IAGY ++G + E L +F  +K 
Sbjct: 315 VVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKR 374

Query: 308 ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISD 367
           E   P  +TF ++                        L  ++ + N+LIDMY KCG+I D
Sbjct: 375 ESIWPTHYTFGNL------------------------LKSDIFVGNSLIDMYMKCGSIED 410

Query: 368 SQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH 427
             ++F +M +RD V+W ++++GY  +G+G EA+++F +M+  G +PD +  + VL ACSH
Sbjct: 411 GSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSH 470

Query: 428 AGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGP 487
           AGLV+EG  YF SM ++ + P K+ Y C+VDLLGRAG + EA  LI++MP  PD  VWG 
Sbjct: 471 AGLVEEGRHYFFSMEEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGS 530

Query: 488 LLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547
           LL ACK H    +GK AA ++L++ P   G Y++LSN+YA  G+W +  + RK+MR  G 
Sbjct: 531 LLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGV 590

Query: 548 KKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDID 599
            K+ G SWIEV  +V  F+  DK   H + +Y VL+ML   M    Y PD +
Sbjct: 591 TKQPGCSWIEVESRVHVFLVKDKSHPHRKQIYSVLKMLTEQMKRVGYIPDAN 642



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 115/418 (27%), Positives = 210/418 (50%), Gaps = 49/418 (11%)

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           +VR+   PN+   + +L +C   +S     LVH   +       I+++N L+DVY   C 
Sbjct: 6   LVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGK-CD 64

Query: 163 SMDNARLVFNDMKWKNDVSWTTLI-------------------------------TGYAH 191
            +D+AR +F+ M  +N  +W +LI                               +G+A 
Sbjct: 65  CLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQ 124

Query: 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251
                  L  F +M  E   +N YSF  A+ ACA    ++ G  +HA V K  + +++ +
Sbjct: 125 HDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYM 184

Query: 252 MNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERF 310
            ++++DMY +   ++ A + F  M E++L+TWN++I  YE++G +SE L +F +M     
Sbjct: 185 GSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGL 244

Query: 311 SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG-LDGNLALANALIDMYAKCGNISDSQ 369
            P+  T  S+++ACA+L AL  G Q+HA +V+      +L L NAL+DMYAKC  +++++
Sbjct: 245 EPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEAR 304

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
           ++F  MS R++V+ TSM+ GY      K A  +F +M +  V    + + A++   +  G
Sbjct: 305 RVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNV----VSWNALIAGYTQNG 360

Query: 430 LVDEGLKYFKSMNDYNVNPNKEIYG-----------CVVDLLGRAGRVKEAYELIKSM 476
             +E L+ F+ +   ++ P    +G            ++D+  + G +++   + + M
Sbjct: 361 ENEEALRLFRLLKRESIWPTHYTFGNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKM 418



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 153/300 (51%), Gaps = 33/300 (11%)

Query: 213 NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYF 272
           N   F+  + +C  +      +L+HA ++   F   + + N ++D+Y + DCL DA + F
Sbjct: 14  NSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLF 73

Query: 273 DEMTEKDLITWNTIIAGYEKSG--------------------------------SSECLN 300
           D M +++  TWN++I+   KSG                                  E L 
Sbjct: 74  DRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLE 133

Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360
            F KM  E F  N ++F S ++ACA L  L+ G QVHA + +     ++ + +ALIDMY+
Sbjct: 134 YFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYS 193

Query: 361 KCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420
           KCG+++ ++++FS M +R+LVTW S++  Y  +G   EA+E+F  M+ SG+ PD +   +
Sbjct: 194 KCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLAS 253

Query: 421 VLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG-CVVDLLGRAGRVKEAYELIKSMPFK 479
           V++AC+    + EGL+    +   N   +  + G  +VD+  +  +V EA  +   M  +
Sbjct: 254 VVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIR 313


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/566 (35%), Positives = 326/566 (57%), Gaps = 9/566 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            +  +++  Y    ++ +A+ +FD M  R+ VSW  MIAG+ +     +A+ +F  M   
Sbjct: 229 FVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLE 288

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V       ++V+K C  +K +S A  +H   IK G +  + ++ +LM  Y+ C   +D+
Sbjct: 289 GVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCS-EIDD 347

Query: 167 ARLVFNDMKW-KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           A  +F  M   +N VSWT +I+GY  +G     + +F +M  EGV  N +++S  + A A
Sbjct: 348 AFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANA 407

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           +         IHA V+K  + ++  V  ++ D Y +    ++A + F+ + EKD++ W+ 
Sbjct: 408 AVS----PSQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSA 463

Query: 286 IIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACAT-LAALSCGQQVHAGIVRR 343
           +++GY + G  E  + +F ++  E   PN FTF+S++ ACA   A++  G+Q H+  ++ 
Sbjct: 464 MLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKS 523

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G    L +++AL+ MYAK GNI  + ++F    DRDLV+W SM+ GY  HG GK+++++F
Sbjct: 524 GFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIF 583

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGR 462
           +EM    +  D I F+ V++AC+HAGLV+EG +YF  M  DY++ P  E Y C+VDL  R
Sbjct: 584 EEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSR 643

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AG +++A +LI  MPF    ++W  LL AC+ H    LG+LAA +++ L+P     Y++L
Sbjct: 644 AGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLL 703

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           SNIYA  G W+E AK RK+M     KKE G SWIEV++K   F+A D     +  +Y  L
Sbjct: 704 SNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKL 763

Query: 583 EMLIRHMNETAYEPDIDCLIHDLEGE 608
           E L   + +  Y PD   ++HD+E E
Sbjct: 764 EELSIRLKDAGYYPDTKYVLHDVEEE 789



 Score =  238 bits (608), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 134/451 (29%), Positives = 247/451 (54%), Gaps = 9/451 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + T+L+  Y     +E+   +FDEM  ++VVSWT ++AGY     + QA  +F +M    
Sbjct: 129 VGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEG 188

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + PN FT ++VL       ++     VH M IK GL+ +I+V NS++++Y+   +  D A
Sbjct: 189 IKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSD-A 247

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           + VF+ M+ +N VSW ++I G+  +G       +F  M LEGV++    F+  ++ CA+ 
Sbjct: 248 KAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANI 307

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE-KDLITWNTI 286
             +SF K +H  VIK+G   +L +  +++  Y +   + DA + F  M   +++++W  I
Sbjct: 308 KEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAI 367

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+GY ++G ++  +N+F +M+ E   PN FT+++I+ A A ++      Q+HA +V+   
Sbjct: 368 ISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSP----SQIHALVVKTNY 423

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           + + ++  AL D Y+K G+ +++ KIF  + ++D+V W++M+ GY   G  + A+++F +
Sbjct: 424 ENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQ 483

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE-IYGCVVDLLGRAG 464
           + K GV P+   F +VL AC+      E  K F S +  +   N   +   +V +  + G
Sbjct: 484 LAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRG 543

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            ++ A E+ K      D   W  ++    +H
Sbjct: 544 NIESANEVFKRQ-VDRDLVSWNSMISGYAQH 573



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 126/427 (29%), Positives = 227/427 (53%), Gaps = 8/427 (1%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           ++ LFDE P++ +     ++  ++  + + +A  +F+ + R+    +  +LS VLK C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTT 184
           +        VH   IK G    + V  SL+D+Y     S+++   VF++M+ KN VSWT+
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKT-ESVEDGERVFDEMRVKNVVSWTS 163

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG 244
           L+ GY  +G     L +F +M LEG++ NP++F+  +   A+ G V  G  +H  VIK G
Sbjct: 164 LLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSG 223

Query: 245 FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFS 303
             S + V NS+++MY +   +SDA   FD M  ++ ++WN++IAG+  +G   E   +F 
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFY 283

Query: 304 KMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG 363
           +M+ E        F ++I  CA +  +S  +Q+H  +++ G D +L +  AL+  Y+KC 
Sbjct: 284 RMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCS 343

Query: 364 NISDSQKIFSEMSD-RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
            I D+ K+F  M   +++V+WT+++ GY  +G    A+ LF +M + GVRP+   +  +L
Sbjct: 344 EIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTIL 403

Query: 423 TACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDE 482
           TA  +A +    +       +Y  +P+  +   + D   + G   EA ++ + +  K D 
Sbjct: 404 TA--NAAVSPSQIHALVVKTNYENSPS--VGTALSDSYSKIGDANEAAKIFELIDEK-DI 458

Query: 483 SVWGPLL 489
             W  +L
Sbjct: 459 VAWSAML 465


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/560 (35%), Positives = 321/560 (57%), Gaps = 4/560 (0%)

Query: 52   LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
            LI  Y   G +  AR++F +M E D++SW  MI+G T       +  +FV ++R+ + P+
Sbjct: 976  LINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPD 1035

Query: 112  AFTLSSVLKACKGMKS-LSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
             FT++SVL+AC  ++     A  +H  A+K G+    +V  +L+DVY+     M+ A  +
Sbjct: 1036 QFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRG-KMEEAEFL 1094

Query: 171  FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
            F +    +  SW  ++ GY  SG+    L ++  M   G   +  +   A +A      +
Sbjct: 1095 FVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGL 1154

Query: 231  SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
              GK IHA V+K GF  +L V + +LDMY +   +  A + F E+   D + W T+I+G 
Sbjct: 1155 KQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGC 1214

Query: 291  EKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
             ++G  E  L  + +M+  +  P+ +TF +++ AC+ L AL  G+Q+HA IV+     + 
Sbjct: 1215 VENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDP 1274

Query: 350  ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
             +  +L+DMYAKCGNI D++ +F   + R + +W +M++G   HG+ KEA++ F  M   
Sbjct: 1275 FVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSR 1334

Query: 410  GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKE 468
            GV PDR+ F+ VL+ACSH+GLV E  + F SM  +Y + P  E Y C+VD L RAGR++E
Sbjct: 1335 GVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEE 1394

Query: 469  AYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA 528
            A ++I SMPF+   S++  LL AC+       GK  A ++L L+P+    Y++LSN+YAA
Sbjct: 1395 AEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAA 1454

Query: 529  EGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRH 588
              +WE  A  R +MR +  KK+ G SW+++++KV  F+A D+    T  +Y  +E +++ 
Sbjct: 1455 ANQWENVASARNMMRKVNVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKR 1514

Query: 589  MNETAYEPDIDCLIHDLEGE 608
            + E  Y PD D  + D+E E
Sbjct: 1515 IREEGYVPDTDFALVDVEEE 1534



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 135/490 (27%), Positives = 224/490 (45%), Gaps = 43/490 (8%)

Query: 16   HKIPPIIKQSLQSVKKSSIQSDPPLIPK----GPSILATNLIKSYFDEGLIEEARTLFDE 71
            H + P+ K  L S   S+ +S      K        +A  L+  Y   GLI EAR LFD 
Sbjct: 761  HTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDG 820

Query: 72   MPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNA 131
            M  RDVV W VM+  Y       +A  +F E  R    P+  TL ++ +  K  K++   
Sbjct: 821  MAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKNI--- 877

Query: 132  ALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAH 191
                             +E      YAT        +L   D    + + W   ++ +  
Sbjct: 878  -----------------LELKQFKAYAT--------KLFMYDDDGSDVIVWNKALSRFLQ 912

Query: 192  SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251
             G  +  +  F +M+   V  +  +F + +   A    +  GK IH  V++ G    + V
Sbjct: 913  RGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSV 972

Query: 252  MNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSEC-LNMFSKMKSERF 310
             N +++MY +   +S A   F +M E DLI+WNT+I+G   SG  EC + MF  +  +  
Sbjct: 973  GNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSL 1032

Query: 311  SPNCFTFTSIIAACATL-AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
             P+ FT  S++ AC++L        Q+HA  ++ G+  +  ++ ALID+Y+K G + +++
Sbjct: 1033 LPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAE 1092

Query: 370  KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
             +F      DL +W ++M GY   G   +A+ L+  M +SG R D+I    V  A +  G
Sbjct: 1093 FLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITL--VNAAKAAGG 1150

Query: 430  LVDEGLKYFKSMNDYNV----NPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVW 485
            LV  GLK  K ++   V    N +  +   V+D+  + G ++ A  +   +P  PD+  W
Sbjct: 1151 LV--GLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIP-SPDDVAW 1207

Query: 486  GPLLGACKEH 495
              ++  C E+
Sbjct: 1208 TTMISGCVEN 1217



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 98/384 (25%), Positives = 190/384 (49%), Gaps = 32/384 (8%)

Query: 47   ILATNLIKSYFDEGLIEEARTLFDEMPE--RDVVSWTVMIAGYTSF-NCHNQAWTVFVEM 103
             +  NLI  Y   G +  AR LFD  P+  RD+V+W  +++   +  +  +  + +F  +
Sbjct: 692  FVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHADKSHDGFHLFRLL 751

Query: 104  VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
             R+ V+    TL+ V K C    S S +  +HG A+K GL+  ++V  +L+++YA   + 
Sbjct: 752  RRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGL- 810

Query: 164  MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
            +  AR++F+ M  ++ V W  ++  Y  +   Y  + +F E    G   +  +     R 
Sbjct: 811  IREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTLSR- 869

Query: 224  CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
                            V+K           +IL++  +F   +     +D+    D+I W
Sbjct: 870  ----------------VVK--------CKKNILELK-QFKAYATKLFMYDD-DGSDVIVW 903

Query: 284  NTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
            N  ++ + + G + E ++ F  M + R + +  TF  ++   A L  L  G+Q+H  ++R
Sbjct: 904  NKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMR 963

Query: 343  RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
             GLD  +++ N LI+MY K G++S ++ +F +M++ DL++W +M+ G    G  + ++ +
Sbjct: 964  SGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGM 1023

Query: 403  FDEMVKSGVRPDRIVFMAVLTACS 426
            F  +++  + PD+    +VL ACS
Sbjct: 1024 FVHLLRDSLLPDQFTVASVLRACS 1047



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 107/209 (51%), Gaps = 5/209 (2%)

Query: 214 PYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFD 273
           P  FSI  +A A++  +S GK  HA ++  G   +  V N+++ MY +   LS A + FD
Sbjct: 657 PQCFSILRQAIAASD-LSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFD 715

Query: 274 EM--TEKDLITWNTIIAGYEKSG--SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAA 329
               T +DL+TWN I++        S +  ++F  ++    S    T   +   C   A+
Sbjct: 716 TTPDTNRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSAS 775

Query: 330 LSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIG 389
            S  + +H   V+ GL  ++ +A AL+++YAK G I +++ +F  M+ RD+V W  MM  
Sbjct: 776 PSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKA 835

Query: 390 YGAHGHGKEAIELFDEMVKSGVRPDRIVF 418
           Y       EA+ LF E  ++G RPD +  
Sbjct: 836 YVDTCLEYEAMLLFSEFHRTGFRPDDVTL 864



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 93/185 (50%), Gaps = 1/185 (0%)

Query: 47   ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
             + + ++  Y   G +E AR +F E+P  D V+WT MI+G         A   + +M  +
Sbjct: 1174 FVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLS 1233

Query: 107  EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            +V P+ +T ++++KAC  + +L     +H   +K       +V  SL+D+YA C  ++++
Sbjct: 1234 KVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCG-NIED 1292

Query: 167  ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
            AR +F     +   SW  +I G A  GN    L  FK M   GV  +  +F   + AC+ 
Sbjct: 1293 ARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSH 1352

Query: 227  TGWVS 231
            +G VS
Sbjct: 1353 SGLVS 1357



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 87/429 (20%), Positives = 175/429 (40%), Gaps = 38/429 (8%)

Query: 110  PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
            P  F   S+L+       LS     H   +  G     +V N+L+ +YA C  S+ +AR 
Sbjct: 657  PQCF---SILRQAIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCG-SLSSARK 712

Query: 170  VFNDMKWKND--VSWTTLITGYA-HSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
            +F+     N   V+W  +++  A H+   + G  +F+ +    V    ++ +   + C  
Sbjct: 713  LFDTTPDTNRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLL 772

Query: 227  TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            +   S  + +H   +K G   ++ V  +++++Y +F  + +A   FD M  +D++ WN +
Sbjct: 773  SASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVM 832

Query: 287  IAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
            +  Y +     E + +FS+     F P+  T  ++         + C + +        L
Sbjct: 833  MKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTLS------RVVKCKKNILE------L 880

Query: 346  DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
                A A  L  MY   G+              D++ W   +  +   G   EA++ F +
Sbjct: 881  KQFKAYATKLF-MYDDDGS--------------DVIVWNKALSRFLQRGEAWEAVDCFVD 925

Query: 406  MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
            M+ S V  D + F+ +LT  +    ++ G +    +    ++    +  C++++  +AG 
Sbjct: 926  MINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGS 985

Query: 466  VKEAYELIKSMPFKPDESVWGPLLGACKEHRLP--NLGKLAALRVLDLKPNMMGTYIILS 523
            V  A  +   M  + D   W  ++  C    L   ++G    L    L P+      +L 
Sbjct: 986  VSRARSVFGQMN-EVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLR 1044

Query: 524  NIYAAEGKW 532
               + EG +
Sbjct: 1045 ACSSLEGGY 1053



 Score = 45.8 bits (107), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 3/141 (2%)

Query: 50   TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
            T+L+  Y   G IE+AR LF     R + SW  MI G        +A   F  M    V 
Sbjct: 1278 TSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVM 1337

Query: 110  PNAFTLSSVLKACKGMKSLSNA-ALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
            P+  T   VL AC     +S A    + M    G+E  I   + L+D  +     ++ A 
Sbjct: 1338 PDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAG-RIEEAE 1396

Query: 169  LVFNDMKWKNDVS-WTTLITG 188
             V + M ++   S + TL+  
Sbjct: 1397 KVISSMPFEASASMYRTLLNA 1417


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/565 (35%), Positives = 324/565 (57%), Gaps = 13/565 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + + LI      G +  AR +FD + E+ VV WT++I+ Y    C  +A  +F++ + + 
Sbjct: 190 VGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLEDG 249

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI--SMD 165
             P+ +T+SS++ AC  + S+     +H +A++ G      V   L+D+YA   I  +MD
Sbjct: 250 FEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQAMD 309

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGV-FKEMLLEGVEMNPYSFSIAVRAC 224
            A  VF  M+  + +SWT LI+GY  SG     + V F EML E ++ N  ++S  ++AC
Sbjct: 310 YANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSILKAC 369

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           A+      G+ +HA VIK    +   V N+++ MY    C+ +A + F+++ E+ +I+  
Sbjct: 370 ANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYERSMIS-- 427

Query: 285 TIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
            I  G +         M   + S        TF S+I+A A++  L+ GQQ+HA  ++ G
Sbjct: 428 CITEGRDAPLDHRIGRMDMGISSS-------TFASLISAAASVGMLTKGQQLHAMTLKAG 480

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
              +  ++N+L+ MY++CG + D+ + F+E+ DR++++WTSM+ G   HG+ + A+ LF 
Sbjct: 481 FGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFH 540

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRA 463
           +M+ +GV+P+ + ++AVL+ACSH GLV EG +YF+SM  D+ + P  E Y C+VDLL R+
Sbjct: 541 DMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARS 600

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G VKEA E I  MP K D  VW  LLGAC+ H    +G++AA  V++L+P     Y++LS
Sbjct: 601 GLVKEALEFINEMPLKADALVWKTLLGACRSHDNIEVGEIAAKNVIELEPRDPAPYVLLS 660

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           N+YA  G W+E A+ R  MR     KE G+SW+EV +    F A D      Q +YG L+
Sbjct: 661 NLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLD 720

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGE 608
            L+  +    Y PD   ++HD+  E
Sbjct: 721 TLVGEIKGMGYVPDTSIVLHDMSDE 745



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 119/230 (51%), Gaps = 7/230 (3%)

Query: 213 NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGF-GSNLPVMNSILDMYCRFDCLSDANQY 271
           +P   S  + A A  G +  G+ +H  +++      +  V NS+L +Y R   ++ A   
Sbjct: 47  HPSDVSALLAAAARAGDLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNV 106

Query: 272 FDEMTE-KDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAA 329
           FD M   +D+++W  + +   ++G+  E L +  +M      PN +T  ++  AC     
Sbjct: 107 FDGMRGLRDIVSWTAMASCLARNGAERESLLLIGEMLESGLLPNAYTLCAVAHACFP-HE 165

Query: 330 LSCGQQVHAGIV--RRGLDG-NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSM 386
           L C        +  + GL G ++A+ +ALIDM A+ G+++ ++K+F  + ++ +V WT +
Sbjct: 166 LYCLVGGVVLGLVHKMGLWGTDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLL 225

Query: 387 MIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
           +  Y      +EA+E+F + ++ G  PDR    ++++AC+  G V  GL+
Sbjct: 226 ISRYVQGECAEEAVEIFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQ 275


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/600 (33%), Positives = 340/600 (56%), Gaps = 36/600 (6%)

Query: 41  IPKGPSILA-TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTV 99
           IP+ P++ +  NL+ +Y   G + E    F+++P+RD V+W V+I GY+       A   
Sbjct: 64  IPQ-PNLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKA 122

Query: 100 FVEMVRN-EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA 158
           +  M+++   N    TL ++LK       +S    +HG  IK G E  + V + L+D+Y+
Sbjct: 123 YNTMMKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYS 182

Query: 159 TC-CIS-----------------------------MDNARLVFNDMKWKNDVSWTTLITG 188
              CIS                             +++A  +F  M+ K+ VSW+ +I G
Sbjct: 183 KVGCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGME-KDSVSWSAMIKG 241

Query: 189 YAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSN 248
            A +G     +  F+EM +EG++M+ Y F   + AC   G ++ G+ IHA +I+     +
Sbjct: 242 LAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDH 301

Query: 249 LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKS 307
           + V ++++DMYC+  CL  A   FD M +K++++W  ++ GY ++G + E + +F  M+ 
Sbjct: 302 IYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQR 361

Query: 308 ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISD 367
               P+ +T    I+ACA +++L  G Q H   +  GL   + ++N+L+ +Y KCG+I D
Sbjct: 362 SGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDD 421

Query: 368 SQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH 427
           S ++F+EM+ RD V+WT+M+  Y   G   EAI+LFD+MV+ G++PD +    V++ACS 
Sbjct: 422 STRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSR 481

Query: 428 AGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWG 486
           AGLV++G +YF+ M N+Y + P+   Y C++DL  R+GR++EA   I  MPF+PD   W 
Sbjct: 482 AGLVEKGQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWT 541

Query: 487 PLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546
            LL AC+      +GK AA  +++L P+    Y +LS+IYA++GKW+  A+ R+ M+   
Sbjct: 542 TLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDCVAQLRRGMKEKN 601

Query: 547 SKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
            +KE G SWI+ + K+  F A+D+   ++  +Y  LE L + + +  Y+PD   + HD+E
Sbjct: 602 VRKEPGQSWIKWKGKLHSFSADDESSPYSDQIYAKLEELYQKIIDNGYKPDTSFVHHDVE 661



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 122/439 (27%), Positives = 211/439 (48%), Gaps = 65/439 (14%)

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMK 175
           S+ +K C G+ +  +  ++HG  I+       ++ N+++  YA    S+  AR VF+ + 
Sbjct: 7   SAQIKQCIGLGASRHVKMIHGNIIRTLPHPETFLHNNIVHAYALIRSSI-YARRVFDGIP 65

Query: 176 WKNDVSWTTLITGYAHSGN------GYGGL----GVFKEMLLEGVE-------------- 211
             N  SW  L+  Y+ SG+       +  L    GV   +L+EG                
Sbjct: 66  QPNLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNT 125

Query: 212 -MNPYSFSIA-------VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFD 263
            M  +S ++        ++  +S G VS GK IH  VIK GF S L V + +LDMY +  
Sbjct: 126 MMKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVG 185

Query: 264 CLSDANQYF----DEMT--------------------------EKDLITWNTIIAGYEKS 293
           C+SDA + F    D  T                          EKD ++W+ +I G  ++
Sbjct: 186 CISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQN 245

Query: 294 G-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
           G   E +  F +MK E    + + F S++ AC  L A++ G+Q+HA I+R  L  ++ + 
Sbjct: 246 GMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVG 305

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
           +ALIDMY KC  +  ++ +F  M  +++V+WT+M++GYG  G   EA+++F +M +SG+ 
Sbjct: 306 SALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGID 365

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
           PD       ++AC++   ++EG ++        +     +   +V L G+ G + ++  L
Sbjct: 366 PDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRL 425

Query: 473 IKSMPFKPDESVWGPLLGA 491
              M  + DE  W  ++ A
Sbjct: 426 FNEMNVR-DEVSWTAMVSA 443



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 80/179 (44%), Gaps = 12/179 (6%)

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           +++ I  C  L A    + +H  I+R        L N ++  YA   +   ++++F  + 
Sbjct: 6   YSAQIKQCIGLGASRHVKMIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIP 65

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR--IVFMAVLTACSHAGLVDEG 434
             +L +W ++++ Y   GH  E    F+++      PDR  + +  ++   S +GLV   
Sbjct: 66  QPNLFSWNNLLLAYSKSGHLSEMERTFEKL------PDRDGVTWNVLIEGYSLSGLVGAA 119

Query: 435 LKYFKS-MNDYNVNPNKEIYGCVVDLLGRAGRV---KEAYELIKSMPFKPDESVWGPLL 489
           +K + + M D++ N  +     ++ L    G V   K+ +  +  + F+    V  PLL
Sbjct: 120 VKAYNTMMKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLL 178


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 220/619 (35%), Positives = 333/619 (53%), Gaps = 58/619 (9%)

Query: 46  SILATNLIKSYFDE-GLIEEARTLFDEMPER---DVVSWTVMIAGYTSFNCHNQAWTVFV 101
           ++   N + S + + G +  A  +FD++  R   D+VSW  +++ Y   +  N A  +F 
Sbjct: 293 NVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFH 352

Query: 102 EMV-RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
           +M  R+ ++P+  +L ++L AC  + +      VHG +I+ GL   ++V N+++D+YA C
Sbjct: 353 KMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKC 412

Query: 161 CISMDNARLVFNDMKWKNDVSW-----------------------------------TTL 185
              M+ A  VF  MK+K+ VSW                                   T +
Sbjct: 413 G-KMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAV 471

Query: 186 ITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGF 245
           ITGYA  G G   L VF++M   G   N  +    + AC S G +  GK  H   IK   
Sbjct: 472 ITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFIL 531

Query: 246 --------GSNLPVMNSILDMYCRFDCLSDANQYFDEMT--EKDLITWNTIIAGYEKSG- 294
                     +L V+N ++DMY +      A + FD ++  ++D++TW  +I GY + G 
Sbjct: 532 NLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGD 591

Query: 295 SSECLNMFSKM--KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLAL- 351
           ++  L +FS M    +   PN FT +  + ACA LAAL  G+QVHA ++R    G++ L 
Sbjct: 592 ANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLR-NFYGSVMLF 650

Query: 352 -ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
            AN LIDMY+K G++  +Q +F  M  R+ V+WTS+M GYG HG G++A+ +FDEM K  
Sbjct: 651 VANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVP 710

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEA 469
           + PD I F+ VL ACSH+G+VD G+ +F  M+ D+ V+P  E Y C+VDL GRAGR+ EA
Sbjct: 711 LVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEA 770

Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529
            +LI  MP +P   VW  LL AC+ H    LG+ AA R+L+L+    G+Y +LSNIYA  
Sbjct: 771 MKLINEMPMEPTPVVWVALLSACRLHSNVELGEFAANRLLELESGNDGSYTLLSNIYANA 830

Query: 530 GKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHM 589
            +W++ A+ R  M+  G KK  G SWI+ R  V  F   D+    +Q +Y  L  LI+ +
Sbjct: 831 RRWKDVARIRYTMKRTGIKKRPGCSWIQGRKGVATFYVGDRSHPQSQQIYETLADLIQRI 890

Query: 590 NETAYEPDIDCLIHDLEGE 608
               Y P     +HD++ E
Sbjct: 891 KAIGYVPQTSFALHDVDDE 909



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 149/569 (26%), Positives = 258/569 (45%), Gaps = 83/569 (14%)

Query: 5   RLLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEE 64
           RLLS      C  IP    +   S+  + +     ++      LATNLI +Y        
Sbjct: 156 RLLS------CATIPITALKECNSLAHAKLLHQQSIMQGLLFHLATNLIGTYIASNSTAY 209

Query: 65  ARTLFDEMPER--DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKAC 122
           A  L + +P     V  W  +I            +T++ +M      P+ +T   V KAC
Sbjct: 210 AILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKAC 269

Query: 123 KGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM---KWKND 179
             + SLS  A +H    + G   +++V N+++ +Y  C  ++ +A  +F+D+     ++ 
Sbjct: 270 ANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCG-ALRHAHNMFDDLCHRGIQDL 328

Query: 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA--VRACASTGWVSFGKLIH 237
           VSW ++++ Y  + +    L +F +M    + M+P   S+   + ACAS      G+ +H
Sbjct: 329 VSWNSVVSAYMWASDANTALALFHKMTTRHL-MSPDVISLVNILPACASLAASLRGRQVH 387

Query: 238 AAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE 297
              I+ G   ++ V N+++DMY +   + +AN+ F  M  KD+++WN ++ GY ++G  E
Sbjct: 388 GFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLE 447

Query: 298 -CLNMFSKMKSERFS-----------------------------------PNCFTFTSII 321
             L++F +M  E                                      PN  T  S++
Sbjct: 448 HALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLL 507

Query: 322 AACATLAALSCGQQVHAGIVR--RGLDG------NLALANALIDMYAKCGNISDSQKIFS 373
           +AC ++ AL  G++ H   ++    LDG      +L + N LIDMYAKC +   ++K+F 
Sbjct: 508 SACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFD 567

Query: 374 EMS--DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK--SGVRPDRIVFMAVLTACSHAG 429
            +S  DRD+VTWT M+ GY  HG    A++LF  M K    ++P+       L AC+   
Sbjct: 568 SVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLA 627

Query: 430 LVDEGLKYFKSMNDYNVNPNKEIYG--------CVVDLLGRAGRVKEAYELIKSMPFKPD 481
                L++ + ++ Y +   +  YG        C++D+  ++G V  A  +  +MP +  
Sbjct: 628 ----ALRFGRQVHAYVL---RNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNA 680

Query: 482 ESVWGPLLGACKEHRLPNLGKLAALRVLD 510
            S W  L+     H     G+  ALRV D
Sbjct: 681 VS-WTSLMTGYGMH---GRGE-DALRVFD 704


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/558 (36%), Positives = 316/558 (56%), Gaps = 5/558 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y   G I  AR +FD MP RD +SW  MI+GY   +   +   +F  M    V+P+
Sbjct: 236 LITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPD 295

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
             T++SV+ AC+ +        VHG  IK G    + V NSL+ ++++     D A +VF
Sbjct: 296 LMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVG-CWDEAEMVF 354

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           + M++K+ VSWT +I+GY  +G     +  +  M  EGV  +  + +  + ACA  G + 
Sbjct: 355 SKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLD 414

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            G ++H    + G  S + V NS++DMY +  C+  A + F  +  K++I+W +II G  
Sbjct: 415 KGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLR 474

Query: 292 KSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
            +  S E L  F +M      PN  T  S+++ACA + ALSCG+++HA  +R GL  +  
Sbjct: 475 LNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGF 533

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           L NAL+DMY +CG +  +   F+   ++D+ +W  ++ GY   G G  A+ELF +M++S 
Sbjct: 534 LPNALLDMYVRCGRMEPAWNQFNS-CEKDVASWNILLTGYAQQGKGGLAVELFHKMIESD 592

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
           V PD I F ++L ACS +G+V +GL+YF+SM + +++ PN + Y  VVDLLGRAGR+++A
Sbjct: 593 VNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDA 652

Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529
           YE IK MP  PD ++WG LL AC+ ++   LG+LAA  + ++    +G YI+L N+YA  
Sbjct: 653 YEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADS 712

Query: 530 GKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHM 589
           GKW+E A+ RKIMR      + G SW+EV  +V  F+  D      + +  VLE     M
Sbjct: 713 GKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEKM 772

Query: 590 NETAYEPDIDCLIHDLEG 607
             T      D    D++ 
Sbjct: 773 EATGLSMSKDSRRDDIDA 790



 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 131/443 (29%), Positives = 236/443 (53%), Gaps = 5/443 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L   L+  +   G + EA  +F +M ERD+ SW V++ GY      ++A  ++  M+   
Sbjct: 131 LGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVG 190

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + P+ +T   VL+ C G+  L+    VH   I+ G E  + V N+L+ +Y  C   + +A
Sbjct: 191 IRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCG-DIFSA 249

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           RLVF+ M  ++ +SW  +I+GY  +     GL +F  M    V+ +  + +  + AC + 
Sbjct: 250 RLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEAL 309

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
           G    G+ +H  VIK GF + + V NS++ M+    C  +A   F +M  KDL++W  +I
Sbjct: 310 GDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMI 369

Query: 288 AGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           +GYEK+G  E  +  ++ M+ E   P+  T  S+++ACA L  L  G  +H    R GL 
Sbjct: 370 SGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLT 429

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
             + +AN+LIDMY+KC  I  + ++F  + ++++++WTS+++G   +    EA+  F +M
Sbjct: 430 SYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQM 489

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
           + S ++P+ +  ++VL+AC+  G +  G +         +  +  +   ++D+  R GR+
Sbjct: 490 ILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRM 548

Query: 467 KEAYELIKSMPFKPDESVWGPLL 489
           + A+    S   + D + W  LL
Sbjct: 549 EPAWNQFNSC--EKDVASWNILL 569



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 214/418 (51%), Gaps = 2/418 (0%)

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           +V+    T  ++L+ C+  ++ S  + VH    K      + + N+L+ ++      +  
Sbjct: 89  QVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFG-DLVE 147

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  VF  M  ++  SW  L+ GYA +G     L ++  ML  G+  + Y+F   +R C  
Sbjct: 148 AWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGG 207

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              ++ G+ +H  VI++GF S++ V+N+++ MY +   +  A   FD M  +D I+WN +
Sbjct: 208 LPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAM 267

Query: 287 IAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+GY E     E L +F  M+     P+  T TS+I+AC  L     G++VH  +++ G 
Sbjct: 268 ISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGF 327

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
              +++ N+LI M++  G   +++ +FS+M  +DLV+WT+M+ GY  +G  ++A+E +  
Sbjct: 328 VAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTI 387

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M   GV PD I   +VL+AC+  GL+D+G+   +  +   +     +   ++D+  +   
Sbjct: 388 MEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRC 447

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           + +A E+   +P K   S    +LG    +R           +L LKPN +    +LS
Sbjct: 448 IDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILSLKPNSVTLVSVLS 505



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/341 (30%), Positives = 180/341 (52%), Gaps = 8/341 (2%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
           +LI+ +   G  +EA  +F +M  +D+VSWT MI+GY       +A   +  M    V P
Sbjct: 336 SLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVP 395

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNARL 169
           +  T++SVL AC G+  L    ++H  A + GL   + V NSL+D+Y+ C CI  D A  
Sbjct: 396 DEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCI--DKALE 453

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           VF+ +  KN +SWT++I G   +   +  L  F++M+L  ++ N  +    + ACA  G 
Sbjct: 454 VFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMIL-SLKPNSVTLVSVLSACARIGA 512

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           +S GK IHA  ++ G G +  + N++LDMY R   +  A   F+   EKD+ +WN ++ G
Sbjct: 513 LSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNS-CEKDVASWNILLTG 571

Query: 290 YEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-GLDG 347
           Y + G     + +F KM     +P+  TFTS++ AC+    ++ G +    +  +  +  
Sbjct: 572 YAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAP 631

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMM 387
           NL    +++D+  + G + D+ +   +M  D D   W +++
Sbjct: 632 NLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALL 672



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 131/248 (52%), Gaps = 15/248 (6%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAG----YTSFNCHNQAWTVFVE 102
           I+A +LI  Y     I++A  +F  +P ++V+SWT +I G    Y SF    +A   F +
Sbjct: 433 IVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSF----EALFFFQQ 488

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M+ + + PN+ TL SVL AC  + +LS    +H  A++ GL    ++ N+L+D+Y  C  
Sbjct: 489 MILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCG- 546

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            M+ A   FN  + K+  SW  L+TGYA  G G   + +F +M+   V  +  +F+  + 
Sbjct: 547 RMEPAWNQFNSCE-KDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLC 605

Query: 223 ACASTGWVSFGKLIHAAVIKHGF--GSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKD 279
           AC+ +G V+ G L +   ++H F    NL    S++D+  R   L DA ++  +M  + D
Sbjct: 606 ACSRSGMVTDG-LEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPD 664

Query: 280 LITWNTII 287
              W  ++
Sbjct: 665 PAIWGALL 672


>gi|449461407|ref|XP_004148433.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 749

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/561 (34%), Positives = 325/561 (57%), Gaps = 16/561 (2%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T L+  Y   G++E A  +FD +P R+V +WT ++ GY   +    A  +F++M+     
Sbjct: 97  TFLVNVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAY 156

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P+ +TL  VL AC  ++S+     VH   IK  ++    + NSL   Y+     ++ A  
Sbjct: 157 PSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKF-RRLEFAIK 215

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
            F  +K K+ +SWT++I+    +G     L  F +ML +G++ N Y+ +  + AC     
Sbjct: 216 AFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLT 275

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           +  G  IH+  IK G+GS++ + NSI+ +Y +   L +A + F+ M   +L+TWN +IAG
Sbjct: 276 LDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAG 335

Query: 290 Y-------------EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQV 336
           +              KSGS+  L MF K+      P+ FTF+S+++ C+ L AL  G+Q+
Sbjct: 336 HAKMMDLAEDDVAAHKSGST-ALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQI 394

Query: 337 HAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHG 396
           H  I++ G+  ++ +  AL+ MY KCG+I  + K F EM  R +++WTSM+ G+  HG  
Sbjct: 395 HGQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLS 454

Query: 397 KEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGC 455
           ++A++LF++M   G++P+++ F+ VL+ACSHAGL DE L YF+ M   YN+ P  + + C
Sbjct: 455 QQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFAC 514

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM 515
           ++D+  R GRV+EA++++  M F+P+E++W  L+  C+ H   +LG  AA ++L LKP  
Sbjct: 515 LIDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLLKLKPKD 574

Query: 516 MGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHT 575
           + TY+ L N++ + G+W++ +K RK+M+     K    SWI +++KV  F  NDK    +
Sbjct: 575 VETYVSLLNMHISAGRWKDVSKVRKLMKEEKVGKLKDWSWISIKEKVYSFKPNDKSHCQS 634

Query: 576 QYVYGVLEMLIRHMNETAYEP 596
             +Y +LE ++  +    YEP
Sbjct: 635 LEMYKLLETVLNEVKALGYEP 655



 Score =  205 bits (521), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 118/420 (28%), Positives = 222/420 (52%), Gaps = 16/420 (3%)

Query: 118 VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK 177
           +L+ C      + A ++HG  +K G    ++V   L++VY+ C + M++A  VF+++  +
Sbjct: 64  LLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGV-MESAHKVFDNLPRR 122

Query: 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIH 237
           N  +WTTL+TGY  + +    L +F +ML  G   + Y+  I + AC+S   + FGK +H
Sbjct: 123 NVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVH 182

Query: 238 AAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SS 296
           A +IK+    +  + NS+   Y +F  L  A + F  + EKD+I+W ++I+    +G ++
Sbjct: 183 AYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAA 242

Query: 297 ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALI 356
             L+ F  M S+   PN +T TS+++AC  +  L  G Q+H+  ++ G   ++ + N+++
Sbjct: 243 RSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIM 302

Query: 357 DMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY-----------GAHGHGKEAIELFDE 405
            +Y KCG + ++QK+F  M   +LVTW +M+ G+            AH  G  A+ +F +
Sbjct: 303 YLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQK 362

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           + +SG++PD   F +VL+ CS+   +++G +    +    V  +  +   +V +  + G 
Sbjct: 363 LYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGS 422

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNMMGTYIILS 523
           + +A +    MP +   S W  ++     H L    L     +R++ +KPN +    +LS
Sbjct: 423 IDKASKAFLEMPSRTMIS-WTSMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLS 481



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 136/270 (50%), Gaps = 19/270 (7%)

Query: 44  GPSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGY-----------TSFN 91
           G SIL  N ++  Y   G + EA+ LF+ M   ++V+W  MIAG+            +  
Sbjct: 292 GSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHK 351

Query: 92  CHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVEN 151
             + A  +F ++ R+ + P+ FT SSVL  C  + +L     +HG  IK G+   + V  
Sbjct: 352 SGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGT 411

Query: 152 SLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVE 211
           +L+ +Y  C  S+D A   F +M  +  +SWT++ITG+A  G     L +F++M L G++
Sbjct: 412 ALVSMYNKCG-SIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVGIK 470

Query: 212 MNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNS---ILDMYCRFDCLSDA 268
            N  +F   + AC+  G ++   L +  +++  +    PVM+    ++DMY R   + +A
Sbjct: 471 PNQVTFVGVLSACSHAG-LADEALYYFELMQKQYNIK-PVMDHFACLIDMYLRLGRVEEA 528

Query: 269 NQYFDEMT-EKDLITWNTIIAGYEKSGSSE 297
                +M  E +   W+ +IAG    G S+
Sbjct: 529 FDVVHKMNFEPNETIWSMLIAGCRSHGKSD 558



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 73/168 (43%), Gaps = 15/168 (8%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++ T L+  Y   G I++A   F EMP R ++SWT MI G+       QA  +F +M   
Sbjct: 408 VVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLV 467

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM-- 164
            + PN  T   VL AC      S+A L         L    Y    +MD +A C I M  
Sbjct: 468 GIKPNQVTFVGVLSAC------SHAGLADEALYYFELMQKQYNIKPVMDHFA-CLIDMYL 520

Query: 165 -----DNARLVFNDMKWK-NDVSWTTLITGYAHSGNGYGGLGVFKEML 206
                + A  V + M ++ N+  W+ LI G    G    G    +++L
Sbjct: 521 RLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLL 568


>gi|326522845|dbj|BAJ88468.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 776

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/570 (36%), Positives = 325/570 (57%), Gaps = 27/570 (4%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            +AT+L+  Y       +AR LFD MP+++VV+WT +I G+T  +    A  VFVEM+  
Sbjct: 112 FVATSLVNVYMRCASSRDARRLFDGMPDKNVVTWTALITGHTLNSEPALALEVFVEMLEL 171

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS--M 164
              P+ +TL  +L AC   + +     VHG +IK G +    + NSL  +Y   C S  +
Sbjct: 172 GRYPSHYTLGGMLSACSAARRIDLGQQVHGYSIKYGADTITSMGNSLCRLY---CKSGDL 228

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYG-GLGVFKEMLLEGVEMNPYSFSIAVRA 223
           ++    F     KN ++WTT+I+  A   N    GL +F +ML  GV  N ++ +  +  
Sbjct: 229 ESGLRAFKGTPDKNVITWTTMISSCAEDENYLDLGLSLFLDMLEGGVMPNEFTLTSVMSL 288

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C +   +S GK + A   K G  +NLPV NS + +Y R     +A + F+EM    +ITW
Sbjct: 289 CGARLDMSLGKQVQAFCYKVGCEANLPVKNSTMYLYLRKGETDEAMRLFEEMDSSSIITW 348

Query: 284 NTIIAGYE------------KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALS 331
           N +I+GY             +S   + L +F  +      P+ FTF+SI++ C+ + AL 
Sbjct: 349 NAMISGYAQIMDSAKDDLHARSRGFQALKLFRDLVRSELKPDLFTFSSILSVCSAMMALE 408

Query: 332 CGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG 391
            G+Q+HA  ++ G   ++ + +AL++MY KCG+I  + K F EM  R  VTWTSM+ GY 
Sbjct: 409 QGEQIHANTIKTGCLSDVVVNSALVNMYNKCGSIECATKAFVEMPTRTPVTWTSMISGYS 468

Query: 392 AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNK 450
            HG  ++AI+LF++MV SG RP+ I F+++L+ACS+AGLV+E  +YF  M N+Y++ P  
Sbjct: 469 QHGRSQDAIQLFEDMVLSGARPNEITFVSLLSACSYAGLVEEAERYFDMMRNEYHIEPLV 528

Query: 451 EIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD 510
           + YGC+VD+  R GR+ +A+  IK   F+P+E++W  L+  C+ H    L   AA R+L+
Sbjct: 529 DHYGCMVDMFVRLGRLDDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLLE 588

Query: 511 LKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGM----SWIEVRDKVCGFI 566
           LKP ++ TY++L N+Y + G+W + A+ RK+ +     ++VG+    SWI +RDKV  F 
Sbjct: 589 LKPKVIETYVLLLNMYISTGRWRDVARVRKLAK----HEDVGVLRDRSWIAIRDKVYFFR 644

Query: 567 ANDKMGSHTQYVYGVLEMLIRHMNETAYEP 596
           A+D        +Y +LE L+       YEP
Sbjct: 645 ADDMTHPQATELYQLLENLLEKAKAVGYEP 674



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 121/456 (26%), Positives = 222/456 (48%), Gaps = 18/456 (3%)

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M+R+     +     +L  C     L  A  +HG  +K G    ++V  SL++VY  C  
Sbjct: 67  MLRDGQTVQSAMYVPLLHRCVEAGGLGAARALHGHMVKTGTAADMFVATSLVNVYMRCAS 126

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
           S D AR +F+ M  KN V+WT LITG+  +      L VF EML  G   + Y+    + 
Sbjct: 127 SRD-ARRLFDGMPDKNVVTWTALITGHTLNSEPALALEVFVEMLELGRYPSHYTLGGMLS 185

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           AC++   +  G+ +H   IK+G  +   + NS+  +YC+   L    + F    +K++IT
Sbjct: 186 ACSAARRIDLGQQVHGYSIKYGADTITSMGNSLCRLYCKSGDLESGLRAFKGTPDKNVIT 245

Query: 283 WNTIIA--GYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           W T+I+    +++     L++F  M      PN FT TS+++ C     +S G+QV A  
Sbjct: 246 WTTMISSCAEDENYLDLGLSLFLDMLEGGVMPNEFTLTSVMSLCGARLDMSLGKQVQAFC 305

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG--------- 391
            + G + NL + N+ + +Y + G   ++ ++F EM    ++TW +M+ GY          
Sbjct: 306 YKVGCEANLPVKNSTMYLYLRKGETDEAMRLFEEMDSSSIITWNAMISGYAQIMDSAKDD 365

Query: 392 --AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN 449
             A   G +A++LF ++V+S ++PD   F ++L+ CS    +++G +   +        +
Sbjct: 366 LHARSRGFQALKLFRDLVRSELKPDLFTFSSILSVCSAMMALEQGEQIHANTIKTGCLSD 425

Query: 450 KEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH-RLPNLGKLAALRV 508
             +   +V++  + G ++ A +    MP +   + W  ++    +H R  +  +L    V
Sbjct: 426 VVVNSALVNMYNKCGSIECATKAFVEMPTRTPVT-WTSMISGYSQHGRSQDAIQLFEDMV 484

Query: 509 LD-LKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMR 543
           L   +PN + T++ L +  +  G  EE  ++  +MR
Sbjct: 485 LSGARPNEI-TFVSLLSACSYAGLVEEAERYFDMMR 519


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/564 (36%), Positives = 323/564 (57%), Gaps = 38/564 (6%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           LA  L+++Y  +G    AR +FD   E++VV + VMI  Y + N + +A ++F  M+   
Sbjct: 73  LAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCA 132

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDN 166
            NP+ +T   VLKAC G+ +L     VH   +K GL+ ++++ N+L+ +Y  C C+    
Sbjct: 133 FNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLR--E 190

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR V + M +++ VSW +++ GYA SG     L + KEM  + + +N  + ++A      
Sbjct: 191 ARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEM--DSLNLNHDAGTMA------ 242

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
                               S  PV+      Y   + +   +  F+ MT+K+LI+WN +
Sbjct: 243 --------------------SLSPVV-----CYTSLENVQYIHNMFERMTKKNLISWNVM 277

Query: 287 IAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           IA Y   S  +E +++F +M+     P+  T  S++ AC  L+AL  G+++H  I +  L
Sbjct: 278 IAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNL 337

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             NL L NAL+DMYAKCG + +++ +F +M  RD+V+WTSMM  YG  G G +A+ LF +
Sbjct: 338 QPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAK 397

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAG 464
           M+ SG  PD I F++VL+ACSH GL+D+G  YF+ M + Y + P  E + C+VDL GRAG
Sbjct: 398 MLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAG 457

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
            V+EAY  IK MP +P+E VWG LL AC+ H   ++G +AA  +  L P   G Y++LSN
Sbjct: 458 EVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSN 517

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           IYA  G W++    R  M+ +G KK  G+S +E+  +V  F+A D+     + +YG L++
Sbjct: 518 IYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDV 577

Query: 585 LIRHMNETAYEPDIDCLIHDLEGE 608
           L+  M E  Y P  +  +HD+E E
Sbjct: 578 LVGKMKELGYIPQTESALHDVEVE 601



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 4/86 (4%)

Query: 41  IPKG---PSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQA 96
           I KG   P++L  N L+  Y   G +EEAR +FD+M  RDVVSWT M++ Y        A
Sbjct: 332 IEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDA 391

Query: 97  WTVFVEMVRNEVNPNAFTLSSVLKAC 122
             +F +M+ +  NP++    SVL AC
Sbjct: 392 VALFAKMLDSGQNPDSIAFVSVLSAC 417


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/627 (33%), Positives = 342/627 (54%), Gaps = 71/627 (11%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y  +G  E +R L  EMP+ D VSWT +I GY  F   + A  +F +M+   V P+
Sbjct: 82  LISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPS 141

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
            FT+S+VL +C   ++L     +H   +K GL   + V  SL+++YA C   +  A++VF
Sbjct: 142 QFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVI-AKVVF 200

Query: 172 NDMKWKND-------------------------------VSWTTLITGYAHSGNGYGGLG 200
           + M  KN                                VSW ++I+GY+  G     L 
Sbjct: 201 DRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALV 260

Query: 201 VFKEMLLEGVEMNPYSFSIA--VRACASTGWVSFGKLIHAAVIK---------------- 242
           +F +ML E   + P +F++A  + ACA+   ++ GK IHA +++                
Sbjct: 261 IFSKMLNEP-SLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISM 319

Query: 243 ---------------HGFGSNLPVM--NSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
                          H   SNL ++   S+LD Y +   +  A + F+++ ++D++ W  
Sbjct: 320 YAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTA 379

Query: 286 IIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I GY ++G  ++ L +F  M +E   PN +T  ++++  ++L  L  G+Q+HA  ++ G
Sbjct: 380 MIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAG 439

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFS-EMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
                ++ NALI MYAK GNI+ ++++F      +++V+WTSM++    HG GKEAI LF
Sbjct: 440 ESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLF 499

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGR 462
           + M+  G++PD I ++ VL+AC+H GLV++G KY+  M + + + P    Y C++DL GR
Sbjct: 500 ERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGR 559

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AG ++EAY  I+SMP +PD   WG LL +CK H+  +L K+AA R+L + P   G Y+ L
Sbjct: 560 AGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLAL 619

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           +N+Y+A GKWE  A+ RK+M+  G +KE G+SWI ++++V  F   D +      +Y ++
Sbjct: 620 ANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLM 679

Query: 583 EMLIRHMNETAYEPDIDCLIHDLEGET 609
             +   + +  + PD + ++HDLE E 
Sbjct: 680 AEIWEEIKKMGFIPDTESVLHDLEEEV 706



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 130/461 (28%), Positives = 215/461 (46%), Gaps = 98/461 (21%)

Query: 134 VHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSG 193
           VH   IK+GL   +Y+ N+LM  YA    S+  A  VF++M  K+  SW TLI+GYA  G
Sbjct: 32  VHCQIIKKGLHLGVYLMNNLMTFYAKTG-SLRFAHHVFDEMPLKSTFSWNTLISGYAKQG 90

Query: 194 N------------------------GYGGLGVFK-------EMLLEGVEMNPYSFSIAVR 222
           N                        GY   G+F        +M+ E V  + ++ S  + 
Sbjct: 91  NFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLS 150

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR----------FDCLSDAN--- 269
           +CA+   +  G+ IH+ V+K G GS +PV  S+L+MY +          FD ++  N   
Sbjct: 151 SCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNIST 210

Query: 270 ------------------QYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSE-R 309
                               F++M ++D+++WN++I+GY + G + E L +FSKM +E  
Sbjct: 211 WNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPS 270

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC------- 362
             P+ FT  SI++ACA L  L+ G+Q+HA I+R   + + A+ NALI MYAK        
Sbjct: 271 LKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIAR 330

Query: 363 --------------------------GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHG 396
                                     GN+  +++IF+++ DRD+V WT+M++GY  +G  
Sbjct: 331 LIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLW 390

Query: 397 KEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCV 456
            +A+ELF  MV  G  P+     A+L+  S   +++ G +   S      +    +   +
Sbjct: 391 NDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNAL 450

Query: 457 VDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
           + +  + G +  A  +      K +   W  ++ A  +H L
Sbjct: 451 IAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGL 491



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 147/310 (47%), Gaps = 72/310 (23%)

Query: 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEK 292
           G+ +H  +IK G    + +MN+++  Y +   L  A+  FDEM  K   +WNT+I+GY K
Sbjct: 29  GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAK 88

Query: 293 SGSSE--------------------------------CLNMFSKMKSERFSPNCFTFTSI 320
            G+ E                                 + MF+KM SER  P+ FT +++
Sbjct: 89  QGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNV 148

Query: 321 IAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG---------------NI 365
           +++CA    L  G+++H+ +V+ GL   + +A +L++MYAKCG               NI
Sbjct: 149 LSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNI 208

Query: 366 SDSQKI----------------FSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV-K 408
           S    +                F +M DRD+V+W SM+ GY   G+  EA+ +F +M+ +
Sbjct: 209 STWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNE 268

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCV----VDLLGRAG 464
             ++PD     ++L+AC++     E L   K ++ Y +    E  G V    + +  ++G
Sbjct: 269 PSLKPDNFTLASILSACANL----EKLNIGKQIHAYILRAETETSGAVGNALISMYAKSG 324

Query: 465 RVKEAYELIK 474
            V+ A  +++
Sbjct: 325 GVEIARLIVE 334



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 100/390 (25%), Positives = 176/390 (45%), Gaps = 61/390 (15%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I  T+L+  Y   G ++ AR +F+++ +RDVV+WT MI GY      N A  +F  MV  
Sbjct: 344 IAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNE 403

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
              PN++TL+++L     +  L +   +H  AIK G   +  V N+L+ +YA    +++ 
Sbjct: 404 GPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTG-NINV 462

Query: 167 ARLVFNDMKWKND-VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           A+ VF+    K + VSWT++I   A  G G   + +F+ ML  G++ +  ++   + AC 
Sbjct: 463 AKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACT 522

Query: 226 STGWVSFGKLIHAAVIK-HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLITW 283
             G V  G+  +  + + H     L     ++D+Y R   L +A  + + M  E D I W
Sbjct: 523 HVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAW 582

Query: 284 NTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +++A  +   +++     +K+ +ER                              ++  
Sbjct: 583 GSLLASCKIHKNAD----LAKVAAERLL----------------------------LIDP 610

Query: 344 GLDGN-LALANALIDMYAKCGNISDSQKIFSEMSDRDL-----VTWTSMMIGYGAHGHGK 397
           G  G  LALAN    +Y+ CG   ++ +    M DR +     ++W  + I    H  G 
Sbjct: 611 GNSGAYLALAN----VYSACGKWENAAQTRKLMKDRGVRKEKGISW--IHIKNEVHAFGV 664

Query: 398 EAI-------------ELFDEMVKSGVRPD 414
           E +             E+++E+ K G  PD
Sbjct: 665 EDVIHPQKDEIYKLMAEIWEEIKKMGFIPD 694



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 31/151 (20%)

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLD----------------GNLALA-------- 352
           F  I+     +     G+ VH  I+++GL                 G+L  A        
Sbjct: 13  FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMP 72

Query: 353 -------NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
                  N LI  YAK GN   S+++  EM D D V+WT++++GY   G    AI +F +
Sbjct: 73  LKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAK 132

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
           M+   V P +     VL++C+    +D G K
Sbjct: 133 MISERVPPSQFTVSNVLSSCAANQTLDIGRK 163


>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/561 (35%), Positives = 323/561 (57%), Gaps = 3/561 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           SI+ T  +  Y     + +A  +F+ +P     S+  +I GY   +   +A  +F  + R
Sbjct: 274 SIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALDIFQSLQR 333

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           N +  +  +LS  L AC  +K       +HG+A+K GL  +I V N+++D+Y  C   M+
Sbjct: 334 NNLGFDEISLSGALTACSVIKRHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALME 393

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A L+F +M+ ++ VSW  +I  +  +      L +F  ML   +E + +++   V+ACA
Sbjct: 394 -ACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACA 452

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               +++G  IH  +IK G G +  V ++++DMY +   L +A +    + EK  ++WN+
Sbjct: 453 GQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHARLEEKTTVSWNS 512

Query: 286 IIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           II+G+     SE     FS+M      P+ +T+ +++  CA +A +  G+Q+HA I++  
Sbjct: 513 IISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCANMATIELGKQIHAQILKLQ 572

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           L  ++ +A+ L+DMY+KCGN+ DS+ +F +   RD VTW++M+  Y  HG G++AI LF+
Sbjct: 573 LHSDVYIASTLVDMYSKCGNMQDSRLMFEKAPKRDYVTWSAMICAYAYHGLGEKAINLFE 632

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRA 463
           EM    V+P+  +F++VL AC+H G VD+GL YF+ M + Y ++P  E Y C+VDLLGR+
Sbjct: 633 EMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQKMLSHYGLDPQMEHYSCMVDLLGRS 692

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G+V EA +LI+SMPF+ D+ +W  LL  CK      + + A   +L L P     Y++L+
Sbjct: 693 GQVNEALKLIESMPFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQDSSAYVLLA 752

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           N+YA  G W E AK R IM+    KKE G SWIEVRD+V  F+  DK    ++ +Y    
Sbjct: 753 NVYAIVGMWGEVAKMRSIMKNCKLKKEPGCSWIEVRDEVHTFLVGDKAHPRSEEIYEQTH 812

Query: 584 MLIRHMNETAYEPDIDCLIHD 604
           +L+  M    Y PDID ++ +
Sbjct: 813 LLVDEMKWAGYVPDIDFMLDE 833



 Score =  208 bits (529), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 119/433 (27%), Positives = 224/433 (51%), Gaps = 2/433 (0%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P+   I    LI  Y   G +  A++LFD MPERDVVSW  +++ Y     + ++  +F
Sbjct: 67  MPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIF 126

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
           V M   ++  +  T + +LKAC G++       VH +AI+ G E  +   ++L+D+Y+ C
Sbjct: 127 VRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKC 186

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
              +D+A  VF +M  +N V W+ +I GY  +     GL +FK+ML  G+ ++  +++  
Sbjct: 187 -KKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASV 245

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
            R+CA       G  +H   +K  F  +  +  + LDMY + + + DA + F+ +     
Sbjct: 246 FRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPR 305

Query: 281 ITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
            ++N II GY +     + L++F  ++      +  + +  + AC+ +     G Q+H  
Sbjct: 306 QSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQLHGL 365

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
            V+ GL  N+ +AN ++DMY KCG + ++  IF EM  RD V+W +++  +  +    + 
Sbjct: 366 AVKCGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKT 425

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL 459
           + LF  M++S + PD   + +V+ AC+    ++ G +    +    +  +  +   +VD+
Sbjct: 426 LSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDM 485

Query: 460 LGRAGRVKEAYEL 472
            G+ G + EA ++
Sbjct: 486 YGKCGMLMEAEKI 498



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 132/552 (23%), Positives = 239/552 (43%), Gaps = 75/552 (13%)

Query: 108 VNPNA-FTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           +NP    T S +L+ C  +K+L+    VH   I  G   +IYV N L+  Y      M+ 
Sbjct: 1   MNPTKKLTFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSS-KMNY 59

Query: 167 ARLVFNDMKWKNDVSWTTLITGYA-------------------------------HSGNG 195
           A  VF+ M  ++ +SW TLI GYA                               H+G  
Sbjct: 60  AFKVFDRMPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVN 119

Query: 196 YGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSI 255
              + +F  M    +  +  +F++ ++AC+       G  +H   I+ GF +++   +++
Sbjct: 120 RKSIEIFVRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSAL 179

Query: 256 LDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNC 314
           +DMY +   L DA + F EM E++L+ W+ +IAGY ++    E L +F  M       + 
Sbjct: 180 VDMYSKCKKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQ 239

Query: 315 FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSE 374
            T+ S+  +CA L+A   G Q+H   ++     +  +  A +DMYAKC  + D+ K+F+ 
Sbjct: 240 STYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNT 299

Query: 375 MSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434
           + +    ++ ++++GY     G +A+++F  + ++ +  D I     LTACS      EG
Sbjct: 300 LPNPPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEG 359

Query: 435 LKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA------------------------- 469
           ++         +  N  +   ++D+ G+ G + EA                         
Sbjct: 360 IQLHGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQN 419

Query: 470 YELIKSMPF---------KPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520
            E++K++           +PD+  +G ++ AC   +  N G     R+  +K  M   + 
Sbjct: 420 EEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRI--IKSGMGLDWF 477

Query: 521 ILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYG 580
           + S +    GK     +  KI   +  K  V  SW  +   + GF +  +  +  +Y   
Sbjct: 478 VGSALVDMYGKCGMLMEAEKIHARLEEKTTV--SWNSI---ISGFSSQKQSENAQRYFSQ 532

Query: 581 VLEMLIRHMNET 592
           +LEM I   N T
Sbjct: 533 MLEMGIIPDNYT 544


>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/561 (34%), Positives = 324/561 (57%), Gaps = 3/561 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           SI+ T  +  Y     + +A  +F+ +P     S+  +I GY   +   +A  +F  + R
Sbjct: 274 SIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALEIFQSLQR 333

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             ++ +  +LS  L AC  +K       +HG+A+K GL  +I V N+++D+Y  C  ++ 
Sbjct: 334 TYLSFDEISLSGALTACSVIKGHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCG-ALV 392

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A  +F+DM+ ++ VSW  +I  +  +      L +F  ML   +E + +++   V+ACA
Sbjct: 393 EACTIFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACA 452

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               +++G  IH  ++K G G +  V ++++DMY +   L +A +  D + EK  ++WN+
Sbjct: 453 GQQALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHDRLEEKTTVSWNS 512

Query: 286 IIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           II+G+     SE     FS+M      P+ FT+ +++  CA +A +  G+Q+HA I++  
Sbjct: 513 IISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANMATIELGKQIHAQILKLN 572

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           L  ++ +A+ L+DMY+KCGN+ DS+ +F +   RD VTW++M+  Y  HGHG++AI+LF+
Sbjct: 573 LHSDVYIASTLVDMYSKCGNMQDSRLMFEKTPKRDYVTWSAMICAYAYHGHGEQAIKLFE 632

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRA 463
           EM    V+P+  +F++VL AC+H G VD+GL YF+ M   Y ++P+ E Y C+VDLLGR+
Sbjct: 633 EMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQIMQSHYGLDPHMEHYSCMVDLLGRS 692

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
            +V EA +LI+SM F+ D+ +W  LL  CK      + + A   +L L P     Y++L+
Sbjct: 693 DQVNEALKLIESMHFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQDSSAYVLLA 752

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           N+YA  G W E AK R IM+    KKE G SWIEVRD+V  F+  DK    ++ +Y    
Sbjct: 753 NVYANVGMWGEVAKIRSIMKNCKLKKEPGCSWIEVRDEVHTFLVGDKAHPRSEEIYEQTH 812

Query: 584 MLIRHMNETAYEPDIDCLIHD 604
           +L+  M    Y PDID ++ +
Sbjct: 813 LLVDEMKWAGYVPDIDSMLDE 833



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 121/433 (27%), Positives = 225/433 (51%), Gaps = 2/433 (0%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P    I    +I  Y + G +  A++LFD MPERDVVSW  +++ Y     + ++  +F
Sbjct: 67  MPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIF 126

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
           V M   ++  +  T S VLKAC G++       VH +AI+ G E  +   ++L+D+Y+ C
Sbjct: 127 VRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKC 186

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
              +D A  +F +M  +N V W+ +I GY  +     GL +FK+ML  G+ ++  +++  
Sbjct: 187 -KKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASV 245

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
            R+CA       G  +H   +K  F  +  +  + LDMY + D +SDA + F+ +     
Sbjct: 246 FRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPR 305

Query: 281 ITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
            ++N II GY +     + L +F  ++    S +  + +  + AC+ +     G Q+H  
Sbjct: 306 QSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHGL 365

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
            V+ GL  N+ +AN ++DMY KCG + ++  IF +M  RD V+W +++  +  +    + 
Sbjct: 366 AVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKT 425

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL 459
           + LF  M++S + PD   + +V+ AC+    ++ G++    +    +  +  +   +VD+
Sbjct: 426 LSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSALVDM 485

Query: 460 LGRAGRVKEAYEL 472
            G+ G + EA ++
Sbjct: 486 YGKCGMLMEAEKI 498



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 129/544 (23%), Positives = 236/544 (43%), Gaps = 75/544 (13%)

Query: 108 VNPNA-FTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           +NP   FT S +L+ C  +K+L+     H   I      +IYV N L+  Y     +M+ 
Sbjct: 1   MNPTKKFTFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSS-NMNY 59

Query: 167 ARLVFNDMKWKNDVSWTTLITGYA-------------------------------HSGNG 195
           A  VF+ M  ++ +SW T+I GYA                               H+G  
Sbjct: 60  AFKVFDRMPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVN 119

Query: 196 YGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSI 255
              + +F  M    +  +  +FS+ ++AC+       G  +H   I+ GF +++   +++
Sbjct: 120 RKSIEIFVRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSAL 179

Query: 256 LDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNC 314
           +DMY +   L  A + F EM E++L+ W+ +IAGY ++    E L +F  M       + 
Sbjct: 180 VDMYSKCKKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQ 239

Query: 315 FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSE 374
            T+ S+  +CA L+A   G Q+H   ++     +  +  A +DMYAKC  +SD+ K+F+ 
Sbjct: 240 STYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNT 299

Query: 375 MSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434
           + +    ++ ++++GY     G +A+E+F  + ++ +  D I     LTACS      EG
Sbjct: 300 LPNPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEG 359

Query: 435 LKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA------------------------- 469
           ++         +  N  +   ++D+ G+ G + EA                         
Sbjct: 360 IQLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQN 419

Query: 470 YELIKSMPF---------KPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520
            E++K++           +PD+  +G ++ AC   +  N G     R+  +K  M   + 
Sbjct: 420 EEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRI--VKSGMGLDWF 477

Query: 521 ILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYG 580
           + S +    GK     +  KI   +  K  V  SW  +   + GF +  +  +  +Y   
Sbjct: 478 VGSALVDMYGKCGMLMEAEKIHDRLEEKTTV--SWNSI---ISGFSSQKQSENAQRYFSQ 532

Query: 581 VLEM 584
           +LEM
Sbjct: 533 MLEM 536


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/566 (36%), Positives = 325/566 (57%), Gaps = 8/566 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV-R 105
            ++T LI  Y        AR +F +MP RDVV+W  M+AGY +   ++ A    ++M   
Sbjct: 136 FVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDH 195

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGS---IYVENSLMDVYATCCI 162
             + PNA TL S+L       +L     +H   ++  LE +   + +  +L+D+YA C  
Sbjct: 196 GGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQ 255

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGV-EMNPYSFSIAV 221
            +   R VF+ M  +NDV+W+ LI G+           +FK+ML+EG+  ++  S + A+
Sbjct: 256 LVYACR-VFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASAL 314

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
           R CAS   +  G  +HA + K G  ++L   NS+L MY +   +++A  +FDE+  KD I
Sbjct: 315 RVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTI 374

Query: 282 TWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           ++  +++G  ++G +E    +F KM++    P+  T  S+I AC+ LAAL  G+  H  +
Sbjct: 375 SYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSV 434

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           + RGL    ++ N+LIDMYAKCG I  S+++F +M  RD+V+W +M+ GYG HG GKEA 
Sbjct: 435 IIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEAT 494

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDL 459
            LF  M   G  PD + F+ ++ ACSH+GLV EG  +F +M + Y + P  E Y C+VDL
Sbjct: 495 TLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDL 554

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
           L R G + EAY+ I+SMP K D  VWG LLGAC+ H+  +LGK  +  +  L P   G +
Sbjct: 555 LARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNF 614

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVY 579
           ++LSNI++A G+++E A+ R I +  G KK  G SWIE+   +  F+  D+    ++ +Y
Sbjct: 615 VLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIY 674

Query: 580 GVLEMLIRHMNETAYEPDIDCLIHDL 605
             L+ ++  + +  Y+ D   ++ DL
Sbjct: 675 HELDNIMVDIKKLGYQADTSFVLQDL 700



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 123/469 (26%), Positives = 221/469 (47%), Gaps = 17/469 (3%)

Query: 53  IKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNA 112
           ++ +   G +  AR +FD +P  D  ++  +I  Y+     + A  ++  M+R  V PN 
Sbjct: 41  LEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNK 100

Query: 113 FTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFN 172
           +T   VLKAC  +  L     +H  A   GL   ++V  +L+D+Y  C      AR VF 
Sbjct: 101 YTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCA-RFGPARNVFA 159

Query: 173 DMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAVRACASTGWVS 231
            M  ++ V+W  ++ GYA+ G  +  +    +M    G+  N  +    +   A  G + 
Sbjct: 160 KMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALF 219

Query: 232 FGKLIHAAVIKHGFGSN---LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            G  IHA  ++     N   + +  ++LDMY +   L  A + F  M  ++ +TW+ +I 
Sbjct: 220 QGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIG 279

Query: 289 GYEKSGS-SECLNMFSKMKSERFSPNCF----TFTSIIAACATLAALSCGQQVHAGIVRR 343
           G+      +E  N+F  M  E     CF    +  S +  CA+LA L  G Q+HA I + 
Sbjct: 280 GFVLCDRMTEAFNLFKDMLVEGL---CFLSATSVASALRVCASLADLHMGTQLHALIAKS 336

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G+  +L  +N+L+ MYAK G I+++   F E++ +D +++ +++ G   +G  +EA  +F
Sbjct: 337 GIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVF 396

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
            +M    + PD    ++++ ACSH   +  G     S+    +     I   ++D+  + 
Sbjct: 397 KKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKC 456

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLK 512
           G++  + ++   MP + D   W  ++     H    LGK A    L +K
Sbjct: 457 GKIDLSRQVFDKMPAR-DVVSWNTMIAGYGIH---GLGKEATTLFLGMK 501


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/545 (36%), Positives = 314/545 (57%), Gaps = 5/545 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y   G I  AR LFD+MP+RD +SW  MI+GY       +   +F  M    V+P+
Sbjct: 239 LITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPD 298

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
             T+++V  AC+ + +      VHG  +K    G I + NSL+ +Y++    ++ A  VF
Sbjct: 299 LITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLG-RLEEAETVF 357

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           + M+ K+ VSWT +I         +  +  +K M LEG+  +  +    + ACA  G + 
Sbjct: 358 SRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLD 417

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            G  +H   IK G  S++ V NS++DMY +  C+ +A + F  ++ K++++W ++I G  
Sbjct: 418 LGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLR 477

Query: 292 KSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
            +  S E L  F +MK E   PN  T  S+++ACA + AL  G+++HA  +R G+  +  
Sbjct: 478 INNRSFEALLFFRQMK-ESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGF 536

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           L NA++DMY +CG    +   F+    +D+  W  ++ GY   G  K A+ELFD+M++  
Sbjct: 537 LPNAILDMYVRCGRKVPALNQFNS-QKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELE 595

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
           + PD I F+++L ACS +G+V EGL+YF  M N YN+ PN + Y CVVD+LGRAG++ +A
Sbjct: 596 IHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDA 655

Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529
           Y+ I+ MP +PD ++WG LL AC+ HR   LG++AA RV +     +G YI+L N+YA  
Sbjct: 656 YDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGC 715

Query: 530 GKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHM 589
           G W++ +K R +MR  G   + G SW+E++ KV  F++ D   S ++ + GVL+     M
Sbjct: 716 GNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVLDGFCSKM 775

Query: 590 NETAY 594
            E  +
Sbjct: 776 KENGF 780



 Score =  231 bits (590), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 127/443 (28%), Positives = 230/443 (51%), Gaps = 5/443 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L   L+  +   G + +A  +F +M ERDV SW V++ GY    C ++A  ++  M+  E
Sbjct: 134 LGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAE 193

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + PN +T  SVLK C G+  ++    +H   I+ G E  + V N+L+ +Y  C   + NA
Sbjct: 194 IRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCG-DISNA 252

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R++F+ M  ++ +SW  +I+GY  +G G  GL +F  M    V+ +  + +    AC   
Sbjct: 253 RMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELL 312

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
                G+ +H  V+K  FG ++ + NS++ MY     L +A   F  M  KD+++W  +I
Sbjct: 313 DNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMI 372

Query: 288 AGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           A         + +  +  M+ E   P+  T  S+++ACA +  L  G ++H   ++ GL 
Sbjct: 373 ASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLV 432

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            ++ ++N+LIDMY+KC  + ++ ++F  +S +++V+WTS+++G   +    EA+  F +M
Sbjct: 433 SHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM 492

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
            K  ++P+ +  ++VL+AC+  G +  G +         V  +  +   ++D+  R GR 
Sbjct: 493 -KESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRK 551

Query: 467 KEAYELIKSMPFKPDESVWGPLL 489
             A     S   K D + W  LL
Sbjct: 552 VPALNQFNSQ--KKDVTAWNILL 572



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/466 (27%), Positives = 235/466 (50%), Gaps = 18/466 (3%)

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           +R EV  +A+   ++L+ C+  ++    + V+ +         + + N+L+ ++      
Sbjct: 91  LRIEVEEDAYI--ALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLGNALLSMFVRFGNL 148

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +D A  VF  M  ++  SW  L+ GYA +G     L ++  ML   +  N Y+F   ++ 
Sbjct: 149 LD-AWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKT 207

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           CA    ++ GK IHA VI+ GF S++ V N+++ MY +   +S+A   FD+M ++D I+W
Sbjct: 208 CAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISW 267

Query: 284 NTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N +I+GY E  G  E L +FS M+     P+  T T++ +AC  L     G+ VH  +V+
Sbjct: 268 NAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVK 327

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
               G++++ N+LI MY+  G + +++ +FS M  +D+V+WT+M+    +H    +A+E 
Sbjct: 328 SEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVET 387

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           +  M   G+ PD I  ++VL+AC+  G +D G++  +      +  +  +   ++D+  +
Sbjct: 388 YKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSK 447

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
              V  A E+ +++  K   S    +LG     R+ N    A L    +K +M    + L
Sbjct: 448 CKCVDNALEVFRNISGKNVVSWTSLILGL----RINNRSFEALLFFRQMKESMKPNSVTL 503

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIAN 568
            ++ +A       A+   +MRG    KE+    +       GF+ N
Sbjct: 504 ISVLSA------CARIGALMRG----KEIHAHALRTGVGFDGFLPN 539



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 177/345 (51%), Gaps = 10/345 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +  +LI+ Y   G +EEA T+F  M  +DVVSWT MIA   S     +A   +  M    
Sbjct: 336 MNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEG 395

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDN 166
           + P+  TL SVL AC  +  L     +H +AIK GL   + V NSL+D+Y+ C C+  DN
Sbjct: 396 ILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCV--DN 453

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  VF ++  KN VSWT+LI G   +   +  L  F++M  E ++ N  +    + ACA 
Sbjct: 454 ALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM-KESMKPNSVTLISVLSACAR 512

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G +  GK IHA  ++ G G +  + N+ILDMY R      A   F+   +KD+  WN +
Sbjct: 513 IGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNS-QKKDVTAWNIL 571

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-- 343
           + GY + G ++  + +F KM      P+  TF S++ AC+    ++ G + +  I++   
Sbjct: 572 LTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLE-YFNIMKNKY 630

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMM 387
            L  NL     ++D+  + G + D+     +M  R D   W +++
Sbjct: 631 NLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALL 675


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/565 (36%), Positives = 325/565 (57%), Gaps = 8/565 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV-RN 106
           ++T LI  Y        AR +F +MP RDVV+W  M+AGY +   ++ A    ++M    
Sbjct: 137 VSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHG 196

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGS---IYVENSLMDVYATCCIS 163
            + PNA TL S+L       +L     +H   ++  LE +   + +  +L+D+YA C   
Sbjct: 197 GLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQL 256

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGV-EMNPYSFSIAVR 222
           +   R VF+ M  +NDV+W+ LI G+           +FK+ML+EG+  ++  S + A+R
Sbjct: 257 VYACR-VFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALR 315

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
            CAS   +  G  +HA + K G  ++L   NS+L MY +   +++A  +FDE+  KD I+
Sbjct: 316 VCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTIS 375

Query: 283 WNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           +  +++G  ++G +E    +F KM++    P+  T  S+I AC+ LAAL  G+  H  ++
Sbjct: 376 YGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVI 435

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
            RGL    ++ N+LIDMYAKCG I  S+++F +M  RD+V+W +M+ GYG HG GKEA  
Sbjct: 436 IRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATT 495

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLL 460
           LF  M   G  PD + F+ ++ ACSH+GLV EG  +F +M + Y + P  E Y C+VDLL
Sbjct: 496 LFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLL 555

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520
            R G + EAY+ I+SMP K D  VWG LLGAC+ H+  +LGK  +  +  L P   G ++
Sbjct: 556 ARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFV 615

Query: 521 ILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYG 580
           +LSNI++A G+++E A+ R I +  G KK  G SWIE+   +  F+  D+    ++ +Y 
Sbjct: 616 LLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYH 675

Query: 581 VLEMLIRHMNETAYEPDIDCLIHDL 605
            L+ ++  + +  Y+ D   ++ DL
Sbjct: 676 ELDNIMVDIKKLGYQADTSFVLQDL 700



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 123/469 (26%), Positives = 221/469 (47%), Gaps = 17/469 (3%)

Query: 53  IKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNA 112
           ++ +   G +  AR +FD +P  D  ++  +I  Y+     + A  ++  M+R  V PN 
Sbjct: 41  LEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNK 100

Query: 113 FTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFN 172
           +T   VLKAC  +  L     +H  A   GL   ++V  +L+D+Y  C      AR VF 
Sbjct: 101 YTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCA-RFGPARNVFA 159

Query: 173 DMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAVRACASTGWVS 231
            M  ++ V+W  ++ GYA+ G  +  +    +M    G+  N  +    +   A  G + 
Sbjct: 160 KMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALF 219

Query: 232 FGKLIHAAVIKHGFGSN---LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            G  IHA  ++     N   + +  ++LDMY +   L  A + F  M  ++ +TW+ +I 
Sbjct: 220 QGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIG 279

Query: 289 GYEKSGS-SECLNMFSKMKSERFSPNCF----TFTSIIAACATLAALSCGQQVHAGIVRR 343
           G+      +E  N+F  M  E     CF    +  S +  CA+LA L  G Q+HA I + 
Sbjct: 280 GFVLCDRMTEAFNLFKDMLVEGL---CFLSATSVASALRVCASLADLHMGTQLHALIAKS 336

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G+  +L  +N+L+ MYAK G I+++   F E++ +D +++ +++ G   +G  +EA  +F
Sbjct: 337 GIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVF 396

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
            +M    + PD    ++++ ACSH   +  G     S+    +     I   ++D+  + 
Sbjct: 397 KKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKC 456

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLK 512
           G++  + ++   MP + D   W  ++     H    LGK A    L +K
Sbjct: 457 GKIDLSRQVFDKMPAR-DVVSWNTMIAGYGIH---GLGKEATTLFLGMK 501


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/545 (36%), Positives = 314/545 (57%), Gaps = 5/545 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y   G I  AR LFD+MP+RD +SW  MI+GY       +   +F  M    V+P+
Sbjct: 239 LITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPD 298

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
             T+++V  AC+ + +      VHG  +K    G I + NSL+ +Y++    ++ A  VF
Sbjct: 299 LITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLG-RLEEAETVF 357

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           + M+ K+ VSWT +I         +  +  +K M LEG+  +  +    + ACA  G + 
Sbjct: 358 SRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLD 417

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            G  +H   IK G  S++ V NS++DMY +  C+ +A + F  ++ K++++W ++I G  
Sbjct: 418 LGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLR 477

Query: 292 KSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
            +  S E L  F +MK E   PN  T  S+++ACA + AL  G+++HA  +R G+  +  
Sbjct: 478 INNRSFEALLFFRQMK-ESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGF 536

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           L NA++DMY +CG    +   F+    +D+  W  ++ GY   G  K A+ELFD+M++  
Sbjct: 537 LPNAILDMYVRCGRKVPALNQFNS-QKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELE 595

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
           + PD I F+++L ACS +G+V EGL+YF  M N YN+ PN + Y CVVD+LGRAG++ +A
Sbjct: 596 IHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDA 655

Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529
           Y+ I+ MP +PD ++WG LL AC+ HR   LG++AA RV +     +G YI+L N+YA  
Sbjct: 656 YDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGC 715

Query: 530 GKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHM 589
           G W++ +K R +MR  G   + G SW+E++ KV  F++ D   S ++ + GVL+     M
Sbjct: 716 GNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVLDGFCSKM 775

Query: 590 NETAY 594
            E  +
Sbjct: 776 KENGF 780



 Score =  231 bits (590), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 127/443 (28%), Positives = 230/443 (51%), Gaps = 5/443 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L   L+  +   G + +A  +F +M ERDV SW V++ GY    C ++A  ++  M+  E
Sbjct: 134 LGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAE 193

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + PN +T  SVLK C G+  ++    +H   I+ G E  + V N+L+ +Y  C   + NA
Sbjct: 194 IRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCG-DISNA 252

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R++F+ M  ++ +SW  +I+GY  +G G  GL +F  M    V+ +  + +    AC   
Sbjct: 253 RMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELL 312

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
                G+ +H  V+K  FG ++ + NS++ MY     L +A   F  M  KD+++W  +I
Sbjct: 313 DNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMI 372

Query: 288 AGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           A         + +  +  M+ E   P+  T  S+++ACA +  L  G ++H   ++ GL 
Sbjct: 373 ASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLV 432

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            ++ ++N+LIDMY+KC  + ++ ++F  +S +++V+WTS+++G   +    EA+  F +M
Sbjct: 433 SHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM 492

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
            K  ++P+ +  ++VL+AC+  G +  G +         V  +  +   ++D+  R GR 
Sbjct: 493 -KESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRK 551

Query: 467 KEAYELIKSMPFKPDESVWGPLL 489
             A     S   K D + W  LL
Sbjct: 552 VPALNQFNSQ--KKDVTAWNILL 572



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/466 (27%), Positives = 235/466 (50%), Gaps = 18/466 (3%)

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           +R EV  +A+   ++L+ C+  ++    + V+ +         + + N+L+ ++      
Sbjct: 91  LRIEVEEDAYI--ALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLGNALLSMFVRFGNL 148

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +D A  VF  M  ++  SW  L+ GYA +G     L ++  ML   +  N Y+F   ++ 
Sbjct: 149 LD-AWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKT 207

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           CA    ++ GK IHA VI+ GF S++ V N+++ MY +   +S+A   FD+M ++D I+W
Sbjct: 208 CAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISW 267

Query: 284 NTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N +I+GY E  G  E L +FS M+     P+  T T++ +AC  L     G+ VH  +V+
Sbjct: 268 NAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVK 327

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
               G++++ N+LI MY+  G + +++ +FS M  +D+V+WT+M+    +H    +A+E 
Sbjct: 328 SEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVET 387

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           +  M   G+ PD I  ++VL+AC+  G +D G++  +      +  +  +   ++D+  +
Sbjct: 388 YKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSK 447

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
              V  A E+ +++  K   S    +LG     R+ N    A L    +K +M    + L
Sbjct: 448 CKCVDNALEVFRNISGKNVVSWTSLILGL----RINNRSFEALLFFRQMKESMKPNSVTL 503

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIAN 568
            ++ +A       A+   +MRG    KE+    +       GF+ N
Sbjct: 504 ISVLSA------CARIGALMRG----KEIHAHALRTGVGFDGFLPN 539



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 177/345 (51%), Gaps = 10/345 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +  +LI+ Y   G +EEA T+F  M  +DVVSWT MIA   S     +A   +  M    
Sbjct: 336 MNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEG 395

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDN 166
           + P+  TL SVL AC  +  L     +H +AIK GL   + V NSL+D+Y+ C C+  DN
Sbjct: 396 ILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCV--DN 453

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  VF ++  KN VSWT+LI G   +   +  L  F++M  E ++ N  +    + ACA 
Sbjct: 454 ALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM-KESMKPNSVTLISVLSACAR 512

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G +  GK IHA  ++ G G +  + N+ILDMY R      A   F+   +KD+  WN +
Sbjct: 513 IGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNS-QKKDVTAWNIL 571

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-- 343
           + GY + G ++  + +F KM      P+  TF S++ AC+    ++ G + +  I++   
Sbjct: 572 LTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLE-YFNIMKNKY 630

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMM 387
            L  NL     ++D+  + G + D+     +M  R D   W +++
Sbjct: 631 NLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALL 675


>gi|449435958|ref|XP_004135761.1| PREDICTED: cohesin subunit SA-1-like [Cucumis sativus]
          Length = 1866

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/538 (37%), Positives = 308/538 (57%), Gaps = 6/538 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPE--RDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
            L  NL+  Y   G +++   LF   P+  ++VVSWT +I   T F    +A T F  M 
Sbjct: 63  FLFNNLLNLYAKCGSVDQTLLLFSSAPDDSKNVVSWTSLITQLTRFKRPFKALTFFNHMR 122

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
           R+ V PN +T S+VL AC    +  +   +H +  K G    ++V ++L+D+YA CC  M
Sbjct: 123 RSGVYPNHYTFSAVLSACTDTTASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCC-DM 181

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVE-MNPYSFSIAVRA 223
             A  VF +M  +N VSW T+I G+  +      +  FK +LLE +  ++  SFS    A
Sbjct: 182 LMAEKVFEEMPVRNLVSWNTMIVGFLQNKLYDQAIFFFKTLLLENLTALDEVSFSSVFSA 241

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           CA+ G + FGK +H   +K G  + + + NS+ DMY +    +D  + F     +D++TW
Sbjct: 242 CANAGNLEFGKQVHGVALKLGVWNLVYINNSLSDMYGKCGLFNDVAKLFSNTGARDVVTW 301

Query: 284 NTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N +I  Y  + + E   N F  M+ +   P+  +++S++ +CA LAAL  G  +H  I+R
Sbjct: 302 NIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSVLHSCANLAALYQGTLIHNQIIR 361

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            G   NL +A++LI MYAKCG++ D+ +IF E  DR++V WT+++     HGH    +EL
Sbjct: 362 SGFVKNLRVASSLITMYAKCGSLVDAFQIFEETEDRNVVCWTAIIAACQQHGHANWVVEL 421

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLG 461
           F++M++ G++PD I F++VL+ACSH G V+EG  YF SM   + + P  E Y C+VDLL 
Sbjct: 422 FEQMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNSMIKVHGIYPGHEHYACIVDLLS 481

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           RAG +  A   I+ MP KPD SVWG LL AC+ H    +GK  AL++ DL+P+  G Y++
Sbjct: 482 RAGELDRAKRFIELMPIKPDASVWGALLSACRNHSNLIMGKEVALKLFDLEPDNPGNYVL 541

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVY 579
           L NI    G   E  + R+ M  +G +KE G SWI++++    F  +DK    T+ +Y
Sbjct: 542 LCNILTRNGMLNEADEVRRKMESIGVRKEPGCSWIDIKNSTYVFTVHDKSHEKTKEIY 599



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 110/388 (28%), Positives = 200/388 (51%), Gaps = 13/388 (3%)

Query: 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFND 173
           +L+S+L   +  K   +A  +H   I   L    ++ N+L+++YA C  S+D   L+F+ 
Sbjct: 32  SLNSLLNCSRTSK---HATQIHSQLITTALLSLPFLFNNLLNLYAKCG-SVDQTLLLFSS 87

Query: 174 M--KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
                KN VSWT+LIT        +  L  F  M   GV  N Y+FS  + AC  T    
Sbjct: 88  APDDSKNVVSWTSLITQLTRFKRPFKALTFFNHMRRSGVYPNHYTFSAVLSACTDTTASV 147

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY- 290
            G+ +H+ V KHGF + + V+++++DMY +   +  A + F+EM  ++L++WNT+I G+ 
Sbjct: 148 HGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCDMLMAEKVFEEMPVRNLVSWNTMIVGFL 207

Query: 291 EKSGSSECLNMFSKMKSERFSP-NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
           +     + +  F  +  E  +  +  +F+S+ +ACA    L  G+QVH   ++ G+   +
Sbjct: 208 QNKLYDQAIFFFKTLLLENLTALDEVSFSSVFSACANAGNLEFGKQVHGVALKLGVWNLV 267

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
            + N+L DMY KCG  +D  K+FS    RD+VTW  M++ Y  + + ++A   F  M + 
Sbjct: 268 YINNSLSDMYGKCGLFNDVAKLFSNTGARDVVTWNIMIMAYVYNHNYEDACNSFWMMRRK 327

Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
           G  PD   + +VL +C++   + +G      +       N  +   ++ +  + G + +A
Sbjct: 328 GSIPDEASYSSVLHSCANLAALYQGTLIHNQIIRSGFVKNLRVASSLITMYAKCGSLVDA 387

Query: 470 YELIKSMPFKPDESV--WGPLLGACKEH 495
           +++ +      D +V  W  ++ AC++H
Sbjct: 388 FQIFEET---EDRNVVCWTAIIAACQQH 412


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/561 (34%), Positives = 319/561 (56%), Gaps = 4/561 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I+   L+ SY     ++ A  LF EMPE D VS+  MI GY+      +A  +FVEM  +
Sbjct: 185 IVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNS 244

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + P  FT ++VL A  G+  +     +H   IK     +++V N+L+D Y+     +D 
Sbjct: 245 GLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVID- 303

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR +F++M  ++ VS+  +I+GYA  G       +F+E+     +   + F+  +   ++
Sbjct: 304 ARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASN 363

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
           T     G+ IHA  I     S + V NS++DMY +     +A   F  +T +  + W  +
Sbjct: 364 TLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAM 423

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+ Y + G   E L +F+KM+      +  TF S++ A A++A+LS G+Q+H+ I++ G 
Sbjct: 424 ISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGF 483

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             N+   +AL+D+YAKCG+I D+ + F EM DR++V+W +M+  Y  +G  +  ++ F E
Sbjct: 484 MSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKE 543

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAG 464
           MV SG++PD + F+ VL+ACSH+GLV+EGL +F SM   Y ++P +E Y  VVD+L R+G
Sbjct: 544 MVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSG 603

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP-NMMGTYIILS 523
           R  EA +L+  MP  PDE +W  +L AC+ H+   L + AA ++ +++       Y+ +S
Sbjct: 604 RFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMS 663

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           NIYAA G+WE  +K  K MR  G KK    SW+E++ +   F AND+     + +   ++
Sbjct: 664 NIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKID 723

Query: 584 MLIRHMNETAYEPDIDCLIHD 604
           ML + M E  Y+PD  C +H+
Sbjct: 724 MLTKTMEELGYKPDTSCALHN 744



 Score =  234 bits (598), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 137/456 (30%), Positives = 236/456 (51%), Gaps = 11/456 (2%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P   ++    +I  Y   G + EAR LFD M ER  V+WT++I GY+  N   +A+ +F
Sbjct: 78  MPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELF 137

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
           V+M R    P+  T  ++L  C G +  +    V    IK G +  + V N+L+D Y   
Sbjct: 138 VQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSY--- 194

Query: 161 CIS--MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFS 218
           C S  +D A  +F +M   + VS+  +ITGY+  G     + +F EM   G  + P  F+
Sbjct: 195 CKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSG--LKPTEFT 252

Query: 219 IAVRACASTGW--VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
            A   CA+ G   +  G+ IH+ VIK  F  N+ V N++LD Y + D + DA + FDEM 
Sbjct: 253 FAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMP 312

Query: 277 EKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ 335
           E+D +++N II+GY   G  +   ++F +++   F    F F ++++  +       G+Q
Sbjct: 313 EQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQ 372

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
           +HA  +    D  + + N+L+DMYAKCG   +++ IF+ ++ R  V WT+M+  Y   G 
Sbjct: 373 IHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGF 432

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455
            +E ++LF++M ++ V  D+  F ++L A +    +  G +    +       N      
Sbjct: 433 YEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSA 492

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
           ++D+  + G +K+A +  + MP +   S W  ++ A
Sbjct: 493 LLDVYAKCGSIKDAVQTFQEMPDRNIVS-WNAMISA 527



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 123/276 (44%), Gaps = 36/276 (13%)

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS 295
           I A ++K GF  +    N  +  + +   LS A Q F++M  K+ ++ N +I+GY KSG+
Sbjct: 39  IDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGN 98

Query: 296 --------------------------------SECLNMFSKMKSERFSPNCFTFTSIIAA 323
                                            E   +F +M+     P+  TF ++++ 
Sbjct: 99  LGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSG 158

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTW 383
           C      +   QV   I++ G D  L + N L+D Y K   +  + ++F EM + D V++
Sbjct: 159 CNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSY 218

Query: 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD--EGLKYFKSM 441
            +M+ GY   G  ++A+ LF EM  SG++P    F AVL  C++ GL D   G +    +
Sbjct: 219 NAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL--CANIGLDDIVLGQQIHSFV 276

Query: 442 NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMP 477
              N   N  +   ++D   +   V +A +L   MP
Sbjct: 277 IKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMP 312



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/179 (21%), Positives = 76/179 (42%), Gaps = 31/179 (17%)

Query: 330 LSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIG 389
           L+    + A IV+ G D + + +N  +  + K G +S ++++F +M  ++ V+   M+ G
Sbjct: 33  LNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISG 92

Query: 390 YGAHGHGKEAIELFDEMV-------------------------------KSGVRPDRIVF 418
           Y   G+  EA +LFD MV                               + G  PD + F
Sbjct: 93  YVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTF 152

Query: 419 MAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMP 477
           + +L+ C+   + ++  +    +     +    +   +VD   ++ R+  A +L K MP
Sbjct: 153 VTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMP 211


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/567 (36%), Positives = 325/567 (57%), Gaps = 11/567 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L   +++  FD       R LF ++ + ++  W  MI G  S +C + A   +  M    
Sbjct: 48  LLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEG 107

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
             PN FT   VLKAC  +  L     +H + +K G +  ++V+ SL+ +YA C   +++A
Sbjct: 108 FLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGY-LEDA 166

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMN--PYSFSIA--VRA 223
             VF+D+  KN VSWT +I+GY   G     + +F+ +L    EMN  P SF+I   + A
Sbjct: 167 HKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLL----EMNLAPDSFTIVRVLSA 222

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C   G ++ G+ IH  +++ G   N+ V  S++DMY +   +  A   FD M EKD+++W
Sbjct: 223 CTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSW 282

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
             +I GY  +G   E +++F +M+ E   P+C+T   +++ACA L AL  G+ V   + R
Sbjct: 283 GAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDR 342

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
                N  L  ALID+YAKCG++S + ++F  M ++D V W +++ G   +G+ K +  L
Sbjct: 343 NEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGL 402

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLG 461
           F ++ K G++PD   F+ +L  C+HAGLVDEG +YF SM   +++ P+ E YGC+VDLLG
Sbjct: 403 FGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLG 462

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           RAG + EA++LI++MP + +  VWG LLGAC+ HR   L +LA  ++++L+P   G Y++
Sbjct: 463 RAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVL 522

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGV 581
           LSNIY+A  KW+E AK R  M     +K  G SWIEV   V  F+  DK    ++ +Y  
Sbjct: 523 LSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYAK 582

Query: 582 LEMLIRHMNETAYEPDIDCLIHDLEGE 608
           L+ L + M    Y P  D ++ D+E E
Sbjct: 583 LDELTKKMKVAGYVPTTDFVLFDIEEE 609



 Score = 39.7 bits (91), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 68/143 (47%), Gaps = 8/143 (5%)

Query: 341 VRRGLDGNLALANALIDMYAKCG-NISD---SQKIFSEMSDRDLVTWTSMMIGYGAHGHG 396
           +R GL  +    N L++M  +C  + SD   ++ +F ++   ++  W +M+ G  ++   
Sbjct: 38  LRFGLCHD----NYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCF 93

Query: 397 KEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCV 456
            +AIE +  M   G  P+   F  VL AC+    +  G+K    +     + +  +   +
Sbjct: 94  DDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSL 153

Query: 457 VDLLGRAGRVKEAYELIKSMPFK 479
           V L  + G +++A+++   +P K
Sbjct: 154 VCLYAKCGYLEDAHKVFDDIPDK 176


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/542 (38%), Positives = 322/542 (59%), Gaps = 14/542 (2%)

Query: 73  PERDVVSWTVMIAGYTSFNCH----NQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSL 128
           P R V   + ++  + +F CH    ++A      M R+ V  +A T S ++K C    ++
Sbjct: 13  PLRYVADPSPLVNEFANF-CHQWDLHRAMRAMDAMERHGVFADAITYSELIKCCSARGAV 71

Query: 129 SNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITG 188
                VH     +G E  ++V N+L+++Y    + ++ A  +F++M  +N VSWTT+I+ 
Sbjct: 72  QEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNL-LEEAEDLFDEMPERNVVSWTTMISA 130

Query: 189 YAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSN 248
           Y++  N    L     M  EGV  N +++S  +RAC   G  +  +L H  +IK G  S+
Sbjct: 131 YSNKLND-KALKCLILMFREGVRPNMFTYSSVLRAC--DGLPNLRQL-HCGIIKTGLESD 186

Query: 249 LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKS 307
           + V ++++D+Y ++  L +A   FDEM  +DL+ WN+II G+ + S  +E LN+F +MK 
Sbjct: 187 VFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKR 246

Query: 308 ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISD 367
             F  +  T TS++ AC  LA L  G+QVH  +++   D +L L NALIDMY KCG++ D
Sbjct: 247 AGFLADQATLTSVLRACTGLALLELGRQVHVHVLK--FDQDLILNNALIDMYCKCGSLED 304

Query: 368 SQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH 427
           +   FS M ++D+++W++M+ G   +G+ ++A+ELF+ M +SG RP+ I  + VL ACSH
Sbjct: 305 ANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSH 364

Query: 428 AGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWG 486
           AGLV++G  YF+SM   + V+P +E YGC++DLLGRAGR+ EA +LI  M  +PD   W 
Sbjct: 365 AGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWR 424

Query: 487 PLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546
            LLGAC+ HR  +L   AA ++++L+P   GTYI+LSNIYA   +WE+ A+ RK M   G
Sbjct: 425 TLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRG 484

Query: 547 SKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
            +K  G SWIEV  ++  FI  D      + +   L  LI  +    Y PD + ++ DLE
Sbjct: 485 IRKTPGCSWIEVDKQIHVFILGDTSHPKIEEIVQRLNDLIERVMGVGYVPDTNFVLQDLE 544

Query: 607 GE 608
           GE
Sbjct: 545 GE 546



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 199/371 (53%), Gaps = 33/371 (8%)

Query: 45  PSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           P +   N L+  Y    L+EEA  LFDEMPER+VVSWT MI+ Y++   +++A    + M
Sbjct: 88  PKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYSN-KLNDKALKCLILM 146

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
            R  V PN FT SSVL+AC G+ +L     +H   IK GLE  ++V ++L+DVY+     
Sbjct: 147 FREGVRPNMFTYSSVLRACDGLPNLRQ---LHCGIIKTGLESDVFVRSALIDVYSKWS-D 202

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +DNA  VF++M  ++ V W ++I G+A + +G   L +FK M   G   +  + +  +RA
Sbjct: 203 LDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRA 262

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C     +  G+ +H  V+K  F  +L + N+++DMYC+   L DAN  F  M EKD+I+W
Sbjct: 263 CTGLALLELGRQVHVHVLK--FDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISW 320

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           +T++AG  ++G S + L +F  MK     PN  T   ++ AC+           HAG+V 
Sbjct: 321 STMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACS-----------HAGLVE 369

Query: 343 R------------GLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIG 389
           +            G+D        LID+  + G + ++ K+  EM  + D VTW +++  
Sbjct: 370 KGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGA 429

Query: 390 YGAHGHGKEAI 400
              H +   AI
Sbjct: 430 CRVHRNVDLAI 440



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 134/286 (46%), Gaps = 13/286 (4%)

Query: 6   LLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEA 65
           + +Y++        P ++Q    + K+ ++SD          + + LI  Y     ++ A
Sbjct: 155 MFTYSSVLRACDGLPNLRQLHCGIIKTGLESD--------VFVRSALIDVYSKWSDLDNA 206

Query: 66  RTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGM 125
             +FDEMP RD+V W  +I G+   +  N+A  +F  M R     +  TL+SVL+AC G+
Sbjct: 207 LGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGL 266

Query: 126 KSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTL 185
             L     VH   +K   +  + + N+L+D+Y  C  S+++A   F+ M  K+ +SW+T+
Sbjct: 267 ALLELGRQVHVHVLK--FDQDLILNNALIDMYCKCG-SLEDANSAFSRMVEKDVISWSTM 323

Query: 186 ITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIK-HG 244
           + G A +G     L +F+ M   G   N  +    + AC+  G V  G     ++ K  G
Sbjct: 324 VAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFG 383

Query: 245 FGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLITWNTIIAG 289
                     ++D+  R   L +A +   EM  E D +TW T++  
Sbjct: 384 VDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGA 429


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 227/647 (35%), Positives = 336/647 (51%), Gaps = 79/647 (12%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMP--ERDVVSWTVMIAGYTSFNCHNQAWT 98
           IP   +I  T LI +Y   G +E  R +F+  P   RD V +  MI GY      + A  
Sbjct: 74  IPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALE 133

Query: 99  VFVEMVRNEVNPNAFTLSSVLKA-CKGMKSLSNAALVHGMAIKEGLEG-SIYVENSLMDV 156
           +F  M R++  P+ FT +SVL A    + +      +H   +K G+   S  V N+L+ V
Sbjct: 134 LFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSV 193

Query: 157 Y-------ATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGN--------------- 194
           Y          C +M +AR +F++M  +++++WTT+ITGY  + +               
Sbjct: 194 YVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENL 253

Query: 195 ---------GYGGLGVFKE-------MLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHA 238
                    GY   G F+E       M   G++ +  +++  + ACA+ G    GK +HA
Sbjct: 254 GAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHA 313

Query: 239 AVIKHGFGSN----LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG 294
            ++K+    N    L V N+++ +YC+ + + +A + F  M  +++ITWN I++GY  +G
Sbjct: 314 YILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAG 373

Query: 295 --------------------------------SSECLNMFSKMKSERFSPNCFTFTSIIA 322
                                             E L +F +M+ + F P  F F   + 
Sbjct: 374 RMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALT 433

Query: 323 ACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVT 382
           AC+ L AL  G+Q+HA +V  G + +L++ NA+I MYAKCG +  ++ +F  M   DLV+
Sbjct: 434 ACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVS 493

Query: 383 WTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM- 441
           W SM+   G HGHG +AIELFD+M+K GV PDRI F+ VLTACSHAGLV++G  YF SM 
Sbjct: 494 WNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSML 553

Query: 442 NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLG 501
             Y + P ++ Y  +VDL  RAG    A  +I SMP KP   VW  LL  C+ H   +LG
Sbjct: 554 ESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLG 613

Query: 502 KLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDK 561
             AA ++  L P   GTY++LSNIYA  G+W + AK RK+MR    +KE   SWIEV +K
Sbjct: 614 IEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENK 673

Query: 562 VCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           V  F+ +D +      VY  LE L   M +  Y PD   ++HD+E E
Sbjct: 674 VHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYE 720



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 95/414 (22%), Positives = 172/414 (41%), Gaps = 91/414 (21%)

Query: 213 NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYF 272
           N Y+  + + +       S  + +HA +I  GF      +N +L+MYC+   +  A Q F
Sbjct: 12  NRYAEKLQLCSPQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLF 71

Query: 273 DEMTEKDLIT---------------------------------WNTIIAGYEKSGSSE-C 298
           +E+   D I                                  +N +I GY  +G     
Sbjct: 72  EEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSA 131

Query: 299 LNMFSKMKSERFSPNCFTFTSIIAACATLAA--LSCGQQVHAGIVRRGLDG-NLALANAL 355
           L +F  M+ + F P+ FTFTS+++A          CG Q+H  +V+ G+   + ++ NAL
Sbjct: 132 LELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCG-QMHCAVVKTGMGCVSSSVLNAL 190

Query: 356 IDMYAK--------CGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           + +Y K        C  +  ++K+F EM  RD +TWT+M+ GY  +     A E+F+ MV
Sbjct: 191 LSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMV 250

Query: 408 KS-------------------------------GVRPDRIVFMAVLTACSHAGLVDEGLK 436
           ++                               G++ D I +  +++AC++ G    G +
Sbjct: 251 ENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQ 310

Query: 437 YFKSMNDYNVNPNK----EIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGAC 492
               +    +NPN      +   ++ L  +  +V EA ++  +MP + +   W  +L   
Sbjct: 311 MHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVR-NIITWNAILSG- 368

Query: 493 KEHRLPNLGKL-AALRVLDLKP--NMMGTYIILSNIYAAEGKWEEFAKFRKIMR 543
                 N G++  A    +  P  N++   +++S + A  G  +E  K  K MR
Sbjct: 369 ----YVNAGRMEEAKSFFEEMPVKNLLTLTVMISGL-AQNGFGDEGLKLFKQMR 417


>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
          Length = 864

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/594 (33%), Positives = 331/594 (55%), Gaps = 14/594 (2%)

Query: 8   SYAATFH-CHKIPPI--IKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEE 64
           +YA+ F  C  +P +   +Q      K+   SD         ++ T ++  Y   G + +
Sbjct: 254 AYASAFRSCAAMPCLSTARQLHAHAIKNVFSSD--------RVVGTAIVDVYAKAGNLVD 305

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           AR  F  +P  +V +   M+ G        +A  +F  M R+ V  +  +LS V  AC  
Sbjct: 306 ARRAFIGLPHHNVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAE 365

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTT 184
           +K       VH +A+K G +  + V N+++D+Y  C  ++  A LVF +M+ ++ VSW  
Sbjct: 366 VKGYFQGLQVHCLAVKSGFDVDVCVRNAILDLYGKC-KALVEAYLVFQEMEQRDSVSWNA 424

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG 244
           +I     +      +    EML  G+E + +++   ++ACA    + +G ++H   IK G
Sbjct: 425 IIAALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSG 484

Query: 245 FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFS 303
            G +  V ++++DMYC+   +++A +  D +  ++L++WN+II+G+  +  SE     FS
Sbjct: 485 LGLDAFVSSTVVDMYCKCGAITEAQKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFS 544

Query: 304 KMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG 363
           +M      P+ FT+ +++  CA LA +  G+Q+H  I+++ + G+  +++ L+DMYAKCG
Sbjct: 545 EMLDMGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCG 604

Query: 364 NISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLT 423
           N+ DS  +F +    D V+W +M+ GY  HG G EA+E+F+ M ++ V P+   F+AVL 
Sbjct: 605 NMPDSLLMFEKARKLDFVSWNAMICGYALHGQGLEALEMFERMQRANVVPNHATFVAVLR 664

Query: 424 ACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDE 482
           ACSH GL+D+G +YF  M   Y + P  E + C+VD+LGR+   +EA E I+SMP + D 
Sbjct: 665 ACSHVGLLDDGCQYFHLMTSRYKLVPQLEHFACMVDILGRSKGPQEALEFIRSMPIEADA 724

Query: 483 SVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIM 542
            VW  LL  CK  +   + + AA  VL L P+    YI+LSN+YA  GKW + ++ R++M
Sbjct: 725 VVWKTLLSICKIRQDVEVAETAASNVLRLDPDDASVYILLSNVYAGSGKWVDVSRTRRLM 784

Query: 543 RGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEP 596
           R    +KE G SWIEV+ ++ GF+  DK+   ++ VY +L  LI  M  + YEP
Sbjct: 785 RQGRLRKEPGCSWIEVQSEMHGFLVGDKVHPRSKEVYEMLNSLIGEMKLSGYEP 838



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 142/543 (26%), Positives = 257/543 (47%), Gaps = 45/543 (8%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P   ++    ++ +Y   G  + A +LF  MP+ DVVSW  +I+GY        +  + 
Sbjct: 80  MPHRDTVSWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLS 139

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
           +EM R  V  +  TL+ +LK+C G+  L+    +H +A+K GLE  +   ++L+D+Y   
Sbjct: 140 MEMSRRGVALDRTTLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGK- 198

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
           C S+D+A   F+ M  +N VSW   I G   +     G+ +F +M   G+ ++  +++ A
Sbjct: 199 CRSLDDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASA 258

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
            R+CA+   +S  + +HA  IK+ F S+  V  +I+D+Y +   L DA + F  +   ++
Sbjct: 259 FRSCAAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNV 318

Query: 281 ITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
            T N ++ G  ++G  +E + +F  M       +  + + + +ACA +     G QVH  
Sbjct: 319 ETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCL 378

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
            V+ G D ++ + NA++D+Y KC  + ++  +F EM  RD V+W +++     +   ++ 
Sbjct: 379 AVKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDT 438

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL 459
           I   +EM++SG+ PD   + +VL AC+    ++ GL          +  +  +   VVD+
Sbjct: 439 IAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDM 498

Query: 460 LGRAGRVKEAYEL----------------------------------IKSMPFKPDESVW 485
             + G + EA +L                                  +  M  KPD   +
Sbjct: 499 YCKCGAITEAQKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTY 558

Query: 486 GPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII---LSNIYAAEGKWEE----FAKF 538
             +L  C       LGK    ++  +K  M+G   I   L ++YA  G   +    F K 
Sbjct: 559 ATVLDTCANLATIELGKQIHGQI--IKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKA 616

Query: 539 RKI 541
           RK+
Sbjct: 617 RKL 619



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 106/429 (24%), Positives = 201/429 (46%), Gaps = 41/429 (9%)

Query: 114 TLSSVLKACK--GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
           T S + + C   G  +L+     H   +  G   + +V N L+ +YA C     +A  VF
Sbjct: 19  TFSHLYQLCASAGRSALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCG-GTAHAHGVF 77

Query: 172 NDMKWKNDVSWTTLITGYAHSGN------------------------GYGGLGVFK---- 203
           + M  ++ VSW T++T Y H+G+                        GY   G+F+    
Sbjct: 78  DTMPHRDTVSWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVG 137

Query: 204 ---EMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYC 260
              EM   GV ++  + ++ +++C     ++ G  IHA  +K G  +++   ++++DMY 
Sbjct: 138 LSMEMSRRGVALDRTTLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYG 197

Query: 261 RFDCLSDANQYFDEMTEKDLITWNTIIAG-YEKSGSSECLNMFSKMKSERFSPNCFTFTS 319
           +   L DA ++F  M E++ ++W   IAG  +    +  + +F +M+      +   + S
Sbjct: 198 KCRSLDDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYAS 257

Query: 320 IIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD 379
              +CA +  LS  +Q+HA  ++     +  +  A++D+YAK GN+ D+++ F  +   +
Sbjct: 258 AFRSCAAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHN 317

Query: 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439
           + T  +MM+G    G G EA++LF  M +SGV  D I    V +AC+      +GL+   
Sbjct: 318 VETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHC 377

Query: 440 SMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA-----CKE 494
                  + +  +   ++DL G+   + EAY + + M  + D   W  ++ A     C E
Sbjct: 378 LAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEME-QRDSVSWNAIIAALEQNECYE 436

Query: 495 HRLPNLGKL 503
             + +L ++
Sbjct: 437 DTIAHLNEM 445


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/564 (36%), Positives = 323/564 (57%), Gaps = 38/564 (6%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           LA  L+++Y  +G    AR +FD   E++VV + VMI  Y + N + +A ++F  M+   
Sbjct: 73  LAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCA 132

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDN 166
            NP+ +T   VLKAC G+ +L     VH   +K GL+ ++++ N+L+ +Y  C C+    
Sbjct: 133 FNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLR--E 190

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR V + M +++ VSW +++ GYA SG     L + KEM  + + +N  + ++A      
Sbjct: 191 ARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEM--DSLNLNHDAGTMA------ 242

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
                               S  PV+      Y   + +   +  F+ MT+K+LI+WN +
Sbjct: 243 --------------------SLSPVV-----CYTSLENVQYIHNMFERMTKKNLISWNVM 277

Query: 287 IAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           IA Y   S  +E +++F +M+     P+  T  S++ AC  L+AL  G+++H  I +  L
Sbjct: 278 IAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNL 337

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             NL L NAL+DMYAKCG + +++ +F +M  RD+V+WTSMM  YG  G G +A+ LF +
Sbjct: 338 RPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAK 397

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAG 464
           M+ SG  PD I F++VL+ACSH GL+D+G  YF+ M + Y + P  E + C+VDL GRAG
Sbjct: 398 MLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAG 457

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
            V+EAY  IK MP +P+E VWG LL AC+ H   ++G +AA  +  L P   G Y++LSN
Sbjct: 458 EVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSN 517

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           IYA  G W++    R  M+ +G KK  G+S +E+  +V  F+A D+     + +YG L++
Sbjct: 518 IYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDV 577

Query: 585 LIRHMNETAYEPDIDCLIHDLEGE 608
           L+  M E  Y P  +  +HD+E E
Sbjct: 578 LVGKMKELGYIPQTESALHDVEVE 601



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 4/86 (4%)

Query: 41  IPKG---PSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQA 96
           I KG   P++L  N L+  Y   G +EEAR +FD+M  RDVVSWT M++ Y        A
Sbjct: 332 IEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDA 391

Query: 97  WTVFVEMVRNEVNPNAFTLSSVLKAC 122
             +F +M+ +  NP++    SVL AC
Sbjct: 392 VALFAKMLDSGQNPDSIAFVSVLSAC 417


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/564 (36%), Positives = 331/564 (58%), Gaps = 6/564 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            +A +LI  Y   G +  AR+LFD+MP RD+ SW  MI+G        QA  V  EM   
Sbjct: 208 FVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLE 267

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            +N ++ T++S+L  C  +  +S A L+H   IK GLE  ++V N+L+++YA    ++ +
Sbjct: 268 GINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFG-NLGD 326

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSF-SIAVRACA 225
           A+ VF  M  ++ VSW ++I  Y  + +     G F +M L G+E +  +  S+A  A  
Sbjct: 327 AQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQ 386

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVM-NSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           S  + +  + +H  +++ G+     V+ N+++DMY +   +  A++ F+ +  KD+++WN
Sbjct: 387 SRDYKN-SRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWN 445

Query: 285 TIIAGYEKSG-SSECLNMFSKMKSER-FSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           T+I+GY ++G +SE + ++  M+  R    N  T+ SI+AA A + AL  G ++H  +++
Sbjct: 446 TLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIK 505

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
             L  ++ +   LID+Y KCG + D+  +F ++     V W +++  +G HGHG++A++L
Sbjct: 506 TNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKL 565

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           F EM   GV+PD + F+++L+ACSH+GLVDEG  +F  M +Y + P+ + YGC+VDLLGR
Sbjct: 566 FREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQEYGIKPSLKHYGCMVDLLGR 625

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AG ++ AY+ IK MP  PD S+WG LLGAC+ H    LGK A+ R+ ++    +G Y++L
Sbjct: 626 AGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIELGKFASDRLFEVDSENVGYYVLL 685

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           SNIYA  GKWE   K R + R  G KK  G S IEV  +V  F   ++     + +Y  L
Sbjct: 686 SNIYANVGKWEGVDKVRSLARERGLKKTPGWSSIEVNRRVDIFYTGNQSHPKCKEIYAEL 745

Query: 583 EMLIRHMNETAYEPDIDCLIHDLE 606
            +L   M    Y PD   ++ D+E
Sbjct: 746 RILTAKMKSLGYIPDYSFVLQDVE 769



 Score =  225 bits (573), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 143/509 (28%), Positives = 262/509 (51%), Gaps = 12/509 (2%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + ++  L+  Y   G +  +R  FD++  +DV +W  MI+ Y       +A   F +++ 
Sbjct: 108 NFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLL 167

Query: 106 -NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
             +   + +T   VLKAC   ++L +   +H    K G +  ++V  SL+ +Y+     +
Sbjct: 168 VTKFQADFYTFPPVLKAC---QTLVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGF-V 223

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
             AR +F+DM +++  SW  +I+G   +GN    L V  EM LEG+ M+  + +  +  C
Sbjct: 224 GIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVC 283

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           A  G +S   LIH  VIKHG    L V N++++MY +F  L DA + F +M  +D+++WN
Sbjct: 284 AQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWN 343

Query: 285 TIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           +IIA YE++         F KM+     P+  T  S+ +  A        + VH  I+RR
Sbjct: 344 SIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRR 403

Query: 344 G-LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
           G L   + + NA++DMYAK G I  + K+F+ +  +D+V+W +++ GY  +G   EAIE+
Sbjct: 404 GWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEV 463

Query: 403 FDEMVK-SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461
           +  M +   ++ ++  ++++L A +H G + +G++    +   N++ +  +  C++DL G
Sbjct: 464 YRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYG 523

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLG--ACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
           + GR+ +A  L   +P +     W  ++       H    L     ++   +KP+ + T+
Sbjct: 524 KCGRLVDAMCLFYQVP-RESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHV-TF 581

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSK 548
           I L +  +  G  +E   F  +M+  G K
Sbjct: 582 ISLLSACSHSGLVDEGKWFFHLMQEYGIK 610



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 110/417 (26%), Positives = 214/417 (51%), Gaps = 26/417 (6%)

Query: 131 AALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYA 190
           A  +H + +  G   S ++   L+++YA+    +  +R  F+ ++ K+  +W ++I+ Y 
Sbjct: 92  AKRLHALLVVSGKIQSNFISIRLVNLYASLG-DVSLSRGTFDQIQRKDVYTWNSMISAYV 150

Query: 191 HSGNGYGGLGVFKEMLL-EGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNL 249
            +G+    +  F ++LL    + + Y+F   ++AC +   +  G+ IH  V K GF  ++
Sbjct: 151 RNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQT---LVDGRKIHCWVFKLGFQWDV 207

Query: 250 PVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSE 308
            V  S++ MY RF  +  A   FD+M  +D+ +WN +I+G  ++G +++ L++  +M+ E
Sbjct: 208 FVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLE 267

Query: 309 RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDS 368
             + +  T  SI+  CA L  +S    +H  +++ GL+  L ++NALI+MYAK GN+ D+
Sbjct: 268 GINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDA 327

Query: 369 QKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHA 428
           QK+F +M  RD+V+W S++  Y  +     A   F +M  +G+ PD      +LT  S A
Sbjct: 328 QKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPD------LLTLVSLA 381

Query: 429 GLVDEGLKYFKSMNDYNVNPNKE-------IYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481
            +  +   Y  S + +     +        I   V+D+  + G +  A+++   +P K D
Sbjct: 382 SIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVK-D 440

Query: 482 ESVWGPLLGACKEHRLPNLGKLAALRVL----DLKPNMMGTYIILSNIYAAEGKWEE 534
              W  L+    ++ L +   +   R++    ++K N  GT++ +   YA  G  ++
Sbjct: 441 VVSWNTLISGYTQNGLASEA-IEVYRMMEECREIKLN-QGTWVSILAAYAHVGALQQ 495


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/583 (36%), Positives = 330/583 (56%), Gaps = 44/583 (7%)

Query: 61  LIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLK 120
           L+ ++  LF+ +     ++W  +I  YTS    +Q+   F+ M+ + + P+     SVLK
Sbjct: 55  LLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLK 114

Query: 121 ACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA---------------------- 158
           +C  +  L+    +HG  I+ GL+  +Y  N+LM++Y+                      
Sbjct: 115 SCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEM 174

Query: 159 ---------TCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG 209
                       +S D+ R +F  M  K+ VSW T+I G A +G     L + +EM   G
Sbjct: 175 TERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREM--GG 232

Query: 210 VEMNPYSFSIA--VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSD 267
             + P SF+++  +   A    +S GK IH   I+ G  +++ V +S++DMY +   ++D
Sbjct: 233 ANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVAD 292

Query: 268 ANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACAT 326
           + + F  +TE+D I+WN+IIAG  ++G   E L  F +M   +  P  ++F+SI+ ACA 
Sbjct: 293 SCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAH 352

Query: 327 LAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSM 386
           L  L  G+Q+H  I R G D N+ +A++L+DMYAKCGNI  +++IF  M  RD+V+WT+M
Sbjct: 353 LTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAM 412

Query: 387 MIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYN 445
           ++G   HG   +AIELF++M   G++       AVLTACSH GLVDE  KYF SM  D+ 
Sbjct: 413 IMGCALHGQAPDAIELFEQMETEGIK-------AVLTACSHGGLVDEAWKYFNSMTRDFG 465

Query: 446 VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAA 505
           + P  E Y  V DLLGRAGR++EAY+ I  M   P  S+W  LL AC+ H+  ++ +  A
Sbjct: 466 IAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHKNIDMAEKVA 525

Query: 506 LRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGF 565
            R+L++ PN  G YI+L+NIY+A  +W+E AK+R  MR +G +K    SWIEV++KV  F
Sbjct: 526 NRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAF 585

Query: 566 IANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           +A D+     + +   +E+L+  M +  Y PD   + HD+E E
Sbjct: 586 MAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEE 628



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/414 (26%), Positives = 206/414 (49%), Gaps = 36/414 (8%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM 174
           + ++L+    +KS S A  +H   +K     S+   + L+ +Y+   +  D+ RL FN +
Sbjct: 9   VKALLRNPLSIKSRSQAQQLHAQVLKFQ-ASSLCNLSLLLSIYSHINLLHDSLRL-FNTI 66

Query: 175 KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGK 234
            +   ++W ++I  Y   G  +  LG F  ML  G+  +   F   +++CA    ++ G+
Sbjct: 67  HFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGE 126

Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSD-------ANQYFDEMT----------- 276
            +H  +I+ G   +L   N++++MY +   L +       A + FDEMT           
Sbjct: 127 SLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSV 186

Query: 277 --------------EKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSII 321
                         EKDL++WNTIIAG  ++G   E L M  +M      P+ FT +S++
Sbjct: 187 LSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVL 246

Query: 322 AACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLV 381
              A    +S G+++H   +R+GLD ++ +A++LIDMYAKC  ++DS ++F+ +++RD +
Sbjct: 247 PLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGI 306

Query: 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441
           +W S++ G   +G   E +  F +M+ + ++P    F +++ AC+H   +  G +    +
Sbjct: 307 SWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYI 366

Query: 442 NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
                + N  I   +VD+  + G ++ A ++   M  + D   W  ++  C  H
Sbjct: 367 TRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLR-DMVSWTAMIMGCALH 419



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 99/183 (54%), Gaps = 8/183 (4%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A++LI  Y     + ++  +F  + ERD +SW  +IAG       ++    F +M+  +
Sbjct: 276 VASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAK 335

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + P +++ SS++ AC  + +L     +HG   + G + +I++ +SL+D+YA C  ++  A
Sbjct: 336 IKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCG-NIRTA 394

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           + +F+ M+ ++ VSWT +I G A  G     + +F++M  EG++         + AC+  
Sbjct: 395 KQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKA-------VLTACSHG 447

Query: 228 GWV 230
           G V
Sbjct: 448 GLV 450



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 152/346 (43%), Gaps = 75/346 (21%)

Query: 204 EMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFD 263
           E L++ +  NP   SI  R+ A        + +HA V+K    S+L  ++ +L +Y   +
Sbjct: 6   EALVKALLRNP--LSIKSRSQA--------QQLHAQVLKFQ-ASSLCNLSLLLSIYSHIN 54

Query: 264 CLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIA 322
            L D+ + F+ +     + W ++I  Y   G   + L  F  M +    P+   F S++ 
Sbjct: 55  LLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLK 114

Query: 323 ACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDS-------------- 368
           +CA L  L+ G+ +H  I+R GLD +L   NAL++MY+K   + +S              
Sbjct: 115 SCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEM 174

Query: 369 ------------------QKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
                             +KIF  M ++DLV+W +++ G   +G  +E + +  EM  + 
Sbjct: 175 TERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGAN 234

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC--------------- 455
           ++PD     +VL       L+ E +         +++  KEI+GC               
Sbjct: 235 LKPDSFTLSSVLP------LIAENV---------DISRGKEIHGCSIRQGLDADIYVASS 279

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLG 501
           ++D+  +  RV ++  +  ++  + D   W  ++  C ++ L + G
Sbjct: 280 LIDMYAKCTRVADSCRVF-TLLTERDGISWNSIIAGCVQNGLFDEG 324


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/536 (37%), Positives = 313/536 (58%), Gaps = 4/536 (0%)

Query: 64  EARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACK 123
           +AR +FDEM  RD VS+  MI GY       ++  +F+E + ++  P+  T+SSVL+AC 
Sbjct: 260 DARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENL-DQFKPDLLTVSSVLRACG 318

Query: 124 GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWT 183
            ++ LS A  ++   +K G      V N L+DVYA C   M  AR VFN M+ K+ VSW 
Sbjct: 319 HLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCG-DMITARDVFNSMECKDTVSWN 377

Query: 184 TLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH 243
           ++I+GY  SG+    + +FK M++   + +  ++ + +        + FGK +H+  IK 
Sbjct: 378 SIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKS 437

Query: 244 GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMF 302
           G   +L V N+++DMY +   + D+ + F  M   D +TWNT+I+   + G  +  L + 
Sbjct: 438 GICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVT 497

Query: 303 SKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362
           ++M+     P+  TF   +  CA+LAA   G+++H  ++R G +  L + NALI+MY+KC
Sbjct: 498 TQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKC 557

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
           G + +S ++F  MS RD+VTWT M+  YG +G G++A+E F +M KSG+ PD +VF+A++
Sbjct: 558 GCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAII 617

Query: 423 TACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481
            ACSH+GLVDEGL  F+ M   Y ++P  E Y CVVDLL R+ ++ +A E I++MP KPD
Sbjct: 618 YACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPD 677

Query: 482 ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKI 541
            S+W  +L AC+        +  + R+++L P+  G  I+ SN YAA  KW++ +  RK 
Sbjct: 678 ASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKS 737

Query: 542 MRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPD 597
           ++     K  G SWIEV   V  F + D     ++ +Y  LE+L   M +  Y PD
Sbjct: 738 LKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIPD 793



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 132/441 (29%), Positives = 228/441 (51%), Gaps = 4/441 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+  Y   GL+  AR +FDEMP RD+VSW  +I+GY+S   + +A  ++ E+  + + P+
Sbjct: 147 LVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPD 206

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
           +FT+SSVL A   +  +     +HG A+K G+   + V N L+ +Y       D AR VF
Sbjct: 207 SFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTD-ARRVF 265

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           ++M  ++ VS+ T+I GY         + +F E  L+  + +  + S  +RAC     +S
Sbjct: 266 DEMDVRDSVSYNTMICGYLKLEMVEESVRMFLEN-LDQFKPDLLTVSSVLRACGHLRDLS 324

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
             K I+  ++K GF     V N ++D+Y +   +  A   F+ M  KD ++WN+II+GY 
Sbjct: 325 LAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYI 384

Query: 292 KSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           +SG   E + +F  M       +  T+  +I+    LA L  G+ +H+  ++ G+  +L+
Sbjct: 385 QSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLS 444

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           ++NALIDMYAKCG + DS KIFS M   D VTW +++      G     +++  +M KS 
Sbjct: 445 VSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSE 504

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470
           V PD   F+  L  C+       G +    +  +      +I   ++++  + G ++ + 
Sbjct: 505 VVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSS 564

Query: 471 ELIKSMPFKPDESVWGPLLGA 491
            + + M  + D   W  ++ A
Sbjct: 565 RVFERMS-RRDVVTWTGMIYA 584



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/425 (27%), Positives = 224/425 (52%), Gaps = 12/425 (2%)

Query: 73  PERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAA 132
           P ++V  W  +I  ++      +A   + ++  ++V+P+ +T  SV+KAC G+       
Sbjct: 67  PAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGD 126

Query: 133 LVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHS 192
           LV+   +  G E  ++V N+L+D+Y+   + +  AR VF++M  ++ VSW +LI+GY+  
Sbjct: 127 LVYEQILDMGFESDLFVGNALVDMYSRMGL-LTRARQVFDEMPVRDLVSWNSLISGYSSH 185

Query: 193 GNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVM 252
           G     L ++ E+    +  + ++ S  + A  +   V  G+ +H   +K G  S + V 
Sbjct: 186 GYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVN 245

Query: 253 NSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEK-SGSSECLNMFSKMKSERFS 311
           N ++ MY +F   +DA + FDEM  +D +++NT+I GY K     E + MF +   ++F 
Sbjct: 246 NGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLE-NLDQFK 304

Query: 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKI 371
           P+  T +S++ AC  L  LS  + ++  +++ G      + N LID+YAKCG++  ++ +
Sbjct: 305 PDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDV 364

Query: 372 FSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLV 431
           F+ M  +D V+W S++ GY   G   EA++LF  M+    + D I ++ +++  +   L 
Sbjct: 365 FNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTR--LA 422

Query: 432 DEGLKYFKSMNDYNVNP----NKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGP 487
           D  LK+ K ++   +      +  +   ++D+  + G V ++ ++  SM    D   W  
Sbjct: 423 D--LKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMG-TGDTVTWNT 479

Query: 488 LLGAC 492
           ++ AC
Sbjct: 480 VISAC 484



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 181/371 (48%), Gaps = 3/371 (0%)

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179
           +A     +L+    +H + I  GL+ S +    L+D Y+       +  +       KN 
Sbjct: 12  RALSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNV 71

Query: 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAA 239
             W ++I  ++ +G     L  + ++    V  + Y+F   ++ACA       G L++  
Sbjct: 72  YLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQ 131

Query: 240 VIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSEC 298
           ++  GF S+L V N+++DMY R   L+ A Q FDEM  +DL++WN++I+GY   G   E 
Sbjct: 132 ILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEA 191

Query: 299 LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDM 358
           L ++ ++K+    P+ FT +S++ A   L  +  GQ +H   ++ G++  + + N L+ M
Sbjct: 192 LEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAM 251

Query: 359 YAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVF 418
           Y K    +D++++F EM  RD V++ +M+ GY      +E++ +F E +    +PD +  
Sbjct: 252 YLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQ-FKPDLLTV 310

Query: 419 MAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPF 478
            +VL AC H   +      +  M          +   ++D+  + G +  A ++  SM  
Sbjct: 311 SSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMEC 370

Query: 479 KPDESVWGPLL 489
           K D   W  ++
Sbjct: 371 K-DTVSWNSII 380


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 213/632 (33%), Positives = 352/632 (55%), Gaps = 70/632 (11%)

Query: 46  SILATNLIKS-YFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
           S+ + N+I S Y   G +EEA  +F+EMPE D VSWT MI GY        A  +F EMV
Sbjct: 78  SVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMV 137

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
            ++V P  FTL++VL +C  ++ L     VH   +K GL   I V NSL+++YA     +
Sbjct: 138 SDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPV 197

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSG------------------------NGYG--- 197
             A++VF+ MK K+  SW T+I+ +  SG                        +GY    
Sbjct: 198 -TAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHG 256

Query: 198 ----GLGVFKEMLLEGV-EMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFG------ 246
                L +F +ML++   + + ++ + A+ ACA+   +  GK IHA +I+  F       
Sbjct: 257 FDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVG 316

Query: 247 -------------------------SNLPVM--NSILDMYCRFDCLSDANQYFDEMTEKD 279
                                    SNL V+   ++LD Y +   ++ A + FD +  +D
Sbjct: 317 NALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRD 376

Query: 280 LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           ++ W  +I GY ++G + + + +F  M  E   PN +T  ++++  ++LA+L  G+Q+HA
Sbjct: 377 VVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHA 436

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGK 397
              R G   +++++NALI MYAK G+I+D++ +F+ +   RD +TWTSM+I    HG G+
Sbjct: 437 SATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGE 496

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCV 456
           EA+ LF+ M+++G++PD I ++ VL+AC+H GLV++G  Y+  M N + + P    Y C+
Sbjct: 497 EALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACM 556

Query: 457 VDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMM 516
           +DL GRAG ++EA+  I++MP +PD   WG LL +CK H+   L ++AA R+L ++P   
Sbjct: 557 IDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENS 616

Query: 517 GTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQ 576
           G Y  L+N+Y+A G+WE  A  RK M+  G KK+ G SW+++++KV  F  +D +     
Sbjct: 617 GAYSALANVYSACGQWENAANIRKSMKDKGVKKDQGFSWVQIKNKVHIFGVDDGLHPQRD 676

Query: 577 YVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
            +Y ++  + + + +  + PD + ++HDLE E
Sbjct: 677 AIYEMMAKIWKEIKKMGFVPDTESVLHDLEEE 708



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 153/310 (49%), Gaps = 72/310 (23%)

Query: 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEK 292
           GK IHA +IK G    + +MN++++ Y +   + DA++ FDEM  K + +WN I++GY K
Sbjct: 32  GKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAK 91

Query: 293 SGSSE--------------------------------CLNMFSKMKSERFSPNCFTFTSI 320
            G  E                                 + MF +M S+   P  FT T++
Sbjct: 92  GGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNV 151

Query: 321 IAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGN---------------- 364
           +A+CA +  L  G++VH+ +V+ GL   +++AN+L++MYAK G+                
Sbjct: 152 LASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKST 211

Query: 365 ---------------ISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV-K 408
                          +  +Q  F +M +RD+V+W +M+ GY  HG  +EA+++F +M+  
Sbjct: 212 SSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMD 271

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCV----VDLLGRAG 464
           S  +PD+    + L+AC++     E LK  K ++ + +    + +G V    + +  ++G
Sbjct: 272 SSSKPDKFTLASALSACANL----ENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSG 327

Query: 465 RVKEAYELIK 474
            V+ A ++I+
Sbjct: 328 GVEIAQKIIE 337



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 4/134 (2%)

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           +TS +           G+ +HA I++ GL   + L N L++ YAK G I D+ ++F EM 
Sbjct: 16  YTSFLQRSLKFKDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMP 75

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
            + + +W  ++ GY   G  +EA  +F+EM +    PD + + A++   +  G  +  + 
Sbjct: 76  VKSVFSWNIILSGYAKGGRLEEAHRVFEEMPE----PDSVSWTAMIVGYNQMGQFENAIG 131

Query: 437 YFKSMNDYNVNPNK 450
            F+ M   +V P +
Sbjct: 132 MFREMVSDDVPPTQ 145


>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 697

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/548 (36%), Positives = 312/548 (56%), Gaps = 4/548 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++ ++L+  Y      E A  LFDEMP++DV  W  +I+ Y       +A   F  M R 
Sbjct: 142 VVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGKFEEALRYFGMMRRF 201

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
              P++ T+++ + +C  +  L     +H   +  G     +V  +L+D+Y  C   ++ 
Sbjct: 202 GFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDSFVSAALVDMYGKCG-QLEM 260

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  VF  M  K  V+W ++I GY   G+G   + +FK M  EGV+    + +  + AC+ 
Sbjct: 261 AIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQ 320

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
           +  +  GK +H  +I++    ++ + +S++D+Y +   +  A   F  M +   ++WN +
Sbjct: 321 SAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVM 380

Query: 287 IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+GY   G   + L +F +M      P+  TFTS++AAC+ LAAL  G+++H  IV R L
Sbjct: 381 ISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGREIHNLIVERNL 440

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             N  +  AL+DMYAKCG + ++  +F  + +RDLV+WTSM+  YG+HG   EA+ELF E
Sbjct: 441 GNNEVVMGALLDMYAKCGAVEEAFGVFKCLPERDLVSWTSMITAYGSHGRVYEALELFAE 500

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAG 464
           M++S V+PDR+ F+A+L+ACSHAGLVD+GL +F  M N Y + P  E Y C++ LLGRAG
Sbjct: 501 MLQSNVKPDRVTFLAILSACSHAGLVDDGLYHFNQMINVYGIIPRIEHYSCLITLLGRAG 560

Query: 465 RVKEAYELIKSMP-FKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           R+ EAYE+++S P    D  +   L  AC+ H+  +LG   A  ++D  P+   TYIILS
Sbjct: 561 RLHEAYEILQSNPEISDDFQLLSTLFSACRLHKNLDLGVEIAENLIDKDPDDSSTYIILS 620

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           N+YA+ GKW+E    R  M+ +G KK  G SWIE+ +K+  F   D    H + +  +L 
Sbjct: 621 NMYASFGKWDEVRMVRSKMKDLGLKKNPGCSWIEINEKIVPFFVEDNSHYHLEGIGNILS 680

Query: 584 MLIRHMNE 591
            L  HM +
Sbjct: 681 YLTSHMED 688



 Score =  221 bits (564), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 155/517 (29%), Positives = 266/517 (51%), Gaps = 11/517 (2%)

Query: 16  HKIPPIIKQSL--QSVKKSSI--QSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDE 71
            K+ P+++ S+  +S+K+  +  Q    L  +    +  NLI  Y    L + A+ +FD 
Sbjct: 4   RKLIPLLRASVNSKSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVFDV 63

Query: 72  MPERDVVSW-TVMIAGYTSFNCHNQAWTVFVE-MVRNEVNPNAFTLSSVLKACKGMKSLS 129
           +     +S    ++AGYT    +++A  +F + M    + P+++T  SVLKAC G++ + 
Sbjct: 64  IENPFEISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRRVV 123

Query: 130 NAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGY 189
              ++H   +KEGL   I V +SL+ +YA C    + A  +F++M  K+   W T+I+ Y
Sbjct: 124 LGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCN-EFECAVKLFDEMPDKDVACWNTVISCY 182

Query: 190 AHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNL 249
             SG     L  F  M   G E +  + + A+ +CA    +  G+ IH  ++  GF  + 
Sbjct: 183 YQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDS 242

Query: 250 PVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSE 308
            V  +++DMY +   L  A + F++M  K ++ WN++I GY   G    C+ +F +M SE
Sbjct: 243 FVSAALVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSE 302

Query: 309 RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDS 368
              P   T TS + AC+  A L  G+ VH  I+R  +  ++ L ++L+D+Y KCG +  +
Sbjct: 303 GVKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESA 362

Query: 369 QKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHA 428
           + IF  M     V+W  M+ GY   G   +A+ LF EM KS V PD I F +VL ACS  
Sbjct: 363 ETIFKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQL 422

Query: 429 GLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPL 488
             +++G +    + + N+  N+ + G ++D+  + G V+EA+ + K +P + D   W  +
Sbjct: 423 AALEKGREIHNLIVERNLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLP-ERDLVSWTSM 481

Query: 489 LGACKEH--RLPNLGKLAALRVLDLKPNMMGTYIILS 523
           + A   H      L   A +   ++KP+ +    ILS
Sbjct: 482 ITAYGSHGRVYEALELFAEMLQSNVKPDRVTFLAILS 518



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 113/370 (30%), Positives = 196/370 (52%), Gaps = 4/370 (1%)

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           +A  L  +L+A    KSL    ++H   +  GL+  +YV  +L+ +Y +C +  D A+ V
Sbjct: 2   DARKLIPLLRASVNSKSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNL-FDYAKNV 60

Query: 171 FNDMKWKNDVSWTT-LITGYAHSGNGYGGLGVF-KEMLLEGVEMNPYSFSIAVRACASTG 228
           F+ ++   ++S    L+ GY  +      LG+F K M    ++ + Y++   ++AC    
Sbjct: 61  FDVIENPFEISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLR 120

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            V  G++IH  ++K G   ++ V +S++ MY + +    A + FDEM +KD+  WNT+I+
Sbjct: 121 RVVLGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVIS 180

Query: 289 GYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
            Y +SG   E L  F  M+   F P+  T T+ I++CA L  L  G+++H  +V  G   
Sbjct: 181 CYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRM 240

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           +  ++ AL+DMY KCG +  + ++F +M ++ +V W SM+ GYG  G G   I+LF  M 
Sbjct: 241 DSFVSAALVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMY 300

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
             GV+P      + L ACS +  + EG      +    + P+  +   ++DL  + G+V+
Sbjct: 301 SEGVKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVE 360

Query: 468 EAYELIKSMP 477
            A  + K MP
Sbjct: 361 SAETIFKLMP 370


>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/580 (33%), Positives = 325/580 (56%), Gaps = 32/580 (5%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
            I+   +   I+ AR +FD++P  D       I  Y+  + +N+A   FV M +N V   
Sbjct: 36  FIRRLLNASFIQYARQVFDQIPHPDQGVHCSFITAYSRLSLNNEALRTFVSMHQNNVRIV 95

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA------------- 158
            FT+  + K+C  + ++     VH + I+ G   S++ +N+L++ YA             
Sbjct: 96  CFTIPPIFKSCASLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFD 155

Query: 159 ----------TCCISMDN-------ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGV 201
                      C IS  +       AR +F+ M+ ++ VSW  +I+ YA +G+ + G  +
Sbjct: 156 GILVKDTIAYNCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWII 215

Query: 202 FKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR 261
           F+ M  E  E N  + +  +  CA  G +  G  I         GSN+ V  ++L+MY +
Sbjct: 216 FQRMQDEMCEPNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVK 275

Query: 262 FDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSI 320
              + D    FD M  +D++TW+ +IAGY ++G S+E L +F  MKS +  PN  T  S+
Sbjct: 276 CGAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSV 335

Query: 321 IAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDL 380
           ++ACA L ++  G+++ + +  RGL  N+ +A+AL+ MY+KCGNI  +++IF ++  RD 
Sbjct: 336 LSACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDN 395

Query: 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS 440
           VTW SM++G   +G  ++AI L++ M +  V+P+ I F+ ++TAC+HAG V+ GL++F+S
Sbjct: 396 VTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAGHVELGLEFFRS 455

Query: 441 M-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN 499
           M +D+N++PN E + C+VDL  R+GR+ +AYE I  M  +P+  +WG LL A + H    
Sbjct: 456 MRSDHNISPNIEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLLSASRIHLNVE 515

Query: 500 LGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVR 559
           L +LA  ++L+L+P+  G Y+ILSNIYA+ G+W+E  K RK+M+    +K    SW+EV 
Sbjct: 516 LAELAGKKLLELEPDNSGNYVILSNIYASAGRWQEALKVRKLMKDKRVQKAAAYSWVEVE 575

Query: 560 DKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDID 599
           D+V  F+  D     +  VY  ++ L        YE D +
Sbjct: 576 DRVHKFLVGDTSHPRSDEVYSTIDGLALLSTWVGYELDFE 615



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 127/245 (51%), Gaps = 3/245 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I++T +++ Y   G +++ R +FD M  RDVV+W+ MIAGY      N+A  +F  M   
Sbjct: 264 IVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSA 323

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           ++ PN  TL SVL AC  + S+     +       GL  ++YV ++L+ +Y+ C  ++  
Sbjct: 324 QIKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCG-NIIK 382

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR +F+ +  +++V+W ++I G A +G     + ++  M    V+ N  +F   + AC  
Sbjct: 383 ARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTH 442

Query: 227 TGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLITWN 284
            G V  G +   +    H    N+     I+D++CR   L DA ++   M  E +++ W 
Sbjct: 443 AGHVELGLEFFRSMRSDHNISPNIEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWG 502

Query: 285 TIIAG 289
           T+++ 
Sbjct: 503 TLLSA 507


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/536 (36%), Positives = 310/536 (57%), Gaps = 23/536 (4%)

Query: 63  EEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKAC 122
           E A  LFD++ +RDV+SW  MI+GY S     +   ++ +M+   ++ +  T+ SVL  C
Sbjct: 202 ESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGC 261

Query: 123 KGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSW 182
               +LS    VH +AIK   E  I   N+L+D+Y+ C   +D A  VF  M  +N VSW
Sbjct: 262 ANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCG-DLDGALRVFEKMGERNVVSW 320

Query: 183 TTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIK 242
           T++I GY   G   G + + ++M  EGV+++  + +  + ACA +G +  GK +H  +  
Sbjct: 321 TSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKA 380

Query: 243 HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMF 302
           +   SNL V N+++DMY +   +  AN  F  M  KD+I+WNT++               
Sbjct: 381 NNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVG-------------- 426

Query: 303 SKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362
                    P+  T   I+ ACA+L+AL  G+++H  I+R G   +  +ANAL+D+Y KC
Sbjct: 427 ------ELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKC 480

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
           G +  ++ +F  +  +DLV+WT M+ GYG HG+G EAI  F+EM  +G+ PD + F+++L
Sbjct: 481 GVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISIL 540

Query: 423 TACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481
            ACSH+GL+++G ++F  M ND+N+ P  E Y C+VDLL R G + +AY+ I+++P  PD
Sbjct: 541 YACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPD 600

Query: 482 ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKI 541
            ++WG LL  C+ +    L +  A RV +L+P   G Y++L+NIYA   K EE  + R+ 
Sbjct: 601 ATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKREEVKRMREK 660

Query: 542 MRGMGSKKEVGMSWIEVRDKVCGFIA-NDKMGSHTQYVYGVLEMLIRHMNETAYEP 596
           +   G +K  G SWIE++ +V  F++ N+    H++ +  +L+ + R M E  Y P
Sbjct: 661 IGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFP 716



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 101/358 (28%), Positives = 175/358 (48%), Gaps = 51/358 (14%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
            +  L+  Y   G ++ A  +F++M ER+VVSWT MIAGYT     + A  +  +M +  
Sbjct: 288 FSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEG 347

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V  +   ++S+L AC    SL N   VH       +  +++V N+LMD+YA C  SM+ A
Sbjct: 348 VKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCG-SMEGA 406

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA--VRACA 225
             VF+ M  K+ +SW T++                        E+ P S ++A  + ACA
Sbjct: 407 NSVFSTMVVKDIISWNTMVG-----------------------ELKPDSRTMACILPACA 443

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           S   +  GK IH  ++++G+ S+  V N+++D+Y +   L  A   FD +  KDL++W  
Sbjct: 444 SLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTV 503

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +IAGY   G  +E +  F++M+     P+  +F SI+ AC+           H+G++ +G
Sbjct: 504 MIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACS-----------HSGLLEQG 552

Query: 345 ------------LDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIG 389
                       ++  L     ++D+ ++ GN+S + K    +    D   W +++ G
Sbjct: 553 WRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCG 610



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 156/358 (43%), Gaps = 67/358 (18%)

Query: 211 EMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQ 270
           E+   ++   ++ CA    ++ GK +H+ +  +  G +  +   ++  Y     L +  +
Sbjct: 96  ELETKTYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRR 155

Query: 271 YFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKM------------KSERFSPNC--- 314
            FD M +K++  WN +++ Y K G   E + +F  M             SE F   C   
Sbjct: 156 VFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRD 215

Query: 315 ------------------------------------FTFTSIIAACATLAALSCGQQVHA 338
                                                T  S++  CA    LS G+ VH+
Sbjct: 216 VISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHS 275

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
             ++   +  +  +N L+DMY+KCG++  + ++F +M +R++V+WTSM+ GY   G    
Sbjct: 276 LAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDG 335

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDY----NVNPNKEIYG 454
           AI L  +M K GV+ D +   ++L AC+ +G +D G    K ++DY    N+  N  +  
Sbjct: 336 AIILLQQMEKEGVKLDVVAITSILHACARSGSLDNG----KDVHDYIKANNMASNLFVCN 391

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR------LPNLGKLAAL 506
            ++D+  + G ++ A  +  +M  K D   W  ++G  K         LP    L+AL
Sbjct: 392 ALMDMYAKCGSMEGANSVFSTMVVK-DIISWNTMVGELKPDSRTMACILPACASLSAL 448


>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
          Length = 676

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/519 (38%), Positives = 313/519 (60%), Gaps = 5/519 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + +  +L+  Y + G +E AR +FD M ER +VSW  MI GY    C  +A  VF  M+ 
Sbjct: 158 AFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMIG 217

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             + P+  T+ SVL  C  +K L     VH +   + L   I V NSL+D+YA C  +MD
Sbjct: 218 KGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCG-NMD 276

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A+++F +M  ++ VSWTT++ GY  +G+    L + + M  E V+ N  + +  + ACA
Sbjct: 277 EAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACA 336

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           S   +  G+ +H   I+    S + V  +++DMY + + ++ + + F + +++    WN 
Sbjct: 337 SLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKXSKQRTAPWNA 396

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           II+G   +G S + + +F +M  E   PN  T  S++ A A L  L   + +H  ++R G
Sbjct: 397 IISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSG 456

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEM--SDRDLVTWTSMMIGYGAHGHGKEAIEL 402
               + +A  LID+Y+KCG++  +  IF+ +   D+D++TW++++ GYG HGHG+ AI L
Sbjct: 457 FLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISL 516

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLG 461
           FD+MV+SGV+P+ I F ++L ACSHAGLVDEGL  FK M  D  ++   + Y CV+DLLG
Sbjct: 517 FDQMVQSGVKPNEITFTSILHACSHAGLVDEGLGLFKFMLEDNQMSLRTDHYTCVIDLLG 576

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           RAGR++EAYELI++M F+P+ +VWG LLG+C  H    LG++AA  + +L+P   G Y++
Sbjct: 577 RAGRLEEAYELIRTMAFRPNHAVWGALLGSCVIHENVELGEVAAKWLFELEPGNTGNYVL 636

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRD 560
           L+NIY+A G+W +    R +M  +G +K    S IEVR+
Sbjct: 637 LANIYSAVGRWRDAEHVRLMMNNIGLRKTPAHSLIEVRN 675



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 137/455 (30%), Positives = 238/455 (52%), Gaps = 12/455 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L ++L  +Y   G    AR LFDE+    + SW  MI  YT+      A  +FV+M+ + 
Sbjct: 58  LLSSLAAAYAMCGCAPHARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASG 117

Query: 108 VN-PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
              P+ +T   V+KAC         AL+H   +  G +   +V+NSLM +Y  C   M+ 
Sbjct: 118 RRWPDNYTYPFVIKACGDYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCG-EMEV 176

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR VF+ M+ +  VSW T+I GY  +G     L VF  M+ +G+E +  +    +  C+ 
Sbjct: 177 ARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSY 236

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  G+ +HA V     G ++ V NS+LDMY +   + +A   F EM ++D+++W T+
Sbjct: 237 LKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTM 296

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           + GY  +G +   L +   M+ E   PN  T  S+++ACA+L +L  G+ +H   +R+ L
Sbjct: 297 MNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKL 356

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           +  + +  ALIDMYAKC N++ S ++FS+ S +    W +++ G   +G  ++AIELF +
Sbjct: 357 ESEVIVETALIDMYAKCNNVNLSFRVFSKXSKQRTAPWNAIISGCIHNGLSRKAIELFKQ 416

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN----PNKEIYGCVVDLLG 461
           M+   V P+     ++L A  +A L D  L+  ++M+ Y +        E+   ++D+  
Sbjct: 417 MLMEAVDPNDATLNSLLPA--YAFLTD--LQQARNMHGYLIRSGFLSRIEVATILIDIYS 472

Query: 462 RAGRVKEAYELIKSMPFKPDESV-WGPLLGACKEH 495
           + G ++ A+ +   +P K  + + W  ++     H
Sbjct: 473 KCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMH 507



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 122/386 (31%), Positives = 203/386 (52%), Gaps = 15/386 (3%)

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVEN---SLMDVYATCCISMDNARLVFN 172
            S+L+ C   KS+ N   +H   I  GL  S Y  +   SL   YA C  +  +AR +F+
Sbjct: 22  QSLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMCGCA-PHARKLFD 80

Query: 173 DMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEM-NPYSFSIAVRACASTGWVS 231
           +++  +  SW  +I  Y +SG  Y  LG+F +ML  G    + Y++   ++AC       
Sbjct: 81  ELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPE 140

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            G LIHA  +  GF S+  V NS++ MY     +  A + FD M E+ L++WNT+I GY 
Sbjct: 141 MGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYF 200

Query: 292 KSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           K+G   E L +F  M  +   P+C T  S++  C+ L  L  G++VHA +  + L  +++
Sbjct: 201 KNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDIS 260

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           + N+L+DMYAKCGN+ ++Q IF EM  RD+V+WT+MM GY  +G  + A+ L   M    
Sbjct: 261 VWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFES 320

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE----IYGCVVDLLGRAGRV 466
           V+P+ +   +VL+AC+        LK+ + ++ + +    E    +   ++D+  +   V
Sbjct: 321 VKPNFVTLASVLSACASL----YSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNV 376

Query: 467 KEAYELIKSMPFKPDESVWGPLLGAC 492
             ++ +  S   K   + W  ++  C
Sbjct: 377 NLSFRVF-SKXSKQRTAPWNAIISGC 401


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/566 (36%), Positives = 323/566 (57%), Gaps = 8/566 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV-R 105
            ++T LI  Y        A  +F +MP RDVV+W  M+AGY +   ++ A    ++M  R
Sbjct: 135 FVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDR 194

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGL---EGSIYVENSLMDVYATCCI 162
             + PNA TL S+L       +L     VH   ++  L   E  + +  +L+D+YA C  
Sbjct: 195 GGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKH 254

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGV-EMNPYSFSIAV 221
            +   R VF+ M  +N+V+W+ LI G+           +FK+ML+EG+  ++  S + A+
Sbjct: 255 LVYACR-VFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASAL 313

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
           R CAS   +  G  +HA + K G  ++L   NS+L MY +   +++A   FDE+  KD I
Sbjct: 314 RVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTI 373

Query: 282 TWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           ++  +++GY ++G +E    +F KM++    P+  T  S+I AC+ LAAL  G+  H  +
Sbjct: 374 SYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSV 433

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           + RGL    ++ N+LIDMYAKCG I  S+++F +M  RD+V+W +M+ GYG HG GKEA 
Sbjct: 434 IIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEAT 493

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDL 459
            LF  M   G  PD + F+ ++ ACSH+GLV EG  +F +M + Y + P  E Y C+VDL
Sbjct: 494 TLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDL 553

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
           L R G + EAY+ I+SMP K D  VWG LLGAC+ H+  +LGK  +  +  L P   G +
Sbjct: 554 LARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQKLGPEGTGNF 613

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVY 579
           ++LSNI++A G+++E A+ R I +  G KK  G SWIE+   +  F+  D+    +  +Y
Sbjct: 614 VLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGCSWIEINGSLHAFVGGDQSHPCSPDIY 673

Query: 580 GVLEMLIRHMNETAYEPDIDCLIHDL 605
             L+ ++  + +  Y+ D   ++ DL
Sbjct: 674 HELDNILIDIKKLGYQADTSFVLQDL 699



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 123/469 (26%), Positives = 222/469 (47%), Gaps = 17/469 (3%)

Query: 53  IKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNA 112
           ++ +   G +  AR +FD +P  D  ++  +I  Y+     + A  ++  M+   V PN 
Sbjct: 40  LEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNK 99

Query: 113 FTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFN 172
           +T   VLKAC  +  L     +H  A   GL   ++V  +L+D+Y  C      A  VF 
Sbjct: 100 YTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCA-RFGPAANVFA 158

Query: 173 DMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAVRACASTGWVS 231
            M  ++ V+W  ++ GYA+ G  +  +    +M    G+  N  +    +   A  G + 
Sbjct: 159 KMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALF 218

Query: 232 FGKLIHAAVIKHGFGSN---LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            G  +HA  ++     N   + +  ++LDMY +   L  A + F  MT ++ +TW+ +I 
Sbjct: 219 QGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIG 278

Query: 289 GYEKSGS-SECLNMFSKMKSERFSPNCF----TFTSIIAACATLAALSCGQQVHAGIVRR 343
           G+      +E  N+F  M  E     CF    +  S +  CA+LA L  G Q+HA + + 
Sbjct: 279 GFVLCDRMTEAFNLFKDMLVEGM---CFLSATSVASALRVCASLADLRMGTQLHALLAKS 335

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G+  +L   N+L+ MYAK G I+++  +F E++ +D +++ +++ GY  +G  +EA  +F
Sbjct: 336 GIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVF 395

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
            +M    V+PD    ++++ ACSH   +  G     S+    +     I   ++D+  + 
Sbjct: 396 KKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKC 455

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLK 512
           GR+  + ++   MP + D   W  ++     H    LGK A    L +K
Sbjct: 456 GRIDLSRQVFDKMPAR-DIVSWNTMIAGYGIH---GLGKEATTLFLSMK 500


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/547 (36%), Positives = 315/547 (57%), Gaps = 26/547 (4%)

Query: 87  YTSFNCHNQ-AWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEG 145
           ++ F  H + A   +  M + ++  ++F + SVLKAC  +        +HG ++K GL  
Sbjct: 83  FSPFESHPRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVS 142

Query: 146 SIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYG-------- 197
            ++V N+LM +Y+ C  S+ +ARL+F+ M  ++ VSW+T+I  Y     G+         
Sbjct: 143 DVFVVNALMQMYSECG-SLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWT 201

Query: 198 --------------GLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH 243
                         G  +F  M+ E V  N  +    + +C   G V  GK +HA ++++
Sbjct: 202 AMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRN 261

Query: 244 GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMF 302
           GFG +L +  +++DMY +   +  A   FD M  KD++TW  +I+ Y ++   +    +F
Sbjct: 262 GFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLF 321

Query: 303 SKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362
            +M+     PN  T  S+++ CA   AL  G+  HA I ++G++ ++ L  ALIDMYAKC
Sbjct: 322 VQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKC 381

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
           G+IS +Q++FSE  DRD+ TW  MM GYG HG+G++A++LF EM   GV+P+ I F+  L
Sbjct: 382 GDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGAL 441

Query: 423 TACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481
            ACSHAGLV EG   F+ M +D+ + P  E YGC+VDLLGRAG + EAY++I+SMP  P+
Sbjct: 442 HACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPN 501

Query: 482 ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKI 541
            ++WG +L ACK H+  N+G+LAA  +L L+P   G  +++SNIYAA  +W + A  RK 
Sbjct: 502 IAIWGAMLAACKIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKA 561

Query: 542 MRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCL 601
           ++  G KKE GMS IEV   V  F   D      + +  +L  + + + E  Y PD   +
Sbjct: 562 VKDTGIKKEPGMSSIEVNGLVHDFKMGDTAHPLIEKISEMLAEMSKKLKEAGYLPDTSVV 621

Query: 602 IHDLEGE 608
           +H+++ E
Sbjct: 622 LHNIDEE 628



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 177/367 (48%), Gaps = 26/367 (7%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSW----------------------TVMIAGYTS 89
           L++ Y + G +  AR LFD+M ERDVVSW                      T MIAGY  
Sbjct: 150 LMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIR 209

Query: 90  FNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYV 149
            N   +   +FV M+   V PN  T+ S++ +C  + ++     +H   ++ G   S+ +
Sbjct: 210 CNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLAL 269

Query: 150 ENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG 209
             +L+D+Y  C   + +AR +F+ MK K+ ++WT +I+ YA +        +F +M   G
Sbjct: 270 ATALVDMYGKCG-EIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNG 328

Query: 210 VEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDAN 269
           V  N  +    +  CA  G +  GK  HA + K G   ++ +  +++DMY +   +S A 
Sbjct: 329 VRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQ 388

Query: 270 QYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLA 328
           + F E  ++D+ TWN ++AGY   G  E  L +F++M++    PN  TF   + AC+   
Sbjct: 389 RLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAG 448

Query: 329 ALSCGQQVHAGIVRR-GLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSM 386
            +  G+ +   ++   GL   +     ++D+  + G + ++ K+   M    ++  W +M
Sbjct: 449 LVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAM 508

Query: 387 MIGYGAH 393
           +     H
Sbjct: 509 LAACKIH 515



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 125/245 (51%), Gaps = 5/245 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           LAT L+  Y   G I  AR +FD M  +DV++WT MI+ Y   NC + A+ +FV+M  N 
Sbjct: 269 LATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNG 328

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V PN  T+ S+L  C    +L      H    K+G+E  + ++ +L+D+YA C   +  A
Sbjct: 329 VRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCG-DISGA 387

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           + +F++   ++  +W  ++ GY   G G   L +F EM   GV+ N  +F  A+ AC+  
Sbjct: 388 QRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHA 447

Query: 228 GWVSFGKLIHAAVIKHGFG--SNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLITWN 284
           G V  GK +   +I H FG    +     ++D+  R   L +A +  + M    ++  W 
Sbjct: 448 GLVVEGKGLFEKMI-HDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWG 506

Query: 285 TIIAG 289
            ++A 
Sbjct: 507 AMLAA 511



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 43/88 (48%), Gaps = 6/88 (6%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           IL T LI  Y   G I  A+ LF E  +RD+ +W VM+AGY       +A  +F EM   
Sbjct: 369 ILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETL 428

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALV 134
            V PN  T    L AC      S+A LV
Sbjct: 429 GVKPNDITFIGALHAC------SHAGLV 450


>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
 gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
          Length = 863

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/553 (34%), Positives = 313/553 (56%), Gaps = 3/553 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++ T ++  Y     + +AR  F  +P   V +   M+ G        +A  +F  M+R+
Sbjct: 286 VVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRS 345

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            +  +  +LS V  AC   K       VH +AIK G +  I V N+++D+Y  C   M+ 
Sbjct: 346 SIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALME- 404

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A L+F  MK K+ VSW  +I     +G+    +  F EML  G++ + +++   ++ACA+
Sbjct: 405 AYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAA 464

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              + +G ++H  VIK G GS+  V ++++DMYC+   + +A +  D +  + +++WN I
Sbjct: 465 LRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAI 524

Query: 287 IAGYE-KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           ++G+     S E    FS+M      P+ FTF +++  CA LA +  G+Q+H  I+++ +
Sbjct: 525 LSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEM 584

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             +  +++ L+DMYAKCG++ DS  +F ++  RD V+W +M+ GY  HG G EA+ +F+ 
Sbjct: 585 LDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFER 644

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAG 464
           M K  V P+   F+AVL ACSH GL D+G +YF  M   Y + P  E + C+VD+LGR+ 
Sbjct: 645 MQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSK 704

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
             +EA + I SMPF+ D  +W  LL  CK  +   + +LAA  VL L P+    YI+LSN
Sbjct: 705 GPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDSSVYILLSN 764

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           +YA  GKW + ++ R++++    KKE G SWIEV+ ++ GF+  DK    +  +Y +L  
Sbjct: 765 VYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQSEMHGFLVGDKAHPRSGELYEMLND 824

Query: 585 LIRHMNETAYEPD 597
           LI  M  + YEPD
Sbjct: 825 LIGEMKLSGYEPD 837



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 129/433 (29%), Positives = 231/433 (53%), Gaps = 2/433 (0%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P+  ++    ++ +Y   G I  A  LFD MP+ DVVSW  +++GY       ++  +F
Sbjct: 78  MPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLF 137

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
           VEM R  V+P+  T + +LK+C  ++ LS    VH +A+K GLE  +   ++L+D+Y   
Sbjct: 138 VEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGK- 196

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
           C S+D+A   F  M  +N VSW   I G   +     GL +F EM   G+ ++  S++ A
Sbjct: 197 CRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASA 256

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
            R+CA+   ++ G+ +HA  IK+ F S+  V  +I+D+Y + + L+DA + F  +    +
Sbjct: 257 FRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTV 316

Query: 281 ITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
            T N ++ G  ++G   E + +F  M       +  + + + +ACA       GQQVH  
Sbjct: 317 ETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCL 376

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
            ++ G D ++ + NA++D+Y KC  + ++  IF  M  +D V+W +++     +GH  + 
Sbjct: 377 AIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDT 436

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL 459
           I  F+EM++ G++PD   + +VL AC+    ++ GL     +    +  +  +   VVD+
Sbjct: 437 ILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDM 496

Query: 460 LGRAGRVKEAYEL 472
             + G + EA +L
Sbjct: 497 YCKCGIIDEAQKL 509



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 110/426 (25%), Positives = 206/426 (48%), Gaps = 44/426 (10%)

Query: 108 VNPNAFTLSSVLKACK--GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           V P   T S V ++C   G ++L+     H   +  G   + +V N L+ +YA C     
Sbjct: 11  VAPARVTFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPTAFVSNCLLQMYARC-AGAA 69

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGN------------------------GYGGLGV 201
            AR VF+ M  ++ VSW T++T Y+H+G+                        GY   G+
Sbjct: 70  CARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGM 129

Query: 202 FK-------EMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNS 254
           F+       EM   GV  +  +F++ +++C++   +S G  +HA  +K G   ++   ++
Sbjct: 130 FQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSA 189

Query: 255 ILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG-YEKSGSSECLNMFSKMKSERFSPN 313
           ++DMY +   L DA  +F  M E++ ++W   IAG  +       L +F +M+      +
Sbjct: 190 LVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVS 249

Query: 314 CFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFS 373
             ++ S   +CA ++ L+ G+Q+HA  ++     +  +  A++D+YAK  +++D+++ F 
Sbjct: 250 QPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFF 309

Query: 374 EMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDE 433
            + +  + T  +MM+G    G G EA+ LF  M++S +R D +    V +AC+      +
Sbjct: 310 GLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQ 369

Query: 434 GLKY----FKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           G +      KS  D ++  N      V+DL G+   + EAY + + M  K D   W  ++
Sbjct: 370 GQQVHCLAIKSGFDVDICVNN----AVLDLYGKCKALMEAYLIFQGMKQK-DSVSWNAII 424

Query: 490 GACKEH 495
            A +++
Sbjct: 425 AALEQN 430



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 131/262 (50%), Gaps = 11/262 (4%)

Query: 29  VKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYT 88
           V KS + SD        + +A+ ++  Y   G+I+EA+ L D +  + VVSW  +++G++
Sbjct: 478 VIKSGLGSD--------AFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFS 529

Query: 89  SFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIY 148
                 +A   F EM+   + P+ FT ++VL  C  + ++     +HG  IK+ +    Y
Sbjct: 530 LNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEY 589

Query: 149 VENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE 208
           + ++L+D+YA C   M ++ LVF  ++ ++ VSW  +I GYA  G G   L +F+ M  E
Sbjct: 590 ISSTLVDMYAKCG-DMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKE 648

Query: 209 GVEMNPYSFSIAVRACASTGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSD 267
            V  N  +F   +RAC+  G    G +  H     +     L     ++D+  R     +
Sbjct: 649 NVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQE 708

Query: 268 ANQYFDEMT-EKDLITWNTIIA 288
           A ++ + M  + D + W T+++
Sbjct: 709 AVKFINSMPFQADAVIWKTLLS 730


>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
          Length = 863

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/553 (34%), Positives = 313/553 (56%), Gaps = 3/553 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++ T ++  Y     + +AR  F  +P   V +   M+ G        +A  +F  M+R+
Sbjct: 286 VVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRS 345

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            +  +  +LS V  AC   K       VH +AIK G +  I V N+++D+Y  C   M+ 
Sbjct: 346 SIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALME- 404

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A L+F  MK K+ VSW  +I     +G+    +  F EML  G++ + +++   ++ACA+
Sbjct: 405 AYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAA 464

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              + +G ++H  VIK G GS+  V ++++DMYC+   + +A +  D +  + +++WN I
Sbjct: 465 LRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAI 524

Query: 287 IAGYE-KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           ++G+     S E    FS+M      P+ FTF +++  CA LA +  G+Q+H  I+++ +
Sbjct: 525 LSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEM 584

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             +  +++ L+DMYAKCG++ DS  +F ++  RD V+W +M+ GY  HG G EA+ +F+ 
Sbjct: 585 LDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFER 644

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAG 464
           M K  V P+   F+AVL ACSH GL D+G +YF  M   Y + P  E + C+VD+LGR+ 
Sbjct: 645 MQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSK 704

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
             +EA + I SMPF+ D  +W  LL  CK  +   + +LAA  VL L P+    YI+LSN
Sbjct: 705 GPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDSSVYILLSN 764

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           +YA  GKW + ++ R++++    KKE G SWIEV+ ++ GF+  DK    +  +Y +L  
Sbjct: 765 VYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQSEMHGFLVGDKAHPRSGELYEMLND 824

Query: 585 LIRHMNETAYEPD 597
           LI  M  + YEPD
Sbjct: 825 LIGEMKLSGYEPD 837



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 129/433 (29%), Positives = 231/433 (53%), Gaps = 2/433 (0%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P+  ++    ++ +Y   G I  A  LFD MP+ DVVSW  +++GY       ++  +F
Sbjct: 78  MPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLF 137

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
           VEM R  V+P+  T + +LK+C  ++ LS    VH +A+K GLE  +   ++L+D+Y   
Sbjct: 138 VEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGK- 196

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
           C S+D+A   F  M  +N VSW   I G   +     GL +F EM   G+ ++  S++ A
Sbjct: 197 CRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASA 256

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
            R+CA+   ++ G+ +HA  IK+ F S+  V  +I+D+Y + + L+DA + F  +    +
Sbjct: 257 FRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTV 316

Query: 281 ITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
            T N ++ G  ++G   E + +F  M       +  + + + +ACA       GQQVH  
Sbjct: 317 ETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCL 376

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
            ++ G D ++ + NA++D+Y KC  + ++  IF  M  +D V+W +++     +GH  + 
Sbjct: 377 AIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDT 436

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL 459
           I  F+EM++ G++PD   + +VL AC+    ++ GL     +    +  +  +   VVD+
Sbjct: 437 ILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDM 496

Query: 460 LGRAGRVKEAYEL 472
             + G + EA +L
Sbjct: 497 YCKCGIIDEAQKL 509



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 110/426 (25%), Positives = 206/426 (48%), Gaps = 44/426 (10%)

Query: 108 VNPNAFTLSSVLKACK--GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           V P   T S V ++C   G ++L+     H   +  G   + +V N L+ +YA C     
Sbjct: 11  VAPARVTFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPNAFVSNCLLQMYARC-AGAA 69

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGN------------------------GYGGLGV 201
            AR VF+ M  ++ VSW T++T Y+H+G+                        GY   G+
Sbjct: 70  CARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGM 129

Query: 202 FK-------EMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNS 254
           F+       EM   GV  +  +F++ +++C++   +S G  +HA  +K G   ++   ++
Sbjct: 130 FQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSA 189

Query: 255 ILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG-YEKSGSSECLNMFSKMKSERFSPN 313
           ++DMY +   L DA  +F  M E++ ++W   IAG  +       L +F +M+      +
Sbjct: 190 LVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVS 249

Query: 314 CFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFS 373
             ++ S   +CA ++ L+ G+Q+HA  ++     +  +  A++D+YAK  +++D+++ F 
Sbjct: 250 QPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFF 309

Query: 374 EMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDE 433
            + +  + T  +MM+G    G G EA+ LF  M++S +R D +    V +AC+      +
Sbjct: 310 GLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQ 369

Query: 434 GLKY----FKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           G +      KS  D ++  N      V+DL G+   + EAY + + M  K D   W  ++
Sbjct: 370 GQQVHCLAIKSGFDVDICVNN----AVLDLYGKCKALMEAYLIFQGMKQK-DSVSWNAII 424

Query: 490 GACKEH 495
            A +++
Sbjct: 425 AALEQN 430



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 131/262 (50%), Gaps = 11/262 (4%)

Query: 29  VKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYT 88
           V KS + SD        + +A+ ++  Y   G+I+EA+ L D +  + VVSW  +++G++
Sbjct: 478 VIKSGLGSD--------AFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFS 529

Query: 89  SFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIY 148
                 +A   F EM+   + P+ FT ++VL  C  + ++     +HG  IK+ +    Y
Sbjct: 530 LNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEY 589

Query: 149 VENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE 208
           + ++L+D+YA C   M ++ LVF  ++ ++ VSW  +I GYA  G G   L +F+ M  E
Sbjct: 590 ISSTLVDMYAKCG-DMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKE 648

Query: 209 GVEMNPYSFSIAVRACASTGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSD 267
            V  N  +F   +RAC+  G    G +  H     +     L     ++D+  R     +
Sbjct: 649 NVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQE 708

Query: 268 ANQYFDEMT-EKDLITWNTIIA 288
           A ++ + M  + D + W T+++
Sbjct: 709 AVKFINSMPFQADAVIWKTLLS 730


>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
           [Vitis vinifera]
 gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/519 (38%), Positives = 313/519 (60%), Gaps = 5/519 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + +  +L+  Y + G +E AR +FD M ER +VSW  MI GY    C  +A  VF  M+ 
Sbjct: 158 AFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMIG 217

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             + P+  T+ SVL  C  +K L     VH +   + L   I V NSL+D+YA C  +MD
Sbjct: 218 KGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCG-NMD 276

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A+++F +M  ++ VSWTT++ GY  +G+    L + + M  E V+ N  + +  + ACA
Sbjct: 277 EAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACA 336

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           S   +  G+ +H   I+    S + V  +++DMY + + ++ + + F + +++    WN 
Sbjct: 337 SLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKTSKQRTAPWNA 396

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           II+G   +G S + + +F +M  E   PN  T  S++ A A L  L   + +H  ++R G
Sbjct: 397 IISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSG 456

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEM--SDRDLVTWTSMMIGYGAHGHGKEAIEL 402
               + +A  LID+Y+KCG++  +  IF+ +   D+D++TW++++ GYG HGHG+ AI L
Sbjct: 457 FLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISL 516

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLG 461
           FD+MV+SGV+P+ I F ++L ACSHAGLVDEGL  FK M  D  ++   + Y CV+DLLG
Sbjct: 517 FDQMVQSGVKPNEITFTSILHACSHAGLVDEGLGLFKFMLEDNQMSLRTDHYTCVIDLLG 576

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           RAGR++EAYELI++M F+P+ +VWG LLG+C  H    LG++AA  + +L+P   G Y++
Sbjct: 577 RAGRLEEAYELIRTMAFRPNHAVWGALLGSCVIHENVELGEVAAKWLFELEPGNTGNYVL 636

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRD 560
           L+NIY+A G+W +    R +M  +G +K    S IEVR+
Sbjct: 637 LANIYSAVGRWRDAEHVRLMMNNIGLRKTPAHSLIEVRN 675



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 137/455 (30%), Positives = 238/455 (52%), Gaps = 12/455 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L ++L  +Y   G    AR LFDE+    + SW  MI  YT+      A  +FV+M+ + 
Sbjct: 58  LLSSLAAAYAMFGCAPHARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASG 117

Query: 108 VN-PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
              P+ +T   V+KAC         AL+H   +  G +   +V+NSLM +Y  C   M+ 
Sbjct: 118 RRWPDNYTYPFVIKACGDYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCG-EMEV 176

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR VF+ M+ +  VSW T+I GY  +G     L VF  M+ +G+E +  +    +  C+ 
Sbjct: 177 ARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSY 236

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  G+ +HA V     G ++ V NS+LDMY +   + +A   F EM ++D+++W T+
Sbjct: 237 LKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTM 296

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           + GY  +G +   L +   M+ E   PN  T  S+++ACA+L +L  G+ +H   +R+ L
Sbjct: 297 MNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKL 356

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           +  + +  ALIDMYAKC N++ S ++FS+ S +    W +++ G   +G  ++AIELF +
Sbjct: 357 ESEVIVETALIDMYAKCNNVNLSFRVFSKTSKQRTAPWNAIISGCIHNGLSRKAIELFKQ 416

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN----PNKEIYGCVVDLLG 461
           M+   V P+     ++L A  +A L D  L+  ++M+ Y +        E+   ++D+  
Sbjct: 417 MLMEAVDPNDATLNSLLPA--YAFLTD--LQQARNMHGYLIRSGFLSRIEVATILIDIYS 472

Query: 462 RAGRVKEAYELIKSMPFKPDESV-WGPLLGACKEH 495
           + G ++ A+ +   +P K  + + W  ++     H
Sbjct: 473 KCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMH 507



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 119/385 (30%), Positives = 201/385 (52%), Gaps = 13/385 (3%)

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI--SMDNARLVFND 173
            S+L+ C   KS+ N   +H   I  GL  S Y  + L  + A   +     +AR +F++
Sbjct: 22  QSLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMFGCAPHARKLFDE 81

Query: 174 MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEM-NPYSFSIAVRACASTGWVSF 232
           ++  +  SW  +I  Y +SG  Y  LG+F +ML  G    + Y++   ++AC        
Sbjct: 82  LRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEM 141

Query: 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEK 292
           G LIHA  +  GF S+  V NS++ MY     +  A + FD M E+ L++WNT+I GY K
Sbjct: 142 GALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFK 201

Query: 293 SGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLAL 351
           +G   E L +F  M  +   P+C T  S++  C+ L  L  G++VHA +  + L  ++++
Sbjct: 202 NGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISV 261

Query: 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411
            N+L+DMYAKCGN+ ++Q IF EM  RD+V+WT+MM GY  +G  + A+ L   M    V
Sbjct: 262 WNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFESV 321

Query: 412 RPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE----IYGCVVDLLGRAGRVK 467
           +P+ +   +VL+AC+        LK+ + ++ + +    E    +   ++D+  +   V 
Sbjct: 322 KPNFVTLASVLSACASL----YSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVN 377

Query: 468 EAYELIKSMPFKPDESVWGPLLGAC 492
            ++ +  S   K   + W  ++  C
Sbjct: 378 LSFRVF-SKTSKQRTAPWNAIISGC 401


>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/562 (35%), Positives = 317/562 (56%), Gaps = 8/562 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++ ++L+  Y      E+A  LF+EMPE+DV  W  +I+ Y        A   F  M R 
Sbjct: 142 VVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKDALEYFGLMRRF 201

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
              PN+ T+++ + +C  +  L+    +H   I  G     ++ ++L+D+Y  C   ++ 
Sbjct: 202 GFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCG-HLEM 260

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  +F  M  K  V+W ++I+GY   G+    + +FK M  EGV+    + S  +  C+ 
Sbjct: 261 AIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSR 320

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
           +  +  GK +H   I++    ++ V +S++D+Y +   +  A + F  + +  +++WN +
Sbjct: 321 SARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSWNVM 380

Query: 287 IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+GY   G   E L +FS+M+      +  TFTS++ AC+ LAAL  G+++H  I+ + L
Sbjct: 381 ISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACSQLAALEKGKEIHNLIIEKKL 440

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           D N  +  AL+DMYAKCG + ++  +F  +  RDLV+WTSM+  YG+HGH   A+ELF E
Sbjct: 441 DNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGHAYGALELFAE 500

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAG 464
           M++S V+PDR+ F+A+L+AC HAGLVDEG  YF  M N Y + P  E Y C++DLLGRAG
Sbjct: 501 MLQSNVKPDRVAFLAILSACGHAGLVDEGCYYFNQMINVYGIIPRVEHYSCLIDLLGRAG 560

Query: 465 RVKEAYELIKSMP-FKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           R+ EAYE+++  P  + D  +   L  AC+ HR  +LG   A  ++D  P+   TYI+LS
Sbjct: 561 RLHEAYEILQQNPEIRDDVELLSTLFSACRLHRNIDLGAEIARTLIDKDPDDSSTYILLS 620

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           N+YA+  KW+E    R  M+ +G KK  G SWIE+  K+  F   D    H + V+  L 
Sbjct: 621 NMYASAHKWDEVRVVRSKMKELGLKKNPGCSWIEINQKILPFFVEDNSHLHLELVFKCLS 680

Query: 584 MLIRHMNETA----YEPDIDCL 601
            L  HM + +    Y  D++ L
Sbjct: 681 YLSDHMEDESKSFTYHLDVETL 702



 Score =  231 bits (590), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 154/516 (29%), Positives = 266/516 (51%), Gaps = 11/516 (2%)

Query: 17  KIPPIIKQSL--QSVKKSSI--QSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEM 72
           K+ P+++  +  +S+K+  +  Q    L  +    L   LI  Y    L + A+ +FD M
Sbjct: 5   KLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVFDNM 64

Query: 73  PERDVVS-WTVMIAGYTSFNCHNQAWTVFVEMVRNE-VNPNAFTLSSVLKACKGMKSLSN 130
                +S W  ++AGYT    + +A  +F +++    + P+++T  SV KAC G+     
Sbjct: 65  ENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHRYVL 124

Query: 131 AALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYA 190
             ++H   IK GL   I V +SL+ +Y  C  + + A  +FN+M  K+   W T+I+ Y 
Sbjct: 125 GKMIHTCLIKTGLMMDIVVGSSLVGMYGKCN-AFEKAIWLFNEMPEKDVACWNTVISCYY 183

Query: 191 HSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLP 250
            SGN    L  F  M   G E N  + + A+ +CA    ++ G  IH  +I  GF  +  
Sbjct: 184 QSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSF 243

Query: 251 VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSER 309
           + ++++DMY +   L  A + F++M +K ++ WN++I+GY   G    C+ +F +M +E 
Sbjct: 244 ISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEG 303

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
             P   T +S+I  C+  A L  G+ VH   +R  +  ++ + ++L+D+Y KCG +  ++
Sbjct: 304 VKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAE 363

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
           KIF  +    +V+W  M+ GY A G   EA+ LF EM KS V  D I F +VLTACS   
Sbjct: 364 KIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACSQLA 423

Query: 430 LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
            +++G +    + +  ++ N+ + G ++D+  + G V EA+ + K +P K D   W  ++
Sbjct: 424 ALEKGKEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLP-KRDLVSWTSMI 482

Query: 490 GA--CKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
            A     H    L   A +   ++KP+ +    ILS
Sbjct: 483 TAYGSHGHAYGALELFAEMLQSNVKPDRVAFLAILS 518



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 169/345 (48%), Gaps = 4/345 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S +++ L+  Y   G +E A  +F++MP++ VV+W  MI+GY           +F  M  
Sbjct: 242 SFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYN 301

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             V P   TLSS++  C     L     VHG  I+  ++  ++V +SLMD+Y  C   ++
Sbjct: 302 EGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCG-KVE 360

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A  +F  +     VSW  +I+GY   G  +  LG+F EM    VE +  +F+  + AC+
Sbjct: 361 LAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACS 420

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               +  GK IH  +I+    +N  VM ++LDMY +   + +A   F  + ++DL++W +
Sbjct: 421 QLAALEKGKEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTS 480

Query: 286 IIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR-R 343
           +I  Y   G +   L +F++M      P+   F +I++AC     +  G      ++   
Sbjct: 481 MITAYGSHGHAYGALELFAEMLQSNVKPDRVAFLAILSACGHAGLVDEGCYYFNQMINVY 540

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSD-RDLVTWTSMM 387
           G+   +   + LID+  + G + ++ +I  +  + RD V   S +
Sbjct: 541 GIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLSTL 585


>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
 gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 905

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/553 (34%), Positives = 313/553 (56%), Gaps = 3/553 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++ T ++  Y     + +AR  F  +P   V +   M+ G        +A  +F  M+R+
Sbjct: 328 VVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRS 387

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            +  +  +LS V  AC   K       VH +AIK G +  I V N+++D+Y  C   M+ 
Sbjct: 388 SIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALME- 446

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A L+F  MK K+ VSW  +I     +G+    +  F EML  G++ + +++   ++ACA+
Sbjct: 447 AYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAA 506

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              + +G ++H  VIK G GS+  V ++++DMYC+   + +A +  D +  + +++WN I
Sbjct: 507 LRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAI 566

Query: 287 IAGYE-KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           ++G+     S E    FS+M      P+ FTF +++  CA LA +  G+Q+H  I+++ +
Sbjct: 567 LSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEM 626

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             +  +++ L+DMYAKCG++ DS  +F ++  RD V+W +M+ GY  HG G EA+ +F+ 
Sbjct: 627 LDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFER 686

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAG 464
           M K  V P+   F+AVL ACSH GL D+G +YF  M   Y + P  E + C+VD+LGR+ 
Sbjct: 687 MQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSK 746

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
             +EA + I SMPF+ D  +W  LL  CK  +   + +LAA  VL L P+    YI+LSN
Sbjct: 747 GPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDSSVYILLSN 806

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           +YA  GKW + ++ R++++    KKE G SWIEV+ ++ GF+  DK    +  +Y +L  
Sbjct: 807 VYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQSEMHGFLVGDKAHPRSGELYEMLND 866

Query: 585 LIRHMNETAYEPD 597
           LI  M  + YEPD
Sbjct: 867 LIGEMKLSGYEPD 879



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 129/433 (29%), Positives = 231/433 (53%), Gaps = 2/433 (0%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P+  ++    ++ +Y   G I  A  LFD MP+ DVVSW  +++GY       ++  +F
Sbjct: 120 MPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLF 179

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
           VEM R  V+P+  T + +LK+C  ++ LS    VH +A+K GLE  +   ++L+D+Y   
Sbjct: 180 VEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGK- 238

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
           C S+D+A   F  M  +N VSW   I G   +     GL +F EM   G+ ++  S++ A
Sbjct: 239 CRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASA 298

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
            R+CA+   ++ G+ +HA  IK+ F S+  V  +I+D+Y + + L+DA + F  +    +
Sbjct: 299 FRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTV 358

Query: 281 ITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
            T N ++ G  ++G   E + +F  M       +  + + + +ACA       GQQVH  
Sbjct: 359 ETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCL 418

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
            ++ G D ++ + NA++D+Y KC  + ++  IF  M  +D V+W +++     +GH  + 
Sbjct: 419 AIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDT 478

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL 459
           I  F+EM++ G++PD   + +VL AC+    ++ GL     +    +  +  +   VVD+
Sbjct: 479 ILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDM 538

Query: 460 LGRAGRVKEAYEL 472
             + G + EA +L
Sbjct: 539 YCKCGIIDEAQKL 551



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 110/426 (25%), Positives = 206/426 (48%), Gaps = 44/426 (10%)

Query: 108 VNPNAFTLSSVLKACK--GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           V P   T S V ++C   G ++L+     H   +  G   + +V N L+ +YA C     
Sbjct: 53  VAPARVTFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPTAFVSNCLLQMYARC-AGAA 111

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGN------------------------GYGGLGV 201
            AR VF+ M  ++ VSW T++T Y+H+G+                        GY   G+
Sbjct: 112 CARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGM 171

Query: 202 FK-------EMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNS 254
           F+       EM   GV  +  +F++ +++C++   +S G  +HA  +K G   ++   ++
Sbjct: 172 FQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSA 231

Query: 255 ILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG-YEKSGSSECLNMFSKMKSERFSPN 313
           ++DMY +   L DA  +F  M E++ ++W   IAG  +       L +F +M+      +
Sbjct: 232 LVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVS 291

Query: 314 CFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFS 373
             ++ S   +CA ++ L+ G+Q+HA  ++     +  +  A++D+YAK  +++D+++ F 
Sbjct: 292 QPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFF 351

Query: 374 EMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDE 433
            + +  + T  +MM+G    G G EA+ LF  M++S +R D +    V +AC+      +
Sbjct: 352 GLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQ 411

Query: 434 GLKY----FKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           G +      KS  D ++  N      V+DL G+   + EAY + + M  K D   W  ++
Sbjct: 412 GQQVHCLAIKSGFDVDICVNN----AVLDLYGKCKALMEAYLIFQGMKQK-DSVSWNAII 466

Query: 490 GACKEH 495
            A +++
Sbjct: 467 AALEQN 472



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 131/262 (50%), Gaps = 11/262 (4%)

Query: 29  VKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYT 88
           V KS + SD        + +A+ ++  Y   G+I+EA+ L D +  + VVSW  +++G++
Sbjct: 520 VIKSGLGSD--------AFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFS 571

Query: 89  SFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIY 148
                 +A   F EM+   + P+ FT ++VL  C  + ++     +HG  IK+ +    Y
Sbjct: 572 LNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEY 631

Query: 149 VENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE 208
           + ++L+D+YA C   M ++ LVF  ++ ++ VSW  +I GYA  G G   L +F+ M  E
Sbjct: 632 ISSTLVDMYAKCG-DMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKE 690

Query: 209 GVEMNPYSFSIAVRACASTGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSD 267
            V  N  +F   +RAC+  G    G +  H     +     L     ++D+  R     +
Sbjct: 691 NVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQE 750

Query: 268 ANQYFDEMT-EKDLITWNTIIA 288
           A ++ + M  + D + W T+++
Sbjct: 751 AVKFINSMPFQADAVIWKTLLS 772


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/558 (36%), Positives = 321/558 (57%), Gaps = 9/558 (1%)

Query: 55  SYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFT 114
           S  + G ++ AR +F ++P     +   +I G T  N H +A   + EM+   + P+ +T
Sbjct: 31  SLQESGSLQYARLVFSQIPNPTSYTCNSIIRGCTDKNLHQEALLFYQEMMVQGLIPDRYT 90

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNARLVFND 173
             S+ K+C+     S    +H  + K G     Y +N+LM++Y+ C C+   +AR VF+ 
Sbjct: 91  FPSLFKSCRNS---SEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLV--SARKVFDK 145

Query: 174 MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLL-EGVEMNPYSFSIAVRACASTGWVSF 232
           M+ K  VSW T+I  +A        + +F  M+  E V+ N  +    + ACA    ++ 
Sbjct: 146 MEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAM 205

Query: 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-E 291
            K IH  + +HGFG ++ +   ++D+YC+  C+  A   FD+  EK+L +WN +I G+ E
Sbjct: 206 VKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVE 265

Query: 292 KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLAL 351
            S   E L +F +M+++    +  T  S++ AC  L AL  G+ +HA I ++ +D ++AL
Sbjct: 266 DSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVAL 325

Query: 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411
             AL+DMYAKCG+I  + ++F EM ++D++TWT++++G    G  + A++ FDEM   GV
Sbjct: 326 GTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGV 385

Query: 412 RPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAY 470
           +PD I F+ VL ACSHAG VDEG+ +F SM+D Y + P  E YG +VD+LGRAGR+ EA 
Sbjct: 386 KPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAE 445

Query: 471 ELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEG 530
           ELIKSMP  PD+ V G LLGAC+ H      + AA ++L++ P   GTY++LSNIY +  
Sbjct: 446 ELIKSMPMAPDQFVLGGLLGACRIHGNLEAAERAAKQLLEIDPYHSGTYVLLSNIYKSSK 505

Query: 531 KWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMN 590
           KWEE  + R++M   G +K  G S IEV   V  F+  D     +  +  +LE +I  + 
Sbjct: 506 KWEEAKRTRELMAERGMRKPPGCSQIEVHGVVHEFVKGDSSHRQSSEINEMLEDMISKLK 565

Query: 591 ETAYEPDIDCLIHDLEGE 608
              Y PD   ++ D+  E
Sbjct: 566 NAGYVPDKSEVLFDMAEE 583



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 180/376 (47%), Gaps = 29/376 (7%)

Query: 16  HKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATN-LIKSYFDEGLIEEARTLFDEMPE 74
           +  P + K    S +   I      +       A N L+  Y + G +  AR +FD+M +
Sbjct: 89  YTFPSLFKSCRNSSEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMED 148

Query: 75  RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE-VNPNAFTLSSVLKACKGMKSLSNAAL 133
           + VVSW  MI  +  ++  N+A  +F  M+++E V PN  TL +VL AC   + L+    
Sbjct: 149 KTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKR 208

Query: 134 VHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNARLVFNDMKWKNDVSWTTLITGYAHS 192
           +H    + G    + +   LMDVY  C C+ +  AR +F+  + KN  SW  +I G+   
Sbjct: 209 IHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQL--ARDLFDKAQEKNLFSWNIMINGHVED 266

Query: 193 GNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVM 252
            N    L +F+EM  +G++ +  + +  + AC   G +  GK +HA + K     ++ + 
Sbjct: 267 SNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALG 326

Query: 253 NSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFS 311
            +++DMY +   +  A Q F EM EKD++TW  +I G    G +E  L  F +M  +   
Sbjct: 327 TALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVK 386

Query: 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN------------ALIDMY 359
           P+  TF  ++AAC+           HAG V  G+    ++++             L+D+ 
Sbjct: 387 PDAITFVGVLAACS-----------HAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDIL 435

Query: 360 AKCGNISDSQKIFSEM 375
            + G I++++++   M
Sbjct: 436 GRAGRIAEAEELIKSM 451


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/577 (35%), Positives = 334/577 (57%), Gaps = 17/577 (2%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S +   L+  Y   G +  ++ L      RD+V+W  +++         +A     EMV 
Sbjct: 236 SFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVL 295

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG-LEGSIYVENSLMDVYATCCISM 164
             V P+ FT+SSVL AC  ++ L     +H  A+K G L+ + +V ++L+D+Y  C   +
Sbjct: 296 EGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVL 355

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAVRA 223
            + R VF+ M  +    W  +I GY+ + +    L +F  M    G+  N  + +  V A
Sbjct: 356 -SGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPA 414

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C  +G  S  + IH  V+K G   +  V N+++DMY R   +  A + F +M ++DL+TW
Sbjct: 415 CVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTW 474

Query: 284 NTIIAGYEKSGSSE-CLNMFSKMKS-ER----------FSPNCFTFTSIIAACATLAALS 331
           NT+I GY  S   E  L +  KM++ ER            PN  T  +I+ +CA L+AL+
Sbjct: 475 NTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALA 534

Query: 332 CGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG 391
            G+++HA  ++  L  ++A+ +AL+DMYAKCG +  S+K+F ++  ++++TW  +++ YG
Sbjct: 535 KGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYG 594

Query: 392 AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNK 450
            HG+G+EAI+L   M+  GV+P+ + F++V  ACSH+G+VDEGL+ F  M  DY V P+ 
Sbjct: 595 MHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSS 654

Query: 451 EIYGCVVDLLGRAGRVKEAYELIKSMPFKPDES-VWGPLLGACKEHRLPNLGKLAALRVL 509
           + Y CVVDLLGRAGR+KEAY+L+  MP   +++  W  LLGA + H    +G++AA  ++
Sbjct: 655 DHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLI 714

Query: 510 DLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIAND 569
            L+PN+   Y++L+NIY++ G W++  + R+ M+  G +KE G SWIE  D+V  F+A D
Sbjct: 715 QLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGD 774

Query: 570 KMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
                ++ + G LE L   M +  Y PD  C++H++E
Sbjct: 775 SSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVE 811



 Score =  191 bits (485), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 122/449 (27%), Positives = 224/449 (49%), Gaps = 19/449 (4%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A  L+  Y   G       +FD + ER+ VSW  +I+   SF     A   F  M+   
Sbjct: 135 VANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEN 194

Query: 108 VNPNAFTLSSVLKACKGM---KSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
           V P++FTL SV+ AC  +   + L     VH   +++G E + ++ N+L+ +Y      +
Sbjct: 195 VEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLG-KL 252

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
            +++++      ++ V+W T+++    +      L   +EM+LEGVE + ++ S  + AC
Sbjct: 253 ASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPAC 312

Query: 225 ASTGWVSFGKLIHAAVIKHG-FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           +    +  GK +HA  +K+G    N  V ++++DMYC    +    + FD M ++ +  W
Sbjct: 313 SHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLW 372

Query: 284 NTIIAGYEKS-GSSECLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           N +IAGY ++    E L +F  M +S     N  T   ++ AC    A S  + +H  +V
Sbjct: 373 NAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVV 432

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           +RGLD +  + N L+DMY++ G I  + +IF +M DRDLVTW +M+ GY    H ++A+ 
Sbjct: 433 KRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALL 492

Query: 402 LFDEM-----------VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK 450
           L  +M            +  ++P+ I  M +L +C+    + +G +        N+  + 
Sbjct: 493 LLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDV 552

Query: 451 EIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
            +   +VD+  + G ++ + ++   +P K
Sbjct: 553 AVGSALVDMYAKCGCLQMSRKVFDQIPQK 581



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 127/508 (25%), Positives = 232/508 (45%), Gaps = 29/508 (5%)

Query: 80  WTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAI 139
           W  ++      N   +A   +V+M+   + P+ +   ++LKA   ++ +     +H    
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 140 KEGLE-GSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGG 198
           K G    S+ V N+L+++Y  C         VF+ +  +N VSW +LI+           
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCG-DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMA 183

Query: 199 LGVFKEMLLEGVEMNPYSFSIAVRACASTGW---VSFGKLIHAAVIKHGFGSNLPVMNSI 255
           L  F+ ML E VE + ++    V AC++      +  GK +HA  ++ G   N  ++N++
Sbjct: 184 LEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTL 242

Query: 256 LDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNC 314
           + MY +   L+ +         +DL+TWNT+++   +     E L    +M  E   P+ 
Sbjct: 243 VAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDE 302

Query: 315 FTFTSIIAACATLAALSCGQQVHAGIVRRG-LDGNLALANALIDMYAKCGNISDSQKIFS 373
           FT +S++ AC+ L  L  G+++HA  ++ G LD N  + +AL+DMY  C  +   +++F 
Sbjct: 303 FTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFD 362

Query: 374 EMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS-GVRPDRIVFMAVLTACSHAGLVD 432
            M DR +  W +M+ GY  + H KEA+ LF  M +S G+  +      V+ AC  +G   
Sbjct: 363 GMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFS 422

Query: 433 EGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL--- 489
                   +    ++ ++ +   ++D+  R G++  A  +   M  + D   W  ++   
Sbjct: 423 RKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDR-DLVTWNTMITGY 481

Query: 490 --------GACKEHRLPNLGK---LAALRVLDLKPNMMGTYIILSNIYA--AEGKWEEFA 536
                        H++ NL +     A RV  LKPN +    IL +  A  A  K +E  
Sbjct: 482 VFSEHHEDALLLLHKMQNLERKVSKGASRV-SLKPNSITLMTILPSCAALSALAKGKEIH 540

Query: 537 KFRKIMRGMGSKKEVGMSWIEVRDKVCG 564
            +  I   + +   VG + +++  K CG
Sbjct: 541 AY-AIKNNLATDVAVGSALVDMYAK-CG 566


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/577 (35%), Positives = 334/577 (57%), Gaps = 17/577 (2%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S +   L+  Y   G +  ++ L      RD+V+W  +++         +A     EMV 
Sbjct: 236 SFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVL 295

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG-LEGSIYVENSLMDVYATCCISM 164
             V P+ FT+SSVL AC  ++ L     +H  A+K G L+ + +V ++L+D+Y  C   +
Sbjct: 296 EGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVL 355

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAVRA 223
            + R VF+ M  +    W  +I GY+ + +    L +F  M    G+  N  + +  V A
Sbjct: 356 -SGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPA 414

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C  +G  S  + IH  V+K G   +  V N+++DMY R   +  A + F +M ++DL+TW
Sbjct: 415 CVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTW 474

Query: 284 NTIIAGYEKSGSSE-CLNMFSKMKS-ER----------FSPNCFTFTSIIAACATLAALS 331
           NT+I GY  S   E  L +  KM++ ER            PN  T  +I+ +CA L+AL+
Sbjct: 475 NTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALA 534

Query: 332 CGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG 391
            G+++HA  ++  L  ++A+ +AL+DMYAKCG +  S+K+F ++  ++++TW  +++ YG
Sbjct: 535 KGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYG 594

Query: 392 AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNK 450
            HG+G+EAI+L   M+  GV+P+ + F++V  ACSH+G+VDEGL+ F  M  DY V P+ 
Sbjct: 595 MHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSS 654

Query: 451 EIYGCVVDLLGRAGRVKEAYELIKSMPFKPDES-VWGPLLGACKEHRLPNLGKLAALRVL 509
           + Y CVVDLLGRAGR+KEAY+L+  MP   +++  W  LLGA + H    +G++AA  ++
Sbjct: 655 DHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLI 714

Query: 510 DLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIAND 569
            L+PN+   Y++L+NIY++ G W++  + R+ M+  G +KE G SWIE  D+V  F+A D
Sbjct: 715 QLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGD 774

Query: 570 KMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
                ++ + G LE L   M +  Y PD  C++H++E
Sbjct: 775 SSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVE 811



 Score =  191 bits (485), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 122/449 (27%), Positives = 224/449 (49%), Gaps = 19/449 (4%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A  L+  Y   G       +FD + ER+ VSW  +I+   SF     A   F  M+   
Sbjct: 135 VANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEN 194

Query: 108 VNPNAFTLSSVLKACKGM---KSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
           V P++FTL SV+ AC  +   + L     VH   +++G E + ++ N+L+ +Y      +
Sbjct: 195 VEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLG-KL 252

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
            +++++      ++ V+W T+++    +      L   +EM+LEGVE + ++ S  + AC
Sbjct: 253 ASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPAC 312

Query: 225 ASTGWVSFGKLIHAAVIKHG-FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           +    +  GK +HA  +K+G    N  V ++++DMYC    +    + FD M ++ +  W
Sbjct: 313 SHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLW 372

Query: 284 NTIIAGYEKS-GSSECLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           N +IAGY ++    E L +F  M +S     N  T   ++ AC    A S  + +H  +V
Sbjct: 373 NAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVV 432

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           +RGLD +  + N L+DMY++ G I  + +IF +M DRDLVTW +M+ GY    H ++A+ 
Sbjct: 433 KRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALL 492

Query: 402 LFDEM-----------VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK 450
           L  +M            +  ++P+ I  M +L +C+    + +G +        N+  + 
Sbjct: 493 LLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDV 552

Query: 451 EIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
            +   +VD+  + G ++ + ++   +P K
Sbjct: 553 AVGSALVDMYAKCGCLQMSRKVFDQIPQK 581



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 127/508 (25%), Positives = 232/508 (45%), Gaps = 29/508 (5%)

Query: 80  WTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAI 139
           W  ++      N   +A   +V+M+   + P+ +   ++LKA   ++ +     +H    
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 140 KEGLE-GSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGG 198
           K G    S+ V N+L+++Y  C         VF+ +  +N VSW +LI+           
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCG-DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMA 183

Query: 199 LGVFKEMLLEGVEMNPYSFSIAVRACASTGW---VSFGKLIHAAVIKHGFGSNLPVMNSI 255
           L  F+ ML E VE + ++    V AC++      +  GK +HA  ++ G   N  ++N++
Sbjct: 184 LEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTL 242

Query: 256 LDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNC 314
           + MY +   L+ +         +DL+TWNT+++   +     E L    +M  E   P+ 
Sbjct: 243 VAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDE 302

Query: 315 FTFTSIIAACATLAALSCGQQVHAGIVRRG-LDGNLALANALIDMYAKCGNISDSQKIFS 373
           FT +S++ AC+ L  L  G+++HA  ++ G LD N  + +AL+DMY  C  +   +++F 
Sbjct: 303 FTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFD 362

Query: 374 EMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS-GVRPDRIVFMAVLTACSHAGLVD 432
            M DR +  W +M+ GY  + H KEA+ LF  M +S G+  +      V+ AC  +G   
Sbjct: 363 GMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFS 422

Query: 433 EGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL--- 489
                   +    ++ ++ +   ++D+  R G++  A  +   M  + D   W  ++   
Sbjct: 423 RKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDR-DLVTWNTMITGY 481

Query: 490 --------GACKEHRLPNLGK---LAALRVLDLKPNMMGTYIILSNIYA--AEGKWEEFA 536
                        H++ NL +     A RV  LKPN +    IL +  A  A  K +E  
Sbjct: 482 VFSEHHEDALLLLHKMQNLERKVSKGASRV-SLKPNSITLMTILPSCAALSALAKGKEIH 540

Query: 537 KFRKIMRGMGSKKEVGMSWIEVRDKVCG 564
            +  I   + +   VG + +++  K CG
Sbjct: 541 AY-AIKNNLATDVAVGSALVDMYAK-CG 566


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/559 (36%), Positives = 322/559 (57%), Gaps = 4/559 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y   G I++AR +FD M +RDV+SW  MI G     C ++A+T+F++M +    P+
Sbjct: 275 LIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPD 334

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
           + T  S+L       +      VH  A++ GL   + V ++ + +Y  C  S+D+A+L+F
Sbjct: 335 STTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCG-SIDDAQLIF 393

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           + +  +N  +W  +I G A    G   L +F +M  EG   +  +F   + A      + 
Sbjct: 394 DKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALE 453

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
           + K +H+  I  G   +L V N+++ MY +      A Q FD+M E+++ TW  +I+G  
Sbjct: 454 WVKEVHSYAIDAGL-VDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLA 512

Query: 292 KSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           + G   E  ++F +M  E   P+  T+ SI++ACA+  AL   ++VH+  V  GL  +L 
Sbjct: 513 QHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLR 572

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           + NAL+ MYAKCG++ D++++F +M +RD+ +WT M+ G   HG G +A++LF +M   G
Sbjct: 573 VGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEG 632

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
            +P+   F+AVL+ACSHAGLVDEG + F S+  DY + P  E Y C+VDLLGRAG+++EA
Sbjct: 633 FKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEA 692

Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529
              I +MP +P ++ WG LLGAC  +    + + AA   L LKP    TY++LSNIYAA 
Sbjct: 693 KHFILNMPIEPGDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAAT 752

Query: 530 GKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHM 589
           G WE+    R +M+  G +KE G SWIEV +++  F+  D     ++ +Y  L+ LI+ +
Sbjct: 753 GNWEQKLLVRSMMQRRGIRKEPGRSWIEVDNQIHSFVVGDTSHPESKEIYAKLKDLIKRL 812

Query: 590 NETAYEPDIDCLIHDLEGE 608
               Y PD   ++ + + E
Sbjct: 813 KAEGYVPDTRLVLRNTDQE 831



 Score =  235 bits (599), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 154/531 (29%), Positives = 273/531 (51%), Gaps = 18/531 (3%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T L+  Y   G I++A+ +FD+M ER+V+SWTVMI G   +    +A+  F++M R    
Sbjct: 69  TALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFI 128

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           PN++T  S+L A     +L     VH  A+  GL   + V N+L+ +YA    S+D+AR+
Sbjct: 129 PNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSG-SIDDARV 187

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGV--EMNPYSFSIAVRACAST 227
           VF+ M  ++  SWT +I G A  G G     +F +M   G    +  Y   +   A  ST
Sbjct: 188 VFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITST 247

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
           G + + K +H    K GF S+L V N+++ MY +   + DA   FD M ++D+I+WN +I
Sbjct: 248 GALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMI 307

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            G  ++G   E   +F KM+ E F P+  T+ S++    +  A    ++VH   V  GL 
Sbjct: 308 GGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLV 367

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            +L + +A + MY +CG+I D+Q IF +++ R++ TW +M+ G      G+EA+ LF +M
Sbjct: 368 SDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQM 427

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP---NKEIYGCVVDLLGRA 463
            + G  PD   F+ +L+    A + +E L++ K ++ Y ++    +  +   +V +  + 
Sbjct: 428 RREGFFPDATTFVNILS----ANVGEEALEWVKEVHSYAIDAGLVDLRVGNALVHMYAKC 483

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVL--DLKPNMMGTYII 521
           G    A ++   M  + + + W  ++    +H   +      L++L   + P+   TY+ 
Sbjct: 484 GNTMYAKQVFDDM-VERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDAT-TYVS 541

Query: 522 LSNIYAAEG--KWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDK 570
           + +  A+ G  +W +      +  G+ S   VG + + +  K CG + + +
Sbjct: 542 ILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAK-CGSVDDAR 591



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 125/417 (29%), Positives = 212/417 (50%), Gaps = 5/417 (1%)

Query: 83  MIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG 142
           MI GY  +     A  V+ +M R    PN  T  S+LKAC    SL     +H   I+ G
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 143 LEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVF 202
            +  + VE +L+++Y  C  S+D+A+L+F+ M  +N +SWT +I G AH G G      F
Sbjct: 61  FQSDVRVETALVNMYVKCG-SIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRF 119

Query: 203 KEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRF 262
            +M  EG   N Y++   + A AS G + + K +H+  +  G   +L V N+++ MY + 
Sbjct: 120 LQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKS 179

Query: 263 DCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSII 321
             + DA   FD M E+D+ +W  +I G  + G   E  ++F +M+     PN  T+ SI+
Sbjct: 180 GSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSIL 239

Query: 322 AACA--TLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD 379
            A A  +  AL   ++VH    + G   +L + NALI MYAKCG+I D++ +F  M DRD
Sbjct: 240 NASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRD 299

Query: 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439
           +++W +M+ G   +G G EA  +F +M + G  PD   ++++L      G  +   +  K
Sbjct: 300 VISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHK 359

Query: 440 SMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR 496
              +  +  +  +    V +  R G + +A  +   +  + + + W  ++G   + +
Sbjct: 360 HAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVR-NVTTWNAMIGGVAQQK 415



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 111/394 (28%), Positives = 204/394 (51%), Gaps = 10/394 (2%)

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG 244
           +I GYA  G     + V+ +M  EG + N  ++   ++AC S   + +GK IHA +I+ G
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 245 FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFS 303
           F S++ V  ++++MY +   + DA   FD+M E+++I+W  +I G    G   E  + F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 304 KMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG 363
           +M+ E F PN +T+ SI+ A A+  AL   ++VH+  V  GL  +L + NAL+ MYAK G
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSG 180

Query: 364 NISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL- 422
           +I D++ +F  M +RD+ +WT M+ G   HG G+EA  LF +M + G  P+   ++++L 
Sbjct: 181 SIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILN 240

Query: 423 -TACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481
            +A +  G ++   +  K         +  +   ++ +  + G + +A  +   M  + D
Sbjct: 241 ASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDR-D 299

Query: 482 ESVWGPLLGACKEHRLPNLGKLAALRVLD--LKPNMMGTYIILSNIYAAEGKWEEFAKFR 539
              W  ++G   ++   +      L++      P+   TY+ L N + + G WE   +  
Sbjct: 300 VISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDST-TYLSLLNTHVSTGAWEWVKEVH 358

Query: 540 K--IMRGMGSKKEVGMSWIEVRDKVCGFIANDKM 571
           K  +  G+ S   VG +++ +  + CG I + ++
Sbjct: 359 KHAVEVGLVSDLRVGSAFVHMYIR-CGSIDDAQL 391


>gi|356514095|ref|XP_003525742.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 700

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/556 (35%), Positives = 324/556 (58%), Gaps = 5/556 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV-RN 106
           + + LI+ Y   G + +A  +F E P++DVV WT +I GY        A   F  MV   
Sbjct: 142 VGSALIELYSKCGQMNDAVKVFTEYPKQDVVLWTSIITGYEQNGSPELALAFFSRMVVLE 201

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           +V+P+  TL S   AC  +   +    VHG   + G +  + + NS++++Y     S+ +
Sbjct: 202 QVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTG-SIRS 260

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  +F +M +K+ +SW++++  YA +G     L +F EM+ + +E+N  +   A+RACAS
Sbjct: 261 AANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACAS 320

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
           +  +  GK IH   + +GF  ++ V  +++DMY +     +A   F+ M +KD+++W  +
Sbjct: 321 SSNLEEGKHIHKLAVNYGFELDITVSTALMDMYMKCFSPKNAIDLFNRMPKKDVVSWAVL 380

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
            +GY + G + + L +F  M S    P+      I+AA + L  +     +HA + + G 
Sbjct: 381 FSGYAEIGMAHKSLGVFCNMLSYGTRPDAIALVKILAASSELGIVQQALCLHAFVSKSGF 440

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           D N  +  +LI++YAKC +I ++ K+F  M  +D+VTW+S++  YG HG G+EA++LF +
Sbjct: 441 DNNEFIGASLIELYAKCSSIDNANKVFKGMRRKDVVTWSSIIAAYGFHGQGEEALKLFYQ 500

Query: 406 MVK-SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRA 463
           M   S V+P+ + F+++L+ACSHAGL++EG+K F  M N+Y + PN E YG +VDLLGR 
Sbjct: 501 MSNHSDVKPNDVTFVSILSACSHAGLIEEGIKMFHVMVNEYQLMPNTEHYGIMVDLLGRM 560

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G + +A ++I  MP +    VWG LLGAC+ H+   +G+LAAL +  L PN  G Y +LS
Sbjct: 561 GELDKALDMINEMPMQAGPHVWGALLGACRIHQNIKIGELAALNLFLLDPNHAGYYTLLS 620

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           NIY  +  W + AK R +++    KK VG S +E++++V  FIA+D+    +  +YG+L 
Sbjct: 621 NIYCVDKNWHDAAKLRTLIKENRFKKIVGQSMVEIKNEVHSFIASDRFHGESDQIYGMLR 680

Query: 584 MLIRHMNETAYEPDID 599
            L   M E  Y+P + 
Sbjct: 681 KLDARMKEEGYDPPVQ 696



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 145/509 (28%), Positives = 257/509 (50%), Gaps = 19/509 (3%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S + T L   Y     +  A  LF+E P + V  W  ++  Y       +  ++F +M  
Sbjct: 36  SFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEGKWVETLSLFHQMNA 95

Query: 106 N---EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           +   E  P+ +T+S  LK+C G++ L    ++HG   K+ ++  ++V ++L+++Y+ C  
Sbjct: 96  DAITEERPDNYTVSIALKSCSGLQKLELGKMIHGFLKKKKIDNDMFVGSALIELYSKCG- 154

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEM-LLEGVEMNPYSFSIAV 221
            M++A  VF +   ++ V WT++ITGY  +G+    L  F  M +LE V  +P +   A 
Sbjct: 155 QMNDAVKVFTEYPKQDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAA 214

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
            ACA     + G+ +H  V + GF + L + NSIL++Y +   +  A   F EM  KD+I
Sbjct: 215 SACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRSAANLFREMPYKDII 274

Query: 282 TWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           +W++++A Y  +G+ +  LN+F++M  +R   N  T  S + ACA+ + L  G+ +H   
Sbjct: 275 SWSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKHIHKLA 334

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           V  G + ++ ++ AL+DMY KC +  ++  +F+ M  +D+V+W  +  GY   G   +++
Sbjct: 335 VNYGFELDITVSTALMDMYMKCFSPKNAIDLFNRMPKKDVVSWAVLFSGYAEIGMAHKSL 394

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLL 460
            +F  M+  G RPD I  + +L A S  G+V + L     ++    + N+ I   +++L 
Sbjct: 395 GVFCNMLSYGTRPDAIALVKILAASSELGIVQQALCLHAFVSKSGFDNNEFIGASLIELY 454

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVL-------DLKP 513
            +   +  A ++ K M  K D   W  ++ A   H         AL++        D+KP
Sbjct: 455 AKCSSIDNANKVFKGMRRK-DVVTWSSIIAAYGFHGQGE----EALKLFYQMSNHSDVKP 509

Query: 514 NMMGTYIILSNIYAAEGKWEEFAKFRKIM 542
           N +    ILS    A G  EE  K   +M
Sbjct: 510 NDVTFVSILSACSHA-GLIEEGIKMFHVM 537



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 108/366 (29%), Positives = 192/366 (52%), Gaps = 7/366 (1%)

Query: 134 VHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSG 193
           +H   +K GL    +V   L  +YA    S+ +A  +F +   K    W  L+  Y   G
Sbjct: 23  LHSQCLKVGLAHDSFVVTKLNVLYARYA-SLCHAHKLFEETPCKTVYLWNALLRSYFLEG 81

Query: 194 NGYGGLGVFKEMLLEGV-EMNP--YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLP 250
                L +F +M  + + E  P  Y+ SIA+++C+    +  GK+IH  + K    +++ 
Sbjct: 82  KWVETLSLFHQMNADAITEERPDNYTVSIALKSCSGLQKLELGKMIHGFLKKKKIDNDMF 141

Query: 251 VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKS-E 308
           V ++++++Y +   ++DA + F E  ++D++ W +II GYE++GS E  L  FS+M   E
Sbjct: 142 VGSALIELYSKCGQMNDAVKVFTEYPKQDVVLWTSIITGYEQNGSPELALAFFSRMVVLE 201

Query: 309 RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDS 368
           + SP+  T  S  +ACA L+  + G+ VH  + RRG D  L LAN+++++Y K G+I  +
Sbjct: 202 QVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRSA 261

Query: 369 QKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHA 428
             +F EM  +D+++W+SM+  Y  +G    A+ LF+EM+   +  +R+  ++ L AC+ +
Sbjct: 262 ANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACASS 321

Query: 429 GLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPL 488
             ++EG    K   +Y    +  +   ++D+  +    K A +L   MP K D   W  L
Sbjct: 322 SNLEEGKHIHKLAVNYGFELDITVSTALMDMYMKCFSPKNAIDLFNRMP-KKDVVSWAVL 380

Query: 489 LGACKE 494
                E
Sbjct: 381 FSGYAE 386


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/577 (35%), Positives = 334/577 (57%), Gaps = 17/577 (2%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S +   L+  Y   G +  ++ L      RD+V+W  +++         +A     EMV 
Sbjct: 149 SFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVL 208

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG-LEGSIYVENSLMDVYATCCISM 164
             V P+ FT+SSVL AC  ++ L     +H  A+K G L+ + +V ++L+D+Y  C   +
Sbjct: 209 EGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVL 268

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAVRA 223
            + R VF+ M  +    W  +I GY+ + +    L +F  M    G+  N  + +  V A
Sbjct: 269 -SGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPA 327

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C  +G  S  + IH  V+K G   +  V N+++DMY R   +  A + F +M ++DL+TW
Sbjct: 328 CVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTW 387

Query: 284 NTIIAGYEKSGSSE-CLNMFSKMKS-ER----------FSPNCFTFTSIIAACATLAALS 331
           NT+I GY  S   E  L +  KM++ ER            PN  T  +I+ +CA L+AL+
Sbjct: 388 NTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALA 447

Query: 332 CGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG 391
            G+++HA  ++  L  ++A+ +AL+DMYAKCG +  S+K+F ++  ++++TW  +++ YG
Sbjct: 448 KGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYG 507

Query: 392 AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNK 450
            HG+G+EAI+L   M+  GV+P+ + F++V  ACSH+G+VDEGL+ F  M  DY V P+ 
Sbjct: 508 MHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSS 567

Query: 451 EIYGCVVDLLGRAGRVKEAYELIKSMPFKPDES-VWGPLLGACKEHRLPNLGKLAALRVL 509
           + Y CVVDLLGRAGR+KEAY+L+  MP   +++  W  LLGA + H    +G++AA  ++
Sbjct: 568 DHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLI 627

Query: 510 DLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIAND 569
            L+PN+   Y++L+NIY++ G W++  + R+ M+  G +KE G SWIE  D+V  F+A D
Sbjct: 628 QLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGD 687

Query: 570 KMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
                ++ + G LE L   M +  Y PD  C++H++E
Sbjct: 688 SSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVE 724



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 122/449 (27%), Positives = 224/449 (49%), Gaps = 19/449 (4%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A  L+  Y   G       +FD + ER+ VSW  +I+   SF     A   F  M+   
Sbjct: 48  VANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEN 107

Query: 108 VNPNAFTLSSVLKACKGM---KSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
           V P++FTL SV+ AC  +   + L     VH   +++G E + ++ N+L+ +Y      +
Sbjct: 108 VEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLG-KL 165

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
            +++++      ++ V+W T+++    +      L   +EM+LEGVE + ++ S  + AC
Sbjct: 166 ASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPAC 225

Query: 225 ASTGWVSFGKLIHAAVIKHG-FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           +    +  GK +HA  +K+G    N  V ++++DMYC    +    + FD M ++ +  W
Sbjct: 226 SHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLW 285

Query: 284 NTIIAGYEKS-GSSECLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           N +IAGY ++    E L +F  M +S     N  T   ++ AC    A S  + +H  +V
Sbjct: 286 NAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVV 345

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           +RGLD +  + N L+DMY++ G I  + +IF +M DRDLVTW +M+ GY    H ++A+ 
Sbjct: 346 KRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALL 405

Query: 402 LFDEM-----------VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK 450
           L  +M            +  ++P+ I  M +L +C+    + +G +        N+  + 
Sbjct: 406 LLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDV 465

Query: 451 EIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
            +   +VD+  + G ++ + ++   +P K
Sbjct: 466 AVGSALVDMYAKCGCLQMSRKVFDQIPQK 494



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 151/295 (51%), Gaps = 12/295 (4%)

Query: 205 MLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFG-SNLPVMNSILDMYCRFD 263
           M++ G++ + Y+F   ++A A    +  GK IHA V K G+G  ++ V N+++++Y +  
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60

Query: 264 CLSDANQYFDEMTEKDLITWNTIIAG---YEKSGSSECLNMFSKMKSERFSPNCFTFTSI 320
                 + FD ++E++ ++WN++I+    +EK   +  L  F  M  E   P+ FT  S+
Sbjct: 61  DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMA--LEAFRCMLDENVEPSSFTLVSV 118

Query: 321 IAACATLA---ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD 377
           + AC+ L     L  G+QVHA  +R+G + N  + N L+ MY K G ++ S+ +      
Sbjct: 119 VTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGG 177

Query: 378 RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK- 436
           RDLVTW +++     +    EA+E   EMV  GV PD     +VL ACSH  ++  G + 
Sbjct: 178 RDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKEL 237

Query: 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
           +  ++ + +++ N  +   +VD+     +V     +   M F     +W  ++  
Sbjct: 238 HAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGM-FDRKIGLWNAMIAG 291


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/565 (34%), Positives = 328/565 (58%), Gaps = 6/565 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + T L+  Y   G++ EA+ LF  M  RDVV+W  MIAG + +   + A  + ++M    
Sbjct: 146 VCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEG 205

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDN 166
           + PN+ T+  VL      K+L +   +HG  ++   +  + V   L+D+YA C C+    
Sbjct: 206 ICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLY-- 263

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLL-EGVEMNPYSFSIAVRACA 225
           AR +F+ M  +N+VSW+ +I GY  S      L +F +M+L + ++  P +    +RACA
Sbjct: 264 ARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACA 323

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               +S G+ +H  +IK G   ++ + N++L MY +   + DA ++FDEM  KD ++++ 
Sbjct: 324 KLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSA 383

Query: 286 IIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           I++G  ++G++   L++F  M+     P+  T   ++ AC+ LAAL  G   H  ++ RG
Sbjct: 384 IVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRG 443

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
              +  + NALIDMY+KCG IS ++++F+ M   D+V+W +M+IGYG HG G EA+ LF 
Sbjct: 444 FATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFH 503

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRA 463
           +++  G++PD I F+ +L++CSH+GLV EG  +F +M+ D+++ P  E   C+VD+LGRA
Sbjct: 504 DLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRA 563

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G + EA+  I++MPF+PD  +W  LL AC+ H+   LG+  + ++  L P   G +++LS
Sbjct: 564 GLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLS 623

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           NIY+A G+W++ A  R   +  G KK  G SWIE+   V  F+  D+       +   LE
Sbjct: 624 NIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLE 683

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGE 608
            L+  M    Y+ +   +  D+E E
Sbjct: 684 ELLVEMKRLGYQAECSFVFQDVEEE 708



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 143/506 (28%), Positives = 243/506 (48%), Gaps = 14/506 (2%)

Query: 23  KQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTV 82
           K+  Q   K++  +D  ++ K        L + Y     +  AR LFDE+P   V+ W  
Sbjct: 28  KKIHQHFLKNTSNADSSVLHK--------LTRLYLSCNQVVLARRLFDEIPNPSVILWNQ 79

Query: 83  MIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG 142
           +I  Y      + A  ++  M+   V PN +T   VLKAC G+ ++ +   +H  A   G
Sbjct: 80  IIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFG 139

Query: 143 LEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVF 202
           LE  ++V  +L+D YA C I ++  RL F+ M  ++ V+W  +I G +  G     + + 
Sbjct: 140 LESDVFVCTALVDFYAKCGILVEAQRL-FSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLI 198

Query: 203 KEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRF 262
            +M  EG+  N  +    +        +  GK +H   ++  F + + V   +LDMY + 
Sbjct: 199 MQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKC 258

Query: 263 DCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKM-KSERFSPNCFTFTSI 320
            CL  A + FD M  ++ ++W+ +I GY  S    E L +F +M   +   P   T  S+
Sbjct: 259 QCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSV 318

Query: 321 IAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDL 380
           + ACA L  LS G+++H  I++ G   ++ L N L+ MYAKCG I D+ + F EM+ +D 
Sbjct: 319 LRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDS 378

Query: 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS 440
           V++++++ G   +G+   A+ +F  M  SG+ PD    + VL ACSH   +  G      
Sbjct: 379 VSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGY 438

Query: 441 MNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL--P 498
           +       +  I   ++D+  + G++  A E+   M  + D   W  ++     H L   
Sbjct: 439 LIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMD-RHDIVSWNAMIIGYGIHGLGME 497

Query: 499 NLGKLAALRVLDLKPNMMGTYIILSN 524
            LG    L  L LKP+ +    +LS+
Sbjct: 498 ALGLFHDLLALGLKPDDITFICLLSS 523



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 115/429 (26%), Positives = 199/429 (46%), Gaps = 44/429 (10%)

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           +R EV  N   L   L+AC   KSL+ A  +H   +K        V + L  +Y +C   
Sbjct: 3   LRFEVKNNYLHL---LEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCN-Q 58

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +  AR +F+++   + + W  +I  YA +G   G + ++  ML  GV  N Y++   ++A
Sbjct: 59  VVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKA 118

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C+    +  G  IH+     G  S++ V  +++D Y +   L +A + F  M+ +D++ W
Sbjct: 119 CSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAW 178

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N +IAG    G   + + +  +M+ E   PN  T   ++       AL  G+ +H   VR
Sbjct: 179 NAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVR 238

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
           R  D  + +   L+DMYAKC  +  ++KIF  M  R+ V+W++M+ GY A    KEA+EL
Sbjct: 239 RSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALEL 298

Query: 403 FDEMV-KSGVRPDRIVFMAVLTAC-----------------------------------S 426
           FD+M+ K  + P  +   +VL AC                                   +
Sbjct: 299 FDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYA 358

Query: 427 HAGLVDEGLKYFKSMNDYN-VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVW 485
             G++D+ +++F  MN  + V+ +  + GCV +  G A      + +++     PD +  
Sbjct: 359 KCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQN--GNAAVALSIFRMMQLSGIDPDLTTM 416

Query: 486 GPLLGACKE 494
             +L AC  
Sbjct: 417 LGVLPACSH 425



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 112/427 (26%), Positives = 209/427 (48%), Gaps = 37/427 (8%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV-R 105
           ++ T L+  Y     +  AR +FD M  R+ VSW+ MI GY + +C  +A  +F +M+ +
Sbjct: 246 VVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILK 305

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           + ++P   TL SVL+AC  +  LS    +H   IK G    I + N+L+ +YA C + +D
Sbjct: 306 DAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGV-ID 364

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +A   F++M  K+ VS++ +++G   +GN    L +F+ M L G++ +  +    + AC+
Sbjct: 365 DAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACS 424

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               +  G   H  +I  GF ++  + N+++DMY +   +S A + F+ M   D+++WN 
Sbjct: 425 HLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNA 484

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I GY   G   E L +F  + +    P+  TF  ++++C+           H+G+V  G
Sbjct: 485 MIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCS-----------HSGLVMEG 533

Query: 345 LDGNLALAN------------ALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYG 391
                A++              ++D+  + G I ++      M  + D+  W++++    
Sbjct: 534 RLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACR 593

Query: 392 AHGHGKEAIELFDEMVK--SGVRPDRI-VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP 448
            H    + IEL +E+ K    + P+    F+ +    S AG  D+      +  D+ +  
Sbjct: 594 IH----KNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGL-- 647

Query: 449 NKEIYGC 455
            K+I GC
Sbjct: 648 -KKIPGC 653



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 163/331 (49%), Gaps = 21/331 (6%)

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           + AC  +  ++  K IH   +K+   ++  V++ +  +Y   + +  A + FDE+    +
Sbjct: 15  LEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSV 74

Query: 281 ITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           I WN II  Y  +G  +  ++++  M      PN +T+  ++ AC+ L A+  G ++H+ 
Sbjct: 75  ILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSH 134

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
               GL+ ++ +  AL+D YAKCG + ++Q++FS MS RD+V W +M+ G   +G   +A
Sbjct: 135 AKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDA 194

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN---PNKEIYGC- 455
           ++L  +M + G+ P+    + VL     A    + L + K+++ Y V     N  + G  
Sbjct: 195 VQLIMQMQEEGICPNSSTIVGVLPTVGEA----KALGHGKALHGYCVRRSFDNGVVVGTG 250

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA-----CKEHRLPNLGKLAALRVLD 510
           ++D+  +   +  A ++   M  + +E  W  ++G      C +  L    ++       
Sbjct: 251 LLDMYAKCQCLLYARKIFDVMGVR-NEVSWSAMIGGYVASDCMKEALELFDQMI------ 303

Query: 511 LKPNMMGTYIILSNIYAAEGKWEEFAKFRKI 541
           LK  M  T + L ++  A  K  + ++ RK+
Sbjct: 304 LKDAMDPTPVTLGSVLRACAKLTDLSRGRKL 334



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 88/181 (48%), Gaps = 1/181 (0%)

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           +  ++ AC    +L+  +++H   ++   + + ++ + L  +Y  C  +  ++++F E+ 
Sbjct: 11  YLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIP 70

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
           +  ++ W  ++  Y  +G    AI+L+  M+  GVRP++  +  VL ACS    +++G++
Sbjct: 71  NPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE 130

Query: 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR 496
                  + +  +  +   +VD   + G + EA  L  SM  + D   W  ++  C  + 
Sbjct: 131 IHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHR-DVVAWNAMIAGCSLYG 189

Query: 497 L 497
           L
Sbjct: 190 L 190



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 40  LIPKG---PSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQA 96
           LI +G    +++   LI  Y   G I  AR +F+ M   D+VSW  MI GY       +A
Sbjct: 439 LIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEA 498

Query: 97  WTVFVEMVRNEVNPNAFTLSSVLKAC 122
             +F +++   + P+  T   +L +C
Sbjct: 499 LGLFHDLLALGLKPDDITFICLLSSC 524


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 203/600 (33%), Positives = 341/600 (56%), Gaps = 35/600 (5%)

Query: 41  IPKGPSILATNLIKSYFDE-GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTV 99
           IP+ P++ + N I S + + GL+ + + +F+ MP RD VSW + I+GY ++   + A  V
Sbjct: 66  IPQ-PNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRV 124

Query: 100 FVEMVRNE-VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA 158
           +  M+++  +N N  T S++L  C   + +     ++G  +K G    ++V + L+D+Y 
Sbjct: 125 YKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYT 184

Query: 159 TC------------------------------CISMDNARLVFNDMKWKNDVSWTTLITG 188
                                           C  ++ ++ +F  +K ++ +SWT +ITG
Sbjct: 185 KLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITG 244

Query: 189 YAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSN 248
              +G     L +F+EM L G  M+ ++F   + AC S   +  GK IHA VI+     N
Sbjct: 245 LMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDN 304

Query: 249 LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKS 307
           + V ++++DMY +   +  A   F  M +K++I+W  ++ GY ++G S E + +F +M+ 
Sbjct: 305 VFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQR 364

Query: 308 ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISD 367
               P+ FT  S+I++CA LA+L  G Q H   +  GL   + ++NALI +Y KCG+  +
Sbjct: 365 NGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTEN 424

Query: 368 SQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH 427
           S ++F+EM+ RD V+WT+++ GY   G   E I LF+ M+  G++PD + F+ VL+ACS 
Sbjct: 425 SHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSR 484

Query: 428 AGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWG 486
           AGLV++GL+YF+SM  ++ + P  +   C++DLLGRAGR++EA   I +MP  PD   W 
Sbjct: 485 AGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWA 544

Query: 487 PLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546
            LL +C+ H    +GK AA  ++ L+P    +Y++LS++YA++GKW++ A+ R+ MR   
Sbjct: 545 TLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKR 604

Query: 547 SKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
            +KE G SWI+ + KV  F A+D+       +Y  LE L   M E  Y PD+  ++HD+E
Sbjct: 605 VRKEPGYSWIKYKGKVHVFSADDQSSPFLGQIYAELEKLNYKMIEEGYVPDMSSVLHDVE 664



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 121/465 (26%), Positives = 230/465 (49%), Gaps = 68/465 (14%)

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSL---------------------- 153
           +S+LK C   ++ + A  +H + +K   +   ++ N+L                      
Sbjct: 9   ASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQ 68

Query: 154 ---------MDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKE 204
                    + VY+   + +   + +FN M +++ VSW   I+GYA+ G+    + V+K 
Sbjct: 69  PNLFSWNTILSVYSKLGL-LSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKL 127

Query: 205 MLLE-GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFD 263
           ML +  + +N  +FS  +  C+    V  G+ I+  ++K GFGS++ V + ++DMY +  
Sbjct: 128 MLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLG 187

Query: 264 CLSDANQYFDEMTEKDLITWNTIIAGYEKSG----------------------------- 294
            + DA +YFDEM E++++  NT+I G  + G                             
Sbjct: 188 LIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQ 247

Query: 295 ---SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLAL 351
                E L+MF +M+   F+ + FTF S++ AC +L AL  G+Q+HA ++R     N+ +
Sbjct: 248 NGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFV 307

Query: 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411
            +AL+DMY+KC +I  ++ +F  M  +++++WT+M++GYG +G  +EA+++F EM ++GV
Sbjct: 308 GSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGV 367

Query: 412 RPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471
            PD     +V+++C++   ++EG ++        +     +   ++ L G+ G  + ++ 
Sbjct: 368 EPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHR 427

Query: 472 LIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPN 514
           L   M  + DE  W  LL    +    N  +G    +    LKP+
Sbjct: 428 LFTEMNIR-DEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPD 471


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 214/621 (34%), Positives = 337/621 (54%), Gaps = 57/621 (9%)

Query: 44  GPSILATNLIKSYFDE-GLIEEARTLFDEMPER---DVVSWTVMIAGYTSFNCHNQAWTV 99
           G ++   N I + +   G +++A  +FDE+ ER   D+VSW  ++A Y        A  +
Sbjct: 159 GSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRI 218

Query: 100 FVEMVRN---EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDV 156
              M  +   ++ P+A TL ++L AC  + +L +   VHG +++ GL   ++V N+L+ +
Sbjct: 219 AFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSM 278

Query: 157 YATCCISMDNARLVFNDMKWKNDVSWTTLITGY--------------------------- 189
           YA C   M+ A  VF  +K K+ VSW  ++TGY                           
Sbjct: 279 YAKCS-KMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVIT 337

Query: 190 --------AHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
                   A  G+G+  L VF++M L G+E N  + +  +  CAS G + +GK  HA VI
Sbjct: 338 WSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVI 397

Query: 242 KHGFGSN-------LPVMNSILDMYCRFDCLSDANQYFD--EMTEKDLITWNTIIAGYEK 292
           K+    N       L V+N ++DMY +      A   FD  E  +K+++TW  +I GY +
Sbjct: 398 KNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQ 457

Query: 293 SG-SSECLNMFSKMKSERFS--PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN- 348
            G +++ L +F+++  ++ S  PN FT +  + ACA L  L  G+Q+HA  +R   +   
Sbjct: 458 HGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEV 517

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           L + N LIDMY+K G+I  ++ +F  M  R++V+WTS+M GYG HG G+EA+ LFD+M K
Sbjct: 518 LYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQK 577

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVK 467
            G   D I F+ VL ACSH+G+VD+G+ YF  M   + + P  E Y C+VDLLGRAGR+ 
Sbjct: 578 LGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLN 637

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527
           EA ELIK+M  +P   VW  LL A + H    LG+ AA ++ +L     G+Y +LSN+YA
Sbjct: 638 EAMELIKNMSMEPTAVVWVALLSASRIHANIELGEYAASKLTELGAENDGSYTLLSNLYA 697

Query: 528 AEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIR 587
              +W++ A+ R +M+  G +K  G SWI+ +     F   D+    ++ +Y +L  LI+
Sbjct: 698 NARRWKDVARIRSLMKHTGIRKRPGCSWIQGKKSTTTFFVGDRSHPESEQIYNLLLDLIK 757

Query: 588 HMNETAYEPDIDCLIHDLEGE 608
            + +  Y P     +HD++ E
Sbjct: 758 RIKDMGYVPQTSFALHDVDDE 778



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 123/484 (25%), Positives = 236/484 (48%), Gaps = 59/484 (12%)

Query: 53  IKSYFDEGLIEEARTLFDEM-PERDVVSW-TVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
           + +Y + G   EA +L   + P    V W   +I         +     + +M R    P
Sbjct: 66  VGAYIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLP 125

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           + +T   VLKAC  + SL + A VH +    GL  ++++ NS++ +Y  C  ++D+A  +
Sbjct: 126 DHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCG-ALDDAHQM 184

Query: 171 FNDM---KWKNDVSWTTLITGYAHSGNGYGGLGV-FKEMLLEGVEMNPYSFSIA--VRAC 224
           F+++   K ++ VSW +++  Y   G     L + F+      +++ P + ++   + AC
Sbjct: 185 FDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPAC 244

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           AS   +  GK +H   +++G   ++ V N+++ MY +   +++AN+ F+ + +KD+++WN
Sbjct: 245 ASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWN 304

Query: 285 TIIAGYEKSGS------------------------------------SECLNMFSKMKSE 308
            ++ GY + GS                                     E L++F +M+  
Sbjct: 305 AMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLY 364

Query: 309 RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN-------LALANALIDMYAK 361
              PN  T  S+++ CA++ AL  G+Q HA +++  L+ N       L + N LIDMYAK
Sbjct: 365 GLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAK 424

Query: 362 CGNISDSQKIFS--EMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV--KSGVRPDRIV 417
           C +   ++ IF   E  D+++VTWT M+ GY  HG   +A++LF ++   K+ ++P+   
Sbjct: 425 CKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFT 484

Query: 418 FMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIY--GCVVDLLGRAGRVKEAYELIKS 475
               L AC+  G +  G +   +    N N ++ +Y   C++D+  ++G +  A  +  +
Sbjct: 485 LSCALMACARLGELRLG-RQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDN 543

Query: 476 MPFK 479
           M  +
Sbjct: 544 MKLR 547



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 111/349 (31%), Positives = 175/349 (50%), Gaps = 14/349 (4%)

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
           +P    L S+L+ CK   +L NA L H      G        +  +  Y  C  S +   
Sbjct: 27  SPPTIPLISLLRQCK---TLINAKLAHQQIFVHGFTEMF---SYAVGAYIECGASAEAVS 80

Query: 169 LVFNDMKWKNDVSW-TTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           L+   +   + V W   LI      G     LG + +M   G   + Y+F   ++AC   
Sbjct: 81  LLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEI 140

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK---DLITWN 284
             +  G  +HA V  +G GSN+ + NSI+ MY R   L DA+Q FDE+ E+   D+++WN
Sbjct: 141 PSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWN 200

Query: 285 TIIAGYEKSGSSE-CLNMFSKMK---SERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           +I+A Y + G S   L +  +M    S +  P+  T  +I+ ACA++ AL  G+QVH   
Sbjct: 201 SILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFS 260

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           VR GL  ++ + NAL+ MYAKC  ++++ K+F  +  +D+V+W +M+ GY   G    A+
Sbjct: 261 VRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSAL 320

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN 449
            LF  M +  ++ D I + AV+   +  G   E L  F+ M  Y + PN
Sbjct: 321 SLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPN 369


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/599 (35%), Positives = 335/599 (55%), Gaps = 41/599 (6%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108
           A+ +I  Y +  L+ EA  LF  +    V++W  +I  +T  +  ++A   FVEM  +  
Sbjct: 42  ASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGR 101

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA---------- 158
            P+     SVLK+C  M  L     VHG  ++ G++  +Y  N+LM++YA          
Sbjct: 102 CPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKIS 161

Query: 159 -----------------------TCCI--SMDNARLVFNDMKWKNDVSWTTLITGYAHSG 193
                                  TC +   +D+ R VF  M  K+ VS+ T+I GYA SG
Sbjct: 162 VGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSG 221

Query: 194 NGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSF--GKLIHAAVIKHGFGSNLPV 251
                L + +EM     ++ P SF+++      + +V    GK IH  VI+ G  S++ +
Sbjct: 222 MYEDALRMVREM--GTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYI 279

Query: 252 MNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERF 310
            +S++DMY +   + D+ + F  +  +D I+WN+++AGY ++G  +E L +F +M + + 
Sbjct: 280 GSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKV 339

Query: 311 SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQK 370
            P    F+S+I ACA LA L  G+Q+H  ++R G   N+ +A+AL+DMY+KCGNI  ++K
Sbjct: 340 KPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARK 399

Query: 371 IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           IF  M+  D V+WT++++G+  HGHG EA+ LF+EM + GV+P+++ F+AVLTACSH GL
Sbjct: 400 IFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGL 459

Query: 431 VDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           VDE   YF SM   Y +N   E Y  V DLLGRAG+++EAY  I  M  +P  SVW  LL
Sbjct: 460 VDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLL 519

Query: 490 GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKK 549
            +C  H+   L +  A ++  +    MG Y+++ N+YA+ G+W+E AK R  MR  G +K
Sbjct: 520 SSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRK 579

Query: 550 EVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           +   SWIE+++K  GF++ D+       +   L+ ++  M +  Y  D   ++HD++ E
Sbjct: 580 KPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEE 638



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/469 (23%), Positives = 214/469 (45%), Gaps = 45/469 (9%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM 174
           + +++K    +KS S A  +H   I+   +   +   S++    T    +  A L+F  +
Sbjct: 8   IKTLIKNPTRIKSKSQAKQLHAQFIRT--QSLSHTSASIVISIYTNLKLLHEALLLFKTL 65

Query: 175 KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGK 234
           K    ++W ++I  +         L  F EM   G   +   F   +++C     + FG+
Sbjct: 66  KSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGE 125

Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCR-------------FD------------------ 263
            +H  +++ G   +L   N++++MY +             FD                  
Sbjct: 126 SVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAET 185

Query: 264 C-----LSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTF 317
           C     +    + F+ M  KD++++NTIIAGY +SG  E  L M  +M +    P+ FT 
Sbjct: 186 CIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTL 245

Query: 318 TSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD 377
           +S++   +    +  G+++H  ++R+G+D ++ + ++L+DMYAK   I DS+++FS +  
Sbjct: 246 SSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYC 305

Query: 378 RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY 437
           RD ++W S++ GY  +G   EA+ LF +MV + V+P  + F +V+ AC+H   +  G + 
Sbjct: 306 RDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQL 365

Query: 438 FKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL--GACKEH 495
              +       N  I   +VD+  + G +K A ++   M    DE  W  ++   A   H
Sbjct: 366 HGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNV-LDEVSWTAIIMGHALHGH 424

Query: 496 RLPNLGKLAALRVLDLKPNMMGTYIIL---SNIYAAEGKWEEFAKFRKI 541
               +     ++   +KPN +    +L   S++   +  W  F    K+
Sbjct: 425 GHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKV 473



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 144/282 (51%), Gaps = 8/282 (2%)

Query: 12  TFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPS---ILATNLIKSYFDEGLIEEARTL 68
           +F    + PI  + +  +K   I     +I KG      + ++L+  Y     IE++  +
Sbjct: 242 SFTLSSVLPIFSEYVDVIKGKEIHG--YVIRKGIDSDVYIGSSLVDMYAKSARIEDSERV 299

Query: 69  FDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSL 128
           F  +  RD +SW  ++AGY     +N+A  +F +MV  +V P A   SSV+ AC  + +L
Sbjct: 300 FSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATL 359

Query: 129 SNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITG 188
                +HG  ++ G   +I++ ++L+D+Y+ C  ++  AR +F+ M   ++VSWT +I G
Sbjct: 360 HLGKQLHGYVLRGGFGSNIFIASALVDMYSKCG-NIKAARKIFDRMNVLDEVSWTAIIMG 418

Query: 189 YAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIK-HGFGS 247
           +A  G+G+  + +F+EM  +GV+ N  +F   + AC+  G V        ++ K +G   
Sbjct: 419 HALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQ 478

Query: 248 NLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLITWNTIIA 288
            L    ++ D+  R   L +A  +  +M  E     W+T+++
Sbjct: 479 ELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLS 520


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/564 (35%), Positives = 322/564 (57%), Gaps = 3/564 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I+  +L+  Y   G+I EA  +F      +VV W +M+  Y   +   +++ +F +MV  
Sbjct: 280 IIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAA 339

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V PN FT   +L+ C     ++    +H ++IK G E  +YV   L+D+Y+     +D 
Sbjct: 340 GVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGW-LDK 398

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR +   ++ K+ VSWT++I GY         L  FK+M L G+  +    + A+ ACA 
Sbjct: 399 ARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAG 458

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  G+ IH+ V   G+ +++ + N+++++Y R     +A   F+ +  KD ITWN +
Sbjct: 459 IKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGM 518

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           ++G+ +SG   E L +F KM       N FTF S I+A A LA +  G+Q+HA +++ G 
Sbjct: 519 VSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGC 578

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
                +ANALI +Y KCG+I D++  F EMS+R+ V+W +++     HG G EA++LFD+
Sbjct: 579 TSETEVANALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQ 638

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAG 464
           M + G++P+ + F+ VL ACSH GLV+EGL YFKSM +++ ++P  + Y CVVD+LGRAG
Sbjct: 639 MKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAG 698

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           ++  A + ++ MP   +  VW  LL AC+ H+   +G+LAA  +L+L+P+   +Y++LSN
Sbjct: 699 QLDRARKFVEEMPVSANAMVWRTLLSACRVHKNIEIGELAAKYLLELEPHDSASYVLLSN 758

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
            YA  GKW      RK+M+  G +KE G SWIEV++ V  F   D++      +Y  L  
Sbjct: 759 AYAVTGKWACRDHVRKMMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAHQIYKYLAD 818

Query: 585 LIRHMNETAYEPDIDCLIHDLEGE 608
           L   + +  Y      L H+ E E
Sbjct: 819 LDDRLAKIGYIQGNYFLFHEKEKE 842



 Score =  231 bits (589), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 135/463 (29%), Positives = 244/463 (52%), Gaps = 14/463 (3%)

Query: 39  PLIPK----------GPSILATNL-IKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGY 87
           PL+P           G   +A NL I  Y  +GL++ AR +F+++  RD VSW  M++GY
Sbjct: 59  PLVPVIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGY 118

Query: 88  TSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSI 147
                  +A  ++ +M  + V P  + LSSVL AC          LVH    K+G     
Sbjct: 119 ARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSET 178

Query: 148 YVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLL 207
            V N+L+ +Y     S+  A  VF++M + + V++ TLI+ +A  GNG   L +F+EM L
Sbjct: 179 VVGNALIALYLRFG-SLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRL 237

Query: 208 EGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSD 267
            G   +  + +  + ACAS G ++ GK +H+ ++K G   +  +  S+LD+Y +   + +
Sbjct: 238 SGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVE 297

Query: 268 ANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACAT 326
           A + F      +++ WN ++  Y + S  ++  ++F +M +    PN FT+  ++  C  
Sbjct: 298 ALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTY 357

Query: 327 LAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSM 386
              ++ G+Q+H   ++ G + ++ ++  LIDMY+K G +  +++I   +  +D+V+WTSM
Sbjct: 358 AGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSM 417

Query: 387 MIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV 446
           + GY  H   KEA+E F +M   G+ PD I   + ++AC+    + +G +    +     
Sbjct: 418 IAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGY 477

Query: 447 NPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           + +  I+  +V+L  R GR KEA+ L +++  K D+  W  ++
Sbjct: 478 SADVSIWNALVNLYARCGRSKEAFSLFEAIEHK-DKITWNGMV 519



 Score =  218 bits (555), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 129/515 (25%), Positives = 250/515 (48%), Gaps = 16/515 (3%)

Query: 14  HCHKIPP---IIKQSLQSVKKSSIQSDPPLIPK--------GPSILATNLIKSYFDEGLI 62
           HC  + P   ++   L +  K+++     L+            +++   LI  Y   G +
Sbjct: 135 HCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSL 194

Query: 63  EEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKAC 122
             A  +F EMP  D V++  +I+ +        A  +F EM  +   P+  T++S+L AC
Sbjct: 195 SLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAAC 254

Query: 123 KGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSW 182
             +  L+    +H   +K G+     +E SL+D+Y  C + ++ A  +F      N V W
Sbjct: 255 ASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVE-ALEIFKSGDRTNVVLW 313

Query: 183 TTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIK 242
             ++  Y    +      +F +M+  GV  N +++   +R C   G ++ G+ IH   IK
Sbjct: 314 NLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIK 373

Query: 243 HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNM 301
            GF S++ V   ++DMY ++  L  A +  + +  KD+++W ++IAGY +     E L  
Sbjct: 374 TGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALET 433

Query: 302 FSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK 361
           F  M+     P+     S I+ACA + A+  GQQ+H+ +   G   ++++ NAL+++YA+
Sbjct: 434 FKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYAR 493

Query: 362 CGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAV 421
           CG   ++  +F  +  +D +TW  M+ G+   G  +EA+E+F +M ++GV+ +   F++ 
Sbjct: 494 CGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSS 553

Query: 422 LTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481
           ++A ++   + +G +   ++         E+   ++ L G+ G +++A      M  +  
Sbjct: 554 ISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNH 613

Query: 482 ESVWGPLLGACKEH--RLPNLGKLAALRVLDLKPN 514
            S W  ++ +C +H   L  L     ++   LKPN
Sbjct: 614 VS-WNTIITSCSQHGWGLEALDLFDQMKQEGLKPN 647



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 122/450 (27%), Positives = 230/450 (51%), Gaps = 6/450 (1%)

Query: 72  MPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG-MKSLSN 130
           M  R   S    + G+ +     +  ++F   VR      +   +  L+ C+G +K    
Sbjct: 1   MTRRAAASLNKSLTGFLAHEDPEKLLSLFAAKVRQCRGLGSVDFACALRECRGSVKHWPL 60

Query: 131 AALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYA 190
             ++H  AI  GL       N L+D+YA   + +  AR VF  +  +++VSW  +++GYA
Sbjct: 61  VPVIHAKAITCGLGEDRIAGNLLIDLYAKKGL-VQRARRVFEQLSARDNVSWVAMLSGYA 119

Query: 191 HSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLP 250
            +G G   +G++ +M   GV   PY  S  + AC        G+L+HA V K G  S   
Sbjct: 120 RNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETV 179

Query: 251 VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSER 309
           V N+++ +Y RF  LS A + F EM   D +T+NT+I+ + + G+ E  L +F +M+   
Sbjct: 180 VGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSG 239

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
           ++P+C T  S++AACA++  L+ G+Q+H+ +++ G+  +  +  +L+D+Y KCG I ++ 
Sbjct: 240 WTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEAL 299

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
           +IF      ++V W  M++ YG      ++ +LF +MV +GVRP+   +  +L  C++AG
Sbjct: 300 EIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAG 359

Query: 430 LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
            ++ G +            +  + G ++D+  + G + +A  +++ +  K D   W  ++
Sbjct: 360 EINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAK-DVVSWTSMI 418

Query: 490 GACKEHRL--PNLGKLAALRVLDLKPNMMG 517
               +H      L     +++  + P+ +G
Sbjct: 419 AGYVQHEFCKEALETFKDMQLFGIWPDNIG 448


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 217/622 (34%), Positives = 340/622 (54%), Gaps = 67/622 (10%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPER---DVVSWTVMIAGYTSFNCHNQAWTVFVEM----- 103
           L+  Y   G +E+A  +FDE+  +   DV+SW  ++A +   +    A  +F EM     
Sbjct: 190 LVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVH 249

Query: 104 --VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
               NE   +  ++ ++L AC  +K+L     +H  AI+ G     +V N+L+D YA C 
Sbjct: 250 EKATNE-RSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCG 308

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGN--------------------------- 194
            SM++A  VFN M++K+ VSW  ++TGY  SGN                           
Sbjct: 309 -SMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVI 367

Query: 195 -GYG-------GLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFG 246
            GY         L  F++M+L+G E N  +    + ACAS G +S G  IHA  +K    
Sbjct: 368 AGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLL 427

Query: 247 S------------NLPVMNSILDMYCRFDCLSDANQYFDEMT--EKDLITWNTIIAGYEK 292
           S            +L V N+++DMY +      A   FD +   E++++TW  +I GY +
Sbjct: 428 SLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQ 487

Query: 293 SG-SSECLNMFSKMKSERFS--PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL--DG 347
            G S++ L +FS+M S+ ++  PN +T + I+ ACA LAAL  G+Q+HA + R       
Sbjct: 488 YGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPS 547

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
              +AN LIDMY+KCG++  ++ +F  M  R+ V+WTSMM GYG HG GKEA+++FD+M 
Sbjct: 548 VYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQ 607

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRV 466
           K+G  PD I F+ +L ACSH+G+VD+GL YF  M  DY+V  + E Y CV+DLL R GR+
Sbjct: 608 KAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRL 667

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            +A++ I+ MP +P   +W  LL AC+ H    L + A  +++++K    G+Y ++SNIY
Sbjct: 668 DKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAEYALNKLVNMKAENDGSYTLISNIY 727

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           A   +W++ A+ R++M+  G KK  G SW++ +     F   D+    +  +Y +LE LI
Sbjct: 728 ANARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLI 787

Query: 587 RHMNETAYEPDIDCLIHDLEGE 608
             +    Y P+ +  +HD++ E
Sbjct: 788 GRIKVMGYVPETNFALHDVDDE 809



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 139/516 (26%), Positives = 248/516 (48%), Gaps = 69/516 (13%)

Query: 45  PSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
           P  L T ++ SY   G  ++A ++ + +     V W +++  +      ++A  V   M+
Sbjct: 82  PKSLGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRML 141

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
           R    P+ FTL   LKAC  + S      +HG+    G E +++V N+L+ +Y+ C  S+
Sbjct: 142 RAGTKPDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCG-SL 200

Query: 165 DNARLVFNDMKWK---NDVSWTTLITGYAHSGNGYGGLGVFKE--MLLEGVEMNPYSFSI 219
           ++A LVF+++  K   + +SW +++  +    N    L +F E  M++     N  S  I
Sbjct: 201 EDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDII 260

Query: 220 AV----RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM 275
           ++     ACAS   +   K IH+  I++G  ++  V N+++D Y +   ++DA + F+ M
Sbjct: 261 SIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVM 320

Query: 276 TEKDLITWNTIIAGYEKSG------------------------------------SSECL 299
             KD+++WN ++ GY +SG                                    S E L
Sbjct: 321 EFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEAL 380

Query: 300 NMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL------------DG 347
           + F +M  +   PN  T  S+++ACA+L ALS G ++HA  +++ L              
Sbjct: 381 DAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGE 440

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEM--SDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           +L + NALIDMY+KC +   ++ IF  +   +R++VTWT M+ GY  +G   +A+++F E
Sbjct: 441 DLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSE 500

Query: 406 MVKS--GVRPDRIVFMAVLTACSHAGLVDEGLK---YFKSMNDYNVNPNKE-IYGCVVDL 459
           M+     V P+      +L AC+H   +  G +   Y    ++Y   P+   +  C++D+
Sbjct: 501 MISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEY--EPSVYFVANCLIDM 558

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
             + G V  A  +  SMP K +E  W  ++     H
Sbjct: 559 YSKCGDVDTARNVFDSMP-KRNEVSWTSMMSGYGMH 593



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 45  PSI--LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           PS+  +A  LI  Y   G ++ AR +FD MP+R+ VSWT M++GY       +A  +F +
Sbjct: 546 PSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDK 605

Query: 103 MVRNEVNPNAFTLSSVLKAC 122
           M +    P+  +   +L AC
Sbjct: 606 MQKAGFVPDDISFLVLLYAC 625


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1047

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 201/549 (36%), Positives = 308/549 (56%), Gaps = 3/549 (0%)

Query: 62  IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121
           IE A   F E    +VV W VM+  Y   +    ++ +F +M   E+ PN +T  S+LK 
Sbjct: 423 IETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKT 482

Query: 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS 181
           C  +  L     +H   IK   + + YV + L+D+YA     +D A  +      K+ VS
Sbjct: 483 CIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLG-KLDTAWDILIRFAGKDVVS 541

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           WTT+I GY         L  F++ML  G+  +    + AV ACA    +  G+ IHA   
Sbjct: 542 WTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQAC 601

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLN 300
             GF S+LP  N+++ +Y +   + +A   F++    D I WN +++G+++SG++E  L 
Sbjct: 602 VSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALR 661

Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360
           +F++M  E    N FTF S + A +  A +  G+QVHA I + G D    + NA+I MYA
Sbjct: 662 VFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYA 721

Query: 361 KCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420
           KCG+ISD++K F E+S ++ V+W +M+  Y  HG G EA++ FD+M+ S VRP+ +  + 
Sbjct: 722 KCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVG 781

Query: 421 VLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
           VL+ACSH GLVD+G++YF+SMN +Y + P  E Y CVVD+L RAG +  A + I  MP +
Sbjct: 782 VLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIE 841

Query: 480 PDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFR 539
           PD  VW  LL AC  H+   +G+ AA  +L+L+P    TY++LSN+YA   KW+     R
Sbjct: 842 PDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVCRKWDARDLTR 901

Query: 540 KIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDID 599
           + M+  G KKE G SWIEV++ +  F   D+       ++   + L +  +E  Y  D  
Sbjct: 902 QKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFKDLTKRASEIGYVQDCF 961

Query: 600 CLIHDLEGE 608
            L+ +L+ E
Sbjct: 962 SLLSELQQE 970



 Score =  228 bits (580), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 129/450 (28%), Positives = 227/450 (50%), Gaps = 3/450 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           +I+   LI  Y   G ++ AR +FD +  +D  SW  MI+G +   C  +A  +F +M  
Sbjct: 205 TIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYV 264

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             + P  +  SSVL ACK ++SL     +HG+ +K G     YV N+L+ +Y     S+ 
Sbjct: 265 LGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLG-SLI 323

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +A  +F++M  ++ V++ TLI G +  G G   + +FK M L+G+E +  + +  V AC+
Sbjct: 324 SAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACS 383

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           S G +  G+ +HA   K GF SN  +  ++L++Y +   +  A  YF E   ++++ WN 
Sbjct: 384 SDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNV 443

Query: 286 IIAGYE-KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           ++  Y           +F +M+ E   PN +T+ SI+  C  L  L  G+Q+H+ I++  
Sbjct: 444 MLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTS 503

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
              N  + + LIDMYAK G +  +  I    + +D+V+WT+M+ GY  +    +A+  F 
Sbjct: 504 FQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFR 563

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
           +M+  G+R D +     ++AC+    + EG +          + +      +V L  + G
Sbjct: 564 QMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCG 623

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKE 494
            ++EAY L        D   W  L+   ++
Sbjct: 624 NIEEAY-LAFEQTEAGDNIAWNALVSGFQQ 652



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 125/465 (26%), Positives = 231/465 (49%), Gaps = 4/465 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L+  L+  Y  +G ++ A  +FDEMPER + +W  MI    S +   + + +F  MV   
Sbjct: 105 LSEKLLDFYLFKGDLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNEN 164

Query: 108 VNPNAFTLSSVLKACKGMK-SLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           V PN  T S VL+AC+G   +      +H   I +GL  S  V N L+D+Y+     +D 
Sbjct: 165 VTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGF-VDR 223

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR VF+ +  K+  SW  +I+G + +      + +F +M + G+   PY+FS  + AC  
Sbjct: 224 ARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKK 283

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  G+ +H  V+K GF S+  V N+++ +Y     L  A   F  M+++D +T+NT+
Sbjct: 284 IESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTL 343

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I G  + G  E  + +F +M+ +   P+  T  S++ AC++   L  GQQ+HA   + G 
Sbjct: 344 INGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGF 403

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             N  +  AL+++YAKC +I  +   F E    ++V W  M++ YG     + +  +F +
Sbjct: 404 ASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQ 463

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M    + P++  + ++L  C   G ++ G +    +   +   N  +   ++D+  + G+
Sbjct: 464 MQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGK 523

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD 510
           +  A++++     K D   W  ++    ++   +       ++LD
Sbjct: 524 LDTAWDILIRFAGK-DVVSWTTMIAGYTQYNFDDKALTTFRQMLD 567



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 179/366 (48%), Gaps = 6/366 (1%)

Query: 108 VNPNAFTLSSVLKAC-KGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           + PN  TL  +L+ C K   SL     +H   +K G + +  +   L+D Y      +D 
Sbjct: 63  IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKG-DLDG 121

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  VF++M  +   +W  +I   A          +F  M+ E V  N  +FS  + AC  
Sbjct: 122 ALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRG 181

Query: 227 TGWVSFG--KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
            G V+F   + IHA +I  G G +  V N ++D+Y R   +  A + FD +  KD  +W 
Sbjct: 182 -GSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWV 240

Query: 285 TIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +I+G  K+    E + +F  M      P  + F+S+++AC  + +L  G+Q+H  +++ 
Sbjct: 241 AMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKL 300

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G   +  + NAL+ +Y   G++  ++ IFS MS RD VT+ +++ G    G+G++A+ELF
Sbjct: 301 GFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELF 360

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
             M   G+ PD     +++ ACS  G +  G +            N +I G +++L  + 
Sbjct: 361 KRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKC 420

Query: 464 GRVKEA 469
             ++ A
Sbjct: 421 SDIETA 426



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 112/240 (46%), Gaps = 3/240 (1%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+  Y   G IEEA   F++    D ++W  +++G+     + +A  VF  M R  ++ N
Sbjct: 615 LVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSN 674

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
            FT  S +KA     ++     VH +  K G +    V N+++ +YA C  S+ +A+  F
Sbjct: 675 NFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCG-SISDAKKQF 733

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
            ++  KN+VSW  +I  Y+  G G   L  F +M+   V  N  +    + AC+  G V 
Sbjct: 734 LELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVD 793

Query: 232 FG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLITWNTIIAG 289
            G +   +   ++G          ++DM  R   LS A  +  EM  E D + W T+++ 
Sbjct: 794 KGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLSA 853


>gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 813

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/523 (36%), Positives = 315/523 (60%), Gaps = 3/523 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+  Y   G  + ++ +FDE+ ER+V+SW  +I  ++    +  A  VF  M+   + PN
Sbjct: 282 LVDVYGKCGSEKASKKVFDEIDERNVISWNAIITSFSFRGKYMDALDVFRLMIDEGMRPN 341

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
           + T+SS+L     +        VHG ++K  +E  +++ NSL+D+YA    S   A  +F
Sbjct: 342 SVTISSMLPVLGELGLFKLGMEVHGFSLKMAIESDVFISNSLIDMYAKSG-SSRIASTIF 400

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           N M  +N VSW  +I  +A +   Y  + + ++M  +G   N  +F+  + ACA  G+++
Sbjct: 401 NKMGVRNIVSWNAMIANFARNRLEYEAVELVRQMQAKGETPNNVTFTNVLPACARLGFLN 460

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            GK IHA +I+ G   +L V N++ DMY +  CL+ A   F+ ++ +D +++N +I GY 
Sbjct: 461 VGKEIHARIIRVGSSLDLFVSNALTDMYSKCGCLNLAQNVFN-ISVRDEVSYNILIIGYS 519

Query: 292 KSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           ++  S E L +FS+M+     P+  +F  +++ACA LA +  G+++H  +VR+    +L 
Sbjct: 520 RTNDSLESLRLFSEMRLLGMRPDIVSFMGVVSACANLAFIRQGKEIHGLLVRKLFHTHLF 579

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           +AN+L+D+Y +CG I  + K+F  + ++D+ +W +M++GYG  G    AI LF+ M + G
Sbjct: 580 VANSLLDLYTRCGRIDLATKVFYCIQNKDVASWNTMILGYGMRGELDTAINLFEAMKEDG 639

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470
           V  D + F+AVL+ACSH GL+++G KYFK M D N+ P    Y C+VDLLGRAG ++EA 
Sbjct: 640 VEYDSVSFVAVLSACSHGGLIEKGRKYFKMMCDLNIEPTHTHYACMVDLLGRAGLMEEAA 699

Query: 471 ELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEG 530
           +LI+ +   PD ++WG LLGAC+ H    LG  AA  + +LKP   G YI+LSN+YA   
Sbjct: 700 DLIRGLSIIPDTNIWGALLGACRIHGNIELGLWAAEHLFELKPQHCGYYILLSNMYAEAE 759

Query: 531 KWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGS 573
           +W+E  K R++M+  G+KK  G SW++V D V  F+  +K+ S
Sbjct: 760 RWDEANKVRELMKSRGAKKNPGCSWVQVGDLVHAFLVGEKIDS 802



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 128/503 (25%), Positives = 243/503 (48%), Gaps = 15/503 (2%)

Query: 40  LIPKGPSILATNLIKSYFDEGLIEEARTLFDEMP--ERDVVSWTVMIAGYTSFNCHNQAW 97
            +P+  S+ A+ LI  Y   G    +  LF       R    W  +I   +     +  +
Sbjct: 65  FLPRSVSLCAS-LILQYASFGHPSNSLLLFQHSVAYSRSAFLWNTLIRANSIAGVFD-GF 122

Query: 98  TVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVY 157
             +  MVR  V P+  T   VLK C     +     VHG+A K G +G ++V N+L+  Y
Sbjct: 123 GTYNTMVRAGVKPDECTYPFVLKVCSDFVEVRKGREVHGVAFKLGFDGDVFVGNTLLAFY 182

Query: 158 ATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE--GVEMNPY 215
             C +  D A  VF++M  ++ VSW T+I   +  G     LG F+ M+    G++ +  
Sbjct: 183 GNCGLFGD-AMKVFDEMPERDKVSWNTVIGLCSLHGFYEEALGFFRVMVAAKPGIQPDLV 241

Query: 216 SFSIAVRACASTGWVSFGKLIHAAVIKHG-FGSNLPVMNSILDMYCRFDCLSDANQYFDE 274
           +    +  CA T      +++H   +K G  G ++ V N+++D+Y +      + + FDE
Sbjct: 242 TVVSVLPVCAETEDKVMARIVHCYALKVGLLGGHVKVGNALVDVYGKCGSEKASKKVFDE 301

Query: 275 MTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG 333
           + E+++I+WN II  +   G   + L++F  M  E   PN  T +S++     L     G
Sbjct: 302 IDERNVISWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGLFKLG 361

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
            +VH   ++  ++ ++ ++N+LIDMYAK G+   +  IF++M  R++V+W +M+  +  +
Sbjct: 362 MEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMIANFARN 421

Query: 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIY 453
               EA+EL  +M   G  P+ + F  VL AC+  G ++ G +    +     + +  + 
Sbjct: 422 RLEYEAVELVRQMQAKGETPNNVTFTNVLPACARLGFLNVGKEIHARIIRVGSSLDLFVS 481

Query: 454 GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH-RLPNLGKLAALRVLDLK 512
             + D+  + G +  A  +  ++  + + S    ++G  + +  L +L   + +R+L ++
Sbjct: 482 NALTDMYSKCGCLNLAQNVF-NISVRDEVSYNILIIGYSRTNDSLESLRLFSEMRLLGMR 540

Query: 513 PNM---MGTYIILSNI-YAAEGK 531
           P++   MG     +N+ +  +GK
Sbjct: 541 PDIVSFMGVVSACANLAFIRQGK 563



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 114/411 (27%), Positives = 198/411 (48%), Gaps = 55/411 (13%)

Query: 31  KSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSF 90
           K +I+SD          ++ +LI  Y   G    A T+F++M  R++VSW  MIA +   
Sbjct: 370 KMAIESD--------VFISNSLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMIANFARN 421

Query: 91  NCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVE 150
               +A  +  +M      PN  T ++VL AC  +  L+    +H   I+ G    ++V 
Sbjct: 422 RLEYEAVELVRQMQAKGETPNNVTFTNVLPACARLGFLNVGKEIHARIIRVGSSLDLFVS 481

Query: 151 NSLMDVYATC-CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG 209
           N+L D+Y+ C C+++  A+ VFN +  +++VS+  LI GY+ + +    L +F EM L G
Sbjct: 482 NALTDMYSKCGCLNL--AQNVFN-ISVRDEVSYNILIIGYSRTNDSLESLRLFSEMRLLG 538

Query: 210 VEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDAN 269
           +  +  SF   V ACA+  ++  GK IH  +++  F ++L V NS+LD+Y R   +  A 
Sbjct: 539 MRPDIVSFMGVVSACANLAFIRQGKEIHGLLVRKLFHTHLFVANSLLDLYTRCGRIDLAT 598

Query: 270 QYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLA 328
           + F  +  KD+ +WNT+I GY   G  +  +N+F  MK +    +  +F ++++AC+   
Sbjct: 599 KVFYCIQNKDVASWNTMILGYGMRGELDTAINLFEAMKEDGVEYDSVSFVAVLSACS--- 655

Query: 329 ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDL----VTWT 384
                   H G++ +G                        +K F  M D ++      + 
Sbjct: 656 --------HGGLIEKG------------------------RKYFKMMCDLNIEPTHTHYA 683

Query: 385 SMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGL 435
            M+   G  G  +EA +L   +    + PD  ++ A+L AC   G ++ GL
Sbjct: 684 CMVDLLGRAGLMEEAADLIRGL---SIIPDTNIWGALLGACRIHGNIELGL 731



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 100/410 (24%), Positives = 193/410 (47%), Gaps = 13/410 (3%)

Query: 94  NQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG-LEGSIYVENS 152
           N  ++ F        NP      ++L+ C    +LS    VH  ++  G L  S+ +  S
Sbjct: 21  NTHFSSFFSTSLQTSNP-----PNLLQLCTLCDTLSQTKQVHAYSLLHGFLPRSVSLCAS 75

Query: 153 LMDVYATCCISMDNARLVFNDMKW-KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVE 211
           L+  YA+     ++  L  + + + ++   W TLI   + +G  + G G +  M+  GV+
Sbjct: 76  LILQYASFGHPSNSLLLFQHSVAYSRSAFLWNTLIRANSIAGV-FDGFGTYNTMVRAGVK 134

Query: 212 MNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQY 271
            +  ++   ++ C+    V  G+ +H    K GF  ++ V N++L  Y       DA + 
Sbjct: 135 PDECTYPFVLKVCSDFVEVRKGREVHGVAFKLGFDGDVFVGNTLLAFYGNCGLFGDAMKV 194

Query: 272 FDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSER--FSPNCFTFTSIIAACATLA 328
           FDEM E+D ++WNT+I      G   E L  F  M + +    P+  T  S++  CA   
Sbjct: 195 FDEMPERDKVSWNTVIGLCSLHGFYEEALGFFRVMVAAKPGIQPDLVTVVSVLPVCAETE 254

Query: 329 ALSCGQQVHAGIVRRGL-DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMM 387
                + VH   ++ GL  G++ + NAL+D+Y KCG+   S+K+F E+ +R++++W +++
Sbjct: 255 DKVMARIVHCYALKVGLLGGHVKVGNALVDVYGKCGSEKASKKVFDEIDERNVISWNAII 314

Query: 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN 447
             +   G   +A+++F  M+  G+RP+ +   ++L      GL   G++         + 
Sbjct: 315 TSFSFRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGLFKLGMEVHGFSLKMAIE 374

Query: 448 PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
            +  I   ++D+  ++G  + A  +   M  +   S W  ++     +RL
Sbjct: 375 SDVFISNSLIDMYAKSGSSRIASTIFNKMGVRNIVS-WNAMIANFARNRL 423


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/559 (34%), Positives = 323/559 (57%), Gaps = 14/559 (2%)

Query: 52  LIKSYFDEGLIEEARTL-----------FDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           L+K    E L+E A  L           F ++ E D  ++ +MI G+T     ++A  +F
Sbjct: 53  LLKPKVAENLLESAAILLPTSMDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLF 112

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
            EM  N V P+ FT   +LK C  +++LS    +H + +K G     +V+N+L+ +YA C
Sbjct: 113 KEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANC 172

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
              ++ AR VF++M  +N  +W ++  GY  SGN    + +F EML   +  +  +    
Sbjct: 173 G-EVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSV 231

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           + AC     +  G+ I+  V + G   N  ++ S++DMY +   +  A + FD+M  +D+
Sbjct: 232 LTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDV 291

Query: 281 ITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           + W+ +I+GY + S   E L++F +M+     PN  T  SI+++CA L AL  G+ VH  
Sbjct: 292 VAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFF 351

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
           I ++ +   + L  AL+D YAKCG++  S ++F +M  +++++WT ++ G  ++G GK+A
Sbjct: 352 IKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKA 411

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVD 458
           +E F  M++  V P+ + F+ VL+ACSHAGLVDEG   F SM+ D+ + P  E YGC+VD
Sbjct: 412 LEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVD 471

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518
           +LGRAG ++EA++ IK+MP +P+  +W  LL +CK H+   +G+ +  +++ L+P   G 
Sbjct: 472 ILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGD 531

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
           YI+LSNIYA+ G+WE+  K R  M+  G KK  G S IE+   +  F A D + S ++ +
Sbjct: 532 YILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHSQSEEI 591

Query: 579 YGVLEMLIRHMNETAYEPD 597
           Y  +E +++ +    Y P+
Sbjct: 592 YNAIEDMMKQIKSAGYVPN 610



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 107/364 (29%), Positives = 197/364 (54%), Gaps = 5/364 (1%)

Query: 118 VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC-ISMDNARLVFNDMKW 176
           +L+ CK ++ L+    +H   IK  L     V  +L++  A     SMD A  +F  +  
Sbjct: 30  ILEQCKTIRDLNE---IHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFRQIDE 86

Query: 177 KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLI 236
            +  ++  +I G+    + +  + +FKEM    V+ + ++F   ++ C+    +S G+ I
Sbjct: 87  PDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQI 146

Query: 237 HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS- 295
           HA ++K GFGS+  V N+++ MY     +  A + FDEM+E+++ TWN++ AGY KSG+ 
Sbjct: 147 HALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNW 206

Query: 296 SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
            E + +F +M       +  T  S++ AC  LA L  G+ ++  +  +GL GN  L  +L
Sbjct: 207 EEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSL 266

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           +DMYAKCG +  ++++F +M  RD+V W++M+ GY      +EA++LF EM K+ + P+ 
Sbjct: 267 VDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNE 326

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKS 475
           I  +++L++C+  G ++ G      +    +     +   ++D   + G V+ + E+   
Sbjct: 327 ITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGK 386

Query: 476 MPFK 479
           MP K
Sbjct: 387 MPVK 390



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 133/249 (53%), Gaps = 3/249 (1%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           KG   L T+L+  Y   G ++ AR LFD+M  RDVV+W+ MI+GY+  +   +A  +F E
Sbjct: 257 KGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHE 316

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M +  ++PN  T+ S+L +C  + +L     VH    K+ ++ ++ +  +LMD YA C  
Sbjct: 317 MQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCG- 375

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
           S++++  VF  M  KN +SWT LI G A +G G   L  F  ML + VE N  +F   + 
Sbjct: 376 SVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLS 435

Query: 223 ACASTGWVSFGKLIHAAVIKH-GFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDL 280
           AC+  G V  G+ +  ++ +  G    +     ++D+  R   + +A Q+   M  + + 
Sbjct: 436 ACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNA 495

Query: 281 ITWNTIIAG 289
           + W T++A 
Sbjct: 496 VIWRTLLAS 504


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 213/622 (34%), Positives = 341/622 (54%), Gaps = 69/622 (11%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPER---DVVSWTVMIAGYTSFNCHNQAWTVF-----VEM 103
           L+  Y   G +EEA  +FDE+ +R   DV+SW  +++ +      + AWT       + +
Sbjct: 158 LVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVK---SSNAWTALDLFSKMTL 214

Query: 104 VRNEVNPNA----FTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
           + +E   N      ++ ++L AC  +K++     VHG AI+ G    ++V N+L+D YA 
Sbjct: 215 IVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAK 274

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGN------------------------- 194
           C + M+NA  VFN M++K+ VSW  ++ GY+ SGN                         
Sbjct: 275 CGL-MENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTA 333

Query: 195 ---GYG-------GLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH- 243
              GY         L VF++M+  G   N  +    + ACAS G  S G  IHA  +K+ 
Sbjct: 334 VIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNC 393

Query: 244 ---------GFGSNLPVMNSILDMYCRFDCLSDANQYFDE--MTEKDLITWNTIIAGYEK 292
                    G   +L V N+++DMY +      A   FD+  + E++++TW  +I G+ +
Sbjct: 394 LLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQ 453

Query: 293 SG-SSECLNMFSKMKSERF--SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
            G S++ L +F +M SE +  +PN +T + I+ ACA LAA+  G+Q+HA ++R     + 
Sbjct: 454 YGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSS 513

Query: 350 A--LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           A  +AN LI+MY+KCG++  ++ +F  MS +  ++WTSMM GYG HG G EA+++FD+M 
Sbjct: 514 AYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMR 573

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRV 466
           K+G  PD I F+ VL ACSH G+VD+GL YF SM+ DY + P  E Y   +DLL R GR+
Sbjct: 574 KAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRL 633

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            +A++ +K MP +P   VW  LL AC+ H    L + A  +++++     G+Y ++SNIY
Sbjct: 634 DKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIY 693

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           A  G+W++ A+ R +M+  G KK  G SW++ +     F   D+    +  +Y +LE LI
Sbjct: 694 ATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLI 753

Query: 587 RHMNETAYEPDIDCLIHDLEGE 608
             +    Y P+ +  +HD++ E
Sbjct: 754 DRIKAMGYVPETNFALHDVDEE 775



 Score =  194 bits (494), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 137/507 (27%), Positives = 243/507 (47%), Gaps = 68/507 (13%)

Query: 39  PLIPKGPSI----LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHN 94
           P +P  P I    L T ++ SY   G  + A  + + +     V W ++I  +      +
Sbjct: 40  PALPSEPFISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLD 99

Query: 95  QAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLM 154
            A  V   M+R     + FTL  VLKAC  + S    +  HG+    G E ++++ N+L+
Sbjct: 100 SAINVSCRMLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALV 159

Query: 155 DVYATCCISMDNARLVFNDMKWK---NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVE 211
            +Y+ C  S++ A ++F+++  +   + +SW ++++ +  S N +  L +F +M L   E
Sbjct: 160 AMYSRCG-SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHE 218

Query: 212 --MNPYSFSIAV----RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCL 265
              N  S  I++     AC S   V   K +H   I++G   ++ V N+++D Y +   +
Sbjct: 219 KPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLM 278

Query: 266 SDANQYFDEMTEKDLITWNTIIAGYEKSG------------------------------- 294
            +A + F+ M  KD+++WN ++AGY +SG                               
Sbjct: 279 ENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGY 338

Query: 295 -----SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR------ 343
                S E LN+F +M      PNC T  S+++ACA+L A S G ++HA  ++       
Sbjct: 339 SQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLD 398

Query: 344 ----GLDGNLALANALIDMYAKCGNISDSQKIFSE--MSDRDLVTWTSMMIGYGAHGHGK 397
               G D +L + NALIDMY+KC +   ++ IF +  + +R++VTWT M+ G+  +G   
Sbjct: 399 NDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSN 458

Query: 398 EAIELFDEMVKS--GVRPDRIVFMAVLTACSHAGLVDEGLK---YFKSMNDYNVNPNKEI 452
           +A++LF EM+    GV P+      +L AC+H   +  G +   Y    + Y+ +    +
Sbjct: 459 DALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYD-SSAYFV 517

Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFK 479
             C++++  + G V  A  +  SM  K
Sbjct: 518 ANCLINMYSKCGDVDTARHVFDSMSQK 544



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A  LI  Y   G ++ AR +FD M ++  +SWT M+ GY      ++A  +F +M +  
Sbjct: 517 VANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAG 576

Query: 108 VNPNAFTLSSVLKAC 122
             P+  T   VL AC
Sbjct: 577 FVPDDITFLVVLYAC 591


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/565 (34%), Positives = 327/565 (57%), Gaps = 5/565 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + +++I      G I EA+ +FD MP +DVV W  +I GY    C + A+ +F EM  +
Sbjct: 166 FVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGS 225

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + P+  T++S+++AC G+ +L     +HG  +  GL   I V  S +D+Y+     +++
Sbjct: 226 GIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMG-DIES 284

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR VF  M  +N VSW  +I+G   +G       +F  ++      +  +    ++ C+ 
Sbjct: 285 ARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQ 344

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
           T  ++ GK++H   I+  F SNL +  +I+D+Y +   L  A   F+ M ++++ITW  +
Sbjct: 345 TASLATGKILHGCAIR-SFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAM 403

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           + G  ++G +E  L +F++M+ E  + N  TF S++ +CA L +L  G+ +H  + R G 
Sbjct: 404 LVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGF 463

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEAIELFD 404
             ++    AL+DMYAKCG I+ +++IFS  S  +D+V W SM+ GYG HGHG +A+ ++ 
Sbjct: 464 AFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYH 523

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRA 463
           +M++ G++P++  F+++L+ACSH+ LV++G+  F SM  D+N+ P ++ Y C+VDLL RA
Sbjct: 524 KMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSRA 583

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           GR +EA  LI+ MPF+P  +V   LL  C+ H+  NLG   + ++L L     G YI+LS
Sbjct: 584 GRFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDAMNPGIYIMLS 643

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           NIYA   +W++    R +MR  G KK  G S +E  + V  F A D    + + +Y  LE
Sbjct: 644 NIYAEARRWDKVDYIRGLMRNRGLKKTPGYSLVETGNWVHTFFAGDNSHPNWEEIYHFLE 703

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGE 608
            L   +  + Y PD  C++ D++ E
Sbjct: 704 SLRSAVETSGYVPDTSCVLRDVDEE 728



 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 120/490 (24%), Positives = 245/490 (50%), Gaps = 12/490 (2%)

Query: 16  HKIPPIIKQSLQSVKKSS-----IQSDPPLIPKGP----SILATNLIKSYFDEGLIEEAR 66
           +++P II   L  +++SS     ++S    I          +AT L+K+Y D   +E AR
Sbjct: 25  NQLPTIIHNFLSLLRESSKNLIWVKSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAAR 84

Query: 67  TLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMK 126
            +FD+  +   +    M+ GY     + +   +F  M    +  ++ + +  LKAC    
Sbjct: 85  YVFDQFFQPKGLLCNAMLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSL 144

Query: 127 SLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLI 186
                  +   A+++G+E + +V +S++         +  A+ VF+ M  K+ V W ++I
Sbjct: 145 DYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFG-KIGEAQRVFDGMPNKDVVCWNSII 203

Query: 187 TGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFG 246
            GY  +G       +F EM   G++ +P + +  ++AC   G +  GK +H  V+  G G
Sbjct: 204 GGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLG 263

Query: 247 SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKM 305
           +++ V+ S +DMY +   +  A   F +M  ++L++WN +I+G  ++G   E  ++F ++
Sbjct: 264 NDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRL 323

Query: 306 KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNI 365
                  +  T  S++  C+  A+L+ G+ +H G   R  + NL L+ A++D+Y+KCG++
Sbjct: 324 VRSSGGFDLTTIVSLLQGCSQTASLATGKILH-GCAIRSFESNLILSTAIVDLYSKCGSL 382

Query: 366 SDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTAC 425
             +  +F+ M DR+++TWT+M++G   +GH ++A+ LF +M + G+  + + F++++ +C
Sbjct: 383 KQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSC 442

Query: 426 SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVW 485
           +H G +  G      +       +      +VD+  + G++  A  +        D  +W
Sbjct: 443 AHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLW 502

Query: 486 GPLLGACKEH 495
             ++     H
Sbjct: 503 NSMITGYGMH 512



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 127/274 (46%), Gaps = 13/274 (4%)

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
           WV   K  HA +I +   ++  V   ++  Y     L  A   FD+  +   +  N ++ 
Sbjct: 47  WV---KSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLC 103

Query: 289 GYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           GY +SG   E L +F  M+S     +  + T  + ACA+      G ++ +  V +G++ 
Sbjct: 104 GYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEK 163

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           N  + +++I    K G I ++Q++F  M ++D+V W S++ GY   G    A +LF EM 
Sbjct: 164 NRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMH 223

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDY----NVNPNKEIYGCVVDLLGRA 463
            SG++P  I   +++ AC   G     LK  K M+ Y     +  +  +    VD+  + 
Sbjct: 224 GSGIKPSPITMTSLIQACGGIG----NLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKM 279

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
           G ++ A  +   MP +   S W  ++  C  + L
Sbjct: 280 GDIESARWVFYKMPTRNLVS-WNAMISGCVRNGL 312


>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
 gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
          Length = 839

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/552 (34%), Positives = 314/552 (56%), Gaps = 3/552 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++ T ++  Y     + +AR  F  +P   V +   M+ G        +A  +F  M R+
Sbjct: 273 VVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRTGLGAEALQLFQFMTRS 332

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            +  +  +LS V  AC  +K       VH +AIK G +  + V N+++D+Y  C  ++  
Sbjct: 333 GIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVDVCVRNAILDLYGKC-KALVE 391

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A LVF +M+ ++ VSW  +I     +      +    EML  G+E + +++   ++ACA 
Sbjct: 392 AYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRYGMEPDDFTYGSVLKACAG 451

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              + +G ++H   IK G G +  V ++++DMYC+   +++A +  D +  ++L++WN+I
Sbjct: 452 LQSLEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEAQKLHDRIGGQELVSWNSI 511

Query: 287 IAGYE-KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+G+     S E    FS+M      P+ FT+ +++  CA LA +  G+Q+H  I+++ +
Sbjct: 512 ISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEM 571

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
            G+  +++ L+DMYAKCGN+ DS  +F +    D V+W +M+ GY  HG G EA+E+F+ 
Sbjct: 572 LGDEYISSTLVDMYAKCGNMPDSLLMFEKAQKLDFVSWNAMICGYALHGQGFEALEMFER 631

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAG 464
           M ++ V P+   F+AVL ACSH GL+D+G +YF  M   Y + P  E + C+VD+LGR+ 
Sbjct: 632 MQQANVVPNHATFVAVLRACSHVGLLDDGCRYFYLMTSRYKLEPQLEHFACMVDILGRSK 691

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
             +EA + I+SMP + D  +W  LL  CK  +   + + AA  VL L P+    YI+LSN
Sbjct: 692 GPQEALKFIRSMPLEADAVIWKTLLSICKIRQDVEVAETAASNVLRLDPDDSSVYILLSN 751

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           +YA  GKW + ++ R++MR    KKE G SWIEV+ ++ GF+A DK+   ++ VY +L  
Sbjct: 752 VYAESGKWVDVSRTRRLMRQGRLKKEPGCSWIEVQSEMHGFLAGDKVHPRSREVYEMLNN 811

Query: 585 LIRHMNETAYEP 596
           LI  M  + YEP
Sbjct: 812 LIVEMKLSGYEP 823



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 119/434 (27%), Positives = 223/434 (51%), Gaps = 2/434 (0%)

Query: 40  LIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTV 99
           ++P   ++    ++ +Y   G    A +LF  MP+ DVVSW  +++GY        +  +
Sbjct: 64  VMPHRDTVSWNTMLTAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGL 123

Query: 100 FVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
            VEM R  V P+  TL+ +LKAC G++ L+    +H +A+K GLE  +   ++L+D+Y  
Sbjct: 124 SVEMARRGVAPDRTTLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGK 183

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
            C S+++A   F+ M  +N VSW   I G   +     GL +F +M   G+ ++  +++ 
Sbjct: 184 -CRSLEDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYAS 242

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
             R+CA+   +S  + +HA  IK+ F ++  V  +I+D+Y + D L DA + F  +    
Sbjct: 243 VFRSCAAITCLSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHT 302

Query: 280 LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           +   N ++ G  ++G  +E L +F  M       +  + + + +ACA +     G QVH 
Sbjct: 303 VQACNAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHC 362

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
             ++ G D ++ + NA++D+Y KC  + ++  +F EM  RD V+W +++     +   ++
Sbjct: 363 LAIKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYED 422

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVD 458
            I   +EM++ G+ PD   + +VL AC+    ++ G           +  +  +   VVD
Sbjct: 423 TIAYLNEMLRYGMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVVD 482

Query: 459 LLGRAGRVKEAYEL 472
           +  + G + EA +L
Sbjct: 483 MYCKCGMITEAQKL 496



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 106/420 (25%), Positives = 199/420 (47%), Gaps = 44/420 (10%)

Query: 114 TLSSVLKACKGM--KSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
           T S + + C G    +L+     H   +  G   + +V N L+ +YA C     +AR VF
Sbjct: 4   TFSHLYQLCAGAGRSALATGQAAHARMLVSGFMPTTFVSNCLLQMYARCG-GAAHARGVF 62

Query: 172 NDMKWKNDVSWTTLITGYAHSGN------------------------GYGGLGVFK---- 203
           + M  ++ VSW T++T YAH+G+                        GY   G+F+    
Sbjct: 63  DVMPHRDTVSWNTMLTAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVG 122

Query: 204 ---EMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYC 260
              EM   GV  +  + ++ ++AC     ++ G  IHA  +K G   ++   ++++DMY 
Sbjct: 123 LSVEMARRGVAPDRTTLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYG 182

Query: 261 RFDCLSDANQYFDEMTEKDLITWNTIIAG-YEKSGSSECLNMFSKMKSERFSPNCFTFTS 319
           +   L DA ++F  M E++ ++W   IAG  +    +  L +F +M+      +   + S
Sbjct: 183 KCRSLEDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYAS 242

Query: 320 IIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD 379
           +  +CA +  LS  +Q+HA  ++     +  +  A++D+YAK  ++ D+++ F  + +  
Sbjct: 243 VFRSCAAITCLSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHT 302

Query: 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY-- 437
           +    +MM+G    G G EA++LF  M +SG+  D +    V +AC+      +GL+   
Sbjct: 303 VQACNAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHC 362

Query: 438 --FKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
              KS  D +V     +   ++DL G+   + EAY + + M  + D   W  ++ A +++
Sbjct: 363 LAIKSGFDVDVC----VRNAILDLYGKCKALVEAYLVFQEME-QRDSVSWNAIIAALEQN 417



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 126/245 (51%), Gaps = 3/245 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + +++ ++  Y   G+I EA+ L D +  +++VSW  +I+G++      +A   F EM+ 
Sbjct: 474 AFVSSTVVDMYCKCGMITEAQKLHDRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLD 533

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             V P+ FT ++VL  C  + ++     +HG  IK+ + G  Y+ ++L+D+YA C  +M 
Sbjct: 534 IGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCG-NMP 592

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           ++ L+F   +  + VSW  +I GYA  G G+  L +F+ M    V  N  +F   +RAC+
Sbjct: 593 DSLLMFEKAQKLDFVSWNAMICGYALHGQGFEALEMFERMQQANVVPNHATFVAVLRACS 652

Query: 226 STGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLITW 283
             G +  G +  +    ++     L     ++D+  R     +A ++   M  E D + W
Sbjct: 653 HVGLLDDGCRYFYLMTSRYKLEPQLEHFACMVDILGRSKGPQEALKFIRSMPLEADAVIW 712

Query: 284 NTIIA 288
            T+++
Sbjct: 713 KTLLS 717



 Score = 45.4 bits (106), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 40/79 (50%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   +++ L+  Y   G + ++  +F++  + D VSW  MI GY       +A  +F  M
Sbjct: 573 GDEYISSTLVDMYAKCGNMPDSLLMFEKAQKLDFVSWNAMICGYALHGQGFEALEMFERM 632

Query: 104 VRNEVNPNAFTLSSVLKAC 122
            +  V PN  T  +VL+AC
Sbjct: 633 QQANVVPNHATFVAVLRAC 651


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/560 (35%), Positives = 319/560 (56%), Gaps = 4/560 (0%)

Query: 52   LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
            LI  Y   G +  ART+F +M E D+VSW  MI+G         +  +FV+++R  + P+
Sbjct: 947  LINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPD 1006

Query: 112  AFTLSSVLKACKGMKSLSN-AALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
             FT++SVL+AC  +    + A  +H  A+K G+    +V  +L+DVY+     M+ A  +
Sbjct: 1007 QFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSG-KMEEAEFL 1065

Query: 171  FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
            F +    +  SW  ++ GY  SG+    L ++  M   G   N  + + A +A      +
Sbjct: 1066 FVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGL 1125

Query: 231  SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
              GK I A V+K GF  +L V++ +LDMY +   +  A + F+E+   D + W T+I+G 
Sbjct: 1126 KQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGC 1185

Query: 291  EKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
             ++G  E  L  +  M+  +  P+ +TF +++ AC+ L AL  G+Q+HA  V+     + 
Sbjct: 1186 VENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDP 1245

Query: 350  ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
             +  +L+DMYAKCGNI D++ +F   +   + +W +M++G   HG+ +EA++ F+EM   
Sbjct: 1246 FVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSR 1305

Query: 410  GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKE 468
            GV PDR+ F+ VL+ACSH+GLV E  + F SM   Y + P  E Y C+VD L RAGR++E
Sbjct: 1306 GVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIRE 1365

Query: 469  AYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA 528
            A ++I SMPF+   S++  LL AC+       GK  A ++L L+P+    Y++LSN+YAA
Sbjct: 1366 AEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAA 1425

Query: 529  EGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRH 588
              +WE  A  R +MR    KK+ G SW+++++KV  F+A D+    T  +Y  +E +++ 
Sbjct: 1426 ANQWENVASARNMMRKANVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKR 1485

Query: 589  MNETAYEPDIDCLIHDLEGE 608
            + E  Y PD D  + D+E E
Sbjct: 1486 IREEGYLPDTDFALVDVEEE 1505



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 130/490 (26%), Positives = 218/490 (44%), Gaps = 39/490 (7%)

Query: 16   HKIPPIIKQSLQSVKKSSIQSDPPLIPK----GPSILATNLIKSYFDEGLIEEARTLFDE 71
            H + P+ K  L S   S+ +S      K        +A  L+  Y   G I EAR LFD 
Sbjct: 728  HTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDG 787

Query: 72   MPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNA 131
            M  RDVV W VM+  Y       +A  +F E  R  + P+  TL ++ +  K  +++   
Sbjct: 788  MGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTLCTLARVVKSKQNVLEW 847

Query: 132  ALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAH 191
             L                    +  Y T     D+     + + W   +SW      +  
Sbjct: 848  QLKQ------------------LKAYGTKLFMYDDDDDGSDVIAWNKTLSW------FLQ 883

Query: 192  SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251
             G  +  +  F +M+   V  +  +F + +   A    +  GK IH  V++ G    + V
Sbjct: 884  RGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSV 943

Query: 252  MNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSEC-LNMFSKMKSERF 310
             N +++MY +   +S A   F +M E DL++WNT+I+G   SG  EC + MF  +     
Sbjct: 944  GNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGL 1003

Query: 311  SPNCFTFTSIIAACATL-AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
             P+ FT  S++ AC++L        Q+HA  ++ G+  +  ++  LID+Y+K G + +++
Sbjct: 1004 LPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAE 1063

Query: 370  KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
             +F      DL +W +MM GY   G   +A+ L+  M +SG R ++I       A    G
Sbjct: 1064 FLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAA--GG 1121

Query: 430  LVDEGLKYFKSMNDYNV----NPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVW 485
            LV  GLK  K +    V    N +  +   V+D+  + G ++ A  +   +P  PD+  W
Sbjct: 1122 LV--GLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIP-SPDDVAW 1178

Query: 486  GPLLGACKEH 495
              ++  C E+
Sbjct: 1179 TTMISGCVEN 1188



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 122/448 (27%), Positives = 211/448 (47%), Gaps = 49/448 (10%)

Query: 1    MRTKRLLSYAATFHCHKIPPI-----IKQSLQSVKKSSIQSDPPLIPKGPS--------- 46
            +R +   S A  F    IPP      I Q    ++ +   SD PL  +  +         
Sbjct: 604  LRLRAATSTANPF----IPPAHLIHSIPQWFSILRHAIAASDLPLGKRAHARILTSGHHP 659

Query: 47   --ILATNLIKSYFDEGLIEEARTLFDEMPE--RDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
               L  NLI  Y   G +  AR LFD  P+  RD+V+W  +++ +   +     + +F  
Sbjct: 660  DRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAHA--DKARDGFHLFRL 717

Query: 103  MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
            + R+ V+    TL+ V K C    S S A  +HG A+K GL+  ++V  +L+++YA    
Sbjct: 718  LRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKFG- 776

Query: 163  SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
             +  AR++F+ M  ++ V W  ++  Y  +G  Y  L +F E    G+  +  +     R
Sbjct: 777  RIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTLCTLAR 836

Query: 223  ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
               S   V   +L             L    + L MY   D  S            D+I 
Sbjct: 837  VVKSKQNVLEWQL-----------KQLKAYGTKLFMYDDDDDGS------------DVIA 873

Query: 283  WNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
            WN  ++ + + G + E ++ F  M + R + +  TF  +++  A L  L  G+Q+H  +V
Sbjct: 874  WNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVV 933

Query: 342  RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
            R GLD  +++ N LI+MY K G++S ++ +F +M++ DLV+W +M+ G    G  + ++ 
Sbjct: 934  RSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVG 993

Query: 402  LFDEMVKSGVRPDRIVFMAVLTACSHAG 429
            +F ++++ G+ PD+    +VL ACS  G
Sbjct: 994  MFVDLLRGGLLPDQFTVASVLRACSSLG 1021



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 92/182 (50%), Gaps = 1/182 (0%)

Query: 50   TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
            + ++  Y   G +E AR +F+E+P  D V+WT MI+G         A   +  M  ++V 
Sbjct: 1148 SGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQ 1207

Query: 110  PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
            P+ +T ++++KAC  + +L     +H   +K       +V  SL+D+YA C  ++++AR 
Sbjct: 1208 PDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCG-NIEDARG 1266

Query: 170  VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
            +F         SW  +I G A  GN    L  F+EM   GV  +  +F   + AC+ +G 
Sbjct: 1267 LFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGL 1326

Query: 230  VS 231
            VS
Sbjct: 1327 VS 1328


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/562 (35%), Positives = 321/562 (57%), Gaps = 7/562 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S +A  L+  Y     ++ AR LFD  P+ D+VSW  +I+GY       +A  +F  M+ 
Sbjct: 194 SPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMIS 253

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             + P++ T +S L     + SL +   +HG  I+  +   ++++++L+D+Y  C   ++
Sbjct: 254 AGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKC-RDVE 312

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A+ +       + V  TT+I+GY  +G     L  F+ ++ E ++    +FS    A A
Sbjct: 313 MAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFA 372

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               ++ GK +H ++IK        V ++ILDMY +   L  A + F+ +TEKD I WN+
Sbjct: 373 GLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNS 432

Query: 286 IIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I    ++G   E +N+F +M  E    +C + +  ++ACA L AL  G+++H  +++  
Sbjct: 433 MITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGP 492

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           L  +L   ++LIDMYAKCGN++ S+++F  M +R+ V+W S++  YG HG  KE + LF 
Sbjct: 493 LRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQERNEVSWNSIISAYGNHGDLKECLALFH 552

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRA 463
           EM+++G++PD + F+ +++AC HAG VDEG++Y+  M  +Y +    E Y CV D+ GRA
Sbjct: 553 EMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRA 612

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           GR+ EA+E I SMPF PD  VWG LLGAC  H    L ++A+  + DL P   G Y++L+
Sbjct: 613 GRLDEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLA 672

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSH--TQYVYGV 581
           N+ A  GKW +  K R IM+  G +K  G SWIEV +    F+A D  GSH  T  +Y V
Sbjct: 673 NVQAGAGKWRKVLKVRSIMKERGVRKVPGYSWIEVNNATHMFVAAD--GSHPLTAQIYSV 730

Query: 582 LEMLIRHMNETAYEPDIDCLIH 603
           L+ L+  + +  Y P +   +H
Sbjct: 731 LDSLLLELKKEGYVPQLYLPMH 752



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 123/444 (27%), Positives = 229/444 (51%), Gaps = 3/444 (0%)

Query: 56  YFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTL 115
           Y   G +++A+ LF  +      +W  MI G+T     N A   +++M+   V+P+ +T 
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTF 61

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMK 175
             V+KAC G+KS+    +VH      GL+  ++V +SL+ +YA     + +A+ +F+++ 
Sbjct: 62  PYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENG-HLSDAQYLFDNIP 120

Query: 176 WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKL 235
            K+ V W  ++ GY  +G+    + +F EM    ++ N  +F+  +  CAS   +  G  
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG- 294
           +H   +  G   + PV N++L MY +  CL  A + FD   + DL++WN II+GY ++G 
Sbjct: 181 LHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGL 240

Query: 295 SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
             E  ++F  M S    P+  TF S +     L +L   +++H  I+R  +  ++ L +A
Sbjct: 241 MGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSA 300

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
           LID+Y KC ++  +QKI  + S  D V  T+M+ GY  +G  KEA+E F  +V+  ++P 
Sbjct: 301 LIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPT 360

Query: 415 RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
            + F ++  A +    ++ G +   S+    ++    +   ++D+  + GR+  A  +  
Sbjct: 361 SVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFN 420

Query: 475 SMPFKPDESVWGPLLGACKEHRLP 498
            +  K D   W  ++ +C ++  P
Sbjct: 421 RITEK-DAICWNSMITSCSQNGRP 443



 Score =  209 bits (531), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 132/485 (27%), Positives = 243/485 (50%), Gaps = 7/485 (1%)

Query: 16  HKIPPIIKQ--SLQSVKKSSIQSDPPLIP--KGPSILATNLIKSYFDEGLIEEARTLFDE 71
           +  P ++K    L+SVK   I  +   +   K    + ++LIK Y + G + +A+ LFD 
Sbjct: 59  YTFPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDN 118

Query: 72  MPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNA 131
           +P++D V W VM+ GY        A  +F+EM  +E+ PN+ T + VL  C     L   
Sbjct: 119 IPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLG 178

Query: 132 ALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAH 191
             +HG+A+  GLE    V N+L+ +Y+  C  +  AR +F+     + VSW  +I+GY  
Sbjct: 179 TQLHGIAVSCGLELDSPVANTLLAMYSK-CQCLQAARKLFDTSPQSDLVSWNGIISGYVQ 237

Query: 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251
           +G       +F+ M+  G++ +  +F+  +        +   K IH  +I+H    ++ +
Sbjct: 238 NGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFL 297

Query: 252 MNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERF 310
            ++++D+Y +   +  A +   + +  D +   T+I+GY  +G + E L  F  +  ER 
Sbjct: 298 KSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERM 357

Query: 311 SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQK 370
            P   TF+SI  A A LAAL+ G+++H  I++  LD    + +A++DMYAKCG +  + +
Sbjct: 358 KPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACR 417

Query: 371 IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           +F+ ++++D + W SM+     +G   EAI LF +M   G R D +     L+AC++   
Sbjct: 418 VFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPA 477

Query: 431 VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490
           +  G +    M    +  +      ++D+  + G +  +  +   M  + +E  W  ++ 
Sbjct: 478 LHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQER-NEVSWNSIIS 536

Query: 491 ACKEH 495
           A   H
Sbjct: 537 AYGNH 541



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 95/180 (52%), Gaps = 1/180 (0%)

Query: 258 MYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFT 316
           MY R   L DA   F  +       WN +I G+   G  +  L  + KM     SP+ +T
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           F  ++ AC  L ++  G+ VH  +   GL  ++ + ++LI +YA+ G++SD+Q +F  + 
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
            +D V W  M+ GY  +G    AI++F EM  S ++P+ + F  VL+ C+   ++D G +
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 3/168 (1%)

Query: 358 MYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIV 417
           MY + G++ D++ +F  +       W  M+ G+   G    A+  + +M+ +GV PD+  
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 418 FMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMP 477
           F  V+ AC     V  G    +++N   +  +  +   ++ L    G + +A  L  ++P
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 478 FKPDESVWGPLL-GACKEHRLPNLGKL-AALRVLDLKPNMMGTYIILS 523
            K D  +W  +L G  K     N  K+   +R  ++KPN +    +LS
Sbjct: 121 QK-DSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLS 167


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/565 (34%), Positives = 327/565 (57%), Gaps = 6/565 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + T L+  Y   G++ EA+ LF  M  RDVV+W  MIAG + +   + A  + ++M    
Sbjct: 146 VCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEG 205

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDN 166
           + PN+ T+  VL      K+L +   +HG  ++   +  + V   L+D+YA C C+    
Sbjct: 206 ICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLY-- 263

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLL-EGVEMNPYSFSIAVRACA 225
           AR +F+ M  +N+VSW+ +I GY  S      L +F +M+L + ++  P +    +RACA
Sbjct: 264 ARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACA 323

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               +S G+ +H  +IK G   ++ + N++L MY +   + DA ++FD M  KD ++++ 
Sbjct: 324 KLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSA 383

Query: 286 IIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           I++G  ++G++   L++F  M+     P+  T   ++ AC+ LAAL  G   H  ++ RG
Sbjct: 384 IVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRG 443

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
              +  + NALIDMY+KCG IS ++++F+ M   D+V+W +M+IGYG HG G EA+ LF 
Sbjct: 444 FATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFH 503

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRA 463
           +++  G++PD I F+ +L++CSH+GLV EG  +F +M+ D+++ P  E   C+VD+LGRA
Sbjct: 504 DLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRA 563

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G + EA+  I++MPF+PD  +W  LL AC+ H+   LG+  + ++  L P   G +++LS
Sbjct: 564 GLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLS 623

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           NIY+A G+W++ A  R   +  G KK  G SWIE+   V  F+  D+       +   LE
Sbjct: 624 NIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLE 683

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGE 608
            L+  M    Y+ +   +  D+E E
Sbjct: 684 ELLVEMKRLGYQAECSFVFQDVEEE 708



 Score =  211 bits (537), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 142/506 (28%), Positives = 242/506 (47%), Gaps = 14/506 (2%)

Query: 23  KQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTV 82
           K+  Q   K++  +D  ++ K        L + Y     +  AR LFDE+P   V+ W  
Sbjct: 28  KKIHQHFLKNTSNADSSVLHK--------LTRLYLSCNQVVLARRLFDEIPNPSVILWNQ 79

Query: 83  MIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG 142
           +I  Y      + A  ++  M+   V PN +T   VLKAC G+ ++ +   +H  A   G
Sbjct: 80  IIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFG 139

Query: 143 LEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVF 202
           LE  ++V  +L+D YA C I ++  RL F+ M  ++ V+W  +I G +  G     + + 
Sbjct: 140 LESDVFVCTALVDFYAKCGILVEAQRL-FSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLI 198

Query: 203 KEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRF 262
            +M  EG+  N  +    +        +  GK +H   ++  F + + V   +LDMY + 
Sbjct: 199 MQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKC 258

Query: 263 DCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKM-KSERFSPNCFTFTSI 320
            CL  A + FD M  ++ ++W+ +I GY  S    E L +F +M   +   P   T  S+
Sbjct: 259 QCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSV 318

Query: 321 IAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDL 380
           + ACA L  LS G+++H  I++ G   ++ L N L+ MYAKCG I D+ + F  M+ +D 
Sbjct: 319 LRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDS 378

Query: 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS 440
           V++++++ G   +G+   A+ +F  M  SG+ PD    + VL ACSH   +  G      
Sbjct: 379 VSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGY 438

Query: 441 MNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL--P 498
           +       +  I   ++D+  + G++  A E+   M  + D   W  ++     H L   
Sbjct: 439 LIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMD-RHDIVSWNAMIIGYGIHGLGME 497

Query: 499 NLGKLAALRVLDLKPNMMGTYIILSN 524
            LG    L  L LKP+ +    +LS+
Sbjct: 498 ALGLFHDLLALGLKPDDITFICLLSS 523



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 114/429 (26%), Positives = 198/429 (46%), Gaps = 44/429 (10%)

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           +R EV  N   L   L+AC   KSL+ A  +H   +K        V + L  +Y +C   
Sbjct: 3   LRXEVKNNYLHL---LEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCN-Q 58

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +  AR +F+++   + + W  +I  YA +G   G + ++  ML  GV  N Y++   ++A
Sbjct: 59  VVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKA 118

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C+    +  G  IH+     G  S++ V  +++D Y +   L +A + F  M+ +D++ W
Sbjct: 119 CSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAW 178

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N +IAG    G   + + +  +M+ E   PN  T   ++       AL  G+ +H   VR
Sbjct: 179 NAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVR 238

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
           R  D  + +   L+DMYAKC  +  ++KIF  M  R+ V+W++M+ GY      KEA+EL
Sbjct: 239 RSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALEL 298

Query: 403 FDEMV-KSGVRPDRIVFMAVLTAC-----------------------------------S 426
           FD+M+ K  + P  +   +VL AC                                   +
Sbjct: 299 FDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYA 358

Query: 427 HAGLVDEGLKYFKSMNDYN-VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVW 485
             G++D+ +++F  MN  + V+ +  + GCV +  G A      + +++     PD +  
Sbjct: 359 KCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQN--GNAAVALSIFRMMQLSGIDPDLTTM 416

Query: 486 GPLLGACKE 494
             +L AC  
Sbjct: 417 LGVLPACSH 425



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 112/427 (26%), Positives = 207/427 (48%), Gaps = 37/427 (8%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV-R 105
           ++ T L+  Y     +  AR +FD M  R+ VSW+ MI GY   +C  +A  +F +M+ +
Sbjct: 246 VVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILK 305

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           + ++P   TL SVL+AC  +  LS    +H   IK G    I + N+L+ +YA C + +D
Sbjct: 306 DAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGV-ID 364

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +A   F+ M  K+ VS++ +++G   +GN    L +F+ M L G++ +  +    + AC+
Sbjct: 365 DAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACS 424

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               +  G   H  +I  GF ++  + N+++DMY +   +S A + F+ M   D+++WN 
Sbjct: 425 HLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNA 484

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I GY   G   E L +F  + +    P+  TF  ++++C+           H+G+V  G
Sbjct: 485 MIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCS-----------HSGLVMEG 533

Query: 345 LDGNLALAN------------ALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYG 391
                A++              ++D+  + G I ++      M  + D+  W++++    
Sbjct: 534 RLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACR 593

Query: 392 AHGHGKEAIELFDEMVK--SGVRPDRI-VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP 448
            H    + IEL +E+ K    + P+    F+ +    S AG  D+      +  D+ +  
Sbjct: 594 IH----KNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGL-- 647

Query: 449 NKEIYGC 455
            K+I GC
Sbjct: 648 -KKIPGC 653



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 163/331 (49%), Gaps = 21/331 (6%)

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           + AC  +  ++  K IH   +K+   ++  V++ +  +Y   + +  A + FDE+    +
Sbjct: 15  LEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSV 74

Query: 281 ITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           I WN II  Y  +G  +  ++++  M      PN +T+  ++ AC+ L A+  G ++H+ 
Sbjct: 75  ILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSH 134

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
               GL+ ++ +  AL+D YAKCG + ++Q++FS MS RD+V W +M+ G   +G   +A
Sbjct: 135 AKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDA 194

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN---PNKEIYGC- 455
           ++L  +M + G+ P+    + VL     A    + L + K+++ Y V     N  + G  
Sbjct: 195 VQLIMQMQEEGICPNSSTIVGVLPTVGEA----KALGHGKALHGYCVRRSFDNGVVVGTG 250

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA-----CKEHRLPNLGKLAALRVLD 510
           ++D+  +   +  A ++   M  + +E  W  ++G      C +  L    ++       
Sbjct: 251 LLDMYAKCQCLLYARKIFDVMGVR-NEVSWSAMIGGYVXSDCMKEALELFDQMI------ 303

Query: 511 LKPNMMGTYIILSNIYAAEGKWEEFAKFRKI 541
           LK  M  T + L ++  A  K  + ++ RK+
Sbjct: 304 LKDAMDPTPVTLGSVLRACAKLTDLSRGRKL 334



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 88/182 (48%), Gaps = 1/182 (0%)

Query: 316 TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEM 375
            +  ++ AC    +L+  +++H   ++   + + ++ + L  +Y  C  +  ++++F E+
Sbjct: 10  NYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEI 69

Query: 376 SDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGL 435
            +  ++ W  ++  Y  +G    AI+L+  M+  GVRP++  +  VL ACS    +++G+
Sbjct: 70  PNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGV 129

Query: 436 KYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           +       + +  +  +   +VD   + G + EA  L  SM  + D   W  ++  C  +
Sbjct: 130 EIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHR-DVVAWNAMIAGCSLY 188

Query: 496 RL 497
            L
Sbjct: 189 GL 190



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 40  LIPKG---PSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQA 96
           LI +G    +++   LI  Y   G I  AR +F+ M   D+VSW  MI GY       +A
Sbjct: 439 LIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEA 498

Query: 97  WTVFVEMVRNEVNPNAFTLSSVLKAC 122
             +F +++   + P+  T   +L +C
Sbjct: 499 LGLFHDLLALGLKPDDITFICLLSSC 524


>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
 gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
          Length = 897

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/560 (34%), Positives = 317/560 (56%), Gaps = 3/560 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I+ T  +  Y   G + +A+ +   MP+  + S+  +I GY   +   QA   F  +++ 
Sbjct: 318 IVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKT 377

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            +  +  TLS  L AC  ++       VHG+A+K     +I V N+++D+Y  C  ++  
Sbjct: 378 GLGFDEITLSGALNACASIRGDLEGRQVHGLAVKSISMSNICVANAILDMYGKC-KALAE 436

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  +F+ M+ ++ VSW  +I     +GN    L  F  M+   +E + +++   ++ACA 
Sbjct: 437 ASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAG 496

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              ++ G  IH  +IK G G +  V  +++DMYC+   +  A++  D   +K +++WN I
Sbjct: 497 RQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTEQKTMVSWNAI 556

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+G+     SE     FS+M     +P+ FT+ +++  CA LA +  G+Q+HA I+++ L
Sbjct: 557 ISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLGKQIHAQIIKQEL 616

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             ++ + + L+DMY+KCGN+ DSQ +F +  +RD VTW +M+ GY  HG G+EA++LF+ 
Sbjct: 617 QSDVYICSTLVDMYSKCGNMQDSQLMFEKAPNRDFVTWNAMLCGYAHHGLGEEALKLFES 676

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAG 464
           M    V+P+   F++VL AC+H GLVD+GL YF  M ++Y ++P  E Y C+VD+LGR+G
Sbjct: 677 MQLVNVKPNHATFVSVLRACAHMGLVDKGLHYFDVMLSEYGLDPQSEHYSCMVDILGRSG 736

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           R+ EA  L++ MPF+ D  +W  LL  CK H    + + A   +L L P      ++LSN
Sbjct: 737 RIDEALNLVQKMPFEADAVIWRNLLSVCKIHGNVEVAEKATRALLQLDPQDSSACVLLSN 796

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           IYA  G W   ++ RK+MR    KKE G SWIE++D+V  F+  DK     + +Y  L +
Sbjct: 797 IYADAGMWGNVSEMRKMMRHNKLKKEPGCSWIELKDEVHAFLVGDKGHPRDEEIYEKLGV 856

Query: 585 LIRHMNETAYEPDIDCLIHD 604
           LI  M    Y PD D L+ +
Sbjct: 857 LIGEMQSVGYIPDCDVLLDE 876



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 124/421 (29%), Positives = 223/421 (52%), Gaps = 2/421 (0%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
            ++I  Y   G ++ AR  F EMPERDVVSW  +I+G+       ++  VF+EM R  V 
Sbjct: 119 NSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEMGRCGVG 178

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
            +  +L+ VLKAC  ++       VHG+ +K G +  +   ++L+ +YA C   +D++  
Sbjct: 179 FDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKC-KRLDDSLS 237

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           VF+++  KN VSW+ +I G   +     GL +FKEM   GV ++   ++   R+CA+   
Sbjct: 238 VFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSA 297

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           +  GK +H+  +K  FGS++ V  + LDMY +   ++DA +    M +  L ++N II G
Sbjct: 298 LRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVG 357

Query: 290 YEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           Y +S    + L  F  +       +  T +  + ACA++     G+QVH   V+     N
Sbjct: 358 YARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQVHGLAVKSISMSN 417

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           + +ANA++DMY KC  ++++  +F  M  RD V+W +++     +G+ +E +  F  M+ 
Sbjct: 418 ICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMIH 477

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKE 468
           S + PD   + +VL AC+    ++ G++    +    +  +  +   +VD+  + G +++
Sbjct: 478 SRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEK 537

Query: 469 A 469
           A
Sbjct: 538 A 538



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 134/522 (25%), Positives = 243/522 (46%), Gaps = 55/522 (10%)

Query: 100 FVEMVRNEVNPNA--FTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVY 157
           F  + +N+  P A   T S + + C    SL+     H   I  G E + +V N LM +Y
Sbjct: 35  FSTLAQNQTQPPAKIRTFSHIYQECSKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQMY 94

Query: 158 ATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSG------------------------ 193
             C + +D A  VF+ M  ++ VS+ ++I+GYA  G                        
Sbjct: 95  IKC-LYLDYACKVFDKMYLRDVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVI 153

Query: 194 -----NG--YGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFG 246
                NG     + VF EM   GV  +  S ++ ++AC +      G  +H  V+K GF 
Sbjct: 154 SGFLQNGECRKSIDVFLEMGRCGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFD 213

Query: 247 SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG-YEKSGSSECLNMFSKM 305
            ++   +++L MY +   L D+   F E+ EK+ ++W+ +IAG  +   + E L +F +M
Sbjct: 214 CDVVTGSALLGMYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEM 273

Query: 306 KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNI 365
           +      +   + S+  +CA L+AL  G+++H+  ++     ++ +  A +DMYAKCG +
Sbjct: 274 QGVGVGVSQSIYASLFRSCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRM 333

Query: 366 SDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTAC 425
           +D+QK+ S M    L ++ ++++GY     G +A++ F  ++K+G+  D I     L AC
Sbjct: 334 ADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNAC 393

Query: 426 SHAGLVDEGLKY----FKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481
           +      EG +      KS++  N+     +   ++D+ G+   + EA +L   M  + D
Sbjct: 394 ASIRGDLEGRQVHGLAVKSISMSNIC----VANAILDMYGKCKALAEASDLFDMME-RRD 448

Query: 482 ESVWGPLLGACKE--HRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKF- 538
              W  ++ AC++  +    L   A++    ++P+    +   S + A  G+        
Sbjct: 449 AVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPD---DFTYGSVLKACAGRQALNTGME 505

Query: 539 ---RKIMRGMGSKKEVGMSWIEVRDKVCGFIAN-DKMGSHTQ 576
              R I  GMG    VG + +++  K CG I   DK+   T+
Sbjct: 506 IHTRIIKSGMGFDSFVGAALVDMYCK-CGMIEKADKIHDRTE 546



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 128/254 (50%), Gaps = 3/254 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S +   L+  Y   G+IE+A  + D   ++ +VSW  +I+G++       A   F  M+ 
Sbjct: 519 SFVGAALVDMYCKCGMIEKADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLE 578

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             VNP+ FT ++VL  C  + ++     +H   IK+ L+  +Y+ ++L+D+Y+ C  +M 
Sbjct: 579 MGVNPDNFTYAAVLDTCANLATVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCG-NMQ 637

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +++L+F     ++ V+W  ++ GYAH G G   L +F+ M L  V+ N  +F   +RACA
Sbjct: 638 DSQLMFEKAPNRDFVTWNAMLCGYAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACA 697

Query: 226 STGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLITW 283
             G V  G       + ++G        + ++D+  R   + +A     +M  E D + W
Sbjct: 698 HMGLVDKGLHYFDVMLSEYGLDPQSEHYSCMVDILGRSGRIDEALNLVQKMPFEADAVIW 757

Query: 284 NTIIAGYEKSGSSE 297
             +++  +  G+ E
Sbjct: 758 RNLLSVCKIHGNVE 771



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 100/229 (43%), Gaps = 34/229 (14%)

Query: 300 NMFSKMKSERFSP--NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALID 357
           N FS +   +  P     TF+ I   C+   +L+ G+Q HA ++  G +    ++N L+ 
Sbjct: 33  NNFSTLAQNQTQPPAKIRTFSHIYQECSKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQ 92

Query: 358 M-------------------------------YAKCGNISDSQKIFSEMSDRDLVTWTSM 386
           M                               YA CG +  ++K F EM +RD+V+W S+
Sbjct: 93  MYIKCLYLDYACKVFDKMYLRDVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSV 152

Query: 387 MIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV 446
           + G+  +G  +++I++F EM + GV  DR     VL AC      D G++    +  +  
Sbjct: 153 ISGFLQNGECRKSIDVFLEMGRCGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGF 212

Query: 447 NPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           + +      ++ +  +  R+ ++  +   +P K   S W  ++  C ++
Sbjct: 213 DCDVVTGSALLGMYAKCKRLDDSLSVFSELPEKNWVS-WSAMIAGCVQN 260


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 213/622 (34%), Positives = 341/622 (54%), Gaps = 69/622 (11%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPER---DVVSWTVMIAGYTSFNCHNQAWTVF-----VEM 103
           L+  Y   G +EEA  +FDE+ +R   DV+SW  +++ +      + AWT       + +
Sbjct: 51  LVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVK---SSNAWTALDLFSKMTL 107

Query: 104 VRNEVNPNA----FTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
           + +E   N      ++ ++L AC  +K++     VHG AI+ G    ++V N+L+D YA 
Sbjct: 108 IVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAK 167

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGN------------------------- 194
           C + M+NA  VFN M++K+ VSW  ++ GY+ SGN                         
Sbjct: 168 CGL-MENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTA 226

Query: 195 ---GYG-------GLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH- 243
              GY         L VF++M+  G   N  +    + ACAS G  S G  IHA  +K+ 
Sbjct: 227 VIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNC 286

Query: 244 ---------GFGSNLPVMNSILDMYCRFDCLSDANQYFDE--MTEKDLITWNTIIAGYEK 292
                    G   +L V N+++DMY +      A   FD+  + E++++TW  +I G+ +
Sbjct: 287 LLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQ 346

Query: 293 SG-SSECLNMFSKMKSERF--SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
            G S++ L +F +M SE +  +PN +T + I+ ACA LAA+  G+Q+HA ++R     + 
Sbjct: 347 YGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSS 406

Query: 350 A--LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           A  +AN LI+MY+KCG++  ++ +F  MS +  ++WTSMM GYG HG G EA+++FD+M 
Sbjct: 407 AYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMR 466

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRV 466
           K+G  PD I F+ VL ACSH G+VD+GL YF SM+ DY + P  E Y   +DLL R GR+
Sbjct: 467 KAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRL 526

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            +A++ +K MP +P   VW  LL AC+ H    L + A  +++++     G+Y ++SNIY
Sbjct: 527 DKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIY 586

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           A  G+W++ A+ R +M+  G KK  G SW++ +     F   D+    +  +Y +LE LI
Sbjct: 587 ATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLI 646

Query: 587 RHMNETAYEPDIDCLIHDLEGE 608
             +    Y P+ +  +HD++ E
Sbjct: 647 DRIKAMGYVPETNFALHDVDEE 668



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 122/439 (27%), Positives = 217/439 (49%), Gaps = 64/439 (14%)

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M+R     + FTL  VLKAC  + S    +  HG+    G E ++++ N+L+ +Y+ C  
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCG- 59

Query: 163 SMDNARLVFNDMKWK---NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVE--MNPYSF 217
           S++ A ++F+++  +   + +SW ++++ +  S N +  L +F +M L   E   N  S 
Sbjct: 60  SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSD 119

Query: 218 SIAV----RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFD 273
            I++     AC S   V   K +H   I++G   ++ V N+++D Y +   + +A + F+
Sbjct: 120 IISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFN 179

Query: 274 EMTEKDLITWNTIIAGYEKSG------------------------------------SSE 297
            M  KD+++WN ++AGY +SG                                    S E
Sbjct: 180 MMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHE 239

Query: 298 CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR----------GLDG 347
            LN+F +M      PNC T  S+++ACA+L A S G ++HA  ++           G D 
Sbjct: 240 ALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDE 299

Query: 348 NLALANALIDMYAKCGNISDSQKIFSE--MSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           +L + NALIDMY+KC +   ++ IF +  + +R++VTWT M+ G+  +G   +A++LF E
Sbjct: 300 DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVE 359

Query: 406 MVKS--GVRPDRIVFMAVLTACSHAGLVDEGLK---YFKSMNDYNVNPNKEIYGCVVDLL 460
           M+    GV P+      +L AC+H   +  G +   Y    + Y+ +    +  C++++ 
Sbjct: 360 MISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYD-SSAYFVANCLINMY 418

Query: 461 GRAGRVKEAYELIKSMPFK 479
            + G V  A  +  SM  K
Sbjct: 419 SKCGDVDTARHVFDSMSQK 437



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 86/185 (46%), Gaps = 10/185 (5%)

Query: 315 FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSE 374
           FT   ++ AC  L +  CG   H  I   G + N+ + NAL+ MY++CG++ ++  IF E
Sbjct: 11  FTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDE 70

Query: 375 MSDR---DLVTWTSMMIGYGAHGHGKEAIELFDEMV------KSGVRPDRIVFMAVLTAC 425
           ++ R   D+++W S++  +    +   A++LF +M        +  R D I  + +L AC
Sbjct: 71  ITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPAC 130

Query: 426 SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVW 485
                V +  +   +        +  +   ++D   + G ++ A ++   M FK D   W
Sbjct: 131 GSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFK-DVVSW 189

Query: 486 GPLLG 490
             ++ 
Sbjct: 190 NAMVA 194



 Score = 47.0 bits (110), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 39/76 (51%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            +A  LI  Y   G ++ AR +FD M ++  +SWT M+ GY      ++A  +F +M + 
Sbjct: 409 FVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKA 468

Query: 107 EVNPNAFTLSSVLKAC 122
              P+  T   VL AC
Sbjct: 469 GFVPDDITFLVVLYAC 484


>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/558 (35%), Positives = 322/558 (57%), Gaps = 6/558 (1%)

Query: 44  GPSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           G  ++A N LI  Y     + +A  +F  +  +D++SW  MIAG++      +A   F E
Sbjct: 231 GADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFRE 290

Query: 103 MVRNEV-NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
           M+   V  PN F   S   AC  +        +HG+ IK GL   ++   SL D+YA C 
Sbjct: 291 MLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCG 350

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
             +++AR VF  ++  + V+W  +I G+A   N       F +M   G+  N  +    +
Sbjct: 351 F-LESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLL 409

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DL 280
            AC+    ++ G  +H+ ++K GF  ++PV NS+L MY +   L+DA Q F+++  K D+
Sbjct: 410 CACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADI 469

Query: 281 ITWNTII-AGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           ++WNT++ A  +++ + E L +   M + R  P+  T T+++ +   +A+   G Q+H  
Sbjct: 470 VSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCF 529

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
           I++ GL+ +++++NALI+MY KCG++  ++K+F  + + D+++W+S+++GY   G GKEA
Sbjct: 530 IMKSGLNLDISVSNALINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEA 589

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVD 458
            ELF  M   GV+P+ I F+ +LTACSH G+V+EGLK +++M  DY ++P KE   C+VD
Sbjct: 590 FELFRTMRGLGVKPNEITFVGILTACSHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVD 649

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518
           LL RAG +  A + IK MPF PD  VW  LL ACK H    +GK AA  VL + P+    
Sbjct: 650 LLARAGCLDVAEDFIKQMPFVPDVVVWKTLLAACKVHGNLEVGKRAAENVLKIDPSNSAA 709

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
            ++L NI+A+ G W++FA+ R  MR M   K  G SWIE++DKV  F+A D +      +
Sbjct: 710 VVMLCNIHASSGHWKDFARLRSSMRRMDVGKVPGQSWIEIKDKVHVFLAEDNLHPERGKI 769

Query: 579 YGVLEMLIRHMNETAYEP 596
           Y +LE L+  + +   +P
Sbjct: 770 YTMLEELMLQILDDGCDP 787



 Score =  231 bits (589), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 146/505 (28%), Positives = 260/505 (51%), Gaps = 14/505 (2%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           IL  +++  Y   G ++EAR +FD MP ++VVSWT MI+GY+ +   + A T++V+M+R+
Sbjct: 134 ILQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRS 193

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
              P+ FT  S++K+C G+     A  +H   +K      +  +N+L+ +Y T    M +
Sbjct: 194 GHIPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMY-TKFSQMAD 252

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGV-EMNPYSFSIAVRACA 225
           A  VF+ +  K+ +SW ++I G++  G     L  F+EML + V + N + F  A  AC+
Sbjct: 253 AINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACS 312

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
                  G+ IH   IK G GS+L    S+ DMY +   L  A   F  + + DL+ WN 
Sbjct: 313 KLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNA 372

Query: 286 IIAGYEK-SGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           IIAG+   S + E  + FS+M+     PN  T  S++ AC+    L+ G QVH+ IV+ G
Sbjct: 373 IIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMG 432

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHGHGKEAIELF 403
            + ++ + N+L+ MY+KC N++D+ ++F ++ ++ D+V+W +++          E + L 
Sbjct: 433 FNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLT 492

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
             M  S ++PD +    VL +       + G +    +    +N +  +   ++++  + 
Sbjct: 493 KLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKC 552

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLA-----ALRVLDLKPNMMGT 518
           G ++ A ++  S+   PD   W  L+    +      GK A      +R L +KPN + T
Sbjct: 553 GSLECARKMFDSIG-NPDIISWSSLIVGYAQ---AGCGKEAFELFRTMRGLGVKPNEI-T 607

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMR 543
           ++ +    +  G  EE  K  + M+
Sbjct: 608 FVGILTACSHIGMVEEGLKLYRTMQ 632



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 118/448 (26%), Positives = 231/448 (51%), Gaps = 6/448 (1%)

Query: 91  NCHNQAWTVFVEMVRNEVNP-NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYV 149
           N H +A   F    +   +P  + T + ++ AC  ++SL +   +H   +    +  + +
Sbjct: 76  NLHREALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMIL 135

Query: 150 ENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG 209
           +N ++ +Y  C  S+  AR +F+ M  KN VSWT++I+GY+  G     + ++ +ML  G
Sbjct: 136 QNHILSMYGKCG-SLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSG 194

Query: 210 VEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDAN 269
              + ++F   V++C+        + +HA V+K  FG++L   N+++ MY +F  ++DA 
Sbjct: 195 HIPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAI 254

Query: 270 QYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSER-FSPNCFTFTSIIAACATL 327
             F  +  KDLI+W ++IAG+ + G   E L  F +M S+  + PN F F S  +AC+ L
Sbjct: 255 NVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKL 314

Query: 328 AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMM 387
               CG+Q+H   ++ GL  +L    +L DMYAKCG +  ++ +F  +   DLV W +++
Sbjct: 315 LEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAII 374

Query: 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN 447
            G+ +  + KE+   F +M  +G+ P+ +  +++L ACS   +++ G++    +     N
Sbjct: 375 AGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFN 434

Query: 448 PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALR 507
            +  +   ++ +  +   + +A ++ + +  K D   W  LL AC +      G++  L 
Sbjct: 435 LDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQN--QAGEVLRLT 492

Query: 508 VLDLKPNMMGTYIILSNIYAAEGKWEEF 535
            L     +   ++ L+N+  + G+   +
Sbjct: 493 KLMFASRIKPDHVTLTNVLVSSGQIASY 520


>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/596 (33%), Positives = 335/596 (56%), Gaps = 37/596 (6%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L T+LI    D   I+ AR + D+ P     SW  +I  YT       +  ++++M+R+ 
Sbjct: 29  LQTHLIPKLIDLHSIDYARFVLDQTPSPTDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSS 88

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
             P+ FT   VLKAC  + S+     +H   ++ G    ++V NSL+D+Y  C   +D+A
Sbjct: 89  TKPSNFTFPFVLKACSTLGSVLEGEQIHTHVLRLGFGSDLFVCNSLIDMYCKC-FRLDSA 147

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSG-------------------------NGYGG---- 198
           R  ++DM ++++VSW ++I+GY   G                         NGYG     
Sbjct: 148 RNFWDDMGFRDEVSWNSIISGYVQWGQVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDF 207

Query: 199 ---LGVFKEMLLEGVEMNPYSFSIA--VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMN 253
              L +F++ML+   E+ P + ++   + AC++      G+ +   +  +    N  ++ 
Sbjct: 208 VEMLSLFRQMLVSADEVQPNAATMVCLLSACSTLCNYEVGRFLSVFIDVNKIPLNTILVT 267

Query: 254 SILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSP 312
           +++DMY +   +  A + FD ++ K+L +WN II G  + G   E ++++  MK++   P
Sbjct: 268 ALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKP 327

Query: 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIF 372
           N  T  ++++ACA L AL  G++VH  + R GLD N+ LA AL+DMYAKCG I D+  IF
Sbjct: 328 NEITLVNVLSACAGLGALELGREVHLYLGRNGLDLNVILATALVDMYAKCGKIDDACLIF 387

Query: 373 SEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD 432
            + S++D+  W +M++G   HG G++++ +F +MV++GV+P+ + F+ VL+AC+H+GLV+
Sbjct: 388 VKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHSGLVE 447

Query: 433 EGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
           EG   F SM D + ++P  E Y C+VDLLGRAG +KEAYEL+++M   PD  +WG LL A
Sbjct: 448 EGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHLKEAYELVQNMLIPPDSIIWGALLSA 507

Query: 492 CKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEV 551
           C+ HR   L    +  ++  +   +G  I+LSNIYA+ G+W++ A+ R+ ++    KK  
Sbjct: 508 CRIHRNLELADKISETIMASQDPNIGFCILLSNIYASSGRWKDVARVRRQVKEKRIKKPS 567

Query: 552 GMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEG 607
           G SW+EV   V  F+  D     +  +YG  E+L+ H+    Y  + D + +++ G
Sbjct: 568 GCSWVEVDGVVHRFVVEDTTHLKSGEIYGAYEILVNHLKAEGYVANFDFIANNING 623



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 135/283 (47%), Gaps = 6/283 (2%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           +IL T LI  Y   G +E+A  +FD +  +++ SW  +I G        +A  ++  M  
Sbjct: 263 TILVTALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKA 322

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             V PN  TL +VL AC G+ +L     VH    + GL+ ++ +  +L+D+YA C   +D
Sbjct: 323 QSVKPNEITLVNVLSACAGLGALELGREVHLYLGRNGLDLNVILATALVDMYAKCG-KID 381

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +A L+F     K+   W  +I G A+ G+G   L VF +M+  GV+ N  +F   + AC 
Sbjct: 382 DACLIFVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACN 441

Query: 226 STGWVSFGKLIHAAVI-KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLITW 283
            +G V  G++  +++  KHG    L     ++D+  R   L +A +    M    D I W
Sbjct: 442 HSGLVEEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHLKEAYELVQNMLIPPDSIIW 501

Query: 284 NTIIAGYEKSGSSECLNMFSKMKSERFSPN---CFTFTSIIAA 323
             +++      + E  +  S+       PN   C   ++I A+
Sbjct: 502 GALLSACRIHRNLELADKISETIMASQDPNIGFCILLSNIYAS 544



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 146/326 (44%), Gaps = 44/326 (13%)

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS 295
           IHA  + HG    LP+   ++        +  A    D+       +WN++I  Y   GS
Sbjct: 18  IHAQTLIHG----LPLQTHLIPKLIDLHSIDYARFVLDQTPSPTDFSWNSLIRAYTVHGS 73

Query: 296 SE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
            +  L ++ KM      P+ FTF  ++ AC+TL ++  G+Q+H  ++R G   +L + N+
Sbjct: 74  PQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIHTHVLRLGFGSDLFVCNS 133

Query: 355 LIDMYAKC-------------------------------GNISDSQKIFSEMS-DRDLVT 382
           LIDMY KC                               G +  ++ +F EM   R++V 
Sbjct: 134 LIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVEKARDLFEEMPMRRNVVC 193

Query: 383 WTSMMIGYGAHGHGKEAIELFDEMVKSG--VRPDRIVFMAVLTACSHAGLVDEGLKYFKS 440
           WT+M+ GYG  G   E + LF +M+ S   V+P+    + +L+ACS     + G ++   
Sbjct: 194 WTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLSACSTLCNYEVG-RFLSV 252

Query: 441 MNDYNVNP-NKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL-- 497
             D N  P N  +   ++D+  + G V++A+ +   +  K   S W  ++  C +  L  
Sbjct: 253 FIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCKNLPS-WNAIITGCVQGGLLE 311

Query: 498 PNLGKLAALRVLDLKPNMMGTYIILS 523
             +     ++   +KPN +    +LS
Sbjct: 312 EAIDLYRHMKAQSVKPNEITLVNVLS 337



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/226 (21%), Positives = 95/226 (42%), Gaps = 10/226 (4%)

Query: 320 IIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD 379
           +++   T  +L+   Q+HA  +  GL     L   LID+++    I  ++ +  +     
Sbjct: 2   LLSLLRTATSLTQIHQIHAQTLIHGLPLQTHLIPKLIDLHS----IDYARFVLDQTPSPT 57

Query: 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439
             +W S++  Y  HG  + ++ L+ +M++S  +P    F  VL ACS  G V EG +   
Sbjct: 58  DFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIHT 117

Query: 440 SMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN 499
            +       +  +   ++D+  +  R+  A      M F+ DE  W  ++    +     
Sbjct: 118 HVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFR-DEVSWNSIISGYVQ----- 171

Query: 500 LGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545
            G++   R L  +  M    +  + +    GK  +F +   + R M
Sbjct: 172 WGQVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQM 217


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/538 (37%), Positives = 316/538 (58%), Gaps = 4/538 (0%)

Query: 72  MPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNA 131
           MP+R++VSWT MI+G +  +  ++A   F  M      P  F  SS ++AC  + S+   
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 132 ALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAH 191
             +H +A+K G+   ++V ++L D+Y+ C    D  + VF +M  K++VSWT +I GY+ 
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACK-VFEEMPCKDEVSWTAMIDGYSK 119

Query: 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251
            G     L  FK+M+ E V ++ +     + AC +     FG+ +H++V+K GF S++ V
Sbjct: 120 IGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFV 179

Query: 252 MNSILDMYCRFDCLSDANQYFDEMTE-KDLITWNTIIAGY-EKSGSSECLNMFSKMKSER 309
            N++ DMY +   +  A+  F   +E ++++++  +I GY E     + L++F +++ + 
Sbjct: 180 GNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQG 239

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
             PN FTF+S+I ACA  AAL  G Q+HA +++   D +  +++ L+DMY KCG +  + 
Sbjct: 240 IEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAI 299

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
           + F E+ D   + W S++  +G HG GK+AI++F+ MV  GV+P+ I F+++LT CSHAG
Sbjct: 300 QAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAG 359

Query: 430 LVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPL 488
           LV+EGL YF SM+  Y V P +E Y CV+DLLGRAGR+KEA E I  MPF+P+   W   
Sbjct: 360 LVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSF 419

Query: 489 LGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSK 548
           LGAC+ H    +GKLAA +++ L+P   G  ++LSNIYA E +WE+    R  MR    K
Sbjct: 420 LGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVK 479

Query: 549 KEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
           K  G SW++V  K   F A D        +Y  L+ L+  +    Y P  D +  D++
Sbjct: 480 KLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVPRTDSVPLDMD 537



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 116/374 (31%), Positives = 187/374 (50%), Gaps = 32/374 (8%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + +NL   Y   G + +A  +F+EMP +D VSWT MI GY+      +A   F +M+  
Sbjct: 77  FVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDE 136

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           EV  +   L S L AC  +K+      VH   +K G E  I+V N+L D+Y+     M++
Sbjct: 137 EVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAG-DMES 195

Query: 167 ARLVFN-DMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           A  VF  D + +N VS+T LI GY  +     GL VF E+  +G+E N ++FS  ++ACA
Sbjct: 196 ASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACA 255

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSIL-DMYCRFDCLSDANQYFDEMTEKDLITWN 284
           +   +  G  +HA V+K  F  + P ++SIL DMY +   L  A Q FDE+ +   I WN
Sbjct: 256 NQAALEQGTQLHAQVMKINFDED-PFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWN 314

Query: 285 TIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           ++++ + + G   + + +F +M      PN  TF S++  C+           HAG+V  
Sbjct: 315 SLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCS-----------HAGLVEE 363

Query: 344 GLDGNLALA------------NALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGY 390
           GLD   ++             + +ID+  + G + ++++  + M  + +   W S +   
Sbjct: 364 GLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGAC 423

Query: 391 GAHGH---GKEAIE 401
             HG    GK A E
Sbjct: 424 RIHGDKEMGKLAAE 437


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/509 (38%), Positives = 308/509 (60%), Gaps = 9/509 (1%)

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M RN ++ +A T S ++K C    ++  A LVH      G E   ++ N+L+++Y    +
Sbjct: 7   MHRNRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGL 66

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            +D AR +F++M  +N VSWTT+I+ Y++S   +  L     ML EGV  N Y++S  +R
Sbjct: 67  -LDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLR 125

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           AC   G ++  +L H +++K G  S++ V ++++D Y +     DA   F+EM   DL+ 
Sbjct: 126 AC--DGLLNLRQL-HGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVV 182

Query: 283 WNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           WN+II G+ + S   E L+++ +MK   F  +  T TS++ AC  LA L  G+QVH  ++
Sbjct: 183 WNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVL 242

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEM-SDRDLVTWTSMMIGYGAHGHGKEAI 400
           +   D +L L NAL+DMY KCG++ D+  +F+ M +++D+++W++M+ G   +G   +A+
Sbjct: 243 K--YDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADAL 300

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDL 459
           +LF+ M   G +P+ I  + VL ACSHAGLV++G  YF+SM + + ++P +E YGC++DL
Sbjct: 301 KLFEAMKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDL 360

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
           LGRAG++ EA +LI  M  +PD   W  LLGAC+ H+  +L   AA  +L L P   GTY
Sbjct: 361 LGRAGKLDEAVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDPADAGTY 420

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVY 579
           I+LSNIYA   KWE+ A+ R+ MR  G KK+ G SWIEV  +V  FI  D      + + 
Sbjct: 421 ILLSNIYANSQKWEDVAEVRRKMRTRGVKKDPGCSWIEVSKQVHAFILGDNSHPRIEEIK 480

Query: 580 GVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
             L  LI+ +    Y PD + ++ DLEGE
Sbjct: 481 RELSQLIQRLMRLGYVPDTNFVLQDLEGE 509



 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 206/371 (55%), Gaps = 12/371 (3%)

Query: 42  PKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFV 101
           PK  + L   LI  Y   GL++EAR LFDEMP+R+VVSWT MI+ Y++ N +++A    +
Sbjct: 49  PK--TFLINTLINMYVKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLI 106

Query: 102 EMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
            M+R  V PN +T SSVL+AC G+ +L     +HG  +K GLE  ++V ++L+D Y+   
Sbjct: 107 LMLREGVRPNMYTYSSVLRACDGLLNLRQ---LHGSILKVGLESDVFVRSALIDTYSKLG 163

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
              D A  VFN+M   + V W ++I G+A + +G   L ++K M       +  + +  +
Sbjct: 164 EQHD-ALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVL 222

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE-MTEKDL 280
           RAC     +  G+ +H  V+K  +  +L + N++LDMYC+   L DAN  F   MTEKD+
Sbjct: 223 RACTGLALLELGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDV 280

Query: 281 ITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           I+W+T+IAG  ++G S++ L +F  MKS+   PN  T   ++ AC+    ++ G      
Sbjct: 281 ISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQS 340

Query: 340 IVRR-GLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGK 397
           +    G+D        +ID+  + G + ++ K+  EM+ + D VTW  ++     H +  
Sbjct: 341 MKEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLGACRVHKNVD 400

Query: 398 EAIELFDEMVK 408
            AI    E++K
Sbjct: 401 LAIYAAKEILK 411


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/565 (34%), Positives = 327/565 (57%), Gaps = 3/565 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + + ++LI +Y   G +  AR +FD +  +D V+WT M++ Y+  +    A   F +M  
Sbjct: 185 AFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRM 244

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
               PN F L+SVLKA   + S      +HG A+K   +   +V  +L+D+YA C   ++
Sbjct: 245 AGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGY-IE 303

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +AR VF  +   + + W+ LI+ YA S        +F  M+   V  N +S S  ++ACA
Sbjct: 304 DARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACA 363

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           +  ++  G+ IH  VIK G+ S L V N+++D+Y +   + ++ + F  + + + ++WNT
Sbjct: 364 NVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNT 423

Query: 286 IIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           II GY +SG +E  L++F +M++        TF+S++ ACA  A++    Q+H+ I +  
Sbjct: 424 IIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKST 483

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
            + +  + N+LID YAKCG I D+ K+F  +   D+V+W +++ GY  HG   +A+ELF+
Sbjct: 484 FNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELFN 543

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRA 463
            M KS  +P+ + F+A+L+ C   GLV++GL  F SM  D+ + P+ + Y C+V LLGRA
Sbjct: 544 RMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRA 603

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           GR+ +A + I  +P  P   VW  LL +C  H+   LGK +A +VL+++P    TY++LS
Sbjct: 604 GRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGKFSAEKVLEIEPQDETTYVLLS 663

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           N+YAA G  ++ A  RK MR +G KKEVG+SW+E++ +V  F          + +  +LE
Sbjct: 664 NMYAAAGILDQVALLRKSMRNIGVKKEVGLSWVEIKGEVHAFSVGSADHPDMRIINAMLE 723

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGE 608
            L    +   Y PDI+ ++HD++ E
Sbjct: 724 WLNLKASREGYVPDINVVLHDVDEE 748



 Score =  231 bits (589), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 134/485 (27%), Positives = 248/485 (51%), Gaps = 6/485 (1%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108
           A  L+  Y   G +  AR LFD MPER++VS+  ++ GY       +A  +F  + R   
Sbjct: 87  ANVLLNLYAKLGPLAAARRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGH 146

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
             N F L+++LK    M +      +H  A K G + + +V +SL+D Y+ C  ++ +AR
Sbjct: 147 EVNHFVLTTILKVLVAMDAPGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCG-AVSHAR 205

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            VF+ + WK+ V+WT +++ Y+ +      L  F +M + G + NP+  +  ++A     
Sbjct: 206 CVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLS 265

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
               GK IH   +K    +   V  ++LDMY +   + DA   F+ +   D+I W+ +I+
Sbjct: 266 SAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLIS 325

Query: 289 GYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
            Y +S  +E    MF +M      PN F+ + ++ ACA +A L  GQQ+H  +++ G + 
Sbjct: 326 RYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYES 385

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
            L + NAL+D+YAKC N+ +S +IF  + D + V+W ++++GY   G  ++A+ +F EM 
Sbjct: 386 ELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMR 445

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
            + V   ++ F +VL AC++   +   ++    +     N +  +   ++D   + G ++
Sbjct: 446 AAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIR 505

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNMMGTYIILSNI 525
           +A ++ +S+  + D   W  ++     H      L     +   D KPN + T++ L ++
Sbjct: 506 DALKVFESI-IQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDV-TFVALLSV 563

Query: 526 YAAEG 530
             + G
Sbjct: 564 CGSTG 568



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/387 (25%), Positives = 184/387 (47%), Gaps = 6/387 (1%)

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEG--LEGSIYVENSLMDVYATCCISMDNAR 168
           +++  + +L+ C           VH   ++ G   +   +  N L+++YA     +  AR
Sbjct: 46  DSYACARLLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLG-PLAAAR 104

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            +F+ M  +N VS+ TL+ GYA  G      G+F+ +  EG E+N +  +  ++   +  
Sbjct: 105 RLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAMD 164

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
                  IHA   K G   N  V +S++D Y     +S A   FD +  KD +TW  +++
Sbjct: 165 APGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVS 224

Query: 289 GYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
            Y ++   E  LN FSKM+     PN F  TS++ A   L++   G+ +H   V+   D 
Sbjct: 225 CYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDT 284

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
              +  AL+DMYAKCG I D++ +F  +   D++ W+ ++  Y      ++A E+F  M+
Sbjct: 285 EPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMM 344

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
           +S V P+      VL AC++   +D G +    +          +   ++D+  +   ++
Sbjct: 345 RSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNME 404

Query: 468 EAYELIKSMPFKPDESVWGPLL-GACK 493
            + E+ +S+    +E  W  ++ G C+
Sbjct: 405 NSLEIFRSLR-DANEVSWNTIIVGYCQ 430



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 148/284 (52%), Gaps = 8/284 (2%)

Query: 211 EMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVM--NSILDMYCRFDCLSDA 268
           +++ Y+ +  ++ C + G    G+ +HA V++ G  + L     N +L++Y +   L+ A
Sbjct: 44  KLDSYACARLLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAA 103

Query: 269 NQYFDEMTEKDLITWNTIIAGYE-KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATL 327
            + FD M E++++++ T++ GY  + G  E   +F +++ E    N F  T+I+     +
Sbjct: 104 RRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAM 163

Query: 328 AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMM 387
            A      +HA   + G D N  + ++LID Y+ CG +S ++ +F  +  +D VTWT+M+
Sbjct: 164 DAPGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMV 223

Query: 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTA--CSHAGLVDEGLKYFKSMNDYN 445
             Y  +   ++A+  F +M  +G +P+  V  +VL A  C  + ++ +G+         +
Sbjct: 224 SCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCD 283

Query: 446 VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
             P+  + G ++D+  + G +++A  + + +P   D  +W  L+
Sbjct: 284 TEPH--VGGALLDMYAKCGYIEDARTVFEIIPHD-DVILWSFLI 324


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/563 (36%), Positives = 317/563 (56%), Gaps = 4/563 (0%)

Query: 48   LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
            +   LI  Y   G I++AR +FD M +RDV+SW  M+ G     C ++A+TVF++M +  
Sbjct: 460  IGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEG 519

Query: 108  VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
            + P++ T  S+L       +L     VH  A++ GL     V ++ + +Y  C  S+D+A
Sbjct: 520  LVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCG-SIDDA 578

Query: 168  RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
            RL+F+ +  ++  +W  +I G A    G   L +F +M  EG   +  +F   + A    
Sbjct: 579  RLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDE 638

Query: 228  GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
              + + K +H+     G   +L V N+++  Y +   +  A Q FD+M E+++ TW  +I
Sbjct: 639  EALEWVKEVHSHATDAGL-VDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMI 697

Query: 288  AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
             G  + G   +  + F +M  E   P+  T+ SI++ACA+  AL   ++VH   V  GL 
Sbjct: 698  GGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLV 757

Query: 347  GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
             +L + NAL+ MYAKCG+I D++ +F +M +RD+ +WT M+ G   HG G EA++ F +M
Sbjct: 758  SDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKM 817

Query: 407  VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGR 465
               G +P+   ++AVLTACSHAGLVDEG + F SM  DY + P  E Y C+VDLLGRAG 
Sbjct: 818  KSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGL 877

Query: 466  VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
            ++EA   I +MP +PD++ WG LLGAC  +    + + AA   L LKP    TY++LSNI
Sbjct: 878  LEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNI 937

Query: 526  YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
            YAA GKWE+    R +M+  G +KE G SWIEV +++  F+  D     ++ +Y  L  L
Sbjct: 938  YAATGKWEQKLLVRSMMQRKGIRKEPGRSWIEVDNRIHSFVVGDTSHPESKEIYAQLNDL 997

Query: 586  IRHMNETAYEPDIDCLIHDLEGE 608
            I  +    Y PD   ++ + + E
Sbjct: 998  IERLKAKGYVPDTRLVLRNTDQE 1020



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 134/452 (29%), Positives = 236/452 (52%), Gaps = 5/452 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A  L++ Y   G ++ AR +FD++ ++++  WT MI GY  +     A  V+ +M +  
Sbjct: 155 VANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQEC 214

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
             PN  T  S+LKAC    +L     +H   I+ G +  + VE +L+++Y  C  S+++A
Sbjct: 215 GQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCG-SIEDA 273

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           +L+F+ M  +N +SWT +I G AH G G     +F +M  EG   N Y++   + A AS 
Sbjct: 274 QLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASA 333

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
           G + + K +H+  +  G   +L V N+++ MY +   + DA   FD MTE+D+ +W  +I
Sbjct: 334 GALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMI 393

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSII--AACATLAALSCGQQVHAGIVRRG 344
            G  + G   E  ++F +M+     PN  T+ SI+  +A A+ +AL   + VH      G
Sbjct: 394 GGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAG 453

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
              +L + NALI MYAKCG+I D++ +F  M DRD+++W +MM G   +G G EA  +F 
Sbjct: 454 FISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFL 513

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
           +M + G+ PD   ++++L        ++   +  K   +  +  +  +    + +  R G
Sbjct: 514 QMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCG 573

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHR 496
            + +A  L   +  +   + W  ++G   + R
Sbjct: 574 SIDDARLLFDKLSVR-HVTTWNAMIGGAAQQR 604



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 138/477 (28%), Positives = 251/477 (52%), Gaps = 15/477 (3%)

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           V+  +  ++F+  ++L+ C   + +  A  VH   IK G+E ++YV N L+ VY  C   
Sbjct: 110 VQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCG-R 168

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +  AR VF+ +  KN   WTT+I GYA  G+    + V+ +M  E  + N  ++   ++A
Sbjct: 169 LQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKA 228

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C     + +GK IHA +I+ GF S++ V  ++++MY +   + DA   FD+M E+++I+W
Sbjct: 229 CCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISW 288

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
             +I G    G   E  ++F +M+ E F PN +T+ SI+ A A+  AL   ++VH+  V 
Sbjct: 289 TVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVN 348

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            GL  +L + NAL+ MYAK G+I D++ +F  M++RD+ +WT M+ G   HG G+EA  L
Sbjct: 349 AGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSL 408

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP----NKEIYGCVVD 458
           F +M ++G  P+   ++++L A + A      L++ K ++ +        +  I   ++ 
Sbjct: 409 FLQMQRNGCLPNLTTYLSILNASAIAS--TSALEWVKVVHKHAEEAGFISDLRIGNALIH 466

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD--LKPNMM 516
           +  + G + +A  +   M  + D   W  ++G   ++   +      L++    L P+  
Sbjct: 467 MYAKCGSIDDARLVFDGMCDR-DVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDST 525

Query: 517 GTYIILSNIYAAEGKWEEFAKFRK--IMRGMGSKKEVGMSWIEVRDKVCGFIANDKM 571
            TY+ L N + +    E   +  K  +  G+ S   VG ++I +  + CG I + ++
Sbjct: 526 -TYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIR-CGSIDDARL 580



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 102/391 (26%), Positives = 194/391 (49%), Gaps = 31/391 (7%)

Query: 198 GLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILD 257
            + + K  + +G+ ++ +S+   ++ C     +   K +H  +IK G   NL V N +L 
Sbjct: 102 AVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLR 161

Query: 258 MYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFT 316
           +Y R   L  A Q FD++ +K++  W T+I GY + G +E  + ++ KM+ E   PN  T
Sbjct: 162 VYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEIT 221

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           + SI+ AC     L  G+++HA I++ G   ++ +  AL++MY KCG+I D+Q IF +M 
Sbjct: 222 YLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMV 281

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
           +R++++WT M+ G   +G G+EA  LF +M + G  P+   ++++L A + AG     L+
Sbjct: 282 ERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAG----ALE 337

Query: 437 YFKSMNDYNVNP----NKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGAC 492
           + K ++ + VN     +  +   +V +  ++G + +A  +   M  + D   W  ++G  
Sbjct: 338 WVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMT-ERDIFSWTVMIGGL 396

Query: 493 KEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVG 552
            +H     G+ A    L ++ N               G       +  I+          
Sbjct: 397 AQH---GRGQEAFSLFLQMQRN---------------GCLPNLTTYLSILNASAIASTSA 438

Query: 553 MSWIEVRDK---VCGFIANDKMGSHTQYVYG 580
           + W++V  K     GFI++ ++G+   ++Y 
Sbjct: 439 LEWVKVVHKHAEEAGFISDLRIGNALIHMYA 469


>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/558 (35%), Positives = 323/558 (57%), Gaps = 6/558 (1%)

Query: 44  GPSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           G  ++A N LI  Y     + +A  +F  +  +D++SW  MIAG++      +A   F E
Sbjct: 231 GADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFRE 290

Query: 103 MVRNEV-NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
           M+   V  PN F   S   AC  +        +HG+ IK GL   ++   SL D+YA C 
Sbjct: 291 MLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCG 350

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
             +++AR VF  ++  + V+W  +I G+A   N       F +M   G+  N  +    +
Sbjct: 351 F-LESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLL 409

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DL 280
            AC+    ++ G  +H+ ++K GF  ++PV NS+L MY +   L+DA Q F+++  K D+
Sbjct: 410 CACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADI 469

Query: 281 ITWNTII-AGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           ++WNT++ A  +++ + E L +   M + R  P+  T T+++ +   +A+   G Q+H  
Sbjct: 470 VSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCF 529

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
           I++ GL+ +++++NALI+MY KCG++  ++K+F  + + D+++W+S+++GY   G GKEA
Sbjct: 530 IMKSGLNLDISVSNALINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEA 589

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVD 458
            ELF  M   GV+P+ I F+ +LTACSH G+V+EGLK +++M  DY ++P KE   C+VD
Sbjct: 590 FELFRTMRGLGVKPNEITFVGILTACSHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVD 649

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518
           LL RAG +  A + I+ MPF PD  VW  LL ACK H    +GK AA  VL + P+    
Sbjct: 650 LLARAGCLDVAEDFIRQMPFVPDVVVWKTLLAACKVHGNLEVGKRAAENVLKIDPSNSAA 709

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
            ++L NI+A+ G W++FA+ R  MR M   K  G SWIE++DKV  F+A D +      +
Sbjct: 710 VVMLCNIHASSGHWKDFARLRSSMRRMDVGKVPGQSWIEIKDKVHVFLAEDNLHPERGKI 769

Query: 579 YGVLEMLIRHMNETAYEP 596
           Y +LE L+  + + + +P
Sbjct: 770 YTMLEELMLQILDDSCDP 787



 Score =  231 bits (589), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 146/505 (28%), Positives = 260/505 (51%), Gaps = 14/505 (2%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           IL  +++  Y   G ++EAR +FD MP ++VVSWT MI+GY+ +   + A T++V+M+R+
Sbjct: 134 ILQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRS 193

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
              P+ FT  S++K+C G+     A  +H   +K      +  +N+L+ +Y T    M +
Sbjct: 194 GHIPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMY-TKFSQMAD 252

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGV-EMNPYSFSIAVRACA 225
           A  VF+ +  K+ +SW ++I G++  G     L  F+EML + V + N + F  A  AC+
Sbjct: 253 AINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACS 312

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
                  G+ IH   IK G GS+L    S+ DMY +   L  A   F  + + DL+ WN 
Sbjct: 313 KLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNA 372

Query: 286 IIAGYEK-SGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           IIAG+   S + E  + FS+M+     PN  T  S++ AC+    L+ G QVH+ IV+ G
Sbjct: 373 IIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMG 432

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHGHGKEAIELF 403
            + ++ + N+L+ MY+KC N++D+ ++F ++ ++ D+V+W +++          E + L 
Sbjct: 433 FNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLT 492

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
             M  S ++PD +    VL +       + G +    +    +N +  +   ++++  + 
Sbjct: 493 KLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKC 552

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLA-----ALRVLDLKPNMMGT 518
           G ++ A ++  S+   PD   W  L+    +      GK A      +R L +KPN + T
Sbjct: 553 GSLECARKMFDSIG-NPDIISWSSLIVGYAQ---AGCGKEAFELFRTMRGLGVKPNEI-T 607

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMR 543
           ++ +    +  G  EE  K  + M+
Sbjct: 608 FVGILTACSHIGMVEEGLKLYRTMQ 632



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 118/448 (26%), Positives = 231/448 (51%), Gaps = 6/448 (1%)

Query: 91  NCHNQAWTVFVEMVRNEVNP-NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYV 149
           N H +A   F    +   +P  + T + ++ AC  ++SL +   +H   +    +  + +
Sbjct: 76  NLHREALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMIL 135

Query: 150 ENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG 209
           +N ++ +Y  C  S+  AR +F+ M  KN VSWT++I+GY+  G     + ++ +ML  G
Sbjct: 136 QNHILSMYGKCG-SLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSG 194

Query: 210 VEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDAN 269
              + ++F   V++C+        + +HA V+K  FG++L   N+++ MY +F  ++DA 
Sbjct: 195 HIPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAI 254

Query: 270 QYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSER-FSPNCFTFTSIIAACATL 327
             F  +  KDLI+W ++IAG+ + G   E L  F +M S+  + PN F F S  +AC+ L
Sbjct: 255 NVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKL 314

Query: 328 AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMM 387
               CG+Q+H   ++ GL  +L    +L DMYAKCG +  ++ +F  +   DLV W +++
Sbjct: 315 LEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAII 374

Query: 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN 447
            G+ +  + KE+   F +M  +G+ P+ +  +++L ACS   +++ G++    +     N
Sbjct: 375 AGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFN 434

Query: 448 PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALR 507
            +  +   ++ +  +   + +A ++ + +  K D   W  LL AC +      G++  L 
Sbjct: 435 LDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQN--QAGEVLRLT 492

Query: 508 VLDLKPNMMGTYIILSNIYAAEGKWEEF 535
            L     +   ++ L+N+  + G+   +
Sbjct: 493 KLMFASRIKPDHVTLTNVLVSSGQIASY 520


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/567 (35%), Positives = 331/567 (58%), Gaps = 9/567 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV- 104
           + +A+ L K YF    ++ AR +FD +P  D V W  ++AG +     ++A   F  MV 
Sbjct: 149 TFVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLSG----SEAVESFARMVC 204

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
              V P+A TL+SVL A   +  ++    VH  A K GL    +V   L+ +Y+ C   +
Sbjct: 205 DGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCG-DV 263

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           ++AR +F+ M+  + V++  LI+GY+ +G     + +F E++  G+  N  +    +   
Sbjct: 264 ESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVH 323

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           +  G     + +H  V+K GF +N PV  +I  ++CR + +  A + FD M EK + +WN
Sbjct: 324 SPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWN 383

Query: 285 TIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +I+GY ++G +E  + +F +M      PN  T +S ++ACA L ALS G+ +H  I   
Sbjct: 384 AMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEE 443

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
            L+ N+ +  ALIDMYAKCG+IS++++IF+ M ++++V+W +M+ GYG HG G EA++L+
Sbjct: 444 DLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLY 503

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGR 462
            +M+ + + P    F++VL ACSH GLV+EG K F+SM +DY +NP  E   C+VDLLGR
Sbjct: 504 KDMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGR 563

Query: 463 AGRVKEAYELIKSMPFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           AG++KEA+ELI   P       VWG LLGAC  H+  +L KLA+ ++ +L P   G Y++
Sbjct: 564 AGQLKEAFELISEFPKSAVGPGVWGALLGACMVHKDSDLAKLASQKLFELDPENSGYYVL 623

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGV 581
           LSN++ ++ ++ E A  R+  +     K  G + IE+ +K   F+A D+    ++ +Y  
Sbjct: 624 LSNLHTSKKQYSEAAVVRQEAKSRKLVKTPGYTLIEIGNKPHVFMAGDRAHPQSEAIYSY 683

Query: 582 LEMLIRHMNETAYEPDIDCLIHDLEGE 608
           LE L   M E  Y P+ +  ++D+E E
Sbjct: 684 LEKLTAKMIEAGYRPETEAALYDVEEE 710


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/567 (35%), Positives = 334/567 (58%), Gaps = 10/567 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPE--RDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
            L  NLI  Y   G + +A  LF       + +V+WT +I   + FN H QA ++F +M 
Sbjct: 178 FLFNNLINLYAKCGCLNQALLLFSITHHHFKTIVTWTSLITHLSHFNMHLQALSLFNQMR 237

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
            +   PN FT SS+L A      + +   +H +  K G + +I+V  +L+D+YA C   M
Sbjct: 238 CSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCA-DM 296

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEM-NPYSFSIAVRA 223
            +A  VF+ M  +N VSW ++I G+ H+      +GVFK++L E   + N  S S  + A
Sbjct: 297 HSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSA 356

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMY--CRFDCLSDANQYFDEMTEKDLI 281
           CA+ G ++FG+ +H  V+K+G      VMNS++DMY  CRF    +  + F  + ++D++
Sbjct: 357 CANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRF--FDEGVKLFQCVGDRDVV 414

Query: 282 TWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           TWN ++ G+ ++    E  N F  M+ E   P+  +F++++ + A+LAAL  G  +H  I
Sbjct: 415 TWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQI 474

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           ++ G   N+ +  +LI MYAKCG++ D+ ++F  + D ++++WT+M+  Y  HG   + I
Sbjct: 475 IKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVI 534

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDL 459
           ELF+ M+  G+ P  + F+ VL+ACSH G V+EGL +F SM   +++NP  E Y C+VDL
Sbjct: 535 ELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDL 594

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
           LGRAG + EA   I+SMP KP  SVWG LLGAC+++    +G+ AA R+ +++P   G Y
Sbjct: 595 LGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNY 654

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVY 579
           ++L+N+    G+ EE  + R++M   G +KE G SWI+V++    F A+D+  S +  +Y
Sbjct: 655 VLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDEIY 714

Query: 580 GVLEMLIRHMNETAYEPDIDCLIHDLE 606
            +LE L + + +  Y  + + + + LE
Sbjct: 715 KMLEKLEKLVKKKGYVAETEFVTNHLE 741



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 115/417 (27%), Positives = 216/417 (51%), Gaps = 17/417 (4%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFN-- 172
           L+ +L      +SL +A  +H   I        ++ N+L+++YA C   ++ A L+F+  
Sbjct: 145 LNHLLNTAIQTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCG-CLNQALLLFSIT 203

Query: 173 DMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSF 232
              +K  V+WT+LIT  +H       L +F +M   G   N ++FS  + A A+T  V  
Sbjct: 204 HHHFKTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLH 263

Query: 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG-YE 291
           G+ +H+ + KHGF +N+ V  +++DMY +   +  A + FD+M E++L++WN++I G + 
Sbjct: 264 GQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFH 323

Query: 292 KSGSSECLNMFSKMKSER-FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
            +     + +F  +  E+   PN  + +S+++ACA +  L+ G+QVH  +V+ GL     
Sbjct: 324 NNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTY 383

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           + N+L+DMY KC    +  K+F  + DRD+VTW  +++G+  +   +EA   F  M + G
Sbjct: 384 VMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREG 443

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470
           + PD   F  VL + +    + +G      +       N  I G ++ +  + G + +AY
Sbjct: 444 ILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAY 503

Query: 471 ELIKSMPFKPDESV--WGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           ++ + +    D +V  W  ++ A + H   N       +V++L  +M+   I  S++
Sbjct: 504 QVFEGI---EDHNVISWTAMISAYQLHGCAN-------QVIELFEHMLSEGIEPSHV 550


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/569 (34%), Positives = 332/569 (58%), Gaps = 10/569 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + L+ +L+ +Y   GL+ +A+ +F   P ++VVSWT++I+G    +C  +A  VF EM+ 
Sbjct: 56  TFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREMIM 115

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISM 164
               PNA T+SSVL A   +  +  A  VH   ++ G EG+++VE +L+D+Y+   C+ +
Sbjct: 116 GNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGV 175

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
             AR +F  M  +N V+W  +++GY+  G     + +F  M  +G+ ++ Y+    + A 
Sbjct: 176 --ARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPAS 233

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
            S G +  G  IH  +I+ G+ ++  +  +++D+Y   +C+ DA++ F EM+ KD+  W 
Sbjct: 234 LSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWT 293

Query: 285 TIIAGYEKSGS-SECLNMFSKMKS-ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
            ++ G+         +  F+KM   +    +      I+++C+   AL  G++VHA  ++
Sbjct: 294 LMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIK 353

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
                N+ + +A+IDMYA CGN+ D+++ F  M ++D+V W +M+ G G +G+G +AI+L
Sbjct: 354 TCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDL 413

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLG 461
           F +M  SG+ PD   F++VL ACSHAG+V EGL+ F  M    +V PN + Y CV+D+LG
Sbjct: 414 FLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQHYACVIDILG 473

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           RAG++  AY  I +MPF+PD  V+  LLGAC+ H    LG   + ++ +++PN  G Y++
Sbjct: 474 RAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVL 533

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQY--VY 579
           LSN+YA  G WE     R  +R    KK+ G S IE+  ++  F+A +K   H QY  + 
Sbjct: 534 LSNMYALAGNWEGVKMTRASLRSKRMKKDPGFSSIEINQEIYTFMAGEK--DHPQYFKIE 591

Query: 580 GVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           G+L+ LI  + +  Y P+ + L+ D+  +
Sbjct: 592 GILKGLILKIKKAGYVPNTNVLLQDVSDD 620



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 114/388 (29%), Positives = 206/388 (53%), Gaps = 7/388 (1%)

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             ++P A   +S+L+  K +K L     +H   I  GL  + ++ NSLM+ Y  C +  D
Sbjct: 18  QRLSPLAQPHASILRKLKDLKPLQQ---IHAQIITSGLTHNTFLSNSLMNAYVYCGLLAD 74

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A+ +F+   +KN VSWT LI+G A +      + VF+EM++   + N  + S  + A A
Sbjct: 75  -AKQIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFA 133

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           + G +   K +H   ++ GF  N+ V  +++DMY +F C+  A Q F+ M+E++++TWN 
Sbjct: 134 NLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNA 193

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           I++GY   G S E +++F+ M+ +    + +T  S+I A  ++  L  G  +H  I+R G
Sbjct: 194 IVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTG 253

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
            + +  +  AL+D+Y     + D+ ++FSEMS +D+  WT M+ G+ +  H   AI+ F+
Sbjct: 254 YENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFN 313

Query: 405 EMVK-SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
           +M+    ++ D I  M +L++CSH+G + +G +            N  +   V+D+    
Sbjct: 314 KMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANC 373

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGA 491
           G +++A      M  K D   W  ++  
Sbjct: 374 GNLEDAKRFFYGMGEK-DVVCWNAMIAG 400



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 194/365 (53%), Gaps = 7/365 (1%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           +G   + T L+  Y   G +  AR LF+ M ER+VV+W  +++GY+      +A  +F  
Sbjct: 154 EGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNL 213

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT-CC 161
           M R  +  + +T+ S++ A   +  L     +HG  I+ G E   +++ +LMD+Y +  C
Sbjct: 214 MRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNC 273

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEML-LEGVEMNPYSFSIA 220
           +  D+A  VF++M  K+  +WT ++TG++   +    +  F +ML ++ ++++  +    
Sbjct: 274 V--DDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGI 331

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           + +C+ +G +  G+ +HA  IK  F +N+ V ++++DMY     L DA ++F  M EKD+
Sbjct: 332 LSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDV 391

Query: 281 ITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           + WN +IAG   +G  ++ +++F +MK     P+  TF S++ AC+    +  G Q+   
Sbjct: 392 VCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYH 451

Query: 340 IVRRG-LDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHGHGK 397
           +V+   +  NL     +ID+  + G +  +    + M  + D   +++++     HG+ K
Sbjct: 452 MVKTSHVIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIK 511

Query: 398 EAIEL 402
              E+
Sbjct: 512 LGHEI 516



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 101/198 (51%), Gaps = 12/198 (6%)

Query: 302 FSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK 361
            S   ++R SP      SI+     L  L   QQ+HA I+  GL  N  L+N+L++ Y  
Sbjct: 12  LSSNPTQRLSPLAQPHASILRKLKDLKPL---QQIHAQIITSGLTHNTFLSNSLMNAYVY 68

Query: 362 CGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAV 421
           CG ++D+++IF     +++V+WT ++ G   +    EAI++F EM+    +P+ +   +V
Sbjct: 69  CGLLADAKQIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSV 128

Query: 422 LTACSHAGLVDEGLKYFKSMNDYNVNPNKE----IYGCVVDLLGRAGRVKEAYELIKSMP 477
           L A ++ GL+    +  KS++ + V    E    +   +VD+  + G +  A +L +SM 
Sbjct: 129 LPAFANLGLI----RIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMS 184

Query: 478 FKPDESVWGPLLGACKEH 495
            + +   W  ++    +H
Sbjct: 185 -ERNVVTWNAIVSGYSDH 201


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/565 (33%), Positives = 324/565 (57%), Gaps = 7/565 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +L +N++K YF    +E+AR +FD MPE+D + W  MI+GY     + ++  VF +++  
Sbjct: 155 LLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINE 214

Query: 107 E-VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
                +  TL  +L A   ++ L     +H +A K G     YV    + +Y+ C   + 
Sbjct: 215 SCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCG-KIK 273

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A  +F + +  + V++  +I GY  +G     L +FKE++L G ++     S  V    
Sbjct: 274 MASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKS---STLVSLVP 330

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
            +G +     IH   +K  F S+  V  ++  +Y + + +  A + FDE  EK L +WN 
Sbjct: 331 VSGHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNA 390

Query: 286 IIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I+GY ++G +E  +++F +M++  FSPN  T T I++ACA L ALS G+ VH  +    
Sbjct: 391 MISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTD 450

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
            + ++ ++ ALI MYAKCG+I++++++F  M  ++ VTW +M+ GYG HGHG+EA+ +F 
Sbjct: 451 FESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFS 510

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRA 463
           EM+ SG+ P  + F+ VL ACSHAGLV EG + F SM + Y   P+ + Y CVVD+LGRA
Sbjct: 511 EMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRA 570

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G ++ A + I++MP +P  SVW  LLGAC+ H+  NL +  + ++ +L P+ +G +++LS
Sbjct: 571 GHLQRALQFIEAMPIQPGPSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLS 630

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           NI++A+  + + A  R+  +     K  G + IE+ +    F + D+     + ++  LE
Sbjct: 631 NIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKAIHEKLE 690

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGE 608
            L   M E  Y+P+ +  +HD+E E
Sbjct: 691 KLEGKMREAGYQPETELALHDVEEE 715



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 103/451 (22%), Positives = 211/451 (46%), Gaps = 8/451 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN- 106
           L T L +   D G I  AR +F  +   DV  + V++ G++     + +  VF  + ++ 
Sbjct: 54  LLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLAVFAHLRKST 113

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           ++ PN+ T +  + A  G +      ++HG AI +G +  + + ++++ +Y      +++
Sbjct: 114 DLKPNSSTYAFAISAASGFRDDRAGCVIHGQAIVDGCDSELLLGSNIVKMYFKFW-RVED 172

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG-VEMNPYSFSIAVRACA 225
           AR VF+ M  K+ + W T+I+GY  +      + VF++++ E    ++  +    + A A
Sbjct: 173 ARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVA 232

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               +  G  IH+   K G  S+  V+   + +Y +   +  A+  F E    D++ +N 
Sbjct: 233 ELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNA 292

Query: 286 IIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I GY  +G +E  L++F ++          T  S++     L  +     +H   ++  
Sbjct: 293 MIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLIYA---IHGYSLKSN 349

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
              + +++ AL  +Y+K   I  ++K+F E  ++ L +W +M+ GY  +G  ++AI LF 
Sbjct: 350 FLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFR 409

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
           EM  S   P+ +    +L+AC+  G +  G      +   +   +  +   ++ +  + G
Sbjct: 410 EMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCG 469

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            + EA  L   MP K +E  W  ++     H
Sbjct: 470 SIAEARRLFDFMP-KKNEVTWNTMISGYGLH 499



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 110/466 (23%), Positives = 208/466 (44%), Gaps = 43/466 (9%)

Query: 123 KGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSW 182
           K   S+S+ A  H   +  G    I +   L    +    ++  AR +F  ++  +   +
Sbjct: 28  KRSTSISHLAQTHAQIVLHGFRNDISLLTKLTQRLSDLG-AIYYARDIFLSVQRPDVFLF 86

Query: 183 TTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS--FGKLIHAAV 240
             L+ G++ + + +  L VF   L +  ++ P S + A    A++G+     G +IH   
Sbjct: 87  NVLMRGFSVNESPHSSLAVFAH-LRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIHGQA 145

Query: 241 IKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECL 299
           I  G  S L + ++I+ MY +F  + DA + FD M EKD I WNT+I+GY K+    E +
Sbjct: 146 IVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESI 205

Query: 300 NMFSKMKSERFSP-NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDM 358
            +F  + +E  +  +  T   I+ A A L  L  G Q+H+   + G   +  +    I +
Sbjct: 206 QVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISL 265

Query: 359 YAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVF 418
           Y+KCG I  +  +F E    D+V + +M+ GY ++G  + ++ LF E++ SG +      
Sbjct: 266 YSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTL 325

Query: 419 MAVLTACSHAGLVDEGLKY-------------------FKSMND-------YNVNPNKEI 452
           ++++    H  L+     Y                   +  +N+       ++ +P K +
Sbjct: 326 VSLVPVSGHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSL 385

Query: 453 --YGCVVDLLGRAGRVKEAYELIKSMP---FKPDESVWGPLLGACKEHRLPNLGKLA--A 505
             +  ++    + G  ++A  L + M    F P+      +L AC +    +LGK     
Sbjct: 386 PSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDL 445

Query: 506 LRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEV 551
           +R  D + ++  +  ++  +YA  G     A+ R++   M  K EV
Sbjct: 446 VRSTDFESSIYVSTALI-GMYAKCGS---IAEARRLFDFMPKKNEV 487


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/563 (36%), Positives = 318/563 (56%), Gaps = 3/563 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + + T LI  Y   G  E AR +FD +  +D+VSWT M+A Y    C  ++  +F  M  
Sbjct: 180 AFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRI 239

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
               PN FT +SVLKAC G++  +    VHG A K      ++V   L+D+Y      +D
Sbjct: 240 VGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSG-DVD 298

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +A  VF +M   + + W+ +I  YA S      + +F  M    V  N ++ +  ++ACA
Sbjct: 299 DALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACA 358

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           S   +  G  IH  V+K G   N+ V N+++DMY +   + ++ Q F E      ++WNT
Sbjct: 359 SLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNT 418

Query: 286 IIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I GY ++G+ E  L +F  M   +      T++S++ ACA +AAL  G Q+H+  V+  
Sbjct: 419 VIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTI 478

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
            D N  + NALIDMYAKCGNI D++ +F  + + D V+W +M+ GY  HG   EA++ F+
Sbjct: 479 YDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFE 538

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRA 463
            M+++  +PD++ F+ +L+ACS+AGL+D G  YFKSM  +Y++ P  E Y C+V LLGR+
Sbjct: 539 SMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRS 598

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G + +A +L+  +PF+P   VW  LL AC  H    LG+++A RVL+++P    T+++LS
Sbjct: 599 GHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEIEPEDEATHVLLS 658

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           NIYA   +W   A  R  M+  G +KE G+SWIE + +V  F   D     T+ + G+LE
Sbjct: 659 NIYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYFSVGDTSHPDTKLINGMLE 718

Query: 584 MLIRHMNETAYEPDIDCLIHDLE 606
            L        Y PD   ++ D+E
Sbjct: 719 WLNMKARNEGYVPDFSSVLLDVE 741



 Score =  234 bits (598), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 146/490 (29%), Positives = 255/490 (52%), Gaps = 8/490 (1%)

Query: 40  LIPKGP--SILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQA 96
           +I KG    + A N L+  Y     + +A  LFDEMP+R+ VS+  +I GY+     ++A
Sbjct: 70  IIKKGNCLDLFANNILLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEA 129

Query: 97  WTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDV 156
             +F  +       N F  S+VLK     +       VH    K G +   +V  +L+D 
Sbjct: 130 IGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDC 189

Query: 157 YATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYS 216
           Y+ C  + + AR VF+ +++K+ VSWT ++  Y  +      L +F  M + G + N ++
Sbjct: 190 YSVCGYA-ECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFT 248

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
           F+  ++AC      + GK +H    K  +   L V   ++D+Y +   + DA Q F+EM 
Sbjct: 249 FASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMP 308

Query: 277 EKDLITWNTIIAGYEKS-GSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ 335
           + D+I W+ +IA Y +S  S E + MF +M+     PN FT  S++ ACA+L  L  G Q
Sbjct: 309 KDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQ 368

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
           +H  +V+ GLD N+ ++NAL+DMYAKCG + +S ++FSE  +   V+W ++++GY   G+
Sbjct: 369 IHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGN 428

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455
           G++A+ LF +M++  V+   + + +VL AC+    ++ G +          + N  +   
Sbjct: 429 GEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNA 488

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL--PNLGKLAALRVLDLKP 513
           ++D+  + G +K+A  L+  M  + D+  W  ++     H L    L    ++   + KP
Sbjct: 489 LIDMYAKCGNIKDA-RLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKP 547

Query: 514 NMMGTYIILS 523
           + +    ILS
Sbjct: 548 DKVTFVGILS 557



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/382 (29%), Positives = 191/382 (50%), Gaps = 7/382 (1%)

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           N +   S+L++C      +    +H   IK+G    ++  N L++ Y     S+ +A  +
Sbjct: 43  NTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKY-DSLPDAAKL 101

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F++M  +N VS+ TLI GY+        +G+F  +  EG E+NP+ FS  ++   S  W 
Sbjct: 102 FDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWA 161

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
             G  +HA V K GF S+  V  +++D Y        A Q FD +  KD+++W  ++A Y
Sbjct: 162 KLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACY 221

Query: 291 -EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
            E     E L +FS+M+   F PN FTF S++ AC  L   + G+ VH    +      L
Sbjct: 222 VENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEEL 281

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
            +   LID+Y K G++ D+ ++F EM   D++ W+ M+  Y      +EAIE+F  M + 
Sbjct: 282 FVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRG 341

Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGL--KYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
            V P++    ++L AC  A LVD  L  +    +    ++ N  +   ++D+  + GR++
Sbjct: 342 LVLPNQFTLASLLQAC--ASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRME 399

Query: 468 EAYELIKSMPFKPDESVWGPLL 489
            + +L    P   D S W  ++
Sbjct: 400 NSLQLFSESPNCTDVS-WNTVI 420



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 159/329 (48%), Gaps = 49/329 (14%)

Query: 211 EMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQ 270
           E N Y +   +++C   G  + GK +H  +IK G   +L   N +L+ Y ++D L DA +
Sbjct: 41  EFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAK 100

Query: 271 YFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAA 329
            FDEM +++ +++ T+I GY +    SE + +FS+++ E    N F F++++    +   
Sbjct: 101 LFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEW 160

Query: 330 LSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIG 389
              G  VHA + + G D +  +  ALID Y+ CG    ++++F  +  +D+V+WT M+  
Sbjct: 161 AKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVAC 220

Query: 390 YGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN 449
           Y  +   +E+++LF  M   G +P+   F +VL AC        GL+ F        N  
Sbjct: 221 YVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACV-------GLEVF--------NVG 265

Query: 450 KEIYGC---------------VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA--- 491
           K ++GC               ++DL  ++G V +A ++ + MP K D   W  ++     
Sbjct: 266 KAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMP-KDDVIPWSFMIARYAQ 324

Query: 492 -----------CKEHR---LPNLGKLAAL 506
                      C+  R   LPN   LA+L
Sbjct: 325 SEQSEEAIEMFCRMRRGLVLPNQFTLASL 353


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/568 (35%), Positives = 324/568 (57%), Gaps = 6/568 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + LAT L   Y   G +  A+ +FD++  ++   W  MI GY   N  ++A  ++++M+ 
Sbjct: 58  TYLATKLAACYAVCGHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLH 117

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
               P+ FT   VLKAC  +        VH + +  GLE  +YV NS++ +Y      ++
Sbjct: 118 FGQKPDNFTYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFG-DVE 176

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            AR+VF+ M  ++  SW T+++G+  +G   G   VF +M  +G   +  +    + AC 
Sbjct: 177 AARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACG 236

Query: 226 STGWVSFGKLIHAAVIKHGFGS---NLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
               +  GK IH  V+++G      N  +MNSI+DMYC  + +S A + F+ +  KD+++
Sbjct: 237 DVMDLKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVS 296

Query: 283 WNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           WN++I+GYEK G + + L +F +M      P+  T  S++AAC  ++AL  G  V + +V
Sbjct: 297 WNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVV 356

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           +RG   N+ +  ALI MYA CG++  + ++F EM +++L   T M+ G+G HG G+EAI 
Sbjct: 357 KRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAIS 416

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLL 460
           +F EM+  GV PD  +F AVL+ACSH+GLVDEG + F  M  DY+V P    Y C+VDLL
Sbjct: 417 IFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLL 476

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520
           GRAG + EAY +I++M  KP+E VW  LL AC+ HR   L  ++A ++ +L P+ +  Y+
Sbjct: 477 GRAGYLDEAYAVIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLFELNPDGVSGYV 536

Query: 521 ILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYG 580
            LSNIYAAE +WE+    R ++     +K    S++E+   V  F   D     +  +Y 
Sbjct: 537 CLSNIYAAERRWEDVENVRALVAKRRLRKPPSYSFVELNKMVHQFFVGDTSHEQSDDIYA 596

Query: 581 VLEMLIRHMNETAYEPDIDCLIHDLEGE 608
            L+ L   + +  Y+PD   +++D+E E
Sbjct: 597 KLKDLNEQLKKAGYKPDTSLVLYDVEEE 624



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 10/129 (7%)

Query: 316 TFTSIIAACATL-------AALSCGQQVHAGIVRRG-LDGNLALANALIDMYAKCGNISD 367
           TF S+   C TL        +L+   Q+HA +   G L  N  LA  L   YA CG++  
Sbjct: 19  TFDSL--QCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPY 76

Query: 368 SQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH 427
           +Q IF ++  ++   W SM+ GY  +     A+ L+ +M+  G +PD   +  VL AC  
Sbjct: 77  AQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGD 136

Query: 428 AGLVDEGLK 436
             L + G K
Sbjct: 137 LLLREMGRK 145


>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
          Length = 762

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/569 (35%), Positives = 317/569 (55%), Gaps = 15/569 (2%)

Query: 43  KGPSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFV 101
           K PS    N L++ Y D G   + + +FDEM  +++VSW ++I+ Y       +A  +F 
Sbjct: 118 KNPSGSIENCLLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFS 177

Query: 102 EMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
           +M  + + PN+    S+L++C G   L     +H   I+  L  +I VE ++ ++Y  C 
Sbjct: 178 DMQASGIRPNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCG 237

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
             ++ A+LVF+ M  +N V+WT L+ GY  +      L +F  M +EGVE++ + FSI +
Sbjct: 238 W-LEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVL 296

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
           + C        G+ IH+ ++K G  S + V   ++D Y +   +  A + F  ++E + +
Sbjct: 297 KVCCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDV 356

Query: 282 TWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           +W+ +I+G+ +SG  E C+ +F+ ++SE    N F +TS+  ACA  A L+ G Q H   
Sbjct: 357 SWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDA 416

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           ++RGL   L   +A++ MY+KCG +  +++ F  + + D V WT+++ GY  HG+  EA+
Sbjct: 417 IKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEAL 476

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDL 459
             F  M   GVRP+ + F+AVLTACSH+GLV E  +Y  SM+ DY V P  + Y C++D 
Sbjct: 477 GFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMIDT 536

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
             RAG ++EA ELI  MPF+PD   W  LLG C  H    LGK+AA  +  L P     Y
Sbjct: 537 YSRAGLLQEALELINRMPFEPDAMSWKSLLGGCWAHCDLKLGKIAAENLFRLDPGDTAGY 596

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVY 579
           I+L N+Y+A GKWEE    RK+M     KKEV  SWI V+ +V  F+  D+    T+ +Y
Sbjct: 597 ILLFNLYSAFGKWEEAGHVRKLMAERELKKEVSCSWISVKGQVHRFVVGDRHHPQTEAIY 656

Query: 580 GVLEML--------IRHMNETAYEPDIDC 600
             LE          +R +NE   E D+ C
Sbjct: 657 SKLEEFKCSVIDSPVRLLNE---EDDVSC 682



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 148/304 (48%), Gaps = 3/304 (0%)

Query: 202 FKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR 261
            KEM    V + P+S+     AC     ++ G+LIH  + +     +  + N +L MYC 
Sbjct: 75  LKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGSIENCLLRMYCD 134

Query: 262 FDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSI 320
                D  + FDEM  K+L++W  +I+ Y K+G  E  + +FS M++    PN   + S+
Sbjct: 135 CGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSL 194

Query: 321 IAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDL 380
           + +C   + L  G+Q+H+ ++R  L+ N+ +  A+ +MY +CG +  ++ +F  M  ++ 
Sbjct: 195 LQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNA 254

Query: 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS 440
           VTWT +M+GY      + A+ELF  M   GV  D  VF  VL  C      D G +    
Sbjct: 255 VTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGLEDWDMGRQIHSH 314

Query: 441 MNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL-GACKEHRLPN 499
           +          +   +VD   + G ++ AY     +  +P++  W  L+ G  +  RL +
Sbjct: 315 IVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRIS-EPNDVSWSALISGFSQSGRLED 373

Query: 500 LGKL 503
             K+
Sbjct: 374 CIKI 377



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 100/201 (49%)

Query: 297 ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALI 356
           E  +   +M     S    ++  +  AC  L +L+ G+ +H  + R   + + ++ N L+
Sbjct: 70  EAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGSIENCLL 129

Query: 357 DMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI 416
            MY  CG+  D QK+F EM  ++LV+W  ++  Y  +G  ++AI LF +M  SG+RP+  
Sbjct: 130 RMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSA 189

Query: 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
           V+M++L +C     ++ G +    +    +N N  +   + ++  R G ++ A  +   M
Sbjct: 190 VYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGM 249

Query: 477 PFKPDESVWGPLLGACKEHRL 497
             +   +  G ++G  +  +L
Sbjct: 250 DAQNAVTWTGLMVGYTQAKKL 270


>gi|224115126|ref|XP_002332220.1| predicted protein [Populus trichocarpa]
 gi|222831877|gb|EEE70354.1| predicted protein [Populus trichocarpa]
          Length = 673

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/557 (34%), Positives = 316/557 (56%), Gaps = 14/557 (2%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+  Y   G++  AR +FD +P R+VV WT ++ GY   +    A  VF +M+ +   P+
Sbjct: 21  LVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQNSQPEVAVEVFGDMLESGSFPS 80

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
            FTLS  L AC  ++S++     H   IK  +     + N+L  +Y+    S+D++   F
Sbjct: 81  NFTLSIALNACSSLESITLGKQFHAFIIKYRISHDSSIGNALCSLYSKFG-SLDSSVKAF 139

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
            +   K+ +SWTT+I+    +G    GL +F EML E VE N ++ +  +  C++     
Sbjct: 140 RETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLFENVEPNDFTLTSVLSLCSTIQSSD 199

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            G  +H+   K G  SNL + NS++ +Y +  C+ +A   F+ M  K+LITWN +IAG+ 
Sbjct: 200 LGMQVHSLSTKLGHESNLRITNSLVYLYLKCGCIDEAKNLFNRMEYKNLITWNAMIAGHA 259

Query: 292 KS------------GSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           ++              +E L M+ K+      P+ FT +SI+  C+ LAAL  G+Q+HA 
Sbjct: 260 QAMDLAKDNFSAQQTGTEALGMYLKLNRSGRKPDLFTLSSILTVCSRLAALEQGEQIHAQ 319

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
            ++ G   ++ +  AL+DMY KCG+I  ++K F +MS R L++WTSM+  +  HG  + A
Sbjct: 320 TIKSGFLSDVVVGTALVDMYDKCGSIERARKAFLDMSTRTLISWTSMITSFARHGQSQHA 379

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVD 458
           ++LF++M  +G RP++I F+ VL ACSHAG+VDE L+YF+ M  +Y + P  + YGC+VD
Sbjct: 380 LQLFEDMRLAGFRPNQITFVGVLAACSHAGMVDEALEYFEIMQKEYKIKPVMDHYGCLVD 439

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518
           +  R GR+ EA+++IK M  +P+E +W  L+  C+ H    LG  AA ++L LKP    T
Sbjct: 440 MFVRLGRLDEAFDVIKRMDVEPNEFIWLLLIAGCRNHGNEELGFYAAEQLLKLKPRSTET 499

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
           Y++L N+Y +  +WE+ +  R++M+     K    S I ++ +V  F  N+++ +H   +
Sbjct: 500 YVVLLNMYISAERWEDVSMVRRLMKEEKVGKLKDWSRISIKGEVHSFKTNNRLHNHNAEL 559

Query: 579 YGVLEMLIRHMNETAYE 595
           + +L  L+       YE
Sbjct: 560 HTLLNDLVDRAKSLGYE 576



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 121/425 (28%), Positives = 221/425 (52%), Gaps = 17/425 (4%)

Query: 133 LVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHS 192
           +VH   IK G     +V + L++VYA C + M NAR VF+++  +N V WTTL+TGY  +
Sbjct: 1   MVHAHVIKTGTHEEFFVMSFLVNVYAKCGV-MVNARKVFDNLPRRNVVVWTTLMTGYVQN 59

Query: 193 GNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVM 252
                 + VF +ML  G   + ++ SIA+ AC+S   ++ GK  HA +IK+    +  + 
Sbjct: 60  SQPEVAVEVFGDMLESGSFPSNFTLSIALNACSSLESITLGKQFHAFIIKYRISHDSSIG 119

Query: 253 NSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSEC-LNMFSKMKSERFS 311
           N++  +Y +F  L  + + F E  EKD+I+W TII+    +G +   L +F +M  E   
Sbjct: 120 NALCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLFENVE 179

Query: 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKI 371
           PN FT TS+++ C+T+ +   G QVH+   + G + NL + N+L+ +Y KCG I +++ +
Sbjct: 180 PNDFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHESNLRITNSLVYLYLKCGCIDEAKNL 239

Query: 372 FSEMSDRDLVTWTSMMIG-----------YGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420
           F+ M  ++L+TW +M+ G           + A   G EA+ ++ ++ +SG +PD     +
Sbjct: 240 FNRMEYKNLITWNAMIAGHAQAMDLAKDNFSAQQTGTEALGMYLKLNRSGRKPDLFTLSS 299

Query: 421 VLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKP 480
           +LT CS    +++G +            +  +   +VD+  + G ++ A +    M  + 
Sbjct: 300 ILTVCSRLAALEQGEQIHAQTIKSGFLSDVVVGTALVDMYDKCGSIERARKAFLDMSTRT 359

Query: 481 DESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKF 538
             S W  ++ +   H      L     +R+   +PN + T++ +    +  G  +E  ++
Sbjct: 360 LIS-WTSMITSFARHGQSQHALQLFEDMRLAGFRPNQI-TFVGVLAACSHAGMVDEALEY 417

Query: 539 RKIMR 543
            +IM+
Sbjct: 418 FEIMQ 422



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 185/383 (48%), Gaps = 39/383 (10%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S +   L   Y   G ++ +   F E  E+DV+SWT +I+             +F+EM+ 
Sbjct: 116 SSIGNALCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLF 175

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISM 164
             V PN FTL+SVL  C  ++S      VH ++ K G E ++ + NSL+ +Y  C CI  
Sbjct: 176 ENVEPNDFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHESNLRITNSLVYLYLKCGCI-- 233

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHS-----------GNGYGGLGVFKEMLLEGVEMN 213
           D A+ +FN M++KN ++W  +I G+A +             G   LG++ ++   G + +
Sbjct: 234 DEAKNLFNRMEYKNLITWNAMIAGHAQAMDLAKDNFSAQQTGTEALGMYLKLNRSGRKPD 293

Query: 214 PYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFD 273
            ++ S  +  C+    +  G+ IHA  IK GF S++ V  +++DMY +   +  A + F 
Sbjct: 294 LFTLSSILTVCSRLAALEQGEQIHAQTIKSGFLSDVVVGTALVDMYDKCGSIERARKAFL 353

Query: 274 EMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSC 332
           +M+ + LI+W ++I  + + G S+  L +F  M+   F PN  TF  ++AAC+       
Sbjct: 354 DMSTRTLISWTSMITSFARHGQSQHALQLFEDMRLAGFRPNQITFVGVLAACS------- 406

Query: 333 GQQVHAGIVRRGLDGNLALAN------------ALIDMYAKCGNISDSQKIFSEMSDRDL 380
               HAG+V   L+    +               L+DM+ + G + ++  +   M D + 
Sbjct: 407 ----HAGMVDEALEYFEIMQKEYKIKPVMDHYGCLVDMFVRLGRLDEAFDVIKRM-DVEP 461

Query: 381 VTWTSMMIGYGAHGHGKEAIELF 403
             +  +++  G   HG E +  +
Sbjct: 462 NEFIWLLLIAGCRNHGNEELGFY 484


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 216/597 (36%), Positives = 331/597 (55%), Gaps = 40/597 (6%)

Query: 15  CHKIPPIIKQSLQSVKK--SSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEM 72
           C+KI  +     +++KK  S I  D  L P  PS L   L+++Y   G     R +FDE+
Sbjct: 41  CNKILDV-NPDAKTLKKLHSKILIDQNLHP-NPS-LGIKLMRAYAACGEPCYTRHIFDEI 97

Query: 73  PERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAA 132
            +++VV + VMI  Y +   +  A  VF  M      P+ +T   VLKAC    +L    
Sbjct: 98  TDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGL 157

Query: 133 LVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHS 192
            +HG  +K GL+ ++Y+ N L+ +Y  C   +D AR V ++M  ++ VSW +++ GYA +
Sbjct: 158 QIHGAVVKLGLDMNLYIGNGLVSMYGKC-KWLDAARRVLDEMPGRDMVSWNSMVAGYAQN 216

Query: 193 GNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVM 252
           G     L + +EM  E +++ P + ++                          GS LP  
Sbjct: 217 GRFNDALKLCREM--EDLKLKPDAGTM--------------------------GSLLP-- 246

Query: 253 NSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFS 311
            ++ +  C  D +      F ++ EK LI+WN +IA Y  +   +E ++++ +M+     
Sbjct: 247 -AVTNTSC--DNVLYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVE 303

Query: 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKI 371
           P+  + +S++ AC  L+A   G+++H  + R+ L  NL L NALIDMYAKCG + +++ +
Sbjct: 304 PDAVSISSVLPACGDLSAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAV 363

Query: 372 FSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLV 431
           F +M  RD+V+WTSM+  YG  G GK+A+ LF +M  SG  PD I F++VL ACSHAGLV
Sbjct: 364 FDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLAACSHAGLV 423

Query: 432 DEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
           DEG   F  M +Y + P  E Y C+VDLLGRAG++ EAY L + MP +P+E VWG LL A
Sbjct: 424 DEGRYCFNLMAEYGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSA 483

Query: 492 CKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEV 551
           C+ +   N+  LAA  +  L P   G Y++LSNIYA  G+W++    R IM   G KK  
Sbjct: 484 CRVYSSMNIALLAADHLFQLAPEQSGYYVLLSNIYAKAGRWQDVETVRSIMNSKGIKKIP 543

Query: 552 GMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           G S +E+ D V  F+A D+  + ++ +Y  L +L+  M E  Y P+ D  +HD+E E
Sbjct: 544 GNSNVEINDHVYTFLAGDQSHTQSKEIYKALGVLVGRMKELGYMPETDSALHDVEEE 600


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 220/655 (33%), Positives = 335/655 (51%), Gaps = 89/655 (13%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPE--RDVVSWTVMIAGYTSFNCHNQAWT 98
           IPK   +  T L+ +Y   G ++ A+ LF+  P   RD VS+  MI  Y+  N  + A  
Sbjct: 66  IPKPDIVARTTLLSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALN 125

Query: 99  VFVEMVRNEVNPNAFTLSSVLKACKGMKSLS-NAALVHGMAIKEGLEGSIYVENSLMDVY 157
           +FV+M R    P+ FT SSVL A   +     +  ++H   IK G      V N+L+  Y
Sbjct: 126 LFVQMKRYGFLPDPFTFSSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCY 185

Query: 158 ATCCIS--------MDNARLVFND---------------------------------MKW 176
             C  S        M +AR VF++                                 + +
Sbjct: 186 VCCASSPLVKSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTY 245

Query: 177 KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS----TGWVSF 232
             DV+W  +I+GY   G        F+ M   G++ + Y+++  + AC S     G  + 
Sbjct: 246 PIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNC 305

Query: 233 GKLIHAAVIK------HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
           G+ +H  +++      H F   L V N+++  Y ++D + +A + FD+M  +D+I+WN +
Sbjct: 306 GRQVHGYILRTVVEPSHHFV--LSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAV 363

Query: 287 IAGY------EKSGS--------------------------SECLNMFSKMKSERFSPNC 314
           ++GY      E++ S                           E L +F++MKSE   P  
Sbjct: 364 LSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCD 423

Query: 315 FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSE 374
           + F   I AC+ L +L  GQQ+H+ ++R G D  L+  NALI MY++CG +  ++ +F  
Sbjct: 424 YAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLT 483

Query: 375 MSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434
           M   D V+W +M+     HGHG +AIELF++M+K  + PDRI F+ +LTAC+HAGL+ EG
Sbjct: 484 MPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEG 543

Query: 435 LKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACK 493
             YF +M   Y + P ++ Y  ++DLL RAG   +A  +IKSMPF+    +W  LL  C+
Sbjct: 544 RHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCR 603

Query: 494 EHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGM 553
            H    LG  AA R+L+L P   GTYIILSN+YAA G+W+E A+ R +MR  G KKE G 
Sbjct: 604 IHGNMELGIQAADRLLELIPGQDGTYIILSNMYAALGQWDEVARVRLLMRERGVKKEPGC 663

Query: 554 SWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           SW+EV + V  F+ +D      Q VY  L+ L+  M +  Y PD   ++HD+E E
Sbjct: 664 SWVEVENMVHVFLVDDARHPEVQAVYTYLQQLVNEMKKLGYVPDTKFVLHDMESE 718



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 59/276 (21%), Positives = 124/276 (44%), Gaps = 52/276 (18%)

Query: 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEK 292
            + +HA ++  GF  N  ++N ++++YC+   ++ A + FD++ + D++   T+++ Y  
Sbjct: 24  ARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSS 83

Query: 293 SGSSE----------------------------------CLNMFSKMKSERFSPNCFTFT 318
           SG+ +                                   LN+F +MK   F P+ FTF+
Sbjct: 84  SGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFS 143

Query: 319 SIIAACATLA--ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGN---------ISD 367
           S+++A + +A     C Q +H  +++ G     ++ NAL+  Y  C +         ++ 
Sbjct: 144 SVLSALSLIADEERHC-QMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMAS 202

Query: 368 SQKIFSEMSDRDLV--TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTAC 425
           ++K+F E     +   +WT+M+ GY  +     A EL D +      P  + + A+++  
Sbjct: 203 ARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTY----PIDVAWNAMISGY 258

Query: 426 SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461
              GL +E    F+ M+   +  ++  Y  ++   G
Sbjct: 259 VRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACG 294


>gi|225454363|ref|XP_002276073.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial [Vitis vinifera]
          Length = 673

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/530 (36%), Positives = 312/530 (58%), Gaps = 7/530 (1%)

Query: 68  LFDEMPERDVVSWTVMIAGYTSFNCH----NQAWTVFVEMVRNEVNPNAFTLSSVLKACK 123
           +FDEMP ++VVSW  +I G    NC        +  F +MV   + PN  TL+ +L+A  
Sbjct: 130 MFDEMPLKNVVSWNTLICGVVEGNCKFALVRLGFHYFRQMVLEMMAPNCITLNGLLRASI 189

Query: 124 GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWT 183
            +  +     +H   +K G + + +V ++L+D YA   + +D A+  F+++  ++ V W 
Sbjct: 190 ELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGL-VDEAQSAFDEVSSRDLVLWN 248

Query: 184 TLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH 243
            +++ YA +G      GVFK M LEGV+ + ++F+  + +C   G    GK +H  +I+ 
Sbjct: 249 VMVSCYALNGVQGKAFGVFKLMRLEGVKGDNFTFTSMINSCGVLGSCGLGKQVHGLIIRL 308

Query: 244 GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMF 302
            F  ++ V ++++DMY + + + DA + FD M  K++++W T+I GY + G   E + + 
Sbjct: 309 SFDLDVLVASALVDMYSKNENIEDARKAFDGMIVKNIVSWTTMIVGYGQHGDGKEAMRLL 368

Query: 303 SKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362
            +M      P+     SI+++C  L+A S   QVHA +V  G +  L++ANAL+  Y+KC
Sbjct: 369 QEMIRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVENGFEAFLSIANALVSAYSKC 428

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
           G+I  + + FS +++ D+++WTS+M  Y  HG  KE +E+F++M+ S VRPD++ F+ VL
Sbjct: 429 GSIGSAFQSFSSVAEPDIISWTSLMGAYAFHGLSKEGVEVFEKMLFSNVRPDKVAFLGVL 488

Query: 423 TACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481
           +AC+H G V EGL YF  M N Y + P+ E Y C++DLLGRAG + EA  L+ SMP +P 
Sbjct: 489 SACAHGGFVLEGLHYFNLMINVYQIMPDSEHYTCIIDLLGRAGFLDEAINLLTSMPVEPR 548

Query: 482 ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKI 541
               G  LGACK HR   L + A+ ++  ++PN    Y ++SN+YA+ G W + A+ RK+
Sbjct: 549 SDTLGAFLGACKVHRNVGLARWASEKLFVMEPNEPANYSLMSNMYASVGHWFDVARVRKL 608

Query: 542 MRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNE 591
           MR     K  G SW+E+  +V  F++ DK       VYG+L++L+R M E
Sbjct: 609 MRERCDFKVPGCSWMEIAGEVHTFVSRDKTHPRAVQVYGMLDLLVRLMEE 658



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/415 (29%), Positives = 214/415 (51%), Gaps = 9/415 (2%)

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMK 175
           S  LK    +  L     +H   IK G    + ++N ++ VY  C    D  ++ F++M 
Sbjct: 77  SHALKISAKLGFLHGGKQLHAHVIKLGNCNLLSLQNQVLHVYVKCKEFNDVCKM-FDEMP 135

Query: 176 WKNDVSWTTLITGYAHSGNGYG----GLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
            KN VSW TLI G       +     G   F++M+LE +  N  + +  +RA      V 
Sbjct: 136 LKNVVSWNTLICGVVEGNCKFALVRLGFHYFRQMVLEMMAPNCITLNGLLRASIELNDVG 195

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
             + +H  ++K GF SN  V ++++D Y +F  + +A   FDE++ +DL+ WN +++ Y 
Sbjct: 196 ICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYA 255

Query: 292 KSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
            +G   +   +F  M+ E    + FTFTS+I +C  L +   G+QVH  I+R   D ++ 
Sbjct: 256 LNGVQGKAFGVFKLMRLEGVKGDNFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVL 315

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           +A+AL+DMY+K  NI D++K F  M  +++V+WT+M++GYG HG GKEA+ L  EM++  
Sbjct: 316 VASALVDMYSKNENIEDARKAFDGMIVKNIVSWTTMIVGYGQHGDGKEAMRLLQEMIRVY 375

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470
             PD +   ++L++C +     E ++    + +        I   +V    + G +  A+
Sbjct: 376 TYPDELALASILSSCGNLSATSEVVQVHAYVVENGFEAFLSIANALVSAYSKCGSIGSAF 435

Query: 471 ELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVL--DLKPNMMGTYIILS 523
           +   S+  +PD   W  L+GA   H L   G     ++L  +++P+ +    +LS
Sbjct: 436 QSFSSVA-EPDIISWTSLMGAYAFHGLSKEGVEVFEKMLFSNVRPDKVAFLGVLS 489



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 112/406 (27%), Positives = 193/406 (47%), Gaps = 39/406 (9%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + + L+ SY   GL++EA++ FDE+  RD+V W VM++ Y       +A+ VF  M   
Sbjct: 214 FVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGVQGKAFGVFKLMRLE 273

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V  + FT +S++ +C  + S      VHG+ I+   +  + V ++L+D+Y+    ++++
Sbjct: 274 GVKGDNFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVASALVDMYSK-NENIED 332

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR  F+ M  KN VSWTT+I GY   G+G   + + +EM+      +  + +  + +C +
Sbjct: 333 ARKAFDGMIVKNIVSWTTMIVGYGQHGDGKEAMRLLQEMIRVYTYPDELALASILSSCGN 392

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
               S    +HA V+++GF + L + N+++  Y +   +  A Q F  + E D+I+W ++
Sbjct: 393 LSATSEVVQVHAYVVENGFEAFLSIANALVSAYSKCGSIGSAFQSFSSVAEPDIISWTSL 452

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           +  Y   G S E + +F KM      P+   F  +++ACA           H G V  GL
Sbjct: 453 MGAYAFHGLSKEGVEVFEKMLFSNVRPDKVAFLGVLSACA-----------HGGFVLEGL 501

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
                  N +I++Y     + DS+             +T ++   G  G   EAI L   
Sbjct: 502 H----YFNLMINVYQI---MPDSEH------------YTCIIDLLGRAGFLDEAINLLTS 542

Query: 406 MVKSGVRPDRIVFMAVLTACS-HAGLVDEGLKYFKSMNDYNVNPNK 450
           M    V P      A L AC  H  +   GL  + S   + + PN+
Sbjct: 543 M---PVEPRSDTLGAFLGACKVHRNV---GLARWASEKLFVMEPNE 582



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 137/271 (50%), Gaps = 6/271 (2%)

Query: 215 YSFSI-AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFD 273
           +SFS  A++  A  G++  GK +HA VIK G  + L + N +L +Y +    +D  + FD
Sbjct: 73  HSFSSHALKISAKLGFLHGGKQLHAHVIKLGNCNLLSLQNQVLHVYVKCKEFNDVCKMFD 132

Query: 274 EMTEKDLITWNTIIAGYEKSGSSECL-----NMFSKMKSERFSPNCFTFTSIIAACATLA 328
           EM  K++++WNT+I G  +      L     + F +M  E  +PNC T   ++ A   L 
Sbjct: 133 EMPLKNVVSWNTLICGVVEGNCKFALVRLGFHYFRQMVLEMMAPNCITLNGLLRASIELN 192

Query: 329 ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMI 388
            +   +Q+H  I++ G D N  + +AL+D YAK G + ++Q  F E+S RDLV W  M+ 
Sbjct: 193 DVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVS 252

Query: 389 GYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP 448
            Y  +G   +A  +F  M   GV+ D   F +++ +C   G    G +    +   + + 
Sbjct: 253 CYALNGVQGKAFGVFKLMRLEGVKGDNFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDL 312

Query: 449 NKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
           +  +   +VD+  +   +++A +    M  K
Sbjct: 313 DVLVASALVDMYSKNENIEDARKAFDGMIVK 343


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/563 (35%), Positives = 321/563 (57%), Gaps = 4/563 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            +A +LI  Y   G    AR+LFD+MP RD+ SW  MI+G        QA  V  EM   
Sbjct: 251 FVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLE 310

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            +  N  T+ S+L  C  +  +S A L+H   IK GLE  ++V N+L+++YA    ++++
Sbjct: 311 GIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFG-NLED 369

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR  F  M   + VSW ++I  Y  + +     G F +M L G + +  +        A 
Sbjct: 370 ARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQ 429

Query: 227 TGWVSFGKLIHAAVIKHGF-GSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           +      + +H  +++ G+   ++ + N+++DMY +   L  A++ F+ +  KD+I+WNT
Sbjct: 430 SRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNT 489

Query: 286 IIAGYEKSG-SSECLNMFSKMKS-ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           +I GY ++G +SE + ++  M+  +   PN  T+ SI+ A A + AL  G ++H  +++ 
Sbjct: 490 LITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKT 549

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
            L  ++ +A  LID+Y KCG + D+  +F ++     VTW +++  +G HGH ++ ++LF
Sbjct: 550 NLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLF 609

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
            EM+  GV+PD + F+++L+ACSH+G V+EG   F+ M +Y + P+ + YGC+VDLLGRA
Sbjct: 610 GEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRA 669

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G ++ AY+ IK MP +PD S+WG LLGAC+ H    LGK A+ R+ ++    +G Y++LS
Sbjct: 670 GYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLS 729

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           NIYA  GKWE   K R + R  G KK  G S IEV  KV  F   ++     + +Y  L 
Sbjct: 730 NIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELR 789

Query: 584 MLIRHMNETAYEPDIDCLIHDLE 606
           +L   M    Y PD   ++ D+E
Sbjct: 790 VLTAKMKSLGYIPDYSFVLQDVE 812



 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 145/496 (29%), Positives = 263/496 (53%), Gaps = 15/496 (3%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR- 105
            ++T L+  Y + G +  +R  FD++P++DV +W  MI+ Y      ++A   F +++  
Sbjct: 152 FISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLV 211

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           +E+ P+ +T   VLKAC    +L +   +H  A K G + +++V  SL+ +Y+    +  
Sbjct: 212 SEIRPDFYTFPPVLKAC---GTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFT-G 267

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            AR +F+DM +++  SW  +I+G   +GN    L V  EM LEG++MN  +    +  C 
Sbjct: 268 IARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCP 327

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
             G +S   LIH  VIKHG   +L V N++++MY +F  L DA + F +M   D+++WN+
Sbjct: 328 QLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNS 387

Query: 286 IIAGYEKSGSSECLN-MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           IIA YE++      +  F KM+   F P+  T  S+ +  A        + VH  I+RRG
Sbjct: 388 IIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRG 447

Query: 345 -LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
            L  ++ + NA++DMYAK G +  + K+F  +  +D+++W +++ GY  +G   EAIE++
Sbjct: 448 WLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVY 507

Query: 404 DEMVK-SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
             M +   + P++  ++++L A +H G + +G+K    +   N++ +  +  C++D+ G+
Sbjct: 508 KMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGK 567

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLG--ACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520
            GR+ +A  L   +P +     W  ++       H    L     +    +KP+ +    
Sbjct: 568 CGRLVDAMSLFYQVP-QESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVS 626

Query: 521 ILSNI----YAAEGKW 532
           +LS      +  EGKW
Sbjct: 627 LLSACSHSGFVEEGKW 642



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 118/424 (27%), Positives = 217/424 (51%), Gaps = 34/424 (8%)

Query: 131 AALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYA 190
           A  +H + +  G   SI++   L+++YA     +  +R  F+ +  K+  +W ++I+ Y 
Sbjct: 135 AKCLHALLVVAGKVQSIFISTRLVNLYANLG-DVSLSRCTFDQIPQKDVYAWNSMISAYV 193

Query: 191 HSGNGYGGLGVFKEMLLEGVEMNP--YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSN 248
           H+G+ +  +G F ++LL   E+ P  Y+F   ++AC   G +  G+ IH    K GF  N
Sbjct: 194 HNGHFHEAIGCFYQLLLVS-EIRPDFYTFPPVLKAC---GTLVDGRKIHCWAFKLGFQWN 249

Query: 249 LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKS 307
           + V  S++ MY RF     A   FD+M  +D+ +WN +I+G  ++G +++ L++  +M+ 
Sbjct: 250 VFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRL 309

Query: 308 ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISD 367
           E    N  T  SI+  C  L  +S    +H  +++ GL+ +L ++NALI+MYAK GN+ D
Sbjct: 310 EGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLED 369

Query: 368 SQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH 427
           ++K F +M   D+V+W S++  Y  +     A   F +M  +G +PD      +LT  S 
Sbjct: 370 ARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPD------LLTLVSL 423

Query: 428 AGLVDEG--LKYFKSMNDYNVN-----PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKP 480
           A +V +    K  +S++ + +       +  I   VVD+  + G +  A+++ + +P K 
Sbjct: 424 ASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVK- 482

Query: 481 DESVWGPLLGACKEHRLPNLGKLAALRVL-------DLKPNMMGTYIILSNIYAAEGKWE 533
           D   W  L+    ++ L +     A+ V        ++ PN  GT++ +   YA  G  +
Sbjct: 483 DVISWNTLITGYAQNGLAS----EAIEVYKMMEECKEIIPN-QGTWVSILPAYAHVGALQ 537

Query: 534 EFAK 537
           +  K
Sbjct: 538 QGMK 541



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 65/300 (21%), Positives = 154/300 (51%), Gaps = 9/300 (3%)

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
           F K +HA ++  G   ++ +   ++++Y     +S +   FD++ +KD+  WN++I+ Y 
Sbjct: 134 FAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYV 193

Query: 292 KSGS-SECLNMFSKMK-SERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
            +G   E +  F ++       P+ +TF  ++ AC TL     G+++H    + G   N+
Sbjct: 194 HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNV 250

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
            +A +LI MY++ G    ++ +F +M  RD+ +W +M+ G   +G+  +A+++ DEM   
Sbjct: 251 FVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLE 310

Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
           G++ + +  +++L  C   G +   +     +  + +  +  +   ++++  + G +++A
Sbjct: 311 GIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDA 370

Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNL--GKLAALRVLDLKPNMMGTYIILSNIYA 527
            +  + M F  D   W  ++ A +++  P    G    +++   +P+++ T + L++I A
Sbjct: 371 RKAFQQM-FITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLL-TLVSLASIVA 428


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/577 (33%), Positives = 330/577 (57%), Gaps = 11/577 (1%)

Query: 29  VKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYT 88
           V  S ++ D P+        A  L+  Y   G + +AR LFD MP+ D+V+W  MI+GY 
Sbjct: 274 VVSSGLEMDSPV--------ANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYV 325

Query: 89  SFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIY 148
                ++A  +F EM+   + P++ T SS L       +L     +H   I+ G+   ++
Sbjct: 326 QNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVF 385

Query: 149 VENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE 208
           ++++L+D+Y  C   ++ AR +F+     + V  T +I+GY  +G     L +F+ +L E
Sbjct: 386 LKSALIDIYFKC-RDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQE 444

Query: 209 GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDA 268
            +  N  + +  + ACA    ++ GK +H  ++K+G G +  V ++I+DMY +   L  A
Sbjct: 445 RMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLA 504

Query: 269 NQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATL 327
           +Q F  +++KD + WN++I    ++G   E +++F +M       +C + ++ ++ACA L
Sbjct: 505 HQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANL 564

Query: 328 AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMM 387
            AL  G+++HA ++R     +L   +ALIDMY+KCGN+  + ++F  M +++ V+W S++
Sbjct: 565 PALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSII 624

Query: 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNV 446
             YG HG  K+++ LF  M+  G++PD + F+A+++AC HAG VDEG+ YF+ M +   +
Sbjct: 625 AAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGI 684

Query: 447 NPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAAL 506
               E Y C+VDL GRAGR+ EA+ +I SMPF PD  VWG LLGAC+ H    L ++A+ 
Sbjct: 685 MARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAEVASR 744

Query: 507 RVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFI 566
            + DL P   G Y++LSN++A  G+WE   K R +M+  G +K  G SWI+V +    F+
Sbjct: 745 NLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQKVPGCSWIDVNNTTHMFV 804

Query: 567 ANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIH 603
           A D+    +  +Y +L+ L   + +  Y P +   +H
Sbjct: 805 AADRSHPQSSQIYLLLKNLFLELRKEGYVPQLYLPMH 841



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 137/450 (30%), Positives = 239/450 (53%), Gaps = 3/450 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + ++LIK Y + G I +AR LFD MP +D V W VM+ GY      + A  VF+EM R 
Sbjct: 183 FVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRT 242

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           E NPN+ T + VL  C     ++  + +HG+ +  GLE    V N+L+ +YA C    D 
Sbjct: 243 ETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFD- 301

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR +F+ M   + V+W  +I+GY  +G       +F EM+   ++ +  +FS  +   + 
Sbjct: 302 ARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSE 361

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  GK IH  +I++G   ++ + ++++D+Y +   +  A + FD+ T  D++    +
Sbjct: 362 GATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAM 421

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+GY  +G ++  L +F  +  ER   N  T  S++ ACA LAAL+ G+++H  I++ G 
Sbjct: 422 ISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGH 481

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
            G+  + +A++DMYAKCG +  + + F  +SD+D V W SM+     +G  +EAI+LF +
Sbjct: 482 GGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQ 541

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M  +G + D +   A L+AC++   +  G +    M       +      ++D+  + G 
Sbjct: 542 MGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGN 601

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           +  A  +  +M  K +E  W  ++ A   H
Sbjct: 602 LDLACRVFDTMEEK-NEVSWNSIIAAYGNH 630



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 131/454 (28%), Positives = 233/454 (51%), Gaps = 5/454 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           IL T L+  Y   G   +A+ +F ++       W  MI G+T     + A   + +M+  
Sbjct: 82  ILGTKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGC 141

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA-TCCISMD 165
              P+ +T   V+KAC G+ S++   +VH      G E  ++V +SL+  Y+   CI   
Sbjct: 142 GTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIH-- 199

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +AR +F+ M  K+ V W  ++ GY  +G+     GVF EM       N  +F+  +  CA
Sbjct: 200 DARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCA 259

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           S   ++FG  +H  V+  G   + PV N++L MY +   L DA + FD M + DL+TWN 
Sbjct: 260 SEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNG 319

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I+GY ++G   E   +F +M S R  P+  TF+S +   +  A L  G+++H  I+R G
Sbjct: 320 MISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNG 379

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           +  ++ L +ALID+Y KC ++  ++KIF + +  D+V  T+M+ GY  +G    A+E+F 
Sbjct: 380 VSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFR 439

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
            +++  +R + +   +VL AC+    +  G +    +       +  +   ++D+  + G
Sbjct: 440 WLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCG 499

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLP 498
           R+  A++    +  K D   W  ++ +C ++  P
Sbjct: 500 RLDLAHQTFIGISDK-DAVCWNSMITSCSQNGKP 532



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 96/321 (29%), Positives = 163/321 (50%), Gaps = 2/321 (0%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM 174
           L S+L+ C     LS     H   +  G+  +  +   L+ +Y  C   +D A+ +F  +
Sbjct: 49  LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLD-AKNIFYQL 107

Query: 175 KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGK 234
           +      W  +I G+   G     L  + +ML  G   + Y+F   ++AC     V+ G+
Sbjct: 108 RLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGR 167

Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG 294
           ++H  +   GF  ++ V +S++  Y    C+ DA   FD M  KD + WN ++ GY K+G
Sbjct: 168 VVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNG 227

Query: 295 S-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353
                  +F +M+    +PN  TF  +++ CA+   ++ G Q+H  +V  GL+ +  +AN
Sbjct: 228 DWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVAN 287

Query: 354 ALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP 413
            L+ MYAKCG++ D++++F  M   DLVTW  M+ GY  +G   EA  LF EM+ + ++P
Sbjct: 288 TLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKP 347

Query: 414 DRIVFMAVLTACSHAGLVDEG 434
           D I F + L   S    + +G
Sbjct: 348 DSITFSSFLPLLSEGATLRQG 368



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 126/270 (46%), Gaps = 2/270 (0%)

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           ++ C     +S G+  HA ++ +G G N  +   +L MY       DA   F ++     
Sbjct: 53  LQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWCS 112

Query: 281 ITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
             WN +I G+   G  +  L  + KM      P+ +TF  +I AC  L +++ G+ VH  
Sbjct: 113 EPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDK 172

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
           I   G + ++ + ++LI  Y++ G I D++ +F  M  +D V W  M+ GY  +G    A
Sbjct: 173 IQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNA 232

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL 459
             +F EM ++   P+ + F  VL+ C+   +++ G +    +    +  +  +   ++ +
Sbjct: 233 TGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAM 292

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
             + G + +A  L   MP K D   W  ++
Sbjct: 293 YAKCGHLFDARRLFDMMP-KTDLVTWNGMI 321


>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/562 (35%), Positives = 321/562 (57%), Gaps = 7/562 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S +A  L+  Y     ++ AR LFD +P+ D+VSW  +I+GY       +A  +F  M+ 
Sbjct: 194 SPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMIS 253

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             + P++ T +S L     + SL +   +HG  I+  +   ++++++L+D+Y  C   ++
Sbjct: 254 AGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKC-RDVE 312

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A+         + V  TT+I+GY  +G     L  F+ ++ E ++    +FS    A A
Sbjct: 313 MAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFA 372

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               ++ GK +H ++IK        V ++ILDMY +   L  A + F+ +TEKD I WN+
Sbjct: 373 GLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNS 432

Query: 286 IIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I    ++G   E +N+F +M  E    +C + +  ++ACA L AL  G+++H  +++  
Sbjct: 433 MITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGP 492

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           L  +L   ++LIDMYAKCGN++ S+++F  M +++ V+W S++  YG HG  KE + LF 
Sbjct: 493 LRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQEKNEVSWNSIISAYGNHGDLKECLALFH 552

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRA 463
           EM+++G++PD + F+ +++AC HAG VDEG++Y+  M  +Y +    E Y CV D+ GRA
Sbjct: 553 EMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRA 612

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           GR+ EA+E I SMPF PD  VWG LLGAC  H    L ++A+  + DL P   G Y++L+
Sbjct: 613 GRLHEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLA 672

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSH--TQYVYGV 581
           N+ A  GKW +  K R IM+  G +K  G SWIEV +    F+A D  GSH  T  +Y V
Sbjct: 673 NVQAGAGKWRKVLKVRSIMKERGVRKVPGYSWIEVNNATHMFVAAD--GSHPLTAQIYSV 730

Query: 582 LEMLIRHMNETAYEPDIDCLIH 603
           L+ L+  + +  Y P +   +H
Sbjct: 731 LDSLLLELKKEGYVPQLYLPMH 752



 Score =  215 bits (547), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 122/444 (27%), Positives = 229/444 (51%), Gaps = 3/444 (0%)

Query: 56  YFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTL 115
           Y   G +++A+ LF  +      +W  MI G+T     N A   +++M+   V+P+ +T 
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTF 61

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMK 175
             V+KAC G+KS+    +VH      GL+  ++V +SL+ +YA     + +A+ +F+++ 
Sbjct: 62  PYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENG-HLSDAQYLFDNIP 120

Query: 176 WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKL 235
            K+ V W  ++ GY  +G+    + +F EM    ++ N  +F+  +  CAS   +  G  
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG- 294
           +H   +  G   + PV N++L MY +  CL  A + FD + + DL++WN II+GY ++G 
Sbjct: 181 LHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGL 240

Query: 295 SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
             E  ++F  M S    P+  TF S +     L +L   +++H  I+R  +  ++ L +A
Sbjct: 241 MGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSA 300

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
           LID+Y KC ++  +QK   + S  D V  T+M+ GY  +G  KEA+E F  +V+  ++P 
Sbjct: 301 LIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPT 360

Query: 415 RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
            + F ++  A +    ++ G +   S+    ++    +   ++D+  + GR+  A  +  
Sbjct: 361 SVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFN 420

Query: 475 SMPFKPDESVWGPLLGACKEHRLP 498
            +  K D   W  ++ +C ++  P
Sbjct: 421 RITEK-DAICWNSMITSCSQNGRP 443



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 133/485 (27%), Positives = 244/485 (50%), Gaps = 7/485 (1%)

Query: 16  HKIPPIIKQ--SLQSVKKSSIQSDPPLIP--KGPSILATNLIKSYFDEGLIEEARTLFDE 71
           +  P ++K    L+SVK   I  +   +   K    + ++LIK Y + G + +A+ LFD 
Sbjct: 59  YTFPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDN 118

Query: 72  MPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNA 131
           +P++D V W VM+ GY        A  +F+EM  +E+ PN+ T + VL  C     L   
Sbjct: 119 IPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLG 178

Query: 132 ALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAH 191
             +HG+A+  GLE    V N+L+ +Y+  C  +  AR +F+ +   + VSW  +I+GY  
Sbjct: 179 TQLHGIAVGCGLELDSPVANTLLAMYSK-CQCLQAARKLFDTLPQSDLVSWNGIISGYVQ 237

Query: 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251
           +G       +F+ M+  G++ +  +F+  +        +   K IH  +I+H    ++ +
Sbjct: 238 NGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFL 297

Query: 252 MNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERF 310
            ++++D+Y +   +  A +   + +  D +   T+I+GY  +G + E L  F  +  ER 
Sbjct: 298 KSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERM 357

Query: 311 SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQK 370
            P   TF+SI  A A LAAL+ G+++H  I++  LD    + +A++DMYAKCG +  + +
Sbjct: 358 KPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACR 417

Query: 371 IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           +F+ ++++D + W SM+     +G   EAI LF +M   G R D +     L+AC++   
Sbjct: 418 VFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPA 477

Query: 431 VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490
           +  G +    M    +  +      ++D+  + G +  +  +   M  K +E  W  ++ 
Sbjct: 478 LHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQEK-NEVSWNSIIS 536

Query: 491 ACKEH 495
           A   H
Sbjct: 537 AYGNH 541



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 115/233 (49%), Gaps = 2/233 (0%)

Query: 258 MYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFT 316
           MY R   L DA   F  +       WN +I G+   G  +  L  + KM     SP+ +T
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           F  ++ AC  L ++  G+ VH  +   GL  ++ + ++LI +YA+ G++SD+Q +F  + 
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
            +D V W  M+ GY  +G    AI++F EM  S ++P+ + F  VL+ C+   ++D G +
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180

Query: 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
                    +  +  +   ++ +  +   ++ A +L  ++P + D   W  ++
Sbjct: 181 LHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLP-QSDLVSWNGII 232



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 4/191 (2%)

Query: 358 MYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIV 417
           MY + G++ D++ +F  +       W  M+ G+   G    A+  + +M+ +GV PD+  
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 418 FMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMP 477
           F  V+ AC     V  G    +++N   +  +  +   ++ L    G + +A  L  ++P
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 478 FKPDESVWGPLL-GACKEHRLPNLGKL-AALRVLDLKPNMMGTYIILSNIYAAEGKWEEF 535
            K D  +W  +L G  K     N  K+   +R  ++KPN + T+  + ++ A+E   +  
Sbjct: 121 QK-DSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSV-TFACVLSVCASEAMLDLG 178

Query: 536 AKFRKIMRGMG 546
            +   I  G G
Sbjct: 179 TQLHGIAVGCG 189


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/565 (35%), Positives = 327/565 (57%), Gaps = 31/565 (5%)

Query: 73  PERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAA 132
           P R   SW   +   T  N   +A + ++EM  +   P+ F   +VLKA  G++ L    
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 133 LVHGMAIKEGL-EGSIYVENSLMDVYATC------------CISM-------DNARLVFN 172
            +H  A+K G    S+ V N+L+++Y  C             ++M       D+++ +F 
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFE 172

Query: 173 DMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSF 232
               ++ VSW T+I+ ++ S      L  F+ M+LEGVE++  + +  + AC+    +  
Sbjct: 173 SFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDV 232

Query: 233 GKLIHAAVIKHG-FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
           GK IHA V+++     N  V ++++DMYC    +    + FD +  + +  WN +I+GY 
Sbjct: 233 GKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYA 292

Query: 292 KSGSSE-CLNMFSKM-KSERFSPNCFTFTSIIAACA-TLAALSCGQQVHAGIVRRGLDGN 348
           ++G  E  L +F +M K     PN  T  S++ AC  +LAA++ G+++HA  +R  L  +
Sbjct: 293 RNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASD 352

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           + + +AL+DMYAKCG ++ S+++F+EM +++++TW  +++  G HG G+EA+ELF  MV 
Sbjct: 353 ITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVA 412

Query: 409 SGVR-----PDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGR 462
              R     P+ + F+ V  ACSH+GL+ EGL  F  M +D+ V P  + Y CVVDLLGR
Sbjct: 413 EAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGR 472

Query: 463 AGRVKEAYELIKSMPFKPDE-SVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           AG+++EAYEL+ +MP + D+   W  LLGAC+ H+   LG++AA  +L L+PN+   Y++
Sbjct: 473 AGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVL 532

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGV 581
           LSNIY++ G W +  + RK MR MG KKE G SWIE RD+V  F+A D     ++ ++G 
Sbjct: 533 LSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGF 592

Query: 582 LEMLIRHMNETAYEPDIDCLIHDLE 606
           LE L   M +  Y PD  C++H+++
Sbjct: 593 LETLSEKMRKEGYVPDTSCVLHNVD 617



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 213/420 (50%), Gaps = 25/420 (5%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+  Y   G +++++ LF+   +RD+VSW  MI+ ++  +  ++A   F  MV   V  +
Sbjct: 154 LMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELD 213

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEG--LEGSIYVENSLMDVYATCCISMDNARL 169
             T++SVL AC  ++ L     +H   ++    +E S +V ++L+D+Y   C  +++ R 
Sbjct: 214 GVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENS-FVGSALVDMYCN-CRQVESGRR 271

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEML-LEGVEMNPYSFSIAVRACA-ST 227
           VF+ +  +    W  +I+GYA +G     L +F EM+ + G+  N  + +  + AC  S 
Sbjct: 272 VFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSL 331

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             ++ GK IHA  I++   S++ V ++++DMY +  CL+ + + F+EM  K++ITWN +I
Sbjct: 332 AAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLI 391

Query: 288 AGYEKSGS-SECLNMFSKMKSE-----RFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
                 G   E L +F  M +E        PN  TF ++ AAC+    +S G  +   + 
Sbjct: 392 MACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMK 451

Query: 342 R-RGLDGNLALANALIDMYAKCGNISDSQKIFSEM-SDRDLV-TWTSMMIGYGAHGHGKE 398
              G++        ++D+  + G + ++ ++ + M ++ D V  W+S++     H    +
Sbjct: 452 HDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIH----Q 507

Query: 399 AIELFDEMVKS--GVRPDRIVFMAVLTAC-SHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455
            +EL +   K+   + P+      +L+   S AGL ++ ++  K+M    V   K+  GC
Sbjct: 508 NVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGV---KKEPGC 564



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 126/255 (49%), Gaps = 13/255 (5%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S + + L+  Y +   +E  R +FD +  R +  W  MI+GY       +A  +F+EM++
Sbjct: 250 SFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIK 309

Query: 106 -NEVNPNAFTLSSVLKAC-KGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CI 162
              + PN  T++SV+ AC   + +++    +H  AI+  L   I V ++L+D+YA C C+
Sbjct: 310 VAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCL 369

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE---GVEMNP--YSF 217
           ++  +R VFN+M  KN ++W  LI      G G   L +FK M+ E   G E  P   +F
Sbjct: 370 NL--SRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTF 427

Query: 218 SIAVRACASTGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM- 275
                AC+ +G +S G  L +     HG          ++D+  R   L +A +  + M 
Sbjct: 428 ITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMP 487

Query: 276 TEKDLI-TWNTIIAG 289
            E D +  W++++  
Sbjct: 488 AEFDKVGAWSSLLGA 502


>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 710

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/551 (34%), Positives = 315/551 (57%), Gaps = 3/551 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + ++LI  Y   G + +AR +FD +PER+ VSW  +I+GY       +AW +F  M R 
Sbjct: 149 FVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFXLMRRE 208

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           E   + F  +SVL A      +     +H +A+K GL     V N+L+ +Y  C   +D+
Sbjct: 209 EGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCG-CLDD 267

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A   F     K+D++W+ +ITGYA +G+ +  L +F  M L G + + ++F   + AC+ 
Sbjct: 268 ALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSD 327

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G +  GK IH   +K G+   +  M +++DMY +   L DA + FD + E D++ W ++
Sbjct: 328 IGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSM 387

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+GY ++G +E  L ++ +M+ ER  P+  T  S++ AC++LAAL  G+Q+HA  ++ G 
Sbjct: 388 ISGYAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGF 447

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
              + + +AL  MYAKCG++ D   +F  M  RD++TW +M+ G   +G G +A+ELF+E
Sbjct: 448 SLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELFEE 507

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAG 464
           +     +PD + F+ VL+ACSH GLV+ G  YF+ M +++ + P  E Y C+VD+L RAG
Sbjct: 508 LRHGTTKPDYVTFVNVLSACSHMGLVERGKVYFRMMLDEFGIVPRVEHYACMVDILSRAG 567

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           ++ E  E I+S        +W  LLGAC+ +R   LG  A  ++++L       YI+LS+
Sbjct: 568 KLHETKEFIESATIDHGMCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYILLSS 627

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           IY A G+ ++  + R++M+  G  KE G SWIE++ +V  F+  D++      +   L  
Sbjct: 628 IYTALGRSDDVERVRRLMKLRGVNKEPGCSWIELKSQVHVFVVGDQIHPQIVKICSELRR 687

Query: 585 LIRHMNETAYE 595
           L  HM +  YE
Sbjct: 688 LRDHMKDECYE 698



 Score =  221 bits (564), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 143/487 (29%), Positives = 239/487 (49%), Gaps = 13/487 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWT--VFVEMVR 105
           L  +L+  Y   G I +A+ +F+ +  +DVVSW  +I GY+       ++   +F  M  
Sbjct: 47  LTNSLVNLYAKCGSIVKAKLVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRA 106

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS-M 164
               PN  T S V  A             H +AIK      ++V +SL+++Y  C I  M
Sbjct: 107 ENTLPNGHTFSGVFTAASSSPETFGGLQAHALAIKTSNFYDVFVGSSLINMY--CKIGCM 164

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
            +AR VF+ +  +N VSW T+I+GYA     +    +F  M  E    + + ++  + A 
Sbjct: 165 LDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSAL 224

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
                V +GK IH   +K+G  S   V N+++ MY +  CL DA + F+   +KD ITW+
Sbjct: 225 TVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWS 284

Query: 285 TIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +I GY ++G S E LN+F  M      P+ FTF  +I AC+ + AL  G+Q+H   ++ 
Sbjct: 285 AMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKA 344

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G +  +    AL+DMYAKCG++ D++K F  + + D+V WTSM+ GY  +G  + A+ L+
Sbjct: 345 GYECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLY 404

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
             M    + P  +   +VL ACS    +++G +       Y  +    I   +  +  + 
Sbjct: 405 CRMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKC 464

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEH--RLPNLGKLAALRVLDLKPNMMGTYII 521
           G +++   + + MP + D   W  ++    ++   L  L     LR    KP+    Y+ 
Sbjct: 465 GSLEDGNLVFRRMPSR-DIMTWNAMISGLSQNGEGLKALELFEELRHGTTKPD----YVT 519

Query: 522 LSNIYAA 528
             N+ +A
Sbjct: 520 FVNVLSA 526



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 123/388 (31%), Positives = 207/388 (53%), Gaps = 15/388 (3%)

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P   +   +L  C   K L     +H   ++ G   S+Y+ NSL+++YA C  S+  A+L
Sbjct: 8   PQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCG-SIVKAKL 66

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGN-GYGG-LGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           VF  +  K+ VSW  LI GY+  G  GY   + +F+ M  E    N ++FS  V   AS+
Sbjct: 67  VFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFS-GVFTAASS 125

Query: 228 GWVSFGKL-IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +FG L  HA  IK     ++ V +S+++MYC+  C+ DA + FD + E++ ++W TI
Sbjct: 126 SPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATI 185

Query: 287 IAGYE-KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+GY  +  + E   +F  M+ E  + + F +TS+++A      +  G+Q+H   ++ GL
Sbjct: 186 ISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGL 245

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
               ++ NAL+ MY KCG + D+ K F    D+D +TW++M+ GY   G   EA+ LF  
Sbjct: 246 LSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYN 305

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE--IY--GCVVDLLG 461
           M  +G +P    F+ V+ ACS  G ++EG    K ++ Y++    E  IY    +VD+  
Sbjct: 306 MHLNGNKPSEFTFVGVINACSDIGALEEG----KQIHGYSLKAGYECQIYFMTALVDMYA 361

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLL 489
           + G + +A +    +  +PD  +W  ++
Sbjct: 362 KCGSLVDARKGFDYLK-EPDIVLWTSMI 388



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 94/192 (48%), Gaps = 11/192 (5%)

Query: 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKI 371
           P   +F  ++  C     L  G+ +HA ++R G   ++ L N+L+++YAKCG+I  ++ +
Sbjct: 8   PQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLV 67

Query: 372 FSEMSDRDLVTWTSMMIGYGAHGHGKEA--IELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
           F  ++++D+V+W  ++ GY   G    +  +ELF  M      P+   F  V TA S + 
Sbjct: 68  FESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSP 127

Query: 430 LVDEGLK----YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVW 485
               GL+      K+ N Y+V     +    +++  + G + +A ++  ++P +   S W
Sbjct: 128 ETFGGLQAHALAIKTSNFYDVFVGSSL----INMYCKIGCMLDARKVFDTIPERNTVS-W 182

Query: 486 GPLLGACKEHRL 497
             ++      R+
Sbjct: 183 ATIISGYAMERM 194


>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
          Length = 1012

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/565 (33%), Positives = 325/565 (57%), Gaps = 3/565 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + + + LI +Y    L+ +A  +F+ +  +D V WT M++ Y+  +C   A+ VF +M  
Sbjct: 197 AFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRV 256

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           +   PN F L+SVLKA   + S+     +HG AIK   +   +V  +L+D+YA C   + 
Sbjct: 257 SGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCG-DIK 315

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +ARL F  + + + +  + +I+ YA S        +F  ++   V  N YS S  ++AC 
Sbjct: 316 DARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACT 375

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           +   + FGK IH   IK G  S+L V N+++D Y + + +  + + F  + + + ++WNT
Sbjct: 376 NMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNT 435

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           I+ G+ +SG   E L++F +M++ +      T++S++ ACA+ A++    Q+H  I +  
Sbjct: 436 IVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKST 495

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
            + +  + N+LID YAKCG I D+ K+F  + +RD+++W +++ GY  HG   +A+ELFD
Sbjct: 496 FNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFD 555

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRA 463
            M KS V  + I F+A+L+ CS  GLV+ GL  F SM  D+ + P+ E Y C+V LLGRA
Sbjct: 556 RMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRA 615

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           GR+ +A + I  +P  P   VW  LL +C  H+   LG+ +A ++L+++P    TY++LS
Sbjct: 616 GRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLS 675

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           N+YAA G  ++ A  RK MR +G +K  G+SW+E++ ++  F          + +  +LE
Sbjct: 676 NMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLE 735

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGE 608
            L    +   Y PDI+ ++HD++ E
Sbjct: 736 WLNLKTSREGYIPDINVVLHDVDKE 760



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 121/448 (27%), Positives = 224/448 (50%), Gaps = 3/448 (0%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108
           A  L+  Y   G +  AR LFD MPER++VS+  ++  +        A  +F  +     
Sbjct: 99  ANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGH 158

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
             N F L+++LK    M +   A  VH  A K G + + +V + L+D Y+ C +  D A 
Sbjct: 159 EVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSD-AE 217

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            VFN +  K+ V WT +++ Y+ +        VF +M + G + NP++ +  ++A     
Sbjct: 218 HVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLP 277

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            V  GK IH   IK    +   V  ++LDMY +   + DA   F+ +   D+I  + +I+
Sbjct: 278 SVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMIS 337

Query: 289 GYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
            Y +S  +E    +F ++      PN ++ +S++ AC  +  L  G+Q+H   ++ G + 
Sbjct: 338 RYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHES 397

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           +L + NAL+D YAKC ++  S KIFS + D + V+W ++++G+   G G+EA+ +F EM 
Sbjct: 398 DLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQ 457

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
            + +   ++ + +VL AC+    +    +   S+     N +  I   ++D   + G ++
Sbjct: 458 AAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIR 517

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEH 495
           +A ++ + +  + D   W  ++     H
Sbjct: 518 DALKVFQHL-MERDIISWNAIISGYALH 544



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 158/327 (48%), Gaps = 4/327 (1%)

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEG--SIYVENSLMDVYATCCISMDNAR 168
           ++F  +  L+ C           VHG  ++ G  G   ++  N L+++Y      + +AR
Sbjct: 58  DSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLG-PLASAR 116

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            +F+ M  +N VS+ TL+  +A  G+      +F+ +  EG E+N +  +  ++   +  
Sbjct: 117 RLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMD 176

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
                  +H+   K G   N  V + ++D Y     +SDA   F+ +  KD + W  +++
Sbjct: 177 AAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVS 236

Query: 289 GYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
            Y ++   E    +FSKM+     PN F  TS++ A   L ++  G+ +H   ++   D 
Sbjct: 237 CYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDT 296

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
              +  AL+DMYAKCG+I D++  F  +   D++  + M+  Y      ++A ELF  ++
Sbjct: 297 EPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLM 356

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEG 434
           +S V P+     +VL AC++   +D G
Sbjct: 357 RSSVLPNEYSLSSVLQACTNMVQLDFG 383



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 138/272 (50%), Gaps = 13/272 (4%)

Query: 216 SFSIA--VRACASTGWVSFGKLIHAAVIKHGFGSNLPVM--NSILDMYCRFDCLSDANQY 271
           SF+ A  ++ C + G    G+ +H  V++ G    L +   N +L+MY +   L+ A + 
Sbjct: 59  SFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRL 118

Query: 272 FDEMTEKDLITWNTIIAGYEKSGSSECLN-MFSKMKSERFSPNCFTFTSIIAACATLAAL 330
           FD M E++++++ T++  + + G  E    +F +++ E    N F  T+++     + A 
Sbjct: 119 FDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAA 178

Query: 331 SCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY 390
                VH+   + G D N  + + LID Y+ C  +SD++ +F+ +  +D V WT+M+  Y
Sbjct: 179 GLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCY 238

Query: 391 GAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTA--CSHAGLVDEGLK--YFKSMNDYNV 446
             +   + A  +F +M  SG +P+     +VL A  C  + ++ +G+     K++ND   
Sbjct: 239 SENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLND--- 295

Query: 447 NPNKEIYGCVVDLLGRAGRVKEAYELIKSMPF 478
                + G ++D+  + G +K+A    + +P+
Sbjct: 296 -TEPHVGGALLDMYAKCGDIKDARLAFEMIPY 326


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/503 (36%), Positives = 298/503 (59%), Gaps = 7/503 (1%)

Query: 101 VEMVRNEVNPNAFT---LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVY 157
           +E++R +   NA       ++LK C  +  L+   ++H + +       + ++N+L+++Y
Sbjct: 1   MELIRQQCKNNAGAREICHTLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLY 60

Query: 158 ATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSF 217
           A C   +  AR +F++M  ++ V+WT LITGY+        L +  EML  G++ N ++ 
Sbjct: 61  AKCG-DLVYARKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTL 119

Query: 218 SIAVRACASTGWVSF--GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM 275
           +  ++A +  G      G+ +H   +++G+ SN+ V  +ILDMY R   L +A   FD M
Sbjct: 120 ASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVM 179

Query: 276 TEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334
             K+ ++WN +IAGY + G  +    +FS M  E   P  FT++S++ ACA++ +L  G+
Sbjct: 180 VSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGK 239

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
            VHA +++ G      + N L+DMYAK G+I D++K+F  ++ RD+V+W SM+ GY  HG
Sbjct: 240 WVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHG 299

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG 454
            GK A++ F+EM+++ + P+ I F+ VLTACSHAGL+DEG  YF  M  YNV P    Y 
Sbjct: 300 LGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKKYNVEPQISHYV 359

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514
            +VDLLGRAG +  A + I  MP KP  +VWG LLGAC+ H+   LG  AA  + +L  +
Sbjct: 360 TMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSH 419

Query: 515 MMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSH 574
             GT+++L NIYA  G+W + AK RK+M+  G KKE   SW+E+ ++V  F+A+D     
Sbjct: 420 YPGTHVLLYNIYALAGRWNDAAKVRKMMKESGVKKEPACSWVEMENEVHVFVADDDAHPQ 479

Query: 575 TQYVYGVLEMLIRHMNETAYEPD 597
            + ++ + E +   + E  Y PD
Sbjct: 480 RREIHNMWEQISDKIKEIGYVPD 502



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 110/332 (33%), Positives = 186/332 (56%), Gaps = 4/332 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++   L+  Y   G +  AR LFDEM  RDVV+WT +I GY+  +    A  +  EM+R 
Sbjct: 51  VMQNTLLNLYAKCGDLVYARKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRI 110

Query: 107 EVNPNAFTLSSVLKACKGMKSLS--NAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
            + PN FTL+S+LKA  G+ S        +HG+ ++ G + ++YV  +++D+YA  C  +
Sbjct: 111 GLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYAR-CHHL 169

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           + A+L+F+ M  KN+VSW  LI GYA  G G     +F  ML E V+   +++S  + AC
Sbjct: 170 EEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCAC 229

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           AS G +  GK +HA +IK G      V N++LDMY +   + DA + FD + ++D+++WN
Sbjct: 230 ASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWN 289

Query: 285 TIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           +++ GY + G  +  L  F +M   R +PN  TF  ++ AC+    L  G+     + + 
Sbjct: 290 SMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKKY 349

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEM 375
            ++  ++    ++D+  + G++  + +  SEM
Sbjct: 350 NVEPQISHYVTMVDLLGRAGHLDRAIQFISEM 381



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 117/217 (53%), Gaps = 1/217 (0%)

Query: 62  IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121
           +EEA+ +FD M  ++ VSW  +IAGY      ++A+ +F  M+R  V P  FT SSVL A
Sbjct: 169 LEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCA 228

Query: 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS 181
           C  M SL     VH + IK G +   +V N+L+D+YA    S+++A+ VF+ +  ++ VS
Sbjct: 229 CASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSG-SIEDAKKVFDRLAKRDVVS 287

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           W +++TGY+  G G   L  F+EML   +  N  +F   + AC+  G +  G+     + 
Sbjct: 288 WNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMK 347

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK 278
           K+     +    +++D+  R   L  A Q+  EM  K
Sbjct: 348 KYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIK 384



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 52/111 (46%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + +   L+  Y   G IE+A+ +FD + +RDVVSW  M+ GY+       A   F EM+R
Sbjct: 254 AFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLR 313

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDV 156
             + PN  T   VL AC     L        M  K  +E  I    +++D+
Sbjct: 314 TRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKKYNVEPQISHYVTMVDL 364


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/556 (36%), Positives = 315/556 (56%), Gaps = 25/556 (4%)

Query: 78  VSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGM 137
           ++W  +I  Y S      +   F  +    ++P+     S+L+A    K  + A  +H  
Sbjct: 42  LAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSLHAA 101

Query: 138 AIKEGLEGSIYVENSLMDVYATC---------------------CISMDNARLVFNDMKW 176
            I+ G    +Y  N+LM++Y+                        + +D+ R +F+ M  
Sbjct: 102 VIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMPV 161

Query: 177 KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLI 236
           ++ VSW T+I G A +G     L + KEM  E +  + ++ S  +        V+ GK I
Sbjct: 162 RDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGKEI 221

Query: 237 HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS- 295
           H   I+HGF  ++ + +S++DMY +   +  +   F  ++ +D I+WN+IIAG  ++G  
Sbjct: 222 HGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRF 281

Query: 296 SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
            + L  F +M  E+  P   +F+S+I ACA L AL+ G+Q+HA I+R G D N  +A++L
Sbjct: 282 DQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSL 341

Query: 356 IDMYAKCGNISDSQKIFS--EMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP 413
           +DMYAKCGNI  ++ IF+  EM DRD+V+WT++++G   HGH  +A+ LF+EM+  GV+P
Sbjct: 342 LDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKP 401

Query: 414 DRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
             + FMAVLTACSHAGLVDEG KYF SM  D+ V P  E Y  V DLLGRAGR++EAY+ 
Sbjct: 402 CYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDF 461

Query: 473 IKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKW 532
           I +M  +P  SVW  LL AC+ H+   L +    ++L + P  MG ++I+SNIY+A  +W
Sbjct: 462 ISNMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSAAQRW 521

Query: 533 EEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNET 592
            + AK R  MR  G KK    SWIEV +KV  F+A DK   +   +   L +L+  M + 
Sbjct: 522 RDAAKLRVRMRKTGLKKTPACSWIEVGNKVHTFLAGDKSHPYYDKINEALNILLEQMEKE 581

Query: 593 AYEPDIDCLIHDLEGE 608
            Y  D + ++HD++ E
Sbjct: 582 GYVLDTNEVLHDVDEE 597



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 184/351 (52%), Gaps = 10/351 (2%)

Query: 62  IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121
           I+  R LFD MP RDVVSW  +IAG      + +A  +  EM +  + P++FTLSS+L  
Sbjct: 149 IDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPI 208

Query: 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS 181
                +++    +HG AI+ G +  +++ +SL+D+YA  C  ++ +   F+ +  ++ +S
Sbjct: 209 FTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAK-CTQVELSVCAFHLLSNRDAIS 267

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           W ++I G   +G    GLG F+ ML E V+    SFS  + ACA    ++ GK +HA +I
Sbjct: 268 WNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYII 327

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFD--EMTEKDLITWNTIIAGYEKSGSS-EC 298
           + GF  N  + +S+LDMY +   +  A   F+  EM ++D+++W  II G    G + + 
Sbjct: 328 RLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDA 387

Query: 299 LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-GLDGNLALANALID 357
           +++F +M  +   P    F +++ AC+    +  G +    + R  G+   L    A+ D
Sbjct: 388 VSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVAD 447

Query: 358 MYAKCGNISDSQKIFSEMSDRDL-VTWTSMMIGYGAHGHGKEAIELFDEMV 407
           +  + G + ++    S M +      W++++    AH    + IEL +++V
Sbjct: 448 LLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACRAH----KNIELAEKVV 494



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 173/364 (47%), Gaps = 24/364 (6%)

Query: 156 VYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPY 215
           V  TC +   +A++V       + ++W  +I  YA  G     L  F  +   G+  + +
Sbjct: 18  VVPTCHVKQLHAQIVKTTKATPHSLAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRH 77

Query: 216 SFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC----------- 264
            F   +RA       +  + +HAAVI+ GF  +L   N++++MY +F             
Sbjct: 78  LFPSLLRASTLFKHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQA 137

Query: 265 -----------LSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSP 312
                      +    + FD M  +D+++WNT+IAG  ++G   E LNM  +M  E   P
Sbjct: 138 RHNHNNKYSVKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRP 197

Query: 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIF 372
           + FT +SI+      A ++ G+++H   +R G D ++ + ++LIDMYAKC  +  S   F
Sbjct: 198 DSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAF 257

Query: 373 SEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD 432
             +S+RD ++W S++ G   +G   + +  F  M+K  V+P ++ F +V+ AC+H   ++
Sbjct: 258 HLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALN 317

Query: 433 EGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPF-KPDESVWGPLLGA 491
            G +    +     + NK I   ++D+  + G +K A  +   +     D   W  ++  
Sbjct: 318 LGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMG 377

Query: 492 CKEH 495
           C  H
Sbjct: 378 CAMH 381



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 123/247 (49%), Gaps = 5/247 (2%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + ++LI  Y     +E +   F  +  RD +SW  +IAG       +Q    F  M++ 
Sbjct: 235 FIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKE 294

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           +V P   + SSV+ AC  + +L+    +H   I+ G + + ++ +SL+D+YA C  ++  
Sbjct: 295 KVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCG-NIKM 353

Query: 167 ARLVFNDMKW--KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           AR +FN ++   ++ VSWT +I G A  G+    + +F+EML++GV+    +F   + AC
Sbjct: 354 ARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTAC 413

Query: 225 ASTGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL-IT 282
           +  G V  G K  ++     G    L    ++ D+  R   L +A  +   M E+     
Sbjct: 414 SHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSV 473

Query: 283 WNTIIAG 289
           W+T++A 
Sbjct: 474 WSTLLAA 480


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/564 (34%), Positives = 319/564 (56%), Gaps = 7/564 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           ++ +LI  Y   G + +AR LFD+   + VV+W  MI+GY +     +A  +F  M  N 
Sbjct: 231 VSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNY 290

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V  +  + +SV+K C  +K L     +H   +K G      +  +LM  Y+ C   +D  
Sbjct: 291 VRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDAL 350

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           RL        N VSWT +I+G+  +      + +F EM  +GV  N +++S+ + A    
Sbjct: 351 RLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALP-- 408

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             V     +HA V+K  +  +  V  ++LD Y +   + +A + F  + +KD++ W+ ++
Sbjct: 409 --VISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAML 466

Query: 288 AGYEKSGSSEC-LNMFSKMKSERFSPNCFTFTSIIAACA-TLAALSCGQQVHAGIVRRGL 345
           AGY ++G +E  + MF ++      PN FTF+SI+  CA T A++  G+Q H   ++  L
Sbjct: 467 AGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRL 526

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           D +L +++AL+ MYAK GNI  ++++F    ++DLV+W SM+ GY  HG   +A+++F E
Sbjct: 527 DSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKE 586

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAG 464
           M K  V+ D + F+ V  AC+HAGLV+EG KYF  M  D  + P KE   C+VDL  RAG
Sbjct: 587 MKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAG 646

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           ++++A ++I++MP     ++W  +L AC+ H+   LG+LAA +++ +KP     Y++LSN
Sbjct: 647 QLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSN 706

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           +YA  G W+E AK RK+M     KKE G SWIEV++K   F+A D+       +Y  LE 
Sbjct: 707 MYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLED 766

Query: 585 LIRHMNETAYEPDIDCLIHDLEGE 608
           L   + +  YEPD   ++ D++ E
Sbjct: 767 LSTRLKDLGYEPDTSYVLQDIDDE 790



 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 124/451 (27%), Positives = 248/451 (54%), Gaps = 9/451 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + T+L+ +Y      ++ R +FDEM ER+VV+WT +I+GY   + +++  T+F+ M    
Sbjct: 130 VGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEG 189

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
             PN+FT ++ L              VH + +K GL+ +I V NSL+++Y  C  ++  A
Sbjct: 190 TQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCG-NVRKA 248

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R++F+  + K+ V+W ++I+GYA +G     LG+F  M L  V ++  SF+  ++ CA+ 
Sbjct: 249 RILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANL 308

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLITWNTI 286
             + F + +H +V+K+GF  +  +  +++  Y +   + DA + F E+    ++++W  +
Sbjct: 309 KELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAM 368

Query: 287 IAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+G+ +  G  E +++FS+MK +   PN FT++ I+ A   ++      +VHA +V+   
Sbjct: 369 ISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISP----SEVHAQVVKTNY 424

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           + +  +  AL+D Y K G + ++ K+FS + D+D+V W++M+ GY   G  + AI++F E
Sbjct: 425 ERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGE 484

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGL-VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
           + K G++P+   F ++L  C+     + +G ++        ++ +  +   ++ +  + G
Sbjct: 485 LTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKG 544

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            ++ A E+ K    K D   W  ++    +H
Sbjct: 545 NIESAEEVFKRQREK-DLVSWNSMISGYAQH 574



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 125/428 (29%), Positives = 217/428 (50%), Gaps = 8/428 (1%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           A  LFD+ P RD  S+  ++ G++      +A  +F+ + R  +  +    SSVLK    
Sbjct: 46  AHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSAT 105

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTT 184
           +        +H   IK G    + V  SL+D Y     +  + R VF++MK +N V+WTT
Sbjct: 106 LCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGS-NFKDGRKVFDEMKERNVVTWTT 164

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG 244
           LI+GYA +      L +F  M  EG + N ++F+ A+   A  G    G  +H  V+K+G
Sbjct: 165 LISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNG 224

Query: 245 FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFS 303
               +PV NS++++Y +   +  A   FD+   K ++TWN++I+GY  +G   E L MF 
Sbjct: 225 LDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFY 284

Query: 304 KMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG 363
            M+      +  +F S+I  CA L  L   +Q+H  +V+ G   +  +  AL+  Y+KC 
Sbjct: 285 SMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCT 344

Query: 364 NISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
            + D+ ++F E+    ++V+WT+M+ G+  +   +EA++LF EM + GVRP+   +  +L
Sbjct: 345 AMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVIL 404

Query: 423 TACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDE 482
           TA       +   +  K+    N   +  +   ++D   + G+V+EA ++   +  K D 
Sbjct: 405 TALPVISPSEVHAQVVKT----NYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDK-DI 459

Query: 483 SVWGPLLG 490
             W  +L 
Sbjct: 460 VAWSAMLA 467



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 84/263 (31%), Positives = 146/263 (55%), Gaps = 1/263 (0%)

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           NA  +F+    ++  S+ +L+ G++  G       +F  +   G+EM+   FS  ++  A
Sbjct: 45  NAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSA 104

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           +     FG+ +H   IK GF  ++ V  S++D Y +     D  + FDEM E++++TW T
Sbjct: 105 TLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTT 164

Query: 286 IIAGYEK-SGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I+GY + S + E L +F +M++E   PN FTF + +   A       G QVH  +V+ G
Sbjct: 165 LISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNG 224

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           LD  + ++N+LI++Y KCGN+  ++ +F +   + +VTW SM+ GY A+G   EA+ +F 
Sbjct: 225 LDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFY 284

Query: 405 EMVKSGVRPDRIVFMAVLTACSH 427
            M  + VR     F +V+  C++
Sbjct: 285 SMRLNYVRLSESSFASVIKLCAN 307



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 125/247 (50%), Gaps = 4/247 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S + T L+ +Y   G +EEA  +F  + ++D+V+W+ M+AGY        A  +F E+ +
Sbjct: 428 STVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTK 487

Query: 106 NEVNPNAFTLSSVLKACKGMK-SLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
             + PN FT SS+L  C     S+      HG AIK  L+ S+ V ++L+ +YA    ++
Sbjct: 488 GGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKG-NI 546

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           ++A  VF   + K+ VSW ++I+GYA  G     L VFKEM    V+M+  +F     AC
Sbjct: 547 ESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAAC 606

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNS-ILDMYCRFDCLSDANQYFDEMTEKDLIT- 282
              G V  G+     +++    +     NS ++D+Y R   L  A +  + M      T 
Sbjct: 607 THAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTI 666

Query: 283 WNTIIAG 289
           W TI+A 
Sbjct: 667 WRTILAA 673


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/562 (35%), Positives = 316/562 (56%), Gaps = 5/562 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            L  +L+  Y   G + +A  +F ++   DVV+W+ MI G        +A  +F  M R 
Sbjct: 87  FLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRK 146

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVY-ATCCISMD 165
              PN FTLSS++     M  L     +HG   K G E    V N L+ +Y  + C+   
Sbjct: 147 GARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDG 206

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           N   VF  M   + VSW  L++G+  S     G  +F +MLLEG + N ++F   +R+C+
Sbjct: 207 NK--VFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCS 264

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           S     FGK +HA +IK+    +  V  +++DMY +  CL DA   FD +  +D+ +W  
Sbjct: 265 SLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTV 324

Query: 286 IIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           II+GY ++  +E  +  F +M+ E   PN +T  S ++ C+ +A L  G+Q+HA  V+ G
Sbjct: 325 IISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAG 384

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
             G++ + +AL+D+Y KCG +  ++ IF  +  RD+V+W +++ GY  HG G++A+E F 
Sbjct: 385 HFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFR 444

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRA 463
            M+  G+ PD   F+ VL+ACS  GLV+EG K F SM+  Y +NP+ E Y C+VD+LGRA
Sbjct: 445 MMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRA 504

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G+  E    I+ M   P   +W  +LGACK H   + G+ AA ++ +++P M  +YI+LS
Sbjct: 505 GKFNEVKIFIEEMNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLS 564

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           NI+A++G+W++    R +M   G KKE G SW+EV  +V  F++ D      + +Y  L+
Sbjct: 565 NIFASKGRWDDVRNIRALMTSRGIKKEPGCSWVEVDGQVHVFLSQDGSHPKIREIYAKLD 624

Query: 584 MLIRHMNETAYEPDIDCLIHDL 605
            L + +    Y P  + ++H++
Sbjct: 625 KLGQSLMSIGYVPKTEVVLHNV 646



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 129/435 (29%), Positives = 225/435 (51%), Gaps = 3/435 (0%)

Query: 62  IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121
           +E A  LF  MPE++ VSW  ++ GY       +   +F +M   E   + FTLS+VLK 
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS 181
           C    SL    ++H +A++ G E   ++  SL+D+Y+ C    D A  VF  ++  + V+
Sbjct: 61  CANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYD-ALKVFTKIRNPDVVA 119

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           W+ +ITG    G+G     +F  M  +G   N ++ S  V    + G + +G+ IH  + 
Sbjct: 120 WSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCIC 179

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG-YEKSGSSECLN 300
           K+GF S+  V N ++ MY +  C+ D N+ F+ MT  DL++WN +++G Y+         
Sbjct: 180 KYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPR 239

Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360
           +F +M  E F PN FTF S++ +C++L     G+QVHA I++   D +  +  AL+DMYA
Sbjct: 240 IFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYA 299

Query: 361 KCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420
           K   + D+   F  + +RD+ +WT ++ GY      ++A++ F +M + G++P+     +
Sbjct: 300 KARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLAS 359

Query: 421 VLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKP 480
            L+ CSH   ++ G +            +  +   +VDL G+ G ++ A  + K +    
Sbjct: 360 CLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGL-ISR 418

Query: 481 DESVWGPLLGACKEH 495
           D   W  ++    +H
Sbjct: 419 DIVSWNTIISGYSQH 433



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 186/367 (50%), Gaps = 7/367 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           ++++  LI  Y     +E+   +F+ M   D+VSW  +++G+       +   +F +M+ 
Sbjct: 187 NLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLL 246

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
               PN FT  SVL++C  +        VH   IK   +   +V  +L+D+YA     ++
Sbjct: 247 EGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAK-ARCLE 305

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +A + F+ +  ++  SWT +I+GYA +      +  F++M  EG++ N Y+ +  +  C+
Sbjct: 306 DAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCS 365

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               +  G+ +HA  +K G   ++ V ++++D+Y +  C+  A   F  +  +D+++WNT
Sbjct: 366 HMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNT 425

Query: 286 IIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR-R 343
           II+GY + G  E  L  F  M SE   P+  TF  +++AC+ +  +  G++    + +  
Sbjct: 426 IISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIY 485

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDL-VTWTSMMIGYGAHGH---GKEA 399
           G++ ++     ++D+  + G  ++ +    EM+     + W +++     HG+   G++A
Sbjct: 486 GINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVLGACKLHGNVDFGEKA 545

Query: 400 IELFDEM 406
            +   EM
Sbjct: 546 AKKLFEM 552



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 135/256 (52%), Gaps = 5/256 (1%)

Query: 268 ANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACAT 326
           A + F  M EK+ ++WN ++ GY + G   + L +F KMK      + FT ++++  CA 
Sbjct: 4   AERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCAN 63

Query: 327 LAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSM 386
             +L  G+ +HA  +R G + +  L  +L+DMY+KCG + D+ K+F+++ + D+V W++M
Sbjct: 64  TGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAM 123

Query: 387 MIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV 446
           + G    GHG+EA ELF  M + G RP++    ++++  ++ G +  G      +  Y  
Sbjct: 124 ITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGF 183

Query: 447 NPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAAL 506
             +  +   ++ +  ++  V++  ++ ++M   PD   W  LL    + +    G     
Sbjct: 184 ESDNLVSNPLIMMYMKSRCVEDGNKVFEAMT-NPDLVSWNALLSGFYDSQTCGRGPRIFY 242

Query: 507 RVL--DLKPNMMGTYI 520
           ++L    KPNM  T+I
Sbjct: 243 QMLLEGFKPNMF-TFI 257



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 39/82 (47%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   + + L+  Y   G +E A  +F  +  RD+VSW  +I+GY+      +A   F  M
Sbjct: 387 GDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMM 446

Query: 104 VRNEVNPNAFTLSSVLKACKGM 125
           +   + P+  T   VL AC  M
Sbjct: 447 LSEGIMPDEATFIGVLSACSFM 468


>gi|414881651|tpg|DAA58782.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 736

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/567 (34%), Positives = 324/567 (57%), Gaps = 13/567 (2%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            ++T L+  Y   G + +A+ +FD M  R+ VSW  M++GY +  C  +A+ +F  M++ 
Sbjct: 159 FVSTALLNMYCKLGAVSDAKRVFDGMLHRNAVSWAAMVSGYATGKCSEEAFELFRLMLQK 218

Query: 107 -EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISM 164
             +  N F  ++VL A      L     +HG+ +K+GL G + VENSL+ +YA   C  M
Sbjct: 219 CPLEKNEFVTTAVLSAVSVPLGLLMGTQLHGLVLKDGLVGFVSVENSLVTMYAKAEC--M 276

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           D A  VF   K +N ++W+ +ITGYA +G       +F +M   G     ++F   + AC
Sbjct: 277 DAAMRVFGSSKERNSITWSAMITGYAQNGEANCAARMFLQMHSSGFTPTEFTFVGVLNAC 336

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE-KDLITW 283
           +  G +  GK  H  ++K GF + + V ++++DMY +  C+ DA   F ++ +  D++ W
Sbjct: 337 SDMGALVVGKQTHCLMVKLGFETQVYVKSALVDMYAKCGCIGDAKDGFHQLYDVDDVVLW 396

Query: 284 NTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
             +I G+ ++G   E L ++S+M  +   P+  T TS++ ACA LAAL  G+Q+HA I++
Sbjct: 397 TAMITGHVQNGEHEEALMLYSRMDKQGIIPSYLTVTSVLRACACLAALDLGKQLHAQILK 456

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
                  ++  AL  MY+KCGN+ DS  +F  M DRD+++W S++  +  HG G +A+++
Sbjct: 457 CRFSLGGSVGTALSTMYSKCGNLEDSMVVFRRMPDRDVISWNSIISVFSQHGRGSDALDM 516

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLG 461
           F+EM   G  PD I F+ +L+ACSH GLVD G  YF++M  DYN+ P  + Y C+VD+L 
Sbjct: 517 FEEMKLEGTAPDHITFINLLSACSHMGLVDRGWFYFRAMTKDYNLIPTLDHYACMVDILS 576

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           RAG++KEA + I S+       +W  +LGAC+  R  ++G  A  ++++L       YI+
Sbjct: 577 RAGQLKEAKDFIDSITIDHGTCLWRIVLGACRSLRDFDVGAYAGEQLMELGTEDSSAYIL 636

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGV 581
           LSNIYAA+ KW +  + R +MR  G  K++G SW+E+ ++V  F+  ++     + +   
Sbjct: 637 LSNIYAAQRKWNDVERVRHLMRLRGVSKDLGCSWVELYNRVHVFVVGEQQHPEAENINVE 696

Query: 582 LEMLIRHMNETAYEPDIDCLIHDLEGE 608
           L  L +HM       D +C + D E +
Sbjct: 697 LIRLAKHMK------DEECFLFDDEKD 717



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 177/368 (48%), Gaps = 15/368 (4%)

Query: 134 VHGMAIKEGLEGSIYVENSLMDVYATCCIS---MDNARLVFNDM--KWKNDVSWTTLITG 188
           +HG A+K G      V NSL+  Y  C +    +  A +VF D+    ++  SW +L+  
Sbjct: 36  LHGWALKSGAASHAPVSNSLITFY--CSLPRPLLGAAYVVFADIPAALRDVASWNSLLNP 93

Query: 189 YAHSGNGYGGLGVFKEMLL--EGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIK--HG 244
            +   +    L  F+ M+   E V  +P+SF+ A  A A     S G + HA   K    
Sbjct: 94  LSRH-HPVSALSHFRSMMSSPEAVLPSPHSFAAAFTAAARVPSASAGAVTHALACKLPSS 152

Query: 245 FGS-NLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMF 302
            GS N+ V  ++L+MYC+   +SDA + FD M  ++ ++W  +++GY     S E   +F
Sbjct: 153 CGSNNVFVSTALLNMYCKLGAVSDAKRVFDGMLHRNAVSWAAMVSGYATGKCSEEAFELF 212

Query: 303 SKMKSE-RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK 361
             M  +     N F  T++++A +    L  G Q+H  +++ GL G +++ N+L+ MYAK
Sbjct: 213 RLMLQKCPLEKNEFVTTAVLSAVSVPLGLLMGTQLHGLVLKDGLVGFVSVENSLVTMYAK 272

Query: 362 CGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAV 421
              +  + ++F    +R+ +TW++M+ GY  +G    A  +F +M  SG  P    F+ V
Sbjct: 273 AECMDAAMRVFGSSKERNSITWSAMITGYAQNGEANCAARMFLQMHSSGFTPTEFTFVGV 332

Query: 422 LTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481
           L ACS  G +  G +    M          +   +VD+  + G + +A +    +    D
Sbjct: 333 LNACSDMGALVVGKQTHCLMVKLGFETQVYVKSALVDMYAKCGCIGDAKDGFHQLYDVDD 392

Query: 482 ESVWGPLL 489
             +W  ++
Sbjct: 393 VVLWTAMI 400



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 101/204 (49%), Gaps = 10/204 (4%)

Query: 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRFD--CLSDANQYFDEMTE--KDLITWNTIIA 288
           G+ +H   +K G  S+ PV NS++  YC      L  A   F ++    +D+ +WN+++ 
Sbjct: 33  GEALHGWALKSGAASHAPVSNSLITFYCSLPRPLLGAAYVVFADIPAALRDVASWNSLLN 92

Query: 289 GYEKSGSSECLNMFSKMKS--ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
              +      L+ F  M S  E   P+  +F +   A A + + S G   HA   +    
Sbjct: 93  PLSRHHPVSALSHFRSMMSSPEAVLPSPHSFAAAFTAAARVPSASAGAVTHALACKLPSS 152

Query: 347 ---GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
               N+ ++ AL++MY K G +SD++++F  M  R+ V+W +M+ GY      +EA ELF
Sbjct: 153 CGSNNVFVSTALLNMYCKLGAVSDAKRVFDGMLHRNAVSWAAMVSGYATGKCSEEAFELF 212

Query: 404 DEMV-KSGVRPDRIVFMAVLTACS 426
             M+ K  +  +  V  AVL+A S
Sbjct: 213 RLMLQKCPLEKNEFVTTAVLSAVS 236


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/569 (34%), Positives = 320/569 (56%), Gaps = 5/569 (0%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   +   LI  Y + G +  AR LFD++  +DVVSW+ MI  Y      ++A  +  +M
Sbjct: 157 GDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDM 216

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVE--NSLMDVYATCC 161
               V P+   + S+      +  L     +H   ++ G  G   V    +L+D+Y  C 
Sbjct: 217 HVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKC- 275

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
            ++  AR VF+ +   + +SWT +I  Y H  N   G+ +F +ML EG+  N  +    V
Sbjct: 276 ENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLV 335

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
           + C + G +  GKL+HA  +++GF  +L +  + +DMY +   +  A   FD    KDL+
Sbjct: 336 KECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLM 395

Query: 282 TWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
            W+ +I+ Y ++    E  ++F  M      PN  T  S++  CA   +L  G+ +H+ I
Sbjct: 396 MWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYI 455

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
            ++G+ G++ L  + +DMYA CG+I  + ++F+E +DRD+  W +M+ G+  HGHG+ A+
Sbjct: 456 DKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAAL 515

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDL 459
           ELF+EM   GV P+ I F+  L ACSH+GL+ EG + F  M +++   P  E YGC+VDL
Sbjct: 516 ELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDL 575

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
           LGRAG + EA+ELIKSMP +P+ +V+G  L ACK H+   LG+ AA + L L+P+  G  
Sbjct: 576 LGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKLGEWAAKQFLSLEPHKSGYN 635

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVY 579
           +++SNIYA+  +W + A  R+ M+  G  KE G+S IEV   +  FI  D+     + VY
Sbjct: 636 VLMSNIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNGLLHEFIMGDREHPDAKKVY 695

Query: 580 GVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
            +++ +   + +  Y PD+ C++H+++ E
Sbjct: 696 EMIDEMREKLEDAGYTPDVSCVLHNIDKE 724



 Score =  197 bits (502), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 131/477 (27%), Positives = 234/477 (49%), Gaps = 9/477 (1%)

Query: 81  TVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIK 140
           + +I  Y   NC   A  ++  M   +   + F + SVLKAC  + S      VHG  +K
Sbjct: 93  SFLITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVK 152

Query: 141 EGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLG 200
            G  G ++V N+L+ +Y+    S+  ARL+F+ ++ K+ VSW+T+I  Y  SG     L 
Sbjct: 153 NGFHGDVFVCNALIMMYSEVG-SLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALD 211

Query: 201 VFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGF--GSNLPVMNSILDM 258
           + ++M +  V+ +           A    +  GK +HA V+++G    S +P+  +++DM
Sbjct: 212 LLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDM 271

Query: 259 YCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTF 317
           Y + + L+ A + FD +++  +I+W  +IA Y    + +E + +F KM  E   PN  T 
Sbjct: 272 YVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITM 331

Query: 318 TSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD 377
            S++  C T  AL  G+ +HA  +R G   +L LA A IDMY KCG++  ++ +F     
Sbjct: 332 LSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKS 391

Query: 378 RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY 437
           +DL+ W++M+  Y  +    EA ++F  M   G+RP+    +++L  C+ AG ++ G   
Sbjct: 392 KDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWI 451

Query: 438 FKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG--ACKEH 495
              ++   +  +  +    VD+    G +  A+ L      + D S+W  ++   A   H
Sbjct: 452 HSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDR-DISMWNAMISGFAMHGH 510

Query: 496 RLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAK-FRKIMRGMGSKKEV 551
               L     +  L + PN + T+I   +  +  G  +E  + F K++   G   +V
Sbjct: 511 GEAALELFEEMEALGVTPNDI-TFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKV 566



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 190/408 (46%), Gaps = 31/408 (7%)

Query: 89  SFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIY 148
           SF   NQ  +  ++  +++  PN   +   L       +L+    +HG  IK     S  
Sbjct: 22  SFQNTNQYHSPTLKFTQSQPKPNVPHIQQELHI-----NLNETQQLHGHFIKTSSNCSYR 76

Query: 149 VENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE 208
           V  + ++ Y++                  N    + LIT Y  +        ++  M   
Sbjct: 77  VPLAALESYSS------------------NAAIHSFLITSYIKNNCPADAAKIYAYMRGT 118

Query: 209 GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDA 268
             E++ +     ++AC        G+ +H  V+K+GF  ++ V N+++ MY     L+ A
Sbjct: 119 DTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALA 178

Query: 269 NQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATL 327
              FD++  KD+++W+T+I  Y++SG   E L++   M   R  P+     SI    A L
Sbjct: 179 RLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISITHVLAEL 238

Query: 328 AALSCGQQVHAGIVRRGLDGN--LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTS 385
           A L  G+ +HA ++R G  G   + L  ALIDMY KC N++ ++++F  +S   +++WT+
Sbjct: 239 ADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTA 298

Query: 386 MMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG--LKYFKSMND 443
           M+  Y    +  E + LF +M+  G+ P+ I  ++++  C  AG ++ G  L  F   N 
Sbjct: 299 MIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNG 358

Query: 444 YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
           + +  +  +    +D+ G+ G V+ A  +  S   K D  +W  ++ +
Sbjct: 359 FTL--SLVLATAFIDMYGKCGDVRSARSVFDSFKSK-DLMMWSAMISS 403



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 59/140 (42%), Gaps = 2/140 (1%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           KG  IL T+ +  Y + G I+ A  LF E  +RD+  W  MI+G+        A  +F E
Sbjct: 461 KGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEE 520

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAA-LVHGMAIKEGLEGSIYVENSLMDVYATCC 161
           M    V PN  T    L AC     L     L H M  + G    +     ++D+     
Sbjct: 521 MEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAG 580

Query: 162 ISMDNARLVFNDMKWKNDVS 181
           + +D A  +   M  + +++
Sbjct: 581 L-LDEAHELIKSMPMRPNIA 599


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/641 (32%), Positives = 341/641 (53%), Gaps = 47/641 (7%)

Query: 3   TKRLLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLI 62
           T  L+S   T  C  +  + +   Q++KK  + ++P L  +  +   T+      + G  
Sbjct: 39  THPLISLLET--CESMDQLQQVHCQAIKKG-LNANPVLQNRVMTFCCTH------EYGDF 89

Query: 63  EEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKAC 122
           + AR LFDE+PE ++  W  MI GY+  +      ++++EM+R  V P+ +T   + K  
Sbjct: 90  QYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGF 149

Query: 123 KGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSW 182
               +L     +HG  +K GL+ +++V  +L+ +Y  C   +D AR VF+     + ++W
Sbjct: 150 TRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCG-QLDTARGVFDVCPKADVITW 208

Query: 183 TTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIK 242
             +I+ Y   G       +F  M  + V     +  + + AC+    +  GK +H+ V  
Sbjct: 209 NMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKN 268

Query: 243 HGFGSNLPVMNSILDMYCRFDC---------------------------------LSDAN 269
               SNL + N+++DMY   DC                                 +  A 
Sbjct: 269 CKVESNLVLENAMIDMYA--DCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVAR 326

Query: 270 QYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLA 328
            YFD+M EKD ++W  +I GY +S    E L +F  M++    P+ FT  S++ ACA L 
Sbjct: 327 NYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLG 386

Query: 329 ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMI 388
           AL  G+ +   I R  +  +L + NALIDMY KCG++  ++ IF EMS RD  TWT+M++
Sbjct: 387 ALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIV 446

Query: 389 GYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVN 447
           G   +GHG++A+++F  M+K+ + PD I ++ VL+AC+H GLVD+G KYF  M + + + 
Sbjct: 447 GLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIE 506

Query: 448 PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALR 507
           PN   YGC+VDLL RAGR+KEAYE+I++MP K +  VWG LL  C+ +R  ++ ++   +
Sbjct: 507 PNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQ 566

Query: 508 VLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIA 567
           +L+L+P+    Y++L NIYAA  +W +  + R++M   G KK  G S IE+  +V  F+A
Sbjct: 567 ILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVHEFVA 626

Query: 568 NDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
            D+    T+ +   L+ + + +    Y PDI  +  D+  E
Sbjct: 627 GDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEE 667



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 121/418 (28%), Positives = 204/418 (48%), Gaps = 45/418 (10%)

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI----SM 164
           +P    L S+L+ C+ M  L     VH  AIK+GL  +  ++N +M     CC       
Sbjct: 36  SPPTHPLISLLETCESMDQLQQ---VHCQAIKKGLNANPVLQNRVM---TFCCTHEYGDF 89

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
             AR +F+++   N   W T+I GY+       G+ ++ EML  GV+ + Y+F    +  
Sbjct: 90  QYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGF 149

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
                + +G+ +H  V+KHG   N+ V  +++ MY     L  A   FD   + D+ITWN
Sbjct: 150 TRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWN 209

Query: 285 TIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            II+ Y K G   E   +F  M+ ++  P   T   +++AC+ L  L  G++VH+ +   
Sbjct: 210 MIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNC 269

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDL----------------------- 380
            ++ NL L NA+IDMYA CG +  +  IF  M++RD+                       
Sbjct: 270 KVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYF 329

Query: 381 --------VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD 432
                   V+WT+M+ GY      KEA+ELF  M  + V+PD    ++VLTAC+H G ++
Sbjct: 330 DKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALE 389

Query: 433 EGLKYFKSMNDYN-VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
            G ++ ++  D N +  +  +   ++D+  + G V +A  + + M  + D+  W  ++
Sbjct: 390 LG-EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMS-QRDKFTWTAMI 445


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/641 (32%), Positives = 341/641 (53%), Gaps = 47/641 (7%)

Query: 3   TKRLLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLI 62
           T  L+S   T  C  +  + +   Q++KK  + ++P L  +  +   T+      + G  
Sbjct: 18  THPLISLLET--CESMDQLQQVHCQAIKKG-LNANPVLQNRVMTFCCTH------EYGDF 68

Query: 63  EEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKAC 122
           + AR LFDE+PE ++  W  MI GY+  +      ++++EM+R  V P+ +T   + K  
Sbjct: 69  QYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGF 128

Query: 123 KGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSW 182
               +L     +HG  +K GL+ +++V  +L+ +Y  C   +D AR VF+     + ++W
Sbjct: 129 TRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCG-QLDTARGVFDVCPKADVITW 187

Query: 183 TTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIK 242
             +I+ Y   G       +F  M  + V     +  + + AC+    +  GK +H+ V  
Sbjct: 188 NMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKN 247

Query: 243 HGFGSNLPVMNSILDMYCRFDC---------------------------------LSDAN 269
               SNL + N+++DMY   DC                                 +  A 
Sbjct: 248 CKVESNLVLENAMIDMYA--DCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVAR 305

Query: 270 QYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLA 328
            YFD+M EKD ++W  +I GY +S    E L +F  M++    P+ FT  S++ ACA L 
Sbjct: 306 NYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLG 365

Query: 329 ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMI 388
           AL  G+ +   I R  +  +L + NALIDMY KCG++  ++ IF EMS RD  TWT+M++
Sbjct: 366 ALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIV 425

Query: 389 GYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVN 447
           G   +GHG++A+++F  M+K+ + PD I ++ VL+AC+H GLVD+G KYF  M + + + 
Sbjct: 426 GLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIE 485

Query: 448 PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALR 507
           PN   YGC+VDLL RAGR+KEAYE+I++MP K +  VWG LL  C+ +R  ++ ++   +
Sbjct: 486 PNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQ 545

Query: 508 VLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIA 567
           +L+L+P+    Y++L NIYAA  +W +  + R++M   G KK  G S IE+  +V  F+A
Sbjct: 546 ILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFVA 605

Query: 568 NDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
            D+    T+ +   L+ + + +    Y PDI  +  D+  E
Sbjct: 606 GDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEE 646



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 121/418 (28%), Positives = 204/418 (48%), Gaps = 45/418 (10%)

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI----SM 164
           +P    L S+L+ C+ M  L     VH  AIK+GL  +  ++N +M     CC       
Sbjct: 15  SPPTHPLISLLETCESMDQLQQ---VHCQAIKKGLNANPVLQNRVM---TFCCTHEYGDF 68

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
             AR +F+++   N   W T+I GY+       G+ ++ EML  GV+ + Y+F    +  
Sbjct: 69  QYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGF 128

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
                + +G+ +H  V+KHG   N+ V  +++ MY     L  A   FD   + D+ITWN
Sbjct: 129 TRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWN 188

Query: 285 TIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            II+ Y K G   E   +F  M+ ++  P   T   +++AC+ L  L  G++VH+ +   
Sbjct: 189 MIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNC 248

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDL----------------------- 380
            ++ NL L NA+IDMYA CG +  +  IF  M++RD+                       
Sbjct: 249 KVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYF 308

Query: 381 --------VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD 432
                   V+WT+M+ GY      KEA+ELF  M  + V+PD    ++VLTAC+H G ++
Sbjct: 309 DKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALE 368

Query: 433 EGLKYFKSMNDYN-VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
            G ++ ++  D N +  +  +   ++D+  + G V +A  + + M  + D+  W  ++
Sbjct: 369 LG-EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMS-QRDKFTWTAMI 424


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/565 (33%), Positives = 325/565 (57%), Gaps = 3/565 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + + + LI +Y    L+ +A  +F+ +  +D V WT M++ Y+  +C   A+ VF +M  
Sbjct: 197 AFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRV 256

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           +   PN F L+SVLKA   + S+     +HG AIK   +   +V  +L+D+YA C   + 
Sbjct: 257 SGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCG-DIK 315

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +ARL F  + + + +  + +I+ YA S        +F  ++   V  N YS S  ++AC 
Sbjct: 316 DARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACT 375

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           +   + FGK IH   IK G  S+L V N+++D Y + + +  + + F  + + + ++WNT
Sbjct: 376 NMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNT 435

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           I+ G+ +SG   E L++F +M++ +      T++S++ ACA+ A++    Q+H  I +  
Sbjct: 436 IVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKST 495

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
            + +  + N+LID YAKCG I D+ K+F  + +RD+++W +++ GY  HG   +A+ELFD
Sbjct: 496 FNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFD 555

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRA 463
            M KS V  + I F+A+L+ CS  GLV+ GL  F SM  D+ + P+ E Y C+V LLGRA
Sbjct: 556 RMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRA 615

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           GR+ +A + I  +P  P   VW  LL +C  H+   LG+ +A ++L+++P    TY++LS
Sbjct: 616 GRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLS 675

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           N+YAA G  ++ A  RK MR +G +K  G+SW+E++ ++  F          + +  +LE
Sbjct: 676 NMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLE 735

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGE 608
            L    +   Y PDI+ ++HD++ E
Sbjct: 736 WLNLKTSREGYIPDINVVLHDVDKE 760



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 121/448 (27%), Positives = 224/448 (50%), Gaps = 3/448 (0%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108
           A  L+  Y   G +  AR LFD MPER++VS+  ++  +        A  +F  +     
Sbjct: 99  ANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGH 158

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
             N F L+++LK    M +   A  VH  A K G + + +V + L+D Y+ C +  D A 
Sbjct: 159 EVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSD-AE 217

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            VFN +  K+ V WT +++ Y+ +        VF +M + G + NP++ +  ++A     
Sbjct: 218 HVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLP 277

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            V  GK IH   IK    +   V  ++LDMY +   + DA   F+ +   D+I  + +I+
Sbjct: 278 SVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMIS 337

Query: 289 GYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
            Y +S  +E    +F ++      PN ++ +S++ AC  +  L  G+Q+H   ++ G + 
Sbjct: 338 RYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHES 397

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           +L + NAL+D YAKC ++  S KIFS + D + V+W ++++G+   G G+EA+ +F EM 
Sbjct: 398 DLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQ 457

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
            + +   ++ + +VL AC+    +    +   S+     N +  I   ++D   + G ++
Sbjct: 458 AAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIR 517

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEH 495
           +A ++ + +  + D   W  ++     H
Sbjct: 518 DALKVFQHL-MERDIISWNAIISGYALH 544



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 158/327 (48%), Gaps = 4/327 (1%)

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEG--SIYVENSLMDVYATCCISMDNAR 168
           ++F  +  L+ C           VHG  ++ G  G   ++  N L+++Y      + +AR
Sbjct: 58  DSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLG-PLASAR 116

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            +F+ M  +N VS+ TL+  +A  G+      +F+ +  EG E+N +  +  ++   +  
Sbjct: 117 RLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMD 176

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
                  +H+   K G   N  V + ++D Y     +SDA   F+ +  KD + W  +++
Sbjct: 177 AAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVS 236

Query: 289 GYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
            Y ++   E    +FSKM+     PN F  TS++ A   L ++  G+ +H   ++   D 
Sbjct: 237 CYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDT 296

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
              +  AL+DMYAKCG+I D++  F  +   D++  + M+  Y      ++A ELF  ++
Sbjct: 297 EPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLM 356

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEG 434
           +S V P+     +VL AC++   +D G
Sbjct: 357 RSSVLPNEYSLSSVLQACTNMVQLDFG 383



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 138/272 (50%), Gaps = 13/272 (4%)

Query: 216 SFSIA--VRACASTGWVSFGKLIHAAVIKHGFGSNLPVM--NSILDMYCRFDCLSDANQY 271
           SF+ A  ++ C + G    G+ +H  V++ G    L +   N +L+MY +   L+ A + 
Sbjct: 59  SFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRL 118

Query: 272 FDEMTEKDLITWNTIIAGYEKSGSSECLN-MFSKMKSERFSPNCFTFTSIIAACATLAAL 330
           FD M E++++++ T++  + + G  E    +F +++ E    N F  T+++     + A 
Sbjct: 119 FDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAA 178

Query: 331 SCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY 390
                VH+   + G D N  + + LID Y+ C  +SD++ +F+ +  +D V WT+M+  Y
Sbjct: 179 GLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCY 238

Query: 391 GAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTA--CSHAGLVDEGLK--YFKSMNDYNV 446
             +   + A  +F +M  SG +P+     +VL A  C  + ++ +G+     K++ND   
Sbjct: 239 SENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLND--- 295

Query: 447 NPNKEIYGCVVDLLGRAGRVKEAYELIKSMPF 478
                + G ++D+  + G +K+A    + +P+
Sbjct: 296 -TEPHVGGALLDMYAKCGDIKDARLAFEMIPY 326


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/509 (38%), Positives = 304/509 (59%), Gaps = 5/509 (0%)

Query: 95  QAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLM 154
           QA +++ +M+R+   PNAFT    LK+C  +      +  HG   K G     +V+  L+
Sbjct: 32  QALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLI 91

Query: 155 DVYATCCISMDNARLVF--NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEM 212
            +Y    + +DNAR VF  N    K  V +  L++GY  +      + +F++M  EGV +
Sbjct: 92  SMYCKGSL-VDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEAVLLFRQMNEEGVPV 150

Query: 213 NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYF 272
           N  +    + AC S   +  G  +H + +K+GF S++ V+N  + MY +   ++ A + F
Sbjct: 151 NSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLF 210

Query: 273 DEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALS 331
           DEM  K LI+WN +++GY ++G ++  L ++  M      P+  T   ++++CA L A S
Sbjct: 211 DEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQS 270

Query: 332 CGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG 391
            G +V   I   G   N  L NALI+MYA+CGN++ +Q +F  M +R LV+WT+++ GYG
Sbjct: 271 VGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYG 330

Query: 392 AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNK 450
            HGHG+ A++LF EM++SG+ PD   F+ VL+ACSHAGL D+GL+YFK M  +Y + P  
Sbjct: 331 MHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGP 390

Query: 451 EIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD 510
           E Y C+VDLLGRAGR+KEA  LI+SMP KPD +VWG LLGACK H+   L +LA  RV++
Sbjct: 391 EHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIE 450

Query: 511 LKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDK 570
           L+P  +G Y++LSNIY+     +   + R +M+    KK+ G S++E++ +V  FI  D+
Sbjct: 451 LEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDR 510

Query: 571 MGSHTQYVYGVLEMLIRHMNETAYEPDID 599
               +  +Y VLE L   + +   +P+ D
Sbjct: 511 NHLQSDEIYRVLEELEAIIMQEFGKPEKD 539



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 152/317 (47%), Gaps = 4/317 (1%)

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           W T +   A        L ++ +ML  G   N ++F  A+++CA+      G   H  + 
Sbjct: 17  WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 76

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE--MTEKDLITWNTIIAGY-EKSGSSEC 298
           K G      V   ++ MYC+   + +A + F+E   + K  + +N +++GY   S  SE 
Sbjct: 77  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEA 136

Query: 299 LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDM 358
           + +F +M  E    N  T   +I AC +   L  G  +H   ++ G D ++++ N  I M
Sbjct: 137 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITM 196

Query: 359 YAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVF 418
           Y KCG+++ +QK+F EM  + L++W +M+ GY  +G     +EL+  M  +GV PD +  
Sbjct: 197 YMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTL 256

Query: 419 MAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPF 478
           + VL++C++ G    G +    +       N  +   ++++  R G + +A  +   MP 
Sbjct: 257 VGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPE 316

Query: 479 KPDESVWGPLLGACKEH 495
           +   S W  ++G    H
Sbjct: 317 RTLVS-WTAIIGGYGMH 332



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 190/393 (48%), Gaps = 30/393 (7%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDE--MPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
            + T LI  Y    L++ AR +F+E     +  V +  +++GY S +  ++A  +F +M 
Sbjct: 85  FVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEAVLLFRQMN 144

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
              V  N+ TL  ++ AC    +L   + +H   +K G +  + V N  + +Y  C  S+
Sbjct: 145 EEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCG-SV 203

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           + A+ +F++M  K  +SW  +++GYA +G     L +++ M + GV  +P +    + +C
Sbjct: 204 NYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSC 263

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           A+ G  S G  +   +   GF SN  + N++++MY R   L+ A   FD M E+ L++W 
Sbjct: 264 ANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWT 323

Query: 285 TIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            II GY   G  E  + +F +M      P+   F  +++AC+           HAG+  +
Sbjct: 324 AIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACS-----------HAGLTDQ 372

Query: 344 GLD------GNLALA------NALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGY 390
           GL+       N  L       + ++D+  + G + ++Q +   M  + D   W +++   
Sbjct: 373 GLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGAC 432

Query: 391 GAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLT 423
             H + + A   F+ +++  + P+ I +  +L+
Sbjct: 433 KIHKNVELAELAFERVIE--LEPENIGYYVLLS 463


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/563 (35%), Positives = 320/563 (56%), Gaps = 4/563 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            +A +LI  Y   G    AR+LFD+MP RD+ SW  MI+G        QA  V  EM   
Sbjct: 251 FVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLE 310

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            +  N  T+ S+L  C  +  +S A L+H   IK GLE  ++V N+L+++YA    ++++
Sbjct: 311 GIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFG-NLED 369

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR  F  M   + VSW ++I  Y  + +     G F +M L G + +  +        A 
Sbjct: 370 ARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQ 429

Query: 227 TGWVSFGKLIHAAVIKHGF-GSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           +      + +H  +++ G+   ++ + N+++DMY +   L  A++ F+ +  KD+I+WNT
Sbjct: 430 SRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNT 489

Query: 286 IIAGYEKSG-SSECLNMFSKMKS-ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           +I GY ++G +SE + ++  M+  +   PN  T+ SI+ A A + AL  G ++H  +++ 
Sbjct: 490 LITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKT 549

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
            L  ++ +A  LID+Y KCG + D+  +F ++     VTW +++  +G HGH ++ ++LF
Sbjct: 550 NLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLF 609

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
            EM+  GV+PD + F+++L+ACSH+G V+EG   F+ M +Y + P+ + YGC+VDLLGRA
Sbjct: 610 GEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRA 669

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G ++ AY  IK MP +PD S+WG LLGAC+ H    LGK A+ R+ ++    +G Y++LS
Sbjct: 670 GYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLS 729

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           NIYA  GKWE   K R + R  G KK  G S IEV  KV  F   ++     + +Y  L 
Sbjct: 730 NIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELR 789

Query: 584 MLIRHMNETAYEPDIDCLIHDLE 606
           +L   M    Y PD   ++ D+E
Sbjct: 790 VLTAKMKSLGYIPDYSFVLQDVE 812



 Score =  243 bits (619), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 144/496 (29%), Positives = 263/496 (53%), Gaps = 15/496 (3%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR- 105
            ++T L+  Y + G +  +R  FD++P++DV +W  MI+ Y      ++A   F +++  
Sbjct: 152 FISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLV 211

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           +E+ P+ +T   VLKAC    +L +   +H  A K G + +++V  SL+ +Y+    +  
Sbjct: 212 SEIRPDFYTFPPVLKAC---GTLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFT-G 267

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            AR +F+DM +++  SW  +I+G   +GN    L V  EM LEG++MN  +    +  C 
Sbjct: 268 IARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCP 327

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
             G +S   LIH  VIKHG   +L V N++++MY +F  L DA + F +M   D+++WN+
Sbjct: 328 QLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNS 387

Query: 286 IIAGYEKSGSSECLN-MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           IIA YE++      +  F KM+   F P+  T  S+ +  A        + VH  I+RRG
Sbjct: 388 IIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRG 447

Query: 345 -LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
            L  ++ + NA++DMYAK G +  + K+F  +  +D+++W +++ GY  +G   EAIE++
Sbjct: 448 WLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVY 507

Query: 404 DEMVK-SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
             M +   + P++  ++++L A +H G + +G++    +   N++ +  +  C++D+ G+
Sbjct: 508 KMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGK 567

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLG--ACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520
            GR+ +A  L   +P +     W  ++       H    L     +    +KP+ +    
Sbjct: 568 CGRLVDAMSLFYQVP-QESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVS 626

Query: 521 ILSNI----YAAEGKW 532
           +LS      +  EGKW
Sbjct: 627 LLSACSHSGFVEEGKW 642



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 116/421 (27%), Positives = 215/421 (51%), Gaps = 34/421 (8%)

Query: 131 AALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYA 190
           A  +H + +  G   SI++   L+++YA     +  +R  F+ +  K+  +W ++I+ Y 
Sbjct: 135 AKCLHALLVVAGKVQSIFISTRLVNLYANLG-DVSLSRCTFDQIPQKDVYTWNSMISAYV 193

Query: 191 HSGNGYGGLGVFKEMLLEGVEMNP--YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSN 248
           H+G+ +  +G F ++LL   E+ P  Y+F   ++AC   G +  G+ IH    K GF  N
Sbjct: 194 HNGHFHEAIGCFYQLLLVS-EIRPDFYTFPPVLKAC---GTLVDGRRIHCWAFKLGFQWN 249

Query: 249 LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKS 307
           + V  S++ MY RF     A   FD+M  +D+ +WN +I+G  ++G +++ L++  +M+ 
Sbjct: 250 VFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRL 309

Query: 308 ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISD 367
           E    N  T  SI+  C  L  +S    +H  +++ GL+ +L ++NALI+MYAK GN+ D
Sbjct: 310 EGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLED 369

Query: 368 SQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH 427
           ++K F +M   D+V+W S++  Y  +     A   F +M  +G +PD      +LT  S 
Sbjct: 370 ARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPD------LLTLVSL 423

Query: 428 AGLVDEG--LKYFKSMNDYNVN-----PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKP 480
           A +V +    K  +S++ + +       +  I   VVD+  + G +  A+++ + +  K 
Sbjct: 424 ASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVK- 482

Query: 481 DESVWGPLLGACKEHRLPNLGKLAALRVL-------DLKPNMMGTYIILSNIYAAEGKWE 533
           D   W  L+    ++ L +     A+ V        ++ PN  GT++ +   YA  G  +
Sbjct: 483 DVISWNTLITGYAQNGLAS----EAIEVYKMMEECKEIIPN-QGTWVSILPAYAHVGALQ 537

Query: 534 E 534
           +
Sbjct: 538 Q 538



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 155/300 (51%), Gaps = 9/300 (3%)

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
           F K +HA ++  G   ++ +   ++++Y     +S +   FD++ +KD+ TWN++I+ Y 
Sbjct: 134 FAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYV 193

Query: 292 KSGS-SECLNMFSKMK-SERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
            +G   E +  F ++       P+ +TF  ++ AC TL     G+++H    + G   N+
Sbjct: 194 HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRRIHCWAFKLGFQWNV 250

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
            +A +LI MY++ G    ++ +F +M  RD+ +W +M+ G   +G+  +A+++ DEM   
Sbjct: 251 FVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLE 310

Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
           G++ + +  +++L  C   G +   +     +  + +  +  +   ++++  + G +++A
Sbjct: 311 GIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDA 370

Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNL--GKLAALRVLDLKPNMMGTYIILSNIYA 527
            +  + M F  D   W  ++ A +++  P    G    +++   +P+++ T + L++I A
Sbjct: 371 RKAFQQM-FITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLL-TLVSLASIVA 428


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/622 (33%), Positives = 340/622 (54%), Gaps = 67/622 (10%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPER---DVVSWTVMIAGY-------TSFNCHNQAWTVFV 101
           L+  Y   G +E+A  +FDE+  +   DV+SW  ++A +       T+ +  ++  T+  
Sbjct: 190 LVAMYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVH 249

Query: 102 EMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
           E   NE   +  ++ ++L AC  +K+L     +H  AI+ G     +V N+L+D YA C 
Sbjct: 250 EKATNE-RSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCG 308

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSG---------------------------- 193
            SM +A  VFN M++K+ VSW  ++TGY  SG                            
Sbjct: 309 -SMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVI 367

Query: 194 -----NGYG--GLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFG 246
                 GYG   L  F++M+L G E N  +    + ACAS G +S G   HA  +K    
Sbjct: 368 AGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLL 427

Query: 247 S------------NLPVMNSILDMYCRFDCLSDANQYFDEMT--EKDLITWNTIIAGYEK 292
           S            +L V N+++DMY +      A   F+ +   E++++TW  +I GY +
Sbjct: 428 SLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQ 487

Query: 293 SG-SSECLNMFSKMKSERFS--PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL--DG 347
            G S++ L +FS+M S+ ++  PN +T + I+ ACA L++L  G+Q+HA + R       
Sbjct: 488 YGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESS 547

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
              +AN LIDMY+KCG++  ++ +F  M  R+ V+WTSMM GYG HG GKEA+++FD+M 
Sbjct: 548 VYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQ 607

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRV 466
           K+G  PD I F+ +L ACSH+G+VD+GL YF  M +DY V  + + Y CV+DLL R+GR+
Sbjct: 608 KAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRL 667

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            +A++ I+ MP +P  ++W  LL AC+ H    L + A  +++ +K    G+Y ++SNIY
Sbjct: 668 DKAWKTIQEMPMEPSAAIWVALLSACRVHSNVELAEYALNKLVSMKAENDGSYTLISNIY 727

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           A   +W++ A+ R++M+  G KK  G SW++ +     F   D+    +  +Y +LE LI
Sbjct: 728 ATARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLI 787

Query: 587 RHMNETAYEPDIDCLIHDLEGE 608
             +    Y P+ +  +HD++ E
Sbjct: 788 GRIKVMGYVPETNFALHDVDDE 809



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 146/554 (26%), Positives = 254/554 (45%), Gaps = 83/554 (14%)

Query: 6   LLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEA 65
           LLSY A+     +PP+   S  S                P  L T ++ SY   G   +A
Sbjct: 59  LLSYPASLLSVSLPPLPSHSYVS----------------PKSLGTGVVASYLACGATSDA 102

Query: 66  RTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGM 125
            ++ + +     V W +++  +      ++A  V   M+R    P+ FTL   LKAC  +
Sbjct: 103 LSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPDHFTLPYALKACGEL 162

Query: 126 KSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK---NDVSW 182
            S  + +  HG+    G E +++V N+L+ +Y+    S+++A LVF+++  K   + +SW
Sbjct: 163 PSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSG-SLEDASLVFDEITRKGIDDVISW 221

Query: 183 TTLITGYAHSGNGYGGLGVFKEM--LLEGVEMNPYSFSIAV----RACASTGWVSFGKLI 236
            +++  +    N    L +F EM  ++     N  S  I++     ACAS   +   K I
Sbjct: 222 NSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEI 281

Query: 237 HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS- 295
           H+  I++G  ++  V N+++D Y +   + DA   F+ M  KD+++WN ++ GY +SG  
Sbjct: 282 HSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKF 341

Query: 296 -----------------------------------SECLNMFSKMKSERFSPNCFTFTSI 320
                                               E L+ F +M      PN  T  S+
Sbjct: 342 GAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISL 401

Query: 321 IAACATLAALSCGQQVHAGIVRRGL------------DGNLALANALIDMYAKCGNISDS 368
           ++ACA+L ALS G + HA  +++ L              +L + NALIDMY+KC +   +
Sbjct: 402 LSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAA 461

Query: 369 QKIFSEM--SDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS--GVRPDRIVFMAVLTA 424
           + IF+ +   +R++VTWT M+ GY  +G   +A++LF EM+     V P+      +L A
Sbjct: 462 RTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMA 521

Query: 425 CSHAGLVDEGLK---YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481
           C+H   +  G +   Y    ++Y  +    +  C++D+  + G V  A  +  SMP K +
Sbjct: 522 CAHLSSLRMGKQIHAYVTRHHEYE-SSVYFVANCLIDMYSKCGDVDTARNVFDSMP-KRN 579

Query: 482 ESVWGPLLGACKEH 495
           E  W  ++     H
Sbjct: 580 EVSWTSMMSGYGMH 593



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 41/75 (54%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A  LI  Y   G ++ AR +FD MP+R+ VSWT M++GY       +A  +F +M +  
Sbjct: 551 VANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAG 610

Query: 108 VNPNAFTLSSVLKAC 122
             P+  +   +L AC
Sbjct: 611 FVPDDISFLVLLYAC 625


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/584 (34%), Positives = 335/584 (57%), Gaps = 29/584 (4%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+  Y   G +++A++L     +RD+V+W  MI+ ++      +A      MV   V P+
Sbjct: 156 LMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPD 215

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIK--EGLEGSIYVENSLMDVYATCCISMDNARL 169
             T +SVL AC  +  L     +H  A++  + +E S +V ++L+D+Y  C   +++ RL
Sbjct: 216 GVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENS-FVGSALVDMYCNCG-QVESGRL 273

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEM-LLEGVEMNPYSFSIAVRACASTG 228
           VF+ +  +    W  +I GYA S +    L +F EM    G+  N  + S  V A     
Sbjct: 274 VFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCE 333

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            +S  + IH  VIK G  +N  + N+++DMY R   +  + + FD M ++D+++WNTII 
Sbjct: 334 GISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIIT 393

Query: 289 GYEKSG-SSECLNMFSKM----------------KSERFSPNCFTFTSIIAACATLAALS 331
            Y   G SS+ L +  +M                K   F PN  T  +++  CA+L+AL+
Sbjct: 394 SYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALA 453

Query: 332 CGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG 391
            G+++HA  +R  L   + + +AL+DMYAKCG ++ ++++F +M  R+++TW  +++ YG
Sbjct: 454 KGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAYG 513

Query: 392 AHGHGKEAIELFDEMVKSG-----VRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYN 445
            HG GKE++ELF++MV  G     V+P  + F+A+  +CSH+G+VDEGL  F  M N++ 
Sbjct: 514 MHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHG 573

Query: 446 VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDE-SVWGPLLGACKEHRLPNLGKLA 504
           + P  + Y C+VDL+GRAG+V+EAY L+ +MP   D+   W  LLGAC+ +    +G++A
Sbjct: 574 IEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIYHNIEIGEIA 633

Query: 505 ALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCG 564
           A  +L L+P++   Y++LSNIY++ G W++    R+ M+ MG KKE G SWIE  D+V  
Sbjct: 634 AENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIEYGDEVHK 693

Query: 565 FIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           F+A D     ++ ++  LE L   + +  Y PD  C++HD++ E
Sbjct: 694 FLAGDLSHPQSEKLHDFLETLSERLKKEGYVPDTACVLHDIDEE 737



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 122/455 (26%), Positives = 218/455 (47%), Gaps = 32/455 (7%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
            L+  Y   G + +A  +FD + ERD VSW  +I+    F     A   F  M+     P
Sbjct: 52  TLVNMYGKCGGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEP 111

Query: 111 NAFTLSSVLKACKGMKSLSNAAL---VHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           ++FTL S+  AC  ++      L   +HG   ++G     +  N+LM +YA     +D+A
Sbjct: 112 SSFTLVSMALACSNLRKRDGLWLGKQIHGCCFRKG-HWRTFSNNALMAMYAKLG-RLDDA 169

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           + +    + ++ V+W ++I+ ++ +      L   + M+LEGV+ +  +F+  + AC+  
Sbjct: 170 KSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHL 229

Query: 228 GWVSFGKLIHAAVIK-HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
             +  GK IHA  ++      N  V ++++DMYC    +      FD + ++ +  WN +
Sbjct: 230 DLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAM 289

Query: 287 IAGYEKSGSSE-CLNMFSKMKSER-FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           IAGY +S   E  L +F +M++      N  T +SI+ A      +S  + +H  +++RG
Sbjct: 290 IAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRG 349

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           L+ N  L NALIDMY++ G+I  S++IF  M DRD+V+W +++  Y   G   +A+ L  
Sbjct: 350 LETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLH 409

Query: 405 EMVK----------------SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN- 447
           EM +                   +P+ I  M VL  C+    + +G    K ++ Y +  
Sbjct: 410 EMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKG----KEIHAYAIRN 465

Query: 448 ---PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
                  +   +VD+  + G +  A  +   MP +
Sbjct: 466 LLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIR 500



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 120/438 (27%), Positives = 205/438 (46%), Gaps = 50/438 (11%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM-V 104
           S + + L+  Y + G +E  R +FD + +R +  W  MIAGY       +A  +F+EM  
Sbjct: 252 SFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEA 311

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
              +  NA T+SS++ A    + +S    +HG  IK GLE + Y++N+L+D+Y+     +
Sbjct: 312 AAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMG-DI 370

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLL--------------EGV 210
             ++ +F+ M+ ++ VSW T+IT Y   G     L +  EM                + V
Sbjct: 371 KTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQV 430

Query: 211 EMNPYSFSI--AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDA 268
              P S ++   +  CAS   ++ GK IHA  I++   S + V ++++DMY +  CL+ A
Sbjct: 431 PFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLA 490

Query: 269 NQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSE-----RFSPNCFTFTSIIA 322
            + FD+M  +++ITWN II  Y   G   E L +F  M +E        P   TF ++ A
Sbjct: 491 RRVFDQMPIRNVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFA 550

Query: 323 ACATLAALSCGQQVHAGIVRRGLDGNLALAN------------ALIDMYAKCGNISDSQK 370
           +C+           H+G+V  GL     + N             ++D+  + G + ++  
Sbjct: 551 SCS-----------HSGMVDEGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYG 599

Query: 371 IFSEM-SDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTAC-SHA 428
           + + M S  D V   S ++G     H  E  E+  E +   ++PD      +L+   S A
Sbjct: 600 LVNTMPSGFDKVGAWSSLLGACRIYHNIEIGEIAAENLLQ-LQPDVASHYVLLSNIYSSA 658

Query: 429 GLVDEGLKYFKSMNDYNV 446
           GL D+ +   + M    V
Sbjct: 659 GLWDKAMNLRRRMKAMGV 676



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 188/390 (48%), Gaps = 26/390 (6%)

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLE--GSIYVENSLMDVYATC 160
           M+ +  +P+ F   +VLKA  G++ L     +H    K G     S+ ++N+L+++Y  C
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKC 60

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
              + +A  VF+ +  ++ VSW ++I+           +  F+ ML+EG E  P SF++ 
Sbjct: 61  G-GLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFE--PSSFTLV 117

Query: 221 VRACASTG-------WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFD 273
             A A +        W+  GK IH    + G        N+++ MY +   L DA     
Sbjct: 118 SMALACSNLRKRDGLWL--GKQIHGCCFRKGHWRTFS-NNALMAMYAKLGRLDDAKSLLV 174

Query: 274 EMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSC 332
              ++DL+TWN++I+ + ++    E L     M  E   P+  TF S++ AC+ L  L  
Sbjct: 175 LFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRT 234

Query: 333 GQQVHAGIVRR-GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG 391
           G+++HA  +R   +  N  + +AL+DMY  CG +   + +F  + DR +  W +M+ GY 
Sbjct: 235 GKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYA 294

Query: 392 AHGHGKEAIELFDEM-VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDY----NV 446
              H ++A+ LF EM   +G+  +     +++ A        EG+   + ++ Y     +
Sbjct: 295 QSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRC----EGISRKEGIHGYVIKRGL 350

Query: 447 NPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
             N+ +   ++D+  R G +K +  +  SM
Sbjct: 351 ETNRYLQNALIDMYSRMGDIKTSKRIFDSM 380


>gi|449439011|ref|XP_004137281.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Cucumis sativus]
          Length = 787

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/488 (40%), Positives = 298/488 (61%), Gaps = 5/488 (1%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
           +L+  Y + G +  AR +F+ M +R VVSW  MI+G+       +A  VF  M+   V P
Sbjct: 224 SLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVFNSMMDARVEP 283

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           ++ T+ S L +C  +K L     VH +  K  L+  I V N+L+D+Y+ C   MD A LV
Sbjct: 284 DSATIVSALPSCGHLKELELGIKVHKLVQKNHLQEKIEVRNALVDMYSRCG-GMDEASLV 342

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F + K K+ ++WT++I GY  +GN    L +   M L+GV  N  + +  + ACAS   +
Sbjct: 343 FAETKEKDVITWTSMINGYIMNGNAKSALALCPAMQLDGVVPNAVTLASLLSACASLCCL 402

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
             GK +HA V++    S++ V+ +++DMY + + +S + Q F + + K  + WN +++G 
Sbjct: 403 KQGKSLHAWVMRKKLDSDVLVVTALIDMYAKCNAVSYSFQVFAKTSMKRTVPWNALLSGL 462

Query: 291 -EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
                + E + +F  M  E    N  TF S+I A A LA L     +H+ +VR G    +
Sbjct: 463 IHNELAREAVGLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNLHSYLVRSGFISKI 522

Query: 350 ALANALIDMYAKCGNISDSQKIFSEM--SDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           A+   LIDMY+KCG++  + KIF E+   ++D++ W+ ++ GYG HGHG+ A+ LF++MV
Sbjct: 523 AVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGETAVLLFNQMV 582

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRV 466
            SG++P+ I F +VL ACSH GLVD+GL  FK M  +Y  +P    Y CVVDLLGRAGR+
Sbjct: 583 HSGMQPNEITFTSVLHACSHRGLVDDGLTLFKYMIENYPSSPLPNHYTCVVDLLGRAGRL 642

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            EAY+LIKSMPF+ + S+WG LLGAC  H+   LG++AA R+ +L+P   G YI+L+NIY
Sbjct: 643 DEAYDLIKSMPFQQNHSIWGALLGACLIHQNVELGEVAAERLFELEPESTGNYILLANIY 702

Query: 527 AAEGKWEE 534
           AA G+W++
Sbjct: 703 AAVGRWKD 710



 Score =  219 bits (557), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 140/455 (30%), Positives = 237/455 (52%), Gaps = 12/455 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV-RN 106
           L ++L  SY   G +  AR LFD++ +  +  W  +I  Y     H  A  VF  M+   
Sbjct: 119 LPSHLAVSYAFCGCVPLARKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSG 178

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           +  P+ +T   V+KAC  M  L+   L+HG A+  G   +++V+NSL+ +Y  C   +  
Sbjct: 179 KCWPDKYTFPLVIKACSVMSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCG-KVGL 237

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR VFN M  ++ VSW T+I+G+  +G     L VF  M+   VE +  +   A+ +C  
Sbjct: 238 ARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGH 297

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  G  +H  V K+     + V N+++DMY R   + +A+  F E  EKD+ITW ++
Sbjct: 298 LKELELGIKVHKLVQKNHLQEKIEVRNALVDMYSRCGGMDEASLVFAETKEKDVITWTSM 357

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I GY  +G+++  L +   M+ +   PN  T  S+++ACA+L  L  G+ +HA ++R+ L
Sbjct: 358 INGYIMNGNAKSALALCPAMQLDGVVPNAVTLASLLSACASLCCLKQGKSLHAWVMRKKL 417

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           D ++ +  ALIDMYAKC  +S S ++F++ S +  V W +++ G   +   +EA+ LF  
Sbjct: 418 DSDVLVVTALIDMYAKCNAVSYSFQVFAKTSMKRTVPWNALLSGLIHNELAREAVGLFKS 477

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN----PNKEIYGCVVDLLG 461
           M+   V  +   F +V+ A  +A L D  LK   +++ Y V         +   ++D+  
Sbjct: 478 MLIEEVEANHATFNSVIPA--YAILAD--LKQVMNLHSYLVRSGFISKIAVITGLIDMYS 533

Query: 462 RAGRVKEAYELIKSMPFK-PDESVWGPLLGACKEH 495
           + G +  A+++   +P K  D  VW  L+     H
Sbjct: 534 KCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMH 568



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 110/393 (27%), Positives = 198/393 (50%), Gaps = 9/393 (2%)

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGS---IYVENSLMDVYATC-CISMDN 166
           N     S+L      +SL+   ++HG  I  GL  S   I++ + L   YA C C+ +  
Sbjct: 78  NVHRCDSLLCHYAATRSLNKTKILHGHTITSGLLHSPNFIHLPSHLAVSYAFCGCVPL-- 135

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG-VEMNPYSFSIAVRACA 225
           AR +F+D+   +   W  +I  Y   G  +  L VF  M+  G    + Y+F + ++AC+
Sbjct: 136 ARKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKCWPDKYTFPLVIKACS 195

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               ++ G LIH   +  GF SN+ V NS+L MY     +  A Q F+ M ++ +++WNT
Sbjct: 196 VMSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNT 255

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I+G+ ++G   E L +F+ M   R  P+  T  S + +C  L  L  G +VH  + +  
Sbjct: 256 MISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGHLKELELGIKVHKLVQKNH 315

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           L   + + NAL+DMY++CG + ++  +F+E  ++D++TWTSM+ GY  +G+ K A+ L  
Sbjct: 316 LQEKIEVRNALVDMYSRCGGMDEASLVFAETKEKDVITWTSMINGYIMNGNAKSALALCP 375

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
            M   GV P+ +   ++L+AC+    + +G      +    ++ +  +   ++D+  +  
Sbjct: 376 AMQLDGVVPNAVTLASLLSACASLCCLKQGKSLHAWVMRKKLDSDVLVVTALIDMYAKCN 435

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
            V  ++++      K     W  LL     + L
Sbjct: 436 AVSYSFQVFAKTSMKRTVP-WNALLSGLIHNEL 467


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  370 bits (951), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 195/509 (38%), Positives = 304/509 (59%), Gaps = 5/509 (0%)

Query: 95  QAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLM 154
           QA +++ +M+R+   PNAFT    LK+C  +      +  HG   K G     +V+  L+
Sbjct: 23  QALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLI 82

Query: 155 DVYATCCISMDNARLVF--NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEM 212
            +Y    + +DNAR VF  N    K  V +  L++GY  +      + +F++M  EGV +
Sbjct: 83  SMYCKGSL-VDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDAVLLFRQMNEEGVPV 141

Query: 213 NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYF 272
           N  +    + AC S   +  G  +H + +K+GF S++ V+N  + MY +   ++ A + F
Sbjct: 142 NSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLF 201

Query: 273 DEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALS 331
           DEM  K LI+WN +++GY ++G ++  L ++  M      P+  T   ++++CA L A S
Sbjct: 202 DEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQS 261

Query: 332 CGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG 391
            G +V   +   G   N  L NALI+MYA+CGN++ +Q +F  M +R LV+WT+++ GYG
Sbjct: 262 VGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYG 321

Query: 392 AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNK 450
            HGHG+ A++LF EM++SG+ PD   F+ VL+ACSHAGL D+GL+YFK M  +Y + P  
Sbjct: 322 MHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGP 381

Query: 451 EIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD 510
           E Y C+VDLLGRAGR+KEA  LI+SMP KPD +VWG LLGACK H+   L +LA  RV++
Sbjct: 382 EHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIE 441

Query: 511 LKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDK 570
           L+P  +G Y++LSNIY+     +   + R +M+    KK+ G S++E++ +V  FI  D+
Sbjct: 442 LEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDR 501

Query: 571 MGSHTQYVYGVLEMLIRHMNETAYEPDID 599
               +  +Y VLE L   + +   +P+ D
Sbjct: 502 NHLQSDEIYRVLEELEAIIMQEFGKPEKD 530



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 152/317 (47%), Gaps = 4/317 (1%)

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           W T +   A        L ++ +ML  G   N ++F  A+++CA+      G   H  + 
Sbjct: 8   WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 67

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE--MTEKDLITWNTIIAGY-EKSGSSEC 298
           K G      V   ++ MYC+   + +A + F+E   + K  + +N +++GY   S  S+ 
Sbjct: 68  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDA 127

Query: 299 LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDM 358
           + +F +M  E    N  T   +I AC +   L  G  +H   ++ G D ++++ N  I M
Sbjct: 128 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITM 187

Query: 359 YAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVF 418
           Y KCG+++ +QK+F EM  + L++W +M+ GY  +G     +EL+  M  +GV PD +  
Sbjct: 188 YMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTL 247

Query: 419 MAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPF 478
           + VL++C++ G    G +    M       N  +   ++++  R G + +A  +   MP 
Sbjct: 248 VGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPE 307

Query: 479 KPDESVWGPLLGACKEH 495
           +   S W  ++G    H
Sbjct: 308 RTLVS-WTAIIGGYGMH 323



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 189/393 (48%), Gaps = 30/393 (7%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDE--MPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
            + T LI  Y    L++ AR +F+E     +  V +  +++GY S +  + A  +F +M 
Sbjct: 76  FVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDAVLLFRQMN 135

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
              V  N+ TL  ++ AC    +L   + +H   +K G +  + V N  + +Y  C  S+
Sbjct: 136 EEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCG-SV 194

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           + A+ +F++M  K  +SW  +++GYA +G     L +++ M + GV  +P +    + +C
Sbjct: 195 NYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSC 254

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           A+ G  S G  +   +   GF SN  + N++++MY R   L+ A   FD M E+ L++W 
Sbjct: 255 ANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWT 314

Query: 285 TIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            II GY   G  E  + +F +M      P+   F  +++AC+           HAG+  +
Sbjct: 315 AIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACS-----------HAGLTDQ 363

Query: 344 GLD------GNLALA------NALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGY 390
           GL+       N  L       + ++D+  + G + ++Q +   M  + D   W +++   
Sbjct: 364 GLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGAC 423

Query: 391 GAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLT 423
             H + + A   F+ +++  + P+ I +  +L+
Sbjct: 424 KIHKNVELAELAFERVIE--LEPENIGYYVLLS 454


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  370 bits (951), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 194/564 (34%), Positives = 318/564 (56%), Gaps = 7/564 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           ++ +LI  Y   G + +AR LFD+   + VV+W  MI+GY +     +A  +F  M  N 
Sbjct: 235 VSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNH 294

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V  +  + +S++K C  +K L     +H   +K G      +  +LM  Y+ C   +D  
Sbjct: 295 VRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDAL 354

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           RL        N VSWT +I+G+  +      +G+F EM  +GV  N +++S+ + A    
Sbjct: 355 RLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALP-- 412

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             V     +HA V+K  +  +  V  ++LD Y +   + +A + F  +  KD++ W+ ++
Sbjct: 413 --VISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAML 470

Query: 288 AGYEKSGSSEC-LNMFSKMKSERFSPNCFTFTSIIAACA-TLAALSCGQQVHAGIVRRGL 345
           AGY ++G +E  + +FS++      PN FTF+SI+  CA T A++  G+Q H   ++  L
Sbjct: 471 AGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRL 530

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           D +L +++AL+ MYAK G+I  ++++F    ++DLV+W SM+ GY  HG   +A+++F E
Sbjct: 531 DSSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKE 590

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAG 464
           M K  V+ D + F+ V  AC+HAGLV+EG KYF  M  D  + P KE   C+VDL  RAG
Sbjct: 591 MKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAG 650

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           ++++A ++I +MP     ++W  +L AC+ H+   LG+LAA +++ + P     Y++LSN
Sbjct: 651 QLEKAMKVIDNMPNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPEDSAAYVLLSN 710

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           +YA  G W+E AK RK+M     KKE G SWIEV++K   F+A D+       +Y  LE 
Sbjct: 711 MYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYAFLAGDRSHPLKDQIYMKLED 770

Query: 585 LIRHMNETAYEPDIDCLIHDLEGE 608
           L   + +  YEPD   ++ D++ E
Sbjct: 771 LSTRLKDLGYEPDTSYVLQDIDDE 794



 Score =  232 bits (591), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 124/451 (27%), Positives = 245/451 (54%), Gaps = 9/451 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + T+L+ +Y      ++ R +FDEM ER+VV+WT +I+GY   + + +  T+F+ M    
Sbjct: 134 VGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEG 193

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
             PN+FT ++ L              VH + +K GL+ +I V NSL+++Y  C  ++  A
Sbjct: 194 TQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCG-NVRKA 252

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R++F+  + K+ V+W ++I+GYA +G     LG+F  M L  V ++  SF+  ++ CA+ 
Sbjct: 253 RILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANL 312

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLITWNTI 286
             + F + +H +V+K+GF  +  +  +++  Y +   + DA + F E     ++++W  +
Sbjct: 313 KELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAM 372

Query: 287 IAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+G+ +  G  E + +FS+MK +   PN FT++ I+ A   ++      +VHA +V+   
Sbjct: 373 ISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVISP----SEVHAQVVKTNY 428

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           + +  +  AL+D Y K G + ++ K+FS + ++D+V W++M+ GY   G  + AI++F E
Sbjct: 429 ERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSE 488

Query: 406 MVKSGVRPDRIVFMAVLTAC-SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
           + K GV+P+   F ++L  C +    + +G ++        ++ +  +   ++ +  + G
Sbjct: 489 LTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKG 548

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            ++ A E+ K    K D   W  ++    +H
Sbjct: 549 HIESAEEVFKRQREK-DLVSWNSMISGYAQH 578



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 136/466 (29%), Positives = 223/466 (47%), Gaps = 45/466 (9%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           A  LFD+ P+RD  S+T ++ G++      +A  +F+ +    +  +    SSVLK    
Sbjct: 50  AHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSAT 109

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTT 184
           +        +H   IK G    + V  SL+D Y     +  + R VF++MK +N V+WTT
Sbjct: 110 LCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGS-NFKDGRNVFDEMKERNVVTWTT 168

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG 244
           LI+GYA +      L +F  M  EG + N ++F+ A+   A  G    G  +H  V+K+G
Sbjct: 169 LISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNG 228

Query: 245 FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFS 303
               +PV NS++++Y +   +  A   FD+   K ++TWN++I+GY  +G   E L MF 
Sbjct: 229 LDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFY 288

Query: 304 KMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG 363
            M+      +  +F SII  CA L  L   +Q+H  +V+ G   +  +  AL+  Y+KC 
Sbjct: 289 SMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCM 348

Query: 364 NISDSQKIFSEMSDR-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
            + D+ ++F E     ++V+WT+M+ G+  +   +EA+ LF EM + GVRP+   +  +L
Sbjct: 349 AMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVIL 408

Query: 423 TACS-------HA------------------------GLVDEGLKYFKSMNDYNVNPNKE 451
           TA         HA                        G VDE  K F  ++      NK+
Sbjct: 409 TALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGID------NKD 462

Query: 452 IYGCVVDLLG--RAGRVKEAYELIKSMP---FKPDESVWGPLLGAC 492
           I      L G  +AG  + A ++   +     KP+E  +  +L  C
Sbjct: 463 IVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVC 508



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 79/247 (31%), Positives = 123/247 (49%), Gaps = 4/247 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S + T L+ +Y   G ++EA  +F  +  +D+V+W+ M+AGY        A  +F E+ +
Sbjct: 432 STVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTK 491

Query: 106 NEVNPNAFTLSSVLKACKGMK-SLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
             V PN FT SS+L  C     S+      HG AIK  L+ S+ V ++L+ +YA     +
Sbjct: 492 GGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKG-HI 550

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           ++A  VF   + K+ VSW ++I+GYA  G     L VFKEM    V+M+  +F     AC
Sbjct: 551 ESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAAC 610

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNS-ILDMYCRFDCLSDANQYFDEMTEKDLIT- 282
              G V  G+     +++    +     NS ++D+Y R   L  A +  D M      T 
Sbjct: 611 THAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNMPNLAGSTI 670

Query: 283 WNTIIAG 289
           W TI+A 
Sbjct: 671 WRTILAA 677


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 201/596 (33%), Positives = 328/596 (55%), Gaps = 36/596 (6%)

Query: 45  PSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           P++   N L+ +     L+ +   LF  MPERD VS+  +I G++S     ++  ++  +
Sbjct: 77  PNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRAL 136

Query: 104 VRNE-VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           +R E V P   TLS+++     +   +    VH   ++ G     +V + L+D+YA   +
Sbjct: 137 LREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGL 196

Query: 163 SMDNARLVFNDMKWK-------------------------------NDVSWTTLITGYAH 191
             D AR VF +M+ K                               + ++WTT++TG   
Sbjct: 197 IRD-ARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQ 255

Query: 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251
           +G     L VF+ M  EGV ++ Y+F   + AC +   +  GK IHA + +  +  N+ V
Sbjct: 256 NGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFV 315

Query: 252 MNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERF 310
            ++++DMY +   +  A   F  MT +++I+W  +I GY + + S E +  FS+M+ +  
Sbjct: 316 GSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGI 375

Query: 311 SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQK 370
            P+ FT  S+I++CA LA+L  G Q H   +  GL   + ++NAL+ +Y KCG+I D+ +
Sbjct: 376 KPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHR 435

Query: 371 IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           +F EMS  D V+WT+++ GY   G  KE I+LF++M+ +G++PD + F+ VL+ACS AGL
Sbjct: 436 LFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGL 495

Query: 431 VDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           V++G  YF SM  D+ + P  + Y C++DL  R+GR KEA E IK MP  PD   W  LL
Sbjct: 496 VEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLL 555

Query: 490 GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKK 549
            +C+      +GK AA  +L+  P    +Y++L +++AA+G+W E A  R+ MR    KK
Sbjct: 556 SSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKK 615

Query: 550 EVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDL 605
           E G SWI+ ++KV  F A+D+    +  +Y  LE L   M E  Y+PD+  ++HD+
Sbjct: 616 EPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDV 671



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/413 (27%), Positives = 208/413 (50%), Gaps = 39/413 (9%)

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P  F L+ +L A      L+ A  V      E  + +++  N+L+   A   +  D  RL
Sbjct: 46  PPTFLLNHLLTAYAKSGRLARARRV----FDEMPDPNLFTRNALLSALAHSRLVPDMERL 101

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAVRACASTG 228
            F  M  ++ VS+  LITG++ +G+    + +++ +L E  V     + S  +   ++  
Sbjct: 102 -FASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALS 160

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE-------------- 274
             + G  +H  V++ GFG+   V + ++DMY +   + DA + F E              
Sbjct: 161 DRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLIT 220

Query: 275 -----------------MTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFT 316
                            M ++D ITW T++ G  ++G   E L++F +M++E    + +T
Sbjct: 221 GLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYT 280

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           F SI+ AC  LAAL  G+Q+HA I R   + N+ + +AL+DMY+KC +I  ++ +F  M+
Sbjct: 281 FGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMT 340

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
            R++++WT+M++GYG +   +EA+  F EM   G++PD     +V+++C++   ++EG +
Sbjct: 341 CRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQ 400

Query: 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           +        +     +   +V L G+ G +++A+ L   M F  D+  W  L+
Sbjct: 401 FHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFH-DQVSWTALV 452


>gi|356514087|ref|XP_003525738.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 701

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 194/556 (34%), Positives = 322/556 (57%), Gaps = 5/556 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV-RN 106
           + + LI+ Y   G + +A  +F E P+ DVV WT +I GY        A   F  MV   
Sbjct: 141 VGSALIELYSKCGQMNDAVKVFTEYPKPDVVLWTSIITGYEQNGSPELALAFFSRMVVLE 200

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           +V+P+  TL S   AC  +   +    VHG   + G +  + + NS++++Y     S+  
Sbjct: 201 QVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTG-SIRI 259

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  +F +M +K+ +SW++++  YA +G     L +F EM+ + +E+N  +   A+RACAS
Sbjct: 260 AANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACAS 319

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
           +  +  GK IH   + +GF  ++ V  +++DMY +     +A + F+ M +KD+++W  +
Sbjct: 320 SSNLEEGKQIHKLAVNYGFELDITVSTALMDMYLKCFSPENAIELFNRMPKKDVVSWAVL 379

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
            +GY + G + + L +F  M S    P+      I+AA + L  +     +HA + + G 
Sbjct: 380 FSGYAEIGMAHKSLGVFCNMLSNGTRPDAIALVKILAASSELGIVQQALCLHAFVTKSGF 439

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           D N  +  +LI++YAKC +I ++ K+F  +   D+VTW+S++  YG HG G+EA++L  +
Sbjct: 440 DNNEFIGASLIELYAKCSSIDNANKVFKGLRHTDVVTWSSIIAAYGFHGQGEEALKLSHQ 499

Query: 406 MVK-SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRA 463
           M   S V+P+ + F+++L+ACSHAGL++EG+K F  M N+Y + PN E YG +VDLLGR 
Sbjct: 500 MSNHSDVKPNDVTFVSILSACSHAGLIEEGIKMFHVMVNEYQLMPNIEHYGIMVDLLGRM 559

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G + +A ++I +MP +    VWG LLGAC+ H+   +G+LAAL +  L PN  G Y +LS
Sbjct: 560 GELDKALDMINNMPMQAGPHVWGALLGACRIHQNIKIGELAALNLFLLDPNHAGYYTLLS 619

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           NIY  +  W + AK R +++    KK VG S +E++++V  FIA+D+    +  +Y +L 
Sbjct: 620 NIYCVDKNWHDAAKLRTLIKENRLKKIVGQSMVEIKNEVHSFIASDRFHGESDQIYEMLR 679

Query: 584 MLIRHMNETAYEPDID 599
            L   M E  Y+PD+ 
Sbjct: 680 KLDARMREEGYDPDLQ 695



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 129/455 (28%), Positives = 238/455 (52%), Gaps = 8/455 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S + T L   Y     +  A  LF+E P + V  W  ++  Y       +  ++F +M  
Sbjct: 36  SFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEGKWVETLSLFHQMNA 95

Query: 106 NEVN---PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           + V    P+ +T+S  LK+C G++ L    ++HG  +K+ ++  ++V ++L+++Y+ C  
Sbjct: 96  DAVTEERPDNYTVSIALKSCSGLQKLELGKMIHGF-LKKKIDSDMFVGSALIELYSKCG- 153

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEM-LLEGVEMNPYSFSIAV 221
            M++A  VF +    + V WT++ITGY  +G+    L  F  M +LE V  +P +   A 
Sbjct: 154 QMNDAVKVFTEYPKPDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAA 213

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
            ACA     + G+ +H  V + GF + L + NSIL++Y +   +  A   F EM  KD+I
Sbjct: 214 SACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRIAANLFREMPYKDII 273

Query: 282 TWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           +W++++A Y  +G+ +  LN+F++M  +R   N  T  S + ACA+ + L  G+Q+H   
Sbjct: 274 SWSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKQIHKLA 333

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           V  G + ++ ++ AL+DMY KC +  ++ ++F+ M  +D+V+W  +  GY   G   +++
Sbjct: 334 VNYGFELDITVSTALMDMYLKCFSPENAIELFNRMPKKDVVSWAVLFSGYAEIGMAHKSL 393

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLL 460
            +F  M+ +G RPD I  + +L A S  G+V + L     +     + N+ I   +++L 
Sbjct: 394 GVFCNMLSNGTRPDAIALVKILAASSELGIVQQALCLHAFVTKSGFDNNEFIGASLIELY 453

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            +   +  A ++ K +    D   W  ++ A   H
Sbjct: 454 AKCSSIDNANKVFKGLR-HTDVVTWSSIIAAYGFH 487



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 138/262 (52%), Gaps = 8/262 (3%)

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS 295
           +H+  +K G   +  V+  +  +Y R+  L  A++ F+E   K +  WN ++  Y   G 
Sbjct: 23  LHSQCLKVGLALDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEGK 82

Query: 296 -SECLNMFSKMKSERFS---PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLAL 351
             E L++F +M ++  +   P+ +T +  + +C+ L  L  G+ +H G +++ +D ++ +
Sbjct: 83  WVETLSLFHQMNADAVTEERPDNYTVSIALKSCSGLQKLELGKMIH-GFLKKKIDSDMFV 141

Query: 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK-SG 410
            +ALI++Y+KCG ++D+ K+F+E    D+V WTS++ GY  +G  + A+  F  MV    
Sbjct: 142 GSALIELYSKCGQMNDAVKVFTEYPKPDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQ 201

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470
           V PD +  ++  +AC+     + G      +     +    +   +++L G+ G ++ A 
Sbjct: 202 VSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRIAA 261

Query: 471 ELIKSMPFKPDESVWGPLLGAC 492
            L + MP+K D   W  ++ AC
Sbjct: 262 NLFREMPYK-DIISWSSMV-AC 281



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/170 (21%), Positives = 77/170 (45%), Gaps = 5/170 (2%)

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
           Q+H+  ++ GL  +  +   L  +YA+  ++  + K+F E   + +  W +++  Y   G
Sbjct: 22  QLHSQCLKVGLALDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEG 81

Query: 395 HGKEAIELFDEMVKSGV---RPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE 451
              E + LF +M    V   RPD       L +CS    ++ G K         ++ +  
Sbjct: 82  KWVETLSLFHQMNADAVTEERPDNYTVSIALKSCSGLQKLELG-KMIHGFLKKKIDSDMF 140

Query: 452 IYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLG 501
           +   +++L  + G++ +A ++    P KPD  +W  ++   +++  P L 
Sbjct: 141 VGSALIELYSKCGQMNDAVKVFTEYP-KPDVVLWTSIITGYEQNGSPELA 189


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 201/596 (33%), Positives = 328/596 (55%), Gaps = 36/596 (6%)

Query: 45  PSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           P++   N L+ +     L+ +   LF  MPERD VS+  +I G++S     ++  ++  +
Sbjct: 77  PNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRAL 136

Query: 104 VRNE-VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           +R E V P   TLS+++     +   +    VH   ++ G     +V + L+D+YA   +
Sbjct: 137 LREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGL 196

Query: 163 SMDNARLVFNDMKWK-------------------------------NDVSWTTLITGYAH 191
             D AR VF +M+ K                               + ++WTT++TG   
Sbjct: 197 IRD-ARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQ 255

Query: 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251
           +G     L VF+ M  EGV ++ Y+F   + AC +   +  GK IHA + +  +  N+ V
Sbjct: 256 NGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFV 315

Query: 252 MNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERF 310
            ++++DMY +   +  A   F  MT +++I+W  +I GY + + S E +  FS+M+ +  
Sbjct: 316 GSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGI 375

Query: 311 SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQK 370
            P+ FT  S+I++CA LA+L  G Q H   +  GL   + ++NAL+ +Y KCG+I D+ +
Sbjct: 376 KPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHR 435

Query: 371 IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           +F EMS  D V+WT+++ GY   G  KE I+LF++M+ +G++PD + F+ VL+ACS AGL
Sbjct: 436 LFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGL 495

Query: 431 VDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           V++G  YF SM  D+ + P  + Y C++DL  R+GR KEA E IK MP  PD   W  LL
Sbjct: 496 VEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLL 555

Query: 490 GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKK 549
            +C+      +GK AA  +L+  P    +Y++L +++AA+G+W E A  R+ MR    KK
Sbjct: 556 SSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKK 615

Query: 550 EVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDL 605
           E G SWI+ ++KV  F A+D+    +  +Y  LE L   M E  Y+PD+  ++HD+
Sbjct: 616 EPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDV 671



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/413 (27%), Positives = 208/413 (50%), Gaps = 39/413 (9%)

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P  F L+ +L A      L+ A  V      E  + +++  N+L+   A   +  D  RL
Sbjct: 46  PPTFLLNHLLTAYAKSGRLARARRV----FDEMPDPNLFTRNALLSALAHSRLVPDMERL 101

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAVRACASTG 228
            F  M  ++ VS+  LITG++ +G+    + +++ +L E  V     + S  +   ++  
Sbjct: 102 -FASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALS 160

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE-------------- 274
             + G  +H  V++ GFG+   V + ++DMY +   + DA + F E              
Sbjct: 161 DRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLIT 220

Query: 275 -----------------MTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFT 316
                            M ++D ITW T++ G  ++G   E L++F +M++E    + +T
Sbjct: 221 GLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYT 280

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           F SI+ AC  LAAL  G+Q+HA I R   + N+ + +AL+DMY+KC +I  ++ +F  M+
Sbjct: 281 FGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMT 340

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
            R++++WT+M++GYG +   +EA+  F EM   G++PD     +V+++C++   ++EG +
Sbjct: 341 CRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQ 400

Query: 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           +        +     +   +V L G+ G +++A+ L   M F  D+  W  L+
Sbjct: 401 FHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFH-DQVSWTALV 452



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/401 (23%), Positives = 172/401 (42%), Gaps = 50/401 (12%)

Query: 227 TGWVSFGKLIHAA-VIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           T +   G+L  A  V       NL   N++L        + D  + F  M E+D +++N 
Sbjct: 56  TAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNA 115

Query: 286 IIAGYEKSGS-SECLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           +I G+  +GS +  + ++  + + E   P   T +++I   + L+  + G  VH  ++R 
Sbjct: 116 LITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRL 175

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMS--------------------------- 376
           G      + + L+DMYAK G I D++++F EM                            
Sbjct: 176 GFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLF 235

Query: 377 ----DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD 432
               DRD +TWT+M+ G   +G   EA+++F  M   GV  D+  F ++LTAC     ++
Sbjct: 236 QLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALE 295

Query: 433 EGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG-- 490
           EG +    +       N  +   +VD+  +   ++ A  + + M  +   S    ++G  
Sbjct: 296 EGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYG 355

Query: 491 --ACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFR--KIMRGMG 546
             AC E  +    +   +++  +KP+      ++S+  A     EE A+F    ++ G+ 
Sbjct: 356 QNACSEEAVRAFSE---MQMDGIKPDDFTLGSVISSC-ANLASLEEGAQFHCLALVSGLM 411

Query: 547 SKKEVGMSWIEVRDKVCGFIAN-----DKMGSHTQYVYGVL 582
               V  + + +  K CG I +     D+M  H Q  +  L
Sbjct: 412 RYITVSNALVTLYGK-CGSIEDAHRLFDEMSFHDQVSWTAL 451


>gi|115468242|ref|NP_001057720.1| Os06g0506100 [Oryza sativa Japonica Group]
 gi|52075894|dbj|BAD45840.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113595760|dbj|BAF19634.1| Os06g0506100 [Oryza sativa Japonica Group]
          Length = 766

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 197/559 (35%), Positives = 319/559 (57%), Gaps = 6/559 (1%)

Query: 43  KGPSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFV 101
           +G  ++  N L+  Y   GL+++   LF+ + ++D++SW  +IAG+       +A  VF 
Sbjct: 183 RGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFR 242

Query: 102 EM-VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
           EM V    +PN F   S  +AC  + S      +HG++IK  L+  +YV  SL D+YA C
Sbjct: 243 EMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARC 302

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
             ++D+AR+ F  ++  + VSW +++  Y+  G     L +F EM   G+  +  +    
Sbjct: 303 -KNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGL 361

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           + AC     +  G+LIH+ ++K G   ++ V NS+L MY R   LS A   F E+ ++D+
Sbjct: 362 LCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDV 421

Query: 281 ITWNTII-AGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           +TWN+I+ A  + +   E L +FS +     S +  +  ++++A A L      +QVHA 
Sbjct: 422 VTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAY 481

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEM-SDRDLVTWTSMMIGYGAHGHGKE 398
             + GL  +  L+N LID YAKCG++ D+ ++F  M ++RD+ +W+S+++GY   G+ KE
Sbjct: 482 AFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKE 541

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVV 457
           A +LF  M   G+RP+ + F+ VLTACS  G V+EG  Y+  M  +Y + P +E   C+V
Sbjct: 542 AFDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIMEPEYGIVPTREHCSCIV 601

Query: 458 DLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG 517
           DLL RAG++ EA   I  MPF+PD  +W  LL A K H    +GK AA  +L++ P+   
Sbjct: 602 DLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASKMHNDMEMGKRAAEGILNIDPSHSA 661

Query: 518 TYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQY 577
            Y++L NIYAA G W EFA+ +K MR  G KK  G SW++++ ++  FI  D+    ++ 
Sbjct: 662 AYVLLCNIYAASGNWNEFARLKKAMRTSGVKKSPGKSWVKLKGELKVFIVEDRSHPESEE 721

Query: 578 VYGVLEMLIRHMNETAYEP 596
           +Y +LE++   M +  Y P
Sbjct: 722 IYAMLELIGMEMIKAGYVP 740



 Score =  242 bits (617), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 147/491 (29%), Positives = 247/491 (50%), Gaps = 13/491 (2%)

Query: 32  SSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFN 91
           +S  S P     G ++L  +LI  Y      + AR +FDEMP R+ VSW  +IA +    
Sbjct: 72  ASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSARQVFDEMPARNPVSWASVIAAHVQNG 131

Query: 92  CHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVEN 151
               A  +F  M+R+    + F L S ++AC  +  +     VH  A+K      + V+N
Sbjct: 132 RAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQN 191

Query: 152 SLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVE 211
           +L+ +Y+   + +D+  ++F  +K K+ +SW ++I G+A  G     L VF+EM++EG  
Sbjct: 192 ALVTMYSKNGL-VDDGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSH 250

Query: 212 M-NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQ 270
             N + F  A RAC + G   +G+ IH   IK+    +L V  S+ DMY R   L  A  
Sbjct: 251 HPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARV 310

Query: 271 YFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAA 329
            F  +   DL++WN+I+  Y   G  SE L +FS+M+     P+  T   ++ AC    A
Sbjct: 311 AFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDA 370

Query: 330 LSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIG 389
           L  G+ +H+ +V+ GLDG++++ N+L+ MYA+C ++S +  +F E+ D+D+VTW S++  
Sbjct: 371 LYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTA 430

Query: 390 YGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN 449
              H H +E ++LF  + KS    DRI    VL+A +  G  +   +         +  +
Sbjct: 431 CAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAGLVDD 490

Query: 450 KEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL------GACKEHRLPNLGKL 503
           + +   ++D   + G + +A  L + M    D   W  L+      G  KE         
Sbjct: 491 RMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKE----AFDLF 546

Query: 504 AALRVLDLKPN 514
           + +R L ++PN
Sbjct: 547 SRMRSLGIRPN 557



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 126/439 (28%), Positives = 215/439 (48%), Gaps = 21/439 (4%)

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEG-------LEGSIYVENSLMDVYATCCISMDNAR 168
           ++++ AC  ++SL     VH   +          L G+  + N L+ +Y  C  + D+AR
Sbjct: 48  AALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCA-APDSAR 106

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            VF++M  +N VSW ++I  +  +G     LG+F  ML  G   + ++   AVRAC   G
Sbjct: 107 QVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELG 166

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            V  G+ +HA  +K   GS+L V N+++ MY +   + D    F+ + +KDLI+W +IIA
Sbjct: 167 DVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIA 226

Query: 289 GYEKSG-SSECLNMFSKMKSE-RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           G+ + G   E L +F +M  E    PN F F S   AC  + +   G+Q+H   ++  LD
Sbjct: 227 GFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLD 286

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            +L +  +L DMYA+C N+  ++  F  +   DLV+W S++  Y   G   EA+ LF EM
Sbjct: 287 RDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEM 346

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
             SG+RPD I    +L AC     +  G      +    ++ +  +   ++ +  R   +
Sbjct: 347 RDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDL 406

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDL----KPNMMGTYIIL 522
             A ++   +    D   W  +L AC +H  P       L++  L    +P++    I L
Sbjct: 407 SSAMDVFHEIK-DQDVVTWNSILTACAQHNHPE----EVLKLFSLLNKSEPSL--DRISL 459

Query: 523 SNIYAAEGKWEEFAKFRKI 541
           +N+ +A  +   F   +++
Sbjct: 460 NNVLSASAELGYFEMVKQV 478


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 197/554 (35%), Positives = 322/554 (58%), Gaps = 4/554 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S++   L+  Y       +AR +FDEM  RD V++  MI GY       ++  +F+E + 
Sbjct: 242 SVVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLENL- 300

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           ++  P+  T++SVL AC  ++ LS A  ++   ++ G      V+N L+DVYA C   M 
Sbjct: 301 DQFKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCG-DMI 359

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            AR VFN M+ K+ VSW ++I+GY  SG+    + +FK M++   + +  ++ + +    
Sbjct: 360 TARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLST 419

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               + FGK +H+  IK G   +L V N+++DMY +   + D+ + F+ M   D +TWNT
Sbjct: 420 RLADLKFGKGLHSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNT 479

Query: 286 IIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I+   + G  +  L + ++M+  +  P+  TF   +  CA+LAA   G+++H  ++R G
Sbjct: 480 VISACVRFGDFATGLQVTTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFG 539

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
            +  L + NALI+MY+KCG +  S ++F  MS RD+VTWT M+  YG +G G++A+E F 
Sbjct: 540 YESELQIGNALIEMYSKCGCLESSFRVFERMSRRDVVTWTGMIYAYGMYGEGEKALESFV 599

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRA 463
           +M KSG+ PD +VF+A++ ACSH+GLV++GL  F+ M   Y ++P  E Y CVVDLL R+
Sbjct: 600 DMEKSGIVPDSVVFIALIYACSHSGLVEKGLACFEKMKTHYKIDPMIEHYACVVDLLSRS 659

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
            ++ +A E I++MP +PD S+W  +L AC+        +  + R+++L P+  G  I+ S
Sbjct: 660 QKISKAEEFIQAMPIEPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILAS 719

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           N YAA  KW++ +  RK +R    KK  G SWIE+  KV  F + D     ++ ++  LE
Sbjct: 720 NAYAALRKWDKVSLIRKSVRDKHIKKNPGYSWIEIGKKVHVFCSGDDSAPQSEAIHKSLE 779

Query: 584 MLIRHMNETAYEPD 597
           +L   M +  Y PD
Sbjct: 780 ILYSLMAKEGYIPD 793



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 125/441 (28%), Positives = 226/441 (51%), Gaps = 4/441 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+  Y   GL+  AR +FDEMP RD+VSW  +I+GY+S   + +A  ++ E+  + + P+
Sbjct: 147 LVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELRNSWIVPD 206

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
           +FT+SSVL A   +  +     +HG  +K G+     V N L+ +Y       D AR VF
Sbjct: 207 SFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGLLAMYLKFSRPTD-ARRVF 265

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           ++M  ++ V++ T+I GY         + +F E  L+  + +  + +  + AC     +S
Sbjct: 266 DEMVVRDSVTYNTMICGYLKLEMVEESVKMFLEN-LDQFKPDILTVTSVLCACGHLRDLS 324

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
             K I+  +++ GF     V N ++D+Y +   +  A   F+ M  KD ++WN+II+GY 
Sbjct: 325 LAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYI 384

Query: 292 KSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           +SG   E + +F  M       +  T+  +I+    LA L  G+ +H+  ++ G+  +L+
Sbjct: 385 QSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKGLHSNGIKSGIYIDLS 444

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           ++NALIDMYAKCG + DS KIF+ M   D VTW +++      G     +++  +M K+ 
Sbjct: 445 VSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVISACVRFGDFATGLQVTTQMRKNK 504

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470
           V PD   F+  L  C+       G +    +  +      +I   ++++  + G ++ ++
Sbjct: 505 VVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLESSF 564

Query: 471 ELIKSMPFKPDESVWGPLLGA 491
            + + M  + D   W  ++ A
Sbjct: 565 RVFERMS-RRDVVTWTGMIYA 584



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 122/425 (28%), Positives = 225/425 (52%), Gaps = 12/425 (2%)

Query: 73  PERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAA 132
           P ++V  W  +I  ++      +A   + ++  ++V+P+ +T  SV+KAC G+       
Sbjct: 67  PAKNVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGD 126

Query: 133 LVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHS 192
           LV+   ++ G E  +YV N+L+D+Y+   + +  AR VF++M  ++ VSW +LI+GY+  
Sbjct: 127 LVYKQILEMGFESDLYVGNALVDMYSRMGL-LSRARQVFDEMPVRDLVSWNSLISGYSSH 185

Query: 193 GNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVM 252
           G     L ++ E+    +  + ++ S  + A A+   V  G+ +H   +K G  S   V 
Sbjct: 186 GYYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVN 245

Query: 253 NSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEK-SGSSECLNMFSKMKSERFS 311
           N +L MY +F   +DA + FDEM  +D +T+NT+I GY K     E + MF +   ++F 
Sbjct: 246 NGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLE-NLDQFK 304

Query: 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKI 371
           P+  T TS++ AC  L  LS  + ++  ++R G      + N LID+YAKCG++  ++ +
Sbjct: 305 PDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDV 364

Query: 372 FSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLV 431
           F+ M  +D V+W S++ GY   G   EA++LF  M+    + D I ++ +++  +   L 
Sbjct: 365 FNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTR--LA 422

Query: 432 DEGLKYFKSMNDYNVNP----NKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGP 487
           D  LK+ K ++   +      +  +   ++D+  + G V ++ ++  SM    D   W  
Sbjct: 423 D--LKFGKGLHSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMG-TLDTVTWNT 479

Query: 488 LLGAC 492
           ++ AC
Sbjct: 480 VISAC 484



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 184/371 (49%), Gaps = 3/371 (0%)

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179
           +A     +L+    +H + I  GL+GS +    L+D Y+       +  +       KN 
Sbjct: 12  RALSSSSNLNELRRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVFRRVSPAKNV 71

Query: 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAA 239
             W ++I  ++ +G     L  + ++    V  + Y+F   ++ACA       G L++  
Sbjct: 72  YIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYKQ 131

Query: 240 VIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSEC 298
           +++ GF S+L V N+++DMY R   LS A Q FDEM  +DL++WN++I+GY   G   E 
Sbjct: 132 ILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEA 191

Query: 299 LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDM 358
           L ++ ++++    P+ FT +S++ A A L  +  GQ +H   ++ G++    + N L+ M
Sbjct: 192 LEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGLLAM 251

Query: 359 YAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVF 418
           Y K    +D++++F EM  RD VT+ +M+ GY      +E++++F E +    +PD +  
Sbjct: 252 YLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLENLDQ-FKPDILTV 310

Query: 419 MAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPF 478
            +VL AC H   +      +  M          +   ++D+  + G +  A ++  SM  
Sbjct: 311 TSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSMEC 370

Query: 479 KPDESVWGPLL 489
           K D   W  ++
Sbjct: 371 K-DTVSWNSII 380


>gi|449461477|ref|XP_004148468.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
 gi|449515698|ref|XP_004164885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
          Length = 837

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 198/554 (35%), Positives = 316/554 (57%), Gaps = 9/554 (1%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y   G ++  + LFD +  ++++SWT MIAGY   +   +A  +  EM R    P+
Sbjct: 284 LIDFYTKCGRVKAGKALFDRLDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFRMGWKPD 343

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
            +  SSVL +C  + +L +   +H   IK  LE   +V N+L+D+Y+ C  ++D+A+ VF
Sbjct: 344 EYACSSVLTSCGSVDALQHGRQIHSYVIKVCLEHDNFVTNALIDMYSKCN-ALDDAKRVF 402

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           + +   + V +  +I GY+  G   G L VF+EM L+ V  +  +F   +   A+   + 
Sbjct: 403 DVVTCHSVVYYNAMIEGYSRQGYLCGALEVFQEMRLKHVSPSFLTFVSLLGLSAALLCLQ 462

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
             K IH  +IK+GF  +    ++++D+Y +  C+ DA   F+  T KD++ WN++ +GY 
Sbjct: 463 LSKQIHGLIIKYGFSLDKFTSSALIDVYSKCSCIRDARYVFEGTTNKDIVVWNSLFSGYN 522

Query: 292 -KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
            +  S E   ++S ++  R  PN FTF ++  A + LA+L  GQQ H  +++ GL+ +  
Sbjct: 523 LQLKSEEAFKLYSDLQLSRERPNEFTFAALTTAASILASLPHGQQFHNQVMKMGLESDPF 582

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           + NAL+DMYAKCG++ +++KIFS    +D   W SM+  Y  HG  +EA+ +F+ MV + 
Sbjct: 583 ITNALVDMYAKCGSVEEAEKIFSSSVWKDTACWNSMISMYAQHGKVEEALRMFETMVSNN 642

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470
           + P+ + F++VL+ACSH G V++GL+++ SM  Y + P  E Y  VV LLGRAGR+ EA 
Sbjct: 643 INPNYVTFVSVLSACSHVGFVEDGLQHYNSMARYGIEPGIEHYASVVTLLGRAGRLTEAR 702

Query: 471 ELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEG 530
           E I+ M  +P   VW  LL AC+      L K AA   + + P   G+Y++LSNI+A++G
Sbjct: 703 EFIEKMTIRPAALVWRSLLSACRVFGNVELAKHAAEMAISIDPMDSGSYVMLSNIFASKG 762

Query: 531 KWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMN 590
            W +  + R  M   G  KE G SWIEV  +V  F++ DK+   T  +Y  L+ L   M 
Sbjct: 763 MWGDVKRLRLKMDVNGVVKEPGQSWIEVNGEVHIFVSRDKVHDETDLIYLALDELTTQMK 822

Query: 591 ETAYEPDIDCLIHD 604
                 D+ C +HD
Sbjct: 823 ------DVGC-VHD 829



 Score =  218 bits (554), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 136/485 (28%), Positives = 249/485 (51%), Gaps = 11/485 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + T+L+  Y   G I++AR +FD +  +  V+WT +I GYT       +  +F  M+ + 
Sbjct: 179 VGTSLVVLYAKHGEIDKARLVFDGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMMESN 238

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V P+ + LSS+L AC  +  L     +H   ++   +  +   N L+D Y T C  +   
Sbjct: 239 VIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMDVSTYNVLIDFY-TKCGRVKAG 297

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           + +F+ +  KN +SWTT+I GY  +   +  + +  EM   G + + Y+ S  + +C S 
Sbjct: 298 KALFDRLDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSV 357

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  G+ IH+ VIK     +  V N+++DMY + + L DA + FD +T   ++ +N +I
Sbjct: 358 DALQHGRQIHSYVIKVCLEHDNFVTNALIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMI 417

Query: 288 AGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            GY + G     L +F +M+ +  SP+  TF S++   A L  L   +Q+H  I++ G  
Sbjct: 418 EGYSRQGYLCGALEVFQEMRLKHVSPSFLTFVSLLGLSAALLCLQLSKQIHGLIIKYGFS 477

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            +   ++ALID+Y+KC  I D++ +F   +++D+V W S+  GY      +EA +L+ ++
Sbjct: 478 LDKFTSSALIDVYSKCSCIRDARYVFEGTTNKDIVVWNSLFSGYNLQLKSEEAFKLYSDL 537

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
             S  RP+   F A+ TA S    +  G ++   +    +  +  I   +VD+  + G V
Sbjct: 538 QLSRERPNEFTFAALTTAASILASLPHGQQFHNQVMKMGLESDPFITNALVDMYAKCGSV 597

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKL-AALRVLD--LKPNMMGTYIILS 523
           +EA ++  S  +K D + W  ++    +H     GK+  ALR+ +  +  N+   Y+   
Sbjct: 598 EEAEKIFSSSVWK-DTACWNSMISMYAQH-----GKVEEALRMFETMVSNNINPNYVTFV 651

Query: 524 NIYAA 528
           ++ +A
Sbjct: 652 SVLSA 656



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 130/445 (29%), Positives = 235/445 (52%), Gaps = 4/445 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            L+  L+ SYF  G + +A TLFD+MP R++VSW+ +++ YT    + +A   F+E  R 
Sbjct: 76  FLSNLLLHSYFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYTQLGYNEKALLYFLEFQRT 135

Query: 107 EVNP-NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
            V+  N + L+S+++AC         + VH   IK G    +YV  SL+ +YA     +D
Sbjct: 136 CVDKLNEYILASIIRACVQRDGGEPGSQVHSYVIKSGFGEDVYVGTSLVVLYAKHG-EID 194

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            ARLVF+ +  K  V+WT +ITGY  SG     L +F  M+   V  + Y  S  + AC+
Sbjct: 195 KARLVFDGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMMESNVIPDKYVLSSILNACS 254

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
             G++  GK IHA V++     ++   N ++D Y +   +      FD +  K++I+W T
Sbjct: 255 VLGYLKGGKQIHAYVLRSETKMDVSTYNVLIDFYTKCGRVKAGKALFDRLDVKNIISWTT 314

Query: 286 IIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +IAGY + S   E + +  +M    + P+ +  +S++ +C ++ AL  G+Q+H+ +++  
Sbjct: 315 MIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSVDALQHGRQIHSYVIKVC 374

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           L+ +  + NALIDMY+KC  + D++++F  ++   +V + +M+ GY   G+   A+E+F 
Sbjct: 375 LEHDNFVTNALIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMIEGYSRQGYLCGALEVFQ 434

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
           EM    V P  + F+++L   +    +    +    +  Y  + +K     ++D+  +  
Sbjct: 435 EMRLKHVSPSFLTFVSLLGLSAALLCLQLSKQIHGLIIKYGFSLDKFTSSALIDVYSKCS 494

Query: 465 RVKEAYELIKSMPFKPDESVWGPLL 489
            +++A  + +    K D  VW  L 
Sbjct: 495 CIRDARYVFEGTTNK-DIVVWNSLF 518



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 181/357 (50%), Gaps = 3/357 (0%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM 174
           L+++L A    KS+     VH   +  GL+  +++ N L+  Y     S+ +A  +F+ M
Sbjct: 43  LANLLLAPVSNKSILYYRKVHCQVVLWGLQYDVFLSNLLLHSYFKIG-SVFDAGTLFDKM 101

Query: 175 KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVE-MNPYSFSIAVRACASTGWVSFG 233
             +N VSW+++++ Y   G     L  F E     V+ +N Y  +  +RAC        G
Sbjct: 102 PNRNLVSWSSVVSMYTQLGYNEKALLYFLEFQRTCVDKLNEYILASIIRACVQRDGGEPG 161

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
             +H+ VIK GFG ++ V  S++ +Y +   +  A   FD +  K  +TW  II GY KS
Sbjct: 162 SQVHSYVIKSGFGEDVYVGTSLVVLYAKHGEIDKARLVFDGLVLKTPVTWTAIITGYTKS 221

Query: 294 GSSEC-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
           G SE  L +F+ M      P+ +  +SI+ AC+ L  L  G+Q+HA ++R     +++  
Sbjct: 222 GRSEVSLQLFNLMMESNVIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMDVSTY 281

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
           N LID Y KCG +   + +F  +  +++++WT+M+ GY  + +  EA+EL  EM + G +
Sbjct: 282 NVLIDFYTKCGRVKAGKALFDRLDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFRMGWK 341

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
           PD     +VLT+C     +  G +    +    +  +  +   ++D+  +   + +A
Sbjct: 342 PDEYACSSVLTSCGSVDALQHGRQIHSYVIKVCLEHDNFVTNALIDMYSKCNALDDA 398



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 128/259 (49%), Gaps = 2/259 (0%)

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           A  S   + + + +H  V+  G   ++ + N +L  Y +   + DA   FD+M  ++L++
Sbjct: 49  APVSNKSILYYRKVHCQVVLWGLQYDVFLSNLLLHSYFKIGSVFDAGTLFDKMPNRNLVS 108

Query: 283 WNTIIAGYEKSGSSE--CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           W+++++ Y + G +E   L      ++     N +   SII AC        G QVH+ +
Sbjct: 109 WSSVVSMYTQLGYNEKALLYFLEFQRTCVDKLNEYILASIIRACVQRDGGEPGSQVHSYV 168

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           ++ G   ++ +  +L+ +YAK G I  ++ +F  +  +  VTWT+++ GY   G  + ++
Sbjct: 169 IKSGFGEDVYVGTSLVVLYAKHGEIDKARLVFDGLVLKTPVTWTAIITGYTKSGRSEVSL 228

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLL 460
           +LF+ M++S V PD+ V  ++L ACS  G +  G +    +       +   Y  ++D  
Sbjct: 229 QLFNLMMESNVIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMDVSTYNVLIDFY 288

Query: 461 GRAGRVKEAYELIKSMPFK 479
            + GRVK    L   +  K
Sbjct: 289 TKCGRVKAGKALFDRLDVK 307


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 190/514 (36%), Positives = 307/514 (59%), Gaps = 9/514 (1%)

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           ++ +E NP   T   ++ +     SLS+A  VH + +  G +   ++   L+++++    
Sbjct: 60  LLSHESNPTQQTCELLILSAARRNSLSDALDVHQLLVDGGFDQDPFLATKLINMFSEL-D 118

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
           ++DNAR VF+  + +    W  L    A +G G   L ++  M + GV  + ++++  ++
Sbjct: 119 TVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLK 178

Query: 223 AC-ASTGWVSF---GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK 278
           AC AS   VSF   GK IHA +++HG+G+++ VM +++DMY RF C+S A+  FDEM  K
Sbjct: 179 ACVASECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVK 238

Query: 279 DLITWNTIIAGYEKSGSS-ECLNMFSKM--KSERFSPNCFTFTSIIAACATLAALSCGQQ 335
           ++++W+ +IA Y K+G   E L +F +M   +    PN  T  S++ ACA  AAL  G+ 
Sbjct: 239 NVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKL 298

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
           +HA I+RRGLD  L + +ALI MYA+CG +   Q IF  M  +D+V W S++  YG HG+
Sbjct: 299 IHAYILRRGLDSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGY 358

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYG 454
           G++AI++F+EM+  G  P  I F++VL ACSH GLV+EG K F+SM  ++ + P+ E Y 
Sbjct: 359 GRKAIKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYA 418

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514
           C+VDLLGRA R+ EA ++I+ +  +P   VWG LLGAC+ H    L + A+ R+  L+P 
Sbjct: 419 CMVDLLGRANRLDEAAKIIEDLRIEPGPKVWGSLLGACRIHCHVELAERASKRLFKLEPT 478

Query: 515 MMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSH 574
             G Y++L++IYA    W+E  + +K++     +K  G SWIEVR K+  F + D+    
Sbjct: 479 NAGNYVLLADIYAEAEMWDEVKRVKKLLDSRELQKVPGRSWIEVRRKIYSFTSVDEFNPQ 538

Query: 575 TQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
            + ++ +L  L   M +  Y P    +++DL+ E
Sbjct: 539 GEQLHALLVNLSNEMKQRGYTPQTKLVLYDLDQE 572



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/359 (27%), Positives = 183/359 (50%), Gaps = 12/359 (3%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            LAT LI  + +   ++ AR +FD+  +R +  W  +          N    ++  M   
Sbjct: 105 FLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMM 164

Query: 107 EVNPNAFTLSSVLKACKG----MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-C 161
            V+ + FT + +LKAC      +  L     +H   ++ G    ++V  +LMD+YA   C
Sbjct: 165 GVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGC 224

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI-- 219
           +S  +A  VF++M  KN VSW+ +I  YA +G  Y  L +F+EM+L   +  P S ++  
Sbjct: 225 VSYASA--VFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVS 282

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
            ++ACA+   +  GKLIHA +++ G  S LPV+++++ MY R   L      FD M +KD
Sbjct: 283 VLQACAAFAALEQGKLIHAYILRRGLDSILPVISALITMYARCGKLESGQLIFDRMHKKD 342

Query: 280 LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           ++ WN++I+ Y   G   + + +F +M    FSP+  +F S++ AC+    +  G+++  
Sbjct: 343 VVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFE 402

Query: 339 GIVR-RGLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGH 395
            +V+  G+  ++     ++D+  +   + ++ KI  ++  +     W S++     H H
Sbjct: 403 SMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPKVWGSLLGACRIHCH 461


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 191/556 (34%), Positives = 312/556 (56%), Gaps = 3/556 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+  Y   GL  +A  +F  + + DVVSW+ +I          +A  VF  M  + V PN
Sbjct: 371 LVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPN 430

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
            FTL+S++ A   +  L     +H    K G E    V N+L+ +Y       D  R VF
Sbjct: 431 QFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCR-VF 489

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
                ++ +SW  L++G+  +     GL +F +ML EG   N Y+F   +R+C+S   V 
Sbjct: 490 EATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVD 549

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            GK +HA ++K+    N  V  +++DMY +   L DA   F+ + ++DL  W  I+AGY 
Sbjct: 550 LGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYA 609

Query: 292 KSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           + G  E  +  F +M+ E   PN FT  S ++ C+ +A L  G+Q+H+  ++ G  G++ 
Sbjct: 610 QDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMF 669

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           +A+AL+DMYAKCG + D++ +F  +  RD V+W +++ GY  HG G +A++ F+ M+  G
Sbjct: 670 VASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEG 729

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEA 469
             PD + F+ VL+ACSH GL++EG K+F S++  Y + P  E Y C+VD+LGRAG+  E 
Sbjct: 730 TVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEV 789

Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529
              I+ M    +  +W  +LGACK H     G+ AA+++ +L+P +   YI+LSN++AA+
Sbjct: 790 ESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAK 849

Query: 530 GKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHM 589
           G W++    R +M   G KKE G SW+EV  +V  F+++D      + ++  L+ L + +
Sbjct: 850 GMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKL 909

Query: 590 NETAYEPDIDCLIHDL 605
               Y P+ D ++H++
Sbjct: 910 MSVGYTPNTDHVLHNV 925



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 131/441 (29%), Positives = 228/441 (51%), Gaps = 3/441 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S L  +L+  Y   G    A  +F E+PERDVVSWT +I G+ +    + A  +F EM R
Sbjct: 163 SHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRR 222

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             V  N FT ++ LKAC     L     VH  AIK G    ++V ++L+D+YA C   M 
Sbjct: 223 EGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCG-EMV 281

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A  VF  M  +N VSW  L+ G+A  G+    L +F  M    +  + ++ S  ++ CA
Sbjct: 282 LAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCA 341

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           ++G +  G+++H+  I+ G   +  +   ++DMY +     DA + F  + + D+++W+ 
Sbjct: 342 NSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSA 401

Query: 286 IIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           II   ++ G S E   +F +M+     PN FT  S+++A   L  L  G+ +HA + + G
Sbjct: 402 IITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYG 461

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
            + +  + NAL+ MY K G++ D  ++F   ++RDL++W +++ G+  +      + +F+
Sbjct: 462 FEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFN 521

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
           +M+  G  P+   F+++L +CS    VD G +    +   +++ N  +   +VD+  +  
Sbjct: 522 QMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAK-N 580

Query: 465 RVKEAYELIKSMPFKPDESVW 485
           R  E  E I +   K D   W
Sbjct: 581 RFLEDAETIFNRLIKRDLFAW 601



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 218/414 (52%), Gaps = 13/414 (3%)

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMK 175
           S +L+ C     L+    +HG  IK G+    ++ NSL++VYA C  S + A  VF ++ 
Sbjct: 132 SGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCG-SANYACKVFGEIP 190

Query: 176 WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKL 235
            ++ VSWT LITG+   G G G + +F EM  EGVE N ++++ A++AC+    + FGK 
Sbjct: 191 ERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQ 250

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS 295
           +HA  IK G  S+L V ++++D+Y +   +  A + F  M +++ ++WN ++ G+ + G 
Sbjct: 251 VHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGD 310

Query: 296 SE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
           +E  LN+F +M     + + FT ++++  CA    L  GQ VH+  +R G + +  ++  
Sbjct: 311 AEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCC 370

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
           L+DMY+KCG   D+ K+F  + D D+V+W++++      G  +EA E+F  M  SGV P+
Sbjct: 371 LVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPN 430

Query: 415 RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
           +    ++++A +  G +  G      +  Y    +  +   +V +  + G V++   + +
Sbjct: 431 QFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFE 490

Query: 475 SMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD------LKPNMMGTYIIL 522
           +   + D   W  LL    ++   + G    LR+ +        PNM     IL
Sbjct: 491 ATTNR-DLISWNALLSGFHDNETCDTG----LRIFNQMLAEGFNPNMYTFISIL 539



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 137/257 (53%), Gaps = 5/257 (1%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   + T L+  Y     +E+A T+F+ + +RD+ +WTV++AGY       +A   F++M
Sbjct: 565 GNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQM 624

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CI 162
            R  V PN FTL+S L  C  + +L +   +H MAIK G  G ++V ++L+D+YA C C+
Sbjct: 625 QREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCV 684

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
             ++A +VF+ +  ++ VSW T+I GY+  G G   L  F+ ML EG   +  +F   + 
Sbjct: 685 --EDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLS 742

Query: 223 ACASTGWVSFGKLIHAAVIK-HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDL 280
           AC+  G +  GK    ++ K +G    +     ++D+  R     +   + +EM    ++
Sbjct: 743 ACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNV 802

Query: 281 ITWNTIIAGYEKSGSSE 297
           + W T++   +  G+ E
Sbjct: 803 LIWETVLGACKMHGNIE 819



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 144/274 (52%), Gaps = 2/274 (0%)

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
           +S  +R CAS G ++ GK IH  VIK G   +  + NS++++Y +    + A + F E+ 
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 190

Query: 277 EKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ 335
           E+D+++W  +I G+   G  S  +N+F +M+ E    N FT+ + + AC+    L  G+Q
Sbjct: 191 ERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQ 250

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
           VHA  ++ G   +L + +AL+D+YAKCG +  ++++F  M  ++ V+W +++ G+   G 
Sbjct: 251 VHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGD 310

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455
            ++ + LF  M  S +   +     VL  C+++G +  G              ++ I  C
Sbjct: 311 AEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCC 370

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           +VD+  + G   +A ++   +   PD   W  ++
Sbjct: 371 LVDMYSKCGLAGDALKVFVRIE-DPDVVSWSAII 403



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 107/207 (51%), Gaps = 8/207 (3%)

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           ++ ++  CA+   L+ G+ +H  +++ G++ +  L N+L+++YAKCG+ + + K+F E+ 
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 190

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
           +RD+V+WT+++ G+ A G+G  A+ LF EM + GV  +   +   L ACS    ++ G +
Sbjct: 191 ERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQ 250

Query: 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR 496
                       +  +   +VDL  + G +  A  +   MP K +   W  LL       
Sbjct: 251 VHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMP-KQNAVSWNALLNG----- 304

Query: 497 LPNLGKLAALRVLDLKPNMMGTYIILS 523
              +G   A +VL+L   M G+ I  S
Sbjct: 305 FAQMGD--AEKVLNLFCRMTGSEINFS 329


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 198/569 (34%), Positives = 320/569 (56%), Gaps = 9/569 (1%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           GP I       +Y   G +  A   F+ +   ++ SW  ++A ++   C      +F  M
Sbjct: 50  GPMIFG-----AYIQLGSLHVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRM 104

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           ++     ++F L   +KAC G+     A L H +AIK  LEG  YV  +LM+VY T   S
Sbjct: 105 LKEGKLVDSFNLVFAVKACFGLSLFQGAKLFHSLAIKLRLEGDPYVAPALMNVY-TELGS 163

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           ++ A  VF ++  KN V W  +I G+ +    +G   +F  M   G E++P+     ++A
Sbjct: 164 LEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQA 223

Query: 224 CASTGWVSFGKLIHAAVIKHGF-GSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           C +      GK  H   IK  F  SN  +  S++DMY +   L  A + F+E++ +D++ 
Sbjct: 224 CGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVV 283

Query: 283 WNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           W+ IIAG+ ++G + E ++MF +M ++  +PN  TF SI+ AC++L +L  G+ VH  ++
Sbjct: 284 WSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMI 343

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           R G++ ++    + IDMYAKCG I  + ++F ++ ++++ +W++M+ G+G HG   EA+ 
Sbjct: 344 RNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALN 403

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLL 460
           LF EM      P+ + F++VL+ACSH+G ++EG  +FKSM+ DY + P +E Y C+VDLL
Sbjct: 404 LFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSRDYGITPVEEHYACMVDLL 463

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520
           GRAG++ EA   I +MP +P  S WG LLGAC+ HR   L +  A ++L L+ +  G Y+
Sbjct: 464 GRAGKIDEALSFINNMPTEPGASAWGALLGACRIHRRAELAEEVAKKLLPLESDQSGVYV 523

Query: 521 ILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYG 580
           +LSNIYA  G WE   K R  M   G  K VG + IE+ +K+  F + D+       +  
Sbjct: 524 MLSNIYADVGMWEMVKKTRLKMCEKGIHKIVGFTSIEIEEKLYLFSSEDRFAYKNTQIES 583

Query: 581 VLEMLIRHMNETAYEPDIDCLIHDLEGET 609
           +   L   M E  Y PD+  ++HD++ E 
Sbjct: 584 LWNSLKERMRELGYVPDLRFVLHDVDDEV 612



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 195/369 (52%), Gaps = 5/369 (1%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           +G   +A  L+  Y + G +EEA  +F+E+P ++ V W VMI G+ +F+     + +F  
Sbjct: 145 EGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEFGVFELFSR 204

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG-LEGSIYVENSLMDVYATCC 161
           M R+    + F +  +++AC  + +       HG+ IK+  ++ + +++ SL+D+Y  C 
Sbjct: 205 MRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCG 264

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
             +D A  +F ++ +++ V W+ +I G+A +G     + +F++ML + V  N  +F+  V
Sbjct: 265 F-LDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIV 323

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
            AC+S G +  G+ +H  +I++G   ++    S +DMY +  C+  A + F ++ EK++ 
Sbjct: 324 LACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVF 383

Query: 282 TWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           +W+T+I G+   G  +E LN+F +M+S    PN  TF S+++AC+    +  G      +
Sbjct: 384 SWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSM 443

Query: 341 VR-RGLDGNLALANALIDMYAKCGNISDSQKIFSEM-SDRDLVTWTSMMIGYGAHGHGKE 398
            R  G+         ++D+  + G I ++    + M ++     W +++     H   + 
Sbjct: 444 SRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGALLGACRIHRRAEL 503

Query: 399 AIELFDEMV 407
           A E+  +++
Sbjct: 504 AEEVAKKLL 512



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 123/258 (47%), Gaps = 3/258 (1%)

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS 295
           ++A ++ +    +L     I   Y +   L  A++ F+ +T ++L +WNTI+A + K+  
Sbjct: 34  LNAQILVNALHRSLLFGPMIFGAYIQLGSLHVASKAFNHITFENLHSWNTILASHSKNKC 93

Query: 296 -SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
             + L +F +M  E    + F     + AC  L+     +  H+  ++  L+G+  +A A
Sbjct: 94  FYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLFQGAKLFHSLAIKLRLEGDPYVAPA 153

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
           L+++Y + G++ ++ K+F E+  ++ V W  M+ G+          ELF  M +SG   D
Sbjct: 154 LMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEFGVFELFSRMRRSGFELD 213

Query: 415 RIVFMAVLTACSHAGLVDEGLKYFKSMNDYN-VNPNKEIYGCVVDLLGRAGRVKEAYELI 473
             V   ++ AC +     EG  +       N ++ N  +   +VD+  + G +  A +L 
Sbjct: 214 PFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLF 273

Query: 474 KSMPFKPDESVWGPLLGA 491
           + + ++ D  VW  ++  
Sbjct: 274 EEISYR-DVVVWSAIIAG 290



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 83/175 (47%), Gaps = 6/175 (3%)

Query: 316 TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEM 375
           T  S+     TLA+     Q++A I+   L  +L     +   Y + G++  + K F+ +
Sbjct: 17  TLLSLFRFTKTLAS---NHQLNAQILVNALHRSLLFGPMIFGAYIQLGSLHVASKAFNHI 73

Query: 376 SDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGL 435
           +  +L +W +++  +  +    + ++LF  M+K G   D    +  + AC    L  +G 
Sbjct: 74  TFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLF-QGA 132

Query: 436 KYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           K F S+     +  +  +   ++++    G ++EA+++ + +P K +  +WG ++
Sbjct: 133 KLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLK-NSVIWGVMI 186


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 202/635 (31%), Positives = 334/635 (52%), Gaps = 46/635 (7%)

Query: 18  IPPI--IKQSLQSV----KKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDE 71
           +PP   I  S QS     + +S +  P +    PS L   L+K+  + G    A+ LFD 
Sbjct: 32  LPPFFSITHSTQSSSIWKQLTSTKVAPSVPTNIPSHLGLRLLKAALNVGDFRRAQQLFDN 91

Query: 72  MPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNA 131
           +P+ D  + + +I+ +T+    N+A  ++  +    + P+     +V KAC      S  
Sbjct: 92  IPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVAKACGASGDASRV 151

Query: 132 ALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNARLVFNDMKWKNDVSWTTLITGYA 190
             VH  AI+ G+    ++ N+L+  Y  C C+  + AR VF+D+  K+ VSWT++ + Y 
Sbjct: 152 KEVHDDAIRCGMMSDAFLGNALIHAYGKCKCV--EGARRVFDDLVVKDVVSWTSMSSCYV 209

Query: 191 HSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLP 250
           + G    GL VF EM   GV+ N  + S  + AC+    +  G+ IH   ++HG   N+ 
Sbjct: 210 NCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVF 269

Query: 251 VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-------------------- 290
           V ++++ +Y R   +  A   FD M  +D+++WN ++  Y                    
Sbjct: 270 VCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKG 329

Query: 291 ----------------EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334
                           E   + + + M  KM++  F PN  T +S + AC+ L +L  G+
Sbjct: 330 VEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSILESLRMGK 389

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
           +VH  + R  L G+L    AL+ MYAKCG+++ S+ +F  +  +D+V W +M+I    HG
Sbjct: 390 EVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTMIIANAMHG 449

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIY 453
           +G+E + LF+ M++SG++P+ + F  VL+ CSH+ LV+EGL+ F SM  D+ V P+   Y
Sbjct: 450 NGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDANHY 509

Query: 454 GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513
            C+VD+  RAGR+ EAYE I+ MP +P  S WG LLGAC+ ++   L K++A ++ +++P
Sbjct: 510 ACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACRVYKNVELAKISANKLFEIEP 569

Query: 514 NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGS 573
           N  G Y+ L NI      W E ++ R +M+  G  K  G SW++V D+V  F+  DK   
Sbjct: 570 NNPGNYVSLFNILVTAKLWSEASEARILMKERGITKTPGCSWLQVGDRVHTFVVGDKNNM 629

Query: 574 HTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
            +  +Y  L+ L   M    Y+PD D ++ D++ E
Sbjct: 630 ESDKIYNFLDELGEKMKSAGYKPDTDYVLQDIDQE 664


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 194/555 (34%), Positives = 326/555 (58%), Gaps = 14/555 (2%)

Query: 67  TLFDEMPER-DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGM 125
           TLF++  +R DV SW  +IA         ++   F  M + ++ PN  T    +K+C  +
Sbjct: 36  TLFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSAL 95

Query: 126 KSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTL 185
             L++    H  A+  G E  ++V ++L+D+Y+ C   + NAR++F+++  +N V+WT+L
Sbjct: 96  FDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCG-KLSNARVLFDEIPRRNIVTWTSL 154

Query: 186 ITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV---------RACASTGWVSFGKLI 236
           ITGY  + + +  L VFKE L E  E N      +V          AC+     +  + +
Sbjct: 155 ITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGV 214

Query: 237 HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-S 295
           H   IK G    + V N++LD Y +   +S + + FD+M EKD+++WN++IA Y ++G S
Sbjct: 215 HGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLS 274

Query: 296 SECLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
           ++   +F  M K+     N  T ++++ ACA   AL  G  +H  +++ G   N+ +A +
Sbjct: 275 TDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATS 334

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
           +IDMY KCG    ++  F  M ++++ +WT+M+ GYG HG  +EA+++F +M+ +GV+P+
Sbjct: 335 IIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPN 394

Query: 415 RIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELI 473
            I F++VL ACSHAG ++EG ++F +M ++YNV P  E YGC+VDLLGRAG +KEAY LI
Sbjct: 395 YITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLI 454

Query: 474 KSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWE 533
           KSM  + D  +WG LL AC+ H+   L +++A  +  L P+  G Y++L+NIYA  G+W+
Sbjct: 455 KSMKVRRDFVLWGSLLAACRIHKDVELAEISARELFKLDPSNCGYYVLLANIYADAGRWK 514

Query: 534 EFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETA 593
           +  + R +++  G  K  G S +E++ +V  F+  DK     + +Y  LE L   + E  
Sbjct: 515 DVERMRILVKDRGLVKPPGYSLVELKGRVHVFLVGDKEHPQHEKIYKYLEELSVKLQEAG 574

Query: 594 YEPDIDCLIHDLEGE 608
           Y P++  ++HD++ E
Sbjct: 575 YVPNMASVLHDVDEE 589



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/359 (32%), Positives = 186/359 (51%), Gaps = 14/359 (3%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +++ LI  Y   G +  AR LFDE+P R++V+WT +I GY   +  ++A  VF E +  +
Sbjct: 119 VSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEK 178

Query: 108 VNPN---------AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA 158
              N         +  + SVL AC  + + + +  VHG+AIK GL+  + VEN+L+D YA
Sbjct: 179 SEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYA 238

Query: 159 TCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSF 217
            C   +  +R VF+DM  K+ VSW ++I  YA +G       VF  ML   G + N  + 
Sbjct: 239 KCG-EVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTL 297

Query: 218 SIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE 277
           S  + ACA  G +  G  +H  VIK G+ +N+ +  SI+DMYC+      A   FD M E
Sbjct: 298 STLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKE 357

Query: 278 KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG-QQ 335
           K++ +W  +IAGY   G + E L++F +M      PN  TF S++AAC+    L  G + 
Sbjct: 358 KNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRW 417

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAH 393
            +A      ++  +     ++D+  + G I ++  +   M   RD V W S++     H
Sbjct: 418 FNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIH 476



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 52/103 (50%), Gaps = 5/103 (4%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I+AT++I  Y   G  E AR  FD M E++V SWT MIAGY       +A  VF +M+  
Sbjct: 330 IMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWA 389

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNA-----ALVHGMAIKEGLE 144
            V PN  T  SVL AC     L        A+ H   ++ G+E
Sbjct: 390 GVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVE 432


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 202/587 (34%), Positives = 330/587 (56%), Gaps = 32/587 (5%)

Query: 52   LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
            L+  Y   G + +A+ LF     +D+VSW  +I+  +  +   +A      M+ + V P+
Sbjct: 474  LVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPD 533

Query: 112  AFTLSSVLKACKGMKSLSNAALVHGMAIKEG--LEGSIYVENSLMDVYATCCISMDNARL 169
              TL+SVL AC  ++ L     +H  A++ G  +E S +V  +L+D+Y  C       RL
Sbjct: 534  GVTLASVLPACSQLERLRIGREIHCYALRNGDLIENS-FVGTALVDMYCNC-KQPKKGRL 591

Query: 170  VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG-VEMNPYSFSIAVRACASTG 228
            VF+ +  +    W  L+ GYA +      L +F EM+ E     N  +F+  + AC    
Sbjct: 592  VFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCK 651

Query: 229  WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
              S  + IH  ++K GFG +  V N+++DMY R   +  +   F  M ++D+++WNT+I 
Sbjct: 652  VFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMIT 711

Query: 289  GYEKSGS-SECLNMFSKMKSER------------------FSPNCFTFTSIIAACATLAA 329
            G    G   + LN+  +M+  +                  F PN  T  +++  CA LAA
Sbjct: 712  GCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAA 771

Query: 330  LSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIG 389
            L  G+++HA  V++ L  ++A+ +AL+DMYAKCG ++ + ++F +M  R+++TW  +++ 
Sbjct: 772  LGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMA 831

Query: 390  YGAHGHGKEAIELFDEMVKSG------VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN- 442
            YG HG G+EA+ELF  M   G      +RP+ + ++A+  ACSH+G+VDEGL  F +M  
Sbjct: 832  YGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKA 891

Query: 443  DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDE-SVWGPLLGACKEHRLPNLG 501
             + V P  + Y C+VDLLGR+GRVKEAYELI +MP   ++   W  LLGAC+ H+    G
Sbjct: 892  SHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVEFG 951

Query: 502  KLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDK 561
            ++AA  +  L+PN+   Y+++SNIY++ G W++    RK M+ MG +KE G SWIE  D+
Sbjct: 952  EIAAKHLFVLEPNVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIEHGDE 1011

Query: 562  VCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
            V  F++ D     ++ ++  LE L + M +  Y PDI C++H+++ E
Sbjct: 1012 VHKFLSGDASHPQSKELHEYLETLSQRMRKEGYVPDISCVLHNVDDE 1058



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 154/594 (25%), Positives = 261/594 (43%), Gaps = 70/594 (11%)

Query: 42  PKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFV 101
           P     +A +L+  Y   G +  AR +FD++P+RD VSW  MIA    F     +  +F 
Sbjct: 363 PPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFR 422

Query: 102 EMVRNEVNPNAFTLSSVLKACKGMK-SLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
            M+   V+P +FTL SV  AC  ++  +     VH   ++ G +   Y  N+L+ +YA  
Sbjct: 423 LMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNG-DLRTYTNNALVTMYARL 481

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
              +++A+ +F     K+ VSW T+I+  + +      L     M+++GV  +  + +  
Sbjct: 482 G-RVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASV 540

Query: 221 VRACASTGWVSFGKLIHAAVIKHG-FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
           + AC+    +  G+ IH   +++G    N  V  +++DMYC           FD +  + 
Sbjct: 541 LPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRT 600

Query: 280 LITWNTIIAGYEKSG-SSECLNMFSKMKSE-RFSPNCFTFTSIIAACATLAALSCGQQVH 337
           +  WN ++AGY ++    + L +F +M SE  F PN  TF S++ AC      S  + +H
Sbjct: 601 VAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIH 660

Query: 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
             IV+RG   +  + NAL+DMY++ G +  S+ IF  M+ RD+V+W +M+ G    G   
Sbjct: 661 GYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYD 720

Query: 398 EAIELFDEMVK----------------SGV--RPDRIVFMAVLTACSHAGLVDEGLKYFK 439
           +A+ L  EM +                 GV  +P+ +  M VL  C+    + +G +   
Sbjct: 721 DALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIHA 780

Query: 440 SMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN 499
                 +  +  +   +VD+  + G +  A  +   MP +                    
Sbjct: 781 YAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIR-------------------- 820

Query: 500 LGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMR-GMGSKKEVGMSWIEV 558
                         N++ T+ +L   Y   GK EE  +  +IM  G GS +EV      +
Sbjct: 821 --------------NVI-TWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREV------I 859

Query: 559 RDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDID---CLIHDLEGET 609
           R     +IA     SH+  V   L +          EP  D   CL+ DL G +
Sbjct: 860 RPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPRGDHYACLV-DLLGRS 912



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 110/425 (25%), Positives = 190/425 (44%), Gaps = 9/425 (2%)

Query: 74  ERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAAL 133
            R    W  ++   T  +    A + +  M+     P+ F   +VLKA   +  L     
Sbjct: 292 RRSPSQWIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQ 351

Query: 134 VHGMAIKEG--LEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAH 191
           +H    K G     S+ V NSL+++Y  C   +  AR VF+D+  ++ VSW ++I     
Sbjct: 352 IHAHVFKFGHAPPSSVAVANSLVNMYGKCG-DLTAARQVFDDIPDRDHVSWNSMIATLCR 410

Query: 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST-GWVSFGKLIHAAVIKHGFGSNLP 250
                  L +F+ ML E V+   ++      AC+   G V  GK +HA  +++G      
Sbjct: 411 FEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNG-DLRTY 469

Query: 251 VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSER 309
             N+++ MY R   ++DA   F     KDL++WNT+I+   ++    E L     M  + 
Sbjct: 470 TNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDG 529

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG-LDGNLALANALIDMYAKCGNISDS 368
             P+  T  S++ AC+ L  L  G+++H   +R G L  N  +  AL+DMY  C      
Sbjct: 530 VRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKG 589

Query: 369 QKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV-KSGVRPDRIVFMAVLTACSH 427
           + +F  +  R +  W +++ GY  +    +A+ LF EM+ +S   P+   F +VL AC  
Sbjct: 590 RLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVR 649

Query: 428 AGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGP 487
             +  +       +       +K +   ++D+  R GRV+ +  +   M  K D   W  
Sbjct: 650 CKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMN-KRDIVSWNT 708

Query: 488 LLGAC 492
           ++  C
Sbjct: 709 MITGC 713


>gi|125525985|gb|EAY74099.1| hypothetical protein OsI_01984 [Oryza sativa Indica Group]
          Length = 735

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 189/548 (34%), Positives = 312/548 (56%), Gaps = 4/548 (0%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN-EV 108
           T+L+  Y   G++ +AR +FD MP+R+  SW+ M+AGY +  C  +A+ +F  M+     
Sbjct: 157 TSLLNMYCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPS 216

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
             + F  ++VL A      L     +HG+ +K+GL   + VENSL+ +YA     M  A 
Sbjct: 217 EKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGC-MGAAF 275

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            VF   + +N ++W+ +ITGYA +G     + +F +M   G     ++F   + A +  G
Sbjct: 276 HVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLG 335

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            ++ GK  H  ++K GF   + V ++++DMY +  C++DA + FD++ E D++ W  +++
Sbjct: 336 ALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVS 395

Query: 289 GYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           G+ ++G   E L ++++M  E   P+  T  S + ACA +AAL  G+Q+H  IV+ GL  
Sbjct: 396 GHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGL 455

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
              + +AL  MY+KCGN+ D   +F  + DRD++ W S++ G+  +G G  A++LF+EM 
Sbjct: 456 GAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMK 515

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRV 466
             G  PD I F+ +L ACSH GLVD G +YF  M  DY + P  + Y C+VD+L RAG +
Sbjct: 516 MEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACMVDILSRAGML 575

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
           KEA + I+S+       +W  +LGAC+  R  ++G  A  R+++L       YI+LSNIY
Sbjct: 576 KEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTRDSSAYILLSNIY 635

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           A++ KW +  + R +MR  G  K+ G SW+E+  +V  F+  ++     + +   L  L 
Sbjct: 636 ASQRKWNDVERVRHLMRLRGVNKDPGCSWVELNSRVHVFVVGEQQHPEAENINAQLRRLA 695

Query: 587 RHMNETAY 594
           +HM +  Y
Sbjct: 696 KHMKDEGY 703



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 178/363 (49%), Gaps = 9/363 (2%)

Query: 134 VHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL-VFNDMK--WKNDVSWTTLITGYA 190
           +H  A+K G      V NSL++ Y++    +  A   VF+D+    ++  SW +L+   +
Sbjct: 34  LHAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAARDVASWNSLLNPLS 93

Query: 191 HSGNGYGGLGVFKEMLLEGVEM-NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFG-SN 248
                   L  F+ ML     + +P+SF+ A  A A       G   HA   K     SN
Sbjct: 94  RH-RPLDALSRFRSMLSSSTVLPSPHSFAAAFTAAARAASAPAGTAAHALACKIPSAVSN 152

Query: 249 LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKS 307
           + V  S+L+MYC+   +SDA + FD M +++  +W+T++AGY  +  S E  ++F  M  
Sbjct: 153 VYVCTSLLNMYCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLE 212

Query: 308 ERFSPNC-FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNIS 366
           E  S    F  T++++A +    L  G+Q+H  IV+ GL   +++ N+L+ MYAK G + 
Sbjct: 213 ECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMG 272

Query: 367 DSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS 426
            +  +F    +R+ +TW++M+ GY  +G    A+ +F +M  +G  P    F+ VL A S
Sbjct: 273 AAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASS 332

Query: 427 HAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWG 486
             G +  G +    M          +   +VD+  + G + +A E    + ++ D  +W 
Sbjct: 333 DLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQL-YEVDIVLWT 391

Query: 487 PLL 489
            ++
Sbjct: 392 AMV 394



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 123/261 (47%), Gaps = 29/261 (11%)

Query: 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRF--DCLSDANQYFDEM--TEKDLITWNTIIA 288
           G+ +HA  +K G  S+ PV NS+++ Y       L+ A   FD++    +D+ +WN+++ 
Sbjct: 31  GEALHAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAARDVASWNSLLN 90

Query: 289 GYEKSGSSECLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR-RGLD 346
              +    + L+ F  M  S    P+  +F +   A A  A+   G   HA   +     
Sbjct: 91  PLSRHRPLDALSRFRSMLSSSTVLPSPHSFAAAFTAAARAASAPAGTAAHALACKIPSAV 150

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            N+ +  +L++MY K G +SD++++F  M  R+  +W++M+ GY A    +EA +LF  M
Sbjct: 151 SNVYVCTSLLNMYCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLM 210

Query: 407 VKS-GVRPDRIVFMAVLTACS-----------HAGLVDEGLKYFKSMNDYNVNPNKEIYG 454
           ++         V  AVL+A S           H  +V +GL  F S+ +           
Sbjct: 211 LEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVEN----------- 259

Query: 455 CVVDLLGRAGRVKEAYELIKS 475
            +V +  +AG +  A+ + +S
Sbjct: 260 SLVTMYAKAGCMGAAFHVFES 280


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 201/565 (35%), Positives = 313/565 (55%), Gaps = 3/565 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + L   +++  F+ G    +  + D+  E ++  +  MI G    +C  ++  ++  M +
Sbjct: 42  TYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVLNDCFQESIEIYHSMRK 101

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             ++P++FT   VLKAC  +        +H + +K G E   +V+ SL+++Y  C   +D
Sbjct: 102 EGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVKISLINLYTKCGF-ID 160

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           NA  VF+D+  KN  SWT  I+GY   G     + +F+ +L  G+  + +S    + AC 
Sbjct: 161 NAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACK 220

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
            TG +  G+ I   + ++G   N+ V  +++D Y +   +  A   FD M EK++++W++
Sbjct: 221 RTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSS 280

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I GY  +G   E L++F KM +E   P+C+    ++ +CA L AL  G      I    
Sbjct: 281 MIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNE 340

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
              N  L  ALIDMYAKCG +  + ++F  M  +D V W + + G    GH K+A+ LF 
Sbjct: 341 FLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFG 400

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRA 463
           +M KSG++PDR  F+ +L AC+HAGLV+EG +YF SM   + + P  E YGC+VDLLGRA
Sbjct: 401 QMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRA 460

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G + EA++LIKSMP + +  VWG LLG C+ HR   L ++   +++ L+P   G Y++LS
Sbjct: 461 GCLDEAHQLIKSMPMEANAIVWGALLGGCRLHRDTQLVEVVLKKLIALEPWHSGNYVLLS 520

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           NIYAA  KWEE AK R IM   G KK  G SWIEV   V  F+  D     ++ +Y  L 
Sbjct: 521 NIYAASHKWEEAAKIRSIMSERGVKKIPGYSWIEVDGVVHQFLVGDTSHPLSEKIYAKLG 580

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGE 608
            L + +    Y P  D ++ D+E E
Sbjct: 581 ELAKDLKAAGYVPTTDHVLFDIEEE 605



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 71/146 (48%)

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
           + +HA ++R GLD +  L N ++      GN + S +I  +  + ++  + +M+ G   +
Sbjct: 27  KHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVLN 86

Query: 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIY 453
              +E+IE++  M K G+ PD   F  VL AC+     + G+K    +       +  + 
Sbjct: 87  DCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVK 146

Query: 454 GCVVDLLGRAGRVKEAYELIKSMPFK 479
             +++L  + G +  A+++   +P K
Sbjct: 147 ISLINLYTKCGFIDNAFKVFDDIPDK 172


>gi|297604972|ref|NP_001056430.2| Os05g0581300 [Oryza sativa Japonica Group]
 gi|255676606|dbj|BAF18344.2| Os05g0581300 [Oryza sativa Japonica Group]
          Length = 704

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 218/606 (35%), Positives = 326/606 (53%), Gaps = 34/606 (5%)

Query: 5   RLLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEE 64
           R L +AA+ H             +V+ S++ S           +AT L   Y   G +  
Sbjct: 87  RFLPHAASLHAF-----------AVRSSAVSS---------VFVATALADVYAKAGCLGL 126

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           A  +FDEMP ++VVSWT ++A  T     ++A   F EM  + V+ +++  ++ L AC  
Sbjct: 127 ALKVFDEMPHKNVVSWTTLVASLTRAGRRHEALRRFSEMRASGVHCDSYAYAAALTACAD 186

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTT 184
              LS    VH    K GL+ + YV N+L  +YA C   +D A    + M  ++  +WTT
Sbjct: 187 AGLLSRGREVHAFCAKLGLDSTPYVANTLATLYARCS-DVDRALAAVSRMGTRDVAAWTT 245

Query: 185 LITGYAHSGNGYGGLGVFKEMLLE----GVEMNPYSFSIAVRACASTGWVSFGKLIHAAV 240
           +I+ Y  +G     +  F  ML E        N Y+++  + ACA   WV  G+ +HA  
Sbjct: 246 VISAYVQTGRAKEAIEAFVRMLREESSVAASPNEYTYAAVIAACADIAWVCLGEQLHAQA 305

Query: 241 IKHGFGSNLPVMNSILDMYCRF-DCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-C 298
            + GF     V NS++ +Y R   CLS A+  F E   KD+++W+ II+GY + G +E  
Sbjct: 306 ARKGFACARSVANSLVTLYTRAAGCLSAADAVFRESVVKDVVSWSAIISGYAQEGLAEDA 365

Query: 299 LNMFSKMKSERF--SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALI 356
             +F +M+       PN FT  S+++ CAT A+L  G+Q+H   V  GL+ +  + +ALI
Sbjct: 366 FALFREMRHHSGCPRPNEFTLASLLSVCATAASLDAGRQLHTLAVAAGLEHHAMIRSALI 425

Query: 357 DMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI 416
           DMY K G++ D+  +FS     D+V+WT+M++GY  HGH K+A+ELF EM   G++PD +
Sbjct: 426 DMYGKSGSMLDADIVFSHRVKDDVVSWTAMIVGYAEHGHSKKALELFQEMCHVGLKPDHV 485

Query: 417 VFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELI-K 474
            F+ VL AC HAG V+ GL+Y   MN  Y + P KE YGCVVDLLGRAGR+ EA ELI K
Sbjct: 486 TFIGVLNACCHAGEVELGLRYLNEMNQIYGLYPAKEHYGCVVDLLGRAGRINEAEELIGK 545

Query: 475 SMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEE 534
               + D  VW  LL AC        GK AA R ++ +P   G ++ ++N+YA++G+W E
Sbjct: 546 IAANERDGVVWTSLLRACAARGEEETGKKAAERAMEAEPWGAGAHVAMANLYASKGQWHE 605

Query: 535 FAKFRKIMRGMGSKKEVGMSWIEV---RDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNE 591
            A+ R +M+  G  K  G S I V     +V  F+A+D+       +Y +LE++      
Sbjct: 606 AAQERHMMKQKGVVKGAGWSSITVGGEGRRVGVFVASDRTHPQDSAIYRMLELIYFGTGM 665

Query: 592 TAYEPD 597
             Y PD
Sbjct: 666 ARYVPD 671



 Score =  205 bits (522), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 139/459 (30%), Positives = 235/459 (51%), Gaps = 20/459 (4%)

Query: 53  IKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNA 112
           +K       + +A  LFD MP RD V++  ++AG+ +      A  +F  + R    P A
Sbjct: 8   LKQLARSSRLADAHRLFDGMPRRDEVAYATLLAGHAAAGDFPGAMALFSRL-RASSPPLA 66

Query: 113 ----FTLSSVLKACKG---MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISM 164
               F LS V K+C      + L +AA +H  A++     S++V  +L DVYA   C+ +
Sbjct: 67  PADPFVLSLVFKSCAAAADARFLPHAASLHAFAVRSSAVSSVFVATALADVYAKAGCLGL 126

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
             A  VF++M  KN VSWTTL+     +G  +  L  F EM   GV  + Y+++ A+ AC
Sbjct: 127 --ALKVFDEMPHKNVVSWTTLVASLTRAGRRHEALRRFSEMRASGVHCDSYAYAAALTAC 184

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           A  G +S G+ +HA   K G  S   V N++  +Y R   +  A      M  +D+  W 
Sbjct: 185 ADAGLLSRGREVHAFCAKLGLDSTPYVANTLATLYARCSDVDRALAAVSRMGTRDVAAWT 244

Query: 285 TIIAGYEKSG-SSECLNMFSKMKSER----FSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           T+I+ Y ++G + E +  F +M  E      SPN +T+ ++IAACA +A +  G+Q+HA 
Sbjct: 245 TVISAYVQTGRAKEAIEAFVRMLREESSVAASPNEYTYAAVIAACADIAWVCLGEQLHAQ 304

Query: 340 IVRRGLDGNLALANALIDMYAK-CGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
             R+G     ++AN+L+ +Y +  G +S +  +F E   +D+V+W++++ GY   G  ++
Sbjct: 305 AARKGFACARSVANSLVTLYTRAAGCLSAADAVFRESVVKDVVSWSAIISGYAQEGLAED 364

Query: 399 AIELFDEMV-KSGV-RPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCV 456
           A  LF EM   SG  RP+     ++L+ C+ A  +D G +         +  +  I   +
Sbjct: 365 AFALFREMRHHSGCPRPNEFTLASLLSVCATAASLDAGRQLHTLAVAAGLEHHAMIRSAL 424

Query: 457 VDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           +D+ G++G + +A +++ S   K D   W  ++    EH
Sbjct: 425 IDMYGKSGSMLDA-DIVFSHRVKDDVVSWTAMIVGYAEH 462


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 199/563 (35%), Positives = 311/563 (55%), Gaps = 2/563 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            L T L+    + G I  AR LFDE    DV  W  +I  Y+  N +     ++  M   
Sbjct: 89  FLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWT 148

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V+P+ FT   VLKAC  +     + ++HG  IK G    ++V+N L+ +YA C   +  
Sbjct: 149 GVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCG-HIGV 207

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A++VF+ +  +  VSWT++I+GYA +G     L +F +M   GV+ +  +    +RA   
Sbjct: 208 AKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTD 267

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  G+ IH  VIK G      ++ S+   Y +   ++ A  +FD+M   ++I WN +
Sbjct: 268 VDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAM 327

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+GY K+G + E +N+F  M S    P+  T  S + A A + +L   Q +   + +   
Sbjct: 328 ISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNY 387

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             ++ +  +LIDMYAKCG++  ++++F   SD+D+V W++M++GYG HG G EAI L+  
Sbjct: 388 GSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHV 447

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M ++GV P+ + F+ +LTAC+H+GLV EG + F  M D+ + P  E Y CVVDLLGRAG 
Sbjct: 448 MKQAGVFPNDVTFIGLLTACNHSGLVKEGWELFHCMKDFEIVPRNEHYSCVVDLLGRAGY 507

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           + EA   I  +P +P  SVWG LL ACK +R   LG+ AA ++  L P   G Y+ LSN+
Sbjct: 508 LGEACAFIMKIPIEPGVSVWGALLSACKIYRCVTLGEYAANKLFSLDPYNTGHYVQLSNL 567

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           YA+   W+  A  R +MR  G  K++G S IE+  K+  F   DK     + ++  L+ L
Sbjct: 568 YASSCLWDCVAHVRVLMREKGLNKDLGYSVIEINGKLQAFHVGDKSHPMAKEIFDELQRL 627

Query: 586 IRHMNETAYEPDIDCLIHDLEGE 608
            R + E  + P  + ++HDL  E
Sbjct: 628 ERRLKEVGFVPYTESVLHDLNYE 650



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 104/200 (52%), Gaps = 1/200 (0%)

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG- 294
           IH  ++  G   N  +M  +++       +  A + FDE    D+  WN II  Y ++  
Sbjct: 75  IHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNNM 134

Query: 295 SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
             + + M+  M+     P+ FTF  ++ AC  L        +H  I++ G   ++ + N 
Sbjct: 135 YRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQNG 194

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
           L+ +YAKCG+I  ++ +F  +  R +V+WTS++ GY  +G   EA+ +F +M  +GV+PD
Sbjct: 195 LVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPD 254

Query: 415 RIVFMAVLTACSHAGLVDEG 434
            I  +++L A +    +++G
Sbjct: 255 WIALVSILRAYTDVDDLEQG 274



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 2/101 (1%)

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
           Q+H  +V  GL  N  L   L++  +  G I  ++K+F E    D+  W +++  Y  + 
Sbjct: 74  QIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNN 133

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGL 435
             ++ +E++  M  +GV PD   F  VL AC+   L+D GL
Sbjct: 134 MYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTE--LLDFGL 172


>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1134

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 194/552 (35%), Positives = 319/552 (57%), Gaps = 8/552 (1%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           A  +FD MPER+VVSWT +++G+      N + ++F EM R  + PN FT S+ LKAC  
Sbjct: 423 AYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEMGRQGIYPNEFTFSTNLKACGL 482

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTT 184
           + +L     +HG  +K G E  + V NSL+D+Y+ C   ++ A  VF  M  ++ +SW  
Sbjct: 483 LNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCG-RINEAEKVFRWMVGRSLISWNA 541

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA--VRACASTGWVSFGKLIHAAVIK 242
           +I GY H+G G   L  F  M    ++  P  F++   ++AC+STG +  GK IH  +++
Sbjct: 542 MIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVR 601

Query: 243 HGFG--SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECL 299
            GF   S+  +  S++D+Y +   L  A + FD++ EK +I+W+++I GY + G   E +
Sbjct: 602 SGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKEKTMISWSSLILGYAQEGDFVEAM 661

Query: 300 NMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMY 359
            +F +++      + F  +SII   A  A L  G+Q+ A +V+       +++N+L+DMY
Sbjct: 662 GLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGKQMQALVVKLPSGLETSVSNSLVDMY 721

Query: 360 AKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFM 419
            KCG + +++K F+EM  +D+++WT M+ GYG HG GK+A+ +F++M++  + PD + ++
Sbjct: 722 LKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKHGLGKKAVSIFNKMLRHNIEPDEVCYL 781

Query: 420 AVLTACSHAGLVDEGLKYF-KSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPF 478
           AVL+ACSH+G++ EG + F K +    + P  E Y CVVDLLGRAGR+KEA  L+ +MP 
Sbjct: 782 AVLSACSHSGMIKEGEELFSKLLETQGIKPRVEHYACVVDLLGRAGRLKEAKHLVDTMPI 841

Query: 479 KPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKF 538
           KP+  +W  LL  C+ H    LGK     +L +       Y+++SN+Y   G W E    
Sbjct: 842 KPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDGKNPANYVMMSNLYGQAGYWNEQGNA 901

Query: 539 RKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNET-AYEPD 597
           R++    G +KE GMSW+E+  +V  F + +     T  +   L+ + R + E   Y   
Sbjct: 902 RELGSIKGLQKEAGMSWVEIEREVHFFRSGEDSHPLTLVIQETLKEVERRLREELGYVYG 961

Query: 598 IDCLIHDLEGET 609
           +   +HD++ E+
Sbjct: 962 LKHELHDIDDES 973



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 188/374 (50%), Gaps = 12/374 (3%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +  +L+  Y   G I EA  +F  M  R ++SW  MIAGY      ++A   F  M   +
Sbjct: 507 VGNSLVDMYSKCGRINEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAK 566

Query: 108 V--NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLE--GSIYVENSLMDVYATCCIS 163
           +   P+ FTL+S+LKAC     +     +HG  ++ G     S  +  SL+D+Y  C  +
Sbjct: 567 IKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCG-N 625

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           + +AR  F+ +K K  +SW++LI GYA  G+    +G+FK +     +++ +  S  +  
Sbjct: 626 LFSARKAFDQIKEKTMISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGV 685

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
            A    +  GK + A V+K   G    V NS++DMY +   + +A + F EM  KD+I+W
Sbjct: 686 FADFALLQQGKQMQALVVKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVISW 745

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
             +I GY K G   + +++F+KM      P+   + ++++AC+    +  G+++ + ++ 
Sbjct: 746 TVMITGYGKHGLGKKAVSIFNKMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLE 805

Query: 343 -RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLV-TWTSMMIGYGAHGHGKEAI 400
            +G+   +     ++D+  + G + +++ +   M  +  V  W +++     HG     I
Sbjct: 806 TQGIKPRVEHYACVVDLLGRAGRLKEAKHLVDTMPIKPNVGIWQTLLSLCRVHGD----I 861

Query: 401 ELFDEMVKSGVRPD 414
           EL  E+ K  +R D
Sbjct: 862 ELGKEVGKILLRID 875



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/239 (31%), Positives = 138/239 (57%), Gaps = 8/239 (3%)

Query: 244 GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMF 302
           G G NL   N ++DMYC+      A + FD M E+++++W  +++G+  +G  +  L++F
Sbjct: 399 GSGLNLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLF 458

Query: 303 SKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362
           ++M  +   PN FTF++ + AC  L AL  G Q+H   ++ G +  + + N+L+DMY+KC
Sbjct: 459 TEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKC 518

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV--RPDRIVFMA 420
           G I++++K+F  M  R L++W +M+ GY   G+G  A+  F  M ++ +  RPD     +
Sbjct: 519 GRINEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTS 578

Query: 421 VLTACSHAGLVDEG--LKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV---KEAYELIK 474
           +L ACS  G++  G  +  F   + ++   +  I G +VDL  + G +   ++A++ IK
Sbjct: 579 LLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIK 637



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 68/129 (52%)

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           NL  +N LIDMY KC     + K+F  M +R++V+WT++M G+  +G    ++ LF EM 
Sbjct: 403 NLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEMG 462

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
           + G+ P+   F   L AC     +++GL+              E+   +VD+  + GR+ 
Sbjct: 463 RQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRIN 522

Query: 468 EAYELIKSM 476
           EA ++ + M
Sbjct: 523 EAEKVFRWM 531



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 56/109 (51%), Gaps = 15/109 (13%)

Query: 40  LIPKGPSILATN----LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQ 95
           L+ K PS L T+    L+  Y   GL++EA   F EM  +DV+SWTVMI GY       +
Sbjct: 701 LVVKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKHGLGKK 760

Query: 96  AWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLE 144
           A ++F +M+R+ + P+     +VL AC            H   IKEG E
Sbjct: 761 AVSIFNKMLRHNIEPDEVCYLAVLSACS-----------HSGMIKEGEE 798


>gi|224090525|ref|XP_002309013.1| predicted protein [Populus trichocarpa]
 gi|222854989|gb|EEE92536.1| predicted protein [Populus trichocarpa]
          Length = 583

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 210/579 (36%), Positives = 326/579 (56%), Gaps = 15/579 (2%)

Query: 18  IPPIIKQSL-QSVKKSSIQSDPPL-------IPKGPSILATNLIKSYFDEGLIEEARTLF 69
           +P ++   + Q  K  +++   PL         +   I++ +++  Y     + EAR +F
Sbjct: 2   VPELVGSLIHQCSKTKALRQGLPLHAIAIKTATRSDVIVSNHILNLYAKCRKLREARQVF 61

Query: 70  DEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLS 129
           DEM ER++VSW+ MI+GY        A  +F ++    + PN +  +SV+ AC  +K L 
Sbjct: 62  DEMSERNLVSWSAMISGYEQIGEPISALGLFSKL---NIVPNEYVYASVISACASLKGLV 118

Query: 130 NAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGY 189
               +HG A+K GL+   +V N+L+ +Y  C    D A L +N+    N V++  LITG+
Sbjct: 119 QGKQIHGQALKFGLDSVSFVSNALITMYMKCGKCSD-ALLAYNEALELNPVAYNALITGF 177

Query: 190 AHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNL 249
             +     G  V + M  +G   + ++F   +  C S   +  G+L+H   IK    S  
Sbjct: 178 VENQQPDKGFEVLRMMYQDGFFPDRFTFVGLLGTCNSRDDLKRGELLHCQTIKLKLNSTA 237

Query: 250 PVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSE 308
            + N I+ MY + + L +A + F  + EKDLI+WNT I+        E  L  F +M +E
Sbjct: 238 FIGNLIITMYSKLNLLEEAEKAFRSIEEKDLISWNTFISSCSHCNDHEKALEAFKEMLNE 297

Query: 309 -RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISD 367
            R  P+ FTF S +AAC+ LA++  G+Q+H  ++R  L  ++   NALI+MYAKCG I+ 
Sbjct: 298 CRVRPDEFTFASALAACSGLASMCNGKQIHGHLIRTRLYQDVGAGNALINMYAKCGCIAK 357

Query: 368 SQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH 427
           +  IFS+M  ++LV+W +M+ G+G HG G +A ELF +M   GV+PD + F+ +LTA +H
Sbjct: 358 AYYIFSKMEHQNLVSWNTMIAGFGNHGFGGKAFELFAKMKTMGVKPDSVTFVGLLTASNH 417

Query: 428 AGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWG 486
           AGLVDEGL YF SM + Y ++P  E + C++DLLGRAGR+ EA E +K  PF  D  V G
Sbjct: 418 AGLVDEGLVYFNSMEETYGISPEIEHFSCLIDLLGRAGRLNEAKEYMKKFPFGHDTVVLG 477

Query: 487 PLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546
            LL AC+ H   + GK  A ++L L+P     Y++LSN+YA++  W+  A+  K+++G G
Sbjct: 478 SLLSACRLHGDVDTGKCFARQLLKLQPATTSPYVLLSNLYASDEMWDGVAEAWKLLKGSG 537

Query: 547 SKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
            KKE G S IEV      F   D   S  + +  +L++L
Sbjct: 538 LKKEPGHSLIEVNGTFEKFTVVDFSHSRIEEIMDMLKIL 576



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 144/282 (51%), Gaps = 5/282 (1%)

Query: 212 MNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQY 271
           M P      +  C+ T  +  G  +HA  IK    S++ V N IL++Y +   L +A Q 
Sbjct: 1   MVPELVGSLIHQCSKTKALRQGLPLHAIAIKTATRSDVIVSNHILNLYAKCRKLREARQV 60

Query: 272 FDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAAL 330
           FDEM+E++L++W+ +I+GYE+ G     L +FSK+      PN + + S+I+ACA+L  L
Sbjct: 61  FDEMSERNLVSWSAMISGYEQIGEPISALGLFSKLN---IVPNEYVYASVISACASLKGL 117

Query: 331 SCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY 390
             G+Q+H   ++ GLD    ++NALI MY KCG  SD+   ++E  + + V + +++ G+
Sbjct: 118 VQGKQIHGQALKFGLDSVSFVSNALITMYMKCGKCSDALLAYNEALELNPVAYNALITGF 177

Query: 391 GAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK 450
             +    +  E+   M + G  PDR  F+ +L  C+    +  G           +N   
Sbjct: 178 VENQQPDKGFEVLRMMYQDGFFPDRFTFVGLLGTCNSRDDLKRGELLHCQTIKLKLNSTA 237

Query: 451 EIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGAC 492
            I   ++ +  +   ++EA +  +S+  K D   W   + +C
Sbjct: 238 FIGNLIITMYSKLNLLEEAEKAFRSIEEK-DLISWNTFISSC 278


>gi|222635654|gb|EEE65786.1| hypothetical protein OsJ_21486 [Oryza sativa Japonica Group]
          Length = 749

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 197/559 (35%), Positives = 319/559 (57%), Gaps = 6/559 (1%)

Query: 43  KGPSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFV 101
           +G  ++  N L+  Y   GL+++   LF+ + ++D++SW  +IAG+       +A  VF 
Sbjct: 166 RGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFR 225

Query: 102 EM-VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
           EM V    +PN F   S  +AC  + S      +HG++IK  L+  +YV  SL D+YA C
Sbjct: 226 EMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARC 285

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
             ++D+AR+ F  ++  + VSW +++  Y+  G     L +F EM   G+  +  +    
Sbjct: 286 -KNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGL 344

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           + AC     +  G+LIH+ ++K G   ++ V NS+L MY R   LS A   F E+ ++D+
Sbjct: 345 LCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDV 404

Query: 281 ITWNTII-AGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           +TWN+I+ A  + +   E L +FS +     S +  +  ++++A A L      +QVHA 
Sbjct: 405 VTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAY 464

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEM-SDRDLVTWTSMMIGYGAHGHGKE 398
             + GL  +  L+N LID YAKCG++ D+ ++F  M ++RD+ +W+S+++GY   G+ KE
Sbjct: 465 AFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKE 524

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVV 457
           A +LF  M   G+RP+ + F+ VLTACS  G V+EG  Y+  M  +Y + P +E   C+V
Sbjct: 525 AFDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIMEPEYGIVPTREHCSCIV 584

Query: 458 DLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG 517
           DLL RAG++ EA   I  MPF+PD  +W  LL A K H    +GK AA  +L++ P+   
Sbjct: 585 DLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASKMHNDMEMGKRAAEGILNIDPSHSA 644

Query: 518 TYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQY 577
            Y++L NIYAA G W EFA+ +K MR  G KK  G SW++++ ++  FI  D+    ++ 
Sbjct: 645 AYVLLCNIYAASGNWNEFARLKKAMRTSGVKKSPGKSWVKLKGELKVFIVEDRSHPESEE 704

Query: 578 VYGVLEMLIRHMNETAYEP 596
           +Y +LE++   M +  Y P
Sbjct: 705 IYAMLELIGMEMIKAGYVP 723



 Score =  219 bits (557), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 140/491 (28%), Positives = 238/491 (48%), Gaps = 30/491 (6%)

Query: 32  SSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFN 91
           +S  S P     G ++L  +LI  Y                  R+ VSW  +IA +    
Sbjct: 72  ASSSSSPDAQLAGNTVLGNHLITMY-----------------GRNPVSWASVIAAHVQNG 114

Query: 92  CHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVEN 151
               A  +F  M+R+    + F L S ++AC  +  +     VH  A+K      + V+N
Sbjct: 115 RAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQN 174

Query: 152 SLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVE 211
           +L+ +Y+   + +D+  ++F  +K K+ +SW ++I G+A  G     L VF+EM++EG  
Sbjct: 175 ALVTMYSKNGL-VDDGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSH 233

Query: 212 M-NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQ 270
             N + F  A RAC + G   +G+ IH   IK+    +L V  S+ DMY R   L  A  
Sbjct: 234 HPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARV 293

Query: 271 YFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAA 329
            F  +   DL++WN+I+  Y   G  SE L +FS+M+     P+  T   ++ AC    A
Sbjct: 294 AFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDA 353

Query: 330 LSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIG 389
           L  G+ +H+ +V+ GLDG++++ N+L+ MYA+C ++S +  +F E+ D+D+VTW S++  
Sbjct: 354 LYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTA 413

Query: 390 YGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN 449
              H H +E ++LF  + KS    DRI    VL+A +  G  +   +         +  +
Sbjct: 414 CAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAGLVDD 473

Query: 450 KEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL------GACKEHRLPNLGKL 503
           + +   ++D   + G + +A  L + M    D   W  L+      G  KE         
Sbjct: 474 RMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKE----AFDLF 529

Query: 504 AALRVLDLKPN 514
           + +R L ++PN
Sbjct: 530 SRMRSLGIRPN 540



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 119/439 (27%), Positives = 204/439 (46%), Gaps = 38/439 (8%)

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEG-------LEGSIYVENSLMDVYATCCISMDNAR 168
           ++++ AC  ++SL     VH   +          L G+  + N L+ +Y           
Sbjct: 48  AALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYG---------- 97

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
                   +N VSW ++I  +  +G     LG+F  ML  G   + ++   AVRAC   G
Sbjct: 98  --------RNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELG 149

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            V  G+ +HA  +K   GS+L V N+++ MY +   + D    F+ + +KDLI+W +IIA
Sbjct: 150 DVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIA 209

Query: 289 GYEKSG-SSECLNMFSKMKSE-RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           G+ + G   E L +F +M  E    PN F F S   AC  + +   G+Q+H   ++  LD
Sbjct: 210 GFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLD 269

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            +L +  +L DMYA+C N+  ++  F  +   DLV+W S++  Y   G   EA+ LF EM
Sbjct: 270 RDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEM 329

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
             SG+RPD I    +L AC     +  G      +    ++ +  +   ++ +  R   +
Sbjct: 330 RDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDL 389

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDL----KPNMMGTYIIL 522
             A ++   +    D   W  +L AC +H  P       L++  L    +P++    I L
Sbjct: 390 SSAMDVFHEIK-DQDVVTWNSILTACAQHNHPE----EVLKLFSLLNKSEPSL--DRISL 442

Query: 523 SNIYAAEGKWEEFAKFRKI 541
           +N+ +A  +   F   +++
Sbjct: 443 NNVLSASAELGYFEMVKQV 461


>gi|14587213|dbj|BAB61147.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|125570436|gb|EAZ11951.1| hypothetical protein OsJ_01824 [Oryza sativa Japonica Group]
          Length = 735

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 189/548 (34%), Positives = 312/548 (56%), Gaps = 4/548 (0%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN-EV 108
           T+L+  Y   G++ +AR +FD MP+R+  SW+ M+AGY +  C  +A+ +F  M+     
Sbjct: 157 TSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPS 216

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
             + F  ++VL A      L     +HG+ +K+GL   + VENSL+ +YA     M  A 
Sbjct: 217 EKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGC-MGAAF 275

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            VF   + +N ++W+ +ITGYA +G     + +F +M   G     ++F   + A +  G
Sbjct: 276 HVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLG 335

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            ++ GK  H  ++K GF   + V ++++DMY +  C++DA + FD++ E D++ W  +++
Sbjct: 336 ALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVS 395

Query: 289 GYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           G+ ++G   E L ++++M  E   P+  T  S + ACA +AAL  G+Q+H  IV+ GL  
Sbjct: 396 GHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGL 455

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
              + +AL  MY+KCGN+ D   +F  + DRD++ W S++ G+  +G G  A++LF+EM 
Sbjct: 456 GAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMK 515

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRV 466
             G  PD I F+ +L ACSH GLVD G +YF  M  DY + P  + Y C+VD+L RAG +
Sbjct: 516 MEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACMVDILSRAGML 575

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
           KEA + I+S+       +W  +LGAC+  R  ++G  A  R+++L       YI+LSNIY
Sbjct: 576 KEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTGDSSAYILLSNIY 635

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           A++ KW +  + R +MR  G  K+ G SW+E+  +V  F+  ++     + +   L  L 
Sbjct: 636 ASQRKWNDVERVRHLMRLRGVNKDPGCSWVELNSRVHVFVVGEQQHPEAENINAQLRRLA 695

Query: 587 RHMNETAY 594
           +HM +  Y
Sbjct: 696 KHMKDEGY 703



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 178/363 (49%), Gaps = 9/363 (2%)

Query: 134 VHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL-VFNDM--KWKNDVSWTTLITGYA 190
           +H  A+K G      V NSL++ Y++    +  A   VF+D+    ++  SW +L+   +
Sbjct: 34  LHAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAARDVTSWNSLLNPLS 93

Query: 191 HSGNGYGGLGVFKEMLLEGVEM-NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFG-SN 248
                   L  F+ ML     + +P+SF+ A  A A       G   HA   K     SN
Sbjct: 94  -GHRPLDALSRFRSMLSSSTVLPSPHSFAAAFTAAARAASAPAGTAAHALACKIPSAVSN 152

Query: 249 LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKS 307
           + V  S+L+MYC+   +SDA + FD M +++  +W+T++AGY  +  S E  ++F  M  
Sbjct: 153 VYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLE 212

Query: 308 ERFSPNC-FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNIS 366
           E  S    F  T++++A +    L  G+Q+H  IV+ GL   +++ N+L+ MYAK G + 
Sbjct: 213 ECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMG 272

Query: 367 DSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS 426
            +  +F    +R+ +TW++M+ GY  +G    A+ +F +M  +G  P    F+ VL A S
Sbjct: 273 AAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASS 332

Query: 427 HAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWG 486
             G +  G +    M          +   +VD+  + G + +A E    + ++ D  +W 
Sbjct: 333 DLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQL-YEVDIVLWT 391

Query: 487 PLL 489
            ++
Sbjct: 392 AMV 394



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 122/261 (46%), Gaps = 29/261 (11%)

Query: 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRFD--CLSDANQYFDEM--TEKDLITWNTIIA 288
           G+ +HA  +K G  S+ PV NS+++ Y       L+ A   FD++    +D+ +WN+++ 
Sbjct: 31  GEALHAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAARDVTSWNSLLN 90

Query: 289 GYEKSGSSECLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR-RGLD 346
                   + L+ F  M  S    P+  +F +   A A  A+   G   HA   +     
Sbjct: 91  PLSGHRPLDALSRFRSMLSSSTVLPSPHSFAAAFTAAARAASAPAGTAAHALACKIPSAV 150

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            N+ +  +L++MY K G +SD++++F  M  R+  +W++M+ GY A    +EA +LF  M
Sbjct: 151 SNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLM 210

Query: 407 VKS-GVRPDRIVFMAVLTACS-----------HAGLVDEGLKYFKSMNDYNVNPNKEIYG 454
           ++         V  AVL+A S           H  +V +GL  F S+ +           
Sbjct: 211 LEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVEN----------- 259

Query: 455 CVVDLLGRAGRVKEAYELIKS 475
            +V +  +AG +  A+ + +S
Sbjct: 260 SLVTMYAKAGCMGAAFHVFES 280


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 202/567 (35%), Positives = 324/567 (57%), Gaps = 9/567 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV- 104
           + +A+ L K YF      +AR +FD +P  D V W  ++AG +     ++A   FV M  
Sbjct: 158 NFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGLSG----SEALEAFVRMAG 213

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
              V P++ TL+SVL A   + + +    VH    K GL    +V   L+ +YA C   M
Sbjct: 214 AGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCG-DM 272

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           + AR +F+ M+  + V++  LI+GY+ +G     + +FKE++  G+  +  +    +   
Sbjct: 273 ECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVH 332

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           +  G       +HA V+K G  +N PV  ++  +YCRF+ +  A + FD M EK + +WN
Sbjct: 333 SPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWN 392

Query: 285 TIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +I+GY ++G +E  + +F +M++    PN  T +S ++ACA L ALS G+ VH  I   
Sbjct: 393 AMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLGKWVHKIIANE 452

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
            L+ N+ +  ALIDMY KCG+I++++ IF  M ++++V+W  M+ GYG HG G EA++L+
Sbjct: 453 KLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHGQGAEALKLY 512

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGR 462
            +M+ + + P    F++VL ACSH GLV EG   F+SM +DY + P  E   C+VDLLGR
Sbjct: 513 KDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGITPGIEHCTCMVDLLGR 572

Query: 463 AGRVKEAYELIKSMPFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           AG++KEA+ELI   P       +WG LLGAC  H+  +L KLA+ ++ +L+P   G Y++
Sbjct: 573 AGQLKEAFELISEFPKSAVGPGIWGALLGACMVHKDGDLAKLASQKLFELEPENTGYYVL 632

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGV 581
           LSN+Y ++ ++ E A  R+  +     K  G + IE+ D+   F+A D+    +  +Y  
Sbjct: 633 LSNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTLIEIGDRPHVFMAGDRAHPQSDAIYLY 692

Query: 582 LEMLIRHMNETAYEPDIDCLIHDLEGE 608
           LE L   M E  Y PD +  ++D+E E
Sbjct: 693 LEKLTAKMIEAGYRPDTEAALYDVEEE 719



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 151/337 (44%), Gaps = 41/337 (12%)

Query: 213 NPYSFSIAVRACASTGWVSFGKL------------IHAAVIKHGFGSNLPVMNSILDMYC 260
           +P SFS A  A +     S G +            +HA  +  GF ++  V +++  +Y 
Sbjct: 110 SPDSFSFAFAATSLASSCSRGGISPPSAASAALRPLHALAVASGFAADNFVASALAKLYF 169

Query: 261 RFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMK-SERFSPNCFTFTS 319
                +DA + FD +   D + WNT++AG      SE L  F +M  +    P+  T  S
Sbjct: 170 TLSRGNDARKVFDAVPSPDTVLWNTLLAGLS---GSEALEAFVRMAGAGSVRPDSTTLAS 226

Query: 320 IIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD 379
           ++ A A +A  + G+ VHA   + GL  +  +   LI +YAKCG++  ++ +F  M   D
Sbjct: 227 VLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGPD 286

Query: 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAV-----------LTACSHA 428
           LVT+ +++ GY  +G    ++ELF E+V  G+RP     +A+           L  C HA
Sbjct: 287 LVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHA 346

Query: 429 GLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPL 488
            +V  GL           + N  +   +  L  R   +  A     +MP K  ES W  +
Sbjct: 347 HVVKAGL-----------DANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMES-WNAM 394

Query: 489 LGACKEHRLPNLGK--LAALRVLDLKPNMMGTYIILS 523
           +    ++ L  +       ++ L+++PN +     LS
Sbjct: 395 ISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALS 431


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 192/561 (34%), Positives = 325/561 (57%), Gaps = 9/561 (1%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  +   G +  A+ +FD + ER  V WT++I  Y    C ++   +F+ M+ +   P+
Sbjct: 186 LIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHMLDDGFEPD 245

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI--SMDNARL 169
            +++SS++ AC  + S+     +H +A++ GL     V   L+D+YA   +  SM++AR 
Sbjct: 246 GYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHARK 305

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGG-LGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
           VF  M   N +SWT LI+GY  SG      + +F+EML E +  N  ++S  ++ACA+  
Sbjct: 306 VFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLLKACANLS 365

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
               G+ IHA V+K        V N+++ MY    C+ +A + FD++ E ++++ +  + 
Sbjct: 366 DQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEARKAFDQLYETNILSMSPDVE 425

Query: 289 GYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
               + S       SK++      + FTF S+++A A++  L+ GQ++HA  ++ G   +
Sbjct: 426 TERNNASCS-----SKIEGMDDGVSTFTFASLLSAAASVGLLTKGQKLHALSMKAGFRSD 480

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
             ++N+L+ MYA+CG + D+ + F EM D ++++WTS++ G   HG+ K+A+ +F +M+ 
Sbjct: 481 QGISNSLVSMYARCGYLEDACRAFDEMKDHNVISWTSIISGLAKHGYAKQALSMFHDMIL 540

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVK 467
           +GV+P+ + ++AVL+ACSH GLV EG ++F+SM  D+ + P  E Y C+VDLL R+G V+
Sbjct: 541 AGVKPNDVTYIAVLSACSHVGLVKEGKEHFRSMQKDHGLLPRMEHYACIVDLLARSGLVE 600

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527
           EA + I  MP K D  VW  LL AC+ +    +G++AA  V++L+P     Y++LSN+YA
Sbjct: 601 EARQFINEMPCKADALVWKTLLSACRTYGNTEIGEIAANHVINLEPRDPAPYVLLSNLYA 660

Query: 528 AEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIR 587
             G W+E A+ R +MR     KE G+SW++V + +  F A D        +Y  L  LIR
Sbjct: 661 DAGLWDEVARIRSLMRDKNLSKETGLSWMDVGNTIHEFRAGDTSHPLAIDIYAKLVTLIR 720

Query: 588 HMNETAYEPDIDCLIHDLEGE 608
            + +  Y PD   ++HD+  E
Sbjct: 721 EIKDIGYVPDTSIVLHDMSEE 741



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 151/330 (45%), Gaps = 16/330 (4%)

Query: 223 ACASTGWVSFGKLIHAAVIKHG-FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE-KDL 280
           + A  G +  G+ +H  +++     ++  V NS+L MY +   +  A + FD+M   +DL
Sbjct: 49  SAARAGDLRLGRALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARRVFDQMCGVRDL 108

Query: 281 ITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           ++W  + +   ++G+  E L +  +M      PN FT  +   AC           V  G
Sbjct: 109 VSWTAMASCLARNGAERESLRLLGEMLELGLRPNAFTLCAAARACFPQELFRLAGGVVLG 168

Query: 340 IV-RRGLDG-NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
            V + G  G ++++  ALIDM+A+ G++  +Q++F  + +R  V WT ++  Y   G   
Sbjct: 169 FVLKTGFWGTDVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCAS 228

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVV 457
           + +ELF  M+  G  PD     ++++AC+  G V  G +         +  +  +   +V
Sbjct: 229 KVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDSCVSCGLV 288

Query: 458 DLLGR---AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVL---DL 511
           D+  +      ++ A ++ K+MP + +   W  L+    +  +     +A  R +    +
Sbjct: 289 DMYAKLKMERSMEHARKVFKTMP-RHNVMSWTALISGYVQSGVQENNVMALFREMLNESI 347

Query: 512 KPNMMGTYIILSNIYAAEGKWEEFAKFRKI 541
           +PN    +I  SN+  A     +    R+I
Sbjct: 348 RPN----HITYSNLLKACANLSDQDSGRQI 373



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 85/182 (46%), Gaps = 26/182 (14%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           ++ +L+  Y   G +E+A   FDEM + +V+SWT +I+G        QA ++F +M+   
Sbjct: 483 ISNSLVSMYARCGYLEDACRAFDEMKDHNVISWTSIISGLAKHGYAKQALSMFHDMILAG 542

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEG--SIYVENSL---MDVYATCCI 162
           V PN  T  +VL AC            H   +KEG E   S+  ++ L   M+ YA C +
Sbjct: 543 VKPNDVTYIAVLSACS-----------HVGLVKEGKEHFRSMQKDHGLLPRMEHYA-CIV 590

Query: 163 SM-------DNARLVFNDMKWKND-VSWTTLITGYAHSGNG-YGGLGVFKEMLLEGVEMN 213
            +       + AR   N+M  K D + W TL++     GN   G +     + LE  +  
Sbjct: 591 DLLARSGLVEEARQFINEMPCKADALVWKTLLSACRTYGNTEIGEIAANHVINLEPRDPA 650

Query: 214 PY 215
           PY
Sbjct: 651 PY 652


>gi|296082168|emb|CBI21173.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 202/566 (35%), Positives = 315/566 (55%), Gaps = 6/566 (1%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108
           A N+I  Y   G I  A  +F E  +RD VSW  MIAG+ +      A      M R   
Sbjct: 37  ANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMKRYGF 96

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
             + ++  S+LK    +  +     VH M +K G EG+++  ++L+D+YA C   +++A 
Sbjct: 97  AVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKC-ERVEDAF 155

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            VF  +  +N V+W  LI+GYA  G+      +   M LEGVE++  +F+  +       
Sbjct: 156 EVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPD 215

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFD---EMTEKDLITWNT 285
                  +HA ++KHG  S+  V N+I+  Y     + DA + FD   E  + D ++WN+
Sbjct: 216 LHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLDHVSWNS 275

Query: 286 IIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           I+ G+ +SG SE  L  F  M+S+    + + F++++ +C+ LA L  GQQVH  +++ G
Sbjct: 276 ILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSG 335

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
            + N  +A++LI MY+KCG I D++K F        + W S++ GY  HG GK A++LF 
Sbjct: 336 FEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFF 395

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRA 463
            M    V+ D I F+AVLTACSH GLV+EG  + KSM +DY + P  E Y C++DLLGRA
Sbjct: 396 LMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRA 455

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           GR+ EA  LI++MPF+PD  VW  LLGAC+      L    A  +L+L+P    TY++LS
Sbjct: 456 GRLDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASHLLELEPEEHCTYVLLS 515

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           +++    +W E A  +++M+  G KK  G SWIEV+++V  F A D+   + + +Y  L 
Sbjct: 516 SMFGHLRRWNEKASIKRLMKERGVKKVPGWSWIEVKNEVRSFNAEDRSHPNCEEIYLRLG 575

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGET 609
            L+  +    Y  + + L ++L  +T
Sbjct: 576 ELMEEIRRLDYVANSEFLQNNLLSDT 601



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 106/382 (27%), Positives = 189/382 (49%), Gaps = 9/382 (2%)

Query: 127 SLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLI 186
           +L  A++ H +AIK G   SIY  N+++  YA C   +  A  +F +   ++ VSW T+I
Sbjct: 14  ALYRASVNHCLAIKSGTTASIYTANNIISGYAKCG-EIRIASKMFGETSQRDAVSWNTMI 72

Query: 187 TGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFG 246
            G+ + GN    L   K M   G  ++ YSF   ++  A  G+V  G+ +H+ ++K G+ 
Sbjct: 73  AGFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYE 132

Query: 247 SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKM 305
            N+   +++LDMY + + + DA + F  +  ++ +TWN +I+GY + G       +   M
Sbjct: 133 GNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCM 192

Query: 306 KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNI 365
           + E    +  TF  ++             QVHA IV+ GL  +  + NA+I  Y++CG+I
Sbjct: 193 ELEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSI 252

Query: 366 SDSQKIFS---EMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
            D++++F    E  D D V+W S++ G+   G  ++A++ F+ M    V  D   F AVL
Sbjct: 253 EDAERVFDGAIETRDLDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVL 312

Query: 423 TACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDE 482
            +CS    +  G +    +      PN  +   ++ +  + G +++A +   + P K   
Sbjct: 313 RSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATP-KDSS 371

Query: 483 SVWGPLLGACKEHRLPNLGKLA 504
             W  L+    +H     GK+A
Sbjct: 372 IAWNSLIFGYAQH---GRGKIA 390



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 168/353 (47%), Gaps = 11/353 (3%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF-- 100
           +G     + L+  Y     +E+A  +F  +  R+ V+W  +I+GY        A+ +   
Sbjct: 132 EGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDC 191

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
           +E+   E++   F     L     +  L+    VH   +K GL     V N+++  Y+ C
Sbjct: 192 MELEGVEIDDGTFAPLLTLLDDPDLHKLTTQ--VHAKIVKHGLASDTTVCNAIITAYSEC 249

Query: 161 CISMDNARLVFNDMKWKND---VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSF 217
             S+++A  VF+      D   VSW +++TG++ SG     L  F+ M  + V ++ Y+F
Sbjct: 250 G-SIEDAERVFDGAIETRDLDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAF 308

Query: 218 SIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE 277
           S  +R+C+    +  G+ +H  V+K GF  N  V +S++ MY +   + DA + FD   +
Sbjct: 309 SAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPK 368

Query: 278 KDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQV 336
              I WN++I GY + G  +  L++F  MK  R   +  TF +++ AC+ +  +  G   
Sbjct: 369 DSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSF 428

Query: 337 HAGIVRR-GLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMM 387
              +    G+   +     +ID+  + G + +++ +   M  + D + W +++
Sbjct: 429 LKSMESDYGIPPRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLL 481


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 195/568 (34%), Positives = 328/568 (57%), Gaps = 8/568 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + L+ +L+ +Y   GL+ +A+ +F   P ++VVSWT++I+G    +C  +A  VF EM  
Sbjct: 56  TFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVVSWTILISGLAKNDCFVEAIDVFREMTM 115

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
               PNA T+SSVL A   +  +  A  VH   ++ G EG+++VE +L+D+Y+     M 
Sbjct: 116 GNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFG-CMG 174

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            AR +F  M  +N VSW  +++GY+  G     + +F  M  +G+ ++ Y+    + A  
Sbjct: 175 VARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASL 234

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           S G +  G  IH  +I+ G+ ++  +  +++D+Y   +C+ DA++ F EM  KD+  W  
Sbjct: 235 SVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTL 294

Query: 286 IIAGYEKSGS-SECLNMFSKMKS-ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           ++ G+         +  F+KM   +    +      I+++C+   AL  G++VHA  ++ 
Sbjct: 295 MLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALAIKT 354

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
               N+ + +A+IDMYA CGN+ D+++ F  M ++D+V W +M+ G G +G+G +AI+LF
Sbjct: 355 CFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLF 414

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN-PNKEIYGCVVDLLGR 462
            +M  SG+ PD   F++VL ACSHAG+V EGL+ F  M   + + PN + Y CV+D+LGR
Sbjct: 415 LQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHDIPNLQHYACVIDILGR 474

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AG++  AY  I +MPF+PD  V+  LLGAC+ H    LG   + ++ +++PN  G Y++L
Sbjct: 475 AGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLL 534

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQY--VYG 580
           SN+YA  G WE     R  +R    KK+ G S IE+  ++  F+A +K   H QY  + G
Sbjct: 535 SNMYALAGNWEGVKMTRASLRSKRLKKDPGFSSIEINQEIYTFMAGEK--DHPQYFKIEG 592

Query: 581 VLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           +L+ LI  + +  Y P+ + L+ D+  +
Sbjct: 593 ILKGLILKIKKAGYVPNTNVLLQDVSDD 620



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 113/384 (29%), Positives = 203/384 (52%), Gaps = 7/384 (1%)

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P A + +S+L+  K +K L     +H   I  GL  + ++ NSLM+ Y  C +  D A+ 
Sbjct: 22  PLAQSHASILRKLKDLKPLQQ---IHAQIITSGLTHNTFLSNSLMNAYVYCGLLAD-AKQ 77

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           +F+    KN VSWT LI+G A +      + VF+EM +   + N  + S  + A A+ G 
Sbjct: 78  IFHHTPCKNVVSWTILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGL 137

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           +   K +H   ++ GF  N+ V  +++DMY +F C+  A Q F+ M+E+++++WN I++G
Sbjct: 138 IRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSG 197

Query: 290 YEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           Y   G S E +++F+ M+ +    + +T  S+I A  ++  L  G  +H  I+R G + +
Sbjct: 198 YSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYEND 257

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
             +  AL+D+Y     + D+ ++FSEM  +D+  WT M+ G+ +  H   AI+ F++M+ 
Sbjct: 258 KHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLG 317

Query: 409 -SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
              ++ D IV M +L++CSH+G + +G +            N  +   V+D+    G ++
Sbjct: 318 IQNLKLDSIVLMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLE 377

Query: 468 EAYELIKSMPFKPDESVWGPLLGA 491
           +A      M  K D   W  ++  
Sbjct: 378 DAKRFFYGMGEK-DVVCWNAMIAG 400



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 193/365 (52%), Gaps = 7/365 (1%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           +G   + T L+  Y   G +  AR LF+ M ER+VVSW  +++GY+      +A  +F  
Sbjct: 154 EGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNL 213

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT-CC 161
           M R  +  + +T+ S++ A   +  L     +HG  I+ G E   +++ +LMD+Y +  C
Sbjct: 214 MRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNC 273

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEML-LEGVEMNPYSFSIA 220
           +  D+A  VF++M  K+  +WT ++TG++   +    +  F +ML ++ ++++       
Sbjct: 274 V--DDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGI 331

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           + +C+ +G +  G+ +HA  IK  F +N+ V ++++DMY     L DA ++F  M EKD+
Sbjct: 332 LSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDV 391

Query: 281 ITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           + WN +IAG   +G  ++ +++F +MK     P+  TF S++ AC+    +  G Q+   
Sbjct: 392 VCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYH 451

Query: 340 IVRRGLD-GNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHGHGK 397
           +V+   D  NL     +ID+  + G +  +    + M  + D   +++++     HG+ K
Sbjct: 452 MVKTSHDIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIK 511

Query: 398 EAIEL 402
              E+
Sbjct: 512 LGHEI 516



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 100/198 (50%), Gaps = 12/198 (6%)

Query: 302 FSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK 361
            S   ++R  P   +  SI+     L  L   QQ+HA I+  GL  N  L+N+L++ Y  
Sbjct: 12  LSSNPTQRLCPLAQSHASILRKLKDLKPL---QQIHAQIITSGLTHNTFLSNSLMNAYVY 68

Query: 362 CGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAV 421
           CG ++D+++IF     +++V+WT ++ G   +    EAI++F EM     +P+ +   +V
Sbjct: 69  CGLLADAKQIFHHTPCKNVVSWTILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSV 128

Query: 422 LTACSHAGLVDEGLKYFKSMNDYNVNPNKE----IYGCVVDLLGRAGRVKEAYELIKSMP 477
           L A ++ GL+    +  KS++ + V    E    +   +VD+  + G +  A +L +SM 
Sbjct: 129 LPAFANLGLI----RIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMS 184

Query: 478 FKPDESVWGPLLGACKEH 495
            +   S W  ++    +H
Sbjct: 185 ERNVVS-WNAIVSGYSDH 201


>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
          Length = 709

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 192/565 (33%), Positives = 327/565 (57%), Gaps = 13/565 (2%)

Query: 50  TNLIKSYFDEGLIEEARTLF-DEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108
           T+LI  Y     +  A ++F D   E +V ++  +I+G+ +     + +  + +M    V
Sbjct: 76  TSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGV 135

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
            P+ FT    +KAC  +  +     +HG+  K GLE  +++ ++L++ Y    + M++A+
Sbjct: 136 IPDKFTFPCAIKACLDVLEIKK---IHGLLFKFGLELDVFIGSALVNCYLKFGL-MEHAQ 191

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
           + F ++  ++ V W  ++ GYA  G     L  F+ M  E V  + ++ +  +   A  G
Sbjct: 192 VAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMG 251

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            ++ G++IH   +K G+ S + V NS++DMY +  C+ DA + F+ M EKD+ +WN+I++
Sbjct: 252 DLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVS 311

Query: 289 GYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL-- 345
            +E+ G  +  L +  +M      P+  T T+++ AC+ LAAL  G+++H  ++  GL  
Sbjct: 312 VHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGK 371

Query: 346 DG----NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           DG    ++ L NA+IDMYAKCG++ D+  +F  MS++D+ +W  M++GYG HG+G EA+E
Sbjct: 372 DGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALE 431

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLL 460
           +F  M +  ++PD + F+ VL+ACSHAG V +G  +   M + Y+V P  E Y CV+D+L
Sbjct: 432 MFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDML 491

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520
           GRAG++ EAYEL  +MP + +  VW  LL AC+ H+   L ++AA RV +L+P   G+Y+
Sbjct: 492 GRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYV 551

Query: 521 ILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYG 580
           ++SN+Y A G++EE  + R  MR    +K  G SWIE+++ V  F++ D+       +Y 
Sbjct: 552 LMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIELKNGVHVFVSADRAHPEAHSIYA 611

Query: 581 VLEMLIRHMNETAYEPDIDCLIHDL 605
            L  L   + E  Y PD+ C    L
Sbjct: 612 GLNSLTARLREHGYVPDVFCFFSPL 636



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 181/360 (50%), Gaps = 12/360 (3%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + + L+  Y   GL+E A+  F+E+P RDVV W  M+ GY            F  M   
Sbjct: 172 FIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDE 231

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMD 165
            V P+ FT++ VL     M  L+N  ++HG A+K G +  + V NSL+D+Y  C CI  +
Sbjct: 232 SVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCI--E 289

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +A  +F  M+ K+  SW ++++ +   G+  G L +   ML  G++ +  + +  + AC+
Sbjct: 290 DALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACS 349

Query: 226 STGWVSFGKLIHAAVIKHGFGS------NLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
               +  G+ IH  +I  G G       ++ + N+++DMY +   + DA+  F+ M+ KD
Sbjct: 350 HLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKD 409

Query: 280 LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           + +WN +I GY   G  +E L MFS+M   +  P+  TF  +++AC+    +S G+    
Sbjct: 410 VASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLV 469

Query: 339 GI-VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHG 396
            +  +  +   +     +IDM  + G + ++ ++   M  + + V W +++     H H 
Sbjct: 470 QMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHA 529



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 156/324 (48%), Gaps = 25/324 (7%)

Query: 213 NPYSFSIAV---RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDAN 269
            PY+ +  +   +A A    +S GK IH+ ++ +GF ++   + S+++MY + + ++ A 
Sbjct: 33  QPYNLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFAL 92

Query: 270 QYFDEMT-EKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATL 327
             F + T E ++  +N II+G+  +G   E    + KM++E   P+ FTF   I AC  +
Sbjct: 93  SIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDV 152

Query: 328 AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMM 387
             +   +++H  + + GL+ ++ + +AL++ Y K G +  +Q  F E+  RD+V W +M+
Sbjct: 153 LEI---KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMV 209

Query: 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN 447
            GY   G  +  +E F  M    V P R     VL+  +  G ++ G            +
Sbjct: 210 NGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYD 269

Query: 448 PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA---CKEHRLPNLGKLA 504
               +   ++D+ G+   +++A E+ + M  K D   W  ++     C +H         
Sbjct: 270 SGVAVSNSLIDMYGKCKCIEDALEIFEMMREK-DIFSWNSIVSVHEQCGDHD-------G 321

Query: 505 ALRVLD------LKPNMMGTYIIL 522
            LR+LD      ++P+++    +L
Sbjct: 322 TLRLLDRMLGAGIQPDLVTVTTVL 345


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 181/491 (36%), Positives = 298/491 (60%), Gaps = 2/491 (0%)

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + P     S +L  C  ++ L     +H        E  + + N ++++YA C  S++ A
Sbjct: 101 LEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCG-SLEEA 159

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           + +F+ M  K+ VSWT LI+GY+ SG     L +F +ML  G + N ++ S  ++A  + 
Sbjct: 160 QDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTG 219

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
                G+ +HA  +K+G+  N+ V +S+LDMY R+  + +A   F+ +  K++++WN +I
Sbjct: 220 PSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALI 279

Query: 288 AGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           AG+ + G  E  + +F +M  + F P  FT++S+  ACA+  +L  G+ VHA +++ G  
Sbjct: 280 AGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQ 339

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
               + N LIDMYAK G+I D++K+F  +  +D+V+W S++ GY  HG G EA++LF++M
Sbjct: 340 PIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQM 399

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
           +K+ V+P+ I F++VLTACSH+GL+DEG  YF+ M  + +      +  VVDLLGRAGR+
Sbjct: 400 LKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRL 459

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            EA + I+ MP KP  +VWG LLG+C+ H+  +LG  AA ++ +L P+  G +++LSNIY
Sbjct: 460 NEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIY 519

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           A+ G+  + AK RK+M+  G KKE   SW+E+ ++V  F+AND      + +  + E + 
Sbjct: 520 ASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKIS 579

Query: 587 RHMNETAYEPD 597
             + E  Y PD
Sbjct: 580 GKIKEIGYVPD 590



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 112/330 (33%), Positives = 191/330 (57%), Gaps = 2/330 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +L   ++  Y   G +EEA+ LFD+MP +D+VSWTV+I+GY+     ++A  +F +M+  
Sbjct: 141 VLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHL 200

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
              PN FTLSS+LKA     S  +   +H  ++K G + +++V +SL+D+YA     M  
Sbjct: 201 GFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWA-HMRE 259

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A+++FN +  KN VSW  LI G+A  G G   + +F +ML +G E   +++S    ACAS
Sbjct: 260 AKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACAS 319

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
           +G +  GK +HA VIK G      + N+++DMY +   + DA + F  + ++D+++WN+I
Sbjct: 320 SGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSI 379

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+GY + G  +E L +F +M   +  PN  TF S++ AC+    L  GQ     + +  +
Sbjct: 380 ISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKI 439

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEM 375
           +  +A    ++D+  + G ++++ K   EM
Sbjct: 440 EAQVAHHVTVVDLLGRAGRLNEANKFIEEM 469


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 192/565 (33%), Positives = 319/565 (56%), Gaps = 4/565 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I+  +L+ SY     ++ A  LF EMP +D VS+ VMI GYT +    +A  +F++M   
Sbjct: 179 IVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNM 238

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           +  P+ FT +++L    G + +     +HG+AIK      I+V N+L+D Y+     +D 
Sbjct: 239 DFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDY-IDL 297

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A+ +F++M   + VS+  +ITGYA +G       +FK +     +   + F+  +   A 
Sbjct: 298 AKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAI 357

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +S G+  HA  +     S + V N+++DMY + +   DAN+ F  +  ++ + W  I
Sbjct: 358 ELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAI 417

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+ Y + G   E L MF +M  E    +  TF S + A A LA++S G+Q+H+ ++R GL
Sbjct: 418 ISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKASANLASVSLGKQLHSSVIRLGL 477

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             ++   + L+DMYA CG++ D+ ++F EM DR++V W +++  Y  +G  +     F +
Sbjct: 478 LSSVFSGSVLVDMYANCGSMKDAIEVFKEMPDRNIVCWNALISAYSQNGDAEATFSSFAD 537

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAG 464
           M++SG+ PD + F++VLTACSH GLV++ L YF SM   Y ++P ++ Y  ++D+L R+G
Sbjct: 538 MIESGLYPDSVSFLSVLTACSHRGLVEKALWYFNSMTQVYKLDPRRKHYATMIDVLCRSG 597

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP-NMMGTYIILS 523
           R  EA  LI  MPF+PDE +W  +L +C+ H+  +L K AA ++  +        Y+ +S
Sbjct: 598 RFNEAENLISEMPFEPDEVMWSSVLNSCRIHKNQDLAKKAADQLFKMDALRDAAAYVNMS 657

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           NIYA  GKWE  AK +K MR  G KK    SW+E+  +V  F AND+    T+ +   + 
Sbjct: 658 NIYAEAGKWENAAKVKKAMRERGVKKVTAYSWVEIDHRVHVFTANDRTHPQTEQIRRKIN 717

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGE 608
            L+  M++  Y+PD  C + +++ E
Sbjct: 718 SLVELMDKEGYKPDTSCTLQNVDEE 742



 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 141/450 (31%), Positives = 231/450 (51%), Gaps = 13/450 (2%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           ++  Y     +  AR LF+ M  R+ VSWT+MI GY+  N   +A+ ++ EM R+ V P+
Sbjct: 83  MVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPD 142

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVY-ATCCISMDNARLV 170
             T +++L       +L     +H   I+ G   S+ V NSL+D Y  TCC  +D A  +
Sbjct: 143 HITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCC--LDIASQL 200

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW- 229
           F++M  K+ VS+  +ITGY   G     L +F  M +  ++  P  F+ A     S G  
Sbjct: 201 FSEMPTKDSVSFNVMITGYTKYGFREEALKLF--MQMRNMDFQPSGFTFAAMLGMSVGSE 258

Query: 230 -VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            V FG+ IH   IK  +  ++ V N++LD Y + D +  A   FDEM E D +++N II 
Sbjct: 259 DVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIIT 318

Query: 289 GYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           GY  +G  E   ++F +++   F    F F ++++  A    LS G+Q HA  V      
Sbjct: 319 GYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVS 378

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
            + + NAL+DMYAKC    D+ +IF+ ++ R+ V WT+++  Y   G  +EA+++F EM 
Sbjct: 379 EVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMN 438

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
           +  V  D+  F + L A ++   V  G +   S+    +  +      +VD+    G +K
Sbjct: 439 RENVHGDQATFASTLKASANLASVSLGKQLHSSVIRLGLLSSVFSGSVLVDMYANCGSMK 498

Query: 468 EAYELIKSMPFKPDESV--WGPLLGACKEH 495
           +A E+ K M   PD ++  W  L+ A  ++
Sbjct: 499 DAIEVFKEM---PDRNIVCWNALISAYSQN 525



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 100/219 (45%), Gaps = 32/219 (14%)

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS 295
           + A ++K GF   +   N  L    R + ++ A Q FDEM  ++  + N +++GY KS +
Sbjct: 33  VDARIVKTGFDPEISRFNFKLKDLVRANQIAKARQLFDEMPYRNTSSVNMMVSGYVKSRN 92

Query: 296 --------------------------------SECLNMFSKMKSERFSPNCFTFTSIIAA 323
                                            E  N++++M      P+  TF ++++ 
Sbjct: 93  LFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSG 152

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTW 383
                 L    Q+H+ I+R G   +L + N+L+D Y K   +  + ++FSEM  +D V++
Sbjct: 153 FDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSF 212

Query: 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
             M+ GY  +G  +EA++LF +M     +P    F A+L
Sbjct: 213 NVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAML 251



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 1/168 (0%)

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           N +  N ++  Y K  N+  ++++F  M  R+ V+WT M+ GY  +   KEA  L+ EM 
Sbjct: 76  NTSSVNMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMC 135

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
           +SGV+PD I F  +L+       + E L+    +  +  + +  ++  +VD   +   + 
Sbjct: 136 RSGVKPDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLD 195

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKE-HRLPNLGKLAALRVLDLKPN 514
            A +L   MP K   S    + G  K   R   L     +R +D +P+
Sbjct: 196 IASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPS 243


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 213/578 (36%), Positives = 317/578 (54%), Gaps = 45/578 (7%)

Query: 36  SDPPLIPKGPSILATN-LIKSYFDEGLIEEARTLFDEMP-----ERDVVSWTVMIAGYTS 89
           SD  L    P  +  N +I  Y   G  EEA   F EM      + +VVSWT +IAG   
Sbjct: 280 SDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQ 339

Query: 90  FNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIK-EGLEGSIY 148
                +A +VF +MV   V PN+ T++S + AC  +  L +   +HG  IK E L+  + 
Sbjct: 340 NGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLL 399

Query: 149 VENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE 208
           V NSL+D YA C  S++ AR  F  +K  + VSW  ++ GYA  G+    + +  EM  +
Sbjct: 400 VGNSLVDYYAKC-RSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQ 458

Query: 209 GVE---------------------------------MNPYSFSI--AVRACASTGWVSFG 233
           G+E                                 M+P + +I  A+ AC     +  G
Sbjct: 459 GIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLG 518

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
           K IH  V+++    +  V ++++ MY   D L  A   F E++ +D++ WN+II+   +S
Sbjct: 519 KEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQS 578

Query: 294 GSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
           G S   L++  +M       N  T  S + AC+ LAAL  G+++H  I+R GLD    + 
Sbjct: 579 GRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFIL 638

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
           N+LIDMY +CG+I  S++IF  M  RDLV+W  M+  YG HG G +A+ LF      G++
Sbjct: 639 NSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLK 698

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471
           P+ I F  +L+ACSH+GL++EG KYFK M  +Y ++P  E Y C+VDLL RAG+  E  E
Sbjct: 699 PNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLE 758

Query: 472 LIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK 531
            I+ MPF+P+ +VWG LLGAC+ H  P+L + AA  + +L+P   G Y++++NIY+A G+
Sbjct: 759 FIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGR 818

Query: 532 WEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIAND 569
           WE+ AK R +M+  G  K  G SWIEV+ K+  F+  D
Sbjct: 819 WEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGD 856



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 155/610 (25%), Positives = 265/610 (43%), Gaps = 119/610 (19%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            L + L++ Y   G +E+AR +FD+M ER+V SWT ++  Y     + +   +F  MV  
Sbjct: 125 FLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNE 184

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V P+ F    V KAC  +K+      V+   +  G EG+  V+ S++D++  C   MD 
Sbjct: 185 GVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCG-RMDI 243

Query: 167 ARLVFNDMKWKN-----------------------------------DVSWTTLITGYAH 191
           AR  F ++++K+                                    V+W  +I+GYA 
Sbjct: 244 ARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQ 303

Query: 192 SG----------------------------------NGYG--GLGVFKEMLLEGVEMNPY 215
           SG                                  NGY    L VF++M+LEGV+ N  
Sbjct: 304 SGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSI 363

Query: 216 SFSIAVRACASTGWVSFGKLIHAAVIK-HGFGSNLPVMNSILDMYCRFDCLSDANQYFDE 274
           + + AV AC +   +  G+ IH   IK     S+L V NS++D Y +   +  A + F  
Sbjct: 364 TIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGM 423

Query: 275 MTEKDLITWNTIIAGYEKSGSSE------------------------------------C 298
           + + DL++WN ++AGY   GS E                                     
Sbjct: 424 IKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAA 483

Query: 299 LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDM 358
           L  F +M S    PN  T +  +AAC  +  L  G+++H  ++R  ++ +  + +ALI M
Sbjct: 484 LEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISM 543

Query: 359 YAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVF 418
           Y+ C ++  +  +FSE+S RD+V W S++      G    A++L  EM  S V  + +  
Sbjct: 544 YSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTM 603

Query: 419 MAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPF 478
           ++ L ACS    + +G +  + +    ++    I   ++D+ GR G ++++  +   MP 
Sbjct: 604 VSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMP- 662

Query: 479 KPDESVWGPLLGACKEH--RLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA---EGKWE 533
           + D   W  ++     H   +  +      R + LKPN    +I  +N+ +A    G  E
Sbjct: 663 QRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLKPN----HITFTNLLSACSHSGLIE 718

Query: 534 EFAKFRKIMR 543
           E  K+ K+M+
Sbjct: 719 EGWKYFKMMK 728



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 171/354 (48%), Gaps = 14/354 (3%)

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGY-GGLGVFKEMLLEGVEM-NPYS- 216
           CCI         N  K  N       ITG++  G+ +  G+     MLL  +++ NP   
Sbjct: 32  CCIVASTNTKTQNLRKLTNA---RQRITGFSGGGSVHRNGVLNNAAMLLSSMDLTNPDEC 88

Query: 217 ---FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFD 273
              ++  ++ C     +  G  +HA ++ +G      + + +L++YC+  C+ DA + FD
Sbjct: 89  IEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFD 148

Query: 274 EMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSC 332
           +M+E+++ +W  I+  Y   G   E + +F  M +E   P+ F F  +  AC+ L     
Sbjct: 149 KMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRV 208

Query: 333 GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA 392
           G+ V+  ++  G +GN  +  +++DM+ KCG +  +++ F E+  +D+  W  M+ GY +
Sbjct: 209 GKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTS 268

Query: 393 HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDY-NVNPNKE 451
            G  K+A++   +M  SGV+PD++ + A+++  + +G  +E  KYF  M    +  PN  
Sbjct: 269 KGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVV 328

Query: 452 IYGCVVDLLGRAGRVKEAYELIKSMPF---KPDESVWGPLLGACKEHRLPNLGK 502
            +  ++    + G   EA  + + M     KP+       + AC    L   G+
Sbjct: 329 SWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGR 382



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 156/326 (47%), Gaps = 44/326 (13%)

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA-TCCISMDNARLVFNDM 174
           +S+L+ C+ + +L     VH   +  G++   ++ + L++VY  T C+  ++AR +F+ M
Sbjct: 93  ASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCV--EDARRMFDKM 150

Query: 175 KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGK 234
             +N  SWT ++  Y   G+    + +F  M+ EGV  + + F    +AC+       GK
Sbjct: 151 SERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGK 210

Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG 294
            ++  ++  GF  N  V  SILDM+ +   +  A ++F+E+  KD+  WN +++GY   G
Sbjct: 211 DVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKG 270

Query: 295 S-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353
              + L   S MK     P+  T+                                   N
Sbjct: 271 EFKKALKCISDMKLSGVKPDQVTW-----------------------------------N 295

Query: 354 ALIDMYAKCGNISDSQKIFSEMS-----DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           A+I  YA+ G   ++ K F EM        ++V+WT+++ G   +G+  EA+ +F +MV 
Sbjct: 296 AIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVL 355

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEG 434
            GV+P+ I   + ++AC++  L+  G
Sbjct: 356 EGVKPNSITIASAVSACTNLSLLRHG 381



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 123/241 (51%), Gaps = 4/241 (1%)

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           + SI+  C  L  L  G QVHA +V  G+D    L + L+++Y + G + D++++F +MS
Sbjct: 92  YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMS 151

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
           +R++ +WT++M  Y   G  +E I+LF  MV  GVRPD  VF  V  ACS       G  
Sbjct: 152 ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKD 211

Query: 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA--CKE 494
            +  M       N  + G ++D+  + GR+  A    + + FK D  +W  ++     K 
Sbjct: 212 VYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK-DVFMWNIMVSGYTSKG 270

Query: 495 HRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMS 554
                L  ++ +++  +KP+ +    I+S  YA  G++EE +K+   M G+   K   +S
Sbjct: 271 EFKKALKCISDMKLSGVKPDQVTWNAIISG-YAQSGQFEEASKYFLEMGGLKDFKPNVVS 329

Query: 555 W 555
           W
Sbjct: 330 W 330


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 198/626 (31%), Positives = 327/626 (52%), Gaps = 69/626 (11%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
           +L+  +   G + +AR +F EMPERD VSWTVM+ G        +A    ++M  +   P
Sbjct: 103 SLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTP 162

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS------- 163
             FTL++VL +C   ++ +    VH   +K GL   + V NS++++Y  C  S       
Sbjct: 163 TQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVF 222

Query: 164 -----------------------MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLG 200
                                  MD A  +F  M  ++ VSW  +I GY  +G     L 
Sbjct: 223 ERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALK 282

Query: 201 VFKEMLLEGVEMNPYSFSIA--VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDM 258
           +F  ML E   M P  F+I   + ACA+ G V  GK +HA +++     N  V N+++  
Sbjct: 283 LFSRMLHES-SMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALIST 341

Query: 259 YCRFDCLSDANQYFDE---------------------------------MTEKDLITWNT 285
           Y +   + +A +  D+                                 M  +D++ W  
Sbjct: 342 YAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTA 401

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I GYE++G + E +++F  M +    PN +T  ++++ CA+LA L  G+Q+H   +R  
Sbjct: 402 MIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSL 461

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHGHGKEAIELF 403
           L+ + +++NA+I MYA+ G+   ++++F ++  R + +TWTSM++    HG G+EA+ LF
Sbjct: 462 LEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLF 521

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGR 462
           +EM+++GV PDRI ++ VL+ACSHAG V+EG +Y+  + N++ + P    Y C+VDLL R
Sbjct: 522 EEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLAR 581

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AG   EA E I+ MP +PD   WG LL AC+ H+   L +LAA ++L + PN  G Y  +
Sbjct: 582 AGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAI 641

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           +N+Y+A G+W + A+  K  +    +KE G SW  +R K+  F A+D +      VY + 
Sbjct: 642 ANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMA 701

Query: 583 EMLIRHMNETAYEPDIDCLIHDLEGE 608
             +   +    + PD+  ++HD++ E
Sbjct: 702 ARMWEEIKGAGFVPDLQSVLHDVDDE 727



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 116/482 (24%), Positives = 210/482 (43%), Gaps = 102/482 (21%)

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC-------------- 161
           + +L+ C+   +      +H  A+K GL  S Y+ N+L+  Y                  
Sbjct: 30  ARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFD 89

Query: 162 ---------------ISM-------DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGL 199
                          +SM        +AR VF +M  ++ VSWT ++ G   +G     +
Sbjct: 90  EIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAI 149

Query: 200 GVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMY 259
               +M  +G     ++ +  + +CA T   + G+ +H+ V+K G GS +PV NS+L+MY
Sbjct: 150 KTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMY 209

Query: 260 CR-------------------------------FDCLSDANQYFDEMTEKDLITWNTIIA 288
            +                                  +  A   F+ M ++ +++WN +IA
Sbjct: 210 GKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIA 269

Query: 289 GYEKSG-SSECLNMFSKMKSE-RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           GY ++G  ++ L +FS+M  E   +P+ FT TS+++ACA L  +  G+QVHA I+R  + 
Sbjct: 270 GYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMA 329

Query: 347 GNLALANALIDMYAKCGNISDSQKI---------------------------------FS 373
            N  + NALI  YAK G++ ++++I                                 F 
Sbjct: 330 YNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFG 389

Query: 374 EMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDE 433
            M++RD+V WT+M++GY  +G   EAI+LF  M+  G  P+     AVL+ C+    +D 
Sbjct: 390 VMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDY 449

Query: 434 GLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACK 493
           G +         +  +  +   ++ +  R+G    A  +   + ++ +   W  ++ A  
Sbjct: 450 GKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALA 509

Query: 494 EH 495
           +H
Sbjct: 510 QH 511



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 109/467 (23%), Positives = 198/467 (42%), Gaps = 69/467 (14%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDV------------------------------ 77
           +A +++  Y   G  E A T+F+ MP R V                              
Sbjct: 201 VANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRS 260

Query: 78  -VSWTVMIAGYTSFNCHNQAWTVFVEMV-RNEVNPNAFTLSSVLKACKGMKSLSNAALVH 135
            VSW  MIAGY       +A  +F  M+  + + P+ FT++SVL AC  + ++     VH
Sbjct: 261 IVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVH 320

Query: 136 GMAIKEGLEGSIYVENSLMDVYATC-------------------CIS------------- 163
              ++  +  +  V N+L+  YA                      IS             
Sbjct: 321 AYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGD 380

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           M++AR +F  M  ++ V+WT +I GY  +G     + +F+ M+  G E N Y+ +  +  
Sbjct: 381 MESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSV 440

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLIT 282
           CAS   + +GK IH   I+     +  V N+I+ MY R      A + FD++   K+ IT
Sbjct: 441 CASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETIT 500

Query: 283 WNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           W ++I    + G   E + +F +M      P+  T+  +++AC+    ++ G++ +  I 
Sbjct: 501 WTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIK 560

Query: 342 -RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEA 399
               +   ++    ++D+ A+ G  S++Q+    M  + D + W S++     H +  E 
Sbjct: 561 NEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNA-EL 619

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV 446
            EL  E + S    +   + A+    S  G   +  + +K+  +  V
Sbjct: 620 AELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAV 666


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 201/596 (33%), Positives = 328/596 (55%), Gaps = 36/596 (6%)

Query: 45  PSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           P++   N L+ +     L+ +   LF  MPERD VS+  +I G++S     ++  ++  +
Sbjct: 77  PNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRAL 136

Query: 104 VRNE-VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           +R E V P   TLS+++     +   +    VH   ++ G     +V + L+D+YA   +
Sbjct: 137 LREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGL 196

Query: 163 SMDNARLVFNDMKWK-------------------------------NDVSWTTLITGYAH 191
             D AR VF +M+ K                               + ++WTT++TG   
Sbjct: 197 IRD-ARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQ 255

Query: 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251
           +G     L VF+ M  EGV ++ Y+F   + AC +      GK IHA + +  +  N+ V
Sbjct: 256 NGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFV 315

Query: 252 MNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERF 310
            ++++DMY +   +  A   F  MT +++I+W  +I GY + + S E +  FS+M+ +  
Sbjct: 316 GSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGI 375

Query: 311 SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQK 370
            P+ FT  S+I++CA LA+L  G Q H   +  GL   + ++NAL+ +Y KCG+I D+ +
Sbjct: 376 KPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHR 435

Query: 371 IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           +F EMS  D V+WT+++ GY   G  KE I+LF++M+ +G++PD + F+ VL+ACS AGL
Sbjct: 436 LFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGL 495

Query: 431 VDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           V++G  YF SM  D+++ P  + Y C++DL  R+GR KEA E IK MP  PD   W  LL
Sbjct: 496 VEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLL 555

Query: 490 GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKK 549
            +C+      +GK AA  +L+  P    +Y++L +++AA+G+W E A  R+ MR    KK
Sbjct: 556 SSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKK 615

Query: 550 EVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDL 605
           E G SWI+ ++KV  F A+D+    +  +Y  LE L   M E  Y+PD+  ++HD+
Sbjct: 616 EPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDV 671



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/413 (26%), Positives = 207/413 (50%), Gaps = 39/413 (9%)

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P  F L+ +L A      L+ A  V      E  + +++  N+L+   A   +  D  RL
Sbjct: 46  PPTFLLNHLLTAYAKSGRLARARRV----FDEMPDPNLFTRNALLSALAHSRLVPDMERL 101

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAVRACASTG 228
            F  M  ++ VS+  LITG++ +G+    + +++ +L E  V     + S  +   ++  
Sbjct: 102 -FASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALS 160

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE-------------- 274
             + G  +H  V++ GFG+   V + ++DMY +   + DA + F E              
Sbjct: 161 DRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLIT 220

Query: 275 -----------------MTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFT 316
                            M ++D ITW T++ G  ++G   E L++F +M++E    + +T
Sbjct: 221 GLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYT 280

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           F SI+ AC  LAA   G+Q+HA I R   + N+ + +AL+DMY+KC +I  ++ +F  M+
Sbjct: 281 FGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMT 340

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
            R++++WT+M++GYG +   +EA+  F EM   G++PD     +V+++C++   ++EG +
Sbjct: 341 CRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQ 400

Query: 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           +        +     +   +V L G+ G +++A+ L   M F  D+  W  L+
Sbjct: 401 FHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFH-DQVSWTALV 452



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 93/401 (23%), Positives = 171/401 (42%), Gaps = 50/401 (12%)

Query: 227 TGWVSFGKLIHAA-VIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           T +   G+L  A  V       NL   N++L        + D  + F  M E+D +++N 
Sbjct: 56  TAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNA 115

Query: 286 IIAGYEKSGS-SECLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           +I G+  +GS +  + ++  + + E   P   T +++I   + L+  + G  VH  ++R 
Sbjct: 116 LITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRL 175

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMS--------------------------- 376
           G      + + L+DMYAK G I D++++F EM                            
Sbjct: 176 GFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLF 235

Query: 377 ----DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD 432
               DRD +TWT+M+ G   +G   EA+++F  M   GV  D+  F ++LTAC      +
Sbjct: 236 QLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASE 295

Query: 433 EGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG-- 490
           EG +    +       N  +   +VD+  +   ++ A  + + M  +   S    ++G  
Sbjct: 296 EGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYG 355

Query: 491 --ACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFR--KIMRGMG 546
             AC E  +    +   +++  +KP+      ++S+  A     EE A+F    ++ G+ 
Sbjct: 356 QNACSEEAVRAFSE---MQMDGIKPDDFTLGSVISSC-ANLASLEEGAQFHCLALVSGLM 411

Query: 547 SKKEVGMSWIEVRDKVCGFIAN-----DKMGSHTQYVYGVL 582
               V  + + +  K CG I +     D+M  H Q  +  L
Sbjct: 412 RYITVSNALVTLYGK-CGSIEDAHRLFDEMSFHDQVSWTAL 451


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 199/566 (35%), Positives = 323/566 (57%), Gaps = 5/566 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           +I    L+  Y   G ++ A  +F E+ E+D +SW  M++ Y     + +A     EM+R
Sbjct: 300 NIQCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLR 359

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
               P+   + S+  A   +  L N   VH  AIK+ L+    V N+LMD+Y  C   ++
Sbjct: 360 GGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKC-RYIE 418

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            +  VF+ M+ K+ +SWTT+IT YA S      L +F+E   EG++++P      + AC+
Sbjct: 419 YSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACS 478

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               +   K +H   I++G   +L V N I+D+Y     +  + + F+ + +KD++TW +
Sbjct: 479 GLETILLAKQLHCYAIRNGL-LDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTS 537

Query: 286 IIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I  Y  SG  +E L +F++M+S    P+     SI+ A   L++L+ G++VH  ++RR 
Sbjct: 538 MINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRN 597

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
                A+ ++L+DMY+ CG++S + K+F+ +  +D+V WT+M+   G HGHGK+AI+LF 
Sbjct: 598 FHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFK 657

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK-SMNDYNVNPNKEIYGCVVDLLGRA 463
            M+++GV PD + F+A+L ACSH+ LV+EG  Y    M+ Y + P +E Y CVVDLLGR+
Sbjct: 658 RMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRS 717

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G+ +EAYE IKSMP KP   VW  LLGAC+ H+   L  +AA R+L+L+P+  G Y+++S
Sbjct: 718 GQTEEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHELAVVAANRLLELEPDNPGNYVLVS 777

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV-YGVL 582
           N++A  GKW    + R  +   G +K+   SWIE+ + V  F   D      + +   + 
Sbjct: 778 NVFAEMGKWNNAKEVRARISERGLRKDPACSWIEIGNNVHTFTTRDNSHRDAERINLKLA 837

Query: 583 EMLIRHMNETAYEPDIDCLIHDLEGE 608
           E+  R   E  Y  D   ++HD+  E
Sbjct: 838 EITERLRKEGGYTEDTRSVLHDVSEE 863



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 153/504 (30%), Positives = 257/504 (50%), Gaps = 21/504 (4%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM---V 104
           LAT L+  Y   G + +AR LFD M  R V SW  +I  Y S     +A  V+  M    
Sbjct: 97  LATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSA 156

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
            + V P+  TL+SVLKA            VHG+A+K GL+ S +V N+L+ +YA C I +
Sbjct: 157 ASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGI-L 215

Query: 165 DNARLVFNDMKWKNDV-SWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           D+A  VF  M    DV SW ++I+G   +G     L +F+ M    + MN Y+    ++ 
Sbjct: 216 DSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQV 275

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C     ++ G+ +HAA++K G   N+   N++L MY +   +  A + F E+ EKD I+W
Sbjct: 276 CTELAQLNLGRELHAALLKSGSEVNIQC-NALLVMYTKCGRVDSALRVFREIDEKDYISW 334

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N++++ Y ++G  +E +   S+M    F P+     S+ +A   L  L  G++VHA  ++
Sbjct: 335 NSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIK 394

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
           + LD +  + N L+DMY KC  I  S  +F  M  +D ++WT+++  Y       EA+E+
Sbjct: 395 QRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEI 454

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP---NKEIYGCVVDL 459
           F E  K G++ D ++  ++L ACS  GL  E +   K ++ Y +     +  +   ++D+
Sbjct: 455 FREAQKEGIKVDPMMIGSILEACS--GL--ETILLAKQLHCYAIRNGLLDLVVKNRIIDI 510

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNMMG 517
            G  G V  + ++ +++  K D   W  ++       L N  L   A ++  D++P+   
Sbjct: 511 YGECGEVYHSLKMFETVEQK-DIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPD--- 566

Query: 518 TYIILSNIYAAEGKWEEFAKFRKI 541
             + L +I  A G     AK +++
Sbjct: 567 -SVALVSILGAIGGLSSLAKGKEV 589



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 155/542 (28%), Positives = 250/542 (46%), Gaps = 55/542 (10%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPE-RDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
           + +A  LI  Y   G+++ A  +F+ M + RDV SW  MI+G        QA  +F  M 
Sbjct: 199 TFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQ 258

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
           R  ++ N++T   VL+ C  +  L+    +H   +K G E +I   N+L+ +Y T C  +
Sbjct: 259 RAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQC-NALLVMY-TKCGRV 316

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           D+A  VF ++  K+ +SW ++++ Y  +G     +    EML  G + +         A 
Sbjct: 317 DSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAV 376

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
              GW+  GK +HA  IK    S+  V N+++DMY +   +  +   FD M  KD I+W 
Sbjct: 377 GHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWT 436

Query: 285 TIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           TII  Y +S    E L +F + + E    +     SI+ AC+ L  +   +Q+H   +R 
Sbjct: 437 TIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRN 496

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           GL  +L + N +ID+Y +CG +  S K+F  +  +D+VTWTSM+  Y   G   EA+ LF
Sbjct: 497 GLL-DLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLF 555

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL---- 459
            EM  + V+PD +  +++L A      + +G +    +   N +  + I   +VD+    
Sbjct: 556 AEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGC 615

Query: 460 ---------------------------LGRAGRVKEAYELIKSM---PFKPDESVWGPLL 489
                                       G  G  K+A +L K M      PD   +  LL
Sbjct: 616 GSLSGALKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALL 675

Query: 490 GACKEHRLPNLGKLAALRVLDLKPNMMGTYII---------LSNIYAAEGKWEEFAKFRK 540
            AC   +L N GK      LD+   MM TY +         + ++    G+ EE  +F K
Sbjct: 676 YACSHSKLVNEGKC----YLDM---MMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIK 728

Query: 541 IM 542
            M
Sbjct: 729 SM 730



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 137/276 (49%), Gaps = 17/276 (6%)

Query: 225 ASTGWVSFGKLIHAAVIKHGF--GSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           A+   V+ G  +HA  +  G   G +  +   +L MY +   ++DA   FD M+ + + +
Sbjct: 69  AAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFS 128

Query: 283 WNTIIAGYEKSGSS-ECLNMFSKMK---SERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           WN +I  Y  SGS+ E L ++  M+   +   +P+  T  S++ A        CG +VH 
Sbjct: 129 WNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHG 188

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD-RDLVTWTSMMIGYGAHGHGK 397
             V+ GLD +  +ANALI MYAKCG +  + ++F  M D RD+ +W SM+ G   +G   
Sbjct: 189 LAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFL 248

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK----YFKSMNDYNVNPNKEIY 453
           +A++LF  M ++ +  +    + VL  C+    ++ G +      KS ++ N+  N    
Sbjct: 249 QALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQCNA--- 305

Query: 454 GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
             ++ +  + GRV  A  + + +  K D   W  +L
Sbjct: 306 --LLVMYTKCGRVDSALRVFREIDEK-DYISWNSML 338


>gi|297596789|ref|NP_001043072.2| Os01g0374200 [Oryza sativa Japonica Group]
 gi|255673241|dbj|BAF04986.2| Os01g0374200 [Oryza sativa Japonica Group]
          Length = 629

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 192/559 (34%), Positives = 316/559 (56%), Gaps = 6/559 (1%)

Query: 41  IPKGPS--ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWT 98
           IP   S   + T+L+  Y   G++ +AR +FD MP+R+  SW+ M+AGY +  C  +A+ 
Sbjct: 40  IPSAVSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFD 99

Query: 99  VFVEMVRN-EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVY 157
           +F  M+       + F  ++VL A      L     +HG+ +K+GL   + VENSL+ +Y
Sbjct: 100 LFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMY 159

Query: 158 ATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSF 217
           A     M  A  VF   + +N ++W+ +ITGYA +G     + +F +M   G     ++F
Sbjct: 160 AKAGC-MGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTF 218

Query: 218 SIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE 277
              + A +  G ++ GK  H  ++K GF   + V ++++DMY +  C++DA + FD++ E
Sbjct: 219 VGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYE 278

Query: 278 KDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQV 336
            D++ W  +++G+ ++G   E L ++++M  E   P+  T  S + ACA +AAL  G+Q+
Sbjct: 279 VDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQL 338

Query: 337 HAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHG 396
           H  IV+ GL     + +AL  MY+KCGN+ D   +F  + DRD++ W S++ G+  +G G
Sbjct: 339 HTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCG 398

Query: 397 KEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGC 455
             A++LF+EM   G  PD I F+ +L ACSH GLVD G +YF  M  DY + P  + Y C
Sbjct: 399 NGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYAC 458

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM 515
           +VD+L RAG +KEA + I+S+       +W  +LGAC+  R  ++G  A  R+++L    
Sbjct: 459 MVDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTGD 518

Query: 516 MGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHT 575
              YI+LSNIYA++ KW +  + R +MR  G  K+ G SW+E+  +V  F+  ++     
Sbjct: 519 SSAYILLSNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVELNSRVHVFVVGEQQHPEA 578

Query: 576 QYVYGVLEMLIRHMNETAY 594
           + +   L  L +HM +  Y
Sbjct: 579 ENINAQLRRLAKHMKDEGY 597


>gi|48475127|gb|AAT44196.1| hypothetical protein, contains pentatricopeptide (PPR) repeat
           [Oryza sativa Japonica Group]
 gi|51854327|gb|AAU10708.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 634

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 218/606 (35%), Positives = 326/606 (53%), Gaps = 34/606 (5%)

Query: 5   RLLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEE 64
           R L +AA+ H             +V+ S++ S           +AT L   Y   G +  
Sbjct: 36  RFLPHAASLHAF-----------AVRSSAVSS---------VFVATALADVYAKAGCLGL 75

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           A  +FDEMP ++VVSWT ++A  T     ++A   F EM  + V+ +++  ++ L AC  
Sbjct: 76  ALKVFDEMPHKNVVSWTTLVASLTRAGRRHEALRRFSEMRASGVHCDSYAYAAALTACAD 135

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTT 184
              LS    VH    K GL+ + YV N+L  +YA C   +D A    + M  ++  +WTT
Sbjct: 136 AGLLSRGREVHAFCAKLGLDSTPYVANTLATLYARCS-DVDRALAAVSRMGTRDVAAWTT 194

Query: 185 LITGYAHSGNGYGGLGVFKEMLLE----GVEMNPYSFSIAVRACASTGWVSFGKLIHAAV 240
           +I+ Y  +G     +  F  ML E        N Y+++  + ACA   WV  G+ +HA  
Sbjct: 195 VISAYVQTGRAKEAIEAFVRMLREESSVAASPNEYTYAAVIAACADIAWVCLGEQLHAQA 254

Query: 241 IKHGFGSNLPVMNSILDMYCRF-DCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-C 298
            + GF     V NS++ +Y R   CLS A+  F E   KD+++W+ II+GY + G +E  
Sbjct: 255 ARKGFACARSVANSLVTLYTRAAGCLSAADAVFRESVVKDVVSWSAIISGYAQEGLAEDA 314

Query: 299 LNMFSKMKSERF--SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALI 356
             +F +M+       PN FT  S+++ CAT A+L  G+Q+H   V  GL+ +  + +ALI
Sbjct: 315 FALFREMRHHSGCPRPNEFTLASLLSVCATAASLDAGRQLHTLAVAAGLEHHAMIRSALI 374

Query: 357 DMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI 416
           DMY K G++ D+  +FS     D+V+WT+M++GY  HGH K+A+ELF EM   G++PD +
Sbjct: 375 DMYGKSGSMLDADIVFSHRVKDDVVSWTAMIVGYAEHGHSKKALELFQEMCHVGLKPDHV 434

Query: 417 VFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELI-K 474
            F+ VL AC HAG V+ GL+Y   MN  Y + P KE YGCVVDLLGRAGR+ EA ELI K
Sbjct: 435 TFIGVLNACCHAGEVELGLRYLNEMNQIYGLYPAKEHYGCVVDLLGRAGRINEAEELIGK 494

Query: 475 SMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEE 534
               + D  VW  LL AC        GK AA R ++ +P   G ++ ++N+YA++G+W E
Sbjct: 495 IAANERDGVVWTSLLRACAARGEEETGKKAAERAMEAEPWGAGAHVAMANLYASKGQWHE 554

Query: 535 FAKFRKIMRGMGSKKEVGMSWIEV---RDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNE 591
            A+ R +M+  G  K  G S I V     +V  F+A+D+       +Y +LE++      
Sbjct: 555 AAQERHMMKQKGVVKGAGWSSITVGGEGRRVGVFVASDRTHPQDSAIYRMLELIYFGTGM 614

Query: 592 TAYEPD 597
             Y PD
Sbjct: 615 ARYVPD 620



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 146/325 (44%), Gaps = 45/325 (13%)

Query: 213 NPYSFSIAVRACASTGWVSF---GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDAN 269
           +P+  S+  ++CA+     F      +HA  ++    S++ V  ++ D+Y +  CL  A 
Sbjct: 18  DPFVLSLVFKSCAAAADARFLPHAASLHAFAVRSSAVSSVFVATALADVYAKAGCLGLAL 77

Query: 270 QYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLA 328
           + FDEM  K++++W T++A   ++G   E L  FS+M++     + + + + + ACA   
Sbjct: 78  KVFDEMPHKNVVSWTTLVASLTRAGRRHEALRRFSEMRASGVHCDSYAYAAALTACADAG 137

Query: 329 ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMI 388
            LS G++VHA   + GLD    +AN L  +YA+C ++  +    S M  RD+  WT+++ 
Sbjct: 138 LLSRGREVHAFCAKLGLDSTPYVANTLATLYARCSDVDRALAAVSRMGTRDVAAWTTVIS 197

Query: 389 GYGAHGHGKEAIELFDEMVKS----GVRPDRIVFMAVLTACS-----------HAGLVDE 433
            Y   G  KEAIE F  M++        P+   + AV+ AC+           HA    +
Sbjct: 198 AYVQTGRAKEAIEAFVRMLREESSVAASPNEYTYAAVIAACADIAWVCLGEQLHAQAARK 257

Query: 434 GLKYFKSMNDYNVNPNKEIYGC---------------------VVDLLGRAGRVKEAYEL 472
           G    +S+ +  V       GC                     ++    + G  ++A+ L
Sbjct: 258 GFACARSVANSLVTLYTRAAGCLSAADAVFRESVVKDVVSWSAIISGYAQEGLAEDAFAL 317

Query: 473 IKSMPF-----KPDESVWGPLLGAC 492
            + M       +P+E     LL  C
Sbjct: 318 FREMRHHSGCPRPNEFTLASLLSVC 342


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 194/563 (34%), Positives = 324/563 (57%), Gaps = 8/563 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + ++++      G + +A+ +FD MPE+DVV W  +I GY       ++  +F+EM+   
Sbjct: 182 VGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGG 241

Query: 108 VNPNAFTLSSVLKAC--KGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           + P+  T++++LKAC   G+K +   A  H   +  G+   ++V  SL+D+Y+       
Sbjct: 242 LRPSPVTMANLLKACGQSGLKKVGMCA--HSYVLALGMGNDVFVLTSLVDMYSNLG-DTG 298

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +A LVF+ M  ++ +SW  +I+GY  +G       +F+ ++  G   +  +    +R C+
Sbjct: 299 SAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCS 358

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
            T  +  G+++H+ +I+    S+L +  +I+DMY +   +  A   F  M +K++ITW  
Sbjct: 359 QTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTA 418

Query: 286 IIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           ++ G  ++G +E  L +F +M+ E+ + N  T  S++  CA L +L+ G+ VHA  +R G
Sbjct: 419 MLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHG 478

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFS-EMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
              +  + +ALIDMYAKCG I  ++K+F+ E   +D++   SM++GYG HGHG+ A+ ++
Sbjct: 479 YAFDAVITSALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVY 538

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGR 462
             M++  ++P++  F+++LTACSH+GLV+EG   F SM  D++V P  + Y C+VDL  R
Sbjct: 539 SRMIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERDHDVRPQHKHYACLVDLHSR 598

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AGR++EA EL+K MPF+P   V   LL  C+ H+  N+G   A R++ L     G Y++L
Sbjct: 599 AGRLEEADELVKQMPFQPSTDVLEALLSGCRTHKNTNMGIQIADRLISLDYLNSGIYVML 658

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           SNIYA   KWE     R +MR  G KK  G S IEV +KV  F A+D        +Y +L
Sbjct: 659 SNIYAEARKWESVNYIRGLMRMQGMKKIPGYSLIEVGNKVYTFFASDDSHPSWADIYQLL 718

Query: 583 EMLIRHMNETAYEPDIDCLIHDL 605
           E L   +    Y PD  C++ D+
Sbjct: 719 ENLRLEVEAEGYIPDTSCVLRDV 741



 Score =  209 bits (531), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 137/536 (25%), Positives = 254/536 (47%), Gaps = 41/536 (7%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S LA  LI+ Y D G +  AR +FD+    +      MIAG+     H +   +F  M  
Sbjct: 79  SFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIAGFLRNQQHMEVPRLFRMMGS 138

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
            ++  N++T    LKAC  +        +   A++ G    +YV +S+++         D
Sbjct: 139 CDIEINSYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLAD 198

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A+ VF+ M  K+ V W ++I GY   G  +  + +F EM+  G+  +P + +  ++AC 
Sbjct: 199 -AQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACG 257

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
            +G    G   H+ V+  G G+++ V+ S++DMY        A   FD M  + LI+WN 
Sbjct: 258 QSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNA 317

Query: 286 IIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I+GY ++G   E   +F ++       +  T  S+I  C+  + L  G+ +H+ I+R+ 
Sbjct: 318 MISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKE 377

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           L+ +L L+ A++DMY+KCG I  +  +F  M  ++++TWT+M++G   +G+ ++A++LF 
Sbjct: 378 LESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFC 437

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
           +M +  V  + +  ++++  C+H G + +G         +    +  I   ++D+  + G
Sbjct: 438 QMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMYAKCG 497

Query: 465 RVKEAYELI------------KSM-----------------------PFKPDESVWGPLL 489
           ++  A +L              SM                         KP+++ +  LL
Sbjct: 498 KIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLL 557

Query: 490 GACKEHRLPNLGKL---AALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIM 542
            AC    L   GK    +  R  D++P     Y  L ++++  G+ EE  +  K M
Sbjct: 558 TACSHSGLVEEGKALFHSMERDHDVRPQ-HKHYACLVDLHSRAGRLEEADELVKQM 612



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 169/364 (46%), Gaps = 3/364 (0%)

Query: 127 SLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLI 186
           +L +   +H   IK  +    ++   L+ VY+     + +AR VF+            +I
Sbjct: 59  TLIHVKSIHAQIIKNWVSTESFLAAKLIRVYSDLGF-LGHARNVFDQCSLPETAVCNAMI 117

Query: 187 TGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFG 246
            G+  +        +F+ M    +E+N Y+   A++AC        G  I  A ++ GF 
Sbjct: 118 AGFLRNQQHMEVPRLFRMMGSCDIEINSYTCMFALKACTDLLDDEVGMEIIRAAVRRGFH 177

Query: 247 SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKM 305
            +L V +S+++   +   L+DA + FD M EKD++ WN+II GY + G   E + MF +M
Sbjct: 178 LHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEM 237

Query: 306 KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNI 365
                 P+  T  +++ AC        G   H+ ++  G+  ++ +  +L+DMY+  G+ 
Sbjct: 238 IGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDT 297

Query: 366 SDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTAC 425
             +  +F  M  R L++W +M+ GY  +G   E+  LF  +V+SG   D    ++++  C
Sbjct: 298 GSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGC 357

Query: 426 SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVW 485
           S    ++ G      +    +  +  +   +VD+  + G +K+A  +   M  K +   W
Sbjct: 358 SQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMG-KKNVITW 416

Query: 486 GPLL 489
             +L
Sbjct: 417 TAML 420


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 198/566 (34%), Positives = 328/566 (57%), Gaps = 9/566 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           ++ +LI  Y     I  ART+F+ M ERD++SW  +IAG    +   +A  +F++++R  
Sbjct: 359 VSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCG 418

Query: 108 VNPNAFTLSSVLKACKGM-KSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT--CCISM 164
           + P+ +T++SVLKA   + + LS +  +H  AIK       +V  +L+D Y+   C   M
Sbjct: 419 LKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRC---M 475

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
             A ++F    + + V+W  +++GY  S +G+  L +F  M  +G   + ++ +  ++ C
Sbjct: 476 KEAEVLFGRNNF-DLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTC 534

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
                ++ GK +HA  IK G+  +L V + ILDMY +   +S A   FD +   D + W 
Sbjct: 535 GFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWT 594

Query: 285 TIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           T+I+G  ++G  E  L++FS+M+     P+ FT  ++  A + L AL  G+Q+HA  ++ 
Sbjct: 595 TLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKL 654

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
               +  +  +L+DMYAKCG+I D+  +F  +   ++  W +M++G   HG GKEA++LF
Sbjct: 655 NCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLF 714

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGR 462
            +M   G++PD++ F+ VL+ACSH+GLV E  KY +SM+ DY + P  E Y C+ D LGR
Sbjct: 715 KQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLADALGR 774

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AG VKEA  LI SM  +   S++  LL AC+       GK  A ++L+L+P     Y++L
Sbjct: 775 AGLVKEAENLIDSMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLL 834

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           SN+YAA  KW+E    R +M+G   KK+ G SWIEV++K+  F+ +D+    T+ +Y  +
Sbjct: 835 SNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHLFVVDDRSNPQTELIYKKV 894

Query: 583 EMLIRHMNETAYEPDIDCLIHDLEGE 608
           + +IR + +  Y P+ D  + D+E E
Sbjct: 895 KDMIRDIKQEGYVPETDFTLVDVEEE 920



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 125/480 (26%), Positives = 237/480 (49%), Gaps = 7/480 (1%)

Query: 76  DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVH 135
           +++S   +++GY     ++     F++MV +++  +  T   VL     + SL+    VH
Sbjct: 286 EIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVH 345

Query: 136 GMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNG 195
            MA+K GL+  + V NSL+++Y      +  AR VFN+M  ++ +SW ++I G A S   
Sbjct: 346 CMALKLGLDLMLTVSNSLINMYCK-LRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLE 404

Query: 196 YGGLGVFKEMLLEGVEMNPYSFSIAVRACAS-TGWVSFGKLIHAAVIKHGFGSNLPVMNS 254
              + +F ++L  G++ + Y+ +  ++A +S    +S  K IH   IK    ++  V  +
Sbjct: 405 VEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTA 464

Query: 255 ILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS-GSSECLNMFSKMKSERFSPN 313
           ++D Y R  C+ +A   F      DL+ WN +++GY +S    + L +F+ M  +    +
Sbjct: 465 LIDAYSRNRCMKEAEVLFGR-NNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSD 523

Query: 314 CFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFS 373
            FT  +++  C  L A++ G+QVHA  ++ G D +L +++ ++DMY KCG++S +Q  F 
Sbjct: 524 DFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFD 583

Query: 374 EMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDE 433
            +   D V WT+++ G   +G  + A+ +F +M   GV PD      +  A S    +++
Sbjct: 584 SIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQ 643

Query: 434 GLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACK 493
           G +   +    N   +  +   +VD+  + G + +AY L K +    + + W  +L    
Sbjct: 644 GRQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMM-NITAWNAMLVGLA 702

Query: 494 EH--RLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEV 551
           +H      L     +  L +KP+ +    +LS    +    E +   R + R  G K E+
Sbjct: 703 QHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEI 762



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/458 (25%), Positives = 208/458 (45%), Gaps = 45/458 (9%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   +A  L+  Y   G ++E R LF+EMP RDVV W +M+  Y       +A  +    
Sbjct: 185 GDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAF 244

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
             + ++PN  TL                 L+  ++  +   G +    +  D  A   I 
Sbjct: 245 HTSGLHPNEITLR----------------LLSRISGDDSEAGQVKSFENGNDASAVSEI- 287

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
                           +S   +++GY H+G     L  F +M+   +E +  +F + +  
Sbjct: 288 ----------------ISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLAT 331

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
                 ++ G+ +H   +K G    L V NS+++MYC+   +  A   F+ M+E+DLI+W
Sbjct: 332 AVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISW 391

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLA-ALSCGQQVHAGIV 341
           N++IAG  +S    E + +F ++      P+ +T TS++ A ++L   LS  +Q+H   +
Sbjct: 392 NSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAI 451

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           +     +  ++ ALID Y++   + +++ +F   ++ DLV W +MM GY     G + +E
Sbjct: 452 KTNNVADSFVSTALIDAYSRNRCMKEAEVLFGR-NNFDLVAWNAMMSGYTQSHDGHKTLE 510

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE----IYGCVV 457
           LF  M K G R D      VL  C     +++G    K ++ Y +    +    +   ++
Sbjct: 511 LFALMHKQGERSDDFTLATVLKTCGFLFAINQG----KQVHAYAIKSGYDLDLWVSSGIL 566

Query: 458 DLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           D+  + G +  A     S+P  PD+  W  L+  C E+
Sbjct: 567 DMYVKCGDMSAAQFAFDSIPV-PDDVAWTTLISGCIEN 603



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 126/460 (27%), Positives = 215/460 (46%), Gaps = 49/460 (10%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTS-----FNCHNQAWTVFV 101
            L  NLI  Y   G +  AR +FD+MPERD+VSW  ++A Y            +A+ +F 
Sbjct: 82  FLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVENVKEAFLLFR 141

Query: 102 EMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
            + ++ V  +  TLS +LK C     +  +   HG A K GL+G  +V  +L+++Y    
Sbjct: 142 ILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNIYLKFG 201

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
             +   R++F +M +++ V W  ++  Y   G        FKE   E +++         
Sbjct: 202 -KVKEGRVLFEEMPYRDVVLWNLMLKAYLEMG--------FKE---EAIDL--------- 240

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
               S+ + + G  +H   I     S +   +S       F+  +DA+         ++I
Sbjct: 241 ----SSAFHTSG--LHPNEITLRLLSRISGDDSEAGQVKSFENGNDASAV------SEII 288

Query: 282 TWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           + N I++GY  +G  S  L  F  M       +  TF  ++A    L +L+ GQQVH   
Sbjct: 289 SRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMA 348

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           ++ GLD  L ++N+LI+MY K   I  ++ +F+ MS+RDL++W S++ G        EA+
Sbjct: 349 LKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAV 408

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE----IYGCV 456
            LF ++++ G++PD     +VL A S    + EGL   K ++ + +  N      +   +
Sbjct: 409 CLFMQLLRCGLKPDHYTMTSVLKAASS---LPEGLSLSKQIHVHAIKTNNVADSFVSTAL 465

Query: 457 VDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL-GACKEH 495
           +D   R   +KEA  L     F  D   W  ++ G  + H
Sbjct: 466 IDAYSRNRCMKEAEVLFGRNNF--DLVAWNAMMSGYTQSH 503



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 102/204 (50%), Gaps = 6/204 (2%)

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           +R   ST  +  GK  HA ++         ++N+++ MY +   L+ A + FD+M E+DL
Sbjct: 53  LRDAISTSDLMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDL 112

Query: 281 ITWNTIIAGYEKSGS------SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334
           ++WN+I+A Y +S         E   +F  ++ +    +  T + ++  C     +   +
Sbjct: 113 VSWNSILAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASE 172

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
             H    + GLDG+  +A AL+++Y K G + + + +F EM  RD+V W  M+  Y   G
Sbjct: 173 SFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMG 232

Query: 395 HGKEAIELFDEMVKSGVRPDRIVF 418
             +EAI+L      SG+ P+ I  
Sbjct: 233 FKEEAIDLSSAFHTSGLHPNEITL 256



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 91/184 (49%), Gaps = 9/184 (4%)

Query: 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIF 372
            CF F   +    + + L  G+  HA I+    +    L N LI MY+KCG+++ ++++F
Sbjct: 48  QCFGF---LRDAISTSDLMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVF 104

Query: 373 SEMSDRDLVTWTSMMIGYGAHGHG-----KEAIELFDEMVKSGVRPDRIVFMAVLTACSH 427
            +M +RDLV+W S++  Y     G     KEA  LF  + +  V   R+    +L  C H
Sbjct: 105 DKMPERDLVSWNSILAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLH 164

Query: 428 AGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGP 487
           +G V     +        ++ +  + G +V++  + G+VKE   L + MP++ D  +W  
Sbjct: 165 SGYVCASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYR-DVVLWNL 223

Query: 488 LLGA 491
           +L A
Sbjct: 224 MLKA 227



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 130/292 (44%), Gaps = 41/292 (14%)

Query: 137 MAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGY 196
           +A++E  E   ++ N+L+ +Y+ C  S+  AR VF+ M  ++ VSW +++  YA S  G 
Sbjct: 73  LALEENPER--FLVNNLISMYSKCG-SLTYARRVFDKMPERDLVSWNSILAAYAQSSEGV 129

Query: 197 -----GGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251
                    +F+ +  + V  +  + S  ++ C  +G+V   +  H    K G   +  V
Sbjct: 130 VENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFV 189

Query: 252 MNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERF 310
             +++++Y +F  + +    F+EM  +D++ WN ++  Y + G   E +++ S   +   
Sbjct: 190 AGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGL 249

Query: 311 SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQK 370
            PN  T          L +   G    AG V+   +GN A A +                
Sbjct: 250 HPNEITL--------RLLSRISGDDSEAGQVKSFENGNDASAVS---------------- 285

Query: 371 IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
                   ++++   ++ GY   G     ++ F +MV+S +  D++ F+ VL
Sbjct: 286 --------EIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVL 329


>gi|115461454|ref|NP_001054327.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|38345824|emb|CAE01858.2| OSJNBa0070M12.7 [Oryza sativa Japonica Group]
 gi|113565898|dbj|BAF16241.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|215766744|dbj|BAG98972.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222629815|gb|EEE61947.1| hypothetical protein OsJ_16704 [Oryza sativa Japonica Group]
          Length = 690

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 214/604 (35%), Positives = 331/604 (54%), Gaps = 16/604 (2%)

Query: 18  IPPIIKQSLQ-SVKKSSIQSDPPLIPKG---PSILATNLIKSYFDEGLIEEARTLFDEMP 73
           I  +++ S + S  +  +Q    L+  G    ++L  NLI  Y   G +  A  +FD MP
Sbjct: 7   IADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMP 66

Query: 74  ERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAAL 133
           ER+VVSWT ++ G+       +   +F EM  +  +PN FTLS+ LKAC G         
Sbjct: 67  ERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACGG--GTRAGVQ 124

Query: 134 VHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSG 193
           +HG+ ++ G EG   V NSL+ +Y+    + D AR VF+ +  +N  +W ++I+GYAH+G
Sbjct: 125 IHGVCVRTGFEGHDVVANSLVVMYSKGRWTGD-ARRVFDVIPSRNLATWNSMISGYAHAG 183

Query: 194 NGYGGLGVFKEMLLEGVEM-NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGF--GSNLP 250
            G   L VF+EM     E  + ++F+  ++AC+  G    G  +HAA+   G    SN  
Sbjct: 184 QGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAI 243

Query: 251 VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSER 309
           +  ++LD+Y +   L  A Q FD +  ++ I W T+I G+ + G   E + +F +  S  
Sbjct: 244 LAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSG 303

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
              +    +S++A  A  A +  G+QVH    +     ++++AN+L+DMY KCG   ++ 
Sbjct: 304 VRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAG 363

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
           + F EM  R++V+WT+M+ G G HGHG+EAI+LF+EM + GV  D + ++A+L+ACSH+G
Sbjct: 364 RRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQEEGVEADEVAYLALLSACSHSG 423

Query: 430 LVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPL 488
           LVDE  +YF  +  D  + P  E Y C+VDLLGRAG ++EA ELI SMP +P   VW  L
Sbjct: 424 LVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTL 483

Query: 489 LGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSK 548
           L AC+ H+   +G+     +L +  +    Y++LSNI A  G+W E    R  MR  G +
Sbjct: 484 LSACRVHKDVAVGREVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRGAMRRKGLR 543

Query: 549 KEVGMSWIEVRDKVCGFIANDKMGSHTQ---YVYGVLEMLIRHMNETAYEPDIDCLIHDL 605
           K+ G SW EV DK   F       +H Q       + E+  R      Y  D  C +HD+
Sbjct: 544 KQGGCSWTEV-DKEVHFFYGGGDDAHPQAGDIRRALREVEARMRERLGYSGDARCALHDV 602

Query: 606 EGET 609
           + E+
Sbjct: 603 DEES 606


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 204/563 (36%), Positives = 326/563 (57%), Gaps = 10/563 (1%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM-VRNEV 108
           ++L+  Y   G + EAR LFD   E++V+SW  MI GY+       A+ +  +M + ++V
Sbjct: 338 SSLLDMYSKCGYLCEARVLFD-TNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKV 396

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG-LEGSIYVENSLMDVYATCCISMDNA 167
             N  TL +VL  C+          +HG A++ G ++    V N+ +  YA C  S+  A
Sbjct: 397 KVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCG-SLHYA 455

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA--VRACA 225
             VF  M+ K   SW  LI G+  +G     L ++  +L+ G  + P  F+IA  + ACA
Sbjct: 456 EGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLY--LLMRGSGLEPDLFTIASLLSACA 513

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               +S GK IH +++++GF  +  +  S++ +Y +   +  A  +FD M EK+L+ WNT
Sbjct: 514 RLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNT 573

Query: 286 IIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I G+ ++    + L+MF +M S +  P+  +    + AC+ ++AL  G+++H   V+  
Sbjct: 574 MINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSH 633

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           L  +  +  +LIDMYAKCG +  SQ IF  +  +  VTW  ++ GYG HGHG++AIELF 
Sbjct: 634 LTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFK 693

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRA 463
            M  +G RPD + F+A+LTAC+HAGLV EGL+Y   M   + + P  E Y CVVD+LGRA
Sbjct: 694 SMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRA 753

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           GR+ EA EL+  +P KPD  +W  LL +C+ +R  ++G+  A ++L+L P+    Y+++S
Sbjct: 754 GRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVANKLLELGPDKAENYVLIS 813

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           N YA  GKW+E  K R+ M+ +G +K+ G SWIE+  KV  F+  D+    +  +     
Sbjct: 814 NFYARLGKWDEVRKMRQRMKEIGLQKDAGCSWIEIGGKVSRFLVGDESLLQSMKIQQTWI 873

Query: 584 MLIRHMNETAYEPDIDCLIHDLE 606
            L + +N+  Y+PD  C++H+LE
Sbjct: 874 ELEKKINKIGYKPDTSCVLHELE 896



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 120/458 (26%), Positives = 222/458 (48%), Gaps = 9/458 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR- 105
           +L T L+  Y       ++  +F+    +++  W  +++GY   +    A  VFVEM+  
Sbjct: 130 VLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISL 189

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
            E  P+ FTL  V+KAC G+  +     VHG A+K  +   ++V N+L+ +Y      ++
Sbjct: 190 TEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGF-VE 248

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLL--EGVEMNPYSFSIAVRA 223
           +A  VF+ M  +N VSW +++     +G      G+FK +L   EG+  +  +    +  
Sbjct: 249 SAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPL 308

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           CA  G V  G + H   +K G    L V +S+LDMY +   L +A   FD   EK++I+W
Sbjct: 309 CARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFD-TNEKNVISW 367

Query: 284 NTIIAGYEKSGSSE-CLNMFSKMKSE-RFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           N++I GY K         +  KM+ E +   N  T  +++  C         +++H   +
Sbjct: 368 NSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYAL 427

Query: 342 RRG-LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           R G +  +  +ANA +  YAKCG++  ++ +F  M  + + +W +++ G+  +G  ++A+
Sbjct: 428 RHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKAL 487

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLL 460
           +L+  M  SG+ PD     ++L+AC+    +  G +   SM       ++ I   +V L 
Sbjct: 488 DLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLY 547

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLP 498
            + G++  A     +M  K +   W  ++    ++  P
Sbjct: 548 VQCGKILLAKLFFDNMEEK-NLVCWNTMINGFSQNEFP 584



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 115/451 (25%), Positives = 209/451 (46%), Gaps = 46/451 (10%)

Query: 28  SVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGY 87
           +++   IQSD         ++A   +  Y   G +  A  +F  M  + V SW  +I G+
Sbjct: 426 ALRHGFIQSD--------ELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGH 477

Query: 88  TSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSI 147
                  +A  +++ M  + + P+ FT++S+L AC  +KSLS    +HG  ++ G E   
Sbjct: 478 VQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDE 537

Query: 148 YVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLL 207
           ++  SL+ +Y  C   +  A+L F++M+ KN V W T+I G++ +   +  L +F +ML 
Sbjct: 538 FICISLVSLYVQCG-KILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLS 596

Query: 208 EGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSD 267
             +  +  S   A+ AC+    +  GK +H   +K     +  V  S++DMY +  C+  
Sbjct: 597 SKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQ 656

Query: 268 ANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACAT 326
           +   FD +  K  +TWN +I GY   G   + + +F  M++  F P+  TF +++ AC  
Sbjct: 657 SQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACN- 715

Query: 327 LAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSM 386
                     HAG+V  GL+  L    +L  +  K                  L  +  +
Sbjct: 716 ----------HAGLVAEGLE-YLGQMQSLFGIKPK------------------LEHYACV 746

Query: 387 MIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV 446
           +   G  G   EA+EL +E+     +PD  ++ ++L++C +   +D G K    +    +
Sbjct: 747 VDMLGRAGRLNEALELVNELPD---KPDSRIWSSLLSSCRNYRDLDIGEKVANKL--LEL 801

Query: 447 NPNK-EIYGCVVDLLGRAGRVKEAYELIKSM 476
            P+K E Y  + +   R G+  E  ++ + M
Sbjct: 802 GPDKAENYVLISNFYARLGKWDEVRKMRQRM 832



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 162/315 (51%), Gaps = 10/315 (3%)

Query: 118 VLKACKGMKSLSNAALVHG-MAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW 176
           +L+ C   K++     +H  ++     +  + +   L+ +Y+ C    D+  LVFN  + 
Sbjct: 99  LLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSC-LVFNASRR 157

Query: 177 KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI--AVRACASTGWVSFGK 234
           KN   W  L++GY  +      + VF EM+    E  P +F++   ++AC     V  G+
Sbjct: 158 KNLFLWNALLSGYLRNSLFRDAVFVFVEMI-SLTEFVPDNFTLPCVIKACVGVYDVRLGE 216

Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII-AGYEKS 293
            +H   +K    S++ V N+++ MY +F  +  A + FD+M +++L++WN+++ A  E  
Sbjct: 217 AVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENG 276

Query: 294 GSSECLNMFSKMKS--ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLAL 351
              E   +F  + +  E   P+  T  ++I  CA    +  G   H   ++ GL G L +
Sbjct: 277 VFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKV 336

Query: 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM-VKSG 410
            ++L+DMY+KCG + +++ +F + +++++++W SM+ GY      + A EL  +M ++  
Sbjct: 337 NSSLLDMYSKCGYLCEARVLF-DTNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDK 395

Query: 411 VRPDRIVFMAVLTAC 425
           V+ + +  + VL  C
Sbjct: 396 VKVNEVTLLNVLPVC 410



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 151/328 (46%), Gaps = 8/328 (2%)

Query: 219 IAVRACASTGWVSFGKLIHAAV-IKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE 277
           + ++ C     +  G+ IH  +     F +++ ++  ++ MY   D   D+   F+    
Sbjct: 98  LLLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRR 157

Query: 278 KDLITWNTIIAGY-EKSGSSECLNMFSKMKS-ERFSPNCFTFTSIIAACATLAALSCGQQ 335
           K+L  WN +++GY   S   + + +F +M S   F P+ FT   +I AC  +  +  G+ 
Sbjct: 158 KNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEA 217

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
           VH   ++  +  ++ + NALI MY K G +  + K+F +M  R+LV+W S+M     +G 
Sbjct: 218 VHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGV 277

Query: 396 GKEAIELFDEMVK--SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIY 453
            +E+  LF  ++    G+ PD    + V+  C+  G V  G+ +        +    ++ 
Sbjct: 278 FEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVN 337

Query: 454 GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513
             ++D+  + G + EA  L  +   + +   W  ++G   + R    G    LR + ++ 
Sbjct: 338 SSLLDMYSKCGYLCEARVLFDTN--EKNVISWNSMIGGYSKDR-DFRGAFELLRKMQMED 394

Query: 514 NMMGTYIILSNIYAAEGKWEEFAKFRKI 541
            +    + L N+     +  +F K ++I
Sbjct: 395 KVKVNEVTLLNVLPVCEEEIQFLKLKEI 422


>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 939

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 188/563 (33%), Positives = 321/563 (57%), Gaps = 4/563 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + T  +  Y   G + +A+ +F+ +P+  +  +  +I G        +A   F  ++++ 
Sbjct: 314 VGTATLDMYAKCGSLADAQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSG 373

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           +  N  +LS    AC  +K   +   +H +++K  L  +I V NS++D+Y  C  ++  A
Sbjct: 374 LGFNEISLSGAFSACASIKGDLDGRQLHSLSVKSTLRSNICVANSILDMYGKC-EALSEA 432

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             +F++M+ ++ VSW  +I  +  +GN    L +F  ML   +E + +++   ++AC+S 
Sbjct: 433 CCMFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQ 492

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             ++ G  IH  +IK G G +  V  +++DMYC+   + +A +  D + ++ +++WN II
Sbjct: 493 QALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAII 552

Query: 288 AGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           AG+     SE   + F +M      P+ FT+  ++ ACA LA++  G+Q+H  I++  L 
Sbjct: 553 AGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQIHGQIIKLELH 612

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            ++ + + L+DMY+KCGN+ DS  +F +  ++D VTW +M+ GY  HG G+EA+  F+ M
Sbjct: 613 SDVYITSTLVDMYSKCGNMQDSALVFEKAPNKDFVTWNAMICGYAQHGLGEEALGYFERM 672

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGR 465
               VRP+   F+++L AC+H G +D+GL YF +M  +Y + P  E Y C++D++GR+GR
Sbjct: 673 QLENVRPNHATFVSILRACAHMGFIDKGLHYFNAMLTEYGLEPQIEHYSCMIDIIGRSGR 732

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           + EA +LI+ MPF+ D  +W  LL  CK H    + + A   +L L+P      I+LSNI
Sbjct: 733 ISEALKLIQEMPFEADAVIWRTLLSICKIHGNIEIAEKATNAILQLEPEDSSACILLSNI 792

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           YA  G W + ++ RK+MR    KKE G SWIEV+D+V  F+  +K     + +Y +L +L
Sbjct: 793 YADAGMWGKVSEMRKMMRYNKLKKEPGCSWIEVKDEVHAFLVGNKTHPRYEEIYKILSVL 852

Query: 586 IRHMNETAYEPDIDCLIHDLEGE 608
           +  M    Y PDID LI D E E
Sbjct: 853 LDEMKWIGYIPDIDFLI-DEESE 874



 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 137/471 (29%), Positives = 250/471 (53%), Gaps = 5/471 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +  + L+  Y     ++++  +F E+P ++ V W+ +IAG    + H     +F EM + 
Sbjct: 212 VTGSALLDMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKV 271

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            +  +    +SV ++C G+ +L     +H  A+K      I V  + +D+YA C  S+ +
Sbjct: 272 GIGVSQSIYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCG-SLAD 330

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A+ +FN +   +   +  +I G   +  G+  L  F+ +L  G+  N  S S A  ACAS
Sbjct: 331 AQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACAS 390

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
                 G+ +H+  +K    SN+ V NSILDMY + + LS+A   FDEM  +D ++WN +
Sbjct: 391 IKGDLDGRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAV 450

Query: 287 IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           IA +E++G+  E LN+F+ M   R  P+ FT+ S++ AC++  AL+ G ++H  I++ GL
Sbjct: 451 IAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGL 510

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             +  +  ALIDMY KCG I +++KI   +  + +V+W +++ G+    H ++A   F E
Sbjct: 511 GLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYE 570

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M+K  V+PD   +  VL AC++   V  G +    +    ++ +  I   +VD+  + G 
Sbjct: 571 MLKMSVKPDNFTYAIVLDACANLASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCGN 630

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPN 514
           ++++  + +  P K D   W  ++    +H L    LG    +++ +++PN
Sbjct: 631 MQDSALVFEKAPNK-DFVTWNAMICGYAQHGLGEEALGYFERMQLENVRPN 680



 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 135/499 (27%), Positives = 247/499 (49%), Gaps = 39/499 (7%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN-EVN 109
            +I  Y D G +  A   F + P+RDVVSW  M++G+       ++  VF++M R+ EV 
Sbjct: 114 TMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFLDMGRSEEVG 173

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
            +  T + VLKAC  ++       VHG+ ++ G    +   ++L+D+YA  C  +D++  
Sbjct: 174 FDQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAK-CKRLDDSLK 232

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           +F+++  KN V W+ +I G   +     GL +FKEM   G+ ++   ++   R+CA    
Sbjct: 233 IFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLSA 292

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           +  G  +HA  +K  FGS++ V  + LDMY +   L+DA + F+ + +  L  +N II G
Sbjct: 293 LKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQCYNAIIVG 352

Query: 290 YEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
             ++    E L  F  +       N  + +   +ACA++     G+Q+H+  V+  L  N
Sbjct: 353 CVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLHSLSVKSTLRSN 412

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           + +AN+++DMY KC  +S++  +F EM  RD V+W +++  +  +G+ +E + LF  M++
Sbjct: 413 ICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFASMLR 472

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKE 468
             + PD+  + +VL ACS    ++ G++    +    +  +  + G ++D+  + G ++E
Sbjct: 473 LRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEE 532

Query: 469 A-----------------------------------YELIKSMPFKPDESVWGPLLGACK 493
           A                                   YE++K M  KPD   +  +L AC 
Sbjct: 533 AKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLK-MSVKPDNFTYAIVLDACA 591

Query: 494 EHRLPNLGKLAALRVLDLK 512
                 LGK    +++ L+
Sbjct: 592 NLASVGLGKQIHGQIIKLE 610



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 116/493 (23%), Positives = 225/493 (45%), Gaps = 39/493 (7%)

Query: 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFND 173
           T S +++ C    SL      H   I  G    +Y+ N LM +Y  C   ++ A  VF  
Sbjct: 45  TFSHIIQECSDYNSLKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCS-HLNYAYKVFEK 103

Query: 174 MKWKNDVSWTTLITGYAHSG-----------------------------NG--YGGLGVF 202
           M  ++ +S+ T+I+GYA +G                             NG     + VF
Sbjct: 104 MSQRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVF 163

Query: 203 KEM-LLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR 261
            +M   E V  +  +F++ ++AC+       G  +H  +++ GF  ++   +++LDMY +
Sbjct: 164 LDMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAK 223

Query: 262 FDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSEC-LNMFSKMKSERFSPNCFTFTSI 320
              L D+ + F E+  K+ + W+ IIAG  ++      L +F +M+      +   + S+
Sbjct: 224 CKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASV 283

Query: 321 IAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDL 380
             +CA L+AL  G Q+HA  ++     ++ +  A +DMYAKCG+++D+Q+IF+ +    L
Sbjct: 284 FRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSL 343

Query: 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS 440
             + ++++G   +  G EA++ F  ++KSG+  + I      +AC+      +G +    
Sbjct: 344 QCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLHSL 403

Query: 441 MNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKE--HRLP 498
                +  N  +   ++D+ G+   + EA  +   M  + D   W  ++ A ++  +   
Sbjct: 404 SVKSTLRSNICVANSILDMYGKCEALSEACCMFDEME-RRDAVSWNAVIAAHEQNGNEEE 462

Query: 499 NLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMR-GMGSKKEVGMSWIE 557
            L   A++  L ++P+      +L    + +          +I++ G+G    VG + I+
Sbjct: 463 TLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALID 522

Query: 558 VRDKVCGFIANDK 570
           +  K CG I   K
Sbjct: 523 MYCK-CGMIEEAK 534



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/269 (31%), Positives = 140/269 (52%), Gaps = 6/269 (2%)

Query: 25  SLQSVKKSSIQSDPPLIPKG---PSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWT 81
           S Q    S ++    +I  G    S +   LI  Y   G+IEEA+ + D + ++ +VSW 
Sbjct: 490 SSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWN 549

Query: 82  VMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKE 141
            +IAG+T       A + F EM++  V P+ FT + VL AC  + S+     +HG  IK 
Sbjct: 550 AIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQIHGQIIKL 609

Query: 142 GLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGV 201
            L   +Y+ ++L+D+Y+ C  +M ++ LVF     K+ V+W  +I GYA  G G   LG 
Sbjct: 610 ELHSDVYITSTLVDMYSKCG-NMQDSALVFEKAPNKDFVTWNAMICGYAQHGLGEEALGY 668

Query: 202 FKEMLLEGVEMNPYSFSIAVRACASTGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYC 260
           F+ M LE V  N  +F   +RACA  G++  G    +A + ++G    +   + ++D+  
Sbjct: 669 FERMQLENVRPNHATFVSILRACAHMGFIDKGLHYFNAMLTEYGLEPQIEHYSCMIDIIG 728

Query: 261 RFDCLSDANQYFDEMT-EKDLITWNTIIA 288
           R   +S+A +   EM  E D + W T+++
Sbjct: 729 RSGRISEALKLIQEMPFEADAVIWRTLLS 757


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 197/626 (31%), Positives = 327/626 (52%), Gaps = 69/626 (11%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
           +L+  +   G + +AR +F EMPERD VSWTVM+ G        +A    ++M  +   P
Sbjct: 103 SLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTP 162

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS------- 163
             FTL++VL +C   ++ +    VH   +K GL   + V NS++++Y  C  +       
Sbjct: 163 TQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVF 222

Query: 164 -----------------------MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLG 200
                                  MD A  +F  M  ++ VSW  +I GY  +G     L 
Sbjct: 223 ERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALK 282

Query: 201 VFKEMLLEGVEMNPYSFSIA--VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDM 258
           +F  ML E   M P  F+I   + ACA+ G V  GK +HA +++     N  V N+++  
Sbjct: 283 LFSRMLHES-SMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALIST 341

Query: 259 YCRFDCLSDANQYFDE---------------------------------MTEKDLITWNT 285
           Y +   + +A +  D+                                 M  +D++ W  
Sbjct: 342 YAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTA 401

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I GYE++G + E +++F  M +    PN +T  ++++ CA+LA L  G+Q+H   +R  
Sbjct: 402 MIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSL 461

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHGHGKEAIELF 403
           L+ + +++NA+I MYA+ G+   ++++F ++  R + +TWTSM++    HG G+EA+ LF
Sbjct: 462 LERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLF 521

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGR 462
           +EM+++GV PDRI ++ VL+ACSHAG V+EG +Y+  + N++ + P    Y C+VDLL R
Sbjct: 522 EEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLAR 581

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AG   EA E I+ MP +PD   WG LL AC+ H+   L +LAA ++L + PN  G Y  +
Sbjct: 582 AGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAI 641

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           +N+Y+A G+W + A+  K  +    +KE G SW  +R K+  F A+D +      VY + 
Sbjct: 642 ANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMA 701

Query: 583 EMLIRHMNETAYEPDIDCLIHDLEGE 608
             +   +    + PD+  ++HD++ E
Sbjct: 702 ARMWEEIKGAGFVPDLQSVLHDVDDE 727



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 116/482 (24%), Positives = 209/482 (43%), Gaps = 102/482 (21%)

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC-------------- 161
           + +L+ C+   +      +H  A+K GL  S Y+ N+L+  Y                  
Sbjct: 30  ARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFD 89

Query: 162 ---------------ISM-------DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGL 199
                          +SM        +AR VF +M  ++ VSWT ++ G   +G     +
Sbjct: 90  EIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAI 149

Query: 200 GVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMY 259
               +M  +G     ++ +  + +CA T   + G+ +H+ V+K G GS +PV NS+L+MY
Sbjct: 150 KTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMY 209

Query: 260 CR-------------------------------FDCLSDANQYFDEMTEKDLITWNTIIA 288
            +                                  +  A   F+ M  + +++WN +IA
Sbjct: 210 GKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIA 269

Query: 289 GYEKSG-SSECLNMFSKMKSE-RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           GY ++G  ++ L +FS+M  E   +P+ FT TS+++ACA L  +  G+QVHA I+R  + 
Sbjct: 270 GYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMA 329

Query: 347 GNLALANALIDMYAKCGNISDSQKI---------------------------------FS 373
            N  + NALI  YAK G++ ++++I                                 F 
Sbjct: 330 YNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFG 389

Query: 374 EMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDE 433
            M++RD+V WT+M++GY  +G   EAI+LF  M+  G  P+     AVL+ C+    +D 
Sbjct: 390 VMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDY 449

Query: 434 GLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACK 493
           G +         +  +  +   ++ +  R+G    A  +   + ++ +   W  ++ A  
Sbjct: 450 GKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALA 509

Query: 494 EH 495
           +H
Sbjct: 510 QH 511



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 109/467 (23%), Positives = 198/467 (42%), Gaps = 69/467 (14%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDV------------------------------ 77
           +A +++  Y   G  E A T+F+ MP R V                              
Sbjct: 201 VANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRS 260

Query: 78  -VSWTVMIAGYTSFNCHNQAWTVFVEMV-RNEVNPNAFTLSSVLKACKGMKSLSNAALVH 135
            VSW  MIAGY       +A  +F  M+  + + P+ FT++SVL AC  + ++     VH
Sbjct: 261 IVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVH 320

Query: 136 GMAIKEGLEGSIYVENSLMDVYATC-------------------CIS------------- 163
              ++  +  +  V N+L+  YA                      IS             
Sbjct: 321 AYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGD 380

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           M++AR +F  M  ++ V+WT +I GY  +G     + +F+ M+  G E N Y+ +  +  
Sbjct: 381 MESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSV 440

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLIT 282
           CAS   + +GK IH   I+     +  V N+I+ MY R      A + FD++   K+ IT
Sbjct: 441 CASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETIT 500

Query: 283 WNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           W ++I    + G   E + +F +M      P+  T+  +++AC+    ++ G++ +  I 
Sbjct: 501 WTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIK 560

Query: 342 -RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEA 399
               +   ++    ++D+ A+ G  S++Q+    M  + D + W S++     H +  E 
Sbjct: 561 NEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNA-EL 619

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV 446
            EL  E + S    +   + A+    S  G   +  + +K+  +  V
Sbjct: 620 AELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAV 666


>gi|222632692|gb|EEE64824.1| hypothetical protein OsJ_19680 [Oryza sativa Japonica Group]
          Length = 688

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 216/592 (36%), Positives = 320/592 (54%), Gaps = 32/592 (5%)

Query: 36  SDPPLIPKGPSILATNLIKS-----------------YFDEGLIEEARTLFDEMPERDVV 78
           S PPL P  P +L+  + KS                  F  G +  A  +FDEMP ++VV
Sbjct: 85  SSPPLAPADPFVLSL-VFKSCAAAADARFLPHAASLHAFAAGCLGLALKVFDEMPHKNVV 143

Query: 79  SWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMA 138
           SWT ++A  T     ++A   F EM  + V+ +++  ++ L AC     LS    VH   
Sbjct: 144 SWTTLVASLTRAGRRHEALRRFSEMRASGVHCDSYAYAAALTACADAGLLSRGREVHAFC 203

Query: 139 IKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGG 198
            K GL+ + YV N+L  +YA C   +D A    + M  ++  +WTT+I+ Y  +G     
Sbjct: 204 AKLGLDSTPYVANTLATLYARCS-DVDRALAAVSRMGTRDVAAWTTVISAYVQTGRAKEA 262

Query: 199 LGVFKEMLLE----GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNS 254
           +  F  ML E        N Y+++  + ACA   WV  G+ +HA   + GF     V NS
Sbjct: 263 IEAFVRMLREESSVAASPNEYTYAAVIAACADIAWVCLGEQLHAQAARKGFACARSVANS 322

Query: 255 ILDMYCRF-DCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERF-- 310
           ++ +Y R   CLS A+  F E   KD+++W+ II+GY + G +E    +F +M+      
Sbjct: 323 LVTLYTRAAGCLSAADAVFRESVVKDVVSWSAIISGYAQEGLAEDAFALFREMRHHSGCP 382

Query: 311 SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQK 370
            PN FT  S+++ CAT A+L  G+Q+H   V  GL+ +  + +ALIDMY K G++ D+  
Sbjct: 383 RPNEFTLASLLSVCATAASLDAGRQLHTLAVAAGLEHHAMIRSALIDMYGKSGSMLDADI 442

Query: 371 IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           +FS     D+V+WT+M++GY  HGH K+A+ELF EM   G++PD + F+ VL AC HAG 
Sbjct: 443 VFSHRVKDDVVSWTAMIVGYAEHGHSKKALELFQEMCHVGLKPDHVTFIGVLNACCHAGE 502

Query: 431 VDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELI-KSMPFKPDESVWGPL 488
           V+ GL+Y   MN  Y + P KE YGCVVDLLGRAGR+ EA ELI K    + D  VW  L
Sbjct: 503 VELGLRYLNEMNQIYGLYPAKEHYGCVVDLLGRAGRINEAEELIGKIAANERDGVVWTSL 562

Query: 489 LGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSK 548
           L AC        GK AA R ++ +P   G ++ ++N+YA++G+W E A+ R +M+  G  
Sbjct: 563 LRACAARGEEETGKKAAERAMEAEPWGAGAHVAMANLYASKGQWHEAAQERHMMKQKGVV 622

Query: 549 KEVGMSWIEV---RDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPD 597
           K  G S I V     +V  F+A+D+       +Y +LE++        Y PD
Sbjct: 623 KGAGWSSITVGGEGRRVGVFVASDRTHPQDSAIYRMLELIYFGTGMARYVPD 674



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 138/486 (28%), Positives = 237/486 (48%), Gaps = 46/486 (9%)

Query: 27  QSVKKSSIQSDPPLIPKGPSILATNL--IKSYFDEGLIEEARTLFDEMPERDVVSWTVMI 84
           +SV   +++ DPP     P  +  +L  +K       + +A  LFD MP RD V++  ++
Sbjct: 9   RSVWTRAVRPDPP-----PLSMLDHLARLKQLARSSRLADAHRLFDGMPRRDEVAYATLL 63

Query: 85  AGYTSFNCHNQAWTVFVEMVRNEVNP----NAFTLSSVLKACKG---MKSLSNAALVHGM 137
           AG+ +      A  +F  + R    P    + F LS V K+C      + L +AA +H  
Sbjct: 64  AGHAAAGDFPGAMALFSRL-RASSPPLAPADPFVLSLVFKSCAAAADARFLPHAASLHA- 121

Query: 138 AIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYG 197
                              +A  C+ +  A  VF++M  KN VSWTTL+     +G  + 
Sbjct: 122 -------------------FAAGCLGL--ALKVFDEMPHKNVVSWTTLVASLTRAGRRHE 160

Query: 198 GLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILD 257
            L  F EM   GV  + Y+++ A+ ACA  G +S G+ +HA   K G  S   V N++  
Sbjct: 161 ALRRFSEMRASGVHCDSYAYAAALTACADAGLLSRGREVHAFCAKLGLDSTPYVANTLAT 220

Query: 258 MYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSER----FSP 312
           +Y R   +  A      M  +D+  W T+I+ Y ++G + E +  F +M  E      SP
Sbjct: 221 LYARCSDVDRALAAVSRMGTRDVAAWTTVISAYVQTGRAKEAIEAFVRMLREESSVAASP 280

Query: 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK-CGNISDSQKI 371
           N +T+ ++IAACA +A +  G+Q+HA   R+G     ++AN+L+ +Y +  G +S +  +
Sbjct: 281 NEYTYAAVIAACADIAWVCLGEQLHAQAARKGFACARSVANSLVTLYTRAAGCLSAADAV 340

Query: 372 FSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV-KSGV-RPDRIVFMAVLTACSHAG 429
           F E   +D+V+W++++ GY   G  ++A  LF EM   SG  RP+     ++L+ C+ A 
Sbjct: 341 FRESVVKDVVSWSAIISGYAQEGLAEDAFALFREMRHHSGCPRPNEFTLASLLSVCATAA 400

Query: 430 LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
            +D G +         +  +  I   ++D+ G++G + +A +++ S   K D   W  ++
Sbjct: 401 SLDAGRQLHTLAVAAGLEHHAMIRSALIDMYGKSGSMLDA-DIVFSHRVKDDVVSWTAMI 459

Query: 490 GACKEH 495
               EH
Sbjct: 460 VGYAEH 465


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 204/569 (35%), Positives = 318/569 (55%), Gaps = 39/569 (6%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           + PS L   L+++Y   G    AR +FD +PER+V+ + VMI  Y + + ++ A  VF +
Sbjct: 65  ENPS-LGIKLMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRD 123

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-C 161
           MV    +P+ +T   VLKAC    +L     +HG   K GL+ +++V N L+ +Y  C C
Sbjct: 124 MVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGC 183

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
           +    AR V ++M+ K+ VSW +++ GYA +      L + +EM  +GV   P + ++A 
Sbjct: 184 LP--EARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREM--DGVRQKPDACTMAS 239

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
              A T   S   L                                  + F  + +K L+
Sbjct: 240 LLPAVTNTSSENVLY-------------------------------VEEMFMNLEKKSLV 268

Query: 282 TWNTIIAGYEK-SGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           +WN +I+ Y K S   + ++++ +M      P+  T  S++ AC  L+AL  G+++H  +
Sbjct: 269 SWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYV 328

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
            R+ L  N+ L N+LIDMYA+CG + D++++F  M  RD+ +WTS++  YG  G G  A+
Sbjct: 329 ERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQGYNAV 388

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDL 459
            LF EM  SG  PD I F+A+L+ACSH+GL++EG  YFK M +DY + P  E + C+VDL
Sbjct: 389 ALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYKITPIIEHFACLVDL 448

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
           LGR+GRV EAY +IK MP KP+E VWG LL +C+ +   ++G LAA ++L L P   G Y
Sbjct: 449 LGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCRVYSNMDIGILAADKLLQLAPEESGYY 508

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVY 579
           ++LSNIYA  G+W E    R +M+    +K  G+S +E+ ++V  F+A D     ++ +Y
Sbjct: 509 VLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISNVELNNQVHTFLAGDTYHPQSKEIY 568

Query: 580 GVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
             L +L+  M E  Y P  D  +HD+E E
Sbjct: 569 EELSVLVGKMKELGYVPKTDSALHDVEEE 597



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 105/209 (50%), Gaps = 3/209 (1%)

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
           K +H+ V    F  N  +   ++  Y        A   FD + E+++I +N +I  Y  +
Sbjct: 52  KNVHSKVFNLSFHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNN 111

Query: 294 G-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
               + L +F  M S  FSP+ +T+  ++ AC+    L  G Q+H  + + GLD NL + 
Sbjct: 112 HLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVG 171

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
           N LI +Y KCG + +++ +  EM  +D+V+W SM+ GY  +    +A+++  EM     +
Sbjct: 172 NGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQK 231

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSM 441
           PD     ++L A ++     E + Y + M
Sbjct: 232 PDACTMASLLPAVTNTS--SENVLYVEEM 258


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 200/581 (34%), Positives = 320/581 (55%), Gaps = 32/581 (5%)

Query: 60  GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119
           G I  A +LF+ + E ++  W  MI G +       A   FV M+ + V PN++T   +L
Sbjct: 77  GDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLL 136

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA--------------------- 158
           K+C  + S      +H   +K G    +++  SL+++YA                     
Sbjct: 137 KSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAI 196

Query: 159 --TCCIS-------MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG 209
             T  I+       MD AR +F++M  K+ VSW  +I GYA  G     L +F++M    
Sbjct: 197 SFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKAN 256

Query: 210 VEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDAN 269
           V  N  +    + ACA +  +  G  + + +   G  SNL ++N+++DMY +   L  A 
Sbjct: 257 VPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTAR 316

Query: 270 QYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLA 328
           + FD+M E+D+I+WN +I GY    S  E L +F +M +    P   TF SI+ +CA L 
Sbjct: 317 ELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLG 376

Query: 329 ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMI 388
           A+  G+ +HA I +     + +L+ +LID+YAKCGNI  ++++F  M  + L +W +M+ 
Sbjct: 377 AIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMIC 436

Query: 389 GYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVN 447
           G   HG   +A ELF +M   G+ P+ I F+ +L+AC HAGLVD G ++F SM  DY ++
Sbjct: 437 GLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKIS 496

Query: 448 PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALR 507
           P  + YGC++DLLGRAG  +EA  L+++M  KPD ++WG LLGAC++H    LG+L A R
Sbjct: 497 PKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAER 556

Query: 508 VLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIA 567
           + +L+P+  G Y++LSNIYA  GKW++ A+ R  +   G KK  G + IEV + V  F+ 
Sbjct: 557 LFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLV 616

Query: 568 NDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
            DK+   ++ +Y +LE +   +    +  D   +++D++ E
Sbjct: 617 GDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEE 657



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 129/412 (31%), Positives = 209/412 (50%), Gaps = 39/412 (9%)

Query: 118 VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNARLVFNDMKW 176
           +L  C+ +++      +H   IK GL  +++  + L++  A      +  A  +FN ++ 
Sbjct: 35  LLSKCQSIRTFKQ---IHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEE 91

Query: 177 KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLI 236
            N   W ++I G + S +    L  F  M+  GVE N Y+F   +++CA       GK I
Sbjct: 92  PNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQI 151

Query: 237 HAAVIKHGFGSNLPVMNSILDMYCR----------FD---------------------CL 265
           HA V+K GF S++ +  S+++MY +          FD                      +
Sbjct: 152 HAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYM 211

Query: 266 SDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAAC 324
             A Q FDEM  KD+++WN +IAGY + G S E L +F  M+     PN  T  S+++AC
Sbjct: 212 DRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSAC 271

Query: 325 ATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWT 384
           A   AL  G  + + I  RGL  NL L NALIDMY+KCG++  ++++F +M +RD+++W 
Sbjct: 272 AQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWN 331

Query: 385 SMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDY 444
            M+ GY      KEA+ LF EM+ SGV P  I F+++L +C+H G +D G K+  +  + 
Sbjct: 332 VMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLG-KWIHAYINK 390

Query: 445 NVN-PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           N N  +  +   ++DL  + G +  A ++   M  K   S W  ++     H
Sbjct: 391 NFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLAS-WNAMICGLAMH 441



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 128/416 (30%), Positives = 203/416 (48%), Gaps = 10/416 (2%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           +I  T LI  Y   G ++ AR LFDEMP +DVVSW  MIAGY       +A  +F +M +
Sbjct: 195 AISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRK 254

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             V PN  T+ SVL AC    +L     +       GL  ++ + N+L+D+Y+ C   + 
Sbjct: 255 ANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCG-DLQ 313

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            AR +F+DM  ++ +SW  +I GY H  +    L +F+EML  GVE    +F   + +CA
Sbjct: 314 TARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCA 373

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
             G +  GK IHA + K+    +  +  S++D+Y +   +  A Q FD M  K L +WN 
Sbjct: 374 HLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNA 433

Query: 286 IIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR- 343
           +I G    G ++    +FSKM S+   PN  TF  I++AC     +  GQQ  + +V+  
Sbjct: 434 MICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDY 493

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHGHGKEAIEL 402
            +         +ID+  + G   +++ +   M  + D   W S++     HG   E  EL
Sbjct: 494 KISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGR-VELGEL 552

Query: 403 FDEMVKSGVRPDRIVFMAVLTAC-SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVV 457
             E +   + PD      +L+   + AG  D+  +    +ND  +   K++ GC  
Sbjct: 553 VAERLFE-LEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGM---KKVPGCTT 604


>gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Brachypodium distachyon]
          Length = 822

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 194/548 (35%), Positives = 303/548 (55%), Gaps = 3/548 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y     +  AR LFD M  R++VSWT MIAGY   +C  +A  +F ++ +    P+
Sbjct: 256 LIDLYCKCSRLSLARKLFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPD 315

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
            F  +S+L +C  + ++     VH  AIK  LE   YV+NSL+D+YA C   +  AR VF
Sbjct: 316 VFACASILNSCGSLAAIWQGRQVHAHAIKANLESDEYVKNSLIDMYAKC-EHLTEARAVF 374

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
             +   + +S+  +I GY+  G+  G + VF +M    ++ +P +F   +   +S   + 
Sbjct: 375 EALAEDDAISYNAMIEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIE 434

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY- 290
             K IH  ++K G   +L   +S++D+Y +F  + DA   F+ M  +D++ WN +I G  
Sbjct: 435 LSKQIHGLIVKSGTSLDLYAGSSLIDVYSKFSLVEDAKAVFNLMHNRDMVIWNAMIFGLA 494

Query: 291 EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           +     E + +F++++    +PN FTF +++   +TL ++  GQQ HA I++ G D +  
Sbjct: 495 QNEQGEEAVKLFNQLQVSGLAPNEFTFVALVTVASTLVSMFHGQQFHAQIIKAGADSDHH 554

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           ++NALIDMYAKCG I + + +F     +D++ W SM+  Y  HG  +EA+ +F  M  +G
Sbjct: 555 VSNALIDMYAKCGFIKEGRLLFESTLGKDVICWNSMISTYAQHGQAEEALYVFRMMGGTG 614

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
           V P+ + F+ VL+AC+HAGLVDEGL++F  M   Y + P  E Y  VV+L GR+G++  A
Sbjct: 615 VEPNYVTFVGVLSACAHAGLVDEGLRHFDFMKTKYAIEPGTEHYASVVNLFGRSGKLHAA 674

Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529
            E I+ MP +P  +VW  LL AC       +G+ A    L   P   G  +++SNIYA+ 
Sbjct: 675 KEFIERMPIEPAAAVWRSLLSACHLFGNVEIGRYATEMALLADPADSGPSVLMSNIYASR 734

Query: 530 GKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHM 589
           G W +  K R+ M   G  KE G SWIEV  +V  FIA  +       +Y +L+ L   +
Sbjct: 735 GLWSDAQKLRQGMDCAGVVKEPGYSWIEVMKEVHTFIARGREHPEADVIYSLLDELTSIL 794

Query: 590 NETAYEPD 597
               Y PD
Sbjct: 795 KNGGYLPD 802



 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 159/533 (29%), Positives = 288/533 (54%), Gaps = 13/533 (2%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            LA  L+++Y   G + +AR LFD MP +++VSW   I+ +    C   A  +F    R 
Sbjct: 47  FLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGCEEDAVALFAAFQRA 106

Query: 107 EVN--PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CIS 163
                PN F L+S L+AC   +++S    VHG+A++ GL+G++YV  +L+++YA   CI 
Sbjct: 107 SGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYVGTALINLYAKVGCI- 165

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
            D A LVF+ +  KN V+WT +ITGY+  G G   L +F +M L+GV  + +  + AV A
Sbjct: 166 -DAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVRPDRFVLASAVSA 224

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C++ G++  G+  H    +    ++  V+N+++D+YC+   LS A + FD M  ++L++W
Sbjct: 225 CSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSLARKLFDCMENRNLVSW 284

Query: 284 NTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
            T+IAGY + S  +E + MF ++  E + P+ F   SI+ +C +LAA+  G+QVHA  ++
Sbjct: 285 TTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGSLAAIWQGRQVHAHAIK 344

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
             L+ +  + N+LIDMYAKC ++++++ +F  +++ D +++ +M+ GY   G    AI++
Sbjct: 345 ANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYSRLGDLAGAIDV 404

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           F +M    ++P  + F+++L   S    ++   +    +     + +      ++D+  +
Sbjct: 405 FSKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQIHGLIVKSGTSLDLYAGSSLIDVYSK 464

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLL-GACKEHRLPNLGKL-AALRVLDLKPNMMGTYI 520
              V++A  +   M  + D  +W  ++ G  +  +     KL   L+V  L PN   T++
Sbjct: 465 FSLVEDAKAVFNLMHNR-DMVIWNAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNEF-TFV 522

Query: 521 ILSNIYAAEGKWEEFAKFRK--IMRGMGSKKEVGMSWIEVRDKVCGFIANDKM 571
            L  + +         +F    I  G  S   V  + I++  K CGFI   ++
Sbjct: 523 ALVTVASTLVSMFHGQQFHAQIIKAGADSDHHVSNALIDMYAK-CGFIKEGRL 574



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 131/453 (28%), Positives = 243/453 (53%), Gaps = 3/453 (0%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   + T LI  Y   G I+ A  +FD +P ++ V+WT +I GY+       A  +F +M
Sbjct: 147 GNVYVGTALINLYAKVGCIDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKM 206

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
             + V P+ F L+S + AC  +  L      HG A +  +E    V N+L+D+Y  C   
Sbjct: 207 GLDGVRPDRFVLASAVSACSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCS-R 265

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +  AR +F+ M+ +N VSWTT+I GY  +      + +F ++  EG + + ++ +  + +
Sbjct: 266 LSLARKLFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNS 325

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C S   +  G+ +HA  IK    S+  V NS++DMY + + L++A   F+ + E D I++
Sbjct: 326 CGSLAAIWQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISY 385

Query: 284 NTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N +I GY + G  +  +++FSKM+     P+  TF S++   ++ +A+   +Q+H  IV+
Sbjct: 386 NAMIEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQIHGLIVK 445

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            G   +L   ++LID+Y+K   + D++ +F+ M +RD+V W +M+ G   +  G+EA++L
Sbjct: 446 SGTSLDLYAGSSLIDVYSKFSLVEDAKAVFNLMHNRDMVIWNAMIFGLAQNEQGEEAVKL 505

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           F+++  SG+ P+   F+A++T  S    +  G ++   +     + +  +   ++D+  +
Sbjct: 506 FNQLQVSGLAPNEFTFVALVTVASTLVSMFHGQQFHAQIIKAGADSDHHVSNALIDMYAK 565

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            G +KE   L +S   K D   W  ++    +H
Sbjct: 566 CGFIKEGRLLFESTLGK-DVICWNSMISTYAQH 597



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/438 (25%), Positives = 219/438 (50%), Gaps = 14/438 (3%)

Query: 133 LVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHS 192
           L H  A+  G    +++ N L+  Y+     + +AR +F+ M  KN VSW + I+ +A  
Sbjct: 32  LAHARAVVTGALPDLFLANLLLRAYSKLG-RVRDARRLFDRMPHKNLVSWGSAISMHAQH 90

Query: 193 GNGYGGLGVFK--EMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLP 250
           G     + +F   +    G   N +  + A+RACA +  VSFG+ +H   ++ G   N+ 
Sbjct: 91  GCEEDAVALFAAFQRASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIGLDGNVY 150

Query: 251 VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSER 309
           V  +++++Y +  C+  A   FD +  K+ +TW  +I GY + G     L +F KM  + 
Sbjct: 151 VGTALINLYAKVGCIDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDG 210

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
             P+ F   S ++AC+ L  L  G+Q H    R  ++ + ++ NALID+Y KC  +S ++
Sbjct: 211 VRPDRFVLASAVSACSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSLAR 270

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
           K+F  M +R+LV+WT+M+ GY  +    EA+ +F ++ + G +PD     ++L +C    
Sbjct: 271 KLFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGSLA 330

Query: 430 LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
            + +G +        N+  ++ +   ++D+  +   + EA  + +++  + D   +  ++
Sbjct: 331 AIWQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALA-EDDAISYNAMI 389

Query: 490 GACKEHRLPNLGK----LAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545
                 RL +L       + +R   LKP+ + T++ L  + +++   E   +   ++   
Sbjct: 390 EGYS--RLGDLAGAIDVFSKMRYCSLKPSPL-TFVSLLGVSSSQSAIELSKQIHGLIVKS 446

Query: 546 GSKKEV--GMSWIEVRDK 561
           G+  ++  G S I+V  K
Sbjct: 447 GTSLDLYAGSSLIDVYSK 464


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 194/484 (40%), Positives = 286/484 (59%), Gaps = 4/484 (0%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM 174
           + S+L+AC     +S    VHG  +K  +       N+L+D+YA C + +D A LVF+ M
Sbjct: 1   MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGV-LDGAILVFDLM 59

Query: 175 KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGK 234
             +  V+WT+LI  YA  G     + +F EM  EGV  + ++ +  + ACA  G +  GK
Sbjct: 60  SVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGK 119

Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEK-S 293
            +H  + ++   SN+ V N+++DMY +   + DAN  F EM  KD+I+WNT+I GY K S
Sbjct: 120 DVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNS 179

Query: 294 GSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353
             +E L++F  M  E   P+  T   I+ ACA+LA+L  G++VH  I+R G   +  +AN
Sbjct: 180 LPNEALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVAN 238

Query: 354 ALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP 413
           AL+DMY KCG    ++ +F  +  +DL+TWT M+ GYG HG G  AI  F+EM ++G+ P
Sbjct: 239 ALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEP 298

Query: 414 DRIVFMAVLTACSHAGLVDEGLKYFKSMNDY-NVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
           D + F+++L ACSH+GL+DEG ++F  M D  NV P  E Y C+VDLL R+G++  AY+ 
Sbjct: 299 DEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKF 358

Query: 473 IKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKW 532
           IKSMP +PD ++WG LL  C+ H    L +  A  V +L+P   G Y++L+N YA   KW
Sbjct: 359 IKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEKW 418

Query: 533 EEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNET 592
           EE  K R+ +   G KK  G SWIEV+ KV  F+A +      + +  +L+ L   M E 
Sbjct: 419 EEVKKLRQKIGRRGLKKNPGCSWIEVKSKVHIFLAGNSSHPQAKKIEVLLKRLRSKMKEE 478

Query: 593 AYEP 596
            Y P
Sbjct: 479 GYFP 482



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 112/353 (31%), Positives = 185/353 (52%), Gaps = 9/353 (2%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           +     L+  Y   G+++ A  +FD M  R VV+WT +IA Y      ++A  +F EM R
Sbjct: 33  TTFCNTLLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDR 92

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             V+P+ FT+++VL AC    SL N   VH    +  ++ +I+V N+LMD+YA C  SM+
Sbjct: 93  EGVSPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCG-SME 151

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA--VRA 223
           +A  VF +M  K+ +SW T+I GY+ +      L +F +M+L   EM P   ++A  + A
Sbjct: 152 DANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVL---EMKPDGTTLACILPA 208

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           CAS   +  GK +H  ++++GF S+  V N+++DMY +      A   FD +  KDLITW
Sbjct: 209 CASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITW 268

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
             +IAGY   G  +  +  F++M+     P+  +F SI+ AC+    L  G +    +  
Sbjct: 269 TVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQD 328

Query: 343 R-GLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAH 393
              +   L     ++D+ A+ G ++ + K    M  + D   W +++ G   H
Sbjct: 329 ECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIH 381


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 183/497 (36%), Positives = 293/497 (58%), Gaps = 7/497 (1%)

Query: 117 SVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNARLVFNDMK 175
           ++L AC   ++L     VH   IK     + Y+   L+  Y  C C  +++AR V ++M 
Sbjct: 56  ALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDC--LEDARKVLDEMP 113

Query: 176 WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKL 235
            KN VSWT +I+ Y+ +G+    L VF EM+    + N ++F+  + +C     ++ GK 
Sbjct: 114 EKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQ 173

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG- 294
           IH  ++K  + S++ V +S+LDMY +   + +A + F+ + E+D+++   IIAGY + G 
Sbjct: 174 IHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGL 233

Query: 295 SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
             E L MF +++SE   PN  T+ S++ A + LA L  G+Q H  ++RR L     L N+
Sbjct: 234 DEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNS 293

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV-KSGVRP 413
           LIDMY+KCGN+S +Q++F  M +R  ++W +M++GY  HG G+E +ELF  M  +  V+P
Sbjct: 294 LIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKP 353

Query: 414 DRIVFMAVLTACSHAGLVDEGLKYFKSM--NDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471
           D +  +AVL+ CSH  + D GL  +  M   +Y + P+ E YGC+VD+LGRAGR+ EA+E
Sbjct: 354 DAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFE 413

Query: 472 LIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK 531
            IK MP KP   V G LLGAC+ H   ++G+    R+++++P   G Y+ILSN+YA+ G+
Sbjct: 414 FIKRMPSKPTAGVLGSLLGACRVHLSVDIGEYVGHRLIEIEPENAGNYVILSNLYASAGR 473

Query: 532 WEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNE 591
           WE+    R +M      KE G SWI+    +  F AND+     + V   ++ +   M +
Sbjct: 474 WEDVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQ 533

Query: 592 TAYEPDIDCLIHDLEGE 608
             Y PDI C+++D++ E
Sbjct: 534 AGYVPDISCVLYDVDEE 550



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 177/337 (52%), Gaps = 5/337 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + L T L+  Y     +E+AR + DEMPE++VVSWT MI+ Y+     ++A +VF EM+R
Sbjct: 86  TYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMR 145

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           ++  PN FT ++VL +C     L+    +HG+ +K   +  I+V +SL+D+YA     ++
Sbjct: 146 SDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAG-QIE 204

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            AR +F  +  ++ VS T +I GYA  G     L +F+ +  EG+  N  +++  + A +
Sbjct: 205 EAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALS 264

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               +  GK  H  V++        + NS++DMY +   LS A + FD M E+  I+WN 
Sbjct: 265 GLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPERTAISWNA 324

Query: 286 IIAGYEKSG-SSECLNMFSKMKSE-RFSPNCFTFTSIIAACATLAALSCGQQVHAGIV-- 341
           ++ GY K G   E L +F  M+ E R  P+  T  ++++ C+       G  ++ G+V  
Sbjct: 325 MLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAG 384

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR 378
             G+  +      ++DM  + G I ++ +    M  +
Sbjct: 385 EYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSK 421



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 186/346 (53%), Gaps = 17/346 (4%)

Query: 200 GVFKEMLLEGVEMNP----YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSI 255
           G  +E LLE V + P    + +   + AC     +  G+ +HA +IK  +     +   +
Sbjct: 33  GRLQEALLEMVMLGPEIGFHCYDALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRL 92

Query: 256 LDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNC 314
           L  Y + DCL DA +  DEM EK++++W  +I+ Y ++G SSE L++F++M      PN 
Sbjct: 93  LIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNE 152

Query: 315 FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSE 374
           FTF +++ +C   + L+ G+Q+H  IV+   D ++ + ++L+DMYAK G I ++++IF  
Sbjct: 153 FTFATVLTSCIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFEC 212

Query: 375 MSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434
           + +RD+V+ T+++ GY   G  +EA+E+F  +   G+RP+ + + ++LTA S   L+D G
Sbjct: 213 LPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHG 272

Query: 435 LKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKE 494
            +    +    +     +   ++D+  + G +  A  L  +MP +   S W  +L    +
Sbjct: 273 KQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPERTAIS-WNAMLVGYSK 331

Query: 495 HRLPNLGK--LAALRVL----DLKPNMMGTYIILSNIYAAEGKWEE 534
           H    LG+  L   R++     +KP+ +    +LS    + GK E+
Sbjct: 332 H---GLGREVLELFRLMRDEKRVKPDAVTLLAVLSG--CSHGKMED 372


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 210/619 (33%), Positives = 352/619 (56%), Gaps = 20/619 (3%)

Query: 5   RLLSYAATFHCHKIPPIIKQSLQSVKKSS----IQSDPPLIPKGPSI-LATNLIKSYFDE 59
           ++L Y  T +    P ++K +  ++K++S    I  D   +    ++ ++T L+  Y   
Sbjct: 109 KMLGYGITPNRFTFPFVLK-ACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKC 167

Query: 60  GLIEEARTLFDEMPERDVVSWTVMIAGYTSFN-CHNQAWTVFVEMVRNEVNPNAFTLSSV 118
           G +++A+ +FD+M +RDVV+W  MI+G++     +++   + V+M +N+V+PN+ T+  V
Sbjct: 168 GCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQM-QNDVSPNSSTIVGV 226

Query: 119 LKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNARLVFNDMKW- 176
           L A   + SL +   +HG  ++ G  G + V   ++DVY  C CI  D AR +F+ M   
Sbjct: 227 LPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCI--DYARRIFDMMGIV 284

Query: 177 KNDVSWTTLITGYAHSGNGYGGLGVFKEMLL---EGVEMNPYSFSIAVRACASTGWVSFG 233
           KN+V+W+ ++  Y         L +F ++L+   + + ++  + +  +R CA+   +S G
Sbjct: 285 KNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTG 344

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
             +H   IK GF  +L V N++L MY +   ++ A ++F+EM  +D +++  II+GY ++
Sbjct: 345 TCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQN 404

Query: 294 GSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
           G+SE  L MF +M+    +P   T  S++ ACA LA L  G   H   +  G   +  + 
Sbjct: 405 GNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMIC 464

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
           NALIDMYAKCG I  ++K+F  M  R +V+W +M+I YG HG G EA+ LFD M   G++
Sbjct: 465 NALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLK 524

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471
           PD + F+ +++ACSH+GLV EG  +F +M  D+ + P  E Y C+VDLL RAG  KE + 
Sbjct: 525 PDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHS 584

Query: 472 LIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK 531
            I+ MP +PD  VWG LL AC+ ++   LG+  + ++  L P   G +++LSN+Y+A G+
Sbjct: 585 FIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAVGR 644

Query: 532 WEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQY--VYGVLEMLIRHM 589
           W++ A+ R   +  G +K  G SWIE+   V  F+      SH Q   +   L+ L+  M
Sbjct: 645 WDDAAQVRFTQKEQGFEKSPGCSWIEISGVVHTFLGGG-YRSHPQLTQISNKLDELLVEM 703

Query: 590 NETAYEPDIDCLIHDLEGE 608
               Y+ +   +  D+E E
Sbjct: 704 KRLGYQAESSYVFQDVEEE 722



 Score =  204 bits (520), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 144/504 (28%), Positives = 249/504 (49%), Gaps = 33/504 (6%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPER--DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108
            L+  Y     ++ AR +FD+MP R  +VV W ++I  Y     + +A  ++ +M+   +
Sbjct: 56  KLVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGI 115

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
            PN FT   VLKAC  +K  S    +H    +  LE ++YV  +L+D YA C   +D+A+
Sbjct: 116 TPNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCG-CLDDAK 174

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            VF+ M  ++ V+W ++I+G++     Y  +      +   V  N  +    + A A   
Sbjct: 175 EVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVN 234

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLITWNTII 287
            +  GK IH   ++ GF  ++ V   ILD+Y +  C+  A + FD M   K+ +TW+ ++
Sbjct: 235 SLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMV 294

Query: 288 AGYEKSG-SSECLNMFSK---MKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
             Y       E L +F +   +K +    +  T  ++I  CA L  LS G  +H   ++ 
Sbjct: 295 GAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKS 354

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G   +L + N L+ MYAKCG I+ + + F+EM  RD V++T+++ GY  +G+ +E + +F
Sbjct: 355 GFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMF 414

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV----NPNKEIYGCVVDL 459
            EM  SG+ P++    +VL AC+H      GL Y    + Y +      +  I   ++D+
Sbjct: 415 LEMQLSGINPEKATLASVLPACAHLA----GLHYGSCSHCYAIICGFTADTMICNALIDM 470

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD------LKP 513
             + G++  A ++   M  +   S W  ++ A   H +     L AL + D      LKP
Sbjct: 471 YAKCGKIDTARKVFDRMHKRGIVS-WNTMIIAYGIHGI----GLEALLLFDNMQSEGLKP 525

Query: 514 NMMGTYIILSNI-----YAAEGKW 532
           + + T+I L +        AEGK+
Sbjct: 526 DDV-TFICLISACSHSGLVAEGKY 548



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 169/319 (52%), Gaps = 16/319 (5%)

Query: 118 VLKACKGMKSLSNAALVHGMAIK-------EGLEGSIYVENSLMDVYATCCISMDNARLV 170
           +L++C   KSL    L+H   +K         L         L+D+Y  C   +  AR V
Sbjct: 15  LLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACS-ELKIARHV 73

Query: 171 FNDM--KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
           F+ M  + KN V W  LI  YA +G     + ++ +ML  G+  N ++F   ++AC++  
Sbjct: 74  FDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALK 133

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
             S G+ IH  + +    SN+ V  +++D Y +  CL DA + FD+M ++D++ WN++I+
Sbjct: 134 EASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMIS 193

Query: 289 GY--EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           G+   +    E   +  +M+++  SPN  T   ++ A A + +L  G+++H   VRRG  
Sbjct: 194 GFSLHEGSYDEVARLLVQMQND-VSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFV 252

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSD-RDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           G++ +   ++D+Y KC  I  +++IF  M   ++ VTW++M+  Y      +EA+ELF +
Sbjct: 253 GDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQ 312

Query: 406 MVKSGVRPDRIVFMAVLTA 424
           ++   ++ D IV  AV  A
Sbjct: 313 LLM--LKDDVIVLSAVTLA 329



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 145/289 (50%), Gaps = 20/289 (6%)

Query: 218 SIAVRACASTGWVSFGKLIHAAVIK---HGFGSNLPVMN----SILDMYCRFDCLSDANQ 270
           ++ + +C  +  +  GKLIH  ++K       +NL   +     ++D+Y     L  A  
Sbjct: 13  TVLLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELKIARH 72

Query: 271 YFDEMTE--KDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATL 327
            FD+M    K+++ WN +I  Y  +G   E ++++ KM     +PN FTF  ++ AC+ L
Sbjct: 73  VFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSAL 132

Query: 328 AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMM 387
              S G+++H  I R  L+ N+ ++ AL+D YAKCG + D++++F +M  RD+V W SM+
Sbjct: 133 KEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMI 192

Query: 388 IGYGAH-GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV 446
            G+  H G   E   L  +M ++ V P+    + VL A +        L++ K ++ + V
Sbjct: 193 SGFSLHEGSYDEVARLLVQM-QNDVSPNSSTIVGVLPAVAQV----NSLRHGKEIHGFCV 247

Query: 447 NP----NKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
                 +  +   ++D+ G+   +  A  +   M    +E  W  ++GA
Sbjct: 248 RRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGA 296


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 208/564 (36%), Positives = 323/564 (57%), Gaps = 38/564 (6%)

Query: 48   LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
            L   L+++Y   G     R +FDE+P+++VV + VMI  Y + + ++ A  VF  M  + 
Sbjct: 1062 LGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHG 1121

Query: 108  VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
            ++P+ +T   VLKA  G + L     +H   ++ GL+ +++V N L+ +Y  C   ++  
Sbjct: 1122 IDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEAC 1181

Query: 168  RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
            R V ++M  ++ VSW +L+ G A +G     L V KEM L G  + P + ++A       
Sbjct: 1182 R-VLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLG--LKPDAGTMA------- 1231

Query: 228  GWVSFGKLIHAAVIKHGFGSNLP-VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
                               S LP V N+ LD       +S   + F ++  K L++WN +
Sbjct: 1232 -------------------SLLPAVTNTCLDN------VSFVKEMFMKLANKSLVSWNVM 1266

Query: 287  IAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
            IA Y   S  +E +++F +M+     P+  +  S++ AC  L+AL  G+++H  +VR+ L
Sbjct: 1267 IAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRL 1326

Query: 346  DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
              NL L NALIDMYAKCG +  ++++F +M  RD+V+WTSM+  YG +G G++A+ LF  
Sbjct: 1327 QPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSR 1386

Query: 406  MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDY-NVNPNKEIYGCVVDLLGRAG 464
            M   G+ PD I F++VL+ACSHAGL+DEG  YFK M +   + P  E + C+VDLLGRAG
Sbjct: 1387 MQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAG 1446

Query: 465  RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
            +V EAY  IK MP +P+E VWG LL AC+ +    +G LAA ++  L P   G Y++LSN
Sbjct: 1447 QVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSN 1506

Query: 525  IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
            IYA  G+WE+    R IM+  G KK  G+S  E+ ++V  F+A D+    ++ +Y  L++
Sbjct: 1507 IYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDV 1566

Query: 585  LIRHMNETAYEPDIDCLIHDLEGE 608
            L+  M E  Y P+ D  +HD+E E
Sbjct: 1567 LVGKMKEAGYVPETDSALHDVEEE 1590



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 164/356 (46%), Gaps = 17/356 (4%)

Query: 230  VSFGKLIHAAV-IKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            + + K +H+ + I H   SN  +   ++  Y            FDE+ +K+++ +N +I 
Sbjct: 1040 IKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIR 1099

Query: 289  GYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
             Y  +   S+ L +F  M      P+ +T+  ++ A +    L  G Q+HA +VR GLD 
Sbjct: 1100 SYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDL 1159

Query: 348  NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
            N+ + N LI MY KCG + ++ ++  ZM  RD+V+W S++ G   +G   +A+E+  EM 
Sbjct: 1160 NVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEME 1219

Query: 408  KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
              G++PD     ++L A ++  L  + + + K M     N +   +  ++ +        
Sbjct: 1220 LLGLKPDAGTMASLLPAVTNTCL--DNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPA 1277

Query: 468  EAYELIKSM---PFKPDESVWGPLLGACKEHRLPNLGKLAALRVL--DLKPNMMGTYIIL 522
            EA ++   M      PD      +L AC +     LG+     V+   L+PN++    ++
Sbjct: 1278 EAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALI 1337

Query: 523  SNIYAAEGKWE------EFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMG 572
             ++YA  G  E      +  KFR ++         GM+  + RD V  F     +G
Sbjct: 1338 -DMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNG-KGRDAVSLFSRMQDLG 1391



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 45   PSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
            P++L  N LI  Y   G +E AR +FD+M  RDVVSWT MI+ Y        A ++F  M
Sbjct: 1328 PNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRM 1387

Query: 104  VRNEVNPNAFTLSSVLKAC 122
                +NP++    SVL AC
Sbjct: 1388 QDLGLNPDSIAFVSVLSAC 1406


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 201/589 (34%), Positives = 327/589 (55%), Gaps = 12/589 (2%)

Query: 27  QSVKKSSIQSDPPLIPKG---PSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVM 83
           +S+ +  +Q    ++  G    + +   LI  Y    ++ +A  +FD M  RD V+W +M
Sbjct: 218 ESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIM 277

Query: 84  IAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGL 143
           I GY +   + + + +F  M    V  +     + LK C   + L+    +H   +K G 
Sbjct: 278 IGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGY 337

Query: 144 EGSIYVENSLMDVYATCCISMDNARLVFNDMKW-KNDVSWTTLITGYAHSGNGYGGLGVF 202
           E +  +  +LM  Y+ C  S+D A  +F+      N V+WT +I G+  + N    + +F
Sbjct: 338 EFAQDIRTALMVTYSKCS-SVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLF 396

Query: 203 KEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRF 262
            +M  EGV  N +++S  +    S    S    +HA +IK  +     V  ++LD Y + 
Sbjct: 397 CQMSREGVRPNHFTYSTVLAGKPS----SLLSQLHAQIIKAYYEKVPSVATALLDAYVKT 452

Query: 263 DCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSII 321
             + ++ + F  +  KD++ W+ ++ G  ++  SE  + +F ++  E   PN +TF+S+I
Sbjct: 453 GNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVI 512

Query: 322 AACATLAA-LSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDL 380
            AC++ AA +  G+Q+HA  V+ G    L +++AL+ MY+K GNI  ++K+F+   +RD+
Sbjct: 513 NACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDI 572

Query: 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS 440
           V+W SM+ GYG HG  K+A+E+F  M   G+  D + F+ VLTAC+HAGLV+EG KYF  
Sbjct: 573 VSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNI 632

Query: 441 M-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN 499
           M  DY+++   E Y C+VDL  RAG   +A ++I  MPF    ++W  LL AC+ HR   
Sbjct: 633 MIKDYHIDKKXEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLE 692

Query: 500 LGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVR 559
           LGKLAA +++ L+PN    Y++LSNI+A  G WEE A  RK+M     KKE G SWIE++
Sbjct: 693 LGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIK 752

Query: 560 DKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           +++  F+A D     +  VY  LE L   + +  Y+PD + + HD+E E
Sbjct: 753 NRIFSFLAGDVSHPFSDLVYAKLEELSIKLKDMGYQPDTNYVFHDVEEE 801



 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 125/455 (27%), Positives = 236/455 (51%), Gaps = 17/455 (3%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + T+L+  Y      E+ R +FDEM  ++VVSWT +++GY     +++   +  +M    
Sbjct: 141 VGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEG 200

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           VNPN FT ++VL A      +     VH M +K G E + +V N+L+ +Y    +  D A
Sbjct: 201 VNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGD-A 259

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             VF+ M  ++ V+W  +I GYA  G    G  +F  M L GV+++   F  A++ C+  
Sbjct: 260 EAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQ 319

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLITWNTI 286
             ++F K +H  V+K+G+     +  +++  Y +   + +A + F       +++TW  +
Sbjct: 320 RELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAM 379

Query: 287 IAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I G+ + + + + +++F +M  E   PN FT+++++A   +    S   Q+HA I++   
Sbjct: 380 IGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAGKPS----SLLSQLHAQIIKAYY 435

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           +   ++A AL+D Y K GN+ +S ++F  +  +D+V W++M+ G       ++A+E+F +
Sbjct: 436 EKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQ 495

Query: 406 MVKSGVRPDRIVFMAVLTAC-SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCV----VDLL 460
           +VK GV+P+   F +V+ AC S A  V+ G    K ++   V   K    CV    + + 
Sbjct: 496 LVKEGVKPNEYTFSSVINACSSSAATVEHG----KQIHATAVKSGKSNALCVSSALLTMY 551

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            + G ++ A E + +   + D   W  ++    +H
Sbjct: 552 SKKGNIESA-EKVFTRQEERDIVSWNSMITGYGQH 585



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 124/435 (28%), Positives = 223/435 (51%), Gaps = 10/435 (2%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           A  LFDE P +D+  +  ++  ++  N   +A  +F ++  + +  +  TLS  LK C  
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTT 184
           +        VH  ++K G    + V  SL+D+Y       ++ R +F++M  KN VSWT+
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKT-EDFEDGRGIFDEMGIKNVVSWTS 175

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG 244
           L++GYA +G     + +  +M +EGV  N ++F+  + A A    +  G  +HA ++K+G
Sbjct: 176 LLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNG 235

Query: 245 FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFS 303
           F     V N+++ MY + + + DA   FD M  +D +TWN +I GY   G   E   MF 
Sbjct: 236 FEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFH 295

Query: 304 KMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG 363
           +M+      +   F + +  C+    L+  +Q+H G+V+ G +    +  AL+  Y+KC 
Sbjct: 296 RMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCS 355

Query: 364 NISDSQKIFSEMSD--RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAV 421
           ++ ++ K+FS M+D   ++VTWT+M+ G+  + + K+A++LF +M + GVRP+   +  V
Sbjct: 356 SVDEAFKLFS-MADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTV 414

Query: 422 LTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481
           L     + L     +  K+   Y   P+  +   ++D   + G V E+  +  S+P K D
Sbjct: 415 LAGKPSSLLSQLHAQIIKAY--YEKVPS--VATALLDAYVKTGNVVESARVFYSIPAK-D 469

Query: 482 ESVWGPLLGACKEHR 496
              W  +L    + R
Sbjct: 470 IVAWSAMLTGLAQTR 484


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 197/621 (31%), Positives = 324/621 (52%), Gaps = 69/621 (11%)

Query: 56  YFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTL 115
           +   G + +AR +F EMPERD VSWTVM+ G        +A    ++M  +   P  FTL
Sbjct: 2   FAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTL 61

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS------------ 163
           ++VL +C   ++ +    VH   +K GL   + V NS++++Y  C  S            
Sbjct: 62  TNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPV 121

Query: 164 ------------------MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEM 205
                             MD A  +F  M  ++ VSW  +I GY  +G     L +F  M
Sbjct: 122 RSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRM 181

Query: 206 LLEGVEMNPYSFSIA--VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFD 263
           L E   M P  F+I   + ACA+ G V  GK +HA +++     N  V N+++  Y +  
Sbjct: 182 LHES-SMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSG 240

Query: 264 CLSDANQYFDE---------------------------------MTEKDLITWNTIIAGY 290
            + +A +  D+                                 M  +D++ W  +I GY
Sbjct: 241 SVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGY 300

Query: 291 EKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
           E++G + E +++F  M +    PN +T  ++++ CA+LA L  G+Q+H   +R  L+ + 
Sbjct: 301 EQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSS 360

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           +++NA+I MYA+ G+   ++++F ++  R + +TWTSM++    HG G+EA+ LF+EM++
Sbjct: 361 SVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLR 420

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVK 467
           +GV PDRI ++ VL+ACSHAG V+EG +Y+  + N++ + P    Y C+VDLL RAG   
Sbjct: 421 AGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFS 480

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527
           EA E I+ MP +PD   WG LL AC+ H+   L +LAA ++L + PN  G Y  ++N+Y+
Sbjct: 481 EAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYS 540

Query: 528 AEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIR 587
           A G+W + A+  K  +    +KE G SW  +R K+  F A+D +      VY +   +  
Sbjct: 541 ACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWE 600

Query: 588 HMNETAYEPDIDCLIHDLEGE 608
            +    + PD+  ++HD++ E
Sbjct: 601 EIKGAGFVPDLQSVLHDVDDE 621



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 109/467 (23%), Positives = 198/467 (42%), Gaps = 69/467 (14%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDV------------------------------ 77
           +A +++  Y   G  E A T+F+ MP R V                              
Sbjct: 95  VANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRS 154

Query: 78  -VSWTVMIAGYTSFNCHNQAWTVFVEMV-RNEVNPNAFTLSSVLKACKGMKSLSNAALVH 135
            VSW  MIAGY       +A  +F  M+  + + P+ FT++SVL AC  + ++     VH
Sbjct: 155 IVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVH 214

Query: 136 GMAIKEGLEGSIYVENSLMDVYATC-------------------CIS------------- 163
              ++  +  +  V N+L+  YA                      IS             
Sbjct: 215 AYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGD 274

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           M++AR +F  M  ++ V+WT +I GY  +G     + +F+ M+  G E N Y+ +  +  
Sbjct: 275 MESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSV 334

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLIT 282
           CAS   + +GK IH   I+     +  V N+I+ MY R      A + FD++   K+ IT
Sbjct: 335 CASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETIT 394

Query: 283 WNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           W ++I    + G   E + +F +M      P+  T+  +++AC+    ++ G++ +  I 
Sbjct: 395 WTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIK 454

Query: 342 -RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEA 399
               +   ++    ++D+ A+ G  S++Q+    M  + D + W S++     H +  E 
Sbjct: 455 NEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNA-EL 513

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV 446
            EL  E + S    +   + A+    S  G   +  + +K+  +  V
Sbjct: 514 AELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAV 560



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 126/249 (50%), Gaps = 33/249 (13%)

Query: 258 MYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFT 316
           M+ +   L+DA   F EM E+D ++W  ++ G  ++G   E +     M ++ F+P  FT
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGN------------ 364
            T+++++CA   A + G++VH+ +V+ GL   + +AN++++MY KCG+            
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMP 120

Query: 365 -------------------ISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
                              +  ++ +F  M DR +V+W +M+ GY  +G   +A++LF  
Sbjct: 121 VRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSR 180

Query: 406 MV-KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
           M+ +S + PD     +VL+AC++ G V  G +    +    +  N ++   ++    ++G
Sbjct: 181 MLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSG 240

Query: 465 RVKEAYELI 473
            V+ A  ++
Sbjct: 241 SVENARRIM 249



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 5/134 (3%)

Query: 358 MYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIV 417
           M+AK G ++D++ +F+EM +RD V+WT M++G    G   EAI+   +M   G  P +  
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 418 FMAVLTAC--SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKS 475
              VL++C  + AG V  G K    +    +     +   V+++ G+ G  + A  + + 
Sbjct: 61  LTNVLSSCAVTQAGAV--GRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFER 118

Query: 476 MPFKPDESVWGPLL 489
           MP +   S W  ++
Sbjct: 119 MPVRSVSS-WNAMV 131


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 189/564 (33%), Positives = 323/564 (57%), Gaps = 4/564 (0%)

Query: 48   LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
            +A +L+  Y   G    AR +F++M   D++SW  MI+     +   ++  +F++++   
Sbjct: 941  VANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEG 1000

Query: 108  VNPNAFTLSSVLKACKGM-KSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + P+ FTL+SVL+AC  +   L+ +  +H  A+K G     +V  +L+DVY+     M+ 
Sbjct: 1001 LKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSG-KMEE 1059

Query: 167  ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
            A  +F +    +   W  ++ GY    +G   L +F  +   G + +  + + A +AC  
Sbjct: 1060 AEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGC 1119

Query: 227  TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
               +  GK IHA  IK GF S+L V + ILDMY +   + +A   F+ ++  D + W ++
Sbjct: 1120 LVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSM 1179

Query: 287  IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
            I+G   +G+  + L ++ +M+  R  P+ +TF ++I A + + AL  G+Q+HA +++   
Sbjct: 1180 ISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDC 1239

Query: 346  DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
              +  +  +L+DMYAKCGNI D+ ++F +M+ R++  W +M++G   HG+ +EA+ LF  
Sbjct: 1240 VSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKS 1299

Query: 406  MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAG 464
            M   G+ PDR+ F+ +L+ACSHAGL  E  +Y  SM NDY + P  E Y C+VD LGRAG
Sbjct: 1300 MKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAG 1359

Query: 465  RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
             V+EA ++I++MPFK   S+   LLGAC+       GK  A R+  L+P     Y++LSN
Sbjct: 1360 LVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSN 1419

Query: 525  IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
            IYAA  +W++    RK+M+    KK+ G SWI+V++ +  F+ +D+       +Y  +E 
Sbjct: 1420 IYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEE 1479

Query: 585  LIRHMNETAYEPDIDCLIHDLEGE 608
            +++ + E  Y PD + ++ D+E E
Sbjct: 1480 MMKTIREDGYVPDTEFVLLDVEDE 1503



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 119/441 (26%), Positives = 215/441 (48%), Gaps = 37/441 (8%)

Query: 44   GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYT----SFNCHNQAWTV 99
            G   L+ NL+  Y   G +  AR +FD  PERD+V+W  ++  Y     S + + Q    
Sbjct: 654  GDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLH 713

Query: 100  FVEMVRNEVNPNA-FTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA 158
               ++R  +      TL+ VLK C     L  A  VHG AIK GLE  ++V  +L+++Y+
Sbjct: 714  LFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYS 773

Query: 159  TCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFS 218
             C   M +ARL+F+ M+ ++ V W  ++ GY   G       +F E    G+  + +S  
Sbjct: 774  KCG-RMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQ 832

Query: 219  IAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK 278
            + +   +   W   GK +   V    + + L + +   D++C    LS+           
Sbjct: 833  LILNGVSEVNWDE-GKWLADQV--QAYAAKLSLSDDNPDVFCWNKKLSEC---------- 879

Query: 279  DLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
                   + AG +  G+ EC   F  M       +  T   ++AA A    L  G+QVH 
Sbjct: 880  -------LWAG-DNWGAIEC---FVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHG 928

Query: 339  GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
              V+ GLD ++++AN+L++MY+K G    ++++F++M   DL++W SM+         +E
Sbjct: 929  IAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEE 988

Query: 399  AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN----PNKEIYG 454
            ++ LF +++  G++PD     +VL ACS   L+D GL   + ++ + +      +  +  
Sbjct: 989  SVNLFIDLLHEGLKPDHFTLASVLRACS--SLID-GLNISRQIHVHALKTGNIADSFVAT 1045

Query: 455  CVVDLLGRAGRVKEAYELIKS 475
             ++D+  ++G+++EA  L ++
Sbjct: 1046 TLIDVYSKSGKMEEAEFLFQN 1066



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 170/332 (51%), Gaps = 3/332 (0%)

Query: 46   SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
            S +AT LI  Y   G +EEA  LF    + D+  W  M+ GY   N   +A  +F  + +
Sbjct: 1041 SFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHK 1100

Query: 106  NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
            +    +  TL++  KAC  +  L     +H  AIK G +  ++V + ++D+Y  C   M 
Sbjct: 1101 SGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCG-DMV 1159

Query: 166  NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            NA +VFN +   +DV+WT++I+G   +GN    L ++  M    V  + Y+F+  ++A +
Sbjct: 1160 NAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASS 1219

Query: 226  STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
                +  G+ +HA VIK    S+  V  S++DMY +   + DA + F +M  +++  WN 
Sbjct: 1220 CVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNA 1279

Query: 286  IIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG-QQVHAGIVRR 343
            ++ G  + G++ E +N+F  MKS    P+  +F  I++AC+     S   + +H+     
Sbjct: 1280 MLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDY 1339

Query: 344  GLDGNLALANALIDMYAKCGNISDSQKIFSEM 375
            G++  +   + L+D   + G + ++ K+   M
Sbjct: 1340 GIEPEIEHYSCLVDALGRAGLVQEADKVIETM 1371



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 126/253 (49%), Gaps = 17/253 (6%)

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           +R   ST  +  GK  HA ++  G   +  + N++L MY +   LS A Q FD   E+DL
Sbjct: 628 LRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDL 687

Query: 281 ITWNTIIAGYEKS------GSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334
           +TWN I+  Y  S       + E L++F  +++   S    T   ++  C     L   +
Sbjct: 688 VTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAE 747

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
            VH   ++ GL+ ++ ++ AL+++Y+KCG + D++ +F  M +RD+V W  M+ GY   G
Sbjct: 748 GVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLG 807

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG------LVDEGLKYFKSMNDYNVNP 448
             KEA +LF E  +SG+RPD      +L   S         L D+   Y   ++  + NP
Sbjct: 808 LEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEVNWDEGKWLADQVQAYAAKLSLSDDNP 867

Query: 449 -----NKEIYGCV 456
                NK++  C+
Sbjct: 868 DVFCWNKKLSECL 880



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 102/217 (47%), Gaps = 19/217 (8%)

Query: 330 LSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIG 389
           L  G+  HA IV  G  G+  L+N L+ MY+KCG++S ++++F    +RDLVTW +++  
Sbjct: 637 LLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGA 696

Query: 390 YGA-----HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDY 444
           Y A      G+ +E + LF  +  S     R+    VL  C ++G     L   + ++ Y
Sbjct: 697 YAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGC----LWAAEGVHGY 752

Query: 445 NVNPNKE----IYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN- 499
            +    E    + G +V++  + GR+++A  L   M  + D  +W  +L    +  L   
Sbjct: 753 AIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRER-DVVLWNMMLKGYVQLGLEKE 811

Query: 500 -LGKLAALRVLDLKPNMMGTYIILSNIYAA---EGKW 532
                +      L+P+     +IL+ +      EGKW
Sbjct: 812 AFQLFSEFHRSGLRPDEFSVQLILNGVSEVNWDEGKW 848


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 192/546 (35%), Positives = 310/546 (56%), Gaps = 5/546 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y   G +  AR +FD+MP RD +SW  MI+GY       +   +F  M++  V+P+
Sbjct: 248 LITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPD 307

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
             T++SV+ AC+ +        +HG  ++        + NSL+ +Y++  + ++ A  VF
Sbjct: 308 LMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGL-IEEAETVF 366

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           +  + ++ VSWT +I+GY +       L  +K M  EG+  +  + +I + AC+    + 
Sbjct: 367 SRTECRDLVSWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLD 426

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            G  +H    + G  S   V NS++DMY +  C+  A + F    EK++++W +II G  
Sbjct: 427 MGMNLHEVAKQKGLVSYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLR 486

Query: 292 KSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
            +    E L  F +M   R  PN  T   +++ACA + AL+CG+++HA  +R G+  +  
Sbjct: 487 INNRCFEALFFFREM-IRRLKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGF 545

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           + NA++DMY +CG +  + K F  + D ++ +W  ++ GY   G G  A ELF  MV+S 
Sbjct: 546 MPNAILDMYVRCGRMEYAWKQFFSV-DHEVTSWNILLTGYAERGKGAHATELFQRMVESN 604

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEA 469
           V P+ + F+++L ACS +G+V EGL+YF SM   Y++ PN + Y CVVDLLGR+G+++EA
Sbjct: 605 VSPNEVTFISILCACSRSGMVAEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSGKLEEA 664

Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529
           YE I+ MP KPD +VWG LL +C+ H    LG+LAA  +       +G YI+LSN+YA  
Sbjct: 665 YEFIQKMPMKPDPAVWGALLNSCRIHHHVELGELAAENIFQDDTTSVGYYILLSNLYADN 724

Query: 530 GKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHM 589
           GKW++ A+ RK+MR  G   + G SW+EV+  V  F+++D      + +  +LE   + M
Sbjct: 725 GKWDKVAEVRKMMRQNGLIVDPGCSWVEVKGTVHAFLSSDNFHPQIKEINALLERFYKKM 784

Query: 590 NETAYE 595
            E   E
Sbjct: 785 KEAGVE 790



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 127/450 (28%), Positives = 229/450 (50%), Gaps = 9/450 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L   L+  +   G + +A  +F  M +R++ SW V++ GY      ++A  ++  M+   
Sbjct: 143 LGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVG 202

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V P+ +T   VL+ C GM +L     +H   I+ G E  + V N+L+ +Y  C   ++ A
Sbjct: 203 VKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCG-DVNTA 261

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           RLVF+ M  ++ +SW  +I+GY  +G    GL +F  M+   V+ +  + +  + AC   
Sbjct: 262 RLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELL 321

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
           G    G+ IH  V++  FG +  + NS++ MY     + +A   F     +DL++W  +I
Sbjct: 322 GDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMI 381

Query: 288 AGYEKS-GSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           +GYE      + L  +  M++E   P+  T   +++AC+ L  L  G  +H    ++GL 
Sbjct: 382 SGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLV 441

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
               +AN+LIDMYAKC  I  + +IF    ++++V+WTS+++G   +    EA+  F EM
Sbjct: 442 SYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREM 501

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
           ++  ++P+ +  + VL+AC+  G +  G +         V+ +  +   ++D+  R GR+
Sbjct: 502 IRR-LKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRM 560

Query: 467 KEAYELIKSMPFKPDESV--WGPLLGACKE 494
           + A++      F  D  V  W  LL    E
Sbjct: 561 EYAWKQF----FSVDHEVTSWNILLTGYAE 586



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 117/421 (27%), Positives = 208/421 (49%), Gaps = 4/421 (0%)

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           +R  V  +A+   ++++ C+  ++    + V+          S+ + N+L+ ++      
Sbjct: 100 LRIPVEDDAYV--ALIRLCEWKRARKEGSRVYSYVSISMSHLSLQLGNALLSMFVRFGNL 157

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +D A  VF  M+ +N  SW  L+ GYA +G     L ++  ML  GV+ + Y+F   +R 
Sbjct: 158 VD-AWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRT 216

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C     +  G+ IH  VI++GF S++ V+N+++ MY +   ++ A   FD+M  +D I+W
Sbjct: 217 CGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRISW 276

Query: 284 NTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N +I+GY ++G   E L +F  M      P+  T TS+I AC  L     G+Q+H  ++R
Sbjct: 277 NAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLR 336

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
                + ++ N+LI MY+  G I +++ +FS    RDLV+WT+M+ GY      ++A+E 
Sbjct: 337 TEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQKALET 396

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           +  M   G+ PD I    VL+ACS    +D G+   +      +     +   ++D+  +
Sbjct: 397 YKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLIDMYAK 456

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
              + +A E+  S   K   S    +LG    +R           +  LKPN +    +L
Sbjct: 457 CKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMIRRLKPNSVTLVCVL 516

Query: 523 S 523
           S
Sbjct: 517 S 517



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/358 (30%), Positives = 181/358 (50%), Gaps = 11/358 (3%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           + PSI   +LI  Y   GLIEEA T+F     RD+VSWT MI+GY +     +A   +  
Sbjct: 341 RDPSI-HNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQKALETYKM 399

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-C 161
           M    + P+  T++ VL AC  + +L     +H +A ++GL     V NSL+D+YA C C
Sbjct: 400 MEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLIDMYAKCKC 459

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
           I  D A  +F+    KN VSWT++I G   +   +  L  F+EM +  ++ N  +    +
Sbjct: 460 I--DKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREM-IRRLKPNSVTLVCVL 516

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDA-NQYFDEMTEKDL 280
            ACA  G ++ GK IHA  ++ G   +  + N+ILDMY R   +  A  Q+F    + ++
Sbjct: 517 SACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRMEYAWKQFFS--VDHEV 574

Query: 281 ITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
            +WN ++ GY E+   +    +F +M     SPN  TF SI+ AC+    ++ G +    
Sbjct: 575 TSWNILLTGYAERGKGAHATELFQRMVESNVSPNEVTFISILCACSRSGMVAEGLEYFNS 634

Query: 340 I-VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHGH 395
           +  +  +  NL     ++D+  + G + ++ +   +M  + D   W +++     H H
Sbjct: 635 MKYKYSIMPNLKHYACVVDLLGRSGKLEEAYEFIQKMPMKPDPAVWGALLNSCRIHHH 692


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 181/513 (35%), Positives = 301/513 (58%), Gaps = 5/513 (0%)

Query: 100 FVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
            + M    ++ N    ++VL  C   +++     VH   IK      +Y+   L+ V+  
Sbjct: 46  LLHMALRGLDTNFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLI-VFYV 104

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
            C S+ +AR VF+ M  +N VSWT +I+ Y+  G     L +F +ML  G E N ++F+ 
Sbjct: 105 KCDSLRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFAT 164

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
            + +C  +     G+ IH+ +IK  + +++ V +S+LDMY +   + +A   F  + E+D
Sbjct: 165 VLTSCIGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERD 224

Query: 280 LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           +++   II+GY + G   E L +F +++ E    N  T+TS++ A + LAAL  G+QVH 
Sbjct: 225 VVSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHN 284

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
            ++R  +   + L N+LIDMY+KCGN++ +++IF  + +R +++W +M++GY  HG G+E
Sbjct: 285 HLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGRE 344

Query: 399 AIELFDEMV-KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND--YNVNPNKEIYGC 455
            +ELF+ M+ ++ V+PD +  +AVL+ CSH GL D+G+  F  M     +V P+ + YGC
Sbjct: 345 VLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDSKHYGC 404

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM 515
           VVD+LGRAGRV+ A+E +K MPF+P  ++WG LLGAC  H   ++G+    ++L ++P  
Sbjct: 405 VVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHSNLDIGEFVGHQLLQIEPEN 464

Query: 516 MGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHT 575
            G Y+ILSN+YA+ G+WE+    R +M      KE G SWIE+   +  F A+D      
Sbjct: 465 AGNYVILSNLYASAGRWEDVRSLRNLMLKKAVTKEPGRSWIELDQVLHTFHASDCSHPRR 524

Query: 576 QYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           + V   ++ L     E  Y PD+ C++HD++ E
Sbjct: 525 EEVSAKVQELSARFKEAGYVPDLSCVLHDVDEE 557



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV-R 105
           +L  +LI  Y   G +  AR +FD + ER V+SW  M+ GY+      +   +F  M+  
Sbjct: 296 VLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDE 355

Query: 106 NEVNPNAFTLSSVLKAC 122
           N+V P++ T+ +VL  C
Sbjct: 356 NKVKPDSVTVLAVLSGC 372


>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
 gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
          Length = 513

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 194/509 (38%), Positives = 298/509 (58%), Gaps = 7/509 (1%)

Query: 80  WTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAI 139
           +  +++GY   +    A+ V+  +V++   P+ FT  +VLK+C     +     VHG+ I
Sbjct: 2   FNALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVII 61

Query: 140 KEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGL 199
           K G   +IYVENSL+  Y+ C    D +R VF++M  ++ VSWT +I+GY  +G     +
Sbjct: 62  KMGFVCNIYVENSLVHFYSVCKRFGDASR-VFDEMLVRDVVSWTGVISGYVRAGLFDEAV 120

Query: 200 GVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMY 259
           G+F  M    VE N  +F   + AC   G++S GK IH    K  FG  L V N+++DMY
Sbjct: 121 GLFLRM---DVEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMY 177

Query: 260 CRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFT 318
            +  CL  A Q FDE+ EKD+++W +II+G  +     E L +F  M+S    P+    T
Sbjct: 178 VKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILT 237

Query: 319 SIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR 378
           S+++ACA L AL  G+ VH  I R+ +  ++ +  A++DMYAKCG I  S +IF+ M  +
Sbjct: 238 SVLSACARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHK 297

Query: 379 DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYF 438
           +++TW +++ G   HGH  + +ELF+EMV+ G+RP+ + F+A+LTAC H GLV+EG +YF
Sbjct: 298 NVLTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACCHCGLVNEGRQYF 357

Query: 439 KSM--NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR 496
             M    YN+ P  E YGC+VDLL RA  + EA EL K+MP  PD  + G LL ACKE+ 
Sbjct: 358 NWMKGQQYNLPPRLEHYGCMVDLLCRARLLDEALELTKAMPMSPDVRIMGALLSACKENG 417

Query: 497 LPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWI 556
              L +    R ++L  +  G Y++LSNI+A   +W++  + R++M+  G KK  G + I
Sbjct: 418 NTELPQEILDRFVELDSHDSGVYVLLSNIHAINQRWDDVTRIRRLMKEKGIKKPPGSTVI 477

Query: 557 EVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           E+  K   FI  D      + +  +L++L
Sbjct: 478 ELDGKAHEFIVGDTRHPQDKRIRLLLKIL 506



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 86/273 (31%), Positives = 147/273 (53%), Gaps = 5/273 (1%)

Query: 64  EARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACK 123
           +A  +FDEM  RDVVSWT +I+GY      ++A  +F+ M   +V PNA T  SVL AC 
Sbjct: 87  DASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVGLFLRM---DVEPNAATFVSVLVACG 143

Query: 124 GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWT 183
               LS    +HG++ K      + V N+LMD+Y  C   +  A+ VF+++  K+ VSWT
Sbjct: 144 RKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMYVKCG-CLPGAKQVFDELAEKDIVSWT 202

Query: 184 TLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH 243
           ++I+G          L +F++M   G+E +    +  + ACA  G + +G+ +H  + + 
Sbjct: 203 SIISGLVQCNCPKEALELFQDMQSSGIEPDGIILTSVLSACARLGALDYGRWVHEHIDRK 262

Query: 244 GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMF 302
               ++ +  +++DMY +  C+  + Q F+ M  K+++TWN ++ G    G + + L +F
Sbjct: 263 AIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKNVLTWNALLNGLAMHGHAYKVLELF 322

Query: 303 SKMKSERFSPNCFTFTSIIAACATLAALSCGQQ 335
            +M      PN  TF +I+ AC     ++ G+Q
Sbjct: 323 EEMVRVGMRPNEVTFLAILTACCHCGLVNEGRQ 355



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 132/256 (51%), Gaps = 10/256 (3%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           ++  L+  Y   G +  A+ +FDE+ E+D+VSWT +I+G    NC  +A  +F +M  + 
Sbjct: 169 VSNALMDMYVKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSG 228

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDN 166
           + P+   L+SVL AC  + +L     VH    ++ ++  I +  +++D+YA C CI M  
Sbjct: 229 IEPDGIILTSVLSACARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEM-- 286

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           +  +FN M  KN ++W  L+ G A  G+ Y  L +F+EM+  G+  N  +F   + AC  
Sbjct: 287 SMQIFNGMPHKNVLTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACCH 346

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPV----MNSILDMYCRFDCLSDANQYFDEMT-EKDLI 281
            G V+ G+     +   G   NLP        ++D+ CR   L +A +    M    D+ 
Sbjct: 347 CGLVNEGRQYFNWM--KGQQYNLPPRLEHYGCMVDLLCRARLLDEALELTKAMPMSPDVR 404

Query: 282 TWNTIIAGYEKSGSSE 297
               +++  +++G++E
Sbjct: 405 IMGALLSACKENGNTE 420


>gi|218195864|gb|EEC78291.1| hypothetical protein OsI_18005 [Oryza sativa Indica Group]
          Length = 690

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 214/604 (35%), Positives = 330/604 (54%), Gaps = 16/604 (2%)

Query: 18  IPPIIKQSLQ-SVKKSSIQSDPPLIPKG---PSILATNLIKSYFDEGLIEEARTLFDEMP 73
           I  +++ S + S  +  +Q    L+  G    ++L  NLI  Y   G +  A  +FD MP
Sbjct: 7   IADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMP 66

Query: 74  ERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAAL 133
           ER+VVSWT ++ G+       +   +F EM  +  +PN FTLS+ LKAC G         
Sbjct: 67  ERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACGG--GTRAGVQ 124

Query: 134 VHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSG 193
           +HG+ ++ G EG   V NSL+ +Y+    + D AR VF+ +  +N  +W ++I+GYAH+G
Sbjct: 125 IHGVCVRTGFEGHDVVANSLVVMYSKGRWTGD-ARRVFDVIPSRNLATWNSMISGYAHAG 183

Query: 194 NGYGGLGVFKEMLLEGVEM-NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGF--GSNLP 250
            G   L VF+EM     E  + ++F+  ++AC+  G    G  +HAA+   G    SN  
Sbjct: 184 QGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAI 243

Query: 251 VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSER 309
           +  ++LD+Y +   L  A Q FD +  ++ I W T+I G+ + G   E + +F +  S  
Sbjct: 244 LAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSG 303

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
              +    +S++A  A  A +  G+QVH    +     ++++AN+L+DMY KCG   ++ 
Sbjct: 304 VRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAG 363

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
           + F EM  R++V+WT+M+ G G HGHG+EAI+LF+EM   GV  D + ++A+L+ACSH+G
Sbjct: 364 RRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSACSHSG 423

Query: 430 LVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPL 488
           LVDE  +YF  +  D  + P  E Y C+VDLLGRAG ++EA ELI SMP +P   VW  L
Sbjct: 424 LVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTL 483

Query: 489 LGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSK 548
           L AC+ H+   +G+     +L +  +    Y++LSNI A  G+W E    R  MR  G +
Sbjct: 484 LSACRVHKDVAVGREVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRGAMRRKGLR 543

Query: 549 KEVGMSWIEVRDKVCGFIANDKMGSHTQ---YVYGVLEMLIRHMNETAYEPDIDCLIHDL 605
           K+ G SW EV DK   F       +H Q       + E+  R      Y  D  C +HD+
Sbjct: 544 KQGGCSWTEV-DKEVHFFYGGGDDAHPQAGDIRRALREVEARMRERLGYSGDARCALHDV 602

Query: 606 EGET 609
           + E+
Sbjct: 603 DEES 606


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 205/564 (36%), Positives = 315/564 (55%), Gaps = 8/564 (1%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE-V 108
            +L+  Y   G + EAR LFD    ++VVSW  +I GY+        + +  EM R E V
Sbjct: 338 NSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKV 397

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
             N  T+ +VL AC G   L +   +HG A + G      V N+ +  YA C  S+D A 
Sbjct: 398 RVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCS-SLDCAE 456

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGG--LGVFKEMLLEGVEMNPYSFSIAVRACAS 226
            VF  M+ K   SW  LI   AH+ NG+ G  L +F  M+  G++ + ++    + ACA 
Sbjct: 457 RVFCGMEGKTVSSWNALIG--AHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACAR 514

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
             ++  GK IH  ++++G   +  +  S++ +Y +   +      FD+M  K L+ WN +
Sbjct: 515 LKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVM 574

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I G+ ++    E L+ F +M S    P     T ++ AC+ ++AL  G++VH+  ++  L
Sbjct: 575 ITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHL 634

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             +  +  ALIDMYAKCG +  SQ IF  ++++D   W  ++ GYG HGHG +AIELF+ 
Sbjct: 635 SEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFEL 694

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAG 464
           M   G RPD   F+ VL AC+HAGLV EGLKY   M N Y V P  E Y CVVD+LGRAG
Sbjct: 695 MQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAG 754

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           ++ EA +L+  MP +PD  +W  LL +C+ +    +G+  + ++L+L+PN    Y++LSN
Sbjct: 755 QLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVSKKLLELEPNKAENYVLLSN 814

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           +YA  GKW+E  K R+ M+  G  K+ G SWIE+   V  F+ +D   S ++ +      
Sbjct: 815 LYAGLGKWDEVRKVRQRMKENGLHKDAGCSWIEIGGMVYRFLVSDGSLSESKKIQQTWIK 874

Query: 585 LIRHMNETAYEPDIDCLIHDLEGE 608
           L + +++  Y+PD  C++H+LE E
Sbjct: 875 LEKKISKIGYKPDTSCVLHELEEE 898



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 121/451 (26%), Positives = 227/451 (50%), Gaps = 7/451 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + +   LI  Y   G +E A  +F+ M  R++VSW  ++   +      +   VF  ++ 
Sbjct: 230 AFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLI 289

Query: 106 NE---VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           +E   + P+  T+ +V+ AC  +  +    +VHG+A K G+   + V NSL+D+Y+ C  
Sbjct: 290 SEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGY 349

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLL-EGVEMNPYSFSIAV 221
            +  AR +F+    KN VSW T+I GY+  G+  G   + +EM   E V +N  +    +
Sbjct: 350 -LGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVL 408

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
            AC+    +   K IH    +HGF  +  V N+ +  Y +   L  A + F  M  K + 
Sbjct: 409 PACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVS 468

Query: 282 TWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           +WN +I  + ++G   + L++F  M      P+ FT  S++ ACA L  L CG+++H  +
Sbjct: 469 SWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFM 528

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           +R GL+ +  +  +L+ +Y +C ++   + IF +M ++ LV W  M+ G+  +    EA+
Sbjct: 529 LRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEAL 588

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLL 460
           + F +M+  G++P  I    VL ACS    +  G +        +++ +  +   ++D+ 
Sbjct: 589 DTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMY 648

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
            + G ++++  +   +  K DE+VW  ++  
Sbjct: 649 AKCGCMEQSQNIFDRVNEK-DEAVWNVIIAG 678



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 208/388 (53%), Gaps = 11/388 (2%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR- 105
           +L+T +I  Y   G   ++R +FD   E+D+  +  +++GY+       A ++F+E++  
Sbjct: 129 VLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSA 188

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
            ++ P+ FTL  V KAC G+  +     VH +A+K G     +V N+L+ +Y  C   ++
Sbjct: 189 TDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGF-VE 247

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGG--LGVFKEMLL---EGVEMNPYSFSIA 220
           +A  VF  M+ +N VSW +++  YA S NG  G   GVFK +L+   EG+  +  +    
Sbjct: 248 SAVKVFETMRNRNLVSWNSVM--YACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTV 305

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           + ACA+ G V  G ++H    K G    + V NS++DMY +   L +A   FD    K++
Sbjct: 306 IPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNV 365

Query: 281 ITWNTIIAGYEKSGSSE-CLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           ++WNTII GY K G       +  +M + E+   N  T  +++ AC+    L   +++H 
Sbjct: 366 VSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHG 425

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
              R G   +  +ANA +  YAKC ++  ++++F  M  + + +W +++  +  +G   +
Sbjct: 426 YAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGK 485

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACS 426
           +++LF  M+ SG+ PDR    ++L AC+
Sbjct: 486 SLDLFLVMMDSGMDPDRFTIGSLLLACA 513



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 126/494 (25%), Positives = 230/494 (46%), Gaps = 58/494 (11%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++A   + +Y     ++ A  +F  M  + V SW  +I  +       ++  +F+ M+ +
Sbjct: 437 LVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDS 496

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            ++P+ FT+ S+L AC  +K L     +HG  ++ GLE   ++  SLM +Y  C  SM  
Sbjct: 497 GMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCS-SMLL 555

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
            +L+F+ M+ K+ V W  +ITG++ +      L  F++ML  G++    + +  + AC+ 
Sbjct: 556 GKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQ 615

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  GK +H+  +K     +  V  +++DMY +  C+  +   FD + EKD   WN I
Sbjct: 616 VSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVI 675

Query: 287 IAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           IAGY   G   + + +F  M+++   P+ FTF  ++ AC            HAG+V  GL
Sbjct: 676 IAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACN-----------HAGLVTEGL 724

Query: 346 DGNLALAN------------ALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGA 392
                + N             ++DM  + G ++++ K+ +EM D  D   W+S++     
Sbjct: 725 KYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRN 784

Query: 393 HGHGKEAIELFDEMVKS--GVRPDRIVFMAVLTACSHAGLV--DEGLKYFKSMNDYNVNP 448
           +G     +E+ +E+ K    + P++     +L+   +AGL   DE  K  + M +  ++ 
Sbjct: 785 YGD----LEIGEEVSKKLLELEPNKAENYVLLSNL-YAGLGKWDEVRKVRQRMKENGLHK 839

Query: 449 NK-----EIYGCVVDLLGRAGRVKEAYEL----------IKSMPFKPDESVWGPLLGACK 493
           +      EI G V   L   G + E+ ++          I  + +KPD S        C 
Sbjct: 840 DAGCSWIEIGGMVYRFLVSDGSLSESKKIQQTWIKLEKKISKIGYKPDTS--------CV 891

Query: 494 EHRLPNLGKLAALR 507
            H L   GK+  L+
Sbjct: 892 LHELEEEGKIKILK 905



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 166/317 (52%), Gaps = 10/317 (3%)

Query: 118 VLKACKGMKSLSNAALVHGM-AIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW 176
           +L+AC   K++     VH + +    L   + +   ++ +Y+ C  S  ++R VF+  K 
Sbjct: 98  LLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACG-SPSDSRGVFDAAKE 156

Query: 177 KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI--AVRACASTGWVSFGK 234
           K+   +  L++GY+ +      + +F E LL   ++ P +F++    +ACA    V  G+
Sbjct: 157 KDLFLYNALLSGYSRNALFRDAISLFLE-LLSATDLAPDNFTLPCVAKACAGVADVELGE 215

Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII-AGYEKS 293
            +HA  +K G  S+  V N+++ MY +   +  A + F+ M  ++L++WN+++ A  E  
Sbjct: 216 AVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENG 275

Query: 294 GSSECLNMFSKM---KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           G  EC  +F ++   + E   P+  T  ++I ACA +  +  G  VH    + G+   + 
Sbjct: 276 GFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVT 335

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK-S 409
           + N+L+DMY+KCG + +++ +F     +++V+W +++ GY   G  +   EL  EM +  
Sbjct: 336 VNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREE 395

Query: 410 GVRPDRIVFMAVLTACS 426
            VR + +  + VL ACS
Sbjct: 396 KVRVNEVTVLNVLPACS 412


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 182/491 (37%), Positives = 299/491 (60%), Gaps = 3/491 (0%)

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + P     S +L  C  ++ L     +H        E  + + N ++++YA C  S++ A
Sbjct: 101 LEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCG-SLEEA 159

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           + +F+ M  K+ VSWT LI+GY+ SG     L +F +ML  G + N ++ S  ++A  + 
Sbjct: 160 QDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTG 219

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
                G+ +HA  +K+G+  N+ V +S+LDMY R+  + +A   F+ +  K++++WN +I
Sbjct: 220 PSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALI 279

Query: 288 AGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           AG+ + G  E  + +F +M  + F P  FT++S++A CA+  +L  G+ VHA +++ G  
Sbjct: 280 AGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVLA-CASSGSLEQGKWVHAHVIKSGGQ 338

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
               + N LIDMYAK G+I D++K+F  +  +D+V+W S++ GY  HG G EA++LF++M
Sbjct: 339 PIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQM 398

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
           +K+ V+P+ I F++VLTACSH+GL+DEG  YF+ M  + +      +  VVDLLGRAGR+
Sbjct: 399 LKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRL 458

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            EA + I+ MP KP  +VWG LLGAC+ H+  +LG  AA ++ +L P+  G +++LSNIY
Sbjct: 459 NEANKFIEEMPIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIY 518

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           A+ G+  + AK RK+M+  G KKE   SW+E+ ++V  F+AND      + +  + E + 
Sbjct: 519 ASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKIS 578

Query: 587 RHMNETAYEPD 597
             + E  Y PD
Sbjct: 579 GKIKEIGYVPD 589



 Score =  214 bits (546), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 113/330 (34%), Positives = 193/330 (58%), Gaps = 3/330 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +L   ++  Y   G +EEA+ LFD+MP +D+VSWTV+I+GY+     ++A  +F +M+  
Sbjct: 141 VLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHL 200

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
              PN FTLSS+LKA     S  +   +H  ++K G + +++V +SL+D+YA     M  
Sbjct: 201 GFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWA-HMRE 259

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A+++FN +  KN VSW  LI G+A  G G   + +F +ML +G E   +++S +V ACAS
Sbjct: 260 AKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYS-SVLACAS 318

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
           +G +  GK +HA VIK G      + N+++DMY +   + DA + F  + ++D+++WN+I
Sbjct: 319 SGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSI 378

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+GY + G  +E L +F +M   +  PN  TF S++ AC+    L  GQ     + +  +
Sbjct: 379 ISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKI 438

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEM 375
           +  +A    ++D+  + G ++++ K   EM
Sbjct: 439 EAQVAHHVTVVDLLGRAGRLNEANKFIEEM 468


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 189/565 (33%), Positives = 316/565 (55%), Gaps = 6/565 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++   L+ +Y   GL+  AR +F EMP RD V++  M+ G +    H +A  +F  M R 
Sbjct: 176 VVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEGSHAEALDLFAAMRRK 235

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMD 165
            +    FT S+VL    G+  L     VHG+ +      +++V NSL+D Y+ C C  +D
Sbjct: 236 GLAATRFTFSTVLTVATGVGDLCLGRQVHGL-VARATSSNVFVNNSLLDFYSKCDC--LD 292

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
             + +F++M  +++VS+  +I GYA +      L +F+EM     +     ++  +    
Sbjct: 293 EMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQALPYASLLSVAG 352

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           S   +  GK IHA ++  G  S   V N+++DMY +   L  A   F    +K  ++W  
Sbjct: 353 SVPHIGIGKQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNFINKNDKTGVSWTA 412

Query: 286 IIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I G  ++G  E  L +F  M+    SP+  TF+S I A + LA +  G+Q+H+ ++R G
Sbjct: 413 MITGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQLHSYLIRSG 472

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
              ++   +AL+DMY KCG + ++ + F EM +R+ ++W +++  Y  +G  K AI++F+
Sbjct: 473 HMSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYAHYGQAKNAIKMFE 532

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRA 463
            M+  G +PD + F++VL+ACSH GL +E +KYF+ M  +Y ++P KE Y CV+D LGR 
Sbjct: 533 GMLCYGFKPDSVTFLSVLSACSHNGLAEECMKYFELMEYEYGISPWKEHYSCVIDTLGRV 592

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           GR  +  E++  MPF+ D  +W  +L +C+ H   +L ++AA ++  +       Y+ILS
Sbjct: 593 GRFDKVQEMLGEMPFEDDPIIWSSILHSCRTHGNQDLARVAAEKLFSMGSTDATPYVILS 652

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           NI+A  GKWE+ A  +KIMR  G +KE G SW+EV+ KV  F +ND+       +   LE
Sbjct: 653 NIFAKAGKWEDAAGVKKIMRDRGLRKETGYSWVEVKHKVYSFSSNDQTNPMITEIKDELE 712

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGE 608
            L + M++  Y+PD  C +  ++ +
Sbjct: 713 RLYKEMDKQGYKPDTSCTLQQVDDD 737



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 105/212 (49%), Gaps = 13/212 (6%)

Query: 230 VSFGKLIHAAVI--KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE--KDLITWNT 285
           +S G+L  A  +  +    +N   +N +L  Y R   LS A+  F       +D +TW  
Sbjct: 45  ISSGRLAQARALFDQMPHRNNAFSLNRMLSGYSRSGQLSAAHHLFLSSPPHLRDAVTWTV 104

Query: 286 IIAGYEKSG---SSECLNMFSKMKSERFSPNCFTFTSII----AACATLAALSCGQQVHA 338
           +I  +  +    +S+ +++F  M  E  +P+  T  +++    A+  T AA+     +H 
Sbjct: 105 MIGAFASAPGARASDAVSLFRDMLREGVAPDRVTVATVLNLPPASGGTAAAIIIAS-LHP 163

Query: 339 GIVRRGL-DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
             ++ GL   N+ + N L+D Y K G ++ ++++F EM  RD VT+ +MM+G    G   
Sbjct: 164 FALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEGSHA 223

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
           EA++LF  M + G+   R  F  VLT  +  G
Sbjct: 224 EALDLFAAMRRKGLAATRFTFSTVLTVATGVG 255


>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Vitis vinifera]
          Length = 629

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 190/558 (34%), Positives = 325/558 (58%), Gaps = 13/558 (2%)

Query: 50  TNLIKSYFDEGLIEEARTLF-DEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108
           T+LI  Y     +  A ++F D   E +V ++  +I+G+ +     + +  + +M    V
Sbjct: 76  TSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGV 135

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
            P+ FT    +KAC  +  +     +HG+  K GLE  +++ ++L++ Y    + M++A+
Sbjct: 136 IPDKFTFPCAIKACLDVLEIKK---IHGLLFKFGLELDVFIGSALVNCYLKFGL-MEHAQ 191

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
           + F ++  ++ V W  ++ GYA  G     L  F+ M  E V  + ++ +  +   A  G
Sbjct: 192 VAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMG 251

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            ++ G++IH   +K G+ S + V NS++DMY +  C+ DA + F+ M EKD+ +WN+I++
Sbjct: 252 DLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVS 311

Query: 289 GYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL-- 345
            +E+ G  +  L +  +M      P+  T T+++ AC+ LAAL  G+++H  ++  GL  
Sbjct: 312 VHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGK 371

Query: 346 DG----NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           DG    ++ L NA+IDMYAKCG++ D+  +F  MS++D+ +W  M++GYG HG+G EA+E
Sbjct: 372 DGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALE 431

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLL 460
           +F  M +  ++PD + F+ VL+ACSHAG V +G  +   M + Y+V P  E Y CV+D+L
Sbjct: 432 MFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDML 491

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520
           GRAG++ EAYEL  +MP + +  VW  LL AC+ H+   L ++AA RV +L+P   G+Y+
Sbjct: 492 GRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYV 551

Query: 521 ILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYG 580
           ++SN+Y A G++EE  + R  MR    +K  G SWIE+++ V  F++ D+       +Y 
Sbjct: 552 LMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIELKNGVHVFVSADRAHPEAHSIYA 611

Query: 581 VLEMLIRHMNETAYEPDI 598
            L  L   + E  Y PD+
Sbjct: 612 GLNSLTARLREHGYVPDV 629



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 100/359 (27%), Positives = 181/359 (50%), Gaps = 12/359 (3%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + + L+  Y   GL+E A+  F+E+P RDVV W  M+ GY            F  M    
Sbjct: 173 IGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDES 232

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDN 166
           V P+ FT++ VL     M  L+N  ++HG A+K G +  + V NSL+D+Y  C CI  ++
Sbjct: 233 VVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCI--ED 290

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  +F  M+ K+  SW ++++ +   G+  G L +   ML  G++ +  + +  + AC+ 
Sbjct: 291 ALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSH 350

Query: 227 TGWVSFGKLIHAAVIKHGFG------SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
              +  G+ IH  +I  G G       ++ + N+++DMY +   + DA+  F+ M+ KD+
Sbjct: 351 LAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDV 410

Query: 281 ITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
            +WN +I GY   G  +E L MFS+M   +  P+  TF  +++AC+    +S G+     
Sbjct: 411 ASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQ 470

Query: 340 IVRR-GLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHG 396
           +  +  +   +     +IDM  + G + ++ ++   M  + + V W +++     H H 
Sbjct: 471 MKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHA 529



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 156/324 (48%), Gaps = 25/324 (7%)

Query: 213 NPYSFSIAV---RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDAN 269
            PY+ +  +   +A A    +S GK IH+ ++ +GF ++   + S+++MY + + ++ A 
Sbjct: 33  QPYNLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFAL 92

Query: 270 QYFDEMT-EKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATL 327
             F + T E ++  +N II+G+  +G   E    + KM++E   P+ FTF   I AC  +
Sbjct: 93  SIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDV 152

Query: 328 AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMM 387
             +   +++H  + + GL+ ++ + +AL++ Y K G +  +Q  F E+  RD+V W +M+
Sbjct: 153 LEI---KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMV 209

Query: 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN 447
            GY   G  +  +E F  M    V P R     VL+  +  G ++ G            +
Sbjct: 210 NGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYD 269

Query: 448 PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA---CKEHRLPNLGKLA 504
               +   ++D+ G+   +++A E+ + M  K D   W  ++     C +H         
Sbjct: 270 SGVAVSNSLIDMYGKCKCIEDALEIFEMMREK-DIFSWNSIVSVHEQCGDHD-------G 321

Query: 505 ALRVLD------LKPNMMGTYIIL 522
            LR+LD      ++P+++    +L
Sbjct: 322 TLRLLDRMLGAGIQPDLVTVTTVL 345



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 38/76 (50%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +L   +I  Y   G + +A  +F+ M  +DV SW +MI GY      N+A  +F  M   
Sbjct: 380 LLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEV 439

Query: 107 EVNPNAFTLSSVLKAC 122
           ++ P+  T   VL AC
Sbjct: 440 QLKPDEVTFVGVLSAC 455


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 199/600 (33%), Positives = 334/600 (55%), Gaps = 36/600 (6%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P    +   +L+ +    GL+ +   LF  +P+RD VS+  ++AG++    H +A   +
Sbjct: 72  MPGRNLVTGNSLLSALARAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAY 131

Query: 101 VEMVRNE--VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA 158
           V ++R+E  V P+  T+S V+     +   +    VH   ++ G     +  + L+D+YA
Sbjct: 132 VALLRDEAGVRPSRITMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYA 191

Query: 159 TCCISMDNARLVFNDMKWKN-------------------------------DVSWTTLIT 187
                + +AR VF++M+ KN                                ++WTT++T
Sbjct: 192 KVG-PIGDARRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVT 250

Query: 188 GYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGS 247
           G   +G     L VF+ M  EGV ++ Y+F   + AC +   +  GK IHA + +  +  
Sbjct: 251 GLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYED 310

Query: 248 NLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMK 306
           N+ V ++++DMY +   +  A   F  M  K++I+W  +I GY ++G   E + +FS+M+
Sbjct: 311 NVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQ 370

Query: 307 SERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNIS 366
            +   P+ FT  S+I++CA LA+L  G Q H   +  GL   + ++NAL+ +Y KCG+I 
Sbjct: 371 RDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIE 430

Query: 367 DSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS 426
           D+ ++F EMS  D V+WT++++GY   G  KE I+LF++M+  GV+PD + F+ VL+ACS
Sbjct: 431 DAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACS 490

Query: 427 HAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVW 485
            +GLVD+G  YF SM  D+++ P  + Y C++DL  R+G +K+A E IK MP  PD   W
Sbjct: 491 RSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGW 550

Query: 486 GPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545
             LL AC+      +GK AA  +L L P    +Y++L +++A++G+W + AK R+ MR  
Sbjct: 551 ATLLSACRLRGDMEIGKWAAENLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRRGMRDR 610

Query: 546 GSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDL 605
             KKE G SWI+ ++KV  F A+D+    ++ +Y  L+ L   M E  Y+PD+  ++HD+
Sbjct: 611 QVKKEPGCSWIKYKNKVHIFSADDQSHPFSRTIYEKLQWLNSKMVEEGYKPDVSSVLHDV 670



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 129/288 (44%), Gaps = 35/288 (12%)

Query: 227 TGWVSFGKLIHAAVIKHGF-GSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           T + S G L HA  +     G NL   NS+L    R   + D  + F  + ++D +++N 
Sbjct: 54  TAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAGLVRDMERLFTSLPQRDAVSYNA 113

Query: 286 IIAGYEKSGSSECLNM--FSKMKSER-FSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           ++AG+ ++G+         + ++ E    P+  T + ++   + L   + G+QVH  I+R
Sbjct: 114 LLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVASALGDRALGRQVHCQILR 173

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEM--------------------------- 375
            G        + L+DMYAK G I D++++F EM                           
Sbjct: 174 LGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLRCKMVAEARAL 233

Query: 376 ----SDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLV 431
                +RD +TWT+M+ G   +G   EA+++F  M   GV  D+  F ++LTAC     +
Sbjct: 234 FEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAAL 293

Query: 432 DEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
           +EG +    +       N  +   +VD+  +   V+ A  + + M +K
Sbjct: 294 EEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWK 341


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 192/566 (33%), Positives = 323/566 (57%), Gaps = 9/566 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +L +N++K YF    +E+AR +FD MPE+D + W  MI+GY     + ++  VF +++  
Sbjct: 155 LLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINE 214

Query: 107 E-VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC-ISM 164
                +  TL  +L A   ++ L     +H +A K G     YV    + +Y+ C  I M
Sbjct: 215 SCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKM 274

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
            +A  +F + +  + V++  +I GY  +G     L +FKE++L G  +     S  V   
Sbjct: 275 GSA--LFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRS---STLVSLV 329

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
             +G +     IH   +K  F S+  V  ++  +Y + + +  A + FDE  EK L +WN
Sbjct: 330 PVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWN 389

Query: 285 TIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +I+GY ++G +E  +++F +M+   FSPN  T T I++ACA L ALS G+ VH  +   
Sbjct: 390 AMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRST 449

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
             + ++ ++ ALI MYAKCG+I++++++F  M+ ++ VTW +M+ GYG HG G+EA+ +F
Sbjct: 450 DFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIF 509

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGR 462
            EM+ SG+ P  + F+ VL ACSHAGLV EG + F SM + Y   P+ + Y C+VD+LGR
Sbjct: 510 YEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGR 569

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AG ++ A + I++M  +P  SVW  LLGAC+ H+  NL +  + ++ +L P+ +G +++L
Sbjct: 570 AGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLL 629

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           SNI++A+  + + A  R+  +     K  G + IE+ +    F + D+     + +Y  L
Sbjct: 630 SNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKL 689

Query: 583 EMLIRHMNETAYEPDIDCLIHDLEGE 608
           E L   M E  Y+P+ +  +HD+E E
Sbjct: 690 EKLEGKMREAGYQPETELALHDVEEE 715



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 101/451 (22%), Positives = 212/451 (47%), Gaps = 8/451 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN- 106
           L T L +   D G I  AR +F  +   DV  + V++ G++     + + +VF  + ++ 
Sbjct: 54  LLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKST 113

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           ++ PN+ T +  + A  G +      ++HG A+ +G +  + + ++++ +Y      +++
Sbjct: 114 DLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFW-RVED 172

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG-VEMNPYSFSIAVRACA 225
           AR VF+ M  K+ + W T+I+GY  +      + VF++++ E    ++  +    + A A
Sbjct: 173 ARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVA 232

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               +  G  IH+   K G  S+  V+   + +Y +   +   +  F E  + D++ +N 
Sbjct: 233 ELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNA 292

Query: 286 IIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I GY  +G +E  L++F ++          T  S++     L  +     +H   ++  
Sbjct: 293 MIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYA---IHGYCLKSN 349

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
              + +++ AL  +Y+K   I  ++K+F E  ++ L +W +M+ GY  +G  ++AI LF 
Sbjct: 350 FLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFR 409

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
           EM KS   P+ +    +L+AC+  G +  G      +   +   +  +   ++ +  + G
Sbjct: 410 EMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCG 469

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            + EA  L   M  K +E  W  ++     H
Sbjct: 470 SIAEARRLFDLMT-KKNEVTWNTMISGYGLH 499



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 111/466 (23%), Positives = 208/466 (44%), Gaps = 43/466 (9%)

Query: 123 KGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSW 182
           K   S+S+ A  H   I  G    I +   L    +    ++  AR +F  ++  +   +
Sbjct: 28  KRSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLG-AIYYARDIFLSVQRPDVFLF 86

Query: 183 TTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS--FGKLIHAAV 240
             L+ G++ + + +  L VF   L +  ++ P S + A    A++G+     G++IH   
Sbjct: 87  NVLMRGFSVNESPHSSLSVFAH-LRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQA 145

Query: 241 IKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECL 299
           +  G  S L + ++I+ MY +F  + DA + FD M EKD I WNT+I+GY K+    E +
Sbjct: 146 VVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESI 205

Query: 300 NMFSKMKSERFSP-NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDM 358
            +F  + +E  +  +  T   I+ A A L  L  G Q+H+   + G   +  +    I +
Sbjct: 206 QVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISL 265

Query: 359 YAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVF 418
           Y+KCG I     +F E    D+V + +M+ GY ++G  + ++ LF E++ SG R      
Sbjct: 266 YSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTL 325

Query: 419 MAVLTAC-------------------SHAGLVDEGLKYFKSMND-------YNVNPNKEI 452
           ++++                      SHA +       +  +N+       ++ +P K +
Sbjct: 326 VSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSL 385

Query: 453 --YGCVVDLLGRAGRVKEAYELIKSMP---FKPDESVWGPLLGACKEHRLPNLGKLA--A 505
             +  ++    + G  ++A  L + M    F P+      +L AC +    +LGK     
Sbjct: 386 PSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDL 445

Query: 506 LRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEV 551
           +R  D + ++  +  ++  +YA  G     A+ R++   M  K EV
Sbjct: 446 VRSTDFESSIYVSTALI-GMYAKCGS---IAEARRLFDLMTKKNEV 487


>gi|356558692|ref|XP_003547637.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Glycine max]
          Length = 696

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 208/654 (31%), Positives = 339/654 (51%), Gaps = 83/654 (12%)

Query: 25  SLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDV---VSWT 81
           +LQ  ++   Q       + P  LA  LI  Y     +  AR +FD +P   +   + W 
Sbjct: 43  TLQQARQLHSQLVLTTAHRLP-FLAARLIAVYARFAFLSHARKVFDAIPLESLHHLLLWN 101

Query: 82  VMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKE 141
            +I    S   H  A  ++VEM +    P+ FTL  V++AC  + S     +VH  A++ 
Sbjct: 102 SIIRANVSHGYHQHALELYVEMRKLGFLPDGFTLPLVIRACSSLGSSYLCRIVHCHALQM 161

Query: 142 GLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGV 201
           G    ++V N L+ +Y      M++AR +F+ M  ++ VSW T+++GYA + +  G   V
Sbjct: 162 GFRNHLHVVNELVGMYGKLG-RMEDARQLFDGMFVRSIVSWNTMVSGYALNRDSLGASRV 220

Query: 202 FKEMLLEG-----------------------------------VEMNPYSFSIAVRACAS 226
           FK M LEG                                   +E+   + ++ +  CA 
Sbjct: 221 FKRMELEGLQPNSVTWTSLLSSHARCGLYDETLELFKVMRTRGIEIGAEALAVVLSVCAD 280

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              V +GK IH  V+K G+   L V N+++  Y +   + DA++ F E+  K+L++WN +
Sbjct: 281 MAEVDWGKEIHGYVVKGGYEDYLFVKNALIGTYGKHQHMGDAHKVFLEIKNKNLVSWNAL 340

Query: 287 IAGYEKSG------------------------------------------SSECLNMFSK 304
           I+ Y +SG                                            + L +F +
Sbjct: 341 ISSYAESGLCDEAYAAFLHMEKSDSDDHSLVRPNVISWSAVISGFAYKGRGEKSLELFRQ 400

Query: 305 MKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGN 364
           M+  +   NC T +S+++ CA LAAL+ G+++H   +R  +  N+ + N LI+MY KCG+
Sbjct: 401 MQLAKVMANCVTISSVLSVCAELAALNLGRELHGYAIRNMMSDNILVGNGLINMYMKCGD 460

Query: 365 ISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTA 424
             +   +F  +  RDL++W S++ GYG HG G+ A+  F+EM+++ ++PD I F+A+L+A
Sbjct: 461 FKEGHLVFDNIEGRDLISWNSLIGGYGMHGLGENALRTFNEMIRARMKPDNITFVAILSA 520

Query: 425 CSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDES 483
           CSHAGLV  G   F  M  ++ + PN E Y C+VDLLGRAG +KEA +++++MP +P+E 
Sbjct: 521 CSHAGLVAAGRNLFDQMVTEFRIEPNVEHYACMVDLLGRAGLLKEATDIVRNMPIEPNEY 580

Query: 484 VWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMR 543
           VWG LL +C+ ++  ++ +  A ++L LK  + G++++LSNIYAA G+W++ A+ R   R
Sbjct: 581 VWGALLNSCRMYKDMDIVEETASQILTLKSKITGSFMLLSNIYAANGRWDDSARVRVSAR 640

Query: 544 GMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPD 597
             G KK  G SWIEVR KV  F A + +    + +Y +LE L  HM    Y+ D
Sbjct: 641 TKGLKKIPGQSWIEVRKKVYTFSAGNLVHFGLEDIYVILEELNLHMASENYKLD 694


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 184/495 (37%), Positives = 298/495 (60%), Gaps = 5/495 (1%)

Query: 118 VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK 177
           +L  C   +++     VH   IK      +Y+   L+ +Y T C  +  AR VF++M+ +
Sbjct: 16  LLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILY-TKCECLGCARHVFDEMRER 74

Query: 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIH 237
           N VSWT +I+GY+  G     L +F +ML    E N ++F+  + +C        G+ IH
Sbjct: 75  NVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIH 134

Query: 238 AAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SS 296
           + + K  + +++ V +S+LDMY +   + +A   F+ + E+D+++   II+GY + G   
Sbjct: 135 SHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 194

Query: 297 ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALI 356
           E L +F +++ E  S N  T+ S++ A + LAAL  G+QVH+ ++R  L   + L N+LI
Sbjct: 195 EALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLI 254

Query: 357 DMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG-VRPDR 415
           DMY+KCGN++ ++KIF+ M  R +++W +M++GY  HG G E ++LF  M +   V+PD 
Sbjct: 255 DMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDS 314

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSMND--YNVNPNKEIYGCVVDLLGRAGRVKEAYELI 473
           + F+AVL+ CSH GL D+GL+ F  M +    +    E YGCV+DLLGRAGRV+EA+ELI
Sbjct: 315 VTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELI 374

Query: 474 KSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWE 533
           K MPF+P  ++WG LLGAC+ H   N+G+    R+L+++P   G Y+ILSN+YA+ G+WE
Sbjct: 375 KKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASAGRWE 434

Query: 534 EFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETA 593
           +    R++M      KE G SWIE+   +  F A+D+     + V+  +  L+    E+ 
Sbjct: 435 DVRNVRELMMEKAVIKEPGRSWIELDQTIHTFYASDRSHPRREEVFLKVRELLVKFKESG 494

Query: 594 YEPDIDCLIHDLEGE 608
           Y PD  C+++D++ E
Sbjct: 495 YVPDQSCVLYDVDEE 509



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 182/348 (52%), Gaps = 6/348 (1%)

Query: 45  PSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
           P  L+T LI  Y     +  AR +FDEM ER+VVSWT MI+GY+     ++A  +FV+M+
Sbjct: 44  PVYLSTRLIILYTKCECLGCARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQML 103

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
           R++  PN FT ++VL +C G         +H    K   E  I+V +SL+D+YA     +
Sbjct: 104 RSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAG-RI 162

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
             AR VF  +  ++ VS T +I+GYA  G     L +F  +  EG+  N  +++  + A 
Sbjct: 163 HEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTAL 222

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           +    +  GK +H+ V++      + + NS++DMY +   L+ A + F+ M  + +I+WN
Sbjct: 223 SGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWN 282

Query: 285 TIIAGYEKSGSS-ECLNMFSKMKSE-RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
            ++ GY K G   E + +F  M+ E +  P+  TF ++++ C+       G ++   ++ 
Sbjct: 283 AMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMN 342

Query: 343 RG--LDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMM 387
            G  ++  +     +ID+  + G + ++ ++  +M  +     W S++
Sbjct: 343 GGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIWGSLL 390



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 187/352 (53%), Gaps = 4/352 (1%)

Query: 205 MLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264
           M ++G E+    +++ +  C +   V  G+ +HA +IK  +   + +   ++ +Y + +C
Sbjct: 1   MAIQGPEIKFDGYNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCEC 60

Query: 265 LSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAA 323
           L  A   FDEM E+++++W  +I+GY + G +SE L++F +M      PN FTF +++++
Sbjct: 61  LGCARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSS 120

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTW 383
           C   +    G+Q+H+ I +R  + ++ + ++L+DMYAK G I +++ +F  + +RD+V+ 
Sbjct: 121 CTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 180

Query: 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND 443
           T+++ GY   G  +EA+ELF  + + G+  + + + ++LTA S    +D G +    +  
Sbjct: 181 TAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLR 240

Query: 444 YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKL 503
             +     +   ++D+  + G +  A ++  +MP +   S    L+G  K  +   + KL
Sbjct: 241 CELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKL 300

Query: 504 AALRVLD--LKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGM 553
             L   +  +KP+ +    +LS       + +    F ++M G G + E G+
Sbjct: 301 FKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNG-GDEIEAGI 351


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 188/522 (36%), Positives = 298/522 (57%), Gaps = 16/522 (3%)

Query: 87  YTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGS 146
           Y   +  N+++ +F +M    + PN FT  S+LK C  + +      +H   +K G + +
Sbjct: 413 YGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFN 472

Query: 147 IYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEML 206
           +YV + L+D+YA     +D+A  +F  +K  + VSWT +I GY         L +FKEM 
Sbjct: 473 VYVSSVLIDMYAKHG-KLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQ 531

Query: 207 LEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLS 266
            +G++ +   F+ A+ ACA    +  G+ IHA     G+  +L + N+++ +Y R   + 
Sbjct: 532 DQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVR 591

Query: 267 DANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACA 325
           +A   FD++  KD ++WN++++G+ +SG   E LN+F++M       N FTF S ++A A
Sbjct: 592 EAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAA 651

Query: 326 TLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTS 385
            +A +  G+Q+H  I + G D    ++NALI +YAKCG I D             ++W S
Sbjct: 652 NIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTIDD-------------ISWNS 698

Query: 386 MMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-Y 444
           M+ GY  HG G EA++LF++M +  V P+ + F+ VL+ACSH GLVDEG+ YF+SM++ +
Sbjct: 699 MITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAH 758

Query: 445 NVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLA 504
           N+ P  E Y CVVDLLGR+G +  A   ++ MP +PD  VW  LL AC  H+  ++G+ A
Sbjct: 759 NLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFA 818

Query: 505 ALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCG 564
           A  +L+L+P    TY+++SN+YA  GKW+   + R++M+  G KKE G SW+EV + V  
Sbjct: 819 ASHLLELEPKDSATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDNSVHA 878

Query: 565 FIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
           F A D+       +Y  L  L     E  Y P  + L+ D E
Sbjct: 879 FFAGDQNHPRADMIYEYLRGLDFRAAENGYVPRCNSLLSDAE 920



 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/447 (28%), Positives = 226/447 (50%), Gaps = 30/447 (6%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           +  + +   LI  YF  G +  A+ +F+ +  RD VSW  MI+G +      +A  +F +
Sbjct: 196 ESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQ 255

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           +              VL AC  ++       +HG+ +K+G     YV N+L+ +Y+    
Sbjct: 256 I--------------VLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSG- 300

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
           ++ +A  +F+ M  ++ VS+ +LI+G A  G     L +FK+M L+  + +  + +  + 
Sbjct: 301 NLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLS 360

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           ACAS G +  GK  H+  IK G  S++ V  S+LD+Y +   +  A+++F    + D + 
Sbjct: 361 ACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQLDNL- 419

Query: 283 WNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
                        ++   +F++M+ E   PN FT+ SI+  C TL A   G+Q+H  +++
Sbjct: 420 -------------NKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLK 466

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            G   N+ +++ LIDMYAK G +  + KIF  + + D+V+WT+M+ GY  H    EA+ L
Sbjct: 467 TGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNL 526

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           F EM   G++ D I F + ++AC+    +D+G +          + +  I   +V L  R
Sbjct: 527 FKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYAR 586

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLL 489
            G+V+EAY     + +  D   W  L+
Sbjct: 587 CGKVREAYAAFDQI-YAKDNVSWNSLV 612



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 109/446 (24%), Positives = 213/446 (47%), Gaps = 33/446 (7%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y   G +  A  +FDEMP R +  W  +   + +     +   +F  M+   V  +
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFD 162

Query: 112 AFTLSSVLKACKGMK-SLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
               + VL+ C G   S      +H   I  G E S ++ N L+D+Y      + +A+ V
Sbjct: 163 ERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGF-LSSAKKV 221

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F ++K ++ VSW  +I+G + +G     + +F +++L               AC    + 
Sbjct: 222 FENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQIVLS--------------ACTKVEFF 267

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
            FGK +H  V+K GF S   V N+++ +Y R   LS A Q F  M+++D +++N++I+G 
Sbjct: 268 EFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGL 327

Query: 291 EKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
            + G  +  L +F KM  +   P+C T  S+++ACA++ AL  G+Q H+  ++ G+  ++
Sbjct: 328 AQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDI 387

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
            +  +L+D+Y KC +I  + + F               + YG   +  ++ ++F +M   
Sbjct: 388 VVEGSLLDLYVKCSDIKTAHEFF---------------LCYGQLDNLNKSFQIFTQMQIE 432

Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
           G+ P++  + ++L  C+  G  D G +    +       N  +   ++D+  + G++  A
Sbjct: 433 GIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHA 492

Query: 470 YELIKSMPFKPDESVWGPLLGACKEH 495
            ++ + +  + D   W  ++    +H
Sbjct: 493 LKIFRRLK-ENDVVSWTAMIAGYTQH 517



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 175/360 (48%), Gaps = 39/360 (10%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +++ LI  Y   G ++ A  +F  + E DVVSWT MIAGYT  +   +A  +F EM    
Sbjct: 475 VSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQG 534

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           +  +    +S + AC G+++L     +H  +   G    + + N+L+ +YA C   +  A
Sbjct: 535 IKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCG-KVREA 593

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
              F+ +  K++VSW +L++G+A SG     L +F +M   G+E+N ++F  AV A A+ 
Sbjct: 594 YAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANI 653

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             V  GK IH  + K G+ S   V N+++ +Y +   + D             I+WN++I
Sbjct: 654 ANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTIDD-------------ISWNSMI 700

Query: 288 AGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            GY + G   E L +F  MK     PN  TF  +++AC+           H G+V  G+ 
Sbjct: 701 TGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACS-----------HVGLVDEGIS 749

Query: 347 GNLALANA------------LIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAH 393
              +++ A            ++D+  + G +S +++   EM  + D + W +++     H
Sbjct: 750 YFRSMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVH 809



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/426 (23%), Positives = 197/426 (46%), Gaps = 48/426 (11%)

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           VF++M  ++   W  +   +          G+F+ ML + VE +   F++ +R C+    
Sbjct: 119 VFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVLRGCSGNAV 178

Query: 230 -VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
              F + IHA  I  GF S+  + N ++D+Y +   LS A + F+ +  +D ++W  +I+
Sbjct: 179 SFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMIS 238

Query: 289 GYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           G  ++G   E + +F ++              +++AC  +     G+Q+H  ++++G   
Sbjct: 239 GLSQNGYEEEAMLLFCQI--------------VLSACTKVEFFEFGKQLHGLVLKQGFSS 284

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
              + NAL+ +Y++ GN+S +++IF  MS RD V++ S++ G    G+   A+ LF +M 
Sbjct: 285 ETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMN 344

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
               +PD +   ++L+AC+  G +  G ++        +  +  + G ++DL  +   +K
Sbjct: 345 LDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIK 404

Query: 468 EAYELI----------KSMP---------FKPDESVWGPLLGACKEHRLPNLGKLAALRV 508
            A+E            KS             P++  +  +L  C      +LG+    +V
Sbjct: 405 TAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQV 464

Query: 509 LDLKPNMMGTYI--ILSNIYAAEGKWEEFAK-FRKIMRGMGSKKEVGMSWIEVRDKVCGF 565
           L         Y+  +L ++YA  GK +   K FR++      K+   +SW  +   + G+
Sbjct: 465 LK-TGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRL------KENDVVSWTAM---IAGY 514

Query: 566 IANDKM 571
             +DK 
Sbjct: 515 TQHDKF 520


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 198/563 (35%), Positives = 323/563 (57%), Gaps = 14/563 (2%)

Query: 45  PSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           P++ + N +I +Y  E     A  LFD++PE D+VS+  +I+ Y        A  +F  M
Sbjct: 72  PNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGM 131

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
               ++ + FTLS+V+ AC     +     +H +A+  G +  + V N+L+  Y      
Sbjct: 132 REMGLDMDGFTLSAVITAC--CDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNG-D 188

Query: 164 MDNARLVFNDMKW-KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
           +D+A+ VF  M   +++VSW ++I  Y     G   LG+F+EM+  G+ ++ ++ +  + 
Sbjct: 189 LDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLT 248

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC---LSDANQYFDEMTEKD 279
           A      +S G   H  +IK GF  N  V + ++D+Y +  C   +SD  + F+E+TE D
Sbjct: 249 AFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSK--CGGGMSDCRKVFEEITEPD 306

Query: 280 LITWNTIIAGYEKSGS--SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
           L+ WNT+++GY ++     + L  F +M+   + PN  +F  +I+AC+ L++ S G+Q+H
Sbjct: 307 LVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIH 366

Query: 338 AGIVRRGLDGN-LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHG 396
           +  ++  +  N +++ NALI MY+KCGN+ D++++F  M++ + V+  SM+ GY  HG  
Sbjct: 367 SLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIE 426

Query: 397 KEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGC 455
            E++ LF  M++  + P  I F++VL+AC+H G V+EG  YF  M + +N+ P  E Y C
Sbjct: 427 MESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSC 486

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM 515
           ++DLLGRAG++ EA  LI  MPF P    W  LLGAC+ H    L   AA +VL L+P+ 
Sbjct: 487 MIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSN 546

Query: 516 MGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHT 575
              Y++LSN+YA+ G+WEE A  RK MR  G KK+ G SWIEV+ ++  F+A D      
Sbjct: 547 AAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMI 606

Query: 576 QYVYGVLEMLIRHMNETAYEPDI 598
           + +Y  LE +   M    Y PD+
Sbjct: 607 KEIYEFLEEMSGKMKRAGYVPDV 629



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 109/406 (26%), Positives = 190/406 (46%), Gaps = 37/406 (9%)

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC---- 161
           N+++        +LK C   + LS    +H + IK  +  S Y  N  + +Y+ C     
Sbjct: 2   NQISWTLQRFRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAW 61

Query: 162 -------ISMDN-------------------ARLVFNDMKWKNDVSWTTLITGYAHSGNG 195
                  IS  N                   A  +F+ +   + VS+ TLI+ YA  G  
Sbjct: 62  ARKAFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGET 121

Query: 196 YGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSI 255
              LG+F  M   G++M+ ++ S  + AC     V     +H+  +  GF S + V N++
Sbjct: 122 APALGLFSGMREMGLDMDGFTLSAVITACCDD--VGLIGQLHSVAVSSGFDSYVSVNNAL 179

Query: 256 LDMYCRFDCLSDANQYFDEMTE-KDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPN 313
           L  Y +   L DA + F  M   +D ++WN++I  Y +    S+ L +F +M     + +
Sbjct: 180 LTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVD 239

Query: 314 CFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC-GNISDSQKIF 372
            FT  S++ A   L  LS G Q H  +++ G   N  + + LID+Y+KC G +SD +K+F
Sbjct: 240 MFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVF 299

Query: 373 SEMSDRDLVTWTSMMIGYGAHGHGKE-AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLV 431
            E+++ DLV W +M+ GY  +    E A+E F +M   G RP+   F+ V++ACS+    
Sbjct: 300 EEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSP 359

Query: 432 DEGLKYFKSMNDYNVNPNK-EIYGCVVDLLGRAGRVKEAYELIKSM 476
            +G +        ++  N+  +   ++ +  + G +++A  L   M
Sbjct: 360 SQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRM 405



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 143/310 (46%), Gaps = 43/310 (13%)

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
           F   ++ C +   +S GK +H+  IK     +    N  + +Y +   L+ A + F +++
Sbjct: 11  FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70

Query: 277 EKDLITWNTIIAGYEK--------------------------SGSSEC------LNMFSK 304
           + ++ ++N IIA Y K                          S  ++C      L +FS 
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSG 130

Query: 305 MKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGN 364
           M+      + FT +++I AC     L    Q+H+  V  G D  +++ NAL+  Y K G+
Sbjct: 131 MREMGLDMDGFTLSAVITACCDDVGLI--GQLHSVAVSSGFDSYVSVNNALLTYYGKNGD 188

Query: 365 ISDSQKIFSEMSD-RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLT 423
           + D++++F  M   RD V+W SM++ YG H  G +A+ LF EMV+ G+  D     +VLT
Sbjct: 189 LDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLT 248

Query: 424 ACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG----RVKEAYELIKSMPFK 479
           A +    +  GL++   +     + N  +   ++DL  + G      ++ +E I     +
Sbjct: 249 AFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEIT----E 304

Query: 480 PDESVWGPLL 489
           PD  +W  ++
Sbjct: 305 PDLVLWNTMV 314



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 3/96 (3%)

Query: 27  QSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAG 86
           + +   +++SD   IP     +   LI  Y   G +++AR LFD M E + VS   MIAG
Sbjct: 363 KQIHSLALKSD---IPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAG 419

Query: 87  YTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKAC 122
           Y       ++  +F  M+  ++ P + T  SVL AC
Sbjct: 420 YAQHGIEMESLHLFQWMLERQIAPTSITFISVLSAC 455



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 70/160 (43%), Gaps = 20/160 (12%)

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           D N+   NA+I  YAK      + ++F ++ + DLV++ +++  Y   G    A+ LF  
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSG 130

Query: 406 MVKSGVRPDRIVFMAVLTACS---------HAGLVDEGLKYFKSMNDYNVNPNKEIYGCV 456
           M + G+  D     AV+TAC          H+  V  G   + S+N+            +
Sbjct: 131 MREMGLDMDGFTLSAVITACCDDVGLIGQLHSVAVSSGFDSYVSVNN-----------AL 179

Query: 457 VDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR 496
           +   G+ G + +A  +   M    DE  W  ++ A  +H+
Sbjct: 180 LTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQ 219


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 192/564 (34%), Positives = 320/564 (56%), Gaps = 4/564 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A + I  Y   G +  AR +F +M E D++SW  +I+G         +  +F++++R+ 
Sbjct: 334 VANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSG 393

Query: 108 VNPNAFTLSSVLKACKGMK-SLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           + P+ FT++SVL+AC  ++ S      VH  A+K G+    +V  +L+DVY+     M+ 
Sbjct: 394 LLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGG-KMEE 452

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A L+F++    +  SW  ++ G+  S N    L +F  M   G + +  +F+ A +A   
Sbjct: 453 AELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGC 512

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  GK IHA VIK  F  +L V++ ILDMY +   +  A + F+++   D + W T+
Sbjct: 513 LVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTV 572

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+G  ++G  E  L  + +M+     P+ +TF +++ AC+ L AL  G+Q+HA I++   
Sbjct: 573 ISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNC 632

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             +  +  +L+DMYAKCGNI D+  +F  M+ R +  W +M++G   HG+ +EA+  F+E
Sbjct: 633 AFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNE 692

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAG 464
           M   GV PDR+ F+ VL+ACSH+GL  +  K F SM   Y V P  E Y C+VD L RAG
Sbjct: 693 MKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAG 752

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
            ++EA +++ SMPF+   +++  LL AC+       G+  A ++  + P+    Y++LSN
Sbjct: 753 HIQEAEKVVSSMPFEASATMYRTLLNACRVQGDKETGERVAEKLFTMDPSDSAAYVLLSN 812

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           IYAA  +WE     R +M+ +  KKE G SWI++++KV  F+A D+    T  +Y  +E 
Sbjct: 813 IYAAANQWENAVSARNMMKRVNVKKEPGFSWIDMKNKVHLFVAGDRSHEETDLIYNKVEY 872

Query: 585 LIRHMNETAYEPDIDCLIHDLEGE 608
           +++ + E  Y PD +  + D+E E
Sbjct: 873 VMKRIKEEGYVPDTEFALVDIEEE 896



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 122/452 (26%), Positives = 218/452 (48%), Gaps = 33/452 (7%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            +A  L+  Y     I EAR LFD MP RDVV W VM+  Y      ++   +F    R+
Sbjct: 158 FVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRS 217

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + P+  ++ ++L    G K++    L    A                  YAT     D+
Sbjct: 218 GLRPDCVSVRTILMGV-GKKTVFERELEQVRA------------------YATKLFVCDD 258

Query: 167 ARLVFNDMKWKNDVS-WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
                      +DV+ W   ++ Y  +G G+  +  F++M+   V  +  ++ + +   A
Sbjct: 259 ----------DSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVA 308

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           S   +  GK IH AV++ G+   + V NS ++MY +   ++ A + F +M E DLI+WNT
Sbjct: 309 SLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNT 368

Query: 286 IIAGYEKSGSSEC-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSC-GQQVHAGIVRR 343
           +I+G  +SG  EC L +F  +      P+ FT TS++ AC++L    C G+QVH   ++ 
Sbjct: 369 VISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKA 428

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G+  +  ++ ALID+Y+K G + +++ +F      DL +W +MM G+    + +EA+ LF
Sbjct: 429 GIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLF 488

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
             M + G + D+I F     A      + +G +    +     + +  +   ++D+  + 
Sbjct: 489 SLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKC 548

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           G +K A ++   +P  PD+  W  ++  C E+
Sbjct: 549 GEMKSARKVFNQIP-SPDDVAWTTVISGCVEN 579



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 97/332 (29%), Positives = 171/332 (51%), Gaps = 3/332 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S ++T LI  Y   G +EEA  LF      D+ SW  M+ G+T  + + +A  +F  M  
Sbjct: 434 SFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHE 493

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
                +  T ++  KA   +  L     +H + IK      ++V + ++D+Y  C   M 
Sbjct: 494 RGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCG-EMK 552

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +AR VFN +   +DV+WTT+I+G   +G     L  + +M L GV+ + Y+F+  V+AC+
Sbjct: 553 SARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACS 612

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               +  GK IHA ++K     +  VM S++DMY +   + DA   F  M  + +  WN 
Sbjct: 613 LLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNA 672

Query: 286 IIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR- 343
           +I G  + G++ E LN F++MKS   +P+  TF  +++AC+     S   +    + +  
Sbjct: 673 MIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTY 732

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEM 375
           G++  +   + L+D  ++ G+I +++K+ S M
Sbjct: 733 GVEPEIEHYSCLVDALSRAGHIQEAEKVVSSM 764



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/388 (26%), Positives = 194/388 (50%), Gaps = 37/388 (9%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPE--RDVVSWTVMIAGYT-SFNCHN-----QAWTV 99
           +  NLI  Y   G +  AR LFD  P+  RD+V++  ++A Y  +   H+     +A+ +
Sbjct: 50  VTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHI 109

Query: 100 FVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
           F  + ++ +     TLS + K C    S S +  + G A+K GL+  ++V  +L+++YA 
Sbjct: 110 FRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAK 169

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
               +  AR++F+ M  ++ V W  ++  Y   G G   LG+F      G+  +     +
Sbjct: 170 -FQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPD----CV 224

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
           +VR    T  +  GK       K  F   L  + +             A + F    + D
Sbjct: 225 SVR----TILMGVGK-------KTVFERELEQVRAY------------ATKLFVCDDDSD 261

Query: 280 LITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           +  WN  ++ Y ++G   E ++ F  M   R   +  T+  I++  A+L  L  G+Q+H 
Sbjct: 262 VTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHG 321

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
            +VR G D  +++AN+ I+MY K G+++ ++++F +M + DL++W +++ G    G  + 
Sbjct: 322 AVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEEC 381

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACS 426
           ++ LF ++++SG+ PD+    +VL ACS
Sbjct: 382 SLRLFIDLLRSGLLPDQFTITSVLRACS 409



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 107/221 (48%), Gaps = 14/221 (6%)

Query: 214 PYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFD 273
           P  FSI   A A +  +  GK  HA ++  G   +  V N+++ MY +   L  A + FD
Sbjct: 14  PQWFSILRHAIADSDLI-LGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFD 72

Query: 274 --EMTEKDLITWNTIIAGYEKSG-------SSECLNMFSKMKSERFSPNCFTFTSIIAAC 324
               +++DL+T+N I+A Y  +G       + E  ++F  ++         T + +   C
Sbjct: 73  ITPQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLC 132

Query: 325 ATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWT 384
               + S  + +    V+ GL  ++ +A AL+++YAK   I +++ +F  M  RD+V W 
Sbjct: 133 LLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWN 192

Query: 385 SMMIGYGAHGHGKEAIELFDEMVKSGVRPD----RIVFMAV 421
            MM  Y   G G E + LF    +SG+RPD    R + M V
Sbjct: 193 VMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTILMGV 233



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 81/386 (20%), Positives = 166/386 (43%), Gaps = 40/386 (10%)

Query: 117 SVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW 176
           S+L+       L      H + +  GL    YV N+L+ +YA C  S+ +AR +F D+  
Sbjct: 18  SILRHAIADSDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCG-SLFSARKLF-DITP 75

Query: 177 KND---VSWTTLITGYAHSG------NGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           ++D   V++  ++  YAH+G        +    +F+ +    +    ++ S   + C   
Sbjct: 76  QSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLY 135

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
           G  S  + +    +K G   ++ V  +++++Y +F  + +A   FD M  +D++ WN ++
Sbjct: 136 GSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMM 195

Query: 288 AGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
             Y + G+  E L +FS        P+C +  +I+        +  G++    +  R L+
Sbjct: 196 KAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTIL--------MGVGKKT---VFERELE 244

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
              A A                 K+F    D D+  W   +  Y   G G EA++ F +M
Sbjct: 245 QVRAYAT----------------KLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDM 288

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
           +KS V  D + ++ +L+  +    ++ G +   ++  +  +    +    +++  +AG V
Sbjct: 289 IKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSV 348

Query: 467 KEAYELIKSMPFKPDESVWGPLLGAC 492
             A  +   M  + D   W  ++  C
Sbjct: 349 NYARRMFGQMK-EVDLISWNTVISGC 373


>gi|90399180|emb|CAJ86042.1| H0723C07.12 [Oryza sativa Indica Group]
          Length = 886

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 217/621 (34%), Positives = 335/621 (53%), Gaps = 16/621 (2%)

Query: 1   MRTKRLLSYAATFHCHKIPPIIKQSLQ-SVKKSSIQSDPPLIPKG---PSILATNLIKSY 56
           +R   LL +        I  +++ S + S  +  +Q    L+  G    ++L  NLI  Y
Sbjct: 186 LRAIDLLGFLPMERRRMIADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMY 245

Query: 57  FDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLS 116
              G +  A  +FD MPER+VVSWT ++ G+       +   +F EM  +  +PN FTLS
Sbjct: 246 AKCGKLHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLS 305

Query: 117 SVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW 176
           + LKAC G         +HG+ ++ G EG   V NSL+ +Y+    + D AR VF+ +  
Sbjct: 306 ATLKACGG--GTRAGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGD-ARRVFDVIPS 362

Query: 177 KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEM-NPYSFSIAVRACASTGWVSFGKL 235
           +N  +W ++I+GYAH+G G   L VF+EM     E  + ++F+  ++AC+  G    G  
Sbjct: 363 RNLATWNSMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQ 422

Query: 236 IHAAVIKHGF--GSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
           +HAA+   G    SN  +  ++LD+Y +   L  A Q FD +  ++ I W T+I G+ + 
Sbjct: 423 VHAAMAVRGVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQE 482

Query: 294 GS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
           G   E + +F +  S     +    +S++A  A  A +  G+QVH    +     ++++A
Sbjct: 483 GQVKEAMCLFRRFWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVA 542

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
           N+L+DMY KCG   ++ + F EM  R++V+WT+M+ G G HGHG+EAI+LF+EM   GV 
Sbjct: 543 NSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVE 602

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471
            D + ++A+L+ACSH+GLVDE  +YF  +  D  + P  E Y C+VDLLGRAG ++EA E
Sbjct: 603 ADEVAYLALLSACSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKE 662

Query: 472 LIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK 531
           LI SMP +P   VW  LL AC+ H+   +G+     +L +  +    Y++LSNI A  G+
Sbjct: 663 LILSMPMEPTVGVWQTLLSACRVHKDVAVGREVGDVLLAVDGDNPVNYVMLSNILAEAGE 722

Query: 532 WEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQ---YVYGVLEMLIRH 588
           W E    R  MR  G +K+ G SW EV DK   F       +H Q       + E+  R 
Sbjct: 723 WRECQGIRGAMRRKGLRKQGGCSWTEV-DKEVHFFYGGGDDAHPQAGDIRRALREVEARM 781

Query: 589 MNETAYEPDIDCLIHDLEGET 609
                Y  D  C +HD++ E+
Sbjct: 782 RERLGYSGDARCALHDVDEES 802


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 201/589 (34%), Positives = 327/589 (55%), Gaps = 12/589 (2%)

Query: 27  QSVKKSSIQSDPPLIPKG---PSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVM 83
           +S+ +  +Q    ++  G    + +   LI  Y    ++ +A  +FD M  RD V+W +M
Sbjct: 218 ESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIM 277

Query: 84  IAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGL 143
           I GY +   + + + +F  M    V  +     + LK C   + L+    +H   +K G 
Sbjct: 278 IGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGY 337

Query: 144 EGSIYVENSLMDVYATCCISMDNARLVFNDMKW-KNDVSWTTLITGYAHSGNGYGGLGVF 202
           E +  +  +LM  Y+ C  S+D A  +F+      N V+WT +I G+  + N    + +F
Sbjct: 338 EFAQDIRTALMVTYSKCS-SVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLF 396

Query: 203 KEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRF 262
            +M  EGV  N +++S  +    S    S    +HA +IK  +     V  ++LD Y + 
Sbjct: 397 CQMSREGVRPNHFTYSTVLAGKPS----SLLSQLHAQIIKAYYEKVPSVATALLDAYVKT 452

Query: 263 DCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSII 321
             + ++ + F  +  KD++ W+ ++ G  ++  SE  + +F ++  E   PN +TF+S+I
Sbjct: 453 GNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVI 512

Query: 322 AACATLAA-LSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDL 380
            AC++ AA +  G+Q+HA  V+ G    L +++AL+ MY+K GNI  ++K+F+   +RD+
Sbjct: 513 NACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDI 572

Query: 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS 440
           V+W SM+ GYG HG  K+A+E+F  M   G+  D + F+ VLTAC+HAGLV+EG KYF  
Sbjct: 573 VSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNI 632

Query: 441 M-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN 499
           M  DY+++   E Y C+VDL  RAG   +A ++I  MPF    ++W  LL AC+ HR   
Sbjct: 633 MIKDYHIDKKIEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLE 692

Query: 500 LGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVR 559
           LGKLAA +++ L+PN    Y++LSNI+A  G WEE A  RK+M     KKE G SWIE++
Sbjct: 693 LGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIK 752

Query: 560 DKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           +++  F+A D     +  VY  LE L   + +  Y+PD + + HD+E E
Sbjct: 753 NRIFSFLAGDVSHPFSDLVYAKLEELSIKLKDMGYQPDTNYVFHDVEEE 801



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 126/455 (27%), Positives = 237/455 (52%), Gaps = 17/455 (3%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + T+L+  Y      E+ R +FDEM  ++VVSWT +++GY     +++   +  +M    
Sbjct: 141 VGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEG 200

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           VNPN FT ++VL A      +     VH M +K G E + +V N+L+ +Y    +  D A
Sbjct: 201 VNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGD-A 259

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             VF+ M  ++ V+W  +I GYA  G    G  +F  M L GV+++   F  A++ C+  
Sbjct: 260 EAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQ 319

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLITWNTI 286
             ++F K +H  V+K+G+     +  +++  Y +   + +A + F       +++TW  +
Sbjct: 320 RELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAM 379

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I G+ ++ ++E  +++F +M  E   PN FT+++++A   +    S   Q+HA I++   
Sbjct: 380 IGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAGKPS----SLLSQLHAQIIKAYY 435

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           +   ++A AL+D Y K GN+ +S ++F  +  +D+V W++M+ G       ++A+E+F +
Sbjct: 436 EKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQ 495

Query: 406 MVKSGVRPDRIVFMAVLTAC-SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCV----VDLL 460
           +VK GV+P+   F +V+ AC S A  V+ G    K ++   V   K    CV    + + 
Sbjct: 496 LVKEGVKPNEYTFSSVINACSSSAATVEHG----KQIHATAVKSGKSNALCVSSALLTMY 551

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            + G ++ A E + +   + D   W  ++    +H
Sbjct: 552 SKKGNIESA-EKVFTRQEERDIVSWNSMITGYGQH 585



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/435 (28%), Positives = 223/435 (51%), Gaps = 10/435 (2%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           A  LFDE P +D+  +  ++  ++  N   +A  +F ++  + +  +  TLS  LK C  
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTT 184
           +        VH  ++K G    + V  SL+D+Y       ++ R +F++M  KN VSWT+
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKT-EDFEDGRGIFDEMGIKNVVSWTS 175

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG 244
           L++GYA +G     + +  +M +EGV  N ++F+  + A A    +  G  +HA ++K+G
Sbjct: 176 LLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNG 235

Query: 245 FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFS 303
           F     V N+++ MY + + + DA   FD M  +D +TWN +I GY   G   E   MF 
Sbjct: 236 FEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFH 295

Query: 304 KMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG 363
           +M+      +   F + +  C+    L+  +Q+H G+V+ G +    +  AL+  Y+KC 
Sbjct: 296 RMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCS 355

Query: 364 NISDSQKIFSEMSD--RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAV 421
           ++ ++ K+FS M+D   ++VTWT+M+ G+  + + ++A++LF +M + GVRP+   +  V
Sbjct: 356 SVDEAFKLFS-MADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTV 414

Query: 422 LTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481
           L     + L     +  K+   Y   P+  +   ++D   + G V E+  +  S+P K D
Sbjct: 415 LAGKPSSLLSQLHAQIIKAY--YEKVPS--VATALLDAYVKTGNVVESARVFYSIPAK-D 469

Query: 482 ESVWGPLLGACKEHR 496
              W  +L    + R
Sbjct: 470 IVAWSAMLTGLAQTR 484


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 195/561 (34%), Positives = 319/561 (56%), Gaps = 5/561 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+  Y +   +E AR +FD+M ERDVVSW+ MI   +     + A  +  EM   +V P+
Sbjct: 135 LMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPS 194

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENS--LMDVYATCCISMDNARL 169
              + S++       ++     +H   I+      + V  +  L+D+YA C   +  AR 
Sbjct: 195 EVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCG-HLGLARQ 253

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           +FN +  K  VSWT +I G   S     G  +F  M  E +  N  +    +  C  TG 
Sbjct: 254 LFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGA 313

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           +  GK +HA ++++GF  +L +  +++DMY +   + +A   FD    +D++ W  +++ 
Sbjct: 314 LQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSA 373

Query: 290 YEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           Y ++    +  N+F +M++    P   T  S+++ CA   AL  G+ VH+ I +  ++ +
Sbjct: 374 YAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVD 433

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
             L  AL+DMYAKCG+I+ + ++F E   RD+  W +++ G+  HG+G+EA+++F EM +
Sbjct: 434 CILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMER 493

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVK 467
            GV+P+ I F+ +L ACSHAGLV EG K F+ M + + + P  E YGC+VDLLGRAG + 
Sbjct: 494 QGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLD 553

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527
           EA+E+IKSMP KP+  VWG L+ AC+ H+ P LG+LAA ++L+++P   G  +++SNIYA
Sbjct: 554 EAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYA 613

Query: 528 AEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIR 587
           A  +W + A  RK M+ +G KKE G S IEV   V  F+  D+     + +  +L  + R
Sbjct: 614 AANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRR 673

Query: 588 HMNETAYEPDIDCLIHDLEGE 608
            +NE  Y PD   ++ +++ E
Sbjct: 674 KLNEAGYVPDTSTVLLNIDEE 694



 Score =  205 bits (521), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 135/440 (30%), Positives = 222/440 (50%), Gaps = 9/440 (2%)

Query: 113 FTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFN 172
           F   SVLKAC  +        +HG  +K+GL+  ++V N+LM +Y  C   ++ ARLVF+
Sbjct: 95  FMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECA-CVEYARLVFD 153

Query: 173 DMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSF 232
            M  ++ VSW+T+I   + +      L + +EM    V  +  +    V   A T  +  
Sbjct: 154 KMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRM 213

Query: 233 GKLIHAAVIKHGFGSNL--PVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
           GK +HA VI++    ++  P   ++LDMY +   L  A Q F+ +T+K +++W  +IAG 
Sbjct: 214 GKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGC 273

Query: 291 EKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
            +S    E   +F +M+ E   PN  T  S+I  C    AL  G+Q+HA I+R G   +L
Sbjct: 274 IRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSL 333

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
           ALA AL+DMY KC +I +++ +F    +RD++ WT+M+  Y       +A  LFD+M  S
Sbjct: 334 ALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTS 393

Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
           GVRP ++  +++L+ C+ AG +D G      ++   V  +  +   +VD+  + G +  A
Sbjct: 394 GVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAA 453

Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNMMGTYIILSNIYA 527
             L        D  +W  ++     H      L   A +    +KPN + T+I L +  +
Sbjct: 454 GRLFIE-AISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDI-TFIGLLHACS 511

Query: 528 AEGKWEEFAK-FRKIMRGMG 546
             G   E  K F K++   G
Sbjct: 512 HAGLVTEGKKLFEKMVHTFG 531



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 168/347 (48%), Gaps = 4/347 (1%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T L+  Y   G +  AR LF+ + ++ VVSWT MIAG    N   +   +F+ M    + 
Sbjct: 236 TALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIF 295

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           PN  T+ S++  C    +L     +H   ++ G   S+ +  +L+D+Y  C   + NAR 
Sbjct: 296 PNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCS-DIRNARA 354

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           +F+  + ++ + WT +++ YA +        +F +M   GV     +    +  CA  G 
Sbjct: 355 LFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGA 414

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           +  GK +H+ + K     +  +  +++DMY +   ++ A + F E   +D+  WN II G
Sbjct: 415 LDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITG 474

Query: 290 YEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-GLDG 347
           +   G   E L++F++M+ +   PN  TF  ++ AC+    ++ G+++   +V   GL  
Sbjct: 475 FAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVP 534

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAH 393
            +     ++D+  + G + ++ ++   M  + + + W +++     H
Sbjct: 535 QIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLH 581



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 121/245 (49%), Gaps = 5/245 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           LAT L+  Y     I  AR LFD    RDV+ WT M++ Y   NC +QA+ +F +M  + 
Sbjct: 335 LATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSG 394

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V P   T+ S+L  C    +L     VH    KE +E    +  +L+D+YA C   ++ A
Sbjct: 395 VRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCG-DINAA 453

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             +F +   ++   W  +ITG+A  G G   L +F EM  +GV+ N  +F   + AC+  
Sbjct: 454 GRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHA 513

Query: 228 GWVSFGKLIHAAVIKHGFG--SNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLITWN 284
           G V+ GK +   ++ H FG    +     ++D+  R   L +A++    M  K + I W 
Sbjct: 514 GLVTEGKKLFEKMV-HTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWG 572

Query: 285 TIIAG 289
            ++A 
Sbjct: 573 ALVAA 577



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 58/144 (40%), Gaps = 3/144 (2%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           IL T L+  Y   G I  A  LF E   RD+  W  +I G+       +A  +F EM R 
Sbjct: 435 ILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQ 494

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNA-ALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
            V PN  T   +L AC     ++    L   M    GL   I     ++D+     + +D
Sbjct: 495 GVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGL-LD 553

Query: 166 NARLVFNDMKWK-NDVSWTTLITG 188
            A  +   M  K N + W  L+  
Sbjct: 554 EAHEMIKSMPIKPNTIVWGALVAA 577


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 204/549 (37%), Positives = 320/549 (58%), Gaps = 20/549 (3%)

Query: 79  SWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMA 138
           +W+ +I  YTS +  + +++ F  M    V PN     S+LKA   +K    A  +H   
Sbjct: 77  AWSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACT 136

Query: 139 IKEGLEGSIYVENSLMDVYATCCIS--------------MDNARLVFNDMKWKNDVSWTT 184
           ++ GL+  +Y+ N+L++ YA    +              +D  + VF+ M  ++ VSW T
Sbjct: 137 VRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNT 196

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA--VRACASTGWVSFGKLIHAAVIK 242
           +I G+A +G     L + +EM   G ++ P SF+++  +   A    V+ GK IH   ++
Sbjct: 197 VIAGFAQNGMYVEALDMVREMGKNG-KLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVR 255

Query: 243 HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNM 301
           +GF  ++ + +S++DMY + + L  + + F  +  KD I+WN+IIAG  ++G     L  
Sbjct: 256 NGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGF 315

Query: 302 FSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK 361
           F +M  E   P   +F+S+I ACA L ALS G+Q+H  IVR G D N  +A++L+DMYAK
Sbjct: 316 FRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAK 375

Query: 362 CGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAV 421
           CGNI  ++ +F  +  RD+V WT++++G   HGH  +A+ LF+ M++ GVRP  + FMAV
Sbjct: 376 CGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAV 435

Query: 422 LTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMP-FK 479
           LTACSHAGLVDEG +YF SM  D+ + P  E Y  V DLLGRAGR++EAY+ I +M   +
Sbjct: 436 LTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNMRGVQ 495

Query: 480 PDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFR 539
           P  SVW  LL AC+ H+   L +    ++L +    MG Y+++SNIY+A  +W++ A+ R
Sbjct: 496 PTGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKDAARLR 555

Query: 540 KIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDID 599
             MR  G KK    SWIEV ++V  F+A DK   +   +   L++L+  M +  Y  D +
Sbjct: 556 IHMRKKGLKKTPACSWIEVGNQVHTFMAGDKSHPYYDKINKALDVLLEQMEKEGYVIDTN 615

Query: 600 CLIHDLEGE 608
            ++HD++ E
Sbjct: 616 QVLHDVDEE 624



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 122/257 (47%), Gaps = 4/257 (1%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   + ++LI  Y     +E +   F  +P +D +SW  +IAG       ++    F  M
Sbjct: 260 GDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRM 319

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           ++  V P A + SSV+ AC  + +LS    +HG  ++ G + + ++ +SL+D+YA C  +
Sbjct: 320 LKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCG-N 378

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +  AR VF+ +  ++ V+WT +I G A  G+    + +F+ ML +GV     +F   + A
Sbjct: 379 IKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTA 438

Query: 224 CASTGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM--TEKDL 280
           C+  G V  G +  ++     G    L    ++ D+  R   L +A  +   M   +   
Sbjct: 439 CSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNMRGVQPTG 498

Query: 281 ITWNTIIAGYEKSGSSE 297
             W+ ++A      S E
Sbjct: 499 SVWSILLAACRAHKSVE 515


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 207/565 (36%), Positives = 317/565 (56%), Gaps = 36/565 (6%)

Query: 45  PSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
           PS+    L++ Y   G    AR +FDE+ +++VV + VMI  Y + + +  A  V+  M 
Sbjct: 54  PSV-GIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMY 112

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
                P+ +T   VLKA     SL     +HG  +K GL+ ++YV N L+ +Y  C  S+
Sbjct: 113 TQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKC-KSL 171

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
             A+ V +++  ++ VSW ++++ YA +G     L + +EM  E + + P   ++A    
Sbjct: 172 KEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREM--EALNLKPNDCTMASLLP 229

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           A T   S                               D +    + F ++T+K +I+WN
Sbjct: 230 AVTNTTS-------------------------------DNVLYVKEMFLKLTKKSVISWN 258

Query: 285 TIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +IA Y   S   E + ++S+M++    P+  +  S++ A   L+ALS G++VH    R+
Sbjct: 259 VMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVHKFAERK 318

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
            L  NL L NALIDMYAKCG + D++ +F++M  RD+V+WTS++  YG  G G++A+ +F
Sbjct: 319 KLLPNLLLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQGRDAVAVF 378

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
            EM  SG+ PD I F++VL ACSHAGL+D+G  YF  M +  + P  E + CVVDLLGRA
Sbjct: 379 AEMRNSGLNPDSIAFVSVLAACSHAGLLDDGRYYFNLMAECGITPKLEHFACVVDLLGRA 438

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G++ EAY  I+ MP +PDE VWGPLL AC+ +   N+G LAA ++L L P   G Y++LS
Sbjct: 439 GKIDEAYGFIRQMPLEPDERVWGPLLSACRVYSNMNIGILAADKLLMLNPEHSGYYVLLS 498

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           NIYA  G+W + A  R IM   G KK  G+S +E+ D V  F+A D     ++ +Y  L+
Sbjct: 499 NIYAKAGRWADVAAIRSIMERKGIKKLPGISNVELNDGVHTFLAGDHSHPQSKKIYEELD 558

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGE 608
           +L+  M E  Y P+ D  +HD+E E
Sbjct: 559 VLVGKMKELGYMPETDSALHDVEEE 583


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 198/552 (35%), Positives = 318/552 (57%), Gaps = 8/552 (1%)

Query: 58  DEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSS 117
           D G +  AR +F+++P     +   +I GYT+ N   QA   +  M+   ++P+ FT  S
Sbjct: 86  DSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPS 145

Query: 118 VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNARLVFNDMKW 176
           + K+C     L     +H  + K G     Y++N+LM++Y+ C C+   +AR VF+ M  
Sbjct: 146 LFKSCG---VLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLV--SARKVFDKMVN 200

Query: 177 KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLI 236
           K+ VSW T+I  YA     +  + +F+ M +  V+ N  +    + ACA +  +   K +
Sbjct: 201 KSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQV 260

Query: 237 HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGS 295
           H  + + G G +  + ++++D+YC+  C   A   F++M EK+L  WN +I G+ E S  
Sbjct: 261 HKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDY 320

Query: 296 SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
            E L++F++M+      +  T  S++ AC  L AL  G+ +H  I +  ++ ++AL  AL
Sbjct: 321 EEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTAL 380

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           +DMYAKCG+I  + ++F EM ++D++TWT++++G    G G +A+ELF EM  S V+PD 
Sbjct: 381 VDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDA 440

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
           I F+ VL ACSHAGLV+EG+ YF SM N Y + P+ E YGC+VD+LGRAGR+ EA +LI+
Sbjct: 441 ITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQ 500

Query: 475 SMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEE 534
           +MP  PD  V   LL AC+ H    + + AA ++++L P   GTY++LSNIY++   WE 
Sbjct: 501 NMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEA 560

Query: 535 FAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAY 594
             K R++M     KK  G S IEV   V  F+  D     +  +Y  L+ ++R +    Y
Sbjct: 561 AKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGY 620

Query: 595 EPDIDCLIHDLE 606
            PD   ++ D++
Sbjct: 621 VPDKSEVLFDMD 632



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/387 (29%), Positives = 181/387 (46%), Gaps = 38/387 (9%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +   L+  Y + G +  AR +FD+M  + VVSW  MI  Y  ++  ++A  +F  M    
Sbjct: 174 IQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIAS 233

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDN 166
           V PN  TL +VL AC   + L  A  VH    + G+     + ++LMDVY  C C  +  
Sbjct: 234 VKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPL-- 291

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR +FN M  KN   W  +I G+    +    L +F EM L GV+ +  + +  + AC  
Sbjct: 292 ARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTH 351

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G +  GK +H  + K     ++ +  +++DMY +   +  A + F EM EKD++TW  +
Sbjct: 352 LGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTAL 411

Query: 287 IAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I G    G   + L +F +M+     P+  TF  ++AAC+           HAG+V  G 
Sbjct: 412 IVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACS-----------HAGLVNEG- 459

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
              +A  N++ + Y     I  S + +  M D         M+G    G   EA +L   
Sbjct: 460 ---IAYFNSMPNKYG----IQPSIEHYGCMVD---------MLGRA--GRIAEAEDLIQN 501

Query: 406 MVKSGVRPDRIVFMAVLTACS-HAGLV 431
           M    + PD  V + +L+AC  H  LV
Sbjct: 502 M---PMAPDYFVLVGLLSACRIHGNLV 525



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 122/231 (52%), Gaps = 2/231 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           ++L + L+  Y   G    AR LF++MPE+++  W +MI G+   + + +A ++F EM  
Sbjct: 273 TVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQL 332

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           + V  +  T++S+L AC  + +L     +H    KE +E  + +  +L+D+YA C  S++
Sbjct: 333 SGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCG-SIE 391

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +A  VF +M  K+ ++WT LI G A  G G   L +F EM +  V+ +  +F   + AC+
Sbjct: 392 SAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACS 451

Query: 226 STGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM 275
             G V+ G    ++   K+G   ++     ++DM  R   +++A      M
Sbjct: 452 HAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNM 502


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 198/563 (35%), Positives = 323/563 (57%), Gaps = 14/563 (2%)

Query: 45  PSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           P++ + N +I +Y  E     A  LFD++PE D+VS+  +I+ Y        A  +F  M
Sbjct: 72  PNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGM 131

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
               ++ + FTLS+V+ AC     +     +H +A+  G +  + V N+L+  Y      
Sbjct: 132 REMGLDMDXFTLSAVITAC--CDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNG-D 188

Query: 164 MDNARLVFNDMKW-KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
           +D+A+ VF  M   +++VSW ++I  Y     G   LG+F+EM+  G+ ++ ++ +  + 
Sbjct: 189 LDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLT 248

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC---LSDANQYFDEMTEKD 279
           A      +S G   H  +IK GF  N  V + ++D+Y +  C   +SD  + F+E+TE D
Sbjct: 249 AFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSK--CGGGMSDCRKVFEEITEPD 306

Query: 280 LITWNTIIAGYEKSGS--SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
           L+ WNT+++GY ++     + L  F +M+   + PN  +F  +I+AC+ L++ S G+Q+H
Sbjct: 307 LVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIH 366

Query: 338 AGIVRRGLDGN-LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHG 396
           +  ++  +  N +++ NALI MY+KCGN+ D++++F  M++ + V+  SM+ GY  HG  
Sbjct: 367 SLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIE 426

Query: 397 KEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGC 455
            E++ LF  M++  + P  I F++VL+AC+H G V+EG  YF  M + +N+ P  E Y C
Sbjct: 427 MESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSC 486

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM 515
           ++DLLGRAG++ EA  LI  MPF P    W  LLGAC+ H    L   AA +VL L+P+ 
Sbjct: 487 MIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSN 546

Query: 516 MGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHT 575
              Y++LSN+YA+ G+WEE A  RK MR  G KK+ G SWIEV+ ++  F+A D      
Sbjct: 547 AAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMI 606

Query: 576 QYVYGVLEMLIRHMNETAYEPDI 598
           + +Y  LE +   M    Y PD+
Sbjct: 607 KEIYEFLEEMSGKMKRAGYVPDV 629



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 109/406 (26%), Positives = 190/406 (46%), Gaps = 37/406 (9%)

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC---- 161
           N+++        +LK C   + LS    +H + IK  +  S Y  N  + +Y+ C     
Sbjct: 2   NQISWTLQRFRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAW 61

Query: 162 -------ISMDN-------------------ARLVFNDMKWKNDVSWTTLITGYAHSGNG 195
                  IS  N                   A  +F+ +   + VS+ TLI+ YA  G  
Sbjct: 62  ARKAFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGET 121

Query: 196 YGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSI 255
              LG+F  M   G++M+ ++ S  + AC     V     +H+  +  GF S + V N++
Sbjct: 122 APALGLFSGMREMGLDMDXFTLSAVITACCDD--VGLIGQLHSVAVSSGFDSYVSVNNAL 179

Query: 256 LDMYCRFDCLSDANQYFDEMTE-KDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPN 313
           L  Y +   L DA + F  M   +D ++WN++I  Y +    S+ L +F +M     + +
Sbjct: 180 LTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVD 239

Query: 314 CFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC-GNISDSQKIF 372
            FT  S++ A   L  LS G Q H  +++ G   N  + + LID+Y+KC G +SD +K+F
Sbjct: 240 MFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVF 299

Query: 373 SEMSDRDLVTWTSMMIGYGAHGHGKE-AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLV 431
            E+++ DLV W +M+ GY  +    E A+E F +M   G RP+   F+ V++ACS+    
Sbjct: 300 EEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSP 359

Query: 432 DEGLKYFKSMNDYNVNPNK-EIYGCVVDLLGRAGRVKEAYELIKSM 476
            +G +        ++  N+  +   ++ +  + G +++A  L   M
Sbjct: 360 SQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRM 405



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 143/310 (46%), Gaps = 43/310 (13%)

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
           F   ++ C +   +S GK +H+  IK     +    N  + +Y +   L+ A + F +++
Sbjct: 11  FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70

Query: 277 EKDLITWNTIIAGYEK--------------------------SGSSEC------LNMFSK 304
           + ++ ++N IIA Y K                          S  ++C      L +FS 
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSG 130

Query: 305 MKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGN 364
           M+      + FT +++I AC     L    Q+H+  V  G D  +++ NAL+  Y K G+
Sbjct: 131 MREMGLDMDXFTLSAVITACCDDVGLI--GQLHSVAVSSGFDSYVSVNNALLTYYGKNGD 188

Query: 365 ISDSQKIFSEMSD-RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLT 423
           + D++++F  M   RD V+W SM++ YG H  G +A+ LF EMV+ G+  D     +VLT
Sbjct: 189 LDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLT 248

Query: 424 ACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG----RVKEAYELIKSMPFK 479
           A +    +  GL++   +     + N  +   ++DL  + G      ++ +E I     +
Sbjct: 249 AFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEIT----E 304

Query: 480 PDESVWGPLL 489
           PD  +W  ++
Sbjct: 305 PDLVLWNTMV 314



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 3/96 (3%)

Query: 27  QSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAG 86
           + +   +++SD   IP     +   LI  Y   G +++AR LFD M E + VS   MIAG
Sbjct: 363 KQIHSLALKSD---IPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAG 419

Query: 87  YTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKAC 122
           Y       ++  +F  M+  ++ P + T  SVL AC
Sbjct: 420 YAQHGIEMESLHLFQWMLERQIAPTSITFISVLSAC 455


>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 998

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 195/553 (35%), Positives = 308/553 (55%), Gaps = 2/553 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +    I  YF    ++  R LFD M +++VVSWT +IAG    + H  A  +FVEM R  
Sbjct: 279 MVNGFIDFYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMG 338

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
            NP+AF  +SVL +C  + +L     VH  AIK  ++   +V+N L+D+YA C  S+ +A
Sbjct: 339 WNPDAFGCTSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKC-DSLTDA 397

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R VFN M   + VS+  +I GY+        L +F+EM L         F   +   AS 
Sbjct: 398 RKVFNLMAAIDLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASL 457

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +     IH  +IK+G   +    ++++D+Y +   + DA   F+E+ +KD++ W  + 
Sbjct: 458 YHLELSNQIHGLIIKYGVSLDEFAGSALIDVYSKCSRVGDARLVFEEIQDKDIVVWTAMF 517

Query: 288 AGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           +GY ++S + E L ++  ++  R  PN FTF ++I A + +A+L  GQQ H  +++ G D
Sbjct: 518 SGYTQQSENEESLKLYKCLQMSRLKPNEFTFAAVITAASNIASLRHGQQFHNQVIKMGFD 577

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            +  +AN L+DMYAK G+I ++ K F   + +D   W SM+  Y  HG  ++A+++F++M
Sbjct: 578 DDPFVANTLVDMYAKSGSIEEAHKAFISTNWKDTACWNSMIATYAQHGEAEKALQVFEDM 637

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
           +  G++P+ + F+ VL+ACSH GL+D G  +F SM+ + + P  E Y C+V LLGRAG++
Sbjct: 638 IMEGLKPNYVTFVGVLSACSHTGLLDLGFDHFDSMSQFGIEPGIEHYVCMVSLLGRAGKL 697

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            EA E I+ MP K    VW  LL AC+      LG  AA   +   P   G+Y++LSNI+
Sbjct: 698 YEAKEFIEKMPIKQAAVVWRSLLSACRVSGNVELGTYAAEMAISCNPADSGSYVLLSNIF 757

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           A++G W    + R+ M   G  KE G SWIEV +++  FIA D     +  +  VL+ L+
Sbjct: 758 ASKGMWVNVRRLREKMDISGVVKEPGCSWIEVNNEIHKFIAKDTAHRDSAPISLVLDNLL 817

Query: 587 RHMNETAYEPDID 599
             +    Y  + D
Sbjct: 818 LQIKGFGYMANTD 830



 Score =  240 bits (613), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 151/518 (29%), Positives = 271/518 (52%), Gaps = 24/518 (4%)

Query: 17  KIPPIIKQSLQSVKKSSIQSDPPL--------------IPKGPSILATNLIKSYFDEGLI 62
           +IPPII+Q     + +++   P +                K    L   L+ +Y    L+
Sbjct: 31  RIPPIIEQRKIGRELANLLQSPHIPCCKKIHSKIVVFGFHKHDIFLVNTLLHAYSKLNLV 90

Query: 63  EEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR--NEVNPNAFTLSSVLK 120
             A  LFD M  +++V+W+ M++ YT  +   +A  +FV+ +R  NE  PN + L+SV++
Sbjct: 91  NHANKLFDTMSHKNLVTWSSMVSMYTHHSHCLEALMLFVQFMRSCNE-KPNEYILASVVR 149

Query: 121 ACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT-CCISMDNARLVFNDMKWKND 179
           AC     L+ A  +HG+ +K G    +YV  SL+D Y    CI  D+ARL+F+ ++ K  
Sbjct: 150 ACTQFGGLNPALQIHGLVVKGGYVQDVYVCTSLIDFYTKHACI--DDARLLFDGLQVKTS 207

Query: 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAA 239
            +WTT+I GY+  G     L +F +M    V  + Y  S  + AC    ++  GK IH  
Sbjct: 208 FTWTTIIAGYSKQGRSQVSLKLFDQMKEGHVCPDKYVLSSVLSACLMLKFLEGGKQIHCY 267

Query: 240 VIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG-YEKSGSSEC 298
           V++ G   ++ ++N  +D Y +   +    + FD M +K++++W T+IAG  + S   + 
Sbjct: 268 VLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDA 327

Query: 299 LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDM 358
           L++F +M    ++P+ F  TS++ +C +L AL  G+QVHA  ++  +D +  + N LIDM
Sbjct: 328 LDLFVEMARMGWNPDAFGCTSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKNGLIDM 387

Query: 359 YAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVF 418
           YAKC +++D++K+F+ M+  DLV++ +M+ GY       EA++LF EM  S   P  ++F
Sbjct: 388 YAKCDSLTDARKVFNLMAAIDLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIF 447

Query: 419 MAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPF 478
           +++L   +    ++   +    +  Y V+ ++     ++D+  +  RV +A  + + +  
Sbjct: 448 VSLLGVSASLYHLELSNQIHGLIIKYGVSLDEFAGSALIDVYSKCSRVGDARLVFEEIQD 507

Query: 479 KPDESVWGPLLGACKEH--RLPNLGKLAALRVLDLKPN 514
           K D  VW  +     +      +L     L++  LKPN
Sbjct: 508 K-DIVVWTAMFSGYTQQSENEESLKLYKCLQMSRLKPN 544



 Score =  236 bits (601), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 139/483 (28%), Positives = 246/483 (50%), Gaps = 13/483 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + T+LI  Y     I++AR LFD +  +   +WT +IAGY+       +  +F +M    
Sbjct: 178 VCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGH 237

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V P+ + LSSVL AC  +K L     +H   ++ G+   + + N  +D Y  C   +   
Sbjct: 238 VCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCH-KVQLG 296

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R +F+ M  KN VSWTT+I G   +      L +F EM   G   + +  +  + +C S 
Sbjct: 297 RKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSL 356

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  G+ +HA  IK    ++  V N ++DMY + D L+DA + F+ M   DL+++N +I
Sbjct: 357 VALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAAIDLVSYNAMI 416

Query: 288 AGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            GY +     E L++F +M+    SP    F S++   A+L  L    Q+H  I++ G+ 
Sbjct: 417 EGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLYHLELSNQIHGLIIKYGVS 476

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            +    +ALID+Y+KC  + D++ +F E+ D+D+V WT+M  GY      +E+++L+  +
Sbjct: 477 LDEFAGSALIDVYSKCSRVGDARLVFEEIQDKDIVVWTAMFSGYTQQSENEESLKLYKCL 536

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
             S ++P+   F AV+TA S+   +  G ++   +     + +  +   +VD+  ++G +
Sbjct: 537 QMSRLKPNEFTFAAVITAASNIASLRHGQQFHNQVIKMGFDDDPFVANTLVDMYAKSGSI 596

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD------LKPNMMGTYI 520
           +EA++   S  +K D + W  ++    +H         AL+V +      LKPN +    
Sbjct: 597 EEAHKAFISTNWK-DTACWNSMIATYAQHGEAE----KALQVFEDMIMEGLKPNYVTFVG 651

Query: 521 ILS 523
           +LS
Sbjct: 652 VLS 654


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 190/510 (37%), Positives = 297/510 (58%), Gaps = 15/510 (2%)

Query: 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT-------------C 160
           +L   LK+C  +   +  A +H +A++ G     +  N+L+++Y                
Sbjct: 60  SLPGALKSCAALGLRALGASLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGS 119

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
            + +++ R VF++M  K+ VSW TL+ G A SG     LG+ +EM  +G + + ++ S  
Sbjct: 120 AVVLESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSV 179

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           +   A    V  G  +H    ++GF  ++ V +S++DMY        + + FD +  +D 
Sbjct: 180 LPIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDA 239

Query: 281 ITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           I WN+++AG  ++GS  E L +F +M      P   TF+S+I AC  LA+L  G+Q+HA 
Sbjct: 240 ILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAY 299

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
           ++R G DGN+ ++++LIDMY KCGN+S +++IF  +   D+V+WT+M++G+  HG  +EA
Sbjct: 300 VIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREA 359

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVD 458
           + LFD M    ++P+ I F+AVLTACSHAGLVD+G KYF SM+D Y + P+ E +  + D
Sbjct: 360 LVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALAD 419

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518
            LGR G+++EAY  I  M  KP  SVW  LL ACK H+   L +  A ++ DL+P  MG+
Sbjct: 420 TLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEPRSMGS 479

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
           +IILSN Y++ G+W E A  RK MR  G +KE   SWIEV++K   F+A+DK     + +
Sbjct: 480 HIILSNTYSSSGRWNEAAHLRKSMRKKGMQKEPACSWIEVKNKQHVFVAHDKSHPWYERI 539

Query: 579 YGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
              L +    M    Y P+ D +  D+E E
Sbjct: 540 IDALNVFSEQMVRQGYVPNTDDVFQDIEEE 569



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 179/341 (52%), Gaps = 14/341 (4%)

Query: 61  LIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLK 120
           ++E  R +FDEMPE+DVVSW  ++ G      H +A  +  EM R+   P++FTLSSVL 
Sbjct: 122 VLESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLP 181

Query: 121 ACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDV 180
                  +     +HG A + G    ++V +SL+D+YA  C   D +  VF+++  ++ +
Sbjct: 182 IFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYAN-CTRTDYSVKVFDNLPVRDAI 240

Query: 181 SWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAV 240
            W +++ G A +G+    LG+F+ ML  G++  P +FS  + AC +   +  GK +HA V
Sbjct: 241 LWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYV 300

Query: 241 IKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECL 299
           I+ GF  N+ + +S++DMYC+   +S A + FD +   D+++W  +I G+   G + E L
Sbjct: 301 IRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREAL 360

Query: 300 NMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQV------HAGIVRRGLDGNLALAN 353
            +F +M+     PN  TF +++ AC+    +  G +       H GIV      +L    
Sbjct: 361 VLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIV-----PSLEHHA 415

Query: 354 ALIDMYAKCGNISDSQKIFSEMSDRDLVT-WTSMMIGYGAH 393
           AL D   + G + ++    S M  +   + W++++     H
Sbjct: 416 ALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVH 456



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 121/243 (49%), Gaps = 3/243 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + ++LI  Y +    + +  +FD +P RD + W  M+AG       ++A  +F  M+ +
Sbjct: 209 FVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEALGLFRRMLHS 268

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + P   T SS++ AC  + SL     +H   I+ G +G++++ +SL+D+Y  C  ++  
Sbjct: 269 GIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCG-NVSI 327

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR +F+ ++  + VSWT +I G+A  G     L +F  M L  ++ N  +F   + AC+ 
Sbjct: 328 ARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLTACSH 387

Query: 227 TGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT-WN 284
            G V  G K  ++    +G   +L    ++ D   R   L +A  +   M  K   + W+
Sbjct: 388 AGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWS 447

Query: 285 TII 287
           T++
Sbjct: 448 TLL 450



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 15/151 (9%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   ++++LI  Y   G +  AR +FD +   D+VSWT MI G+       +A  +F  M
Sbjct: 307 GNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRM 366

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALV-------HGMAIKEGLEGSIYVENSLMDV 156
               + PN  T  +VL AC      S+A LV       + M+   G+  S+    +L D 
Sbjct: 367 ELGNLKPNHITFLAVLTAC------SHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADT 420

Query: 157 YATCCISMDNARLVFNDMKWKNDVS-WTTLI 186
                  ++ A    + MK K   S W+TL+
Sbjct: 421 LGRPG-KLEEAYNFISGMKIKPTASVWSTLL 450


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 181/495 (36%), Positives = 296/495 (59%), Gaps = 3/495 (0%)

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG-LEGSIYVENSLMDVYATCCIS 163
           R  + P+    S +LK C  +  +    +VH   +    L+  + ++N ++++YA C   
Sbjct: 80  RGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGC- 138

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +D+AR +F++M  K+ V+WT LI G++ +      L +F +ML  G + N ++ S  ++A
Sbjct: 139 LDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKA 198

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
             S   +  G  +HA  +K+G+ S++ V ++++DMY R   +  A   FD M  K  ++W
Sbjct: 199 SGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSW 258

Query: 284 NTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N +I+G+ + G  E  L++  KM+ + F P  FT++S+++ACA++ AL  G+ VHA +++
Sbjct: 259 NALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIK 318

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            GL     + N L+DMYAK G+I D++++F  +   D+V+W +M+ G   HG GKE ++ 
Sbjct: 319 SGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDR 378

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           F++M++ G+ P+ I F+ VLTACSH+GL+DEGL YF+ M  Y V P+   Y   VDLLGR
Sbjct: 379 FEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGR 438

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
            G +  A   I+ MP +P  +VWG LLGAC+ H+   LG  AA R  +L P+  G  ++L
Sbjct: 439 VGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLL 498

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           SNIYA+ G+W + AK RK+M+  G KK+   SW+E+ + V  F+AND+     + + G  
Sbjct: 499 SNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPRIKEIRGKW 558

Query: 583 EMLIRHMNETAYEPD 597
           E +   + E  Y PD
Sbjct: 559 EEISGKIKEIGYVPD 573



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 105/330 (31%), Positives = 180/330 (54%), Gaps = 2/330 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +L   ++  Y   G +++AR +FDEMP +D+V+WT +IAG++  N    A  +F +M+R 
Sbjct: 124 VLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRL 183

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
              PN FTLSS+LKA      L     +H   +K G + S+YV ++L+D+YA C   MD 
Sbjct: 184 GFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCG-HMDA 242

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A+L F+ M  K++VSW  LI+G+A  G G   L +  +M  +  +   +++S  + ACAS
Sbjct: 243 AQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACAS 302

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G +  GK +HA +IK G      + N++LDMY +   + DA + FD + + D+++WNT+
Sbjct: 303 IGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTM 362

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           + G  + G   E L+ F +M      PN  +F  ++ AC+    L  G      + +  +
Sbjct: 363 LTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKV 422

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEM 375
           + ++      +D+  + G +  +++   EM
Sbjct: 423 EPDVPHYVTFVDLLGRVGLLDRAERFIREM 452



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + +   L+  Y   G I++A+ +FD + + DVVSW  M+ G        +    F +M+R
Sbjct: 325 AFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLR 384

Query: 106 NEVNPNAFTLSSVLKAC 122
             + PN  +   VL AC
Sbjct: 385 IGIEPNEISFLCVLTAC 401


>gi|449523774|ref|XP_004168898.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14850-like [Cucumis sativus]
          Length = 606

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 194/554 (35%), Positives = 313/554 (56%), Gaps = 8/554 (1%)

Query: 45  PSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
           P+ L  +L+  Y     +  A+ + +  P R VV+WT +IAG     C   A   F +M+
Sbjct: 41  PAFLYNHLVNMYAKLDHLNSAKLILELAPCRSVVTWTALIAGSVQNGCFVSALLHFSDML 100

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
            + V PN FT   VLKA  G++  +    +H +A+KEGL   ++V  S+ D+Y+     +
Sbjct: 101 SDCVRPNDFTFPCVLKASTGLRMDTTGKQLHALAVKEGLINDVFVGCSVFDMYSKLGF-L 159

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           ++A  VF++M  +N  +W   I+     G     +  F E+L  G + +  +F   + AC
Sbjct: 160 NDAYKVFDEMPHRNLETWNAYISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCXFLNAC 219

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           +    +  G  +H  +I+ G+G N+ V N ++D Y +   +  +   FD M E++ ++W+
Sbjct: 220 SDKLGLGPGCQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSWS 279

Query: 285 TIIAGYEKSGSSE---CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           ++IA Y ++   E   CL  F + + E   P  F  +S++ ACA L+ +  G+ V A  V
Sbjct: 280 SLIAAYVQNNEEEKASCL--FLRARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAV 337

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           +  ++ N+ +A+AL+DMY KCG+I ++++ F+ M +R+LV+W +++ GY   GH  +A+ 
Sbjct: 338 KACVEQNIFVASALVDMYGKCGSIDNAEQAFNAMPERNLVSWNALLGGYAHQGHANKAVA 397

Query: 402 LFDEMVKS-GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDL 459
           L +EM  + G+ P  +  +  L+ACS AG +  G+K F+SM + Y V P  E Y C+VDL
Sbjct: 398 LLEEMTSAAGIVPSYVSLICALSACSRAGDLKTGMKIFESMKERYGVEPGPEHYACLVDL 457

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
           LGRAG V+ AY+ IK MPF P  S+WG LLGAC+ H  P LGKLAA ++ +L P   G +
Sbjct: 458 LGRAGMVECAYDFIKRMPFPPTISIWGALLGACRMHGKPELGKLAAEKLFELDPKDSGNH 517

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVY 579
           ++LSN++AA G+WEE    R  M+ +G KK  G SWI V  ++  F A DK       + 
Sbjct: 518 VVLSNMFAATGRWEEVTVVRNEMKEVGIKKGAGFSWITVDSRIHMFQAKDKSHEKDPEIQ 577

Query: 580 GVLEMLIRHMNETA 593
            +L  L + M + A
Sbjct: 578 DILGKLRKEMQDAA 591


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 181/495 (36%), Positives = 296/495 (59%), Gaps = 3/495 (0%)

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG-LEGSIYVENSLMDVYATCCIS 163
           R  + P+    S +LK C  +  +    +VH   +    L+  + ++N ++++YA C   
Sbjct: 80  RGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGC- 138

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +D+AR +F++M  K+ V+WT LI G++ +      L +F +ML  G++ N ++ S  ++A
Sbjct: 139 LDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKA 198

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
             S   +  G  +HA  +K+G+ S++ V ++++DMY R   +  A   FD M  K  ++W
Sbjct: 199 SGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSW 258

Query: 284 NTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N +I+G+ + G  E  L++  KM+ + F P  FT++S+ +ACA++ AL  G+ VHA +++
Sbjct: 259 NALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIK 318

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            GL     + N L+DMYAK G+I D++++F  +   D+V+W +M+ G   HG GKE ++ 
Sbjct: 319 SGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDR 378

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           F++M++ G+ P+ I F+ VLTACSH+GL+DEGL YF+ M  Y V P+   Y   VDLLGR
Sbjct: 379 FEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGR 438

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
            G +  A   I+ MP +P  +VWG LLGAC+ H+   LG  AA R  +L P+  G  ++L
Sbjct: 439 VGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLL 498

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           SNIYA+ G+W + AK RK+M+  G KK+   SW+E+ + V  F+AND+     + + G  
Sbjct: 499 SNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPQIKEIRGKW 558

Query: 583 EMLIRHMNETAYEPD 597
           E +   + E  Y PD
Sbjct: 559 EEISGKIKEIGYVPD 573



 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 105/330 (31%), Positives = 180/330 (54%), Gaps = 2/330 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +L   ++  Y   G +++AR +FDEMP +D+V+WT +IAG++  N    A  +F +M+R 
Sbjct: 124 VLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRL 183

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + PN FTLSS+LKA      L     +H   +K G + S+YV ++L+D+YA C   MD 
Sbjct: 184 GLQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCG-HMDA 242

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A+L F+ M  K++VSW  LI+G+A  G G   L +  +M  +  +   +++S    ACAS
Sbjct: 243 AQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACAS 302

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G +  GK +HA +IK G      + N++LDMY +   + DA + FD + + D+++WNT+
Sbjct: 303 IGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTM 362

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           + G  + G   E L+ F +M      PN  +F  ++ AC+    L  G      + +  +
Sbjct: 363 LTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKV 422

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEM 375
           + ++      +D+  + G +  +++   EM
Sbjct: 423 EPDVPHYVTFVDLLGRVGLLDRAERFIREM 452



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + +   L+  Y   G I++A+ +FD + + DVVSW  M+ G        +    F +M+R
Sbjct: 325 AFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLR 384

Query: 106 NEVNPNAFTLSSVLKAC 122
             + PN  +   VL AC
Sbjct: 385 IGIEPNEISFLCVLTAC 401


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 206/622 (33%), Positives = 345/622 (55%), Gaps = 42/622 (6%)

Query: 22  IKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWT 81
           +KQ+   + ++   SDP    K   + A   + S+     +E AR +FDE+P+ +  +W 
Sbjct: 46  LKQTHGHMIRTGTFSDPYSASK---LFAMAALSSF---ASLEYARKVFDEIPKPNSFAWN 99

Query: 82  VMIAGYTSFNCHNQAWTVFVEMV-RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIK 140
            +I  Y S      +   F++MV  ++  PN +T   ++KA   + SLS    +HGMA+K
Sbjct: 100 TLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVK 159

Query: 141 EGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLG 200
             +   ++V NSL+  Y +C   +D+A  VF  +K K+ VSW ++I G+   G+    L 
Sbjct: 160 SAVGSDVFVANSLIHCYFSCG-DLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALE 218

Query: 201 VFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYC 260
           +FK+M  E V+ +  +    + ACA    + FG+ + + + ++    NL + N++LDMY 
Sbjct: 219 LFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYT 278

Query: 261 RFDCLSDANQYFDEMTEKD-------------------------------LITWNTIIAG 289
           +   + DA + FD M EKD                               ++ WN +I+ 
Sbjct: 279 KCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISA 338

Query: 290 YEKSGS-SECLNMFSKMKSER-FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           YE++G  +E L +F +++ ++    N  T  S ++ACA + AL  G+ +H+ I + G+  
Sbjct: 339 YEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRM 398

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           N  + +ALI MY+KCG++  S+++F+ +  RD+  W++M+ G   HG G EA+++F +M 
Sbjct: 399 NFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQ 458

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRV 466
           ++ V+P+ + F  V  ACSH GLVDE    F  M ++Y + P ++ Y C+VD+LGR+G +
Sbjct: 459 EANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYL 518

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
           ++A + I++MP  P  SVWG LLGACK H   NL ++A  R+L+L+P   G +++LSNIY
Sbjct: 519 EKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIY 578

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           A  GKWE  ++ RK MR  G KKE G S IE+   +  F++ D     ++ VYG L  ++
Sbjct: 579 AKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVM 638

Query: 587 RHMNETAYEPDIDCLIHDLEGE 608
             +    YEP+I  ++  +E E
Sbjct: 639 EKLKSNGYEPEISQVLQIIEEE 660



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/469 (26%), Positives = 229/469 (48%), Gaps = 56/469 (11%)

Query: 106 NEVNPNAFTLS-------SVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA 158
           N  NPN  T +       S+++ C  ++ L      HG  I+ G     Y  + L  + A
Sbjct: 17  NFSNPNQPTTNNERSRHISLIERCVSLRQLKQ---THGHMIRTGTFSDPYSASKLFAMAA 73

Query: 159 TCCI-SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG-VEMNPYS 216
                S++ AR VF+++   N  +W TLI  YA   +    +  F +M+ E     N Y+
Sbjct: 74  LSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYT 133

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC--LSDANQYFDE 274
           F   ++A A    +S G+ +H   +K   GS++ V NS++  +C F C  L  A + F  
Sbjct: 134 FPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLI--HCYFSCGDLDSACKVFTT 191

Query: 275 MTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG 333
           + EKD+++WN++I G+ + GS +  L +F KM+SE    +  T   +++ACA +  L  G
Sbjct: 192 IKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFG 251

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG-- 391
           +QV + I    ++ NL LANA++DMY KCG+I D++++F  M ++D VTWT+M+ GY   
Sbjct: 252 RQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAIS 311

Query: 392 -----------------------------AHGHGKEAIELFDEM-VKSGVRPDRIVFMAV 421
                                         +G   EA+ +F E+ ++  ++ ++I  ++ 
Sbjct: 312 EDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVST 371

Query: 422 LTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481
           L+AC+  G ++ G      +  + +  N  +   ++ +  + G ++++ E+  S+  K D
Sbjct: 372 LSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVE-KRD 430

Query: 482 ESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNMMGTYIILSNIYAA 528
             VW  ++G    H   N  +     ++  ++KPN     +  +N++ A
Sbjct: 431 VFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNG----VTFTNVFCA 475


>gi|255544622|ref|XP_002513372.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547280|gb|EEF48775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 597

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 189/517 (36%), Positives = 306/517 (59%), Gaps = 4/517 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L+T LI  Y   G    AR +FD MPER+VVSWT  I+GY     +  A  VF +M R  
Sbjct: 74  LSTKLIIFYVKFGETINARKVFDRMPERNVVSWTAQISGYAKNGHYQDALLVFSQMGRAG 133

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V  N FT  SVL+AC G++ L     +HG   K    G+++V+++L+D+++ C  +M++A
Sbjct: 134 VRANQFTYGSVLRACTGLRCLERGMQIHGCIQKNRFIGNLFVQSALVDLHSKCG-NMEDA 192

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R +F  M  ++ VSW  +I GYA          +F  M+ EGV  + ++    ++A +  
Sbjct: 193 RYLFETMSERDVVSWNAVIGGYAAQDFNDDSFRMFYSMMGEGVTPDCFTLGSVLKASSRA 252

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +     IH  +I+ GFGS++ +  S++D Y + + +  A+  +  M +KD+I++  I+
Sbjct: 253 NNLIKVCQIHGIIIQLGFGSHIDLNGSLIDAYAKSEGMKSASALYKSMLKKDVISFTAIM 312

Query: 288 AGYEK--SGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
            GY +  S S E L++F  M+      +  TF +++  CA +A+LS G+Q+HA  ++   
Sbjct: 313 TGYARKCSYSREALDLFKDMQHIFMEIDDVTFCTMLNVCADIASLSIGRQIHALAIKYKP 372

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             ++A  NAL+DMYAK G I D+ + F EM ++++++WTS++ GYG HG+G EAI L+ +
Sbjct: 373 SYDVATGNALVDMYAKSGEIEDATRAFYEMKEKNVISWTSLITGYGKHGYGHEAIALYKK 432

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAG 464
           M   G++P+ I F+++L ACSH+GL  EG + F +M   YN+ P  E Y C++DL  R G
Sbjct: 433 MEYEGLKPNDITFLSLLFACSHSGLTGEGWECFNNMITKYNILPRAEHYSCMIDLFARGG 492

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           +++EAY +I  M  KP+ S+WG +LGAC  +   +LG++AA  +L + P     Y++L+ 
Sbjct: 493 QLEEAYNMICKMNIKPNSSLWGAILGACSIYGHMSLGEVAATHLLRMDPENSANYVVLAG 552

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDK 561
           IYAA G W++  + R +M     KK  G S I+  +K
Sbjct: 553 IYAASGSWDKACRMRNLMEYRSLKKIPGYSIIQSTNK 589



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 142/257 (55%), Gaps = 1/257 (0%)

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           ++ C  T  +  G LIH+ +I++GF SNL +   ++  Y +F    +A + FD M E+++
Sbjct: 44  LQLCIETEDLKQGCLIHSHIIRNGFDSNLHLSTKLIIFYVKFGETINARKVFDRMPERNV 103

Query: 281 ITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           ++W   I+GY K+G   + L +FS+M       N FT+ S++ AC  L  L  G Q+H  
Sbjct: 104 VSWTAQISGYAKNGHYQDALLVFSQMGRAGVRANQFTYGSVLRACTGLRCLERGMQIHGC 163

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
           I +    GNL + +AL+D+++KCGN+ D++ +F  MS+RD+V+W +++ GY A     ++
Sbjct: 164 IQKNRFIGNLFVQSALVDLHSKCGNMEDARYLFETMSERDVVSWNAVIGGYAAQDFNDDS 223

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL 459
             +F  M+  GV PD     +VL A S A  + +  +    +       + ++ G ++D 
Sbjct: 224 FRMFYSMMGEGVTPDCFTLGSVLKASSRANNLIKVCQIHGIIIQLGFGSHIDLNGSLIDA 283

Query: 460 LGRAGRVKEAYELIKSM 476
             ++  +K A  L KSM
Sbjct: 284 YAKSEGMKSASALYKSM 300



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 95/175 (54%), Gaps = 1/175 (0%)

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           +  I+  C     L  G  +H+ I+R G D NL L+  LI  Y K G   +++K+F  M 
Sbjct: 40  YMKILQLCIETEDLKQGCLIHSHIIRNGFDSNLHLSTKLIIFYVKFGETINARKVFDRMP 99

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
           +R++V+WT+ + GY  +GH ++A+ +F +M ++GVR ++  + +VL AC+    ++ G++
Sbjct: 100 ERNVVSWTAQISGYAKNGHYQDALLVFSQMGRAGVRANQFTYGSVLRACTGLRCLERGMQ 159

Query: 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
               +       N  +   +VDL  + G +++A  L ++M  + D   W  ++G 
Sbjct: 160 IHGCIQKNRFIGNLFVQSALVDLHSKCGNMEDARYLFETMS-ERDVVSWNAVIGG 213


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 199/578 (34%), Positives = 318/578 (55%), Gaps = 34/578 (5%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           A ++F  + E + +SW  MI G+   +    A  ++V M+   ++PN++T   + K+C  
Sbjct: 31  AISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAK 90

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI---------------------- 162
            K+      +H   +K GL   ++V  SL+ +YA   I                      
Sbjct: 91  SKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAM 150

Query: 163 --------SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP 214
                   +MD A+ +F+++  K+ VSW  +I+GYA  G     L +F EM+   V+ + 
Sbjct: 151 ITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDE 210

Query: 215 YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE 274
            + +  +  C  +G V  G+ IH+ +  HGFGSNL ++N+++D+Y +   +  A+  F+ 
Sbjct: 211 STMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEG 270

Query: 275 MTEKDLITWNTIIAGYEK-SGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG 333
           +  KD+I+WNT+I GY   +   E L +F +M     +PN  T  SI+ ACA L A+  G
Sbjct: 271 LQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIG 330

Query: 334 QQVHAGIVRR--GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG 391
           + +H  I ++  G+  N +L  +LIDMYAKCGNI  + ++F  + ++ L +  +M+ G+ 
Sbjct: 331 RWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFA 390

Query: 392 AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNK 450
            HG    A +L   M K G+ PD I F+ +L+ACSHAGL D G K FKSM  DY + P  
Sbjct: 391 MHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKL 450

Query: 451 EIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD 510
           E YGC++DLLGR+G  KEA ELI SM  +PD  +WG LL ACK H+   LG+L A +++ 
Sbjct: 451 EHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQKLMK 510

Query: 511 LKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDK 570
           ++P   G+Y++LSNIYA   +W++ A+ R ++   G KK  G S IE+   V  F+  DK
Sbjct: 511 IEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDSMVHEFLIGDK 570

Query: 571 MGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
                + +Y +LE +   + ET +  D   ++ ++E E
Sbjct: 571 FHPQNKEIYKMLEEIDSLLAETGFVSDTSEVLQEMEEE 608



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 120/459 (26%), Positives = 225/459 (49%), Gaps = 33/459 (7%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T +I  Y   G +++A+ +FDE+P +DVVSW  MI+GY     + +A  +F EM++ +V 
Sbjct: 148 TAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVK 207

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P+  T+++VL  C    ++     +H      G   ++ + N+L+D+Y+ C   M+ A  
Sbjct: 208 PDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCG-EMERAHG 266

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           +F  +++K+ +SW TLI GYA+  +    L VF+EML  G   N  +    + ACA  G 
Sbjct: 267 LFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGA 326

Query: 230 VSFGKLIHAAVIK--HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
           +  G+ IH  + K   G  +N  +  S++DMY +   +  ANQ FD +  K L + N +I
Sbjct: 327 IDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMI 386

Query: 288 AGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI-VRRGL 345
            G+   G ++   ++ S+MK +   P+  TF  +++AC+       G+++   + +   +
Sbjct: 387 FGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRI 446

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           +  L     +ID+  + G   +++++ + M+ + D V W S++     H + +    +  
Sbjct: 447 EPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQ 506

Query: 405 EMVKSGVR-PDRIVFMAVLTACS---------HAGLVDEGLKYFKSMNDYNVNP------ 448
           +++K   + P   V ++ + A S            L D+GLK     +   ++       
Sbjct: 507 KLMKIEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDSMVHEFL 566

Query: 449 --------NKEIYGCVVD---LLGRAGRVKEAYELIKSM 476
                   NKEIY  + +   LL   G V +  E+++ M
Sbjct: 567 IGDKFHPQNKEIYKMLEEIDSLLAETGFVSDTSEVLQEM 605



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 144/287 (50%), Gaps = 38/287 (13%)

Query: 241 IKHGFGSNLPVMNSILDMYC----RFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS 296
           IK G  +    ++ +LD +C     F  L  A   F  + E + ++WNT+I G+  S   
Sbjct: 1   IKIGLHNTNYALSKLLD-FCILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDP 59

Query: 297 -ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
              LN++  M S   SPN +TF  +  +CA   A   G+Q+HA I++ GL  +L +  +L
Sbjct: 60  ISALNLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSL 119

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHG------------------- 396
           I MYA+ G + D+ K+F   S RD+V++T+M+ GY + G+                    
Sbjct: 120 ISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWN 179

Query: 397 ------------KEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDY 444
                       KEA+ELF+EM+K  V+PD      VL+ C+H+G V+ G +    ++++
Sbjct: 180 AMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNH 239

Query: 445 NVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
               N ++   ++DL  + G ++ A+ L + + +K D   W  L+G 
Sbjct: 240 GFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYK-DVISWNTLIGG 285



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 135/285 (47%), Gaps = 9/285 (3%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L   LI  Y   G +E A  LF+ +  +DV+SW  +I GY   N H +A  VF EM++  
Sbjct: 247 LVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLG 306

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIY---VENSLMDVYATCCISM 164
             PN  T+ S+L AC  + ++     +H + I + L+G I    ++ SL+D+YA C  ++
Sbjct: 307 ETPNDVTMLSILPACAHLGAIDIGRWIH-VYIDKKLKGIITNTSLQTSLIDMYAKCG-NI 364

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           + A  VF+ +  K+  S   +I G+A  G       +   M  +G+E +  +F   + AC
Sbjct: 365 EAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSAC 424

Query: 225 ASTGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLIT 282
           +  G    G K+  +  + +     L     ++D+  R     +A +  + MT E D + 
Sbjct: 425 SHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVI 484

Query: 283 WNTIIAGYEKSGSSECLNMFSK--MKSERFSPNCFTFTSIIAACA 325
           W +++   +   + E   + ++  MK E  +P  +   S I A +
Sbjct: 485 WGSLLKACKIHKNLELGELIAQKLMKIEPKNPGSYVLLSNIYATS 529


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 203/565 (35%), Positives = 332/565 (58%), Gaps = 5/565 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            +A  LI  Y   G + EA  +F  M + D +SW  M++G+     +++A   + EM   
Sbjct: 354 FVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDA 413

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
              P+   + S++ A     +  N   +H  A+K GL+  + V NSL+D+YA  C SM  
Sbjct: 414 GQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFC-SMKY 472

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
              +F+ M  K+ VSWTT+I G+A +G+    L +F+E+ LEG++++    S  + AC+ 
Sbjct: 473 MDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSG 532

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +S  K IH+ +I+ G  S+L + N I+D+Y     +  A + F+ +  KD+++W ++
Sbjct: 533 LKLISSVKEIHSYIIRKGL-SDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSM 591

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+ Y  +G ++E L +F  MK     P+  +  SI++A A+L+AL  G+++H  ++R+G 
Sbjct: 592 ISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGF 651

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
               +LA+ L+DMYA+CG +  S+ +F+ + ++DLV WTSM+  YG HG G+ AI+LF  
Sbjct: 652 VLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRR 711

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAG 464
           M    + PD I F+AVL ACSH+GL++EG ++ +SM  +Y + P  E Y C+VDLLGRA 
Sbjct: 712 MEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRAN 771

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
            ++EAY+ +K M  +P   VW  LLGAC+ H    LG++AA ++L++ P   G Y+++SN
Sbjct: 772 HLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSN 831

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           +YAAE +W++  + R  M+  G KK  G SWIEV +KV  F+A DK    +  +Y  L  
Sbjct: 832 VYAAERRWKDVEEVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQ 891

Query: 585 LIRHM-NETAYEPDIDCLIHDLEGE 608
           +   +  E  Y      ++H+ + E
Sbjct: 892 ITEKLAKEGGYVAQTKFVLHNAKEE 916



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 144/458 (31%), Positives = 242/458 (52%), Gaps = 11/458 (2%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            L+T L+  Y   G + +A  LFD MP + + +W  MI  Y +      +  ++ EM  +
Sbjct: 151 FLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVS 210

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            +  +A T   +LKAC  +K     A VHG+AIKEG    ++V NS++ +Y T C  ++ 
Sbjct: 211 GIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMY-TKCNDLNG 269

Query: 167 ARLVFNDMKWKND-VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           AR +F+ M  K D VSW ++I+ Y+ +G     L +F EM    +  N Y+F  A++AC 
Sbjct: 270 ARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACE 329

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
            + ++  G  IHA V+K  +  N+ V N+++ MY RF  + +A   F  M + D I+WN+
Sbjct: 330 DSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNS 389

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +++G+ ++G   E L  + +M+     P+     SIIAA A       G Q+HA  ++ G
Sbjct: 390 MLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNG 449

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           LD +L + N+L+DMYAK  ++     IF +M D+D+V+WT+++ G+  +G    A+ELF 
Sbjct: 450 LDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFR 509

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE---IYGCVVDLLG 461
           E+   G+  D ++  ++L ACS   L+       K ++ Y +        +   +VD+ G
Sbjct: 510 EVQLEGIDLDVMMISSILLACSGLKLISS----VKEIHSYIIRKGLSDLVLQNGIVDVYG 565

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN 499
             G V  A  + + + FK D   W  ++     + L N
Sbjct: 566 ECGNVDYAARMFELIEFK-DVVSWTSMISCYVHNGLAN 602



 Score =  225 bits (573), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 155/535 (28%), Positives = 275/535 (51%), Gaps = 42/535 (7%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPER-DVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
            +A +++  Y     +  AR LFD MPE+ DVVSW  MI+ Y+S     +A  +F EM +
Sbjct: 252 FVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQK 311

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             + PN +T  + L+AC+    +     +H   +K     +++V N+L+ +YA      +
Sbjct: 312 ASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGE 371

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A + +N   W + +SW ++++G+  +G  +  L  + EM   G + +  +    + A A
Sbjct: 372 AANIFYNMDDW-DTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASA 430

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
            +G    G  IHA  +K+G  S+L V NS++DMY +F  +   +  FD+M +KD+++W T
Sbjct: 431 RSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTT 490

Query: 286 IIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           IIAG+ ++GS S  L +F +++ E    +    +SI+ AC+ L  +S  +++H+ I+R+G
Sbjct: 491 IIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKG 550

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           L  +L L N ++D+Y +CGN+  + ++F  +  +D+V+WTSM+  Y  +G   EA+ELF 
Sbjct: 551 L-SDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFH 609

Query: 405 EMVKSGVRPDRIVFMAVLTACS-----------HAGLVDEGL------------------ 435
            M ++GV PD I  +++L+A +           H  L+ +G                   
Sbjct: 610 LMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCG 669

Query: 436 KYFKSMNDYNVNPNKE--IYGCVVDLLGRAGRVKEAYELIKSM---PFKPDESVWGPLLG 490
              KS N +N   NK+  ++  +++  G  G  + A +L + M      PD   +  +L 
Sbjct: 670 TLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLY 729

Query: 491 ACKEHRLPNLGK--LAALRV-LDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIM 542
           AC    L N G+  L +++    L+P     Y+ L ++       EE  +F K M
Sbjct: 730 ACSHSGLMNEGRRFLESMKYEYQLEP-WPEHYVCLVDLLGRANHLEEAYQFVKGM 783



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 123/439 (28%), Positives = 226/439 (51%), Gaps = 14/439 (3%)

Query: 94  NQAWTVFVEMVRNEVNPNAFTL----SSVLKACKGMKSLSNAALVHG-MAIKEGLEGSIY 148
           N+A+    ++  N+ +P+ F+L    SSVL+ C   K+LS    VH  M     L  S++
Sbjct: 93  NEAFQSLTDLFANQ-SPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVF 151

Query: 149 VENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE 208
           +   L+ +Y  C   +D  +L F+ M  K   +W  +I  Y  +G   G L +++EM + 
Sbjct: 152 LSTRLVFMYGKCGCLVDAEKL-FDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVS 210

Query: 209 GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDA 268
           G+ ++  +F   ++AC        G  +H   IK G+ S + V NSI+ MY + + L+ A
Sbjct: 211 GIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGA 270

Query: 269 NQYFDEMTEK-DLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACAT 326
            Q FD M EK D+++WN++I+ Y  +G S E L +F +M+    +PN +TF + + AC  
Sbjct: 271 RQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACED 330

Query: 327 LAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSM 386
            + +  G  +HA +++     N+ +ANALI MYA+ G + ++  IF  M D D ++W SM
Sbjct: 331 SSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSM 390

Query: 387 MIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV 446
           + G+  +G   EA++ + EM  +G +PD +  ++++ A + +G    G++         +
Sbjct: 391 LSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGL 450

Query: 447 NPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH----RLPNLGK 502
           + + ++   +VD+  +   +K    +   MP K D   W  ++    ++    R   L +
Sbjct: 451 DSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDK-DVVSWTTIIAGHAQNGSHSRALELFR 509

Query: 503 LAALRVLDLKPNMMGTYII 521
              L  +DL   M+ + ++
Sbjct: 510 EVQLEGIDLDVMMISSILL 528



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 111/199 (55%), Gaps = 7/199 (3%)

Query: 40  LIPKGPS--ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAW 97
           +I KG S  +L   ++  Y + G ++ A  +F+ +  +DVVSWT MI+ Y      N+A 
Sbjct: 546 IIRKGLSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEAL 605

Query: 98  TVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG--LEGSIYVENSLMD 155
            +F  M    V P++ +L S+L A   + +L     +HG  I++G  LEGS+   ++L+D
Sbjct: 606 ELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSL--ASTLVD 663

Query: 156 VYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPY 215
           +YA C  +++ +R VFN ++ K+ V WT++I  Y   G G   + +F+ M  E +  +  
Sbjct: 664 MYARCG-TLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHI 722

Query: 216 SFSIAVRACASTGWVSFGK 234
           +F   + AC+ +G ++ G+
Sbjct: 723 AFVAVLYACSHSGLMNEGR 741


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 218/649 (33%), Positives = 336/649 (51%), Gaps = 81/649 (12%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPE--RDVVSWTVMIAGYTSFNCHNQAWT 98
           IPK   + AT ++ +Y   G I+ A  LF+  P   RD VS+  MI  ++  +  + A  
Sbjct: 57  IPKPDIVAATTMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQ 116

Query: 99  VFVEMVRNEVNPNAFTLSSVLKACKGM-KSLSNAALVHGMAIKEGLEGSIYVENSLMDVY 157
           +FV+M R    P+ FT SSVL A   +    ++   +H    K G      V N+LM  Y
Sbjct: 117 LFVQMKRLGFVPDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCY 176

Query: 158 ATC--------CISMDNARLVFNDMK--------W--------KND-------------- 179
            +C        C+ M  AR +F++          W        +ND              
Sbjct: 177 VSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTD 236

Query: 180 ---VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLI 236
              V+W  +I+GY H G       + + M   G++++ Y+++  + A ++ G  + G+ +
Sbjct: 237 HIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQV 296

Query: 237 HAAVIKHGFGSN----LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG--- 289
           HA V++     +    L V N+++ +Y R   L +A + FD+M  KDL++WN I++G   
Sbjct: 297 HAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVN 356

Query: 290 ---YEKSGS--------------------------SECLNMFSKMKSERFSPNCFTFTSI 320
               E++ S                           E L +F++MK E   P  + +   
Sbjct: 357 ARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGA 416

Query: 321 IAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDL 380
           IA+C+ L +L  GQQ+H+ I++ G D +L++ NALI MY++CG +  +  +F  M   D 
Sbjct: 417 IASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDS 476

Query: 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS 440
           V+W +M+     HGHG +AI+L+++M+K  + PDRI F+ +L+ACSHAGLV EG  YF +
Sbjct: 477 VSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDT 536

Query: 441 MND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN 499
           M   Y + P ++ Y  ++DLL RAG   EA  + +SMPF+P   +W  LL  C  H    
Sbjct: 537 MRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNME 596

Query: 500 LGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVR 559
           LG  AA R+L+L P   GTYI LSN+YAA G+W+E A+ RK+MR  G KKE G SWIEV 
Sbjct: 597 LGIQAADRLLELMPQQDGTYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGCSWIEVE 656

Query: 560 DKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           + V  F+ +D +      VY  LE L+  M +  Y PD   ++HD+E E
Sbjct: 657 NMVHVFLVDDAVHPEVHAVYRYLEQLVHEMRKLGYVPDTKFVLHDMESE 705



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/357 (22%), Positives = 143/357 (40%), Gaps = 84/357 (23%)

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
           R  A     SF + +HA ++  GF     ++N ++D YC+   +  A   FD++ + D++
Sbjct: 4   RYLAQLSHTSFARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIV 63

Query: 282 TWNTIIAGYEKSGS----------------------------------SECLNMFSKMKS 307
              T+++ Y  +G+                                     L +F +MK 
Sbjct: 64  AATTMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKR 123

Query: 308 ERFSPNCFTFTSIIAACATLA--ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGN- 364
             F P+ FTF+S++ A + +A     C QQ+H  + + G     ++ NAL+  Y  C + 
Sbjct: 124 LGFVPDPFTFSSVLGALSLIADEETHC-QQLHCEVFKWGALSVPSVLNALMSCYVSCASS 182

Query: 365 --------ISDSQKIFSE---------------------------------MSDRDLVTW 383
                   ++ ++K+F E                                 M+D   V W
Sbjct: 183 PLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAW 242

Query: 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND 443
            +M+ GY   G  +EA +L   M   G++ D   + +V++A S+AGL + G +    +  
Sbjct: 243 NAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLR 302

Query: 444 YNVNPNKE----IYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR 496
             V P+      +   ++ L  R G++ EA  +   MP K D   W  +L  C   R
Sbjct: 303 TVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVK-DLVSWNAILSGCVNAR 358


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 191/552 (34%), Positives = 319/552 (57%), Gaps = 12/552 (2%)

Query: 68   LFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKS 127
             +  + + +V SW  +IA         +A   F  + +  + P   +    +K+C  +  
Sbjct: 1098 FYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCD 1157

Query: 128  LSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLIT 187
            L +  + H  A   G E  ++V ++L+D+Y+ C   + +AR +F+++  +N VSWT++IT
Sbjct: 1158 LVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCG-QLKDARALFDEIPLRNVVSWTSMIT 1216

Query: 188  GYAHSGNGYGGLGVFKEMLLEGVEMN-----PYSFSIAVR---ACASTGWVSFGKLIHAA 239
            GY  +      L +FK+ L E  E+      P    + V    AC+        + +H  
Sbjct: 1217 GYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGF 1276

Query: 240  VIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSEC 298
            V+K GF  ++ V N+++D Y +      + + FD M EKD I+WN++IA Y +SG S E 
Sbjct: 1277 VVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEA 1336

Query: 299  LNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALID 357
            L +F  M +      N  T ++++ ACA   AL  G+ +H  +++  L+ N+ +  ++ID
Sbjct: 1337 LEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIID 1396

Query: 358  MYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIV 417
            MY KCG +  ++K F  M ++++ +WT+M+ GYG HG  KEA+++F +MV++GV+P+ I 
Sbjct: 1397 MYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYIT 1456

Query: 418  FMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
            F++VL ACSHAGLV+EG  +F +M + Y++ P  E YGC+VDL GRAG + EAY LIK M
Sbjct: 1457 FVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRM 1516

Query: 477  PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFA 536
              KPD  VWG LLGAC+ H+  +LG++AA ++ +L P+  G Y++LSN+YA  G+W +  
Sbjct: 1517 KMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVE 1576

Query: 537  KFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEP 596
            + R +M+     K  G S +E++ +V  F+  DK   H + +Y  LE L   + +  Y P
Sbjct: 1577 RMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVP 1636

Query: 597  DIDCLIHDLEGE 608
            ++  ++HD++ E
Sbjct: 1637 NMTSVLHDVDEE 1648



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 118/394 (29%), Positives = 200/394 (50%), Gaps = 41/394 (10%)

Query: 118 VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK 177
           +L+ CK  K L     +H   I+ GL     +   L+ +Y+T    +  A L+F  ++  
Sbjct: 33  LLQNCKNFKHLRQ---IHAKIIRSGLSNDQLLTRKLIHLYSTHG-RIAYAILLFYQIQNP 88

Query: 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIH 237
              +W  +I     +G     L ++K M+ +G+  + ++F   ++AC +   +  GK++H
Sbjct: 89  CTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVH 148

Query: 238 AAVIKHGFGSNLPVMNSILDMYCRFDC--------------------------------- 264
            ++IK+GF  ++ V N+++D Y  F C                                 
Sbjct: 149 GSLIKYGFSGDVFVQNNLIDFY--FKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGD 206

Query: 265 LSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAA 323
           L +A + FDE+  K++++W  +I GY ++    E L +F +M++E   PN +T  S+I A
Sbjct: 207 LQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKA 266

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTW 383
           C  +  L+ G+ +H   ++  ++  + L  ALIDMY+KCG+I D+ ++F  M  + L TW
Sbjct: 267 CTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTW 326

Query: 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND 443
            SM+   G HG G+EA+ LF EM +  V+PD I F+ VL AC H   V EG  YF  M  
Sbjct: 327 NSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQ 386

Query: 444 -YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
            Y + P  E Y C+ +L  R+  + EA++  K +
Sbjct: 387 HYGIAPIPEHYECMTELYARSNNLDEAFKSTKEV 420



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 121/363 (33%), Positives = 187/363 (51%), Gaps = 35/363 (9%)

Query: 48   LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR-- 105
            +++ LI  Y   G +++AR LFDE+P R+VVSWT MI GY      + A  +F + +   
Sbjct: 1179 VSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEE 1238

Query: 106  ------NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
                  N V  ++  + SVL AC  +        VHG  +K+G +GSI V N+LMD YA 
Sbjct: 1239 TEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAK 1298

Query: 160  CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFS 218
            C   + + + VF+ M+ K+D+SW ++I  YA SG     L VF  M+   GV  N  + S
Sbjct: 1299 CGQPLVSKK-VFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLS 1357

Query: 219  IAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK 278
              + ACA  G +  GK IH  VIK     N+ V  SI+DMYC+   +  A + FD M EK
Sbjct: 1358 AVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEK 1417

Query: 279  DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
            ++ +W  ++AGY   G + E L++F KM      PN  TF S++AAC+           H
Sbjct: 1418 NVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACS-----------H 1466

Query: 338  AGIVRRG------------LDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWT 384
            AG+V  G            ++  +     ++D++ + G ++++  +   M  + D V W 
Sbjct: 1467 AGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWG 1526

Query: 385  SMM 387
            S++
Sbjct: 1527 SLL 1529



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 160/361 (44%), Gaps = 32/361 (8%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +L   LI  Y   G I  A  LF ++      +W ++I   T      QA  ++  MV  
Sbjct: 60  LLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQ 119

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC------ 160
            +  + FT   V+KAC    S+    +VHG  IK G  G ++V+N+L+D Y  C      
Sbjct: 120 GIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFA 179

Query: 161 ------------------------CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGY 196
                                   C  +  AR +F+++  KN VSWT +I GY  +    
Sbjct: 180 LKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPE 239

Query: 197 GGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSIL 256
             L +FK M  E +  N Y+    ++AC   G ++ G+ IH   IK+     + +  +++
Sbjct: 240 EALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALI 299

Query: 257 DMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCF 315
           DMY +   + DA + F+ M  K L TWN++I      G   E LN+FS+M+     P+  
Sbjct: 300 DMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAI 359

Query: 316 TFTSIIAACATLAALSCGQQVHAGIVRR-GLDGNLALANALIDMYAKCGNISDSQKIFSE 374
           TF  ++ AC  +  +  G      + +  G+         + ++YA+  N+ ++ K   E
Sbjct: 360 TFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKE 419

Query: 375 M 375
           +
Sbjct: 420 V 420



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 155/325 (47%), Gaps = 44/325 (13%)

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
           + IHA +I+ G  ++  +   ++ +Y     ++ A   F ++      TWN II     +
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 294 GSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
           G SE  L ++  M  +  + + FTF  +I AC    ++  G+ VH  +++ G  G++ + 
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQ 163

Query: 353 NALIDMYAKCG-------------------------------NISDSQKIFSEMSDRDLV 381
           N LID Y KCG                               ++ ++++IF E+  +++V
Sbjct: 164 NNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVV 223

Query: 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441
           +WT+M+ GY  +   +EA+ELF  M    + P+    ++++ AC+  G++  G    + +
Sbjct: 224 SWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLG----RGI 279

Query: 442 NDYNVNPNKEI----YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
           +DY +    EI       ++D+  + G +K+A E+ ++MP K     W  ++ +   H L
Sbjct: 280 HDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRK-SLPTWNSMITSLGVHGL 338

Query: 498 PN--LGKLAALRVLDLKPNMMGTYI 520
               L   + +  +++KP+ + T+I
Sbjct: 339 GQEALNLFSEMERVNVKPDAI-TFI 362


>gi|449433319|ref|XP_004134445.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Cucumis sativus]
          Length = 606

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 194/554 (35%), Positives = 313/554 (56%), Gaps = 8/554 (1%)

Query: 45  PSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
           P+ L  +L+  Y     +  A+ + +  P R VV+WT +IAG     C   A   F +M+
Sbjct: 41  PAFLYNHLVNMYAKLDHLNSAKLILELAPCRSVVTWTALIAGSVQNGCFVSALLHFSDML 100

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
            + V PN FT   VLKA  G++  +    +H +A+KEGL   ++V  S+ D+Y+     +
Sbjct: 101 SDCVRPNDFTFPCVLKASTGLRMDTTGKQLHALAVKEGLINDVFVGCSVFDMYSKLGF-L 159

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           ++A  VF++M  +N  +W   I+     G     +  F E+L  G + +  +F   + AC
Sbjct: 160 NDAYKVFDEMPHRNLETWNAYISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCAFLNAC 219

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           +    +  G  +H  +I+ G+G N+ V N ++D Y +   +  +   FD M E++ ++W+
Sbjct: 220 SDKLGLGPGCQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSWS 279

Query: 285 TIIAGYEKSGSSE---CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           ++IA Y ++   E   CL  F + + E   P  F  +S++ ACA L+ +  G+ V A  V
Sbjct: 280 SLIAAYVQNNEEEKASCL--FLRARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAV 337

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           +  ++ N+ +A+AL+DMY KCG+I ++++ F+ M +R+LV+W +++ GY   GH  +A+ 
Sbjct: 338 KACVEQNIFVASALVDMYGKCGSIDNAEQAFNAMPERNLVSWNALLGGYAHQGHANKAVA 397

Query: 402 LFDEMVKS-GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDL 459
           L +EM  + G+ P  +  +  L+ACS AG +  G+K F+SM + Y V P  E Y C+VDL
Sbjct: 398 LLEEMTSAAGIVPSYVSLICALSACSRAGDLKTGMKIFESMKERYGVEPGPEHYACLVDL 457

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
           LGRAG V+ AY+ IK MPF P  S+WG LLGAC+ H  P LGKLAA ++ +L P   G +
Sbjct: 458 LGRAGMVECAYDFIKRMPFPPTISIWGALLGACRMHGKPELGKLAAEKLFELDPKDSGNH 517

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVY 579
           ++LSN++AA G+WEE    R  M+ +G KK  G SWI V  ++  F A DK       + 
Sbjct: 518 VVLSNMFAATGRWEEVTVVRNEMKEVGIKKGAGFSWITVDSRIHMFQAKDKSHEKDPEIQ 577

Query: 580 GVLEMLIRHMNETA 593
            +L  L + M + A
Sbjct: 578 DILGKLRKEMQDAA 591


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 196/562 (34%), Positives = 323/562 (57%), Gaps = 11/562 (1%)

Query: 45  PSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           P++ + N LI +Y  E LI  A  LFD++P+ D+VS+  +I  Y        A ++F EM
Sbjct: 72  PNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEM 131

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
               +  + FT S V+ AC     L     +H +A   G +  + V+NSL+  Y+   I 
Sbjct: 132 REMGLVMDGFTFSGVITACCNHVGLIRQ--LHSLAFSSGFDSYVSVKNSLLTYYSKNGI- 188

Query: 164 MDNARLVFNDM--KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
           ++ A +VFN M  + +++VSW ++I  Y     G   L ++++M+  G E++ ++ +  +
Sbjct: 189 LEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVL 248

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC-LSDANQYFDEMTEKDL 280
              +    +S G   HA  IK GF  N  V + ++DMY +    +S++ + F+E+   DL
Sbjct: 249 TTFSCVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDL 308

Query: 281 ITWNTIIAGYE--KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           + WNT+I+GY   K  S E L  F +M+   + P+  +F   I+AC+ L++ S G+Q HA
Sbjct: 309 VVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHA 368

Query: 339 GIVRRGLDGN-LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
             ++  +  N +++ NAL+ MY+KCGN+ D++K+F  M   + VT  S++ GY  HG G 
Sbjct: 369 LAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGT 428

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCV 456
           E++ LF++M+ + + P  I  +++L+AC+H G V+EG KYF  M D + + P  E Y C+
Sbjct: 429 ESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCM 488

Query: 457 VDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMM 516
           +DLLGRAG++ EA  LI +MPF P  + W  LLGAC+++    L + AA + L L+P   
Sbjct: 489 IDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRKYGNMELAEKAANQFLQLEPTNA 548

Query: 517 GTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQ 576
             YI+L+++Y+A  KWEE A+ RK+MR  G +K+ G SWIE+  +V  F+A D      +
Sbjct: 549 VPYIMLASMYSAARKWEEAARIRKLMRDRGIRKKPGCSWIELNKRVHVFVAEDNSHPRIK 608

Query: 577 YVYGVLEMLIRHMNETAYEPDI 598
            ++  L+ +   M    Y PD+
Sbjct: 609 EIHMYLDEMFVKMKRAGYVPDV 630



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 76/352 (21%), Positives = 136/352 (38%), Gaps = 69/352 (19%)

Query: 309 RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISD- 367
           +FS    +F  I+ +C     L  G+ +H   ++  +  +  L+N  I +Y+KC  ++  
Sbjct: 3   QFSWTLQSFRQILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTA 62

Query: 368 ------------------------------SQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
                                         +  +F ++   DLV++ +++  Y   G   
Sbjct: 63  HHAFNQTHEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTL 122

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTA-CSHAGLVDE--GLKYFKSMNDYNVNPNKEIYG 454
            A+ LF EM + G+  D   F  V+TA C+H GL+ +   L +    + Y    N     
Sbjct: 123 SALSLFGEMREMGLVMDGFTFSGVITACCNHVGLIRQLHSLAFSSGFDSYVSVKNS---- 178

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFK-PDESVWGPLLGACKEHRLPNLGKLAALRVL---D 510
            ++    + G ++EA  +   M  +  DE  W  ++ A  +H+   L  LA  R +    
Sbjct: 179 -LLTYYSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHK-RGLKALALYRDMVHRG 236

Query: 511 LKPNMMGTYIILSNIYAAE---GKWEEFAKFRKIMRGMGSKKEVGMSWIE---------- 557
            + +M     +L+     E   G  +  AK   I  G    + VG   I+          
Sbjct: 237 FEIDMFTLASVLTTFSCVEDLSGGLQFHAK--AIKTGFNKNRHVGSGLIDMYAKCGAGMS 294

Query: 558 ----VRDKVCG---FIANDKMGSHTQYVYGVLEML--IRHMNETAYEPDIDC 600
               V +++CG    + N  +  ++Q     +E L   R M    Y PD DC
Sbjct: 295 ESRKVFEEICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPD-DC 345



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 42/82 (51%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           IP     +   L+  Y   G +++AR LF  MP+ + V+   +IAGY       ++  +F
Sbjct: 375 IPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLF 434

Query: 101 VEMVRNEVNPNAFTLSSVLKAC 122
            +M+   + P + TL S+L AC
Sbjct: 435 EQMLAASIAPTSITLVSILSAC 456


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 191/544 (35%), Positives = 316/544 (58%), Gaps = 12/544 (2%)

Query: 76   DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVH 135
            +V SW  +IA         +A   F  + +  + P   +    +K+C  +  L +  + H
Sbjct: 1979 NVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSH 2038

Query: 136  GMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNG 195
              A   G E  ++V ++L+D+Y+ C   + +AR +F+++  +N VSWT++ITGY  +   
Sbjct: 2039 QQAFVFGFETDLFVSSALIDMYSKCG-QLKDARALFDEIPLRNVVSWTSMITGYVQNEQA 2097

Query: 196  YGGLGVFKEMLLEGVEMN-----PYSFSIAVR---ACASTGWVSFGKLIHAAVIKHGFGS 247
               L +FK+ L E  E+      P    + V    AC+        + +H  V+K GF  
Sbjct: 2098 DNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDG 2157

Query: 248  NLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKM- 305
            ++ V N+++D Y +      + + FD M EKD I+WN++IA Y +SG S E L +F  M 
Sbjct: 2158 SIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMV 2217

Query: 306  KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNI 365
            +      N  T ++++ ACA   AL  G+ +H  +++  L+ N+ +  ++IDMY KCG +
Sbjct: 2218 RHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRV 2277

Query: 366  SDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTAC 425
              ++K F  M ++++ +WT+M+ GYG HG  KEA+++F +MV++GV+P+ I F++VL AC
Sbjct: 2278 EMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAAC 2337

Query: 426  SHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESV 484
            SHAGLV+EG  +F +M + Y++ P  E YGC+VDL GRAG + EAY LIK M  KPD  V
Sbjct: 2338 SHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVV 2397

Query: 485  WGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544
            WG LLGAC+ H+  +LG++AA ++ +L P+  G Y++LSN+YA  G+W +  + R +M+ 
Sbjct: 2398 WGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKN 2457

Query: 545  MGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHD 604
                K  G S +E++ +V  F+  DK   H + +Y  LE L   + +  Y P++  ++HD
Sbjct: 2458 RQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHD 2517

Query: 605  LEGE 608
            ++ E
Sbjct: 2518 VDEE 2521



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 118/394 (29%), Positives = 200/394 (50%), Gaps = 41/394 (10%)

Query: 118 VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK 177
           +L+ CK  K L     +H   I+ GL     +   L+ +Y+T    +  A L+F  ++  
Sbjct: 33  LLQNCKNFKHLRQ---IHAKIIRSGLSNDQLLTRKLIHLYSTHG-RIAYAILLFYQIQNP 88

Query: 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIH 237
              +W  +I     +G     L ++K M+ +G+  + ++F   ++AC +   +  GK++H
Sbjct: 89  CTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVH 148

Query: 238 AAVIKHGFGSNLPVMNSILDMYCRFDC--------------------------------- 264
            ++IK+GF  ++ V N+++D Y  F C                                 
Sbjct: 149 GSLIKYGFSGDVFVQNNLIDFY--FKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGD 206

Query: 265 LSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAA 323
           L +A + FDE+  K++++W  +I GY ++    E L +F +M++E   PN +T  S+I A
Sbjct: 207 LQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKA 266

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTW 383
           C  +  L+ G+ +H   ++  ++  + L  ALIDMY+KCG+I D+ ++F  M  + L TW
Sbjct: 267 CTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTW 326

Query: 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND 443
            SM+   G HG G+EA+ LF EM +  V+PD I F+ VL AC H   V EG  YF  M  
Sbjct: 327 NSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQ 386

Query: 444 -YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
            Y + P  E Y C+ +L  R+  + EA++  K +
Sbjct: 387 HYGIAPIPEHYECMTELYARSNNLDEAFKSTKEV 420



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 121/364 (33%), Positives = 187/364 (51%), Gaps = 35/364 (9%)

Query: 47   ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR- 105
             +++ LI  Y   G +++AR LFDE+P R+VVSWT MI GY      + A  +F + +  
Sbjct: 2051 FVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEE 2110

Query: 106  -------NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA 158
                   N V  ++  + SVL AC  +        VHG  +K+G +GSI V N+LMD YA
Sbjct: 2111 ETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYA 2170

Query: 159  TCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSF 217
             C   + + + VF+ M+ K+D+SW ++I  YA SG     L VF  M+   GV  N  + 
Sbjct: 2171 KCGQPLVSKK-VFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTL 2229

Query: 218  SIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE 277
            S  + ACA  G +  GK IH  VIK     N+ V  SI+DMYC+   +  A + FD M E
Sbjct: 2230 SAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKE 2289

Query: 278  KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQV 336
            K++ +W  ++AGY   G + E L++F KM      PN  TF S++AAC+           
Sbjct: 2290 KNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACS----------- 2338

Query: 337  HAGIVRRG------------LDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTW 383
            HAG+V  G            ++  +     ++D++ + G ++++  +   M  + D V W
Sbjct: 2339 HAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVW 2398

Query: 384  TSMM 387
             S++
Sbjct: 2399 GSLL 2402



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 160/362 (44%), Gaps = 32/362 (8%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
            +L   LI  Y   G I  A  LF ++      +W ++I   T      QA  ++  MV 
Sbjct: 59  QLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVC 118

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC----- 160
             +  + FT   V+KAC    S+    +VHG  IK G  G ++V+N+L+D Y  C     
Sbjct: 119 QGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRF 178

Query: 161 -------------------------CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNG 195
                                    C  +  AR +F+++  KN VSWT +I GY  +   
Sbjct: 179 ALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQP 238

Query: 196 YGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSI 255
              L +FK M  E +  N Y+    ++AC   G ++ G+ IH   IK+     + +  ++
Sbjct: 239 EEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTAL 298

Query: 256 LDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNC 314
           +DMY +   + DA + F+ M  K L TWN++I      G   E LN+FS+M+     P+ 
Sbjct: 299 IDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDA 358

Query: 315 FTFTSIIAACATLAALSCGQQVHAGIVRR-GLDGNLALANALIDMYAKCGNISDSQKIFS 373
            TF  ++ AC  +  +  G      + +  G+         + ++YA+  N+ ++ K   
Sbjct: 359 ITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTK 418

Query: 374 EM 375
           E+
Sbjct: 419 EV 420



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 155/325 (47%), Gaps = 44/325 (13%)

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
           + IHA +I+ G  ++  +   ++ +Y     ++ A   F ++      TWN II     +
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 294 GSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
           G SE  L ++  M  +  + + FTF  +I AC    ++  G+ VH  +++ G  G++ + 
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQ 163

Query: 353 NALIDMYAKCG-------------------------------NISDSQKIFSEMSDRDLV 381
           N LID Y KCG                               ++ ++++IF E+  +++V
Sbjct: 164 NNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVV 223

Query: 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441
           +WT+M+ GY  +   +EA+ELF  M    + P+    ++++ AC+  G++  G    + +
Sbjct: 224 SWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLG----RGI 279

Query: 442 NDYNVNPNKEI----YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
           +DY +    EI       ++D+  + G +K+A E+ ++MP K     W  ++ +   H L
Sbjct: 280 HDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRK-SLPTWNSMITSLGVHGL 338

Query: 498 PN--LGKLAALRVLDLKPNMMGTYI 520
               L   + +  +++KP+ + T+I
Sbjct: 339 GQEALNLFSEMERVNVKPDAI-TFI 362


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 207/564 (36%), Positives = 321/564 (56%), Gaps = 38/564 (6%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L   L+++Y   G     R +FDE+P+++VV + VMI  Y + + ++ A  VF  M  + 
Sbjct: 73  LGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHG 132

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           ++P+ +T   VLKA  G + L     +H   ++ GL+ +++V N L+ +Y  C   ++  
Sbjct: 133 IDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEAC 192

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R V + M  ++ VSW +L+ G A +G     L V KEM L G  + P + ++A       
Sbjct: 193 R-VLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLG--LKPDAGTMA------- 242

Query: 228 GWVSFGKLIHAAVIKHGFGSNLP-VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
                              S LP V N+ LD       +S   + F ++  K L++WN +
Sbjct: 243 -------------------SLLPAVTNTCLDN------VSFVKEMFMKLANKSLVSWNVM 277

Query: 287 IAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           IA Y   S  +E +++F +M+     P+  +  S++ AC  L+AL  G+++H  +VR+ L
Sbjct: 278 IAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRL 337

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             NL L NALIDMYAKCG +  ++++F +M  RD+V+WTSM+  YG +G G++A+ LF  
Sbjct: 338 QPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSR 397

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDY-NVNPNKEIYGCVVDLLGRAG 464
           M   G+ PD I F++VL+ACSHAGL+DEG  YFK M +   + P  E + C+VDLLGRAG
Sbjct: 398 MQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAG 457

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           +V EAY  IK MP +P+E VWG LL AC+ +    +G LAA ++  L P   G Y++LSN
Sbjct: 458 QVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSN 517

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           IYA  G+WE+    R IM+  G KK  G+S  E+ ++V  F+A D+    ++ +Y  L++
Sbjct: 518 IYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDV 577

Query: 585 LIRHMNETAYEPDIDCLIHDLEGE 608
            +  M E  Y P+ D  +HD+E E
Sbjct: 578 SVGKMKEAGYVPETDSALHDVEEE 601



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 164/356 (46%), Gaps = 17/356 (4%)

Query: 230 VSFGKLIHAAV-IKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
           + + K +H+ + I H   SN  +   ++  Y            FDE+ +K+++ +N +I 
Sbjct: 51  IKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIR 110

Query: 289 GYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
            Y  +   S+ L +F  M      P+ +T+  ++ A +    L  G Q+HA +VR GLD 
Sbjct: 111 SYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDL 170

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           N+ + N LI MY KCG + ++ ++  +M  RD+V+W S++ G   +G   +A+E+  EM 
Sbjct: 171 NVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEME 230

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
             G++PD     ++L A ++  L  + + + K M     N +   +  ++ +        
Sbjct: 231 LLGLKPDAGTMASLLPAVTNTCL--DNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPA 288

Query: 468 EAYELIKSM---PFKPDESVWGPLLGACKEHRLPNLGKLAALRVL--DLKPNMMGTYIIL 522
           EA ++   M      PD      +L AC +     LG+     V+   L+PN++    ++
Sbjct: 289 EAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALI 348

Query: 523 SNIYAAEGKWE------EFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMG 572
            ++YA  G  E      +  KFR ++         GM+  + RD V  F     +G
Sbjct: 349 -DMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNG-KGRDAVSLFSRMQDLG 402



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 45  PSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           P++L  N LI  Y   G +E AR +FD+M  RDVVSWT MI+ Y        A ++F  M
Sbjct: 339 PNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRM 398

Query: 104 VRNEVNPNAFTLSSVLKAC 122
               +NP++    SVL AC
Sbjct: 399 QDLGLNPDSIAFVSVLSAC 417


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 195/530 (36%), Positives = 312/530 (58%), Gaps = 7/530 (1%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGY-TSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACK 123
           A +L  ++   ++  +  +I G  TS N   +   V+ +M+   + P+ +T+  VLKAC 
Sbjct: 77  ALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACA 136

Query: 124 GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWT 183
             +++     VHG AIK GL   +YV N+LM +YA C + + +AR VF+    ++ VSWT
Sbjct: 137 ESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDV-IRSARKVFDTSPQRDLVSWT 195

Query: 184 TLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH 243
           T+I GY   G    G+G+F EM  E ++ +  +  I + +CA  G +  G+ +H  +I++
Sbjct: 196 TMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRN 255

Query: 244 GFGSNLPVM--NSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLN 300
               NL V   N+++DMY +    + A + F EM  K++++WN++I+G  + G   E L 
Sbjct: 256 S-NVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLY 314

Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360
           MF KM+     P+  T  +++ +CA L  L  G+ VHA + R  +  +  + NAL+DMYA
Sbjct: 315 MFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYA 374

Query: 361 KCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420
           KCG+I  +  +F  M+ +D+ ++T+M++G   HG G +A++LF EM K G+ PD + F+ 
Sbjct: 375 KCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVG 434

Query: 421 VLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
           VLTACSH GLV+EG KYF+ M+  YN+ P  E YGC+VDLLGRAG + EA E I++MP +
Sbjct: 435 VLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIE 494

Query: 480 PDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFR 539
           PD  V G LLGACK H    LG+    ++  ++P   G Y+++SNIY++  +W +  K R
Sbjct: 495 PDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLR 554

Query: 540 KIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHM 589
           K M+    +K  G S IE+   +  F   DK     + +Y +L+ ++ H+
Sbjct: 555 KTMKERNLEKTPGCSSIELDGVIHEFQKGDKSHPKIKEIYKLLDEIMSHL 604



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 109/380 (28%), Positives = 204/380 (53%), Gaps = 9/380 (2%)

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIK--EGLEGSIYVENSLMDVYA-TCCI 162
           ++ NP+  +  S L+ CK +K L     +H   IK     +  + +   L  + A +  I
Sbjct: 16  HDFNPHKLSFLSTLQTCKSIKGLKQ---IHASIIKTMPSPDAQLTISTRLSALCAQSLPI 72

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGN-GYGGLGVFKEMLLEGVEMNPYSFSIAV 221
               A  +   ++  N   +  +I G A S N    GL V+K+ML +G+  + Y+    +
Sbjct: 73  DPRYALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVL 132

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
           +ACA +  V  G+ +H   IK G  S++ V N+++ MY   D +  A + FD   ++DL+
Sbjct: 133 KACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLV 192

Query: 282 TWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           +W T+I GY K G + E + +F +M  E    +  T   ++++CA L  L  G+++H  I
Sbjct: 193 SWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYI 252

Query: 341 VRRG-LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
           +R   ++ ++ + NAL+DMY KCG+ + ++K+F EM  +++V+W SM+ G    G  KE+
Sbjct: 253 IRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKES 312

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL 459
           + +F +M + GV+PD +  +AVL +C++ G+++ G      ++   +  +  I   +VD+
Sbjct: 313 LYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDM 372

Query: 460 LGRAGRVKEAYELIKSMPFK 479
             + G + +A  + ++M  K
Sbjct: 373 YAKCGSIDQACWVFQAMNRK 392



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 120/447 (26%), Positives = 200/447 (44%), Gaps = 49/447 (10%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           ++  L++ Y    +I  AR +FD  P+RD+VSWT MI GY       +   +F EM    
Sbjct: 162 VSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGEN 221

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIK-EGLEGSIYVENSLMDVYATCCISMDN 166
           +  +  TL  VL +C  +  L     +H   I+   +   ++V N+L+D+Y  C    + 
Sbjct: 222 LQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCG-DANF 280

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR VF +M  KN VSW ++I+G A  G     L +F++M   GV+ +  +    + +CA+
Sbjct: 281 ARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCAN 340

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G +  GK +HA + ++   ++  + N+++DMY +   +  A   F  M  KD+ ++  +
Sbjct: 341 LGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAM 400

Query: 287 IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I G    G   + L++FS+M      P+  TF  ++ AC+           H G+V  G 
Sbjct: 401 IVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACS-----------HVGLVEEG- 448

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSD-----RDLVTWTSMMIGYGAHGHGKEAI 400
                                  +K F +MS        L  +  M+   G  G   EA 
Sbjct: 449 -----------------------RKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAE 485

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE-IYGCVVDL 459
           E    M    + PD  V  A+L AC   G V+ G    K +    + P K+  Y  + ++
Sbjct: 486 EFIRNM---PIEPDAFVLGALLGACKIHGKVELGESVMKKIE--KIEPRKDGAYVLMSNI 540

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWG 486
              A R ++A +L K+M  +  E   G
Sbjct: 541 YSSANRWRDALKLRKTMKERNLEKTPG 567



 Score = 43.5 bits (101), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 37/80 (46%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           +    +   L+  Y   G I++A  +F  M  +DV S+T MI G        +A  +F E
Sbjct: 360 RADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSE 419

Query: 103 MVRNEVNPNAFTLSSVLKAC 122
           M +  + P+  T   VL AC
Sbjct: 420 MPKMGIEPDEVTFVGVLTAC 439


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 198/577 (34%), Positives = 326/577 (56%), Gaps = 14/577 (2%)

Query: 39   PLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWT 98
            P++P     ++ +L+  Y   G++  A   F   PE D++SW  MI+ Y   N   +A  
Sbjct: 927  PVVP-----VSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAIC 981

Query: 99   VFVEMVRNEVNPNAFTLSSVLKACKGMKS---LSNAALVHGMAIKEGLEGSIYVENSLMD 155
             F +++R+ + P+ FTL+SVL+AC         +  + VH  AIK G+    +V  +L+D
Sbjct: 982  TFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALID 1041

Query: 156  VYATCCISMDNARLVFNDMKWKNDV-SWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP 214
            +Y+     MD A  + +  K+  D+ SW  ++ GY  S      L  F  M   G+ ++ 
Sbjct: 1042 LYSKGG-KMDEAEFLLHG-KYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDE 1099

Query: 215  YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE 274
             + + A++A      +  GK I A  IK GF ++L V + +LDMY +   + +A + F E
Sbjct: 1100 ITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGE 1159

Query: 275  MTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG 333
            ++  D + W T+I+GY ++G  +  L+++  M+     P+ +TF ++I A + L AL  G
Sbjct: 1160 ISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQG 1219

Query: 334  QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
            +Q+HA +V+     +  +  +L+DMY KCG++ D+ ++F +M  R +V W +M++G   H
Sbjct: 1220 KQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQH 1279

Query: 394  GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEI 452
            GH  EA+ LF  M  +G++PD++ F+ VL+ACSH+GL  E  KYF +M   Y + P  E 
Sbjct: 1280 GHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEH 1339

Query: 453  YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLK 512
            Y C+VD LGRAGR++EA  +I SMPFK   S++  LLGAC+        K  A ++L L 
Sbjct: 1340 YSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALD 1399

Query: 513  PNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMG 572
            P+    Y++LSNIYAA  +W++    R +M+    KK+ G SWI+V++KV  F+ +D+  
Sbjct: 1400 PSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSH 1459

Query: 573  SHTQYVYGVLEMLIRHMNET-AYEPDIDCLIHDLEGE 608
                 +Y  +E L++ + E  +Y PD D  + D+E E
Sbjct: 1460 PQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEE 1496



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 120/452 (26%), Positives = 203/452 (44%), Gaps = 39/452 (8%)

Query: 52   LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
            L+  Y   GL+ +AR LFD+MPERD V W VM+  Y   +  ++A   F    R+   P+
Sbjct: 758  LVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPD 817

Query: 112  AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
               L  V+        +SN    H   +K                YA      D    +F
Sbjct: 818  FSNLHCVIGGVN--SDVSNNRKRHAEQVK---------------AYAMKMFPFDQGSNIF 860

Query: 172  NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
                     +W   +T + H+G     +  FK +L   +  +  +  I + A      + 
Sbjct: 861  ---------AWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLD 911

Query: 232  FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
             G+ IHA VIK  F   +PV NS+++MY +   +  A + F    E DLI+WNT+I+ Y 
Sbjct: 912  LGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYA 971

Query: 292  KSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAA---LSCGQQVHAGIVRRGLDG 347
            ++    E +  F  +  +   P+ FT  S++ AC+T       + G QVH   ++ G+  
Sbjct: 972  QNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIIN 1031

Query: 348  NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
            +  ++ ALID+Y+K G + +++ +     D DL +W ++M GY      ++A+E F  M 
Sbjct: 1032 DSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMH 1091

Query: 408  KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV----NPNKEIYGCVVDLLGRA 463
            + G+  D I     + A     L++  LK  K +  Y +    N +  +   V+D+  + 
Sbjct: 1092 EMGIPIDEITLATAIKAS--GCLIN--LKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKC 1147

Query: 464  GRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            G +  A EL   +  +PDE  W  ++    E+
Sbjct: 1148 GDMPNALELFGEIS-RPDEVAWTTMISGYIEN 1178



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 105/455 (23%), Positives = 200/455 (43%), Gaps = 44/455 (9%)

Query: 48   LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHN-----QAWTVFVE 102
            L  NLI  Y   G +  AR +FD+  +RD+V+W  ++A Y  F   +     + + +F  
Sbjct: 648  LTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGL 707

Query: 103  MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
            +     +    TL+ +LK C     +  +  VHG A+K G E  ++V  +L+++Y    +
Sbjct: 708  LREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGL 767

Query: 163  SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
             +  ARL+F+ M  ++ V W  ++  Y  +      L  F      G   +  +    + 
Sbjct: 768  -VGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFSNLHCVIG 826

Query: 223  ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
               S   VS  +  HA  +K       P                     FD+ +  ++  
Sbjct: 827  GVNSD--VSNNRKRHAEQVKAYAMKMFP---------------------FDQGS--NIFA 861

Query: 283  WNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
            WN  +  +  +G     ++ F  +       +  T   I++A      L  G+Q+HA ++
Sbjct: 862  WNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVI 921

Query: 342  RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
            +      + ++N+L++MY+K G +  ++K F    + DL++W +M+  Y  +    EAI 
Sbjct: 922  KSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAIC 981

Query: 402  LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK-------EIYG 454
             F ++++ G++PD+    +VL ACS     DEG +YF   +  +V   K        +  
Sbjct: 982  TFRDLLRDGLKPDQFTLASVLRACSTG---DEG-EYFTLGSQVHVYAIKCGIINDSFVST 1037

Query: 455  CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
             ++DL  + G++ EA E +    +  D + W  ++
Sbjct: 1038 ALIDLYSKGGKMDEA-EFLLHGKYDFDLASWNAIM 1071



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 98/199 (49%), Gaps = 6/199 (3%)

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
           R+  +   +  GK  HA ++  G   +  + N+++ MY +   L  A Q FD+ +++DL+
Sbjct: 619 RSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLV 678

Query: 282 TWNTIIAGYEKSGSS------ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ 335
           TWN+I+A Y +   S      E   +F  ++   FS    T   ++  C     +   + 
Sbjct: 679 TWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSET 738

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
           VH   V+ G + +L ++ AL+++Y K G +  ++ +F +M +RD V W  M+  Y  +  
Sbjct: 739 VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSF 798

Query: 396 GKEAIELFDEMVKSGVRPD 414
             EA+  F    +SG  PD
Sbjct: 799 QDEALRFFSAFHRSGFFPD 817



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 80/387 (20%), Positives = 164/387 (42%), Gaps = 39/387 (10%)

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179
           ++   M  L      H   +  G     Y+ N+L+ +Y+ C  S+ +AR VF+    ++ 
Sbjct: 619 RSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCG-SLCSARQVFDKSSDRDL 677

Query: 180 VSWTTLITGYAHSGN--------GYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           V+W +++  YA   +        G+   G+ +E    G  +   + +  ++ C  +G+V 
Sbjct: 678 VTWNSILAAYAQFADSSYENVLEGFRLFGLLREF---GFSITRLTLAPLLKLCLLSGFVQ 734

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY- 290
             + +H   +K GF  +L V  +++++YC++  +  A   FD+M E+D + WN ++  Y 
Sbjct: 735 VSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYV 794

Query: 291 EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           E S   E L  FS      F P+      +I    +   +S  ++ HA  V+        
Sbjct: 795 ENSFQDEALRFFSAFHRSGFFPDFSNLHCVIGGVNS--DVSNNRKRHAEQVK-------- 844

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
                   YA         K+F      ++  W   +  +   G    AI+ F  +++S 
Sbjct: 845 -------AYA--------MKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRST 889

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470
           +  D +  + +L+A   A  +D G +    +   +  P   +   ++++  +AG V  A 
Sbjct: 890 IGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAE 949

Query: 471 ELIKSMPFKPDESVWGPLLGACKEHRL 497
           +   + P + D   W  ++ +  ++ L
Sbjct: 950 KTFINSP-ELDLISWNTMISSYAQNNL 975



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 88/182 (48%), Gaps = 14/182 (7%)

Query: 327 LAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSM 386
           +A L  G++ HA IV  G   +  L N LI MY+KCG++  ++++F + SDRDLVTW S+
Sbjct: 624 MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 387 MIGYGAHGHGK-----EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441
           +  Y            E   LF  + + G    R+    +L  C  +G V    +  +++
Sbjct: 684 LAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFV----QVSETV 739

Query: 442 NDYNVNPNKE----IYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
           + Y V    E    + G +V++  + G V +A  L   MP + D  +W  +L A  E+  
Sbjct: 740 HGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPER-DAVLWNVMLKAYVENSF 798

Query: 498 PN 499
            +
Sbjct: 799 QD 800


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 190/451 (42%), Positives = 280/451 (62%), Gaps = 6/451 (1%)

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA- 220
           +S+D+ R +F  M  K+ VSW T+I G A +G     L + +EM   G  + P SF+++ 
Sbjct: 248 MSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREM--GGANLKPDSFTLSS 305

Query: 221 -VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
            +   A    +S GK IH   I+ G  + + V +S++DMY +   + D+ + F  +TE+D
Sbjct: 306 VLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERD 365

Query: 280 LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
            I+WN+IIAG  ++G   E L  F +M   +  P  ++F+SI+ ACA L  L  G+Q+H 
Sbjct: 366 GISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHG 425

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
            I R G D N+ +A++L+DMYAKCGNI  +++IF  M  RD+V+WT+M++G   HGH  +
Sbjct: 426 YITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALD 485

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVV 457
           AIELF++M   G+ P+ + FMAVLTACSHAGLVDE  KYF SM  D+ + P  E Y  V 
Sbjct: 486 AIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVS 545

Query: 458 DLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG 517
           DLLGRAGR++EAY+ I  MP  P  SVW  LL AC+ H+  ++ +  A R+L++ P   G
Sbjct: 546 DLLGRAGRLEEAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKNTG 605

Query: 518 TYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQY 577
            YI+L+NIY+A  +W+E AK+R  +R  G +K    SWIEVR+KV  F+A D+     + 
Sbjct: 606 AYILLANIYSAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGDESHPCYEK 665

Query: 578 VYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           +   +E+L+  M +  Y PD   + HD+E E
Sbjct: 666 IREAMEVLMELMEKEGYVPDTSEVHHDVEEE 696



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 91/281 (32%), Positives = 157/281 (55%), Gaps = 13/281 (4%)

Query: 62  IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121
           ++  R +F+ MPE+D+VSW  +IAG      + +  T+  EM    + P++FTLSSVL  
Sbjct: 250 VDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPL 309

Query: 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS 181
                 +S    +HG +I++GL+  +YV +SL+D+YA C   +D+ R VF  +  ++ +S
Sbjct: 310 IAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYR-VFTLLTERDGIS 368

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           W ++I G   +G    GL  F++ML+  ++   YSFS  + ACA    +  GK +H  + 
Sbjct: 369 WNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYIT 428

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLN 300
           ++GF  N+ + +S++DMY +   +  A Q FD M  +D+++W  +I G    G + + + 
Sbjct: 429 RNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIE 488

Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           +F +MK+E   PN   F +++ AC+           HAG+V
Sbjct: 489 LFEQMKTEGIEPNYVAFMAVLTACS-----------HAGLV 518



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 117/482 (24%), Positives = 223/482 (46%), Gaps = 47/482 (9%)

Query: 61  LIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLK 120
           L+ ++  LF+ +     ++W  +I  YTS    +++   F+ M+ + + P+     SVLK
Sbjct: 57  LLHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLK 116

Query: 121 ACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDV 180
           AC  +  L+    +HG  I+ GL+  +Y  N+LM++Y+       + R      +  +++
Sbjct: 117 ACAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEM 176

Query: 181 SWTTLITGYAHSGNGYGGLGV----------------FKEMLLEGVEMNPYSFSIAVRAC 224
           +  T     A    G  G  V                F+  +LE ++  P S    + AC
Sbjct: 177 TERTRSVRTASVLVGNQGRKVSDIEAFNYDVSCRSREFEAQVLE-IDYKPRSEYREMEAC 235

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
                 + G+ I    I H                     +    + F+ M EKDL++WN
Sbjct: 236 ------NLGQQIKD--ISHSMS------------------VDSVRKIFEMMPEKDLVSWN 269

Query: 285 TIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           TIIAG  ++G   E L M  +M      P+ FT +S++   A    +S G+++H   +R+
Sbjct: 270 TIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQ 329

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           GLD  + +A++LIDMYAKC  + DS ++F+ +++RD ++W S++ G   +G   E ++ F
Sbjct: 330 GLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFF 389

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
            +M+ + ++P    F +++ AC+H   +  G +    +     + N  I   +VD+  + 
Sbjct: 390 RQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKC 449

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGAC--KEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           G ++ A ++   M  + D   W  ++  C    H L  +     ++   ++PN +    +
Sbjct: 450 GNIRTARQIFDRMRLR-DMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAV 508

Query: 522 LS 523
           L+
Sbjct: 509 LT 510



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 118/226 (52%), Gaps = 2/226 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A++LI  Y     + ++  +F  + ERD +SW  +IAG       ++    F +M+  +
Sbjct: 337 VASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAK 396

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + P +++ SS++ AC  + +L     +HG   + G + +I++ +SL+D+YA C  ++  A
Sbjct: 397 IKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCG-NIRTA 455

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R +F+ M+ ++ VSWT +I G A  G+    + +F++M  EG+E N  +F   + AC+  
Sbjct: 456 RQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHA 515

Query: 228 GWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYF 272
           G V    K  ++  +  G    +    ++ D+  R   L +A  + 
Sbjct: 516 GLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFI 561



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 90/413 (21%), Positives = 176/413 (42%), Gaps = 64/413 (15%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM 174
           ++S+L+    +KS S A  +H   +K     S+   + L+ +Y+   +  D+ RL FN +
Sbjct: 11  VNSLLRNPLSIKSRSQAQQLHAQVLKFQ-ASSLCNLSLLLSIYSHINLLHDSLRL-FNTL 68

Query: 175 KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGK 234
            +   ++W ++I  Y   G  +  LG F  ML  G+  +   F   ++ACA    ++ G+
Sbjct: 69  HFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMDLNLGE 128

Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSD-------ANQYFDEMTEKDL-ITWNTI 286
            +H  +I+ G   +L   N++++MY +   L         A+Q  DEMTE+   +   ++
Sbjct: 129 SLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRSVRTASV 188

Query: 287 IAGYE--KSGSSECLNMFSKMKSERFSPNCFTFT-SIIAACATLAALSCGQQVHAGIVRR 343
           + G +  K    E  N     +S  F            +    + A + GQQ        
Sbjct: 189 LVGNQGRKVSDIEAFNYDVSCRSREFEAQVLEIDYKPRSEYREMEACNLGQQ-------- 240

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
                       I   +   ++   +KIF  M ++DLV+W +++ G   +G   E + + 
Sbjct: 241 ------------IKDISHSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMV 288

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC-------- 455
            EM  + ++PD     +VL       L+ E +         +++  KEI+GC        
Sbjct: 289 REMGGANLKPDSFTLSSVLP------LIAENV---------DISKGKEIHGCSIRQGLDA 333

Query: 456 -------VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLG 501
                  ++D+  +  RV ++Y +  ++  + D   W  ++  C ++ L + G
Sbjct: 334 EVYVASSLIDMYAKCTRVVDSYRVF-TLLTERDGISWNSIIAGCVQNGLFDEG 385



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 134/318 (42%), Gaps = 50/318 (15%)

Query: 204 EMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFD 263
           E L+  +  NP   SI  R+ A        + +HA V+K    S+L  ++ +L +Y   +
Sbjct: 8   EALVNSLLRNP--LSIKSRSQA--------QQLHAQVLKFQ-ASSLCNLSLLLSIYSHIN 56

Query: 264 CLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIA 322
            L D+ + F+ +     + W ++I  Y   G   + L  F  M +    P+   F S++ 
Sbjct: 57  LLHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLK 116

Query: 323 ACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDS-------QKIFSEM 375
           ACA L  L+ G+ +H  I+R GLD +L   NAL++MY+K   +  S        ++  EM
Sbjct: 117 ACAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEM 176

Query: 376 SDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAV----------LTAC 425
           ++R     T+ ++  G  G     IE F+  V    R      + +          + AC
Sbjct: 177 TERTRSVRTASVL-VGNQGRKVSDIEAFNYDVSCRSREFEAQVLEIDYKPRSEYREMEAC 235

Query: 426 ---------SHAGLVDEGLKYFKSMNDYNVNPNKEI--YGCVVDLLGRAGRVKEAYELIK 474
                    SH+  VD   K F+ M      P K++  +  ++    R G   E   +++
Sbjct: 236 NLGQQIKDISHSMSVDSVRKIFEMM------PEKDLVSWNTIIAGNARNGLYGETLTMVR 289

Query: 475 SM---PFKPDESVWGPLL 489
            M     KPD      +L
Sbjct: 290 EMGGANLKPDSFTLSSVL 307


>gi|297802780|ref|XP_002869274.1| hypothetical protein ARALYDRAFT_491483 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315110|gb|EFH45533.1| hypothetical protein ARALYDRAFT_491483 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 686

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 210/577 (36%), Positives = 328/577 (56%), Gaps = 25/577 (4%)

Query: 24  QSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVM 83
           Q   +V KS ++SD         ++  + I  Y   G    AR +FDEMP +D++SW  +
Sbjct: 120 QLQSTVVKSGLESDL--------VVGNSFITMYSRSGSFRGARRVFDEMPFKDMISWNSL 171

Query: 84  IAGYTSFNCHN-QAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG 142
           ++G +       +A  +F +M+R  V  +  + +SV+  C     L  A  +HG+ IK G
Sbjct: 172 LSGLSQEGTFGFEAVLIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRG 231

Query: 143 LEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVF 202
            E  + V N LM  Y+ C + ++  + VF  M  +N VSWTT+I     S N    + +F
Sbjct: 232 YESLLEVGNILMSRYSKCGV-LEAVKSVFYQMSERNVVSWTTMI-----SSNRDDAVSIF 285

Query: 203 KEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRF 262
             M L+GV  N  +F   + A      +  G  IH   IK GF S   V NS + MY +F
Sbjct: 286 LNMRLDGVYPNEVTFVGLLNAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITMYAKF 345

Query: 263 DCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSII 321
           + L DA + FD++T +++I+WN +I+G+ ++G S E L MF    +E   PN +TF S++
Sbjct: 346 EALEDAKKAFDDITFREIISWNAMISGFAQNGFSHEALKMFLSATAETM-PNEYTFGSVL 404

Query: 322 AACATLAALSC--GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD 379
            A A    +S   GQ+ HA +++ GL+    +++AL+DMYAK GNI++S+K+F+EMS R+
Sbjct: 405 NAIAFAEDISVKHGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNINESEKVFNEMSQRN 464

Query: 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439
              WTS++  Y +HG     + LF EM+K  V PD + F++VLTAC+  G+VD+G +   
Sbjct: 465 QFVWTSIISAYSSHGDFNSVMNLFHEMIKENVAPDLVTFLSVLTACNRKGMVDKGHEILN 524

Query: 440 SM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLP 498
            M  DYN+ P+ E Y C+VD+LGRAGR+KEA EL+  +P  P ES+   +LG+C+ H   
Sbjct: 525 MMIEDYNLEPSHEHYSCMVDMLGRAGRLKEAEELMSEVPGGPGESMLQSMLGSCRLHGNV 584

Query: 499 NLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEV 558
            +G   A   +++KP + G+Y+ + NIYA + +W++ A+ RK MR     KE G SWI+V
Sbjct: 585 KMGAKVAELAMEMKPELSGSYVQMYNIYAEKEQWDKAAEIRKAMRKKNVSKEAGFSWIDV 644

Query: 559 RD-----KVCGFIANDKMGSHTQYVYGVLEMLIRHMN 590
            D      + GF + DK    +  +Y ++E++   MN
Sbjct: 645 GDTEGSLTMQGFSSGDKSHPKSDEIYRMVEIVGLEMN 681



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 114/443 (25%), Positives = 221/443 (49%), Gaps = 13/443 (2%)

Query: 56  YFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTL 115
           Y   G  + A  +F+ + + DVVSW  +++G   F+ +  A    V M    V  +AFT 
Sbjct: 46  YRKAGRFDNALYIFENLVDPDVVSWNTILSG---FDDNQIALNFVVRMKSAGVVFDAFTY 102

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMK 175
           S+ L  C G +       +    +K GLE  + V NS + +Y+    S   AR VF++M 
Sbjct: 103 STALSFCVGSEGFRLGLQLQSTVVKSGLESDLVVGNSFITMYSRSG-SFRGARRVFDEMP 161

Query: 176 WKNDVSWTTLITGYAHSGN-GYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGK 234
           +K+ +SW +L++G +  G  G+  + +F++M+ EGVE++  SF+  +  C     +   +
Sbjct: 162 FKDMISWNSLLSGLSQEGTFGFEAVLIFRDMMREGVELDHVSFTSVITTCCHETDLKLAR 221

Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG 294
            IH   IK G+ S L V N ++  Y +   L      F +M+E+++++W T+I+    S 
Sbjct: 222 QIHGLCIKRGYESLLEVGNILMSRYSKCGVLEAVKSVFYQMSERNVVSWTTMIS----SN 277

Query: 295 SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
             + +++F  M+ +   PN  TF  ++ A      +  G ++H   ++ G     ++ N+
Sbjct: 278 RDDAVSIFLNMRLDGVYPNEVTFVGLLNAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNS 337

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
            I MYAK   + D++K F +++ R++++W +M+ G+  +G   EA+++F       + P+
Sbjct: 338 FITMYAKFEALEDAKKAFDDITFREIISWNAMISGFAQNGFSHEALKMFLSATAETM-PN 396

Query: 415 RIVFMAVLTACSHAG--LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
              F +VL A + A    V  G +    +    +N    +   ++D+  + G + E+ ++
Sbjct: 397 EYTFGSVLNAIAFAEDISVKHGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNINESEKV 456

Query: 473 IKSMPFKPDESVWGPLLGACKEH 495
              M  + ++ VW  ++ A   H
Sbjct: 457 FNEMS-QRNQFVWTSIISAYSSH 478



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 165/325 (50%), Gaps = 13/325 (4%)

Query: 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFND 173
           TL   LKAC+G   L     +HG +   G    + V N++M +Y       DNA  +F +
Sbjct: 5   TLCLALKACRG--DLKRGCQIHGFSTTCGFTSFVCVSNAVMGMYRKAG-RFDNALYIFEN 61

Query: 174 MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG 233
           +   + VSW T+++G+    +    L     M   GV  + +++S A+  C  +     G
Sbjct: 62  LVDPDVVSWNTILSGF---DDNQIALNFVVRMKSAGVVFDAFTYSTALSFCVGSEGFRLG 118

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
             + + V+K G  S+L V NS + MY R      A + FDEM  KD+I+WN++++G  + 
Sbjct: 119 LQLQSTVVKSGLESDLVVGNSFITMYSRSGSFRGARRVFDEMPFKDMISWNSLLSGLSQE 178

Query: 294 GS--SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLAL 351
           G+   E + +F  M  E    +  +FTS+I  C     L   +Q+H   ++RG +  L +
Sbjct: 179 GTFGFEAVLIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYESLLEV 238

Query: 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411
            N L+  Y+KCG +   + +F +MS+R++V+WT+M+       +  +A+ +F  M   GV
Sbjct: 239 GNILMSRYSKCGVLEAVKSVFYQMSERNVVSWTTMI-----SSNRDDAVSIFLNMRLDGV 293

Query: 412 RPDRIVFMAVLTACSHAGLVDEGLK 436
            P+ + F+ +L A      + EGLK
Sbjct: 294 YPNEVTFVGLLNAVKCNEQIKEGLK 318



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 123/217 (56%), Gaps = 5/217 (2%)

Query: 212 MNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQY 271
           M+  +  +A++AC   G +  G  IH      GF S + V N+++ MY +     +A   
Sbjct: 1   MDEVTLCLALKAC--RGDLKRGCQIHGFSTTCGFTSFVCVSNAVMGMYRKAGRFDNALYI 58

Query: 272 FDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALS 331
           F+ + + D+++WNTI++G++ +  +  LN   +MKS     + FT+++ ++ C       
Sbjct: 59  FENLVDPDVVSWNTILSGFDDNQIA--LNFVVRMKSAGVVFDAFTYSTALSFCVGSEGFR 116

Query: 332 CGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG 391
            G Q+ + +V+ GL+ +L + N+ I MY++ G+   ++++F EM  +D+++W S++ G  
Sbjct: 117 LGLQLQSTVVKSGLESDLVVGNSFITMYSRSGSFRGARRVFDEMPFKDMISWNSLLSGLS 176

Query: 392 AHG-HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH 427
             G  G EA+ +F +M++ GV  D + F +V+T C H
Sbjct: 177 QEGTFGFEAVLIFRDMMREGVELDHVSFTSVITTCCH 213


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 198/577 (34%), Positives = 326/577 (56%), Gaps = 14/577 (2%)

Query: 39   PLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWT 98
            P++P     ++ +L+  Y   G++  A   F   PE D++SW  MI+ Y   N   +A  
Sbjct: 927  PVVP-----VSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAIC 981

Query: 99   VFVEMVRNEVNPNAFTLSSVLKACKGMKS---LSNAALVHGMAIKEGLEGSIYVENSLMD 155
             F +++R+ + P+ FTL+SVL+AC         +  + VH  AIK G+    +V  +L+D
Sbjct: 982  TFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALID 1041

Query: 156  VYATCCISMDNARLVFNDMKWKNDV-SWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP 214
            +Y+     MD A  + +  K+  D+ SW  ++ GY  S      L  F  M   G+ ++ 
Sbjct: 1042 LYSKGG-KMDEAEFLLHG-KYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDE 1099

Query: 215  YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE 274
             + + A++A      +  GK I A  IK GF ++L V + +LDMY +   + +A + F E
Sbjct: 1100 ITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGE 1159

Query: 275  MTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG 333
            ++  D + W T+I+GY ++G  +  L+++  M+     P+ +TF ++I A + L AL  G
Sbjct: 1160 ISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQG 1219

Query: 334  QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
            +Q+HA +V+     +  +  +L+DMY KCG++ D+ ++F +M  R +V W +M++G   H
Sbjct: 1220 KQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQH 1279

Query: 394  GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEI 452
            GH  EA+ LF  M  +G++PD++ F+ VL+ACSH+GL  E  KYF +M   Y + P  E 
Sbjct: 1280 GHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEH 1339

Query: 453  YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLK 512
            Y C+VD LGRAGR++EA  +I SMPFK   S++  LLGAC+        K  A ++L L 
Sbjct: 1340 YSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALD 1399

Query: 513  PNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMG 572
            P+    Y++LSNIYAA  +W++    R +M+    KK+ G SWI+V++KV  F+ +D+  
Sbjct: 1400 PSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSH 1459

Query: 573  SHTQYVYGVLEMLIRHMNET-AYEPDIDCLIHDLEGE 608
                 +Y  +E L++ + E  +Y PD D  + D+E E
Sbjct: 1460 PQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEE 1496



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 120/452 (26%), Positives = 203/452 (44%), Gaps = 39/452 (8%)

Query: 52   LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
            L+  Y   GL+ +AR LFD+MPERD V W VM+  Y   +  ++A   F    R+   P+
Sbjct: 758  LVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPD 817

Query: 112  AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
               L  V+        +SN    H   +K                YA      D    +F
Sbjct: 818  FSNLHCVIGGVN--SDVSNNRKRHAEQVK---------------AYAMKMFPFDQGSNIF 860

Query: 172  NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
                     +W   +T + H+G     +  FK +L   +  +  +  I + A      + 
Sbjct: 861  ---------AWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLD 911

Query: 232  FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
             G+ IHA VIK  F   +PV NS+++MY +   +  A + F    E DLI+WNT+I+ Y 
Sbjct: 912  LGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYA 971

Query: 292  KSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAA---LSCGQQVHAGIVRRGLDG 347
            ++    E +  F  +  +   P+ FT  S++ AC+T       + G QVH   ++ G+  
Sbjct: 972  QNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIIN 1031

Query: 348  NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
            +  ++ ALID+Y+K G + +++ +     D DL +W ++M GY      ++A+E F  M 
Sbjct: 1032 DSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMH 1091

Query: 408  KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV----NPNKEIYGCVVDLLGRA 463
            + G+  D I     + A     L++  LK  K +  Y +    N +  +   V+D+  + 
Sbjct: 1092 EMGIPIDEITLATAIKAS--GCLIN--LKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKC 1147

Query: 464  GRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            G +  A EL   +  +PDE  W  ++    E+
Sbjct: 1148 GDMPNALELFGEIS-RPDEVAWTTMISGYIEN 1178



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 105/455 (23%), Positives = 200/455 (43%), Gaps = 44/455 (9%)

Query: 48   LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHN-----QAWTVFVE 102
            L  NLI  Y   G +  AR +FD+  +RD+V+W  ++A Y  F   +     + + +F  
Sbjct: 648  LTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGL 707

Query: 103  MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
            +     +    TL+ +LK C     +  +  VHG A+K G E  ++V  +L+++Y    +
Sbjct: 708  LREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGL 767

Query: 163  SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
             +  ARL+F+ M  ++ V W  ++  Y  +      L  F      G   +  +    + 
Sbjct: 768  -VGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNLHCVIG 826

Query: 223  ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
               S   VS  +  HA  +K       P                     FD+ +  ++  
Sbjct: 827  GVNSD--VSNNRKRHAEQVKAYAMKMFP---------------------FDQGS--NIFA 861

Query: 283  WNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
            WN  +  +  +G     ++ F  +       +  T   I++A      L  G+Q+HA ++
Sbjct: 862  WNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVI 921

Query: 342  RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
            +      + ++N+L++MY+K G +  ++K F    + DL++W +M+  Y  +    EAI 
Sbjct: 922  KSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAIC 981

Query: 402  LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK-------EIYG 454
             F ++++ G++PD+    +VL ACS     DEG +YF   +  +V   K        +  
Sbjct: 982  TFRDLLRDGLKPDQFTLASVLRACSTG---DEG-EYFTLGSQVHVYAIKCGIINDSFVST 1037

Query: 455  CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
             ++DL  + G++ EA E +    +  D + W  ++
Sbjct: 1038 ALIDLYSKGGKMDEA-EFLLHGKYDFDLASWNAIM 1071



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 98/199 (49%), Gaps = 6/199 (3%)

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
           R+  +   +  GK  HA ++  G   +  + N+++ MY +   L  A Q FD+ +++DL+
Sbjct: 619 RSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLV 678

Query: 282 TWNTIIAGYEKSGSS------ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ 335
           TWN+I+A Y +   S      E   +F  ++   FS    T   ++  C     +   + 
Sbjct: 679 TWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSET 738

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
           VH   V+ G + +L ++ AL+++Y K G +  ++ +F +M +RD V W  M+  Y  +  
Sbjct: 739 VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSF 798

Query: 396 GKEAIELFDEMVKSGVRPD 414
             EA+  F    +SG  PD
Sbjct: 799 QDEALRFFSAFHRSGFXPD 817



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/387 (20%), Positives = 164/387 (42%), Gaps = 39/387 (10%)

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179
           ++   M  L      H   +  G     Y+ N+L+ +Y+ C  S+ +AR VF+    ++ 
Sbjct: 619 RSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCG-SLCSARQVFDKSSDRDL 677

Query: 180 VSWTTLITGYAHSGN--------GYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           V+W +++  YA   +        G+   G+ +E    G  +   + +  ++ C  +G+V 
Sbjct: 678 VTWNSILAAYAQFADSSYENVLEGFRLFGLLREF---GFSITRLTLAPLLKLCLLSGFVQ 734

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY- 290
             + +H   +K GF  +L V  +++++YC++  +  A   FD+M E+D + WN ++  Y 
Sbjct: 735 VSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYV 794

Query: 291 EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           E S   E L  FS      F P+      +I    +   +S  ++ HA  V+        
Sbjct: 795 ENSFQDEALRFFSAFHRSGFXPDFSNLHCVIGGVNS--DVSNNRKRHAEQVK-------- 844

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
                   YA         K+F      ++  W   +  +   G    AI+ F  +++S 
Sbjct: 845 -------AYA--------MKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRST 889

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470
           +  D +  + +L+A   A  +D G +    +   +  P   +   ++++  +AG V  A 
Sbjct: 890 IGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAE 949

Query: 471 ELIKSMPFKPDESVWGPLLGACKEHRL 497
           +   + P + D   W  ++ +  ++ L
Sbjct: 950 KTFINSP-ELDLISWNTMISSYAQNNL 975



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 88/182 (48%), Gaps = 14/182 (7%)

Query: 327 LAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSM 386
           +A L  G++ HA IV  G   +  L N LI MY+KCG++  ++++F + SDRDLVTW S+
Sbjct: 624 MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 387 MIGYGAHGHGK-----EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441
           +  Y            E   LF  + + G    R+    +L  C  +G V    +  +++
Sbjct: 684 LAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFV----QVSETV 739

Query: 442 NDYNVNPNKE----IYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
           + Y V    E    + G +V++  + G V +A  L   MP + D  +W  +L A  E+  
Sbjct: 740 HGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPER-DAVLWNVMLKAYVENSF 798

Query: 498 PN 499
            +
Sbjct: 799 QD 800


>gi|297815974|ref|XP_002875870.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321708|gb|EFH52129.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 700

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 206/562 (36%), Positives = 312/562 (55%), Gaps = 7/562 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + ++L+  Y   G IE++  +F EMP R+ V+WT +I G      + +  T F EM  +E
Sbjct: 139 VGSSLLDMYKRVGKIEKSCRVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSSSE 198

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
              + FT +  LKAC G++ +     +H   I  G + +++V NSL  +Y T C  M + 
Sbjct: 199 ELSDTFTFAIALKACAGLRQVKYGKQIHTHVIVRGFDATVWVANSLATMY-TECGEMRDG 257

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             +F +M  ++ VSWT+LI  Y   G+    +  F +M    V  N  +F+    ACAS 
Sbjct: 258 LCLFENMSERDVVSWTSLIVAYNRIGHEEKAVETFIKMRNSQVPPNEQTFATMFSACASL 317

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             + +G+ +H  V   G   +L V NS++ MY     L  A+  F  M  +D+I+W+TII
Sbjct: 318 SRLVWGEQLHCNVFSLGLNDSLSVSNSMMKMYSTCGKLDSASVLFQGMRCRDIISWSTII 377

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            GY ++G   E    FS M+     P  F   S+++    +A L  G+QVHA     GL+
Sbjct: 378 GGYSQAGFGEEAFKYFSWMRQSGPKPTDFALASLLSVSGNMAVLEGGRQVHALAFCFGLE 437

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            N  + + LI+MY+KCGNI ++ KIF E    D+V+ T+M+ GY  HG  KEAI+LF++ 
Sbjct: 438 QNSTVRSTLINMYSKCGNIKEASKIFEETDRDDIVSLTAMINGYAEHGKSKEAIDLFEKS 497

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGR 465
           +K G  PD + F++VLTAC+H+G +D G  YF  M + YN+ P KE YGC+VDLL RAGR
Sbjct: 498 LKVGFSPDSVTFISVLTACTHSGQLDLGFHYFNLMQEKYNMRPAKEHYGCMVDLLCRAGR 557

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           + EA ++I  M +K D+ VW  LL ACK       G+ AA R+L+L P      + L+NI
Sbjct: 558 LSEAEKMIDEMSWKKDDVVWTTLLIACKAKGDIERGRRAAERILELDPTCATALVTLANI 617

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           Y++ G  EE A  RK M+  G  KE G S I+++D V  F++ D+    ++ +Y +LE++
Sbjct: 618 YSSTGNLEEAANVRKNMKAKGVIKEPGWSSIKIKDCVSAFVSGDRFHPLSEDIYNILELV 677

Query: 586 IRHMNETAYEPDIDCLIHDLEG 607
           +      A     DC I  + G
Sbjct: 678 V----SGAEAHRFDCTIKRVFG 695



 Score =  257 bits (657), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 134/425 (31%), Positives = 242/425 (56%), Gaps = 4/425 (0%)

Query: 53  IKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM--VRNEVNP 110
           ++S  + G +  AR +FD+MP RD+VSWT +I GY + N  ++A  +F  M  V   V+P
Sbjct: 41  LRSLINAGNLRVARQVFDKMPHRDIVSWTAIIKGYVTANNSDEAMILFSAMRVVDPAVSP 100

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           +   +S VLKAC    +++    +H  A+K  L  S++V +SL+D+Y        + R V
Sbjct: 101 DTSVVSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVFVGSSLLDMYKRVGKIEKSCR-V 159

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F++M ++N V+WT +ITG  H+G    GL  F EM       + ++F+IA++ACA    V
Sbjct: 160 FSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSSSEELSDTFTFAIALKACAGLRQV 219

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
            +GK IH  VI  GF + + V NS+  MY     + D    F+ M+E+D+++W ++I  Y
Sbjct: 220 KYGKQIHTHVIVRGFDATVWVANSLATMYTECGEMRDGLCLFENMSERDVVSWTSLIVAY 279

Query: 291 EKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
            + G  E  +  F KM++ +  PN  TF ++ +ACA+L+ L  G+Q+H  +   GL+ +L
Sbjct: 280 NRIGHEEKAVETFIKMRNSQVPPNEQTFATMFSACASLSRLVWGEQLHCNVFSLGLNDSL 339

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
           +++N+++ MY+ CG +  +  +F  M  RD+++W++++ GY   G G+EA + F  M +S
Sbjct: 340 SVSNSMMKMYSTCGKLDSASVLFQGMRCRDIISWSTIIGGYSQAGFGEEAFKYFSWMRQS 399

Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
           G +P      ++L+   +  +++ G +       + +  N  +   ++++  + G +KEA
Sbjct: 400 GPKPTDFALASLLSVSGNMAVLEGGRQVHALAFCFGLEQNSTVRSTLINMYSKCGNIKEA 459

Query: 470 YELIK 474
            ++ +
Sbjct: 460 SKIFE 464



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 174/327 (53%), Gaps = 4/327 (1%)

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYS--FSIAVRAC 224
           AR VF+ M  ++ VSWT +I GY  + N    + +F  M +    ++P +   S+ ++AC
Sbjct: 53  ARQVFDKMPHRDIVSWTAIIKGYVTANNSDEAMILFSAMRVVDPAVSPDTSVVSVVLKAC 112

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
             +  +++G+ +HA  +K    S++ V +S+LDMY R   +  + + F EM  ++ +TW 
Sbjct: 113 GQSSNIAYGESLHAYAVKTSLLSSVFVGSSLLDMYKRVGKIEKSCRVFSEMPFRNAVTWT 172

Query: 285 TIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            II G   +G   E L  FS+M S     + FTF   + ACA L  +  G+Q+H  ++ R
Sbjct: 173 AIITGLVHAGRYKEGLTYFSEMSSSEELSDTFTFAIALKACAGLRQVKYGKQIHTHVIVR 232

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G D  + +AN+L  MY +CG + D   +F  MS+RD+V+WTS+++ Y   GH ++A+E F
Sbjct: 233 GFDATVWVANSLATMYTECGEMRDGLCLFENMSERDVVSWTSLIVAYNRIGHEEKAVETF 292

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
            +M  S V P+   F  + +AC+    +  G +   ++    +N +  +   ++ +    
Sbjct: 293 IKMRNSQVPPNEQTFATMFSACASLSRLVWGEQLHCNVFSLGLNDSLSVSNSMMKMYSTC 352

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLG 490
           G++  A  L + M  + D   W  ++G
Sbjct: 353 GKLDSASVLFQGMRCR-DIISWSTIIG 378



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 66/123 (53%), Gaps = 10/123 (8%)

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM--VKSGVRPDRIVFMA 420
           GN+  ++++F +M  RD+V+WT+++ GY    +  EA+ LF  M  V   V PD  V   
Sbjct: 48  GNLRVARQVFDKMPHRDIVSWTAIIKGYVTANNSDEAMILFSAMRVVDPAVSPDTSVVSV 107

Query: 421 VLTACSHAGLVDEGLKYFKSMNDYNVNPN--KEIY--GCVVDLLGRAGRVKEAYELIKSM 476
           VL AC  +      + Y +S++ Y V  +    ++    ++D+  R G+++++  +   M
Sbjct: 108 VLKACGQSS----NIAYGESLHAYAVKTSLLSSVFVGSSLLDMYKRVGKIEKSCRVFSEM 163

Query: 477 PFK 479
           PF+
Sbjct: 164 PFR 166



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 77/171 (45%), Gaps = 7/171 (4%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S + + LI  Y   G I+EA  +F+E    D+VS T MI GY       +A  +F + ++
Sbjct: 440 STVRSTLINMYSKCGNIKEASKIFEETDRDDIVSLTAMINGYAEHGKSKEAIDLFEKSLK 499

Query: 106 NEVNPNAFTLSSVLKACKGMKSLS-NAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
              +P++ T  SVL AC     L       + M  K  +  +      ++D+       +
Sbjct: 500 VGFSPDSVTFISVLTACTHSGQLDLGFHYFNLMQEKYNMRPAKEHYGCMVDLLCRAG-RL 558

Query: 165 DNARLVFNDMKW-KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP 214
             A  + ++M W K+DV WTTL+      G+   G    + +L    E++P
Sbjct: 559 SEAEKMIDEMSWKKDDVVWTTLLIACKAKGDIERGRRAAERIL----ELDP 605


>gi|356551789|ref|XP_003544256.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 758

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 186/557 (33%), Positives = 315/557 (56%), Gaps = 14/557 (2%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+  Y   G +E+AR +FD M  R+VV+WT ++ G+   +    A  VF EM+     P+
Sbjct: 108 LVNVYAKCGNMEDARRVFDNMLRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPS 167

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
            +TLS+VL AC  ++SL      H   IK  ++    V ++L  +Y+ C   +++A   F
Sbjct: 168 VYTLSAVLHACSSLQSLKLGDQFHAYIIKYHVDFDASVGSALCSLYSKCG-RLEDALKTF 226

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           + ++ KN +SWT+ ++  A +G    GL +F EM+   ++ N ++ + A+  C     + 
Sbjct: 227 SRIREKNVISWTSAVSACADNGAPVKGLRLFVEMIAVDIKPNEFTLTSALSQCCEILSLE 286

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            G  +++  IK G+ SNL V NS+L +Y +  C+ +A++ F+ M +  ++TWN +IAG+ 
Sbjct: 287 LGTQVYSLCIKFGYESNLRVRNSLLYLYLKSGCIVEAHRLFNRMDDASMVTWNAMIAGHA 346

Query: 292 K------------SGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           +               SE L +FSK+      P+ FT +S+++ C+ + A+  G+Q+HA 
Sbjct: 347 QMMELTKDNLSACHRGSEALKLFSKLNLSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQ 406

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
            ++ G   ++ ++ +LI MY+KCG+I  + K F EMS R ++ WTSM+ G+  HG  ++A
Sbjct: 407 TIKTGFLSDVIVSTSLISMYSKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQA 466

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVD 458
           + +F++M  +GVRP+ + F+ VL+ACSHAG+V + L YF+ M   Y + P  + Y C+VD
Sbjct: 467 LHIFEDMSLAGVRPNAVTFVGVLSACSHAGMVSQALNYFEIMQKKYKIKPAMDHYECMVD 526

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518
           +  R GR+++A   IK M ++P E +W   +  CK H    LG  AA ++L LKP    T
Sbjct: 527 MFVRLGRLEQALNFIKKMNYEPSEFIWSNFIAGCKSHGNLELGFYAAEQLLSLKPKDPET 586

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
           Y++L N+Y +  ++E+ ++ RK+M      K    SWI ++DKV  F  N K    +  +
Sbjct: 587 YVLLLNMYLSAERFEDVSRVRKMMEEEKVGKLKDWSWISIKDKVYSFKTNGKTHPQSSLI 646

Query: 579 YGVLEMLIRHMNETAYE 595
              LE L+  +    YE
Sbjct: 647 CKSLEDLLAKVKNVGYE 663



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 101/329 (30%), Positives = 183/329 (55%), Gaps = 13/329 (3%)

Query: 118 VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK 177
           +L+ C   +S S   +VHG  +K G   + +V + L++VYA C  +M++AR VF++M  +
Sbjct: 73  LLQQCLDTRSYSETQIVHGHVMKTGCHDNFFVMSFLVNVYAKCG-NMEDARRVFDNMLRR 131

Query: 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIH 237
           N V+WTTL+ G+  +      + VF+EML  G   + Y+ S  + AC+S   +  G   H
Sbjct: 132 NVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSVYTLSAVLHACSSLQSLKLGDQFH 191

Query: 238 AAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS- 296
           A +IK+    +  V +++  +Y +   L DA + F  + EK++I+W + ++    +G+  
Sbjct: 192 AYIIKYHVDFDASVGSALCSLYSKCGRLEDALKTFSRIREKNVISWTSAVSACADNGAPV 251

Query: 297 ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALI 356
           + L +F +M +    PN FT TS ++ C  + +L  G QV++  ++ G + NL + N+L+
Sbjct: 252 KGLRLFVEMIAVDIKPNEFTLTSALSQCCEILSLELGTQVYSLCIKFGYESNLRVRNSLL 311

Query: 357 DMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG-----------AHGHGKEAIELFDE 405
            +Y K G I ++ ++F+ M D  +VTW +M+ G+            A   G EA++LF +
Sbjct: 312 YLYLKSGCIVEAHRLFNRMDDASMVTWNAMIAGHAQMMELTKDNLSACHRGSEALKLFSK 371

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEG 434
           +  SG++PD     +VL+ CS    +++G
Sbjct: 372 LNLSGMKPDLFTLSSVLSVCSRMLAIEQG 400



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 138/257 (53%), Gaps = 1/257 (0%)

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           ++ C  T   S  +++H  V+K G   N  VM+ ++++Y +   + DA + FD M  +++
Sbjct: 74  LQQCLDTRSYSETQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFDNMLRRNV 133

Query: 281 ITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           + W T++ G+ + S     +++F +M      P+ +T ++++ AC++L +L  G Q HA 
Sbjct: 134 VAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSVYTLSAVLHACSSLQSLKLGDQFHAY 193

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
           I++  +D + ++ +AL  +Y+KCG + D+ K FS + ++++++WTS +     +G   + 
Sbjct: 194 IIKYHVDFDASVGSALCSLYSKCGRLEDALKTFSRIREKNVISWTSAVSACADNGAPVKG 253

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL 459
           + LF EM+   ++P+     + L+ C     ++ G + +     +    N  +   ++ L
Sbjct: 254 LRLFVEMIAVDIKPNEFTLTSALSQCCEILSLELGTQVYSLCIKFGYESNLRVRNSLLYL 313

Query: 460 LGRAGRVKEAYELIKSM 476
             ++G + EA+ L   M
Sbjct: 314 YLKSGCIVEAHRLFNRM 330



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 129/262 (49%), Gaps = 18/262 (6%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSF---------NCH--NQAWTV 99
           +L+  Y   G I EA  LF+ M +  +V+W  MIAG+             CH  ++A  +
Sbjct: 309 SLLYLYLKSGCIVEAHRLFNRMDDASMVTWNAMIAGHAQMMELTKDNLSACHRGSEALKL 368

Query: 100 FVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
           F ++  + + P+ FTLSSVL  C  M ++     +H   IK G    + V  SL+ +Y+ 
Sbjct: 369 FSKLNLSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYSK 428

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
           C  S++ A   F +M  +  ++WT++ITG++  G     L +F++M L GV  N  +F  
Sbjct: 429 CG-SIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNAVTFVG 487

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNS---ILDMYCRFDCLSDANQYFDEMT 276
            + AC+  G VS   L +  +++  +    P M+    ++DM+ R   L  A  +  +M 
Sbjct: 488 VLSACSHAGMVS-QALNYFEIMQKKYKIK-PAMDHYECMVDMFVRLGRLEQALNFIKKMN 545

Query: 277 -EKDLITWNTIIAGYEKSGSSE 297
            E     W+  IAG +  G+ E
Sbjct: 546 YEPSEFIWSNFIAGCKSHGNLE 567



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 103/200 (51%), Gaps = 3/200 (1%)

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           +  ++  C    + S  Q VH  +++ G   N  + + L+++YAKCGN+ D++++F  M 
Sbjct: 70  YVPLLQQCLDTRSYSETQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFDNML 129

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
            R++V WT++M+G+  +   K AI +F EM+ +G  P      AVL ACS    +  G +
Sbjct: 130 RRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSVYTLSAVLHACSSLQSLKLGDQ 189

Query: 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR 496
           +   +  Y+V+ +  +   +  L  + GR+++A +    +  K   S W   + AC ++ 
Sbjct: 190 FHAYIIKYHVDFDASVGSALCSLYSKCGRLEDALKTFSRIREKNVIS-WTSAVSACADNG 248

Query: 497 LP--NLGKLAALRVLDLKPN 514
            P   L     +  +D+KPN
Sbjct: 249 APVKGLRLFVEMIAVDIKPN 268



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 44/85 (51%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I++T+LI  Y   G IE A   F EM  R +++WT MI G++      QA  +F +M   
Sbjct: 417 IVSTSLISMYSKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLA 476

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNA 131
            V PNA T   VL AC     +S A
Sbjct: 477 GVRPNAVTFVGVLSACSHAGMVSQA 501


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 193/565 (34%), Positives = 322/565 (56%), Gaps = 3/565 (0%)

Query: 46   SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
            + + + LI +Y   G++ +AR +FD +  +D V+WT M++ Y+  +C      +F +M  
Sbjct: 566  AFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRV 625

Query: 106  NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
                 N F L+SVL+A   + S+     +H  ++K   +   +V  +L+D+YA C  +++
Sbjct: 626  AVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCG-NIE 684

Query: 166  NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            +ARL F  +   + + W+ +I+ YA          +F  M+   V  N +S S  ++ACA
Sbjct: 685  DARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACA 744

Query: 226  STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
            +   +  GK IH   IK G  S L V N+++D+Y +   +  + + F  + + + ++WNT
Sbjct: 745  NMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNT 804

Query: 286  IIAGYEKSGSSEC-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
            II GY KSG  E  L++F +M++        T++S++ ACA+ A+++   QVH  I +  
Sbjct: 805  IIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKST 864

Query: 345  LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
             + +  ++N+LID YAKCG I D+++IF  + + DLV+W +++ GY  HG    A ELFD
Sbjct: 865  FNSDTIVSNSLIDSYAKCGCIRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQELFD 924

Query: 405  EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRA 463
             M K+ ++ + I F+A+L+ C   GLV +GL  F SM  D+ + P+ E Y C+V LLGRA
Sbjct: 925  MMSKNSIKANDITFVALLSVCGSTGLVSQGLSLFDSMRLDHGIEPSMEHYTCIVRLLGRA 984

Query: 464  GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
            GR+ +A   I  +P  P   VW  LL +C  H+   LG+ +A +VL+++P    TY++LS
Sbjct: 985  GRLNDALNFIGDIPSAPSAMVWRALLSSCIVHKNVELGRFSAEKVLEIEPQDETTYVLLS 1044

Query: 524  NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
            N+Y+A G  ++ A FRK MR +G +KE G+SW+E++ +V  F    +     + +  +LE
Sbjct: 1045 NMYSAAGSLDQVAFFRKSMRNIGVRKEPGLSWVEIKGEVHAFSVGSEDHPCMRVINAMLE 1104

Query: 584  MLIRHMNETAYEPDIDCLIHDLEGE 608
             L        Y PD D ++HDLE E
Sbjct: 1105 WLNLKAIREGYVPDTDEVLHDLEEE 1129



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 123/429 (28%), Positives = 228/429 (53%), Gaps = 2/429 (0%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108
           A  L+  Y   G    A  +FD +PER++VS+  ++ G+       +A  +F  +     
Sbjct: 468 ANVLLNMYTKVGPFGSAHRVFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLRWEGH 527

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
             N F L++VLK    M +L  A  VH  A K G + + +V ++L+D Y+ C +  D AR
Sbjct: 528 EVNQFVLTTVLKLVVAMDTLGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSD-AR 586

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            VF+ +  K+ V+WT +++ Y+ +      L +F +M +   ++NP++ +  +RA     
Sbjct: 587 RVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLS 646

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            V  GK IHA  +K  + +   V  ++LDMY +   + DA   F+ +T  D+I W+ +I+
Sbjct: 647 SVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMIS 706

Query: 289 GYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
            Y +   +E    +F +M     SPN F+ +S++ ACA +  L  G+Q+H   ++ G + 
Sbjct: 707 RYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKIGHES 766

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
            L + NALID+YAKC ++  S +IFS + D + V+W ++++GY   G G+ A+ +F EM 
Sbjct: 767 ELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMR 826

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
            + V   ++ + +VL AC+    ++   +    +     N +  +   ++D   + G ++
Sbjct: 827 AASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIR 886

Query: 468 EAYELIKSM 476
           +A E+ +++
Sbjct: 887 DAREIFETL 895



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 186/373 (49%), Gaps = 12/373 (3%)

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEG--LEGSIYVENSLMDVYATCCISMDNAR 168
           +++  + +L+ C           VHG  ++ G      ++  N L+++Y T      +A 
Sbjct: 427 DSYAYARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMY-TKVGPFGSAH 485

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            VF+ +  +N VS+ TL+ G+A  G       +F+ +  EG E+N +  +  ++   +  
Sbjct: 486 RVFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMD 545

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            +     +HA   K G   N  V ++++D Y     +SDA + FD +  KD + W  +++
Sbjct: 546 TLGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVS 605

Query: 289 GYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
            Y ++   E  L +FSKM+      N F  TS++ A   L+++  G+ +HA  V+   D 
Sbjct: 606 CYSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDT 665

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
              +  AL+DMYAKCGNI D++  F  +++ D++ W+ M+  Y      ++A ELF  M+
Sbjct: 666 ERHVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMM 725

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE----IYGCVVDLLGRA 463
           +S V P+     +VL AC++  L+D G    K ++++ +    E    +   ++DL  + 
Sbjct: 726 RSSVSPNEFSLSSVLQACANMPLLDLG----KQIHNHAIKIGHESELFVGNALIDLYAKC 781

Query: 464 GRVKEAYELIKSM 476
             ++ + E+  S+
Sbjct: 782 SDMESSLEIFSSL 794



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 136/263 (51%), Gaps = 7/263 (2%)

Query: 212 MNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVM--NSILDMYCRFDCLSDAN 269
           ++ Y+++  ++ C + G    G+ +H  V++ G  + L +   N +L+MY +      A+
Sbjct: 426 VDSYAYARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAH 485

Query: 270 QYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLA 328
           + FD + E++++++ T++ G+   G   E   +F +++ E    N F  T+++     + 
Sbjct: 486 RVFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMD 545

Query: 329 ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMI 388
            L     VHA   + G D N  + +ALID Y+ CG +SD++++F  +  +D V WT+M+ 
Sbjct: 546 TLGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVS 605

Query: 389 GYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTA--CSHAGLVDEGLKYFKSMNDYNV 446
            Y  +   +  +++F +M  +  + +     +VL A  C  + ++ +G+        Y+ 
Sbjct: 606 CYSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDT 665

Query: 447 NPNKEIYGCVVDLLGRAGRVKEA 469
              + +YG ++D+  + G +++A
Sbjct: 666 --ERHVYGALLDMYAKCGNIEDA 686


>gi|356561794|ref|XP_003549163.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 615

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 200/538 (37%), Positives = 301/538 (55%), Gaps = 14/538 (2%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           +  + + T L+  Y     +  AR +FDEMP+R VVSW  M++ Y+  +  +QA ++  E
Sbjct: 78  QADTFVQTALVDMYSKCSHVASARQVFDEMPQRSVVSWNAMVSAYSRRSSMDQALSLLKE 137

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAAL---VHGMAIKEGLEGSIYVE----NSLMD 155
           M      P A T  S+L     + S     L   +H   IK G+   +Y+E    NSLM 
Sbjct: 138 MWVLGFEPTASTFVSILSGYSNLDSFEFHLLGKSIHCCLIKLGI---VYLEVSLANSLMG 194

Query: 156 VYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPY 215
           +Y   C+ MD AR VF+ M  K+ +SWTT+I GY   G+     G+F +M  + V ++  
Sbjct: 195 MYVQFCL-MDEARKVFDLMDEKSIISWTTMIGGYVKIGHAVEAYGLFYQMQHQSVGIDFV 253

Query: 216 SFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM 275
            F   +  C     +     +H+ V+K G     PV N ++ MY +   L+ A + FD +
Sbjct: 254 VFLNLISGCIQVRDLLLASSVHSLVLKCGCNEKDPVENLLITMYAKCGNLTSARRIFDLI 313

Query: 276 TEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334
            EK +++W ++IAGY   G   E L++F +M      PN  T  ++++ACA L +LS GQ
Sbjct: 314 IEKSMLSWTSMIAGYVHLGHPGEALDLFRRMIRTDIRPNGATLATVVSACADLGSLSIGQ 373

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
           ++   I   GL+ +  +  +LI MY+KCG+I  ++++F  ++D+DL  WTSM+  Y  HG
Sbjct: 374 EIEEYIFLNGLESDQQVQTSLIHMYSKCGSIVKAREVFERVTDKDLTVWTSMINSYAIHG 433

Query: 395 HGKEAIELFDEMVKS-GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEI 452
            G EAI LF +M  + G+ PD IV+ +V  ACSH+GLV+EGLKYFKSM  D+ + P  E 
Sbjct: 434 MGNEAISLFHKMTTAEGIMPDAIVYTSVFLACSHSGLVEEGLKYFKSMQKDFGITPTVEH 493

Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLK 512
             C++DLLGR G++  A   I+ MP      VWGPLL AC+ H    LG+LA +R+LD  
Sbjct: 494 CTCLIDLLGRVGQLDLALNAIQGMPPDVQAQVWGPLLSACRIHGNVELGELATVRLLDSS 553

Query: 513 PNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDK 570
           P   G+Y++++N+Y + GKW+E    R  M G G  KE G S +EV D    F   ++
Sbjct: 554 PGSSGSYVLMANLYTSLGKWKEAHMMRNSMDGKGLVKESGWSQVEVTDTYHTFAVGNQ 611



 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 127/478 (26%), Positives = 250/478 (52%), Gaps = 11/478 (2%)

Query: 74  ERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAAL 133
            R + +W +MI   T+     Q   ++  M  + V+ N  T   +LKAC  + S+ +  +
Sbjct: 8   RRSLYTWNLMIRDSTNNGFFTQTLNIYSSMAHSGVHGNNLTYPLLLKACANLPSIQHGTM 67

Query: 134 VHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSG 193
           +HG  +K G +   +V+ +L+D+Y+ C   + +AR VF++M  ++ VSW  +++ Y+   
Sbjct: 68  LHGHVLKLGFQADTFVQTALVDMYSKCS-HVASARQVFDEMPQRSVVSWNAMVSAYSRRS 126

Query: 194 NGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSF---GKLIHAAVIKHGFGS-NL 249
           +    L + KEM + G E    +F   +   ++     F   GK IH  +IK G     +
Sbjct: 127 SMDQALSLLKEMWVLGFEPTASTFVSILSGYSNLDSFEFHLLGKSIHCCLIKLGIVYLEV 186

Query: 250 PVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSE 308
            + NS++ MY +F  + +A + FD M EK +I+W T+I GY K G + E   +F +M+ +
Sbjct: 187 SLANSLMGMYVQFCLMDEARKVFDLMDEKSIISWTTMIGGYVKIGHAVEAYGLFYQMQHQ 246

Query: 309 RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDS 368
               +   F ++I+ C  +  L     VH+ +++ G +    + N LI MYAKCGN++ +
Sbjct: 247 SVGIDFVVFLNLISGCIQVRDLLLASSVHSLVLKCGCNEKDPVENLLITMYAKCGNLTSA 306

Query: 369 QKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHA 428
           ++IF  + ++ +++WTSM+ GY   GH  EA++LF  M+++ +RP+      V++AC+  
Sbjct: 307 RRIFDLIIEKSMLSWTSMIAGYVHLGHPGEALDLFRRMIRTDIRPNGATLATVVSACADL 366

Query: 429 GLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPL 488
           G +  G +  + +    +  ++++   ++ +  + G + +A E+ + +  K D +VW  +
Sbjct: 367 GSLSIGQEIEEYIFLNGLESDQQVQTSLIHMYSKCGSIVKAREVFERVTDK-DLTVWTSM 425

Query: 489 LGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA---EGKWEEFAKFRKIMR 543
           + +   H + N   ++    +     +M   I+ ++++ A    G  EE  K+ K M+
Sbjct: 426 INSYAIHGMGN-EAISLFHKMTTAEGIMPDAIVYTSVFLACSHSGLVEEGLKYFKSMQ 482


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  364 bits (935), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 195/560 (34%), Positives = 320/560 (57%), Gaps = 20/560 (3%)

Query: 66  RTLFDEMPER-DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           R++F +  ++  V SW  +IA +       QA   F  M +  ++PN  T    +K+C  
Sbjct: 39  RSMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSS 98

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTT 184
           +  L     +H  A   G    I+V ++L+D+Y+ C   +++AR +F+++  +N VSWT+
Sbjct: 99  LYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGY-LNDARKLFDEIPERNVVSWTS 157

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYS-------------FSIAVRACASTGWVS 231
           +I+GY  +      + +FKE LL  V+   Y                  + ACA     S
Sbjct: 158 MISGYVQNERAREAVFLFKEFLL--VDETDYDEIVGVGVGVDSVLLGCVISACARVCVKS 215

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
             + +H   +K GF   L V N+++D Y +   +S + + FD M E D+ +WN++IA Y 
Sbjct: 216 VTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYA 275

Query: 292 KSG-SSECLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
           ++G S E  ++FS M K      N  T ++++ ACA   AL  G+ +H  +V+  L+ NL
Sbjct: 276 QNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNL 335

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
            +  +++DMY KCG +  ++K F  +  +++ +WT M+ GYG HGHGKEA+++F EM++ 
Sbjct: 336 VVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRC 395

Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKE 468
           G++P+ I F++VL ACSHAGL+ EG  +F  M  +++V P  E Y C+VDLLGRAG +KE
Sbjct: 396 GIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKE 455

Query: 469 AYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA 528
           AY LI+ M  KPD  VWG LLGAC+ H+   LG+++A ++  L P+  G Y++LSNIYA 
Sbjct: 456 AYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYAD 515

Query: 529 EGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRH 588
            G+W++  + R +M+  G  K  G S +E + +V  F+  DK     + +Y  L+ L   
Sbjct: 516 AGRWDDVERMRILMKNHGLLKTPGYSIVEHKGRVHVFLVGDKEHPQHEKIYEYLDELNVK 575

Query: 589 MNETAYEPDIDCLIHDLEGE 608
           + E  Y P++  +++D++ E
Sbjct: 576 LQEVGYMPNVTSVLYDVDVE 595



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 187/366 (51%), Gaps = 38/366 (10%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE-MVRN 106
           +A+ LI  Y   G + +AR LFDE+PER+VVSWT MI+GY       +A  +F E ++ +
Sbjct: 123 VASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLFKEFLLVD 182

Query: 107 EVN----------PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDV 156
           E +           ++  L  V+ AC  +   S    VHG+A+K+G EG + V N+LMD 
Sbjct: 183 ETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDA 242

Query: 157 YATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG-VEMNPY 215
           YA C   +  +R VF+ M+  +  SW +LI  YA +G       +F +M+  G V  N  
Sbjct: 243 YAKCG-EISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAV 301

Query: 216 SFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM 275
           + S  + ACA +G +  GK IH  V+K     NL V  SI+DMYC+   +  A + FD +
Sbjct: 302 TLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRL 361

Query: 276 TEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334
             K++ +W  ++AGY   G   E + +F +M      PN  TF S++AAC+         
Sbjct: 362 KRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACS--------- 412

Query: 335 QVHAGIVRRG------------LDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLV 381
             HAG+++ G            ++  +   + ++D+  + G + ++  +  EM  + D +
Sbjct: 413 --HAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFI 470

Query: 382 TWTSMM 387
            W S++
Sbjct: 471 VWGSLL 476



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 136/280 (48%), Gaps = 14/280 (5%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           +G   +   L+ +Y   G I  +R +FD M E DV SW  +IA Y       +A+++F +
Sbjct: 230 EGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSD 289

Query: 103 MV-RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
           MV R EV  NA TLS+VL AC    +L     +H   +K  LE ++ V  S++D+Y  C 
Sbjct: 290 MVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCG 349

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
             ++ AR  F+ +K KN  SWT ++ GY   G+G   + VF EM+  G++ N  +F   +
Sbjct: 350 -RVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVL 408

Query: 222 RACAST-----GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
            AC+       GW  F K+     ++ G    +   + ++D+  R   L +A     EM 
Sbjct: 409 AACSHAGLLKEGWHWFNKMKCEFDVEPG----IEHYSCMVDLLGRAGYLKEAYGLIQEMK 464

Query: 277 EK-DLITWNTIIAGYEKSGSSECLNMFSKMKSERFSP-NC 314
            K D I W +++       + E L   S  K  +  P NC
Sbjct: 465 VKPDFIVWGSLLGACRIHKNVE-LGEISARKLFKLDPSNC 503


>gi|297808809|ref|XP_002872288.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318125|gb|EFH48547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 690

 Score =  364 bits (935), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 190/547 (34%), Positives = 323/547 (59%), Gaps = 6/547 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++A++L+  Y    L E++  +FDEMPERDV SW  +I+ +       +A  +F  M R+
Sbjct: 142 VVASSLVGMYAKFNLFEDSVQVFDEMPERDVASWNTVISSFYQRGDAEKALELFGRMERS 201

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           +  PN+ +++  + AC  +  L     +H   +K+  E   YV ++L+D+Y  C   ++ 
Sbjct: 202 DFEPNSVSITVAISACSRLLCLERGKEIHRKYLKKEFELDEYVNSALVDMYGRCDF-LEM 260

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR VF  M+ K+ V+W ++I GY   G+    + +   M++EG   +  + +  + AC+ 
Sbjct: 261 AREVFQQMRRKSLVAWNSMIRGYVARGDSKSCVELLNRMIIEGTRPSQTTLTSILMACSR 320

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI-TWNT 285
           +  +  GK +H  VI+    +++ +  S++D+Y +   +  A   F + T+KD++ +WN 
Sbjct: 321 SRNLLHGKFVHGYVIRSVVDADIYINCSLIDLYFKCGEVKLAETVFLK-TQKDVVESWNV 379

Query: 286 IIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I+GY   G+  + ++++ +M S    P+  TFTS+++ C+ LAAL  G+Q+H  I    
Sbjct: 380 MISGYVSVGNWFKAVDVYDQMVSVGVQPDIVTFTSVLSTCSQLAALEKGKQIHLSISESR 439

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           L+ +  L +AL+DMY+KCGN+ ++ +IF+ +  +D+V+WT M+  YG+HG  +EA+  FD
Sbjct: 440 LETDELLLSALLDMYSKCGNVKEASRIFNSIPKKDVVSWTVMISAYGSHGQPREALYHFD 499

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRA 463
           EM K GV+PD + F+AVL+AC HAGL+DEG+KYF  M + Y +  + E Y C++D+LGRA
Sbjct: 500 EMQKFGVKPDGVTFLAVLSACGHAGLIDEGVKYFSQMRSKYGIEASIEQYSCLIDILGRA 559

Query: 464 GRVKEAYELIKSMPFKPDES-VWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           GR+ EAY +++  P   D + +   L  AC  HR   LG   A  +++  P+   TY +L
Sbjct: 560 GRLLEAYGILQQKPETRDNAELLSTLFCACCLHRDHLLGYTIAKLLVEKYPDDASTYTVL 619

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
            N+YA+   W+   + R  M+ +G +K+ G SWIE+ +KVC F A D+     + VY  L
Sbjct: 620 FNLYASGESWDAAKRVRLKMKEVGMRKKPGCSWIEMNEKVCHFFAEDRSHPQAENVYECL 679

Query: 583 EMLIRHM 589
            +L  HM
Sbjct: 680 ALLSGHM 686



 Score =  222 bits (565), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 142/503 (28%), Positives = 261/503 (51%), Gaps = 8/503 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPER-DVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           +L  +LI  YF       AR +F+ +  R DV  W  +++GY+  +  +    VF  ++ 
Sbjct: 39  VLCKSLINVYFACKDHCSARLVFENIDIRSDVYIWNSLVSGYSKNSMFHDTLKVFKRLLN 98

Query: 106 NEVN-PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
             +  P++FT  +V+KA   +       ++H + +K G    + V +SL+ +YA   +  
Sbjct: 99  CPICVPDSFTYPNVIKAYGALGREFLGRMIHTVVVKSGHVCDVVVASSLVGMYAKFNLFE 158

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           D+ + VF++M  ++  SW T+I+ +   G+    L +F  M     E N  S ++A+ AC
Sbjct: 159 DSVQ-VFDEMPERDVASWNTVISSFYQRGDAEKALELFGRMERSDFEPNSVSITVAISAC 217

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           +    +  GK IH   +K  F  +  V ++++DMY R D L  A + F +M  K L+ WN
Sbjct: 218 SRLLCLERGKEIHRKYLKKEFELDEYVNSALVDMYGRCDFLEMAREVFQQMRRKSLVAWN 277

Query: 285 TIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           ++I GY   G S+ C+ + ++M  E   P+  T TSI+ AC+    L  G+ VH  ++R 
Sbjct: 278 SMIRGYVARGDSKSCVELLNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFVHGYVIRS 337

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
            +D ++ +  +LID+Y KCG +  ++ +F +     + +W  M+ GY + G+  +A++++
Sbjct: 338 VVDADIYINCSLIDLYFKCGEVKLAETVFLKTQKDVVESWNVMISGYVSVGNWFKAVDVY 397

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
           D+MV  GV+PD + F +VL+ CS    +++G +   S+++  +  ++ +   ++D+  + 
Sbjct: 398 DQMVSVGVQPDIVTFTSVLSTCSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKC 457

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNMMGTYII 521
           G VKEA  +  S+P K D   W  ++ A   H  P   L     ++   +KP+ +    +
Sbjct: 458 GNVKEASRIFNSIP-KKDVVSWTVMISAYGSHGQPREALYHFDEMQKFGVKPDGVTFLAV 516

Query: 522 LSNIYAAEGKWEEFAKFRKIMRG 544
           LS    A G  +E  K+   MR 
Sbjct: 517 LSACGHA-GLIDEGVKYFSQMRS 538



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 116/365 (31%), Positives = 205/365 (56%), Gaps = 18/365 (4%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC---CISMDNARLVF 171
           L S+L+ C   KSL  A LVH   +  GL   + +  SL++VY  C   C    +ARLVF
Sbjct: 6   LLSLLRECTNTKSLRQAKLVHQRILTVGLRSDVVLCKSLINVYFACKDHC----SARLVF 61

Query: 172 NDMKWKNDVS-WTTLITGYAHSGNGYGGLGVFKEMLLEGVEM-NPYSFSIAVRACASTGW 229
            ++  ++DV  W +L++GY+ +   +  L VFK +L   + + + +++   ++A  + G 
Sbjct: 62  ENIDIRSDVYIWNSLVSGYSKNSMFHDTLKVFKRLLNCPICVPDSFTYPNVIKAYGALGR 121

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
              G++IH  V+K G   ++ V +S++ MY +F+   D+ Q FDEM E+D+ +WNT+I+ 
Sbjct: 122 EFLGRMIHTVVVKSGHVCDVVVASSLVGMYAKFNLFEDSVQVFDEMPERDVASWNTVISS 181

Query: 290 YEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           + + G +E  L +F +M+   F PN  + T  I+AC+ L  L  G+++H   +++  + +
Sbjct: 182 FYQRGDAEKALELFGRMERSDFEPNSVSITVAISACSRLLCLERGKEIHRKYLKKEFELD 241

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
             + +AL+DMY +C  +  ++++F +M  + LV W SM+ GY A G  K  +EL + M+ 
Sbjct: 242 EYVNSALVDMYGRCDFLEMAREVFQQMRRKSLVAWNSMIRGYVARGDSKSCVELLNRMII 301

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP--NKEIY-GC-VVDLLGRAG 464
            G RP +    ++L ACS +      L + K ++ Y +    + +IY  C ++DL  + G
Sbjct: 302 EGTRPSQTTLTSILMACSRS----RNLLHGKFVHGYVIRSVVDADIYINCSLIDLYFKCG 357

Query: 465 RVKEA 469
            VK A
Sbjct: 358 EVKLA 362



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 137/264 (51%), Gaps = 7/264 (2%)

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMY--CRFDCLSDANQYFDEM-TE 277
           +R C +T  +   KL+H  ++  G  S++ +  S++++Y  C+  C   A   F+ +   
Sbjct: 10  LRECTNTKSLRQAKLVHQRILTVGLRSDVVLCKSLINVYFACKDHC--SARLVFENIDIR 67

Query: 278 KDLITWNTIIAGYEK-SGSSECLNMFSKMKSERFS-PNCFTFTSIIAACATLAALSCGQQ 335
            D+  WN++++GY K S   + L +F ++ +     P+ FT+ ++I A   L     G+ 
Sbjct: 68  SDVYIWNSLVSGYSKNSMFHDTLKVFKRLLNCPICVPDSFTYPNVIKAYGALGREFLGRM 127

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
           +H  +V+ G   ++ +A++L+ MYAK     DS ++F EM +RD+ +W +++  +   G 
Sbjct: 128 IHTVVVKSGHVCDVVVASSLVGMYAKFNLFEDSVQVFDEMPERDVASWNTVISSFYQRGD 187

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455
            ++A+ELF  M +S   P+ +     ++ACS    ++ G +  +         ++ +   
Sbjct: 188 AEKALELFGRMERSDFEPNSVSITVAISACSRLLCLERGKEIHRKYLKKEFELDEYVNSA 247

Query: 456 VVDLLGRAGRVKEAYELIKSMPFK 479
           +VD+ GR   ++ A E+ + M  K
Sbjct: 248 LVDMYGRCDFLEMAREVFQQMRRK 271


>gi|125555495|gb|EAZ01101.1| hypothetical protein OsI_23130 [Oryza sativa Indica Group]
          Length = 766

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 195/559 (34%), Positives = 319/559 (57%), Gaps = 6/559 (1%)

Query: 43  KGPSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFV 101
           +G  ++  N L+  Y   GL+++   LF+ + ++D++SW  +IAG+       +A  VF 
Sbjct: 183 RGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFR 242

Query: 102 EM-VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
           +M V    +PN F   S  +AC  + S      +HG++IK  L+  +YV  SL D+YA  
Sbjct: 243 KMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARF 302

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
             ++D+AR+ F  ++  + VSW +++  Y+  G     L +F EM   G+  +  +    
Sbjct: 303 -KNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGL 361

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           + AC     +  G+LIH+ ++K G   ++ V NS+L MY R   LS A   F E+ ++D+
Sbjct: 362 LCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDV 421

Query: 281 ITWNTII-AGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           +TWN+I+ A  + +   E L +FS +     S +  +  ++++A A L      +QVHA 
Sbjct: 422 VTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAY 481

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEM-SDRDLVTWTSMMIGYGAHGHGKE 398
             + GL  +  L+N LID YAKCG++ D+ ++F  M ++RD+ +W+S+++GY   G+ KE
Sbjct: 482 AFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKE 541

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVV 457
           A++LF  M   G+RP+ + F+ VLTACS  G V+EG  Y+  M  +Y + P +E   C+V
Sbjct: 542 ALDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIMEPEYGIVPTREHCSCIV 601

Query: 458 DLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG 517
           DLL RAG++ EA   I  MPF+PD  +W  LL A K H    +GK AA  +L++ P+   
Sbjct: 602 DLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASKMHNDMEMGKRAAEGILNIDPSHSA 661

Query: 518 TYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQY 577
            Y++L NIYAA G W EFA+ +K MR  G KK  G SW++++ ++  FI  D+    ++ 
Sbjct: 662 AYVLLCNIYAASGNWNEFARLKKAMRTSGVKKSPGKSWVKLKGELKVFIVEDRSHPESEE 721

Query: 578 VYGVLEMLIRHMNETAYEP 596
           +Y +LE++   M +  Y P
Sbjct: 722 IYAMLELIGMEMIKAGYVP 740



 Score =  245 bits (626), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 148/491 (30%), Positives = 249/491 (50%), Gaps = 13/491 (2%)

Query: 32  SSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFN 91
           +S  S P     G ++L  +LI  Y      + AR +FDEMP R+ VSW  +IA +    
Sbjct: 72  ASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSARQVFDEMPARNPVSWASVIAAHVQNG 131

Query: 92  CHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVEN 151
               A  +F  M+R+    + F L S ++AC  +  +     VH  A+K      + V+N
Sbjct: 132 RAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQN 191

Query: 152 SLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVE 211
           +L+ +Y+   + +D+  ++F  +K K+ +SW ++I G+A  G     L VF++M++EG  
Sbjct: 192 ALVTMYSKNGL-VDDGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFRKMIVEGSH 250

Query: 212 M-NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQ 270
             N + F  A RAC + G   +G+ IH   IK+    +L V  S+ DMY RF  L  A  
Sbjct: 251 HPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARFKNLDSARV 310

Query: 271 YFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAA 329
            F  +   DL++WN+I+  Y   G  SE L +FS+M+     P+  T   ++ AC    A
Sbjct: 311 AFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDA 370

Query: 330 LSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIG 389
           L  G+ +H+ +V+ GLDG++++ N+L+ MYA+C ++S +  +F E+ D+D+VTW S++  
Sbjct: 371 LYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTA 430

Query: 390 YGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN 449
              H H +E ++LF  + KS    DRI    VL+A +  G  +   +         +  +
Sbjct: 431 CAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAGLVDD 490

Query: 450 KEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL------GACKEHRLPNLGKL 503
           + +   ++D   + G + +A  L + M    D   W  L+      G  KE     L   
Sbjct: 491 RMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKE----ALDLF 546

Query: 504 AALRVLDLKPN 514
           + +R L ++PN
Sbjct: 547 SRMRSLGIRPN 557



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 126/439 (28%), Positives = 214/439 (48%), Gaps = 21/439 (4%)

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEG-------LEGSIYVENSLMDVYATCCISMDNAR 168
           ++++ AC  ++SL     VH   +          L G+  + N L+ +Y  C  + D+AR
Sbjct: 48  AALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCA-APDSAR 106

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            VF++M  +N VSW ++I  +  +G     LG+F  ML  G   + ++   AVRAC   G
Sbjct: 107 QVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELG 166

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            V  G+ +HA  +K   GS+L V N+++ MY +   + D    F+ + +KDLI+W +IIA
Sbjct: 167 DVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIA 226

Query: 289 GYEKSG-SSECLNMFSKMKSE-RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           G+ + G   E L +F KM  E    PN F F S   AC  + +   G+Q+H   ++  LD
Sbjct: 227 GFAQQGFEMEALQVFRKMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLD 286

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            +L +  +L DMYA+  N+  ++  F  +   DLV+W S++  Y   G   EA+ LF EM
Sbjct: 287 RDLYVGCSLSDMYARFKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEM 346

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
             SG+RPD I    +L AC     +  G      +    ++ +  +   ++ +  R   +
Sbjct: 347 RDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDL 406

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDL----KPNMMGTYIIL 522
             A ++   +    D   W  +L AC +H  P       L++  L    +P++    I L
Sbjct: 407 SSAMDVFHEIK-DQDVVTWNSILTACAQHNHPE----EVLKLFSLLNKSEPSL--DRISL 459

Query: 523 SNIYAAEGKWEEFAKFRKI 541
           +N+ +A  +   F   +++
Sbjct: 460 NNVLSASAELGYFEMVKQV 478


>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
 gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 868

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 190/557 (34%), Positives = 316/557 (56%), Gaps = 3/557 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I+ T  +  Y     + +A  LF  +P+ ++ S+  MI GY       QA+ +F+++ +N
Sbjct: 294 IVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKN 353

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
             + +  +LS  L A   +K  S    +HG+AIK  L  +I V N+++D+Y  C  ++  
Sbjct: 354 SFSFDEVSLSGALSAAAVIKGHSEGLQLHGLAIKSNLSSNICVANAILDMYGKCG-ALVE 412

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  +F++M+ ++ VSW  +IT    + +    L  F  ML   +E + +++   ++ACA 
Sbjct: 413 ASGLFDEMEIRDPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAG 472

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
               S G  +H  +IK G G  + V ++++DMY +   + +A +    + E+ +++WN I
Sbjct: 473 QRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRLEEQTMVSWNAI 532

Query: 287 IAGYE-KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+G+  +  S +    FS M      P+ FT+ +++  CA LA +  G+Q+HA +++  L
Sbjct: 533 ISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVGLGKQIHAQMIKLEL 592

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             ++ + + L+DMY+KCGN+ DS  +F +   RD VTW +M+ G+  HG G+EA+ELF+ 
Sbjct: 593 LSDVYITSTLVDMYSKCGNMHDSLLMFRKAPKRDSVTWNAMICGFAYHGLGEEALELFEH 652

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAG 464
           M+   ++P+   F++VL ACSH G   +GL YF+ M   Y + P  E Y C+VD+LGR+G
Sbjct: 653 MLHENIKPNHATFVSVLRACSHVGNAKKGLFYFQKMASIYALEPQLEHYSCMVDILGRSG 712

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           +V+EA  LI+ MPF+ D  +W  LL  CK      + + AA  +L L P     Y +LSN
Sbjct: 713 QVEEALRLIQDMPFEADAIIWRTLLSICKIQGNVEVAEKAASSLLKLDPEDSSAYTLLSN 772

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           IYA  G W++ +K R+ MR    KKE G SWIEV+D+V  F+  DK     + +Y +L++
Sbjct: 773 IYADAGMWQQVSKIRQTMRSHNLKKEPGCSWIEVKDEVHTFLVCDKAHPKCEMIYSLLDL 832

Query: 585 LIRHMNETAYEPDIDCL 601
           LI  M  +   P+ID +
Sbjct: 833 LICDMRRSGCAPEIDTI 849



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 123/452 (27%), Positives = 227/452 (50%), Gaps = 3/452 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +  + L+  Y     +E++  +F E+P+++ +SW+  IAG    +   +   +F EM R 
Sbjct: 193 VTGSALVDMYAKCNSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRK 252

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            +  +  T +SV ++C G+ +      +H  A+K      + V  + +D+YA  C +M +
Sbjct: 253 GIGVSQSTYASVFRSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAK-CDNMSD 311

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  +F+ +   N  S+  +I GYA +  G+    +F ++       +  S S A+ A A 
Sbjct: 312 AYKLFSLLPDHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAV 371

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
               S G  +H   IK    SN+ V N+ILDMY +   L +A+  FDEM  +D ++WN I
Sbjct: 372 IKGHSEGLQLHGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAI 431

Query: 287 IAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I   E++ S  + L+ F  M   +  P+ FT+ S++ ACA   A S G +VH  I++ G+
Sbjct: 432 ITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKSGM 491

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
              + + +AL+DMY+KCG + +++KI   + ++ +V+W +++ G+      +++   F  
Sbjct: 492 GLKMFVGSALVDMYSKCGMMEEAEKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSH 551

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M++ GV PD   +  VL  C++   V  G +    M    +  +  I   +VD+  + G 
Sbjct: 552 MLEMGVEPDNFTYATVLDTCANLATVGLGKQIHAQMIKLELLSDVYITSTLVDMYSKCGN 611

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
           + ++  + +  P K D   W  ++     H L
Sbjct: 612 MHDSLLMFRKAP-KRDSVTWNAMICGFAYHGL 642



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 114/415 (27%), Positives = 220/415 (53%), Gaps = 3/415 (0%)

Query: 60  GLIEEARTLFDEMPER-DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSV 118
           G +E A+ +F+ MP   DVVSW  +I+GY       ++  VF++M    V  +  TL+  
Sbjct: 104 GRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVFLKMRDLGVMFDHTTLAVS 163

Query: 119 LKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKN 178
           LK C  ++       +HG+A++ G +  +   ++L+D+YA C  S++++  VF+++  KN
Sbjct: 164 LKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKCN-SLEDSLDVFSELPDKN 222

Query: 179 DVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHA 238
            +SW+  I G   +     GL +FKEM  +G+ ++  +++   R+CA       G  +H 
Sbjct: 223 WISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVFRSCAGLSASRLGTQLHC 282

Query: 239 AVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-E 297
             +K  FGS++ V  + LDMY + D +SDA + F  + + +L ++N +I GY ++    +
Sbjct: 283 HALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQ 342

Query: 298 CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALID 357
              +F +++   FS +  + +  ++A A +   S G Q+H   ++  L  N+ +ANA++D
Sbjct: 343 AFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLAIKSNLSSNICVANAILD 402

Query: 358 MYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIV 417
           MY KCG + ++  +F EM  RD V+W +++     +    + +  F  M++S + PD   
Sbjct: 403 MYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFT 462

Query: 418 FMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
           + +VL AC+       G++    +    +     +   +VD+  + G ++EA ++
Sbjct: 463 YGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKI 517



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 125/489 (25%), Positives = 227/489 (46%), Gaps = 39/489 (7%)

Query: 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI----------- 162
           T S + + C   ++L      H   I  G   +++V N L+ +Y  CC            
Sbjct: 26  TFSHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEM 85

Query: 163 -------------------SMDNARLVFNDMKWKNDV-SWTTLITGYAHSGNGYGGLGVF 202
                               M+ A+ VFN M    DV SW +LI+GY  +G+    + VF
Sbjct: 86  PQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVF 145

Query: 203 KEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRF 262
            +M   GV  +  + +++++ C+       G  IH   ++ GF  ++   ++++DMY + 
Sbjct: 146 LKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKC 205

Query: 263 DCLSDANQYFDEMTEKDLITWNTIIAG-YEKSGSSECLNMFSKMKSERFSPNCFTFTSII 321
           + L D+   F E+ +K+ I+W+  IAG  +       L +F +M+ +    +  T+ S+ 
Sbjct: 206 NSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVF 265

Query: 322 AACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLV 381
            +CA L+A   G Q+H   ++     ++ +  A +DMYAKC N+SD+ K+FS + D +L 
Sbjct: 266 RSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQ 325

Query: 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441
           ++ +M+IGY  +  G +A +LF ++ K+    D +     L+A +      EGL+     
Sbjct: 326 SYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLA 385

Query: 442 NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACK--EHRLPN 499
              N++ N  +   ++D+ G+ G + EA  L   M  + D   W  ++ AC+  E     
Sbjct: 386 IKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIR-DPVSWNAIITACEQNESEGKT 444

Query: 500 LGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKF--RKIMRGMGSKKEVGMSWIE 557
           L    A+    ++P+   TY  +    A +  +    +   R I  GMG K  VG + ++
Sbjct: 445 LSHFGAMLRSKMEPDEF-TYGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVD 503

Query: 558 VRDKVCGFI 566
           +  K CG +
Sbjct: 504 MYSK-CGMM 511


>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
            mitochondrial [Vitis vinifera]
 gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
          Length = 1048

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 202/560 (36%), Positives = 320/560 (57%), Gaps = 11/560 (1%)

Query: 52   LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
            L+  Y   G +EEAR  F+ +  RD VSW  +I GY      ++A+ +F  M+ + + P+
Sbjct: 491  LVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPD 550

Query: 112  AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
              +L+S+L  C  +++L     VH   +K GL+  +Y  +SL+D+Y  C  +++ AR VF
Sbjct: 551  EVSLASILSGCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCG-AIEAARYVF 609

Query: 172  NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
            + M  ++ VS   +I GYA + +    + +F+EM  EG+  +  +F+  + AC     ++
Sbjct: 610  SCMPSRSVVSMNAIIAGYAQN-DLVEAIDLFQEMQNEGLNPSEITFASLLDACTGPYKLN 668

Query: 232  FGKLIHAAVIKHGF---GSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLITWNTII 287
             G+ IH  + K G    G  L V  S+L MY      +DA+  F E    K  I W  II
Sbjct: 669  LGRQIHCLIQKRGLLYDGDFLGV--SLLVMYMNSQRKTDADILFSEFQYPKSTILWTAII 726

Query: 288  AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            +G+ ++G S E L ++ +M      P+  TF S++ AC+ LA+L  G+ +H+ I   GLD
Sbjct: 727  SGHTQNGCSEEALQLYQEMHRNNARPDQATFASVLRACSILASLGDGRMIHSLIFHVGLD 786

Query: 347  GNLALANALIDMYAKCGNISDSQKIFSEM-SDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             +    +A++DMYAKCG++  S ++F EM S  D+++W SM++G+  +G+ + A+++FDE
Sbjct: 787  SDELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSMIVGFAKNGYAENALKIFDE 846

Query: 406  MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAG 464
            M  + +RPD + F+ VLTACSHAG V EG + F  M + Y + P  +   C++DLLGR G
Sbjct: 847  MKHTRIRPDDVTFLGVLTACSHAGRVSEGREIFDIMVHSYKIVPRLDHCACMIDLLGRWG 906

Query: 465  RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
             +KEA E I  + F+P+  +W  LLGAC+ H     G+ AA ++++L+P     Y++LSN
Sbjct: 907  FLKEAEEFIDKLNFEPNAMIWATLLGACRIHGDDIRGRRAAEKLIELEPENSSPYVLLSN 966

Query: 525  IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
            IYAA G W+E    R+ MR  G +K  G SWI V  K   F+A DK       ++ +L+ 
Sbjct: 967  IYAASGNWDEVNSVRRAMREKGLRKLPGCSWIVVGQKTNLFVAGDKFHPSAGEIHALLKD 1026

Query: 585  LIRHMNETAYEPDIDCLIHD 604
            LI  M E  Y  + D L+ D
Sbjct: 1027 LIALMKEDGYIAETDSLLED 1046



 Score =  248 bits (634), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 166/546 (30%), Positives = 273/546 (50%), Gaps = 45/546 (8%)

Query: 60  GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119
           G +++A  LF +MP  +VV+W VMI+G+    C  +A   F  M +  V     TL SVL
Sbjct: 297 GRLDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVL 356

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179
            A   +++L+   LVH  AIK+GL  ++YV +SL+++YA  C  M+ A+ VF+ +  +N 
Sbjct: 357 SAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAK-CEKMEAAKKVFDALDERNL 415

Query: 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAA 239
           V W  ++ GYA +G     + +F EM   G   + ++++  + ACA    +  G+ +H+ 
Sbjct: 416 VLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSF 475

Query: 240 VIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSEC 298
           +IKH F  NL V N+++DMY +   L +A Q F+ +  +D ++WN II GY ++    E 
Sbjct: 476 IIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEA 535

Query: 299 LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDM 358
            NMF +M  +  +P+  +  SI++ CA L AL  G+QVH  +V+ GL   L   ++LIDM
Sbjct: 536 FNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDM 595

Query: 359 YAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVF 418
           Y KCG I  ++ +FS M  R +V+  +++ GY A     EAI+LF EM   G+ P  I F
Sbjct: 596 YVKCGAIEAARYVFSCMPSRSVVSMNAIIAGY-AQNDLVEAIDLFQEMQNEGLNPSEITF 654

Query: 419 MAVLTACS-----------HAGLVDEGLKY----------FKSMN------------DYN 445
            ++L AC+           H  +   GL Y             MN            ++ 
Sbjct: 655 ASLLDACTGPYKLNLGRQIHCLIQKRGLLYDGDFLGVSLLVMYMNSQRKTDADILFSEFQ 714

Query: 446 VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMP---FKPDESVWGPLLGACKEHRLPNLGK 502
              +  ++  ++    + G  +EA +L + M     +PD++ +  +L AC    L +LG 
Sbjct: 715 YPKSTILWTAIISGHTQNGCSEEALQLYQEMHRNNARPDQATFASVLRACS--ILASLGD 772

Query: 503 LAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKV 562
              +  L     +    +  S +     K  +     ++   MGSK +V +SW      +
Sbjct: 773 GRMIHSLIFHVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDV-ISW---NSMI 828

Query: 563 CGFIAN 568
            GF  N
Sbjct: 829 VGFAKN 834



 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 127/445 (28%), Positives = 239/445 (53%), Gaps = 5/445 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + ++LI  Y     +E A+ +FD + ER++V W  M+ GY      ++   +F EM    
Sbjct: 386 VGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCG 445

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
             P+ FT +S+L AC  ++ L     +H   IK   E +++VEN+L+D+YA C  +++ A
Sbjct: 446 FWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCG-ALEEA 504

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R  F  ++ +++VSW  +I GY    +      +F+ M+L+G+  +  S +  +  CA+ 
Sbjct: 505 RQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANL 564

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  G+ +H  ++K G  + L   +S++DMY +   +  A   F  M  + +++ N II
Sbjct: 565 QALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAII 624

Query: 288 AGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL-- 345
           AGY ++   E +++F +M++E  +P+  TF S++ AC     L+ G+Q+H  I +RGL  
Sbjct: 625 AGYAQNDLVEAIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQKRGLLY 684

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           DG+  L  +L+ MY      +D+  +FSE    +  + WT+++ G+  +G  +EA++L+ 
Sbjct: 685 DGDF-LGVSLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGHTQNGCSEEALQLYQ 743

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
           EM ++  RPD+  F +VL ACS    + +G      +    ++ ++     VVD+  + G
Sbjct: 744 EMHRNNARPDQATFASVLRACSILASLGDGRMIHSLIFHVGLDSDELTGSAVVDMYAKCG 803

Query: 465 RVKEAYELIKSMPFKPDESVWGPLL 489
            +K + ++ + M  K D   W  ++
Sbjct: 804 DMKSSVQVFEEMGSKNDVISWNSMI 828



 Score =  218 bits (555), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 122/428 (28%), Positives = 219/428 (51%), Gaps = 37/428 (8%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
           +LI  Y   G + +AR +FD + + D VSWT MIAGY       +A  VF +M +  + P
Sbjct: 222 SLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVP 281

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           +     +V+ AC G+  L                                    D+A  +
Sbjct: 282 DQVAFVTVITACVGLGRL------------------------------------DDACDL 305

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F  M   N V+W  +I+G+   G     +  FK M   GV+    +    + A AS   +
Sbjct: 306 FVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEAL 365

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
           ++G L+HA  IK G  SN+ V +S+++MY + + +  A + FD + E++L+ WN ++ GY
Sbjct: 366 NYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGY 425

Query: 291 EKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
            ++G +S+ + +FS+M+   F P+ FT+TSI++ACA L  L  G+Q+H+ I++   + NL
Sbjct: 426 AQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNL 485

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
            + N L+DMYAKCG + ++++ F  + +RD V+W ++++GY       EA  +F  M+  
Sbjct: 486 FVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILD 545

Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
           G+ PD +   ++L+ C++   +++G +    +    +         ++D+  + G ++ A
Sbjct: 546 GIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAA 605

Query: 470 YELIKSMP 477
             +   MP
Sbjct: 606 RYVFSCMP 613



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 129/487 (26%), Positives = 235/487 (48%), Gaps = 41/487 (8%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L + ++  Y   G +E A   F+++ +RD+++W  +++ Y+      Q    F  +    
Sbjct: 118 LGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGSLEQVIWCFGSLQNCG 177

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V+PN FT + VL +C  +  +     VH   IK G E + + E SL+D+Y+ C  S+ +A
Sbjct: 178 VSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCG-SLVDA 236

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R +F+ +   + VSWT +I GY   G     L VF++M   G+  +  +F   + AC   
Sbjct: 237 RKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGL 296

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
           G                                R D   DA   F +M   +++ WN +I
Sbjct: 297 G--------------------------------RLD---DACDLFVQMPNTNVVAWNVMI 321

Query: 288 AGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           +G+ K G   E ++ F  M          T  S+++A A+L AL+ G  VHA  +++GL+
Sbjct: 322 SGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLN 381

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            N+ + ++LI+MYAKC  +  ++K+F  + +R+LV W +M+ GY  +G+  + ++LF EM
Sbjct: 382 SNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEM 441

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
              G  PD   + ++L+AC+    ++ G +    +  +N   N  +   +VD+  + G +
Sbjct: 442 RGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGAL 501

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD-LKPNMMGTYIILS-- 523
           +EA +  + +  + + S    ++G  +E        +    +LD + P+ +    ILS  
Sbjct: 502 EEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGC 561

Query: 524 -NIYAAE 529
            N+ A E
Sbjct: 562 ANLQALE 568



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 114/370 (30%), Positives = 190/370 (51%), Gaps = 27/370 (7%)

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
           K IHA  +K GFGS   + ++I+D+Y +   +  A + F+++ ++D++ WN++++ Y + 
Sbjct: 101 KTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQ 160

Query: 294 GSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
           GS E  +  F  +++   SPN FT+  ++++CA L  +  G+QVH G+++ G + N    
Sbjct: 161 GSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCE 220

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
            +LIDMY+KCG++ D++KIF  + D D V+WT+M+ GY   G  +EA+++F++M K G+ 
Sbjct: 221 GSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLV 280

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP-NKEIYGCVVDLLGRAGRVKEAYE 471
           PD++ F+ V+TAC   G +D+    F  M + NV   N  I G V     + G   EA +
Sbjct: 281 PDQVAFVTVITACVGLGRLDDACDLFVQMPNTNVVAWNVMISGHV-----KRGCDIEAID 335

Query: 472 LIKSM---PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA 528
             K+M     K   S  G +L A       N G L   + +    N        SN+Y  
Sbjct: 336 FFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLN--------SNVYVG 387

Query: 529 EGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM-LIR 587
                 +AK  K    M + K+V     +  D+    + N  +G + Q  Y    M L  
Sbjct: 388 SSLINMYAKCEK----MEAAKKV----FDALDERNLVLWNAMLGGYAQNGYASKVMKLFS 439

Query: 588 HMNETAYEPD 597
            M    + PD
Sbjct: 440 EMRGCGFWPD 449


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 202/633 (31%), Positives = 326/633 (51%), Gaps = 74/633 (11%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF--- 100
           G + L   L+ +Y   G + +AR +FDE+P R+  S+  +++ Y      ++A  +F   
Sbjct: 50  GETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSAYARLGRPDEARALFEAI 109

Query: 101 ------------------------------VEMVRNEVNPNAFTLSSVLKACKGMKSLSN 130
                                           M  ++   NA++ +S L AC   K    
Sbjct: 110 PDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFASALSACAAEKDSRT 169

Query: 131 AALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYA 190
              VHG+  +      +++ ++L+D+YA C    D AR VF+ M  +N VSW +LIT Y 
Sbjct: 170 GEQVHGLVARSPHADDVHIRSALVDMYAKCERPED-ARRVFDAMPERNVVSWNSLITCYE 228

Query: 191 HSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIK-HGFGSNL 249
            +G     L +F EM+  G   +  + S  + ACA       G+ +HA ++K      ++
Sbjct: 229 QNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDM 288

Query: 250 PVMNSILDMY----------CRFDCL---------------------SDANQYFDEMTEK 278
            + N+++DMY          C FD +                      DA   F +M EK
Sbjct: 289 VLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEK 348

Query: 279 DLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
           ++I WN +IA Y ++G  E  + +F ++K +   P  +T+ +++ AC  +A L  GQQ H
Sbjct: 349 NVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQAH 408

Query: 338 AGIVRRGL------DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG 391
             +++ G       + ++ + N+L+DMY K G+I D  K+F  M+ RD V+W +M++GY 
Sbjct: 409 VHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYA 468

Query: 392 AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNK 450
            +G  K+A+ LF+ M+ S   PD +  + VL+AC H+GLVDEG +YF SM  D+ + P++
Sbjct: 469 QNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRYFHSMTEDHGITPSR 528

Query: 451 EIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD 510
           + Y C+VDLLGRAG +KEA ELI  MP +PD  +W  LLGAC+ H+   LG+  A R+ +
Sbjct: 529 DHYTCMVDLLGRAGHLKEAEELINDMPMEPDSVLWASLLGACRLHKNVELGEWTAGRLFE 588

Query: 511 LKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDK 570
           L P   G Y++LSN+YA  GKW E  + R+ M+  G  K+ G SWIE+  K+  F+A DK
Sbjct: 589 LDPQNSGPYVLLSNMYAEMGKWAEVFRVRRSMKDRGVSKQPGCSWIEIGRKMNVFLARDK 648

Query: 571 MGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIH 603
                  ++  L ++   M  T+ +   D L++
Sbjct: 649 RHPCRNEIHNTLRIIQMEMGRTSIDEIDDGLMN 681



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 140/299 (46%), Gaps = 35/299 (11%)

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           +S  +  HA ++K        ++N+++  Y R   L DA + FDE+  ++  ++N +++ 
Sbjct: 33  LSGARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSA 92

Query: 290 YEKSG----------------------------------SSECLNMFSKMKSERFSPNCF 315
           Y + G                                  +++ L   + M ++ F  N +
Sbjct: 93  YARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAY 152

Query: 316 TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEM 375
           +F S ++ACA       G+QVH  + R     ++ + +AL+DMYAKC    D++++F  M
Sbjct: 153 SFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAM 212

Query: 376 SDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGL 435
            +R++V+W S++  Y  +G   EA+ LF EM+ +G  PD +   +V++AC+      EG 
Sbjct: 213 PERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGR 272

Query: 436 KYFKSMNDYN-VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACK 493
           +    M   + +  +  +   +VD+  + GR  EA  +  SMP +   S    L G  K
Sbjct: 273 QVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAK 331



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 125/257 (48%), Gaps = 9/257 (3%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P    +  T+++  Y     +E+A+ +F +M E++V++W V+IA Y       +A  +F
Sbjct: 314 MPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLF 373

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGL------EGSIYVENSLM 154
           V++ R+ + P  +T  +VL AC  +  L      H   +KEG       E  ++V NSL+
Sbjct: 374 VQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLV 433

Query: 155 DVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP 214
           D+Y     S+D+   VF  M  +++VSW  +I GYA +G     L +F+ ML      + 
Sbjct: 434 DMYLKTG-SIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDS 492

Query: 215 YSFSIAVRACASTGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFD 273
            +    + AC  +G V  G +  H+    HG   +      ++D+  R   L +A +  +
Sbjct: 493 VTMIGVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIN 552

Query: 274 EMT-EKDLITWNTIIAG 289
           +M  E D + W +++  
Sbjct: 553 DMPMEPDSVLWASLLGA 569



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 108/256 (42%), Gaps = 22/256 (8%)

Query: 330 LSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIG 389
           LS  +  HA I++  + G   L N L+  YA+ G + D++++F E+  R+  ++ +++  
Sbjct: 33  LSGARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSA 92

Query: 390 YGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL--VDEGLKYFKSM--NDYN 445
           Y   G   EA  LF+ +      PD+  + AV+ A +  G     + L++  +M  +D+ 
Sbjct: 93  YARLGRPDEARALFEAIPD----PDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFV 148

Query: 446 VNP---NKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGK 502
           +N       +  C  +   R G  ++ + L+   P   D  +   L+    +   P    
Sbjct: 149 LNAYSFASALSACAAEKDSRTG--EQVHGLVARSPHADDVHIRSALVDMYAKCERPE--- 203

Query: 503 LAALRVLDLKPNM-MGTYIILSNIYAAEGK-WEEFAKFRKIMRGMGSKKEVGMSWIEVRD 560
             A RV D  P   + ++  L   Y   G   E    F ++M    S  EV +S +    
Sbjct: 204 -DARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVM--- 259

Query: 561 KVCGFIANDKMGSHTQ 576
             C  +A D+ G    
Sbjct: 260 SACAGLAADREGRQVH 275


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 190/506 (37%), Positives = 301/506 (59%), Gaps = 5/506 (0%)

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
           RN ++ +A  +S  L+ C   KSL      HG+AI  GL       N L+++Y T C   
Sbjct: 52  RNLIDVSA--ISQRLQLCAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLY-TKCGRN 108

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           D ARLVF+ M  ++ VSW T+I GY HSG     L +F  M  EG  M+ ++ S  + AC
Sbjct: 109 DCARLVFDIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICAC 168

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           A+   ++  K +H   +K    SN  V  +ILD+Y + + + DA   F++M E+ L+TW+
Sbjct: 169 AAKYAINECKQLHTIALKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWS 228

Query: 285 TIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           ++ AGY ++G   E L++F   + E      FT ++I++ACA+LA    G Q+HA I++ 
Sbjct: 229 SLFAGYVQNGLHEEALHLFRCAQREGVELTEFTLSAILSACASLALKIEGIQLHAVILKC 288

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G  GN  +A +L+D+YA+CG I  +  +F+ M  +++V W +M+  +  H H  EA+ LF
Sbjct: 289 GFHGNFFVAASLVDVYARCGQIEKAYALFAYMEHKNVVIWNAMIASFSRHAHSWEAMILF 348

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS-MNDYNVNPNKEIYGCVVDLLGR 462
           ++M + G+ P+ + +++VL+ CSHAGLV++G  YF   M+D  V PN   Y C+VD+LGR
Sbjct: 349 EKMQQLGIFPNEVTYLSVLSVCSHAGLVEKGRHYFSLLMSDRTVEPNVLHYSCMVDVLGR 408

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           +G+  EA+EL+  MPF+P  S+WG LLG+C+ +    L ++AA ++  L+P+  G +++L
Sbjct: 409 SGKTDEAWELLNKMPFEPTASMWGSLLGSCRNYNNIRLARIAAEQLFQLEPDNGGNHVLL 468

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           SN+YAA G WE     RK ++  G+KKE+G SWIE + KV  F+  ++       +Y  L
Sbjct: 469 SNVYAASGNWENVLMARKYLKDSGAKKEMGRSWIEAKGKVHVFVVGERKHPRITDIYNKL 528

Query: 583 EMLIRHMNETAYEPDIDCLIHDLEGE 608
           E +   M + A    I+C +HD+  E
Sbjct: 529 EEIYHEMRKFARRTSIECDLHDVHAE 554



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 170/326 (52%), Gaps = 3/326 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y   G  + AR +FD M  R +VSW  MIAGYT      QA  +F  M R   + +
Sbjct: 98  LINLYTKCGRNDCARLVFDIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMS 157

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
            FTLSS + AC    +++    +H +A+K  L+ + +V  +++DVYA C +  D A  VF
Sbjct: 158 EFTLSSTICACAAKYAINECKQLHTIALKLALDSNSFVGTAILDVYAKCNMIKD-ACWVF 216

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
             M  +  V+W++L  GY  +G     L +F+    EGVE+  ++ S  + ACAS     
Sbjct: 217 EKMPERTLVTWSSLFAGYVQNGLHEEALHLFRCAQREGVELTEFTLSAILSACASLALKI 276

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            G  +HA ++K GF  N  V  S++D+Y R   +  A   F  M  K+++ WN +IA + 
Sbjct: 277 EGIQLHAVILKCGFHGNFFVAASLVDVYARCGQIEKAYALFAYMEHKNVVIWNAMIASFS 336

Query: 292 KSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR-RGLDGNL 349
           +   S E + +F KM+     PN  T+ S+++ C+    +  G+   + ++  R ++ N+
Sbjct: 337 RHAHSWEAMILFEKMQQLGIFPNEVTYLSVLSVCSHAGLVEKGRHYFSLLMSDRTVEPNV 396

Query: 350 ALANALIDMYAKCGNISDSQKIFSEM 375
              + ++D+  + G   ++ ++ ++M
Sbjct: 397 LHYSCMVDVLGRSGKTDEAWELLNKM 422



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 110/220 (50%), Gaps = 6/220 (2%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S + T ++  Y    +I++A  +F++MPER +V+W+ + AGY     H +A  +F    R
Sbjct: 193 SFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEALHLFRCAQR 252

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             V    FTLS++L AC  +        +H + +K G  G+ +V  SL+DVYA C   ++
Sbjct: 253 EGVELTEFTLSAILSACASLALKIEGIQLHAVILKCGFHGNFFVAASLVDVYARCG-QIE 311

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A  +F  M+ KN V W  +I  ++   + +  + +F++M   G+  N  ++   +  C+
Sbjct: 312 KAYALFAYMEHKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLGIFPNEVTYLSVLSVCS 371

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCL 265
             G V  G+   + ++     S+  V  ++L   C  D L
Sbjct: 372 HAGLVEKGRHYFSLLM-----SDRTVEPNVLHYSCMVDVL 406



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAW---TVF 100
           G   +A +L+  Y   G IE+A  LF  M  ++VV W  MIA   SF+ H  +W    +F
Sbjct: 292 GNFFVAASLVDVYARCGQIEKAYALFAYMEHKNVVIWNAMIA---SFSRHAHSWEAMILF 348

Query: 101 VEMVRNEVNPNAFTLSSVLKAC 122
            +M +  + PN  T  SVL  C
Sbjct: 349 EKMQQLGIFPNEVTYLSVLSVC 370


>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g15510, chloroplastic; Flags: Precursor
 gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
 gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
 gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 866

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 203/543 (37%), Positives = 309/543 (56%), Gaps = 4/543 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y   G ++ AR LFD MP RD++SW  MI+GY      ++   +F  M    V+P+
Sbjct: 237 LITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPD 296

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
             TL+SV+ AC+ +        +H   I  G    I V NSL  +Y     S   A  +F
Sbjct: 297 LMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAG-SWREAEKLF 355

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           + M+ K+ VSWTT+I+GY ++      +  ++ M  + V+ +  + +  + ACA+ G + 
Sbjct: 356 SRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLD 415

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            G  +H   IK    S + V N++++MY +  C+  A   F  +  K++I+W +IIAG  
Sbjct: 416 TGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLR 475

Query: 292 KSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
            +    E L    +MK     PN  T T+ +AACA + AL CG+++HA ++R G+  +  
Sbjct: 476 LNNRCFEALIFLRQMKMT-LQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDF 534

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           L NAL+DMY +CG ++ +   F+    +D+ +W  ++ GY   G G   +ELFD MVKS 
Sbjct: 535 LPNALLDMYVRCGRMNTAWSQFNS-QKKDVTSWNILLTGYSERGQGSMVVELFDRMVKSR 593

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470
           VRPD I F+++L  CS + +V +GL YF  M DY V PN + Y CVVDLLGRAG ++EA+
Sbjct: 594 VRPDEITFISLLCGCSKSQMVRQGLMYFSKMEDYGVTPNLKHYACVVDLLGRAGELQEAH 653

Query: 471 ELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEG 530
           + I+ MP  PD +VWG LL AC+ H   +LG+L+A  + +L    +G YI+L N+YA  G
Sbjct: 654 KFIQKMPVTPDPAVWGALLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCG 713

Query: 531 KWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMN 590
           KW E AK R++M+  G   + G SW+EV+ KV  F+++DK    T+ +  VLE     M+
Sbjct: 714 KWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLEGFYEKMS 773

Query: 591 ETA 593
           E  
Sbjct: 774 EVG 776



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 127/450 (28%), Positives = 227/450 (50%), Gaps = 6/450 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV-RN 106
           L    +  +   G + +A  +F +M ER++ SW V++ GY      ++A  ++  M+   
Sbjct: 131 LGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVG 190

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V P+ +T   VL+ C G+  L+    VH   ++ G E  I V N+L+ +Y  C   + +
Sbjct: 191 GVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCG-DVKS 249

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           ARL+F+ M  ++ +SW  +I+GY  +G  + GL +F  M    V+ +  + +  + AC  
Sbjct: 250 ARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACEL 309

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G    G+ IHA VI  GF  ++ V NS+  MY       +A + F  M  KD+++W T+
Sbjct: 310 LGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTM 369

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+GYE +    + ++ +  M  +   P+  T  ++++ACATL  L  G ++H   ++  L
Sbjct: 370 ISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARL 429

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
              + +AN LI+MY+KC  I  +  IF  +  +++++WTS++ G   +    EA+ +F  
Sbjct: 430 ISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEAL-IFLR 488

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
            +K  ++P+ I   A L AC+  G +  G +    +    V  +  +   ++D+  R GR
Sbjct: 489 QMKMTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGR 548

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           +  A+    S   K D + W  LL    E 
Sbjct: 549 MNTAWSQFNSQ--KKDVTSWNILLTGYSER 576



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 187/341 (54%), Gaps = 5/341 (1%)

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
           ++ +R  V+ + F   ++++ C+  ++    + V+ +A+       + + N+ + ++   
Sbjct: 85  MQELRVAVDEDVFV--ALVRLCEWKRAQEEGSKVYSIALSSMSSLGVELGNAFLAMFVRF 142

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEML-LEGVEMNPYSFSI 219
              +D A  VF  M  +N  SW  L+ GYA  G     + ++  ML + GV+ + Y+F  
Sbjct: 143 GNLVD-AWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPC 201

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
            +R C     ++ GK +H  V+++G+  ++ V+N+++ MY +   +  A   FD M  +D
Sbjct: 202 VLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRD 261

Query: 280 LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           +I+WN +I+GY ++G   E L +F  M+     P+  T TS+I+AC  L     G+ +HA
Sbjct: 262 IISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHA 321

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
            ++  G   ++++ N+L  MY   G+  +++K+FS M  +D+V+WT+M+ GY  +    +
Sbjct: 322 YVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDK 381

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439
           AI+ +  M +  V+PD I   AVL+AC+  G +D G++  K
Sbjct: 382 AIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHK 422



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 179/343 (52%), Gaps = 7/343 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +  +L + Y + G   EA  LF  M  +D+VSWT MI+GY      ++A   +  M ++ 
Sbjct: 334 VCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDS 393

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDN 166
           V P+  T+++VL AC  +  L     +H +AIK  L   + V N+L+++Y+ C CI  D 
Sbjct: 394 VKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCI--DK 451

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  +F+++  KN +SWT++I G   +   +  L   ++M +  ++ N  + + A+ ACA 
Sbjct: 452 ALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQMKMT-LQPNAITLTAALAACAR 510

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G +  GK IHA V++ G G +  + N++LDMY R   ++ A   F+   +KD+ +WN +
Sbjct: 511 IGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFNS-QKKDVTSWNIL 569

Query: 287 IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           + GY + G  S  + +F +M   R  P+  TF S++  C+    +  G    + +   G+
Sbjct: 570 LTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKMEDYGV 629

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMM 387
             NL     ++D+  + G + ++ K   +M    D   W +++
Sbjct: 630 TPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALL 672



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 151/312 (48%), Gaps = 7/312 (2%)

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
           F   VR C        G  +++  +       + + N+ L M+ RF  L DA   F +M+
Sbjct: 97  FVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVELGNAFLAMFVRFGNLVDAWYVFGKMS 156

Query: 277 EKDLITWNTIIAGYEKSGS-SECLNMFSKMK-SERFSPNCFTFTSIIAACATLAALSCGQ 334
           E++L +WN ++ GY K G   E + ++ +M       P+ +TF  ++  C  +  L+ G+
Sbjct: 157 ERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGK 216

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
           +VH  +VR G + ++ + NALI MY KCG++  ++ +F  M  RD+++W +M+ GY  +G
Sbjct: 217 EVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENG 276

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG 454
              E +ELF  M    V PD +   +V++AC   G    G      +       +  +  
Sbjct: 277 MCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCN 336

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD---L 511
            +  +   AG  +EA +L   M  + D   W  ++   + + LP+   +   R++D   +
Sbjct: 337 SLTQMYLNAGSWREAEKLFSRME-RKDIVSWTTMISGYEYNFLPD-KAIDTYRMMDQDSV 394

Query: 512 KPNMMGTYIILS 523
           KP+ +    +LS
Sbjct: 395 KPDEITVAAVLS 406



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 121/242 (50%), Gaps = 4/242 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I+A NLI  Y     I++A  +F  +P ++V+SWT +IAG    N   +A  +F+  ++ 
Sbjct: 434 IVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEA-LIFLRQMKM 492

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + PNA TL++ L AC  + +L     +H   ++ G+    ++ N+L+D+Y  C   M+ 
Sbjct: 493 TLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCG-RMNT 551

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A   FN  K K+  SW  L+TGY+  G G   + +F  M+   V  +  +F   +  C+ 
Sbjct: 552 AWSQFNSQK-KDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSK 610

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLITWNT 285
           +  V  G +  + +  +G   NL     ++D+  R   L +A+++  +M    D   W  
Sbjct: 611 SQMVRQGLMYFSKMEDYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGA 670

Query: 286 II 287
           ++
Sbjct: 671 LL 672



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 107/234 (45%), Gaps = 12/234 (5%)

Query: 297 ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALI 356
           E + + + M+  R + +   F +++  C    A   G +V++  +       + L NA +
Sbjct: 77  EAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVELGNAFL 136

Query: 357 DMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV-KSGVRPDR 415
            M+ + GN+ D+  +F +MS+R+L +W  ++ GY   G+  EA+ L+  M+   GV+PD 
Sbjct: 137 AMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDV 196

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKS 475
             F  VL  C     +  G +    +  Y    + ++   ++ +  + G VK A  L   
Sbjct: 197 YTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDR 256

Query: 476 MPFKPDESVWGPLL------GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           MP + D   W  ++      G C E     L    A+R L + P++M    ++S
Sbjct: 257 MP-RRDIISWNAMISGYFENGMCHE----GLELFFAMRGLSVDPDLMTLTSVIS 305


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 203/580 (35%), Positives = 325/580 (56%), Gaps = 23/580 (3%)

Query: 45  PSILATNLIKSYFDEGLIEEARTLFD----------EMPERDVVSWTVMIAGYTSFNCHN 94
           P  LA  LI  Y   G +  ARTLFD          + P   + +   M+  Y +     
Sbjct: 58  PHFLA-RLIILYSKLGDLHSARTLFDHRHHHHHGHTQAPNSFLCN--TMLRAYANAGRSY 114

Query: 95  QAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLM 154
           +A  +++ M R  V  N FT   VLK C          +VHG  ++ G    ++VE +L+
Sbjct: 115 EAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALV 174

Query: 155 DVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP 214
           D+YA C   + +A  VF+ M  ++ V WT +IT Y  +      L +F++M  EG   + 
Sbjct: 175 DMYAKCG-EIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDE 233

Query: 215 YSFSIAVRACASTGWVSFGKL---IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQY 271
            +   A+   ++ G +  G++   +H   + +GF  ++ V NSI+ MY +   +  A   
Sbjct: 234 IT---AISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLV 290

Query: 272 FDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAAL 330
           FD M E++ I+WN++++GY ++G  ++ L++F++M++    PN  T   +++AC+ L + 
Sbjct: 291 FDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSK 350

Query: 331 SCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFS--EMSDRDLVTWTSMMI 388
             G+++H  ++   +D +  L NA++DMY KCG++  + ++F+  E+ +RD+ +W  ++ 
Sbjct: 351 HLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLIS 410

Query: 389 GYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP 448
           GYG HGHGKEA+ELF  M   GV P+ I F ++L+ACSHAGL+DEG K F  M   +V P
Sbjct: 411 GYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKLSVRP 470

Query: 449 NKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRV 508
             + Y C+VD+LGRAG + EA+ LIK +P +P + VWG LL AC+ H    LG++AA  +
Sbjct: 471 EMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNL 530

Query: 509 LDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIAN 568
             L+P   G Y+++SNIYAA  KW+E    R+ M+  G KK    S IE   +V GF   
Sbjct: 531 FQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTA 590

Query: 569 DKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           D+   + + VY  +E L   M    Y PD+ C++HD+E E
Sbjct: 591 DQSSPYYREVYRKVESLAIEMKMVGYVPDLSCVLHDVEPE 630



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 127/258 (49%), Gaps = 6/258 (2%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   +  +++  Y   G +E AR +FD M ER+ +SW  M++GYT       A ++F +M
Sbjct: 266 GDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQM 325

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
             +E +PN  T   ++ AC  + S      +H   I   ++    + N++MD+Y  C   
Sbjct: 326 QASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCG-D 384

Query: 164 MDNARLVFNDMKW-KNDV-SWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
           +D A  +FN+ +  + DV SW  LI+GY   G+G   L +F  M +EGVE N  +F+  +
Sbjct: 385 LDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSIL 444

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK--D 279
            AC+  G +  G+   A + K      +     ++DM  R   L++A +   ++  +  D
Sbjct: 445 SACSHAGLIDEGRKCFADMTKLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSD 504

Query: 280 LITWNTIIAGYEKSGSSE 297
            + W  ++      G++E
Sbjct: 505 EV-WGALLLACRIHGNTE 521


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 204/596 (34%), Positives = 328/596 (55%), Gaps = 36/596 (6%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++  +++  +FD   +  A ++FD + E +++ W  M  G+   +    A  ++V M+  
Sbjct: 40  LIEFSVLSPHFDG--LTYAISVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISL 97

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA-------- 158
            + PN++T   +LKAC   K+      +HG  +K G +  +YV  SL+ +Y         
Sbjct: 98  GLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDA 157

Query: 159 ---------------TCCIS-------MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGY 196
                          T  I        + +A+ +F+++  K+ VSW  LI+GYA +GN  
Sbjct: 158 RKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYK 217

Query: 197 GGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSIL 256
             L +FKEM+   V+ +  +    + ACA +  +  G+ +H+ +  HGFGSNL ++N+++
Sbjct: 218 EALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALI 277

Query: 257 DMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCF 315
           D+Y +   +  A+  F+ ++ KD+I+WNT+I GY       E L +F +M     SPN  
Sbjct: 278 DLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEV 337

Query: 316 TFTSIIAACATLAALSCGQQVHAGIVRR--GLDGNLALANALIDMYAKCGNISDSQKIFS 373
           T  SI+ ACA L A+  G+ +H  I +R  G+    +L  +LIDMYAKCG+I  +Q++F 
Sbjct: 338 TMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFD 397

Query: 374 EMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDE 433
            M +R L +W +M+ G+  HG    A ++F  M K G+ PD I F+ +L+ACSH+G++D 
Sbjct: 398 SMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDL 457

Query: 434 GLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGAC 492
           G   F+SM  DY + P  E YGC++DLLG +G  KEA E+I SM   PD  +W  LL AC
Sbjct: 458 GRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKAC 517

Query: 493 KEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVG 552
           K H    LG+  A  ++ ++P   G+Y++LSNIYA  G+W E AK R ++   G KK  G
Sbjct: 518 KMHGNVELGESFAQNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPG 577

Query: 553 MSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
            S IE+   V  FI  DK+    + +YG+LE +   + E  + PD   ++ ++E E
Sbjct: 578 CSSIEIDSVVHEFIIGDKLHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEE 633



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 41/78 (52%)

Query: 45  PSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
           PS L T+LI  Y   G IE A+ +FD M  R + SW  MI G+      N A+ +F  M 
Sbjct: 372 PSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMR 431

Query: 105 RNEVNPNAFTLSSVLKAC 122
           ++ + P+  T   +L AC
Sbjct: 432 KDGIEPDDITFVGLLSAC 449


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 183/482 (37%), Positives = 292/482 (60%), Gaps = 11/482 (2%)

Query: 134 VHGMAIKEGLEGSIYVENSLMDVYA-----TCCISMDNARLVFNDMKWKNDVSWTTLITG 188
           +H  +I+ G    + + N  M  Y      + C  M  A  +F+ ++  N  +W T+I G
Sbjct: 59  IHAFSIRHG----VPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRG 114

Query: 189 YAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSN 248
           YA S N    L ++++M +  +E + +++   ++A A    V  G+ +H+  I++GF S 
Sbjct: 115 YAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESL 174

Query: 249 LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKS 307
           + V N+++ MY        A++ F+ M E++L+TWN++I GY  +G  +E L +F +M  
Sbjct: 175 VFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGL 234

Query: 308 ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISD 367
               P+ FT  S+++ACA L AL+ G++ H  +V+ GLDGNL   NAL+D+YAKCG+I  
Sbjct: 235 RGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQ 294

Query: 368 SQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH 427
           + K+F EM ++ +V+WTS+++G   +G GKEA+ELF E+ + G+ P  I F+ VL ACSH
Sbjct: 295 AHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSH 354

Query: 428 AGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWG 486
            G+VDEG  YFK M  +Y + P  E YGC+VDLLGRAG VK+A+E I++MP +P+  VW 
Sbjct: 355 CGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWR 414

Query: 487 PLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546
            LLGAC  H    LG++A  ++L L+P   G Y++LSN+YA+E +W +  K R+ M   G
Sbjct: 415 TLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREG 474

Query: 547 SKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
            KK  G S +E+R+++  F+  D+    T+ +Y  L  + + +    Y P I  ++ D+E
Sbjct: 475 VKKTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITKLLKLEGYVPHISNVLADIE 534

Query: 607 GE 608
            E
Sbjct: 535 EE 536



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 168/345 (48%), Gaps = 26/345 (7%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           A  +F ++   ++ +W  MI GY        A  ++ +M  + + P+  T   +LKA   
Sbjct: 93  AHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAK 152

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTT 184
           +  +     VH +AI+ G E  ++V+N+L+ +YA C    ++A  +F  M  +N V+W +
Sbjct: 153 LMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACG-HAESAHKLFELMAERNLVTWNS 211

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG 244
           +I GYA +G     L +F+EM L GVE + ++    + ACA  G ++ G+  H  ++K G
Sbjct: 212 VINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVG 271

Query: 245 FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFS 303
              NL   N++LD+Y +   +  A++ FDEM EK +++W ++I G   +G   E L +F 
Sbjct: 272 LDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFK 331

Query: 304 KMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD------------GNLAL 351
           +++ +   P+  TF  ++ AC+           H G+V  G D              +  
Sbjct: 332 ELERKGLMPSEITFVGVLYACS-----------HCGMVDEGFDYFKRMKEEYGIVPKIEH 380

Query: 352 ANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGH 395
              ++D+  + G +  + +    M    + V W +++     HGH
Sbjct: 381 YGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGH 425



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 128/245 (52%), Gaps = 3/245 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            +   L+  Y   G  E A  LF+ M ER++V+W  +I GY      N+A T+F EM   
Sbjct: 176 FVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLR 235

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V P+ FT+ S+L AC  + +L+     H   +K GL+G+++  N+L+D+YA C  S+  
Sbjct: 236 GVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCG-SIRQ 294

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  VF++M+ K+ VSWT+LI G A +G G   L +FKE+  +G+  +  +F   + AC+ 
Sbjct: 295 AHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSH 354

Query: 227 TGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLITWN 284
            G V  G         ++G    +     ++D+  R   +  A+++   M  + + + W 
Sbjct: 355 CGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWR 414

Query: 285 TIIAG 289
           T++  
Sbjct: 415 TLLGA 419


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 192/596 (32%), Positives = 332/596 (55%), Gaps = 35/596 (5%)

Query: 45  PSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           P++   N L+ +     L+++  +LF  M +RD VS+  +IAG++    H +A  ++  +
Sbjct: 70  PNLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTL 129

Query: 104 VR--NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC- 160
           +R  + V P+  T+S+++ A   +   +     H   ++ G   + +V + L+ +YA   
Sbjct: 130 LRAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMG 189

Query: 161 -----------------------------CISMDNARLVFNDMKWKNDVSWTTLITGYAH 191
                                        C  ++ AR +F  M  ++ ++WTT++TG+  
Sbjct: 190 LIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQ 249

Query: 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251
           +G     L  F+ M  +G+ ++ Y+F   + AC +   +  GK IHA +I+  +  N+ V
Sbjct: 250 NGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFV 309

Query: 252 MNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERF 310
            ++++DMY +   +  A   F  M+ K++I+W  +I GY ++G S E + +FS+M+ +  
Sbjct: 310 GSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGI 369

Query: 311 SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQK 370
            P+ FT  S+I++CA LA+L  G Q H   +  GL   + ++NAL+ +Y KCG+I D+ +
Sbjct: 370 DPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHR 429

Query: 371 IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           +F EM   D V+WT+++ GY   G  KE I+LF++M+   V+PD + F+ VL+ACS AG 
Sbjct: 430 LFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGF 489

Query: 431 VDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           V++G  YF SM  D+ + P  + Y C++DL  R+GR+KEA E IK MP  PD   WG LL
Sbjct: 490 VEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLL 549

Query: 490 GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKK 549
            AC+      +G+ AA  +L++ P    +Y++L +++A +G W + A+ R+ MR    KK
Sbjct: 550 SACRLRGDMEIGQWAAENLLEIDPQNPASYVLLCSMHATKGNWNQVAQLRRGMRDRQVKK 609

Query: 550 EVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDL 605
           E G SWI+ ++KV  F A+D+    ++ +Y  LE L   M E  Y+PD+  ++HD+
Sbjct: 610 EPGCSWIKYKNKVHIFSADDQSHPFSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDV 665


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 201/565 (35%), Positives = 331/565 (58%), Gaps = 5/565 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            +A  LI  Y   G + EA  +F  M + D +SW  M++G+     +++A   + EM   
Sbjct: 318 FVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDA 377

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
              P+   + S++ A     +  +   +H  A+K GL+  + V NSL+D+YA  C SM  
Sbjct: 378 GQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFC-SMKY 436

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
              +F+ M  K+ VSWTT+I G+A +G+    L +F+E+ LEG++++    S  + AC+ 
Sbjct: 437 MDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSG 496

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +S  K IH+ +I+ G  S+L + N I+D+Y     +  A + F+ +  KD+++W ++
Sbjct: 497 LKLISSVKEIHSYIIRKGL-SDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSM 555

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+ Y  +G ++E L +F  MK     P+  +  SI++A A+L+AL  G+++H  ++R+G 
Sbjct: 556 ISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGF 615

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
               +LA+ L+DMYA+CG +  S+ +F+ + ++DLV WTSM+  YG HG G+ AI+LF  
Sbjct: 616 VLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRR 675

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAG 464
           M    + PD I F+AVL ACSH+GL++EG ++ +SM  +Y + P  E Y C+VDLLGRA 
Sbjct: 676 MEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRAN 735

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
            ++EAY+ +K M  +P   VW  LLGAC+ H    LG++AA ++L++ P   G Y+++SN
Sbjct: 736 HLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSN 795

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           +Y+AE +W++    R  M+  G KK  G SWIEV +KV  F+A DK    +  +Y  L  
Sbjct: 796 VYSAERRWKDVEXVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQ 855

Query: 585 LIRHM-NETAYEPDIDCLIHDLEGE 608
           +   +  E  Y      ++H+ + E
Sbjct: 856 ITEKLAKEGGYVAQTKFVLHNAKEE 880



 Score =  238 bits (607), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 144/458 (31%), Positives = 242/458 (52%), Gaps = 11/458 (2%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            L+T L+  Y   G + +A  LFD MP + + +W  MI  Y +      +  ++ EM  +
Sbjct: 115 FLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVS 174

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            +  +A T   +LKAC  +K     A VHG+AIKEG    ++V NS++ +Y T C  ++ 
Sbjct: 175 GIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMY-TKCNDLNG 233

Query: 167 ARLVFNDMKWKND-VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           AR +F+ M  K D VSW ++I+ Y+ +G     L +F EM    +  N Y+F  A++AC 
Sbjct: 234 ARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACE 293

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
            + ++  G  IHA V+K  +  N+ V N+++ MY RF  + +A   F  M + D I+WN+
Sbjct: 294 DSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNS 353

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +++G+ ++G   E L  + +M+     P+     SIIAA A       G Q+HA  ++ G
Sbjct: 354 MLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNG 413

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           LD +L + N+L+DMYAK  ++     IF +M D+D+V+WT+++ G+  +G    A+ELF 
Sbjct: 414 LDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFR 473

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE---IYGCVVDLLG 461
           E+   G+  D ++  ++L ACS   L+       K ++ Y +        +   +VD+ G
Sbjct: 474 EVQLEGIDLDVMMISSILLACSGLKLISS----VKEIHSYIIRKGLSDLVLQNGIVDVYG 529

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN 499
             G V  A  + + + FK D   W  ++     + L N
Sbjct: 530 ECGNVDYAARMFELIEFK-DVVSWTSMISCYVHNGLAN 566



 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 145/492 (29%), Positives = 257/492 (52%), Gaps = 38/492 (7%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPER-DVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
            +A +++  Y     +  AR LFD MPE+ DVVSW  MI+ Y+S     +A  +F EM +
Sbjct: 216 FVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQK 275

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             + PN +T  + L+AC+    +     +H   +K     +++V N+L+ +YA      +
Sbjct: 276 ASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGE 335

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A + +N   W + +SW ++++G+  +G  +  L  + EM   G + +  +    + A A
Sbjct: 336 AANIFYNMDDW-DTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASA 394

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
            +G    G  IHA  +K+G  S+L V NS++DMY +F  +   +  FD+M +KD+++W T
Sbjct: 395 RSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTT 454

Query: 286 IIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           IIAG+ ++GS S  L +F +++ E    +    +SI+ AC+ L  +S  +++H+ I+R+G
Sbjct: 455 IIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKG 514

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           L  +L L N ++D+Y +CGN+  + ++F  +  +D+V+WTSM+  Y  +G   EA+ELF 
Sbjct: 515 LS-DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFH 573

Query: 405 EMVKSGVRPDRIVFMAVLTACS-----------HAGLVDEGL------------------ 435
            M ++GV PD I  +++L+A +           H  L+ +G                   
Sbjct: 574 LMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCG 633

Query: 436 KYFKSMNDYNVNPNKE--IYGCVVDLLGRAGRVKEAYELIKSM---PFKPDESVWGPLLG 490
              KS N +N   NK+  ++  +++  G  G  + A +L + M      PD   +  +L 
Sbjct: 634 TLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLY 693

Query: 491 ACKEHRLPNLGK 502
           AC    L N G+
Sbjct: 694 ACSHSGLMNEGR 705



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 123/439 (28%), Positives = 227/439 (51%), Gaps = 14/439 (3%)

Query: 94  NQAWTVFVEMVRNEVNPNAFTL----SSVLKACKGMKSLSNAALVHG-MAIKEGLEGSIY 148
           N+A+    ++  N+ +P+ F+L    SSVL+ C   K+LS    VH  M     L  S++
Sbjct: 57  NEAFQSLTDLFANQ-SPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVF 115

Query: 149 VENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE 208
           +   L+ +Y  C   +D  +L F+ M  K   +W  +I  Y  +G   G L +++EM + 
Sbjct: 116 LSTRLVFMYGKCGCLVDAEKL-FDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVS 174

Query: 209 GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDA 268
           G+ ++  +F   ++AC       +G  +H   IK G+ S + V NSI+ MY + + L+ A
Sbjct: 175 GIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGA 234

Query: 269 NQYFDEMTEK-DLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACAT 326
            Q FD M EK D+++WN++I+ Y  +G S E L +F +M+    +PN +TF + + AC  
Sbjct: 235 RQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACED 294

Query: 327 LAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSM 386
            + +  G  +HA +++     N+ +ANALI MYA+ G + ++  IF  M D D ++W SM
Sbjct: 295 SSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSM 354

Query: 387 MIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV 446
           + G+  +G   EA++ + EM  +G +PD +  ++++ A + +G    G++         +
Sbjct: 355 LSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGL 414

Query: 447 NPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH----RLPNLGK 502
           + + ++   +VD+  +   +K    +   MP K D   W  ++    ++    R   L +
Sbjct: 415 DSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDK-DVVSWTTIIAGHAQNGSHSRALELFR 473

Query: 503 LAALRVLDLKPNMMGTYII 521
              L  +DL   M+ + ++
Sbjct: 474 EVQLEGIDLDVMMISSILL 492



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 111/199 (55%), Gaps = 7/199 (3%)

Query: 40  LIPKGPS--ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAW 97
           +I KG S  +L   ++  Y + G ++ A  +F+ +  +DVVSWT MI+ Y      N+A 
Sbjct: 510 IIRKGLSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEAL 569

Query: 98  TVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG--LEGSIYVENSLMD 155
            +F  M    V P++ +L S+L A   + +L     +HG  I++G  LEGS+   ++L+D
Sbjct: 570 ELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSL--ASTLVD 627

Query: 156 VYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPY 215
           +YA C  +++ +R VFN ++ K+ V WT++I  Y   G G   + +F+ M  E +  +  
Sbjct: 628 MYARCG-TLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHI 686

Query: 216 SFSIAVRACASTGWVSFGK 234
           +F   + AC+ +G ++ G+
Sbjct: 687 AFVAVLYACSHSGLMNEGR 705


>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
          Length = 789

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 200/572 (34%), Positives = 321/572 (56%), Gaps = 35/572 (6%)

Query: 45  PSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           PS+   N +I  Y   G +++A  LF +MPERD VSW  MI+  +      +    F+EM
Sbjct: 178 PSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEM 237

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
                 PN+ T +SVL AC  +  L   A +H   ++      +Y    L+D+YA C   
Sbjct: 238 WNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCG-R 296

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +++AR VF+ +   N VSWT+LI G A +G     L +F +M    V  + ++ +  +  
Sbjct: 297 LESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGV 356

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR----------FDCL-------- 265
           C S   +S G+ +HA  I  G  S++PV N+++ MY +          F+ +        
Sbjct: 357 CLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISW 416

Query: 266 -------------SDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFS 311
                          A +YFD+M E+++I+WN+++A Y + G   E L ++ +M  E   
Sbjct: 417 TAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVK 476

Query: 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKI 371
            +  TF++ I+ACA LA L  G Q+ A   + G   N+++AN+++ MY++CG I ++QK+
Sbjct: 477 TDWITFSTSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKM 536

Query: 372 FSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLV 431
           FS +  ++LV+W +MM GY  +G G++ IE+F++M+  G  PD+I +++VL+ CSH+G V
Sbjct: 537 FSSIVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSGCSHSGFV 596

Query: 432 DEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490
            EG  YF SM  D+ ++P  E + C+VDLLGRAG++++A  LI  MPFKP+ ++WG LL 
Sbjct: 597 SEGQYYFLSMTKDHGISPMSEHFVCMVDLLGRAGQLEQAKNLINQMPFKPNAAIWGALLA 656

Query: 491 ACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKE 550
           AC+ H    L +LA   +L+L     G+Y +L+NIY+  GK +     RK+MR  G +K 
Sbjct: 657 ACRIHGNTKLAELAVKNLLELDAEGPGSYCLLANIYSESGKIQGVTNVRKLMRDKGVRKN 716

Query: 551 VGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
            G SWIEV ++V  F  +D      + V+ +L
Sbjct: 717 PGCSWIEVDNRVHVFTVDDTNHPQIKDVHRML 748



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 130/499 (26%), Positives = 234/499 (46%), Gaps = 87/499 (17%)

Query: 45  PSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           P++ + N +I  + D G + EA  LF++MPERD VSW  M++GY     HN         
Sbjct: 68  PNVYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYF----HNG-------- 115

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
                      L + +KA   +  L  A  +HG A K        VE S++D+Y  C  +
Sbjct: 116 ----------ELEATIKASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCG-A 164

Query: 164 MDNARLVF-----------NDMKW--------------------KNDVSWTTLITGYAHS 192
           MD A+ VF           N M +                    ++ VSW T+I+  +  
Sbjct: 165 MDFAQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQH 224

Query: 193 GNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVM 252
           G G   L  F EM  +G   N  +++  + AC S   + +G  +HA +++     ++   
Sbjct: 225 GFGAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAG 284

Query: 253 NSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFS 311
             ++DMY +   L  A Q FD +TE + ++W ++I G  ++G   E L +F++M+    +
Sbjct: 285 CGLIDMYAKCGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVA 344

Query: 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC--------- 362
            + FT  +++  C +   +S G+Q+HA  + RGLD ++ +ANAL+ MYAKC         
Sbjct: 345 SDQFTLATVLGVCLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHA 404

Query: 363 ----------------------GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
                                 G++  +++ F +M +R++++W SM+  Y   G+ +E +
Sbjct: 405 FELMPIRDIISWTAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGL 464

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLL 460
           +++ +M++ GV+ D I F   ++AC+   ++  G +          + N  +   VV + 
Sbjct: 465 KVYIQMLREGVKTDWITFSTSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMY 524

Query: 461 GRAGRVKEAYELIKSMPFK 479
            R G+++EA ++  S+  K
Sbjct: 525 SRCGQIEEAQKMFSSIVMK 543



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 128/483 (26%), Positives = 220/483 (45%), Gaps = 58/483 (12%)

Query: 119 LKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKN 178
           +K C  ++S+  A  +H   I  GL+ SI+++N L+++Y+ C +  D  R VF  + + N
Sbjct: 11  MKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYR-VFGGIMFPN 69

Query: 179 DVSWTTLITGYAHSGNGYGGLGVFKEM----------LLEGVEMNPYSFSIAVRACASTG 228
             SW T+I+G+A SG       +F++M          ++ G   N       ++A  S G
Sbjct: 70  VYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNG-ELEATIKASGSLG 128

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMY-------------CR-------------- 261
           ++     +H    K  FG +  V  S+LDMY             CR              
Sbjct: 129 YLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIY 188

Query: 262 ----FDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFT 316
               +  +  A + F +M E+D ++WNT+I+   + G  +E LN F +M ++ F PN  T
Sbjct: 189 GYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMT 248

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           + S+++AC ++  L  G  +HA IVR     ++     LIDMYAKCG +  ++++F  ++
Sbjct: 249 YASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGLT 308

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
           + + V+WTS++ G    G  +EA+ LF++M +  V  D+     VL  C     +  G +
Sbjct: 309 EHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQ 368

Query: 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR 496
                    ++ +  +   +V +  + G V +A    + MP + D   W  ++ A     
Sbjct: 369 LHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIR-DIISWTAMITA----- 422

Query: 497 LPNLGKLAALR-VLDLKP--NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGM 553
               G +   R   D  P  N++    +L+  Y   G WEE  K    M   G K +   
Sbjct: 423 FSQAGDVEKAREYFDKMPERNVISWNSMLAT-YMQRGYWEEGLKVYIQMLREGVKTD--- 478

Query: 554 SWI 556
            WI
Sbjct: 479 -WI 480



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 131/260 (50%), Gaps = 3/260 (1%)

Query: 40  LIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTV 99
           L+P    I  T +I ++   G +E+AR  FD+MPER+V+SW  M+A Y       +   V
Sbjct: 407 LMPIRDIISWTAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKV 466

Query: 100 FVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
           +++M+R  V  +  T S+ + AC  +  L     +   A K G   ++ V NS++ +Y+ 
Sbjct: 467 YIQMLREGVKTDWITFSTSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSR 526

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
           C   ++ A+ +F+ +  KN VSW  ++ GYA +G G   + +F++ML  G   +  S+  
Sbjct: 527 CG-QIEEAQKMFSSIVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVS 585

Query: 220 AVRACASTGWVSFGKLIHAAVIK-HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK 278
            +  C+ +G+VS G+    ++ K HG          ++D+  R   L  A    ++M  K
Sbjct: 586 VLSGCSHSGFVSEGQYYFLSMTKDHGISPMSEHFVCMVDLLGRAGQLEQAKNLINQMPFK 645

Query: 279 -DLITWNTIIAGYEKSGSSE 297
            +   W  ++A     G+++
Sbjct: 646 PNAAIWGALLAACRIHGNTK 665



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 146/322 (45%), Gaps = 48/322 (14%)

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
           F  +++ CAS   +   + +HA +I  G  S++ + N +L+MY     +SDA + F  + 
Sbjct: 7   FYESMKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIM 66

Query: 277 EKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTS----------IIAACA 325
             ++ +WNT+I+G+  SG   E   +F KM  ER S +  +  S           I A  
Sbjct: 67  FPNVYSWNTMISGFADSGQMREAEKLFEKMP-ERDSVSWNSMMSGYFHNGELEATIKASG 125

Query: 326 TLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKI-------------- 371
           +L  L    Q+H    +     +  +  +++DMY KCG +  +QK+              
Sbjct: 126 SLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNS 185

Query: 372 -----------------FSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
                            F++M +RD V+W +M+     HG G E +  F EM   G RP+
Sbjct: 186 MIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPN 245

Query: 415 RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIY-GC-VVDLLGRAGRVKEAYEL 472
            + + +VL+AC+    ++ G      +    + P  ++Y GC ++D+  + GR++ A ++
Sbjct: 246 SMTYASVLSACTSIYDLEWGAHLHARI--VRMEPCLDVYAGCGLIDMYAKCGRLESARQV 303

Query: 473 IKSMPFKPDESVWGPLLGACKE 494
              +  + +   W  L+G   +
Sbjct: 304 FDGLT-EHNAVSWTSLIGGVAQ 324


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 194/565 (34%), Positives = 323/565 (57%), Gaps = 3/565 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + + T LI +Y   G +  AR +FD +  +D V+WT M++ Y+  +    A   F +M  
Sbjct: 183 AFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRM 242

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
               PN F L+S LKA   + S      +HG ++K   +   +V  +L+D+YA C   ++
Sbjct: 243 TGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCG-DIE 301

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +A  +F  +   + + W+ LI+ YA S        +F  M+   V  N +S S  ++ACA
Sbjct: 302 DAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACA 361

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           +  ++  G+ IH   IK G+ S L V N+++DMY +   + ++ + F  + + + ++WNT
Sbjct: 362 NIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNT 421

Query: 286 IIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           II GY +SG +E  L++F +M++        TF+S++ ACA  +++    Q+H+ I +  
Sbjct: 422 IIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIEKST 481

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
            + +  + N+LID YAKCG I D+ K+F  + + D+V+W S++  Y  HG    A+ELFD
Sbjct: 482 FNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYALHGRATNALELFD 541

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRA 463
            M KS ++ + + F+++L+ C   GLV++GL  F SM  D+ + P+ E Y C+V LLGRA
Sbjct: 542 RMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEHYTCIVRLLGRA 601

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           GR+ +A + I  +P  P   VW  LL +C  H+   LG+ AA +VLD++P+   TY++LS
Sbjct: 602 GRLTDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGRYAAEKVLDIEPHDETTYVLLS 661

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           N+YAA G  +E A +RK MR +G KKE G+SW+E++ +V  F          + +  +LE
Sbjct: 662 NMYAAAGILDEVALWRKSMRNVGVKKEAGLSWVEIKGEVHAFSVGSADHPDMRIINAMLE 721

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGE 608
            L    +   Y PDI+ ++HD++ E
Sbjct: 722 WLNLKASREGYVPDINVVLHDVDEE 746



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 127/448 (28%), Positives = 235/448 (52%), Gaps = 3/448 (0%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108
           A  L+  Y   G +  AR LFD MPER+ VS+  ++ GY       +A  +F  + R   
Sbjct: 85  ANVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQGYALRGEFEEALELFRRLQREGH 144

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
             N F L+++LK    M +   A  +H  A K G + + +V  +L+D Y+ C  ++ +AR
Sbjct: 145 EVNHFVLTTILKVLVTMDAPGLACGIHACACKLGHDRNAFVGTALIDAYSLCG-AVCHAR 203

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            VF+ +  K+ V+WT +++ Y+ +      L  F +M + G + NP+  + A++A     
Sbjct: 204 CVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLS 263

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
               GK IH   +K  + +   V  ++LDMY +   + DA+  F+ +   D+I W+ +I+
Sbjct: 264 SALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLIS 323

Query: 289 GYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
            Y +S  +E    MF +M      PN F+ + ++ ACA +A L  G+Q+H   ++ G + 
Sbjct: 324 RYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYES 383

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
            L + NAL+DMYAKC N+ +S +IFS + D + V+W ++++GY   G  ++A+ +F EM 
Sbjct: 384 ELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMR 443

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
            + +   ++ F +VL AC++   +   ++    +     N +  +   ++D   + G ++
Sbjct: 444 AAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIR 503

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEH 495
           +A ++ +S+  + D   W  ++ A   H
Sbjct: 504 DALKVFESI-VECDVVSWNSIISAYALH 530



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 178/387 (45%), Gaps = 6/387 (1%)

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEG--LEGSIYVENSLMDVYATCCISMDNAR 168
           +++  +  L+ C           VH   ++ G   +   +  N L++ YA     +  AR
Sbjct: 44  DSYACARFLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLG-PLATAR 102

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            +F+ M  +N VS+ TL+ GYA  G     L +F+ +  EG E+N +  +  ++   +  
Sbjct: 103 RLFDGMPERNRVSFVTLMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTMD 162

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
                  IHA   K G   N  V  +++D Y     +  A   FD +  KD +TW  +++
Sbjct: 163 APGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVS 222

Query: 289 GYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
            Y ++   E  LN FSKM+   F PN F  TS + A   L++   G+ +H   V+   D 
Sbjct: 223 CYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDT 282

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
              +  AL+DMYAKCG+I D+  IF  +   D++ W+ ++  Y      ++A E+F  M+
Sbjct: 283 EPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMM 342

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
           +S V P+      VL AC++   ++ G +               +   ++D+  +   ++
Sbjct: 343 RSFVVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNME 402

Query: 468 EAYELIKSMPFKPDESVWGPLL-GACK 493
            + E+  S+    +E  W  ++ G C+
Sbjct: 403 NSLEIFSSLQ-DANEVSWNTIIVGYCQ 428



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 149/286 (52%), Gaps = 12/286 (4%)

Query: 211 EMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVM--NSILDMYCRFDCLSDA 268
           +++ Y+ +  ++ C + G    G+ +HA V++ G  + L     N +L+ Y +   L+ A
Sbjct: 42  KLDSYACARFLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATA 101

Query: 269 NQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATL 327
            + FD M E++ +++ T++ GY   G   E L +F +++ E    N F  T+I+    T+
Sbjct: 102 RRLFDGMPERNRVSFVTLMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTM 161

Query: 328 AA--LSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTS 385
            A  L+CG  +HA   + G D N  +  ALID Y+ CG +  ++ +F  +  +D VTWT+
Sbjct: 162 DAPGLACG--IHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTA 219

Query: 386 MMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTA--CSHAGLVDEGLKYFKSMND 443
           M+  Y  +   + A+  F +M  +G +P+  V  + L A  C  + L+ +G+        
Sbjct: 220 MVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTL 279

Query: 444 YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           Y+  P+  + G ++D+  + G +++A+ + + +P   D  +W  L+
Sbjct: 280 YDTEPH--VGGALLDMYAKCGDIEDAHAIFEMIP-HDDVILWSFLI 322


>gi|356495778|ref|XP_003516750.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
           chloroplastic-like [Glycine max]
          Length = 765

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 192/536 (35%), Positives = 305/536 (56%), Gaps = 3/536 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           ++K Y D      A   FD++ ++D+ SW+ +I+ YT     ++A  +F+ M+   + PN
Sbjct: 132 ILKMYCDCKSFTSAERFFDKIVDQDLSSWSTIISAYTEEGRIDEAVRLFLRMLDLGITPN 191

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
           +   S+++ +      L     +H   I+ G   +I +E  + ++Y  C   +D A +  
Sbjct: 192 SSIFSTLIMSFTDPSMLDLGKQIHSQLIRIGFAANISIETLISNMYVKCGW-LDGAEVAT 250

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           N M  KN V+ T L+ GY  +      L +F +M+ EGVE++ + FSI ++ACA+ G + 
Sbjct: 251 NKMTRKNAVACTGLMVGYTKAARNRDALLLFGKMISEGVELDGFVFSIILKACAALGDLY 310

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            GK IH+  IK G  S + V   ++D Y +      A Q F+ + E +  +W+ +IAGY 
Sbjct: 311 TGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQAFESIHEPNDFSWSALIAGYC 370

Query: 292 KSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           +SG     L +F  ++S+    N F +T+I  AC+ ++ L CG Q+HA  +++GL   L+
Sbjct: 371 QSGQFDRALEVFKAIRSKGVLLNSFIYTNIFQACSAVSDLICGAQIHADAIKKGLVAYLS 430

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
             +A+I MY+KCG +  + + F  +   D V WT+++  +  HG   EA+ LF EM  SG
Sbjct: 431 GESAMISMYSKCGQVDYAHQAFLTIDKPDTVAWTAIICAHAYHGKAFEALRLFKEMQGSG 490

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEA 469
           VRP+ + F+ +L ACSH+GLV EG K   SM+D Y VNP  + Y C++D+  RAG ++EA
Sbjct: 491 VRPNAVTFIGLLNACSHSGLVKEGKKILDSMSDEYGVNPTIDHYNCMIDVYSRAGLLQEA 550

Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529
            E+I+S+PF+PD   W  LLG C  HR   +G +AA  +  L P    TY+I+ N+YA  
Sbjct: 551 LEVIRSLPFEPDVMSWKSLLGGCWSHRNLEIGMIAADNIFRLDPLDSATYVIMFNLYALA 610

Query: 530 GKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           GKW+E A+FRK+M     +KEV  SWI V+ KV  F+  D+    T+ +Y  L+ L
Sbjct: 611 GKWDEAAQFRKMMAERNLRKEVSCSWIIVKGKVHRFVVGDRHHPQTEQIYSKLKEL 666



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 112/448 (25%), Positives = 211/448 (47%), Gaps = 23/448 (5%)

Query: 36  SDPPLIPKGPSI--------------LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWT 81
           +DP ++  G  I              + T +   Y   G ++ A    ++M  ++ V+ T
Sbjct: 203 TDPSMLDLGKQIHSQLIRIGFAANISIETLISNMYVKCGWLDGAEVATNKMTRKNAVACT 262

Query: 82  VMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKE 141
            ++ GYT    +  A  +F +M+   V  + F  S +LKAC  +  L     +H   IK 
Sbjct: 263 GLMVGYTKAARNRDALLLFGKMISEGVELDGFVFSIILKACAALGDLYTGKQIHSYCIKL 322

Query: 142 GLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGV 201
           GLE  + V   L+D Y  C    + AR  F  +   ND SW+ LI GY  SG     L V
Sbjct: 323 GLESEVSVGTPLVDFYVKCA-RFEAARQAFESIHEPNDFSWSALIAGYCQSGQFDRALEV 381

Query: 202 FKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR 261
           FK +  +GV +N + ++   +AC++   +  G  IHA  IK G  + L   ++++ MY +
Sbjct: 382 FKAIRSKGVLLNSFIYTNIFQACSAVSDLICGAQIHADAIKKGLVAYLSGESAMISMYSK 441

Query: 262 FDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSI 320
              +  A+Q F  + + D + W  II  +   G + E L +F +M+     PN  TF  +
Sbjct: 442 CGQVDYAHQAFLTIDKPDTVAWTAIICAHAYHGKAFEALRLFKEMQGSGVRPNAVTFIGL 501

Query: 321 IAACATLAALSCGQQVHAGIVRR-GLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DR 378
           + AC+    +  G+++   +    G++  +   N +ID+Y++ G + ++ ++   +  + 
Sbjct: 502 LNACSHSGLVKEGKKILDSMSDEYGVNPTIDHYNCMIDVYSRAGLLQEALEVIRSLPFEP 561

Query: 379 DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP-DRIVFMAVLTACSHAGLVDEGLKY 437
           D+++W S++ G  +H + +  +   D + +  + P D   ++ +    + AG  DE  ++
Sbjct: 562 DVMSWKSLLGGCWSHRNLEIGMIAADNIFR--LDPLDSATYVIMFNLYALAGKWDEAAQF 619

Query: 438 FKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
            K M + N+   KE+    + + G+  R
Sbjct: 620 RKMMAERNL--RKEVSCSWIIVKGKVHR 645



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 165/322 (51%), Gaps = 7/322 (2%)

Query: 209 GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDA 268
           G+ +NP S+    + C + G +S GKL H  + +    SN  + N IL MYC     + A
Sbjct: 87  GISINPRSYEYLFKMCGTLGALSDGKLFHNRLQRMA-NSNKFIDNCILKMYCDCKSFTSA 145

Query: 269 NQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATL 327
            ++FD++ ++DL +W+TII+ Y + G   E + +F +M     +PN   F+++I +    
Sbjct: 146 ERFFDKIVDQDLSSWSTIISAYTEEGRIDEAVRLFLRMLDLGITPNSSIFSTLIMSFTDP 205

Query: 328 AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMM 387
           + L  G+Q+H+ ++R G   N+++   + +MY KCG +  ++   ++M+ ++ V  T +M
Sbjct: 206 SMLDLGKQIHSQLIRIGFAANISIETLISNMYVKCGWLDGAEVATNKMTRKNAVACTGLM 265

Query: 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN 447
           +GY      ++A+ LF +M+  GV  D  VF  +L AC+  G +  G +         + 
Sbjct: 266 VGYTKAARNRDALLLFGKMISEGVELDGFVFSIILKACAALGDLYTGKQIHSYCIKLGLE 325

Query: 448 PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL-GACKEHRLPNLGKLAAL 506
               +   +VD   +  R + A +  +S+  +P++  W  L+ G C+  +      L   
Sbjct: 326 SEVSVGTPLVDFYVKCARFEAARQAFESI-HEPNDFSWSALIAGYCQSGQFDR--ALEVF 382

Query: 507 RVLDLKPNMMGTYIILSNIYAA 528
           + +  K  ++ ++ I +NI+ A
Sbjct: 383 KAIRSKGVLLNSF-IYTNIFQA 403


>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
          Length = 629

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 184/537 (34%), Positives = 315/537 (58%), Gaps = 12/537 (2%)

Query: 70  DEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLS 129
           D   E +V ++  +I+G+ +     + +  + +M    V P+ FT    +KAC  +  + 
Sbjct: 97  DPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACLDVLEIK 156

Query: 130 NAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGY 189
               +HG+  K GLE  +++ ++L++ Y    + M++A++ F ++  ++ V W  ++ GY
Sbjct: 157 K---IHGLLFKFGLELDVFIGSALVNCYLKFGL-MEHAQVAFEELPIRDVVLWNAMVNGY 212

Query: 190 AHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNL 249
           A  G     L  F+ M  E V  + ++ +  +   A  G ++ G++IH   +K G+ S +
Sbjct: 213 AQIGQFEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGV 272

Query: 250 PVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSE 308
            V NS++DMY +  C+ DA + F+ M EKD+ +WN+I++ +E+ G  +  L +  +M   
Sbjct: 273 AVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGA 332

Query: 309 RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL--DG----NLALANALIDMYAKC 362
              P+  T T+++ AC+ LAAL  G+++H  ++  GL  DG    ++ L NA+IDMYAKC
Sbjct: 333 GIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKC 392

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
           G++ D+  +F  MS++D+ +W  M++GYG HG+G EA+E+F  M +  ++PD + F+ VL
Sbjct: 393 GSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVL 452

Query: 423 TACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481
           +ACSHAG V +G  +   M + Y+V P  E Y CV+D+LGRAG++ EAYEL  +MP + +
Sbjct: 453 SACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEAN 512

Query: 482 ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKI 541
             VW  LL AC+ H+   L ++AA RV +L+P   G+Y+++SN+Y A G++EE  + R  
Sbjct: 513 PVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHT 572

Query: 542 MRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDI 598
           MR    +K  G SWIE+++ V  F++ D+       +Y  L  L   + E  Y PD+
Sbjct: 573 MRQQNVRKTPGCSWIELKNGVHVFVSADRAHPEAXSIYAGLNSLTARLXEHGYVPDV 629



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 99/359 (27%), Positives = 180/359 (50%), Gaps = 12/359 (3%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + + L+  Y   GL+E A+  F+E+P RDVV W  M+ GY            F  M   
Sbjct: 172 FIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDE 231

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMD 165
            V P+ FT++  L     M  L+N  ++HG A+K G +  + V NSL+D+Y  C CI  +
Sbjct: 232 SVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCI--E 289

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +A  +F  M+ K+  SW ++++ +   G+  G L +   ML  G++ +  + +  + AC+
Sbjct: 290 DALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACS 349

Query: 226 STGWVSFGKLIHAAVIKHGFG------SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
               +  G+ IH  +I  G G       ++ + N+++DMY +   + DA+  F+ M+ KD
Sbjct: 350 HLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKD 409

Query: 280 LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           + +WN +I GY   G  +E L MFS+M   +  P+  TF  +++AC+    +S G+    
Sbjct: 410 VASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLV 469

Query: 339 GIVRR-GLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGH 395
            +  +  +   +     +IDM  + G + ++ ++   M  + + V W +++     H H
Sbjct: 470 QMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKH 528


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 194/559 (34%), Positives = 316/559 (56%), Gaps = 38/559 (6%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           ++ +Y   G +E+ R +FD+M   D VS+  +IAG++   C +QA   FV M        
Sbjct: 95  MLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFEST 154

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
            +T  SVL AC  +  +     +HG  +   L  S++V N+L ++YA C  ++D AR +F
Sbjct: 155 DYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCG-ALDQARWLF 213

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           + M  KN VSW ++I+GY  +G       +F EM   G+  +  + S             
Sbjct: 214 DRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTIS------------- 260

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
                                 +IL  Y +   + +A + F E+ EKD + W T++ G  
Sbjct: 261 ----------------------NILSAYFQCGYIDEACKTFREIKEKDKVCWTTMMVGCA 298

Query: 292 KSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           ++G  E  L +F +M  E   P+ FT +S++++CA LA+L  GQ VH   V  G+D +L 
Sbjct: 299 QNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLL 358

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           +++AL+DMY+KCG  +D+  +F  M  R++++W SM++GY  +G   EA+ L++EM+   
Sbjct: 359 VSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHEN 418

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEA 469
           ++PD I F+ VL+AC HAGLV+ G  YF S++  + +NP  + Y C+++LLGRAG + +A
Sbjct: 419 LKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKA 478

Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529
            +LIKSM F+P+  +W  LL  C+ +   N G++AA  + +L P+  G YI+LSNIYAA 
Sbjct: 479 VDLIKSMTFEPNCLIWSTLLSVCRINCDVNNGEMAARHLFELDPHNAGPYIMLSNIYAAC 538

Query: 530 GKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHM 589
           G+W++ A  R +M+    KK    SWIE+ ++V  F+A D+  S T+ +Y  L  LI+ +
Sbjct: 539 GRWKDVAAVRSLMKNNKIKKFAAYSWIEIDNQVHKFVAEDRTHSETEQIYEELNRLIKKL 598

Query: 590 NETAYEPDIDCLIHDLEGE 608
            E+ + PD + ++HD+  E
Sbjct: 599 QESGFTPDTNLVLHDVVEE 617


>gi|15228265|ref|NP_190368.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207726|sp|Q9STS9.1|PP268_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g47840
 gi|4741201|emb|CAB41867.1| putative protein [Arabidopsis thaliana]
 gi|332644818|gb|AEE78339.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 706

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 197/541 (36%), Positives = 306/541 (56%), Gaps = 3/541 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + ++L+  Y   G I+++  +F EMP R+ V+WT +I G      + +  T F EM R+E
Sbjct: 145 VGSSLLDMYKRVGKIDKSCRVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSE 204

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
              + +T +  LKAC G++ +     +H   I  G   ++ V NSL  +Y T C  M + 
Sbjct: 205 ELSDTYTFAIALKACAGLRQVKYGKAIHTHVIVRGFVTTLCVANSLATMY-TECGEMQDG 263

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             +F +M  ++ VSWT+LI  Y   G     +  F +M    V  N  +F+    ACAS 
Sbjct: 264 LCLFENMSERDVVSWTSLIVAYKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACASL 323

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             + +G+ +H  V+  G   +L V NS++ MY     L  A+  F  M  +D+I+W+TII
Sbjct: 324 SRLVWGEQLHCNVLSLGLNDSLSVSNSMMKMYSTCGNLVSASVLFQGMRCRDIISWSTII 383

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            GY ++G   E    FS M+     P  F   S+++    +A +  G+QVHA  +  GL+
Sbjct: 384 GGYCQAGFGEEGFKYFSWMRQSGTKPTDFALASLLSVSGNMAVIEGGRQVHALALCFGLE 443

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            N  + ++LI+MY+KCG+I ++  IF E    D+V+ T+M+ GY  HG  KEAI+LF++ 
Sbjct: 444 QNSTVRSSLINMYSKCGSIKEASMIFGETDRDDIVSLTAMINGYAEHGKSKEAIDLFEKS 503

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGR 465
           +K G RPD + F++VLTAC+H+G +D G  YF  M + YN+ P KE YGC+VDLL RAGR
Sbjct: 504 LKVGFRPDSVTFISVLTACTHSGQLDLGFHYFNMMQETYNMRPAKEHYGCMVDLLCRAGR 563

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           + +A ++I  M +K D+ VW  LL ACK       G+ AA R+L+L P      + L+NI
Sbjct: 564 LSDAEKMINEMSWKKDDVVWTTLLIACKAKGDIERGRRAAERILELDPTCATALVTLANI 623

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           Y++ G  EE A  RK M+  G  KE G S I+++D V  F++ D+    ++ +Y +LE+ 
Sbjct: 624 YSSTGNLEEAANVRKNMKAKGVIKEPGWSSIKIKDCVSAFVSGDRFHPQSEDIYNILELA 683

Query: 586 I 586
           +
Sbjct: 684 V 684



 Score =  263 bits (671), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 136/420 (32%), Positives = 241/420 (57%), Gaps = 4/420 (0%)

Query: 53  IKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM--VRNEVNP 110
           ++S  + G +  AR +FD+MP  D+VSWT +I  Y + N  ++A  +F  M  V + V+P
Sbjct: 47  LRSLINAGNLRAARQVFDKMPHGDIVSWTSIIKRYVTANNSDEALILFSAMRVVDHAVSP 106

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           +   LS VLKAC    +++    +H  A+K  L  S+YV +SL+D+Y      +D +  V
Sbjct: 107 DTSVLSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVG-KIDKSCRV 165

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F++M ++N V+WT +ITG  H+G    GL  F EM       + Y+F+IA++ACA    V
Sbjct: 166 FSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQV 225

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
            +GK IH  VI  GF + L V NS+  MY     + D    F+ M+E+D+++W ++I  Y
Sbjct: 226 KYGKAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLFENMSERDVVSWTSLIVAY 285

Query: 291 EKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
           ++ G   + +  F KM++ +  PN  TF S+ +ACA+L+ L  G+Q+H  ++  GL+ +L
Sbjct: 286 KRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLSRLVWGEQLHCNVLSLGLNDSL 345

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
           +++N+++ MY+ CGN+  +  +F  M  RD+++W++++ GY   G G+E  + F  M +S
Sbjct: 346 SVSNSMMKMYSTCGNLVSASVLFQGMRCRDIISWSTIIGGYCQAGFGEEGFKYFSWMRQS 405

Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
           G +P      ++L+   +  +++ G +       + +  N  +   ++++  + G +KEA
Sbjct: 406 GTKPTDFALASLLSVSGNMAVIEGGRQVHALALCFGLEQNSTVRSSLINMYSKCGSIKEA 465



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 168/327 (51%), Gaps = 4/327 (1%)

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYS--FSIAVRAC 224
           AR VF+ M   + VSWT++I  Y  + N    L +F  M +    ++P +   S+ ++AC
Sbjct: 59  ARQVFDKMPHGDIVSWTSIIKRYVTANNSDEALILFSAMRVVDHAVSPDTSVLSVVLKAC 118

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
             +  +++G+ +HA  +K    S++ V +S+LDMY R   +  + + F EM  ++ +TW 
Sbjct: 119 GQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSCRVFSEMPFRNAVTWT 178

Query: 285 TIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            II G   +G   E L  FS+M       + +TF   + ACA L  +  G+ +H  ++ R
Sbjct: 179 AIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQVKYGKAIHTHVIVR 238

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G    L +AN+L  MY +CG + D   +F  MS+RD+V+WTS+++ Y   G   +A+E F
Sbjct: 239 GFVTTLCVANSLATMYTECGEMQDGLCLFENMSERDVVSWTSLIVAYKRIGQEVKAVETF 298

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
            +M  S V P+   F ++ +AC+    +  G +   ++    +N +  +   ++ +    
Sbjct: 299 IKMRNSQVPPNEQTFASMFSACASLSRLVWGEQLHCNVLSLGLNDSLSVSNSMMKMYSTC 358

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLG 490
           G +  A  L + M  + D   W  ++G
Sbjct: 359 GNLVSASVLFQGMRCR-DIISWSTIIG 384



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 126/259 (48%), Gaps = 14/259 (5%)

Query: 265 LSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMK--SERFSPNCFTFTSII 321
           L  A Q FD+M   D+++W +II  Y   + S E L +FS M+      SP+    + ++
Sbjct: 56  LRAARQVFDKMPHGDIVSWTSIIKRYVTANNSDEALILFSAMRVVDHAVSPDTSVLSVVL 115

Query: 322 AACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLV 381
            AC   + ++ G+ +HA  V+  L  ++ + ++L+DMY + G I  S ++FSEM  R+ V
Sbjct: 116 KACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSCRVFSEMPFRNAV 175

Query: 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441
           TWT+++ G    G  KE +  F EM +S    D   F   L AC  AGL    +KY K++
Sbjct: 176 TWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKAC--AGL--RQVKYGKAI 231

Query: 442 NDYNVNPNKEIYGCVVDLLG----RAGRVKEAYELIKSMPFKPDESVWGPLLGACKE--H 495
           + + +        CV + L       G +++   L ++M  + D   W  L+ A K    
Sbjct: 232 HTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLFENMS-ERDVVSWTSLIVAYKRIGQ 290

Query: 496 RLPNLGKLAALRVLDLKPN 514
            +  +     +R   + PN
Sbjct: 291 EVKAVETFIKMRNSQVPPN 309



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 10/123 (8%)

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM--VKSGVRPDRIVFMA 420
           GN+  ++++F +M   D+V+WTS++  Y    +  EA+ LF  M  V   V PD  V   
Sbjct: 54  GNLRAARQVFDKMPHGDIVSWTSIIKRYVTANNSDEALILFSAMRVVDHAVSPDTSVLSV 113

Query: 421 VLTACSHAGLVDEGLKYFKSMNDYNVNPN--KEIY--GCVVDLLGRAGRVKEAYELIKSM 476
           VL AC  +      + Y +S++ Y V  +    +Y    ++D+  R G++ ++  +   M
Sbjct: 114 VLKACGQS----SNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSCRVFSEM 169

Query: 477 PFK 479
           PF+
Sbjct: 170 PFR 172



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 7/171 (4%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S + ++LI  Y   G I+EA  +F E    D+VS T MI GY       +A  +F + ++
Sbjct: 446 STVRSSLINMYSKCGSIKEASMIFGETDRDDIVSLTAMINGYAEHGKSKEAIDLFEKSLK 505

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISM 164
               P++ T  SVL AC     L        M ++E        E+    V   C    +
Sbjct: 506 VGFRPDSVTFISVLTACTHSGQLDLGFHYFNM-MQETYNMRPAKEHYGCMVDLLCRAGRL 564

Query: 165 DNARLVFNDMKW-KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP 214
            +A  + N+M W K+DV WTTL+      G+   G    + +L    E++P
Sbjct: 565 SDAEKMINEMSWKKDDVVWTTLLIACKAKGDIERGRRAAERIL----ELDP 611


>gi|357510605|ref|XP_003625591.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500606|gb|AES81809.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 887

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 189/558 (33%), Positives = 308/558 (55%), Gaps = 5/558 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN-EVNP 110
           LI  Y + G IE A  +F  +P +D++SW  MI GY       +A  +F +++R     P
Sbjct: 301 LISMYTNFGQIEHASNVFTRIPTKDLISWGTMITGYIQLGYRVEALYLFRDLLRQGTYQP 360

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           N F   SV  AC  +  L     VHGM +K GL  +++   SL D+YA     + +A++ 
Sbjct: 361 NEFIFGSVFSACSSLLELEYGKQVHGMCVKFGLRRNVFAGCSLCDMYAKFGF-LPSAKMA 419

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F  +K  + VSW  +I  +A +G+    +  F++M+  G+  +  ++   +  C S   +
Sbjct: 420 FCQIKNPDIVSWNAIIAAFADNGDANEAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRL 479

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLITWNTII-A 288
           + G+ IH+ ++K GF   + V NS+L MY +   L DA   F +++   +L++WN I+ A
Sbjct: 480 NQGRQIHSYIVKIGFDKEITVCNSLLTMYTKCSHLHDALNVFRDISRNANLVSWNAILSA 539

Query: 289 GYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
             +K    E   ++ +M      P+  T T+++  CA L +L  G QVH   ++ GL  +
Sbjct: 540 CLQKKQEGETFRLYKEMHFSGNKPDSITITTLLGTCAELTSLGVGNQVHCYSIKSGLILD 599

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           +++ N LIDMYAKCG++  ++ +F    + D+V+W+S+++GY   G G EA+ LF  M  
Sbjct: 600 VSVCNGLIDMYAKCGSLKHARDVFDSTQNLDIVSWSSLIVGYAQCGLGHEALNLFRIMTN 659

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVK 467
            GV+P+ + ++  L+ACSH GLV+EG + +KSM  ++ + P +E + C+VDLL RAG + 
Sbjct: 660 LGVQPNEVTYLGALSACSHIGLVEEGWRLYKSMETEHGIPPTREHFSCIVDLLARAGCLH 719

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527
           EA   I+      D + W  LL ACK H   ++ +  A  +L L P+     ++L NI+A
Sbjct: 720 EAETFIQKSGLDADITAWKTLLAACKTHNNVDIAERGAGNILKLDPSNSAAMVMLCNIHA 779

Query: 528 AEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIR 587
           + G WEE AK RK+M+ MG +K  G SWIEV+DK   F + D        +Y +LE L  
Sbjct: 780 SAGNWEEVAKLRKLMKQMGVQKVPGQSWIEVKDKFHIFFSEDSSHPQRNLIYTMLEELWS 839

Query: 588 HMNETAYEPDIDCLIHDL 605
            + +  Y+P   C I ++
Sbjct: 840 QVLDDGYDPCQSCYIQNM 857



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 115/389 (29%), Positives = 211/389 (54%), Gaps = 11/389 (2%)

Query: 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFND 173
           T +S++ AC   +SL  A  +H   +K   + SI ++N ++++Y  C  SM +AR VF+ 
Sbjct: 161 TYTSLVLACANFRSLDYAKKIHDHVLKSNYQPSIILQNHMINMYGKCG-SMKDARKVFDT 219

Query: 174 MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG 233
           M+  N VSWT++I+GY+ +G     + ++ +M   G   +  +F   ++AC   G +  G
Sbjct: 220 MQLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTFGSVIKACYIAGDIDLG 279

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
           + +HA VIK  FG +L   N+++ MY  F  +  A+  F  +  KDLI+W T+I GY + 
Sbjct: 280 RQLHAHVIKSWFGHHLTSQNALISMYTNFGQIEHASNVFTRIPTKDLISWGTMITGYIQL 339

Query: 294 G-SSECLNMFSK-MKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLAL 351
           G   E L +F   ++   + PN F F S+ +AC++L  L  G+QVH   V+ GL  N+  
Sbjct: 340 GYRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSSLLELEYGKQVHGMCVKFGLRRNVFA 399

Query: 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411
             +L DMYAK G +  ++  F ++ + D+V+W +++  +  +G   EAI+ F +M+  G+
Sbjct: 400 GCSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWNAIIAAFADNGDANEAIDFFRQMIHIGL 459

Query: 412 RPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDY--NVNPNKEIYGC--VVDLLGRAGRVK 467
            PD I ++++L  C     +++G    + ++ Y   +  +KEI  C  ++ +  +   + 
Sbjct: 460 TPDSITYISLLCTCGSPVRLNQG----RQIHSYIVKIGFDKEITVCNSLLTMYTKCSHLH 515

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHR 496
           +A  + + +    +   W  +L AC + +
Sbjct: 516 DALNVFRDISRNANLVSWNAILSACLQKK 544



 Score =  211 bits (537), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 150/546 (27%), Positives = 263/546 (48%), Gaps = 44/546 (8%)

Query: 5   RLLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATN-LIKSYFDEGLIE 63
           R L YA   H H            V KS+ Q         PSI+  N +I  Y   G ++
Sbjct: 173 RSLDYAKKIHDH------------VLKSNYQ---------PSIILQNHMINMYGKCGSMK 211

Query: 64  EARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACK 123
           +AR +FD M   +VVSWT MI+GY+     N A  ++++M R+   P+  T  SV+KAC 
Sbjct: 212 DARKVFDTMQLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTFGSVIKACY 271

Query: 124 GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWT 183
               +     +H   IK      +  +N+L+ +Y T    +++A  VF  +  K+ +SW 
Sbjct: 272 IAGDIDLGRQLHAHVIKSWFGHHLTSQNALISMY-TNFGQIEHASNVFTRIPTKDLISWG 330

Query: 184 TLITGYAHSGNGYGGLGVFKEMLLEGV-EMNPYSFSIAVRACASTGWVSFGKLIHAAVIK 242
           T+ITGY   G     L +F+++L +G  + N + F     AC+S   + +GK +H   +K
Sbjct: 331 TMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSSLLELEYGKQVHGMCVK 390

Query: 243 HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNM 301
            G   N+    S+ DMY +F  L  A   F ++   D+++WN IIA +  +G ++E ++ 
Sbjct: 391 FGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWNAIIAAFADNGDANEAIDF 450

Query: 302 FSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK 361
           F +M     +P+  T+ S++  C +   L+ G+Q+H+ IV+ G D  + + N+L+ MY K
Sbjct: 451 FRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQIHSYIVKIGFDKEITVCNSLLTMYTK 510

Query: 362 CGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420
           C ++ D+  +F ++S + +LV+W +++          E   L+ EM  SG +PD I    
Sbjct: 511 CSHLHDALNVFRDISRNANLVSWNAILSACLQKKQEGETFRLYKEMHFSGNKPDSITITT 570

Query: 421 VLTACSHAGLVDEGLKYFKSMNDYNVNP----NKEIYGCVVDLLGRAGRVKEAYELIKSM 476
           +L  C+    +  G      ++ Y++      +  +   ++D+  + G +K A ++  S 
Sbjct: 571 LLGTCAELTSLGVG----NQVHCYSIKSGLILDVSVCNGLIDMYAKCGSLKHARDVFDST 626

Query: 477 PFKPDESVWGPLLGACKE----HRLPNLGKLAALRVLDLKPN---MMGTYIILSNIYAAE 529
               D   W  L+    +    H   NL ++  +  L ++PN    +G     S+I   E
Sbjct: 627 Q-NLDIVSWSSLIVGYAQCGLGHEALNLFRI--MTNLGVQPNEVTYLGALSACSHIGLVE 683

Query: 530 GKWEEF 535
             W  +
Sbjct: 684 EGWRLY 689



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 151/284 (53%), Gaps = 11/284 (3%)

Query: 214 PYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFD 273
           P +++  V ACA+   + + K IH  V+K  +  ++ + N +++MY +   + DA + FD
Sbjct: 159 PSTYTSLVLACANFRSLDYAKKIHDHVLKSNYQPSIILQNHMINMYGKCGSMKDARKVFD 218

Query: 274 EMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSC 332
            M   ++++W ++I+GY ++G +++ + M+ +M      P+  TF S+I AC     +  
Sbjct: 219 TMQLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTFGSVIKACYIAGDIDL 278

Query: 333 GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA 392
           G+Q+HA +++     +L   NALI MY   G I  +  +F+ +  +DL++W +M+ GY  
Sbjct: 279 GRQLHAHVIKSWFGHHLTSQNALISMYTNFGQIEHASNVFTRIPTKDLISWGTMITGYIQ 338

Query: 393 HGHGKEAIELFDEMVKSGV-RPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE 451
            G+  EA+ LF ++++ G  +P+  +F +V +ACS    ++ G +       + +  N  
Sbjct: 339 LGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSSLLELEYGKQVHGMCVKFGLRRNV- 397

Query: 452 IYGC-VVDLLGRAG---RVKEAYELIKSMPFKPDESVWGPLLGA 491
             GC + D+  + G     K A+  IK+    PD   W  ++ A
Sbjct: 398 FAGCSLCDMYAKFGFLPSAKMAFCQIKN----PDIVSWNAIIAA 437



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 114/215 (53%), Gaps = 6/215 (2%)

Query: 278 KDLITWNTIIAGYEKSGSSECLNMFS---KMKSERFSPNCFTFTSIIAACATLAALSCGQ 334
           K+L T + II   ++    E L  F    K  +  F P+  T+TS++ ACA   +L   +
Sbjct: 122 KELPTNSYIIFLCKQHHYKEALEAFDFHLKNSNSHFEPS--TYTSLVLACANFRSLDYAK 179

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
           ++H  +++     ++ L N +I+MY KCG++ D++K+F  M   ++V+WTSM+ GY  +G
Sbjct: 180 KIHDHVLKSNYQPSIILQNHMINMYGKCGSMKDARKVFDTMQLPNVVSWTSMISGYSQNG 239

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG 454
              +AI ++ +M +SG  PD++ F +V+ AC  AG +D G +    +       +     
Sbjct: 240 QANDAIIMYIQMTRSGQFPDQLTFGSVIKACYIAGDIDLGRQLHAHVIKSWFGHHLTSQN 299

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
            ++ +    G+++ A  +   +P K D   WG ++
Sbjct: 300 ALISMYTNFGQIEHASNVFTRIPTK-DLISWGTMI 333


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 202/562 (35%), Positives = 322/562 (57%), Gaps = 3/562 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           IL  +L+  Y     +E A   F      ++V W VM+  Y   +  + ++ +F +M   
Sbjct: 398 ILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQME 457

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + PN FT  S+L+ C  + +L     +H   IK G + ++YV + L+D+YA     +  
Sbjct: 458 GMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYG-QLAL 516

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  +   +   + VSWT +I GY         L +F+EM   G++ +   F+ A+ ACA 
Sbjct: 517 ALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAG 576

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  G+ IHA     GFG++L + N+++ +Y R   + +A   F+++ +K+ I+WN++
Sbjct: 577 IRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSL 636

Query: 287 IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           ++G  +SG   E L +F +M       N FT+ S I+A A+LA +  GQQ+H+ +++ G 
Sbjct: 637 VSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGY 696

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           D    ++N+LI +YAK G+ISD+ + F++MS+R++++W +M+ GY  HG G EA+ LF+E
Sbjct: 697 DSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEE 756

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAG 464
           M   G+ P+ + F+ VL+ACSH GLV EGL YF+SM   +++ P  E Y CVVDLLGRAG
Sbjct: 757 MKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAG 816

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           ++  A E IK MP   D  +W  LL AC  H+   +G+ AA  +L+L+P    TY+++SN
Sbjct: 817 QLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISN 876

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           IYA   +W      RK+M+  G KKE G SWIEV++ V  F A DK+   T  +Y  +  
Sbjct: 877 IYAVSRQWIHRDWSRKLMKDXGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGH 936

Query: 585 LIRHMNETAYEPDIDCLIHDLE 606
           L R  +E  Y  D   L+++ E
Sbjct: 937 LNRRTSEIGYVQDSFSLLNESE 958



 Score =  218 bits (555), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 122/456 (26%), Positives = 231/456 (50%), Gaps = 4/456 (0%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G  +L  +L+ +YF  G    A  +FDE   R V SW  MI  + +   + Q + +F  M
Sbjct: 91  GEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRM 150

Query: 104 VRNEVNPNAFTLSSVLKACKGMK-SLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           +   + PN +T + VLKAC G   + +    VH      G + S  V N L+D+Y+    
Sbjct: 151 LAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGY 210

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            +++A+ VFN +  K+ V+W  +I+G + +G     + +F +M    +   PY  S  + 
Sbjct: 211 -IESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLS 269

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           A         G+ +H  VIK GF S   V N ++ +Y R   L  A + F  M  +D ++
Sbjct: 270 ASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVS 329

Query: 283 WNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           +N++I+G  + G S   L +F+KM+ +   P+C T  S+++ACA++ AL  G Q+H+  +
Sbjct: 330 YNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAI 389

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           + G+  ++ L  +L+D+Y+KC ++  + K F      ++V W  M++ YG   +  ++ E
Sbjct: 390 KAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFE 449

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461
           +F +M   G+ P++  + ++L  C+  G +  G +    +       N  +   ++D+  
Sbjct: 450 IFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYA 509

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
           + G++  A  +++ +P + D   W  ++    +H +
Sbjct: 510 KYGQLALALRILRRLP-EDDVVSWTAMIAGYVQHDM 544



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 182/359 (50%), Gaps = 5/359 (1%)

Query: 118 VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK 177
           +L+ C    SL     +H    K G +G   + +SL+D Y         A  VF++   +
Sbjct: 64  LLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHG-DQHGAVKVFDENSNR 122

Query: 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG--KL 235
           +  SW  +I  +    + +    +F+ ML EG+  N Y+F+  ++AC   G ++F   K 
Sbjct: 123 SVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVG-GDIAFNYVKQ 181

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG- 294
           +H+    +GF S+  V N ++D+Y +   +  A + F+ +  KD++TW  +I+G  ++G 
Sbjct: 182 VHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGL 241

Query: 295 SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
             E + +F  M +    P  +  +S+++A   +     G+Q+H  +++ G      + N 
Sbjct: 242 EEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNG 301

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
           L+ +Y++   +  +++IFS M+ RD V++ S++ G    G    A+ELF +M +  ++PD
Sbjct: 302 LVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPD 361

Query: 415 RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELI 473
            I   ++L+AC+  G + +G++         ++ +  + G ++DL  +   V+ A++  
Sbjct: 362 CITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFF 420



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 137/271 (50%), Gaps = 2/271 (0%)

Query: 208 EGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSD 267
            GV  N  ++   +  C ++G +     +H  + K GF     +++S++D Y R      
Sbjct: 52  RGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHG 111

Query: 268 ANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAAC-A 325
           A + FDE + + + +WN +I  +    S+ +   +F +M +E  +PN +TF  ++ AC  
Sbjct: 112 AVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVG 171

Query: 326 TLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTS 385
              A +  +QVH+     G D +  +AN LID+Y+K G I  ++K+F+ +  +D+VTW +
Sbjct: 172 GDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVA 231

Query: 386 MMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYN 445
           M+ G   +G  +EAI LF +M  S + P   V  +VL+A +   L + G +    +  + 
Sbjct: 232 MISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWG 291

Query: 446 VNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
            +    +   +V L  R+ ++  A  +  +M
Sbjct: 292 FHSETYVCNGLVALYSRSRKLISAERIFSTM 322



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 111/249 (44%), Gaps = 12/249 (4%)

Query: 292 KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLAL 351
           + G S+ + + + M+      N   +  ++  C T  +L    ++H  I + G DG   L
Sbjct: 36  EQGKSKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLL 95

Query: 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411
            ++L+D Y + G+   + K+F E S+R + +W  M+  + A     +   LF  M+  G+
Sbjct: 96  IDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGI 155

Query: 412 RPDRIVFMAVLTACSHAGLVDEGLKYFKSMND----YNVNPNKEIYGCVVDLLGRAGRVK 467
            P+   F  VL AC      D    Y K ++     Y  + +  +   ++DL  + G ++
Sbjct: 156 TPNGYTFAGVLKACVGG---DIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIE 212

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN-MMGTYIILSNIY 526
            A ++   +  K D   W  ++    ++    L + A L   D+  + +  T  +LS++ 
Sbjct: 213 SAKKVFNCICMK-DIVTWVAMISGLSQN---GLEEEAILLFCDMHASEIFPTPYVLSSVL 268

Query: 527 AAEGKWEEF 535
           +A  K + F
Sbjct: 269 SASTKIQLF 277


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 202/562 (35%), Positives = 322/562 (57%), Gaps = 3/562 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           IL  +L+  Y     +E A   F      ++V W VM+  Y   +  + ++ +F +M   
Sbjct: 398 ILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQME 457

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + PN FT  S+L+ C  + +L     +H   IK G + ++YV + L+D+YA     +  
Sbjct: 458 GMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYG-QLAL 516

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  +   +   + VSWT +I GY         L +F+EM   G++ +   F+ A+ ACA 
Sbjct: 517 ALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAG 576

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  G+ IHA     GFG++L + N+++ +Y R   + +A   F+++ +K+ I+WN++
Sbjct: 577 IRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSL 636

Query: 287 IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           ++G  +SG   E L +F +M       N FT+ S I+A A+LA +  GQQ+H+ +++ G 
Sbjct: 637 VSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGY 696

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           D    ++N+LI +YAK G+ISD+ + F++MS+R++++W +M+ GY  HG G EA+ LF+E
Sbjct: 697 DSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEE 756

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAG 464
           M   G+ P+ + F+ VL+ACSH GLV EGL YF+SM   +++ P  E Y CVVDLLGRAG
Sbjct: 757 MKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAG 816

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           ++  A E IK MP   D  +W  LL AC  H+   +G+ AA  +L+L+P    TY+++SN
Sbjct: 817 QLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISN 876

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           IYA   +W      RK+M+  G KKE G SWIEV++ V  F A DK+   T  +Y  +  
Sbjct: 877 IYAVSRQWIHRDWSRKLMKDRGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGH 936

Query: 585 LIRHMNETAYEPDIDCLIHDLE 606
           L R  +E  Y  D   L+++ E
Sbjct: 937 LNRRTSEIGYVQDSFSLLNESE 958



 Score =  218 bits (555), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 122/456 (26%), Positives = 231/456 (50%), Gaps = 4/456 (0%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G  +L  +L+ +YF  G    A  +FDE   R V SW  MI  + +   + Q + +F  M
Sbjct: 91  GEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRM 150

Query: 104 VRNEVNPNAFTLSSVLKACKGMK-SLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           +   + PN +T + VLKAC G   + +    VH      G + S  V N L+D+Y+    
Sbjct: 151 LAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGY 210

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            +++A+ VFN +  K+ V+W  +I+G + +G     + +F +M    +   PY  S  + 
Sbjct: 211 -IESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLS 269

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           A         G+ +H  VIK GF S   V N ++ +Y R   L  A + F  M  +D ++
Sbjct: 270 ASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVS 329

Query: 283 WNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           +N++I+G  + G S   L +F+KM+ +   P+C T  S+++ACA++ AL  G Q+H+  +
Sbjct: 330 YNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAI 389

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           + G+  ++ L  +L+D+Y+KC ++  + K F      ++V W  M++ YG   +  ++ E
Sbjct: 390 KAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFE 449

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461
           +F +M   G+ P++  + ++L  C+  G +  G +    +       N  +   ++D+  
Sbjct: 450 IFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYA 509

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
           + G++  A  +++ +P + D   W  ++    +H +
Sbjct: 510 KYGQLALALRILRRLP-EDDVVSWTAMIAGYVQHDM 544



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 182/359 (50%), Gaps = 5/359 (1%)

Query: 118 VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK 177
           +L+ C    SL     +H    K G +G   + +SL+D Y         A  VF++   +
Sbjct: 64  LLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHG-DQHGAVKVFDENSNR 122

Query: 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG--KL 235
           +  SW  +I  +    + +    +F+ ML EG+  N Y+F+  ++AC   G ++F   K 
Sbjct: 123 SVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVG-GDIAFNYVKQ 181

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG- 294
           +H+    +GF S+  V N ++D+Y +   +  A + F+ +  KD++TW  +I+G  ++G 
Sbjct: 182 VHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGL 241

Query: 295 SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
             E + +F  M +    P  +  +S+++A   +     G+Q+H  +++ G      + N 
Sbjct: 242 EEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNG 301

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
           L+ +Y++   +  +++IFS M+ RD V++ S++ G    G    A+ELF +M +  ++PD
Sbjct: 302 LVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPD 361

Query: 415 RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELI 473
            I   ++L+AC+  G + +G++         ++ +  + G ++DL  +   V+ A++  
Sbjct: 362 CITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFF 420



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 137/271 (50%), Gaps = 2/271 (0%)

Query: 208 EGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSD 267
            GV  N  ++   +  C ++G +     +H  + K GF     +++S++D Y R      
Sbjct: 52  RGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHG 111

Query: 268 ANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAAC-A 325
           A + FDE + + + +WN +I  +    S+ +   +F +M +E  +PN +TF  ++ AC  
Sbjct: 112 AVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVG 171

Query: 326 TLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTS 385
              A +  +QVH+     G D +  +AN LID+Y+K G I  ++K+F+ +  +D+VTW +
Sbjct: 172 GDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVA 231

Query: 386 MMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYN 445
           M+ G   +G  +EAI LF +M  S + P   V  +VL+A +   L + G +    +  + 
Sbjct: 232 MISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWG 291

Query: 446 VNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
            +    +   +V L  R+ ++  A  +  +M
Sbjct: 292 FHSETYVCNGLVALYSRSRKLISAERIFSTM 322



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 111/249 (44%), Gaps = 12/249 (4%)

Query: 292 KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLAL 351
           + G S+ + + + M+      N   +  ++  C T  +L    ++H  I + G DG   L
Sbjct: 36  EQGKSKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLL 95

Query: 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411
            ++L+D Y + G+   + K+F E S+R + +W  M+  + A     +   LF  M+  G+
Sbjct: 96  IDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGI 155

Query: 412 RPDRIVFMAVLTACSHAGLVDEGLKYFKSMND----YNVNPNKEIYGCVVDLLGRAGRVK 467
            P+   F  VL AC      D    Y K ++     Y  + +  +   ++DL  + G ++
Sbjct: 156 TPNGYTFAGVLKACVGG---DIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIE 212

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN-MMGTYIILSNIY 526
            A ++   +  K D   W  ++    ++    L + A L   D+  + +  T  +LS++ 
Sbjct: 213 SAKKVFNCICMK-DIVTWVAMISGLSQN---GLEEEAILLFCDMHASEIFPTPYVLSSVL 268

Query: 527 AAEGKWEEF 535
           +A  K + F
Sbjct: 269 SASTKIQLF 277


>gi|359478617|ref|XP_003632146.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 628

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 186/514 (36%), Positives = 306/514 (59%), Gaps = 6/514 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + + L+  Y   G +  A+ LFDEMP R+VV+W  +I+GY    C   A  +F+EMV+  
Sbjct: 116 ICSALVDMYGKCGAVSSAQRLFDEMPHRNVVTWNSLISGYLHVGCPEIAIELFLEMVKVG 175

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           ++P  F++S+VL  C  M+       VHG+++K G   +I V   L+D+Y+    ++D +
Sbjct: 176 IDPTPFSVSAVLVGCWRMEDTKLGIQVHGLSMKCGFCYNIVVGTCLIDLYSKG-WNIDAS 234

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           RL+F+ M  +N ++WT+++ GYAH       + + ++M   G+ +N  +++  + + +S+
Sbjct: 235 RLMFDLMPERNIITWTSMVAGYAHCQQPVAAMVLVRDMQRLGIRLNYVTYNCLLSSFSSS 294

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMY--CRFDCLSDANQYFDEMTEKDLITWNT 285
             +   K +H  +I+ G  SN  +  +++ +Y  C    L D N+    +T  D I+WN 
Sbjct: 295 NDLDHCKQVHCRIIREGLESNSYLEVTLVTVYSECSSSSLEDFNKVCSGVTRWDQISWNA 354

Query: 286 IIAGYEKSGSSEC-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I G    G+ E  L  FSKM+      + FTFTS++ A   ++ L  G+Q+HA +++ G
Sbjct: 355 VIGGLSNLGNGEAALKCFSKMRQAGIDMDLFTFTSVLRAIGMISTLDEGKQIHALVLKAG 414

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
              NL + N L+ MYA+CG+I+D++++FS M   D+++W S++ G   HG+G+EA+ELF+
Sbjct: 415 YGSNLNVQNGLVSMYARCGSINDAKRVFSLMDRHDVISWNSLLSGCAYHGYGREAVELFE 474

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNV-NPNKEIYGCVVDLLGR 462
           +M +SGV+PD   F+ VL+AC H GL+D+GL+YF  M NDY++ +P  E Y  +VDL  R
Sbjct: 475 QMRRSGVKPDNTTFLVVLSACRHVGLLDKGLEYFDLMRNDYSLESPTTEHYSSMVDLFSR 534

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AG + EA + I +MP +P  SV+  LL AC+ H    +    A ++L + PN    Y++L
Sbjct: 535 AGYLSEAEDFINTMPIEPGPSVYKALLSACQVHGNVEIAVRCAKKLLQMCPNDPVIYVLL 594

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWI 556
           SN+ A  G W+  A  RK+M   G +KE G SWI
Sbjct: 595 SNVQATVGYWDNVASIRKVMCDRGVRKEPGYSWI 628



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 178/345 (51%), Gaps = 28/345 (8%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++ T LI  Y     I+ +R +FD MPER++++WT M+AGY        A  +  +M R 
Sbjct: 216 VVGTCLIDLYSKGWNIDASRLMFDLMPERNIITWTSMVAGYAHCQQPVAAMVLVRDMQRL 275

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM-- 164
            +  N  T + +L +      L +   VH   I+EGLE + Y+E +L+ VY+ C  S   
Sbjct: 276 GIRLNYVTYNCLLSSFSSSNDLDHCKQVHCRIIREGLESNSYLEVTLVTVYSECSSSSLE 335

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           D  ++     +W + +SW  +I G ++ GNG   L  F +M   G++M+ ++F+  +RA 
Sbjct: 336 DFNKVCSGVTRW-DQISWNAVIGGLSNLGNGEAALKCFSKMRQAGIDMDLFTFTSVLRAI 394

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
                +  GK IHA V+K G+GSNL V N ++ MY R   ++DA + F  M   D+I+WN
Sbjct: 395 GMISTLDEGKQIHALVLKAGYGSNLNVQNGLVSMYARCGSINDAKRVFSLMDRHDVISWN 454

Query: 285 TIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           ++++G    G   E + +F +M+     P+  TF  +++AC            H G++ +
Sbjct: 455 SLLSGCAYHGYGREAVELFEQMRRSGVKPDNTTFLVVLSACR-----------HVGLLDK 503

Query: 344 GLDGNLALAN-------------ALIDMYAKCGNISDSQKIFSEM 375
           GL+    + N             +++D++++ G +S+++   + M
Sbjct: 504 GLEYFDLMRNDYSLESPTTEHYSSMVDLFSRAGYLSEAEDFINTM 548



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 107/426 (25%), Positives = 206/426 (48%), Gaps = 5/426 (1%)

Query: 73  PERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAA 132
           P  D  S    IA  T     +    +  ++ ++   P A  L+ ++ +C    S+    
Sbjct: 40  PGNDFFSCNSHIACDTDEKQSSVDLKLLAQLQQHGSAPTAHILNRMVSSCAKSGSVFVGI 99

Query: 133 LVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHS 192
            +H   IK G + ++Y+ ++L+D+Y  C  ++ +A+ +F++M  +N V+W +LI+GY H 
Sbjct: 100 QLHSTIIKVGFDSNVYICSALVDMYGKCG-AVSSAQRLFDEMPHRNVVTWNSLISGYLHV 158

Query: 193 GNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVM 252
           G     + +F EM+  G++  P+S S  +  C        G  +H   +K GF  N+ V 
Sbjct: 159 GCPEIAIELFLEMVKVGIDPTPFSVSAVLVGCWRMEDTKLGIQVHGLSMKCGFCYNIVVG 218

Query: 253 NSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFS 311
             ++D+Y +   +  +   FD M E+++ITW +++AGY         + +   M+     
Sbjct: 219 TCLIDLYSKGWNIDASRLMFDLMPERNIITWTSMVAGYAHCQQPVAAMVLVRDMQRLGIR 278

Query: 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC--GNISDSQ 369
            N  T+  ++++ ++   L   +QVH  I+R GL+ N  L   L+ +Y++C   ++ D  
Sbjct: 279 LNYVTYNCLLSSFSSSNDLDHCKQVHCRIIREGLESNSYLEVTLVTVYSECSSSSLEDFN 338

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
           K+ S ++  D ++W +++ G    G+G+ A++ F +M ++G+  D   F +VL A     
Sbjct: 339 KVCSGVTRWDQISWNAVIGGLSNLGNGEAALKCFSKMRQAGIDMDLFTFTSVLRAIGMIS 398

Query: 430 LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
            +DEG +    +       N  +   +V +  R G + +A  +   M  + D   W  LL
Sbjct: 399 TLDEGKQIHALVLKAGYGSNLNVQNGLVSMYARCGSINDAKRVFSLMD-RHDVISWNSLL 457

Query: 490 GACKEH 495
             C  H
Sbjct: 458 SGCAYH 463


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 198/561 (35%), Positives = 316/561 (56%), Gaps = 7/561 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +  +L+  Y   GL+E+A+++F+ M  RD+VSW  ++AG     C  +A  +F E     
Sbjct: 238 VCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATM 297

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
                 T ++V+K C  +K L+ A  +H   +K G   +  V  +L D Y+ C    D  
Sbjct: 298 GKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADAL 357

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
            +       +N VSWT +I+G   +G+    + +F  M  + V  N +++S  ++A  S 
Sbjct: 358 NIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSI 417

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
                   IHA VIK  +     V  ++L  Y +F    DA   F  + +KD++ W+ ++
Sbjct: 418 ----LPPQIHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAML 473

Query: 288 AGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAA-LSCGQQVHAGIVRRGL 345
           + + ++G  E    +F+KM  +   PN FT +S+I ACA  +A +  G+Q HA  ++   
Sbjct: 474 SCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRY 533

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
              + +++AL+ MY++ GNI  +Q +F   +DRDLV+W SM+ GY  HG+  +AIE F +
Sbjct: 534 HDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQ 593

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAG 464
           M  SG++ D + F+AV+  C+H GLV EG +YF SM  D+ +NP  E Y C+VDL  RAG
Sbjct: 594 MEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAG 653

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           ++ E   LI+ MPF     VW  LLGAC+ H+   LGK +A ++L L+P+   TY++LSN
Sbjct: 654 KLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSN 713

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           IYAA GKW+E  + RK+M     KKE G SWI++++KV  FIA DK    +  +Y  L++
Sbjct: 714 IYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKV 773

Query: 585 LIRHMNETAYEPDIDCLIHDL 605
           +I  + +  Y P+   ++HD+
Sbjct: 774 IITRLKQDGYSPNTSFVLHDI 794



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 121/402 (30%), Positives = 209/402 (51%), Gaps = 12/402 (2%)

Query: 31  KSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEE----ARTLFDEMPERDV-VSWTVMIA 85
           K+++   P  +PK   +LAT    +  ++G+       AR   DE+P RD  V    ++ 
Sbjct: 16  KNAVNLAPEQVPK---LLATRASPARVEDGVCLRDPPGARYPLDEIPRRDAAVGANRVLF 72

Query: 86  GYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLE- 144
            Y       +    F    R  V  ++ TLS VLKAC+ +        +H + +K G + 
Sbjct: 73  DYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDR 132

Query: 145 GSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKE 204
           G +    SL+D+Y  C  S+     VF  M  KN V+WT+L+TG AH+      + +F  
Sbjct: 133 GEVSAGTSLVDMYMKCG-SVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFR 191

Query: 205 MLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264
           M  EG+  NP++F+  + A AS G +  G+ +HA  +K G  S++ V NS+++MY +   
Sbjct: 192 MRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGL 251

Query: 265 LSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAA 323
           + DA   F+ M  +D+++WNT++AG + +    E L +F + ++        T+ ++I  
Sbjct: 252 VEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKL 311

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVT 382
           CA L  L+  +Q+H+ +++ G      +  AL D Y+KCG ++D+  IFS  +  R++V+
Sbjct: 312 CANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVS 371

Query: 383 WTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTA 424
           WT+++ G   +G    A+ LF  M +  V P+   + A+L A
Sbjct: 372 WTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKA 413



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 150/306 (49%), Gaps = 2/306 (0%)

Query: 189 YAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFG-S 247
           YA  G     L  F      GV ++  + S  ++AC S      G+ +H   +K G    
Sbjct: 74  YARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRG 133

Query: 248 NLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMK 306
            +    S++DMY +   + +  + F+ M +K+++TW +++ G   +   SE + +F +M+
Sbjct: 134 EVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMR 193

Query: 307 SERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNIS 366
           +E   PN FTF S+++A A+  AL  GQ+VHA  V+ G   ++ + N+L++MYAKCG + 
Sbjct: 194 AEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVE 253

Query: 367 DSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS 426
           D++ +F+ M  RD+V+W ++M G   +    EA++LF E   +  +  +  +  V+  C+
Sbjct: 254 DAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCA 313

Query: 427 HAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWG 486
           +   +    +    +  +  +    +   + D   + G + +A  +        +   W 
Sbjct: 314 NLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWT 373

Query: 487 PLLGAC 492
            ++  C
Sbjct: 374 AIISGC 379


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 201/574 (35%), Positives = 321/574 (55%), Gaps = 39/574 (6%)

Query: 41  IPKGPSILATN--LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWT 98
           +P  P+  A    LI++Y     +  AR + D  P+R  V + V++ G T+ + H  A  
Sbjct: 47  LPSHPASAAVRVKLIQAYAACAALPAARAVLDASPDRTTVFFNVLLRGLTAASLHRDALL 106

Query: 99  VFVEMVR--NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDV 156
           +F  M    +   P+ +T    LK+C     L     +H    + GL+G+++V +S + +
Sbjct: 107 LFASMRPQGHACFPDHYTYPLALKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISM 166

Query: 157 YATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYS 216
           YA C    D+A  +F +M++++ VSW  +I+G+AH+G     + VF+E++       P +
Sbjct: 167 YARCG-RPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCP-KPDA 224

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
            ++A                          S LP M        R + ++     FDEM 
Sbjct: 225 GTMA--------------------------SILPSMGK-----ARVEDIALLKGVFDEMR 253

Query: 277 EKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ 335
            K LI+WN ++A Y  +    E + +F +M+ +   P+  T  +++ +C  ++ALS G++
Sbjct: 254 FKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKR 313

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
           +H  I RR +  ++ L NAL+DMYA CG + +++ +F  M  RD+V+WTS++  YG HGH
Sbjct: 314 IHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGH 373

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYG 454
           G+EAI+LF++M   G+ PD I F+A+L ACSHAGL+D G  YF SM +++++ P  E Y 
Sbjct: 374 GREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYA 433

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514
           C+VDLLGRAG ++EAY+ I  MP KP+E VWG LLGAC+ H   ++G LAA  +L L P 
Sbjct: 434 CMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPK 493

Query: 515 MMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSH 574
             G Y++LSNIYA  G+W + +  R +M   G KK  G+S  E+ D+V  F   D     
Sbjct: 494 QTGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTSHPQ 553

Query: 575 TQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           ++ +Y  L  L+R + E  Y P+++  +HD+E E
Sbjct: 554 SKMIYKKLSELLRRIREMGYNPEVEATLHDVEEE 587


>gi|78499697|gb|ABB45851.1| hypothetical protein [Eutrema halophilum]
          Length = 697

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 198/543 (36%), Positives = 302/543 (55%), Gaps = 4/543 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR- 105
            + + L+  Y   G I+++  +F EMP R+ V+WT  I G      H +    F +M R 
Sbjct: 132 FVGSALLDMYMRIGKIDKSCRVFAEMPFRNSVTWTAFITGLVHAGLHYEGLRYFSQMSRF 191

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
            +++ + F  +  LKAC  ++ +     +H   I +G    ++V NSL  +Y  C    D
Sbjct: 192 KQLSSDTFAFAIALKACADLRQVKYGREIHTHVIVKGFAAILWVANSLATMYTECGEMQD 251

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
             RL F  M  ++ V WT+LIT Y   G     +  F  M    V  N  +F+    ACA
Sbjct: 252 GLRL-FESMSERDVVLWTSLITAYIRIGQEEKAVNTFLLMRNSQVSPNEQTFASTFAACA 310

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           S   + +G+ +H  V   G G +L V NS++ MY     L  A+  F  M  +D+I+W+T
Sbjct: 311 SLSRLVWGEQLHGNVFSLGLGDSLSVSNSMMKMYSTCAKLDSASVLFQGMRCRDIISWST 370

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           II GY ++    EC   FS M+     P  F   S+++    +A L  G+QVHA  +  G
Sbjct: 371 IIGGYSQAAFGEECFKYFSWMRQAGPQPTDFALASLLSVSGIMAVLEQGRQVHALALYLG 430

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           L+ N  + +ALI+MY+KCG+I ++ K+F E    D+V+ T+M+ GY  HG  +EAI+LF+
Sbjct: 431 LEQNPTIRSALINMYSKCGSIIEASKVFEEKDRTDIVSLTAMINGYAEHGKCEEAIDLFE 490

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRA 463
           + +K   RPD + F++VLTACSH+G +D G +YF  M + YN+ P KE YGC+VDLL RA
Sbjct: 491 KSLKLSFRPDDVTFISVLTACSHSGQLDLGFQYFNLMQENYNMRPAKEHYGCMVDLLCRA 550

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           GR+ +A ++I  MP+K D+ VW  LL ACKE      G+ AA R+L+L P    T + L+
Sbjct: 551 GRLNDAEKMINEMPWKKDDVVWTTLLRACKEKGDVERGRRAAQRILELDPTSFTTLVTLA 610

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           NI+++ G W+E A  RK M+  G  KE G S I ++D+V  F +       ++ V  +LE
Sbjct: 611 NIHSSTGNWKEAANVRKDMKSKGVIKEPGWSSILIKDQVSAFASGSLSHPQSEDVCSILE 670

Query: 584 MLI 586
           +++
Sbjct: 671 LVV 673



 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 127/426 (29%), Positives = 232/426 (54%), Gaps = 5/426 (1%)

Query: 53  IKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE--VNP 110
           ++   D G +  AR +FD+MP RD+ SWT ++ GY +     +A  +F  M  +   V+ 
Sbjct: 35  LQDLIDSGKLRVARQVFDKMPRRDIKSWTAIMKGYVAATKPEEALILFSAMRVDPLGVSG 94

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           + + LS  LKAC    +++    +H  A K  L  S++V ++L+D+Y      +D +  V
Sbjct: 95  DTYVLSVALKACGQSSNIAYGESLHAYAEKTFLLSSVFVGSALLDMYMRIG-KIDKSCRV 153

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEM-LLEGVEMNPYSFSIAVRACASTGW 229
           F +M ++N V+WT  ITG  H+G  Y GL  F +M   + +  + ++F+IA++ACA    
Sbjct: 154 FAEMPFRNSVTWTAFITGLVHAGLHYEGLRYFSQMSRFKQLSSDTFAFAIALKACADLRQ 213

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           V +G+ IH  VI  GF + L V NS+  MY     + D  + F+ M+E+D++ W ++I  
Sbjct: 214 VKYGREIHTHVIVKGFAAILWVANSLATMYTECGEMQDGLRLFESMSERDVVLWTSLITA 273

Query: 290 YEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           Y + G  E  +N F  M++ + SPN  TF S  AACA+L+ L  G+Q+H  +   GL  +
Sbjct: 274 YIRIGQEEKAVNTFLLMRNSQVSPNEQTFASTFAACASLSRLVWGEQLHGNVFSLGLGDS 333

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           L+++N+++ MY+ C  +  +  +F  M  RD+++W++++ GY     G+E  + F  M +
Sbjct: 334 LSVSNSMMKMYSTCAKLDSASVLFQGMRCRDIISWSTIIGGYSQAAFGEECFKYFSWMRQ 393

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKE 468
           +G +P      ++L+      ++++G +         +  N  I   ++++  + G + E
Sbjct: 394 AGPQPTDFALASLLSVSGIMAVLEQGRQVHALALYLGLEQNPTIRSALINMYSKCGSIIE 453

Query: 469 AYELIK 474
           A ++ +
Sbjct: 454 ASKVFE 459



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 166/328 (50%), Gaps = 5/328 (1%)

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE--GVEMNPYSFSIAVRAC 224
           AR VF+ M  ++  SWT ++ GY  +      L +F  M ++  GV  + Y  S+A++AC
Sbjct: 47  ARQVFDKMPRRDIKSWTAIMKGYVAATKPEEALILFSAMRVDPLGVSGDTYVLSVALKAC 106

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
             +  +++G+ +HA   K    S++ V +++LDMY R   +  + + F EM  ++ +TW 
Sbjct: 107 GQSSNIAYGESLHAYAEKTFLLSSVFVGSALLDMYMRIGKIDKSCRVFAEMPFRNSVTWT 166

Query: 285 TIIAGYEKSG-SSECLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
             I G   +G   E L  FS+M + ++ S + F F   + ACA L  +  G+++H  ++ 
Sbjct: 167 AFITGLVHAGLHYEGLRYFSQMSRFKQLSSDTFAFAIALKACADLRQVKYGREIHTHVIV 226

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
           +G    L +AN+L  MY +CG + D  ++F  MS+RD+V WTS++  Y   G  ++A+  
Sbjct: 227 KGFAAILWVANSLATMYTECGEMQDGLRLFESMSERDVVLWTSLITAYIRIGQEEKAVNT 286

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           F  M  S V P+   F +   AC+    +  G +   ++    +  +  +   ++ +   
Sbjct: 287 FLLMRNSQVSPNEQTFASTFAACASLSRLVWGEQLHGNVFSLGLGDSLSVSNSMMKMYST 346

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLG 490
             ++  A  L + M  + D   W  ++G
Sbjct: 347 CAKLDSASVLFQGMRCR-DIISWSTIIG 373



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 116/267 (43%), Gaps = 40/267 (14%)

Query: 265 LSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERF--SPNCFTFTSII 321
           L  A Q FD+M  +D+ +W  I+ GY   +   E L +FS M+ +    S + +  +  +
Sbjct: 44  LRVARQVFDKMPRRDIKSWTAIMKGYVAATKPEEALILFSAMRVDPLGVSGDTYVLSVAL 103

Query: 322 AACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLV 381
            AC   + ++ G+ +HA   +  L  ++ + +AL+DMY + G I  S ++F+EM  R+ V
Sbjct: 104 KACGQSSNIAYGESLHAYAEKTFLLSSVFVGSALLDMYMRIGKIDKSCRVFAEMPFRNSV 163

Query: 382 TWTSMMIGYGAHGHGKEAIELFDEMVK-SGVRPDRIVFMAVLTAC--------------- 425
           TWT+ + G    G   E +  F +M +   +  D   F   L AC               
Sbjct: 164 TWTAFITGLVHAGLHYEGLRYFSQMSRFKQLSSDTFAFAIALKACADLRQVKYGREIHTH 223

Query: 426 --------------------SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
                               +  G + +GL+ F+SM++ +V     +    +  +G+  +
Sbjct: 224 VIVKGFAAILWVANSLATMYTECGEMQDGLRLFESMSERDVVLWTSLITAYIR-IGQEEK 282

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGAC 492
               + L+++    P+E  +     AC
Sbjct: 283 AVNTFLLMRNSQVSPNEQTFASTFAAC 309


>gi|115475988|ref|NP_001061590.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|38423978|dbj|BAD01706.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|38637396|dbj|BAD03655.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|113623559|dbj|BAF23504.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|215686971|dbj|BAG90841.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 819

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 189/548 (34%), Positives = 308/548 (56%), Gaps = 3/548 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y     +  AR LFD M  R++VSWT MI+GY   + + +A T+F  M +    P+
Sbjct: 262 LIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPD 321

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
            F  +S+L +C  + ++     +H   IK  LE   YV+N+L+D+YA C   +  AR VF
Sbjct: 322 GFACTSILNSCGSLAAIWQGRQIHAHVIKADLEADEYVKNALIDMYAKC-EHLTEARAVF 380

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           + +   + +S+  +I GY+ + +    + +F+ M    +  +  +F   +   +S   + 
Sbjct: 381 DALAEDDAISYNAMIEGYSKNRDLAEAVNIFQRMRFFSLRPSLLTFVSLLGVSSSQLAIE 440

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY- 290
             K IH  +IK G   +L   ++++D+Y +   ++DA   F+ +  KD++ WN++I G+ 
Sbjct: 441 LSKQIHGLIIKSGTSLDLYAASALIDVYSKCSLVNDAKTVFNMLHYKDMVIWNSMIFGHA 500

Query: 291 EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           +     E + +F+++     +PN FTF +++   +TLA++  GQQ HA I++ G+D +  
Sbjct: 501 QNEQGEEAIKLFNQLLLSGMAPNEFTFVALVTVASTLASMFHGQQFHAWIIKAGVDNDPH 560

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           ++NALIDMYAKCG I + + +F      D++ W SM+  Y  HGH +EA+++F  M ++ 
Sbjct: 561 VSNALIDMYAKCGFIKEGRMLFESTCGEDVICWNSMITTYAQHGHAEEALQVFRLMGEAE 620

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
           V P+ + F+ VL+AC+HAG V EGL +F SM ++Y++ P  E Y  VV+L GR+G++  A
Sbjct: 621 VEPNYVTFVGVLSACAHAGFVGEGLNHFNSMKSNYDIEPGIEHYASVVNLFGRSGKLHAA 680

Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529
            E I+ MP KP  +VW  LL AC       +G+ AA   L   P   G Y++LSNIYA++
Sbjct: 681 KEFIERMPIKPAAAVWRSLLSACHLFGNAEIGRYAAEMALLADPTDSGPYVLLSNIYASK 740

Query: 530 GKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHM 589
           G W +    R+ M   G+ KE G SWIEV  +V  FI   +     + +Y VL+ L   +
Sbjct: 741 GLWADVHNLRQQMDSSGTVKETGCSWIEVTKEVHTFIVRGREHPEAELIYSVLDELTSLI 800

Query: 590 NETAYEPD 597
               Y PD
Sbjct: 801 KNLGYVPD 808



 Score =  259 bits (661), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 157/531 (29%), Positives = 285/531 (53%), Gaps = 10/531 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            L   L++ Y + G + +AR LFD MP R++VSW  +I+ YT     + A ++FV   + 
Sbjct: 54  FLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGRDDCAISLFVAFQKA 113

Query: 107 EVN-PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
               PN F L+SVL+AC   K++S    VHG+A+K  L+ ++YV  +L+++YA     MD
Sbjct: 114 SCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLG-CMD 172

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A LVF+ +  +  V+W T+ITGYA  G G   L +F  M +EGV  + +  + AV AC+
Sbjct: 173 EAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSACS 232

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           + G++  G+ IH    +    ++  V+N ++D+YC+   LS A + FD M  ++L++W T
Sbjct: 233 ALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTT 292

Query: 286 IIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I+GY + S ++E + MF  M    + P+ F  TSI+ +C +LAA+  G+Q+HA +++  
Sbjct: 293 MISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIKAD 352

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           L+ +  + NALIDMYAKC ++++++ +F  +++ D +++ +M+ GY  +    EA+ +F 
Sbjct: 353 LEADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVNIFQ 412

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
            M    +RP  + F+++L   S    ++   +    +     + +      ++D+  +  
Sbjct: 413 RMRFFSLRPSLLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTSLDLYAASALIDVYSKCS 472

Query: 465 RVKEAYELIKSMPFKPDESVWGPLL--GACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
            V +A  +   + +K D  +W  ++   A  E     +     L +  + PN   T++ L
Sbjct: 473 LVNDAKTVFNMLHYK-DMVIWNSMIFGHAQNEQGEEAIKLFNQLLLSGMAPNEF-TFVAL 530

Query: 523 SNIYAAEGKWEEFAKFRK--IMRGMGSKKEVGMSWIEVRDKVCGFIANDKM 571
             + +         +F    I  G+ +   V  + I++  K CGFI   +M
Sbjct: 531 VTVASTLASMFHGQQFHAWIIKAGVDNDPHVSNALIDMYAK-CGFIKEGRM 580



 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 133/449 (29%), Positives = 241/449 (53%), Gaps = 3/449 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + T LI  Y   G ++EA  +F  +P R  V+W  +I GY    C   A  +F  M    
Sbjct: 157 VGTALINLYAKLGCMDEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEG 216

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V P+ F L+S + AC  +  L     +HG A +   E    V N L+D+Y  C   +  A
Sbjct: 217 VRPDRFVLASAVSACSALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCS-RLSAA 275

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R +F+ M+++N VSWTT+I+GY  +      + +F  M   G + + ++ +  + +C S 
Sbjct: 276 RKLFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSL 335

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  G+ IHA VIK    ++  V N+++DMY + + L++A   FD + E D I++N +I
Sbjct: 336 AAIWQGRQIHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMI 395

Query: 288 AGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            GY K+   +E +N+F +M+     P+  TF S++   ++  A+   +Q+H  I++ G  
Sbjct: 396 EGYSKNRDLAEAVNIFQRMRFFSLRPSLLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTS 455

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            +L  A+ALID+Y+KC  ++D++ +F+ +  +D+V W SM+ G+  +  G+EAI+LF+++
Sbjct: 456 LDLYAASALIDVYSKCSLVNDAKTVFNMLHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQL 515

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
           + SG+ P+   F+A++T  S    +  G ++   +    V+ +  +   ++D+  + G +
Sbjct: 516 LLSGMAPNEFTFVALVTVASTLASMFHGQQFHAWIIKAGVDNDPHVSNALIDMYAKCGFI 575

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEH 495
           KE   L +S     D   W  ++    +H
Sbjct: 576 KEGRMLFES-TCGEDVICWNSMITTYAQH 603



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/424 (24%), Positives = 209/424 (49%), Gaps = 12/424 (2%)

Query: 114 TLSSVLKAC-----KGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
           +L+ VL +C       ++ L+ A  +H  A   G    +++ N L+  Y+     + +AR
Sbjct: 17  SLARVLLSCLPTGGDRLRRLNPA--IHARATVAGRLDDLFLTNLLLRGYSNLG-RLRDAR 73

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEM-NPYSFSIAVRACAST 227
            +F+ M  +N VSW ++I+ Y   G     + +F        E+ N +  +  +RAC  +
Sbjct: 74  HLFDRMPHRNLVSWGSVISMYTQHGRDDCAISLFVAFQKASCEVPNEFLLASVLRACTQS 133

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             VS G+ +H   +K    +N+ V  +++++Y +  C+ +A   F  +  +  +TWNT+I
Sbjct: 134 KAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLVFHALPVRTPVTWNTVI 193

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            GY + G     L +F +M  E   P+ F   S ++AC+ L  L  G+Q+H    R   +
Sbjct: 194 TGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSACSALGFLEGGRQIHGYAYRSATE 253

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            + ++ N LID+Y KC  +S ++K+F  M  R+LV+WT+M+ GY  +    EAI +F  M
Sbjct: 254 TDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNM 313

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
            ++G +PD     ++L +C     + +G +    +   ++  ++ +   ++D+  +   +
Sbjct: 314 TQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIKADLEADEYVKNALIDMYAKCEHL 373

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPN-LGKLAALRVLDLKPNMMGTYIILSNI 525
            EA  +  ++      S    + G  K   L   +     +R   L+P+++ T++ L  +
Sbjct: 374 TEARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVNIFQRMRFFSLRPSLL-TFVSLLGV 432

Query: 526 YAAE 529
            +++
Sbjct: 433 SSSQ 436


>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Vitis vinifera]
          Length = 755

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 199/558 (35%), Positives = 311/558 (55%), Gaps = 6/558 (1%)

Query: 44  GPSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           G  I+A N LI  Y    LI +A  +F  M  RD++SW  MIAG++      +A   F E
Sbjct: 196 GAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKE 255

Query: 103 MVRNEVN-PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
           M+   V  PN F   SV  AC  +        +HGM+IK GL   ++   SL D+YA C 
Sbjct: 256 MLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCG 315

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
           + +  AR+VF  +   + V+W  +I G+A+ G+    +  F +M  +G+  +  +    +
Sbjct: 316 L-LSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLL 374

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDL 280
            AC S   +  G  +H  + K G   ++PV N++L MY +   L DA  +F+EM    DL
Sbjct: 375 CACTSPSELYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADL 434

Query: 281 ITWNTII-AGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           ++WN I+ A      + E   +   M   +  P+  T T+++ A A   ++  G QVH  
Sbjct: 435 VSWNAILTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCY 494

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
            ++ GL+ + ++ N LID+YAKCG++  + KIF  M + D+V+W+S+++GY   G+G+EA
Sbjct: 495 ALKTGLNCDTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEA 554

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVD 458
           ++LF  M +  V+P+ + F+ VLTACSH GLV+EG K + +M  ++ + P +E   C+VD
Sbjct: 555 LKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCMVD 614

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518
           LL RAG + EA   I  M F PD  VW  LL ACK H   ++GK AA  +L + P+    
Sbjct: 615 LLARAGCLNEAEGFIHQMAFDPDIVVWKTLLAACKTHGNVDVGKRAAENILKIDPSNSAA 674

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
           +++L NIYA++G WE+ A+ R +M+  G +K  G SWIEV+D++  F   D +      +
Sbjct: 675 HVLLCNIYASKGNWEDVARLRSLMKQRGVRKVPGQSWIEVKDRIHVFFVEDSLHPERNKI 734

Query: 579 YGVLEMLIRHMNETAYEP 596
           Y +LE L+  M +  Y P
Sbjct: 735 YTMLEELLLQMLDAGYVP 752



 Score =  239 bits (609), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 150/501 (29%), Positives = 249/501 (49%), Gaps = 10/501 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L  +++  Y     +++A+ +FD MPER+VVSWT +IAGY+       A   + +M+++ 
Sbjct: 100 LQNHILNMYGKCKSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSG 159

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V P+ FT  S++KAC  +  +     +H   +K      I  +N+L+ +Y    + +D A
Sbjct: 160 VMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIID-A 218

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEM-NPYSFSIAVRACAS 226
             VF+ M  ++ +SW ++I G++  G     L  FKEML +GV + N + F     AC+S
Sbjct: 219 LDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSS 278

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
                +G+ +H   IK G G ++    S+ DMY +   LS A   F ++   DL+ WN I
Sbjct: 279 LLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAI 338

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           IAG+   G + E +  FS+M+ +   P+  T  S++ AC + + L  G QVH  I + GL
Sbjct: 339 IAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQVHGYINKMGL 398

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           D ++ + N L+ MYAKC  + D+   F EM  + DLV+W +++     H   +E   L  
Sbjct: 399 DLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMRHDQAEEVFRLLK 458

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
            M  S  RPD I    VL A +    ++ G +         +N +  +   ++DL  + G
Sbjct: 459 LMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNCDTSVTNGLIDLYAKCG 518

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKE--HRLPNLGKLAALRVLDLKPN---MMGTY 519
            +K A+++  SM   PD   W  L+    +  +    L     +R LD+KPN    +G  
Sbjct: 519 SLKTAHKIFDSM-INPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVL 577

Query: 520 IILSNIYAAEGKWEEFAKFRK 540
              S++   E  W+ +    K
Sbjct: 578 TACSHVGLVEEGWKLYGTMEK 598



 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 122/426 (28%), Positives = 226/426 (53%), Gaps = 17/426 (3%)

Query: 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFND 173
           T + ++ AC  ++SL +   +H   +K      + ++N ++++Y  C  S+ +A+ VF+ 
Sbjct: 65  TYAYLISACSYLRSLEHGKKIHDHMLKSKSHPDLTLQNHILNMYGKC-KSLKDAQKVFDA 123

Query: 174 MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG 233
           M  +N VSWT++I GY+ +G G   L  + +ML  GV  + ++F   ++AC+S G +  G
Sbjct: 124 MPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLG 183

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
           + +HA V+K  FG+++   N+++ MY + + + DA   F  M  +DLI+W ++IAG+ + 
Sbjct: 184 RQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQL 243

Query: 294 GSS-ECLNMFSKMKSE-RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLAL 351
           G   E L  F +M  +  + PN F F S+ +AC++L     G+Q+H   ++ GL  ++  
Sbjct: 244 GYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFA 303

Query: 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411
             +L DMYAKCG +S ++ +F ++   DLV W +++ G+   G  KEAI  F +M   G+
Sbjct: 304 GCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGL 363

Query: 412 RPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471
            PD I   ++L AC+    + +G++    +N   ++ +  +   ++ +  +   +++A  
Sbjct: 364 IPDEITVRSLLCACTSPSELYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIF 423

Query: 472 LIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDL------KPNMMGTYIILSNI 525
             + M    D   W  +L AC  H           R+L L      +P+    YI L+N+
Sbjct: 424 FFEEMRCNADLVSWNAILTACMRHDQAE----EVFRLLKLMCISQHRPD----YITLTNV 475

Query: 526 YAAEGK 531
             A  +
Sbjct: 476 LGASAE 481



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 130/256 (50%), Gaps = 18/256 (7%)

Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG 294
           +I A   + GF +N  V  ++L    +      +N+Y   + ++ L  +N  I  +E   
Sbjct: 1   MIKALRPQVGFATN-NVKETVLS---KLRAEQSSNEYITSLCKQKL--FNEAIKAFE--- 51

Query: 295 SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
                  F + K+  F     T+  +I+AC+ L +L  G+++H  +++     +L L N 
Sbjct: 52  -------FLQKKTG-FCLTLSTYAYLISACSYLRSLEHGKKIHDHMLKSKSHPDLTLQNH 103

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
           +++MY KC ++ D+QK+F  M +R++V+WTS++ GY  +G G  A+E + +M++SGV PD
Sbjct: 104 ILNMYGKCKSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPD 163

Query: 415 RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
           +  F +++ ACS  G +  G +    +       +      ++ +  ++  + +A ++  
Sbjct: 164 QFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFS 223

Query: 475 SMPFKPDESVWGPLLG 490
            M  + D   WG ++ 
Sbjct: 224 RMATR-DLISWGSMIA 238


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 205/596 (34%), Positives = 334/596 (56%), Gaps = 42/596 (7%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           ++  +FD   +  A ++F+ +PE + + W +M  G+   +    A  ++V M+   + PN
Sbjct: 17  ILSPHFDG--LPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPN 74

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA------------- 158
            FT   +LK+C   K+      +HG  +K G +  +YV  SL+ +YA             
Sbjct: 75  FFTFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFD 134

Query: 159 ----------TCCIS-------MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGV 201
                     T  I+       +++A+ +F+++  K+ VSW  +I+GYA +GN    L +
Sbjct: 135 RSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALEL 194

Query: 202 FKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR 261
           FKEM+   V+ +  + +  V ACA +G +  G+ +H+ +  HGFGSNL ++N+++D+Y +
Sbjct: 195 FKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSK 254

Query: 262 FDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSI 320
              +  A +  + ++ KD+I+WNT+I GY       E L +F +M     +PN  T  SI
Sbjct: 255 CGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSI 314

Query: 321 IAACATLAALSCGQQVHAGIVRRGLDGNL-----ALANALIDMYAKCGNISDSQKIF-SE 374
           + ACA L A+  G+ +H  I ++ L G +     +L  +LIDMYAKCG+I  + ++  S 
Sbjct: 315 LPACAHLGAIDIGRWIHVYIDKK-LKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSS 373

Query: 375 MSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434
             +R L TW +M+ G+  HG    A ++F  M K+G+ PD I F+ +L+ACSH+G++D G
Sbjct: 374 AFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLG 433

Query: 435 LKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACK 493
              F+SM  DYN+ P  E YGC++DLLG +G  KEA E+I +MP +PD  +W  LL ACK
Sbjct: 434 RNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACK 493

Query: 494 EHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEV-G 552
            H    LG+  A +++ ++P   G+Y++LSNIYA  GKW E  K R ++   G KK+V G
Sbjct: 494 IHGNLELGESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPG 553

Query: 553 MSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
            S IE+   V  FI  DK+    + +YG+LE +   + E  + PD   ++ ++E E
Sbjct: 554 CSSIEIDSVVHEFIIGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEE 609



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 116/419 (27%), Positives = 201/419 (47%), Gaps = 22/419 (5%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T LI  Y   G IE A+ +FDE+P +DVVSW  MI+GY     + +A  +F EM++  V 
Sbjct: 145 TALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVK 204

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P+  T+++V+ AC    S+     VH      G   ++ + N+L+D+Y+ C   ++ A  
Sbjct: 205 PDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCG-EVETACE 263

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           +   +  K+ +SW TLI GY H       L +F+EML  G   N  +    + ACA  G 
Sbjct: 264 LLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGA 323

Query: 230 VSFGKLIHAAVIKHGFGSNL----PVMNSILDMYCRFDCLSDANQYFDEMT-EKDLITWN 284
           +  G+ IH  + K   G  +     +  S++DMY +   +  A Q  D     + L TWN
Sbjct: 324 IDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWN 383

Query: 285 TIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +I G+   G ++   ++FS+M+     P+  TF  +++AC+    L  G+ +   + + 
Sbjct: 384 AMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQD 443

Query: 344 -GLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEAIE 401
             +   L     +ID+    G   +++++ + M  + D V W S++     HG+    +E
Sbjct: 444 YNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGN----LE 499

Query: 402 LFDEMVKSGVR-----PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455
           L +   K  ++     P   V ++ + A   AG  +E  K    +ND  +   K++ GC
Sbjct: 500 LGESFAKKLIKIEPENPGSYVLLSNIYAT--AGKWNEVXKIRTLLNDKGM--KKKVPGC 554


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 205/623 (32%), Positives = 344/623 (55%), Gaps = 43/623 (6%)

Query: 22  IKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWT 81
           +KQ+   + ++ + SDP    K  +I A +   S      +E AR +FDE+P+ +  +W 
Sbjct: 47  LKQTHAHMIRTGMFSDPYSASKLFAIAALSSFAS------LEYARKVFDEIPQPNSFTWN 100

Query: 82  VMIAGYTSFNCHNQAWTVFVEMVRNEVN--PNAFTLSSVLKACKGMKSLSNAALVHGMAI 139
            +I  Y S      +   F++MV +E    PN +T   ++KA   + SLS    +HGMAI
Sbjct: 101 TLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAI 160

Query: 140 KEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGL 199
           K  +   ++V NSL+  Y +C   +D+A  VF  +K K+ VSW ++I G+   G+    L
Sbjct: 161 KSAVGSDVFVANSLIHCYFSCG-DLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKAL 219

Query: 200 GVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMY 259
            +FK+M  E V+ +  +    + ACA    + FG+ + + + ++    NL + N++LDMY
Sbjct: 220 ELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMY 279

Query: 260 CRFDCLSDANQYFDEMTEKD-------------------------------LITWNTIIA 288
            +   + DA + FD M EKD                               ++ WN +I+
Sbjct: 280 TKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALIS 339

Query: 289 GYEKSGS-SECLNMFSKMKSER-FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            YE++G  +E L +F +++ ++    N  T  S ++ACA + AL  G+ +H+ I + G+ 
Sbjct: 340 AYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIK 399

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            N  + +ALI MY+KCG++  ++++F+ +  RD+  W++M+ G   HG G EA+++F +M
Sbjct: 400 MNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKM 459

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGR 465
            ++ V+P+ + F  V  ACSH GLVDE    F  M + Y + P  + Y C+VD+LGR+G 
Sbjct: 460 QEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKHYACIVDVLGRSGY 519

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           +++A + I++MP  P  SVWG LLGACK H   +L ++A  R+L+L+P   G +++LSNI
Sbjct: 520 LEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMACTRLLELEPRNDGAHVLLSNI 579

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           YA  GKW+  ++ RK MR  G KKE G S IE+   +  F++ D     ++ VYG L  +
Sbjct: 580 YAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEV 639

Query: 586 IRHMNETAYEPDIDCLIHDLEGE 608
           +  +    YEP++  ++  +E E
Sbjct: 640 MEKLKSNGYEPEMSHVLQIIEEE 662


>gi|147812109|emb|CAN61522.1| hypothetical protein VITISV_010801 [Vitis vinifera]
          Length = 674

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 186/530 (35%), Positives = 310/530 (58%), Gaps = 7/530 (1%)

Query: 68  LFDEMPERDVVSWTVMIAGYTSFNCH----NQAWTVFVEMVRNEVNPNAFTLSSVLKACK 123
           +FDEMP ++VVSW  +I G    NC        +  F +MV   + PN  TL+ +L+A  
Sbjct: 130 MFDEMPLKNVVSWNTLICGVVEGNCKFALVRLGFHCFRQMVLEMMAPNCITLNGLLRASI 189

Query: 124 GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWT 183
            +  +     +H   +K G + + +V ++L+D YA   + +D A+  F+++  ++ V W 
Sbjct: 190 ELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGL-VDEAQSAFDEVSSRDLVLWN 248

Query: 184 TLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH 243
            +++ YA +G      GVFK M LEGV+ + ++F+  + +C   G    GK +H  +I+ 
Sbjct: 249 VMVSCYALNGVQGKAFGVFKLMRLEGVKGDXFTFTSMINSCGVLGSCGLGKQVHGLIIRL 308

Query: 244 GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMF 302
            F  ++ V ++++DMY + + + DA + FD M  K++++W T+  GY + G   E + + 
Sbjct: 309 SFDLDVLVASALVDMYSKNENIEDARKAFDGMJVKNIVSWTTMXVGYGQHGDGKEXMRLL 368

Query: 303 SKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362
            +M      P+     SI+++C  L+A S   QVHA +V  G +  L++ANAL+  Y+KC
Sbjct: 369 QEMIRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVENGFEAFLSIANALVSAYSKC 428

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
           G+I  + + FS +++ D+++WTS+M  Y  HG  K+ +++F++++ S VRPD++ F+ VL
Sbjct: 429 GSIGSAFQSFSSVAEPDIISWTSLMGAYAFHGLSKQGVDVFEKILSSNVRPDKVAFLGVL 488

Query: 423 TACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481
           +AC+H G V EGL YF  M N Y + P+ E Y  ++DLLGRAG + EA  L+ SMP +P 
Sbjct: 489 SACAHGGFVLEGLHYFNLMINVYQIMPDSEHYTSIIDLLGRAGFLDEAVNLLTSMPVEPR 548

Query: 482 ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKI 541
               G  LGACK +R   L + A+ ++  ++PN  G Y ++SN+YA+ G W + A+ RK+
Sbjct: 549 SDTLGAFLGACKVYRNVGLARWASEKLFVMEPNEPGKYSLMSNMYASVGHWFDVARVRKL 608

Query: 542 MRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNE 591
           MR     K  G SW+E   +V  F++ DK       VYG+L++L+R M E
Sbjct: 609 MRERCDFKVPGCSWMETAGEVHTFVSRDKTHPRAVQVYGMLDLLVRLMKE 658



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 122/415 (29%), Positives = 212/415 (51%), Gaps = 9/415 (2%)

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMK 175
           S  LK    +  L     +H   IK G    + ++N ++ VY  C    D  ++ F++M 
Sbjct: 77  SHALKISAKLGFLHGGKQLHAHVIKLGXCNLLSLQNQVLHVYVKCKEFNDVCKM-FDEMP 135

Query: 176 WKNDVSWTTLITGYAHSGNGYG----GLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
            KN VSW TLI G       +     G   F++M+LE +  N  + +  +RA      V 
Sbjct: 136 LKNVVSWNTLICGVVEGNCKFALVRLGFHCFRQMVLEMMAPNCITLNGLLRASIELNDVG 195

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
             + +H  ++K GF SN  V ++++D Y +F  + +A   FDE++ +DL+ WN +++ Y 
Sbjct: 196 ICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYA 255

Query: 292 KSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
            +G   +   +F  M+ E    + FTFTS+I +C  L +   G+QVH  I+R   D ++ 
Sbjct: 256 LNGVQGKAFGVFKLMRLEGVKGDXFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVL 315

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           +A+AL+DMY+K  NI D++K F  M  +++V+WT+M +GYG HG GKE + L  EM++  
Sbjct: 316 VASALVDMYSKNENIEDARKAFDGMJVKNIVSWTTMXVGYGQHGDGKEXMRLLQEMIRVY 375

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470
             PD +   ++L++C +     E ++    + +        I   +V    + G +  A+
Sbjct: 376 TYPDELALASILSSCGNLSATSEVVQVHAYVVENGFEAFLSIANALVSAYSKCGSIGSAF 435

Query: 471 ELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVL--DLKPNMMGTYIILS 523
           +   S+  +PD   W  L+GA   H L   G     ++L  +++P+ +    +LS
Sbjct: 436 QSFSSVA-EPDIISWTSLMGAYAFHGLSKQGVDVFEKILSSNVRPDKVAFLGVLS 489



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 110/405 (27%), Positives = 194/405 (47%), Gaps = 37/405 (9%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + + L+ SY   GL++EA++ FDE+  RD+V W VM++ Y       +A+ VF  M   
Sbjct: 214 FVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGVQGKAFGVFKLMRLE 273

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V  + FT +S++ +C  + S      VHG+ I+   +  + V ++L+D+Y+    ++++
Sbjct: 274 GVKGDXFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVASALVDMYSK-NENIED 332

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR  F+ M  KN VSWTT+  GY   G+G   + + +EM+      +  + +  + +C +
Sbjct: 333 ARKAFDGMJVKNIVSWTTMXVGYGQHGDGKEXMRLLQEMIRVYTYPDELALASILSSCGN 392

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
               S    +HA V+++GF + L + N+++  Y +   +  A Q F  + E D+I+W ++
Sbjct: 393 LSATSEVVQVHAYVVENGFEAFLSIANALVSAYSKCGSIGSAFQSFSSVAEPDIISWTSL 452

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           +  Y   G S + +++F K+ S    P+   F  +++ACA           H G V  GL
Sbjct: 453 MGAYAFHGLSKQGVDVFEKILSSNVRPDKVAFLGVLSACA-----------HGGFVLEGL 501

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
                  N +I++Y     + DS+             +TS++   G  G   EA+ L   
Sbjct: 502 H----YFNLMINVYQI---MPDSEH------------YTSIIDLLGRAGFLDEAVNLLTS 542

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK 450
           M    V P      A L AC     V  GL  + S   + + PN+
Sbjct: 543 M---PVEPRSDTLGAFLGACKVYRNV--GLARWASEKLFVMEPNE 582



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 137/271 (50%), Gaps = 6/271 (2%)

Query: 215 YSFSI-AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFD 273
           +SFS  A++  A  G++  GK +HA VIK G  + L + N +L +Y +    +D  + FD
Sbjct: 73  HSFSSHALKISAKLGFLHGGKQLHAHVIKLGXCNLLSLQNQVLHVYVKCKEFNDVCKMFD 132

Query: 274 EMTEKDLITWNTIIAGYEKSGSSECL-----NMFSKMKSERFSPNCFTFTSIIAACATLA 328
           EM  K++++WNT+I G  +      L     + F +M  E  +PNC T   ++ A   L 
Sbjct: 133 EMPLKNVVSWNTLICGVVEGNCKFALVRLGFHCFRQMVLEMMAPNCITLNGLLRASIELN 192

Query: 329 ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMI 388
            +   +Q+H  I++ G D N  + +AL+D YAK G + ++Q  F E+S RDLV W  M+ 
Sbjct: 193 DVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVS 252

Query: 389 GYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP 448
            Y  +G   +A  +F  M   GV+ D   F +++ +C   G    G +    +   + + 
Sbjct: 253 CYALNGVQGKAFGVFKLMRLEGVKGDXFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDL 312

Query: 449 NKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
           +  +   +VD+  +   +++A +    M  K
Sbjct: 313 DVLVASALVDMYSKNENIEDARKAFDGMJVK 343


>gi|225435444|ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g40720-like [Vitis vinifera]
          Length = 854

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 191/559 (34%), Positives = 312/559 (55%), Gaps = 9/559 (1%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+  Y + G +E +  LF+ +P RD   W  MI+ Y +F CH +A  +F+ M    V  +
Sbjct: 296 LLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKD 355

Query: 112 AFTLSSVLKACKGMKS-LSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNARL 169
             T+  +L  C+ + S L     +H   IK G+     + N+L+ +Y    C+  ++ + 
Sbjct: 356 ERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMRIDASLGNALLSMYTELNCV--ESVQK 413

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           +F+ MK  + +SW T+I   A +        +F+ M    ++ N Y+    + AC     
Sbjct: 414 IFDRMKGVDIISWNTMILALARNTLRAQACELFERMRESEIKPNSYTIISILAACEDVTC 473

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           + FG+ IH  V+KH    N P+  ++ DMY      + A   F+   ++DLI+WN +IA 
Sbjct: 474 LDFGRSIHGYVMKHSIEINQPLRTALADMYMNCGDEATARDLFEGCPDRDLISWNAMIAS 533

Query: 290 YEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG--LD 346
           Y K+  + + L +F +M SE   PN  T  +++++   LA L  GQ +HA + RRG  L 
Sbjct: 534 YVKNNQAHKALLLFHRMISEA-EPNSVTIINVLSSFTHLATLPQGQSLHAYVTRRGFSLG 592

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            +L+LANA I MYA+CG++  ++ IF  +  R++++W +M+ GYG +G G +A+  F +M
Sbjct: 593 LDLSLANAFITMYARCGSLQSAENIFKTLPKRNIISWNAMIAGYGMNGRGSDAMLAFSQM 652

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGR 465
           ++ G RP+ + F++VL+ACSH+G ++ GL+ F SM  D+NV P    Y C+VDLL R G 
Sbjct: 653 LEDGFRPNGVTFVSVLSACSHSGFIEMGLQLFHSMVQDFNVTPELVHYSCIVDLLARGGC 712

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           + EA E I SMP +PD SVW  LL +C+ +      K    ++  L+P   G Y++LSN+
Sbjct: 713 IDEAREFIDSMPIEPDASVWRALLSSCRAYSDAKQAKTIFEKLDKLEPMNAGNYVLLSNV 772

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           YA  G W E  + R  ++  G +K  G+SWI V+++V  F A D+    +  +Y  L +L
Sbjct: 773 YATAGLWLEVRRIRTWLKEKGLRKPPGISWIIVKNQVHCFSAGDRSHPQSDKIYAKLSIL 832

Query: 586 IRHMNETAYEPDIDCLIHD 604
           +  M ET Y+PD+  + H+
Sbjct: 833 LSSMRETGYDPDLRWVFHE 851



 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 135/481 (28%), Positives = 254/481 (52%), Gaps = 7/481 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + T ++  Y   G +E+AR +FD M +RDVV W  M+ GY  + C+ +A  +  EM R  
Sbjct: 90  VGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMGREN 149

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGL-EGSIYVENSLMDVYATCCISMDN 166
           + PN+ T+ ++L AC+G   L     VHG  ++ G+ + + +V  +L+  Y      M  
Sbjct: 150 LRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLR--FDMRV 207

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
             L+F+ M  +N VSW  +I+GY   G+ +  L +F +ML++ V+ +  +  +AV+ACA 
Sbjct: 208 LPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAE 267

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G +  GK IH   IK  F  +L ++N++L+MY     L  ++Q F+ +  +D   WN++
Sbjct: 268 LGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSM 327

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAA-LSCGQQVHAGIVRRG 344
           I+ Y   G   E +++F +M+SE    +  T   +++ C  LA+ L  G+ +HA +++ G
Sbjct: 328 ISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSG 387

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           +  + +L NAL+ MY +   +   QKIF  M   D+++W +M++    +    +A ELF+
Sbjct: 388 MRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFE 447

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
            M +S ++P+    +++L AC     +D G      +  +++  N+ +   + D+    G
Sbjct: 448 RMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCG 507

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVL-DLKPNMMGTYIILS 523
               A +L +  P + D   W  ++ +  ++   +   L   R++ + +PN +    +LS
Sbjct: 508 DEATARDLFEGCPDR-DLISWNAMIASYVKNNQAHKALLLFHRMISEAEPNSVTIINVLS 566

Query: 524 N 524
           +
Sbjct: 567 S 567



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 113/466 (24%), Positives = 207/466 (44%), Gaps = 41/466 (8%)

Query: 75  RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALV 134
           +D   W  +I    +        + + +M    V PN  TL  VLKAC    ++     +
Sbjct: 16  KDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKSI 75

Query: 135 HGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGN 194
           H       L   + V  +++D Y  C   +++AR VF+ M  ++ V W  ++ GY   G 
Sbjct: 76  HRSIQGTDLMDDVRVGTAVVDFYCKCGF-VEDARCVFDAMSDRDVVLWNAMVYGYVGWGC 134

Query: 195 GYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG-FGSNLPVMN 253
               + + +EM  E +  N  +    + AC     +  G+ +H   +++G F SN  V  
Sbjct: 135 YEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVAT 194

Query: 254 SILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSP 312
           +++  Y RFD +      FD M  +++++WN +I+GY   G   + L +F +M  +    
Sbjct: 195 ALIGFYLRFD-MRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKF 253

Query: 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIF 372
           +C T    + ACA L +L  G+Q+H   ++     +L + NAL++MY+  G++  S ++F
Sbjct: 254 DCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLF 313

Query: 373 SEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS------ 426
             + +RD   W SM+  Y A G  +EA++LF  M   GV+ D    + +L+ C       
Sbjct: 314 ESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGL 373

Query: 427 ------HAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK------------- 467
                 HA ++  G++   S+ +  ++   E+  CV  +     R+K             
Sbjct: 374 LKGKSLHAHVIKSGMRIDASLGNALLSMYTEL-NCVESVQKIFDRMKGVDIISWNTMILA 432

Query: 468 -----------EAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGK 502
                      E +E ++    KP+      +L AC++    + G+
Sbjct: 433 LARNTLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGR 478



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 9/193 (4%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           LA   I  Y   G ++ A  +F  +P+R+++SW  MIAGY      + A   F +M+ + 
Sbjct: 597 LANAFITMYARCGSLQSAENIFKTLPKRNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDG 656

Query: 108 VNPNAFTLSSVLKACKGMKSLS-NAALVHGMAIKEGLEGSIYVENSLMDVYAT-CCISMD 165
             PN  T  SVL AC     +     L H M     +   +   + ++D+ A   CI  D
Sbjct: 657 FRPNGVTFVSVLSACSHSGFIEMGLQLFHSMVQDFNVTPELVHYSCIVDLLARGGCI--D 714

Query: 166 NARLVFNDMKWKNDVS-WTTLITGYAHSGNGYGGLGVFKEMLLEGVE-MNPYSFSIAVRA 223
            AR   + M  + D S W  L++      +      +F++  L+ +E MN  ++ +    
Sbjct: 715 EAREFIDSMPIEPDASVWRALLSSCRAYSDAKQAKTIFEK--LDKLEPMNAGNYVLLSNV 772

Query: 224 CASTG-WVSFGKL 235
            A+ G W+   ++
Sbjct: 773 YATAGLWLEVRRI 785


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 193/503 (38%), Positives = 299/503 (59%), Gaps = 7/503 (1%)

Query: 101 VEMVRN-EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
           ++++ N  + P+    + +LK C  +  L    LVH   +       + ++NS++ +YA 
Sbjct: 79  LDLINNGSLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAK 138

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSG---NGYGGLGVFKEMLLEGVEMNPYS 216
           C  S++ AR VF++M  K+ V+WT++ITGY+  G   +    L +F EM+ +G+  N ++
Sbjct: 139 CG-SLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFA 197

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
            S  V+ C   G    GK IH    K+GF  N+ V +S++DMY R   L ++   FDE+ 
Sbjct: 198 LSSLVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELE 257

Query: 277 EKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ 335
            K+ ++WN +I+G+ + G   E L +F KM+ E F    FT+++++ + +T  +L  G+ 
Sbjct: 258 SKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKW 317

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
           +HA +++ G      + N L+ MYAK GNI D++K+F  +   D+V+  SM+IGY  HG 
Sbjct: 318 LHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGL 377

Query: 396 GKEAIELFDEMVK-SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG 454
           GKEA+ELF+EM+    + P+ I F++VLTACSHAGL+DEGL YF+ M  Y + P    Y 
Sbjct: 378 GKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKKYGLEPKLSHYT 437

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514
            VVDL GRAG + +A   I+ MP +P+ ++WG LLGA K H+   +G  AA +VL+L P 
Sbjct: 438 TVVDLFGRAGLLDQAKSFIEEMPIEPNATIWGALLGASKMHKNTEMGAYAAQKVLELDPF 497

Query: 515 MMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSH 574
             G + +LSNIYA+ G+W++ AK RK M+  G KKE   SW+E+ + V  F AND     
Sbjct: 498 YPGAHTLLSNIYASAGQWKDVAKVRKEMKDSGLKKEPACSWVEIENSVHIFSANDISHPQ 557

Query: 575 TQYVYGVLEMLIRHMNETAYEPD 597
              VY + E L + + E  Y PD
Sbjct: 558 KNKVYEMWENLNQKIKEIGYVPD 580


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 201/585 (34%), Positives = 313/585 (53%), Gaps = 35/585 (5%)

Query: 59  EGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSV 118
            G +  A +LF  +   + V W  MI G +S      A   +V M+ +   PN +T  S+
Sbjct: 75  HGDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSI 134

Query: 119 LKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA-------------------- 158
            K+C  ++       VH   +K GLE + +V  SL+++YA                    
Sbjct: 135 FKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDA 194

Query: 159 ---TCCIS-------MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE 208
              T  I+       +D AR +F+++  ++ VSW  +I+GYA SG     +  F+EM   
Sbjct: 195 VSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRA 254

Query: 209 GVEMNPYSFSIAVRACASTGW-VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSD 267
            V  N  +    + ACA +G  +  G  + + +   G GSN+ ++N ++DMY +   L +
Sbjct: 255 KVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEE 314

Query: 268 ANQYFDEMTEKDLITWNTIIAGYEK-SGSSECLNMFSKMKSERFSPNCFTFTSIIAACAT 326
           A+  F+++ +K++++WN +I GY   S   E L +F +M      PN  TF SI+ ACA 
Sbjct: 315 ASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACAN 374

Query: 327 LAALSCGQQVHAGIVR--RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWT 384
           L AL  G+ VHA + +  + +   +AL  +LIDMYAKCG+++ +++IF  M+ + L TW 
Sbjct: 375 LGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWN 434

Query: 385 SMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-ND 443
           +M+ G+  HGH   A+ LF  M   G  PD I F+ VLTAC HAGL+  G +YF SM  D
Sbjct: 435 AMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQD 494

Query: 444 YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKL 503
           Y V+P    YGC++DL GRAG   EA  L+K+M  KPD ++W  LLGAC+ HR   L + 
Sbjct: 495 YKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAES 554

Query: 504 AALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVC 563
            A  + +L+P     Y++LSNIYA  G+WE+ AK R  +     KK  G S IEV   V 
Sbjct: 555 VAKHLFELEPENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVH 614

Query: 564 GFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
            F+  DK+   +  +Y +L+ +   + +  + PD   +++D++ E
Sbjct: 615 EFLVGDKVHPQSNEIYKMLDEIDMRLEKAGFVPDTSEVLYDMDEE 659



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 132/417 (31%), Positives = 208/417 (49%), Gaps = 21/417 (5%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T LI  Y  +G ++EAR LFDE+P RDVVSW  MI+GY       +A   F EM R +V 
Sbjct: 198 TALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVT 257

Query: 110 PNAFTLSSVLKAC-KGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
           PN  T+ SVL AC +   SL     V       GL  +I + N L+D+Y  C   ++ A 
Sbjct: 258 PNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCG-DLEEAS 316

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            +F  ++ KN VSW  +I GY H       LG+F+ M+   ++ N  +F   + ACA+ G
Sbjct: 317 NLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLG 376

Query: 229 WVSFGKLIHAAVIKH--GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            +  GK +HA V K+     + + +  S++DMY +   L+ A + FD M  K L TWN +
Sbjct: 377 ALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAM 436

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-G 344
           I+G+   G ++  L +FS+M SE F P+  TF  ++ AC     LS G++  + +++   
Sbjct: 437 ISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYK 496

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHGHGKEAIELF 403
           +   L     +ID++ + G   +++ +   M  + D   W S++     H      IEL 
Sbjct: 497 VSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIH----RRIELA 552

Query: 404 DEMVK-----SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455
           + + K         P   V ++ + A   AG  ++  K    +ND   N  K++ GC
Sbjct: 553 ESVAKHLFELEPENPSAYVLLSNIYAG--AGRWEDVAKIRTRLND---NRMKKVPGC 604



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 128/246 (52%), Gaps = 5/246 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L   LI  Y   G +EEA  LF+++ +++VVSW VMI GYT  +C+ +A  +F  M+++ 
Sbjct: 298 LVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSN 357

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIK--EGLEGSIYVENSLMDVYATCCISMD 165
           ++PN  T  S+L AC  + +L     VH    K  + ++ ++ +  SL+D+YA C   + 
Sbjct: 358 IDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCG-DLA 416

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A+ +F+ M  K+  +W  +I+G+A  G+    LG+F  M  EG   +  +F   + AC 
Sbjct: 417 VAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACK 476

Query: 226 STGWVSFGKLIHAAVIK-HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLITW 283
             G +S G+   +++I+ +     LP    ++D++ R     +A      M  K D   W
Sbjct: 477 HAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIW 536

Query: 284 NTIIAG 289
            +++  
Sbjct: 537 CSLLGA 542



 Score = 43.1 bits (100), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 39/87 (44%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           K    L T+LI  Y   G +  A+ +FD M  + + +W  MI+G+      + A  +F  
Sbjct: 396 KNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSR 455

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLS 129
           M      P+  T   VL ACK    LS
Sbjct: 456 MTSEGFVPDDITFVGVLTACKHAGLLS 482


>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
          Length = 778

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 210/577 (36%), Positives = 311/577 (53%), Gaps = 13/577 (2%)

Query: 24  QSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVM 83
           ++L+S+  S ++S   L P     L T+LI  Y   G I  A  LF      +V  W  +
Sbjct: 18  EALKSLHASILKSH--LHPH----LCTSLIAQYASLGSISHAYALFSTSHSSNVFLWNHI 71

Query: 84  IAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGL 143
           I  +++      +  ++  M++  +    FT   +LKAC  +      A  H   +  G 
Sbjct: 72  IRAFSNTPHSRNSLRLYSRMLQLGIQATNFTFPFLLKACGCLADFELGARAHAHVVVFGY 131

Query: 144 EGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFK 203
           E  ++V NSLM +Y       D +R VF  M  +N VSW++++  YAH+G    GL +F 
Sbjct: 132 ESDVFVANSLMAMYGRFG-CFDFSRQVFERMPERNVVSWSSMVGAYAHNGRYEEGLLLFW 190

Query: 204 EMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFD 263
            ML EG+  N  S    V A A              VI +G  S+  V N+ + MY R  
Sbjct: 191 RMLNEGIAPNRGSI---VNAMACIHREHEADDFCRVVIDNGLDSDQSVQNAAMGMYARCG 247

Query: 264 CLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIA 322
            +  A ++F  + +KDL+ W ++I  Y ++      L +F +MK     P+  T  S+I 
Sbjct: 248 RIDVARRFFYGILDKDLVAWTSMIEAYVQADLPINALELFKQMKLLGIVPDSVTLLSLIH 307

Query: 323 ACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVT 382
           A + LA+    + VH  I R     ++AL  A+ID+Y KCGN+  ++K F  MS R+L++
Sbjct: 308 AVSNLASFQLARFVHGVITRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRMSARNLIS 367

Query: 383 WTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN 442
           W++M+ GYG HGHG+EA+ LFD+M K+ ++PD I F+ VL+ACSH GL+ EG + FK+MN
Sbjct: 368 WSTMISGYGMHGHGREALCLFDQM-KASIKPDHIAFVMVLSACSHGGLIAEGWECFKAMN 426

Query: 443 -DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLG 501
            D+ V P  E Y C+VDLLGRAGR+ EA   I+ MP  PD  VWG LLGAC+ H      
Sbjct: 427 RDFGVTPRTEHYACMVDLLGRAGRLSEAQAFIERMPITPDAGVWGALLGACRIHSNLETA 486

Query: 502 KLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDK 561
           + AA  + +L     G YI+LSNIYA+ GK +E    R +M+  G +K VG + IE+++K
Sbjct: 487 ETAARHLFNLDAENPGRYILLSNIYASSGKRKEADDIRALMKSRGVRKTVGHTIIEIKNK 546

Query: 562 VCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDI 598
           V  F+A D     T  +Y  L  L+  + E  Y PD+
Sbjct: 547 VYTFVAGDTSNPQTDLIYSELRKLMDRIQEAGYVPDL 583


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 192/569 (33%), Positives = 316/569 (55%), Gaps = 4/569 (0%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           +G   + T LI  Y   G +  A   F  +  RDVVSWT MIA     +    A  ++  
Sbjct: 138 EGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRR 197

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M  + V PN  TL +V  A      LS    ++ +     +E  + V NS M+++    +
Sbjct: 198 MQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGL 257

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            + +AR +F DM  ++ V+W  +IT Y  + N    + +F  +  +G++ N  +F + + 
Sbjct: 258 -LGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLN 316

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
              S   ++ GK+IH  V + G+  ++ V  +++ +Y R +    A + F +M  KD+IT
Sbjct: 317 VYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVIT 376

Query: 283 WNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           W  +   Y ++G   E L +F +M+ E   P   T  +++  CA LAAL  G+Q+H+ I+
Sbjct: 377 WTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHII 436

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
             G    + +  ALI+MY KCG +++++ +F +M+ RD++ W SM+  Y  HG+  E ++
Sbjct: 437 ENGFRMEMVVETALINMYGKCGKMAEARSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQ 496

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLL 460
           LF++M   G + D + F++VL+A SH+G V +G +YF +M  D+++ P  E+YGCVVDLL
Sbjct: 497 LFNQMQLDGEKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLL 556

Query: 461 GRAGRVKEAYELIKSMP-FKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
           GRAGR++EA +++  +    PD  +W  LLGAC+ H   +  K AA +VL+  P+  G Y
Sbjct: 557 GRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAY 616

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVY 579
           ++LSN+YAA G W+   + RK+MR  G KKE G S IE+ ++V  F+  D+       +Y
Sbjct: 617 VVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIY 676

Query: 580 GVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
             L++L   M    Y PD   ++HD+E E
Sbjct: 677 AELDVLNSEMRAAGYIPDTKMILHDVEDE 705



 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 126/451 (27%), Positives = 235/451 (52%), Gaps = 3/451 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           +++  +LI+ Y   G + EA+ +F+ +  +DV +WT MI  Y     +++A  +F +M  
Sbjct: 40  NLVCGHLIQMYAQCGSVPEAQQVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQE 99

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
            +V P   T  ++L AC   +SL +   +HG  +++G EG ++V  +L+++Y  C  S+ 
Sbjct: 100 EDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCG-SVR 158

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A   F  ++ ++ VSWT +I              +++ M L+GV  N  +      A  
Sbjct: 159 GAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYG 218

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
              ++S GK I++ V      S++ VMNS ++M+     L DA + F++M ++D++TWN 
Sbjct: 219 DPHYLSEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNI 278

Query: 286 IIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I  Y +     E + +F +++ +    N  TF  ++    +L +L+ G+ +H  +   G
Sbjct: 279 VITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAG 338

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
            D ++ +A AL+ +Y +C     + KIF +M  +D++TWT M + Y  +G  KEA++LF 
Sbjct: 339 YDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQ 398

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
           EM   G RP     +AVL  C+H   + +G +    + +        +   ++++ G+ G
Sbjct: 399 EMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVVETALINMYGKCG 458

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           ++ EA  + + M  K D  VW  +LGA  +H
Sbjct: 459 KMAEARSVFEKMA-KRDILVWNSMLGAYAQH 488



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 182/371 (49%), Gaps = 2/371 (0%)

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P+     ++L+ C   K++ +   VH      G E +  V   L+ +YA C  S+  A+ 
Sbjct: 3   PDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCG-SVPEAQQ 61

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           VF  ++ K+  +WT +I  Y   G+    LG+F +M  E V     ++   + ACAST  
Sbjct: 62  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 121

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           +  G  IH  +++ GF  ++ V  ++++MY +   +  A   F  +  +D+++W  +IA 
Sbjct: 122 LKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAA 181

Query: 290 YEKSGSSECLN-MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
             +         ++ +M+ +   PN  T  ++  A      LS G+ +++ +  R ++ +
Sbjct: 182 CVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESD 241

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           + + N+ ++M+   G + D++++F +M DRD+VTW  ++  Y  + +  EA+ LF  + +
Sbjct: 242 VRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQ 301

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKE 468
            G++ + I F+ +L   +    + +G    + + +   + +  +   ++ L GR     +
Sbjct: 302 DGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQ 361

Query: 469 AYELIKSMPFK 479
           A+++   M  K
Sbjct: 362 AWKIFVDMGSK 372



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 152/317 (47%), Gaps = 9/317 (2%)

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
           F   ++ C+S   V  G+ +H  V   GF  N  V   ++ MY +   + +A Q F+ + 
Sbjct: 8   FVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEILE 67

Query: 277 EKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ 335
            KD+  W  +I  Y + G     L MF +M+ E   P   T+ +I+ ACA+  +L  G +
Sbjct: 68  RKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGME 127

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
           +H  I+++G +G++ +  ALI+MY KCG++  +   F  +  RD+V+WT+M+     H  
Sbjct: 128 IHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQ 187

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455
              A  L+  M   GV P++I    V  A      + EG   +  ++   +  +  +   
Sbjct: 188 FALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVRVMNS 247

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGK----LAALRVLDL 511
            +++ G AG + +A  L + M    D   W  ++    ++   N G+       L+   +
Sbjct: 248 AMNMFGNAGLLGDARRLFEDM-VDRDVVTWNIVITFYVQNE--NFGEAVRLFGRLQQDGI 304

Query: 512 KPNMMGTYIILSNIYAA 528
           K N + T++++ N+Y +
Sbjct: 305 KANDI-TFVLMLNVYTS 320



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 116/229 (50%), Gaps = 7/229 (3%)

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
           F P+   F +++  C++   +  G++VH  +  RG + N  +   LI MYA+CG++ ++Q
Sbjct: 1   FKPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQ 60

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
           ++F  +  +D+  WT M+  Y   G    A+ +F +M +  V P ++ ++A+L AC+   
Sbjct: 61  QVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTE 120

Query: 430 LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
            + +G++    +       +  +   ++++  + G V+ A++  K +  + D   W  ++
Sbjct: 121 SLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHR-DVVSWTAMI 179

Query: 490 GACKEHRLPNLGKLAALRV-LD-LKPNMMGTYIILSNI----YAAEGKW 532
            AC +H    L +    R+ LD + PN +  Y + +      Y +EGK+
Sbjct: 180 AACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKF 228


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 199/545 (36%), Positives = 303/545 (55%), Gaps = 31/545 (5%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L   L+  Y   G + EAR +FDEMP ++VVSWT MIA Y       +A   F EM    
Sbjct: 102 LGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVG 161

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT-CCISMDN 166
           + PN FT +S+L AC  ++ L      H   +K G E +++V N L+D+YA   CI    
Sbjct: 162 IQPNHFTFASILPACTDLEVLGE---FHDEIVKGGFESNVFVGNGLVDMYAKRGCIEF-- 216

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGV-----EMNPYSFSIAV 221
           AR +F+ M  ++ VSW  +I GY  +G     L +F+E+    V      M  Y+    V
Sbjct: 217 ARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMAGYAQCGDV 276

Query: 222 RACAS-------TGWVSFGKLIHAAV----IKHGFG-------SNLPVMNSILDMYCRFD 263
                          VS+  +I   V    +K  F         N+   N+++  + +  
Sbjct: 277 ENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNG 336

Query: 264 CLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIA 322
            + +A + F  M E ++++WN +IAGY ++G +E  L +F +M+     PN  TF  ++ 
Sbjct: 337 QVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLP 396

Query: 323 ACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVT 382
           ACA LA L  G + H  ++R G   ++ + N L+ MYAKCG+I D++K+F  M  +D  +
Sbjct: 397 ACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSAS 456

Query: 383 WTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN 442
            ++M++GY  +G  KE++ELF++M  +G++PDR+ F+ VL+AC HAGLVDEG +YF  M 
Sbjct: 457 LSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGLVDEGRQYFDIMT 516

Query: 443 D-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLG 501
             Y++ P  E YGC++DLLGRAG   EA +LI  MP KPD  +WG LL AC+ H   +LG
Sbjct: 517 RFYHITPAMEHYGCMIDLLGRAGCFDEANDLINKMPIKPDADMWGSLLSACRTHNNIDLG 576

Query: 502 KLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDK 561
           +  A  ++ L P     Y++LSNIYAA G+W++    R  M+    KK++G SWI ++ +
Sbjct: 577 EKVAQHLIALNPQNPAPYVLLSNIYAAAGRWDDIGSVRNRMKDRKVKKKLGCSWIVIKKQ 636

Query: 562 VCGFI 566
           V  F+
Sbjct: 637 VHAFL 641



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 121/402 (30%), Positives = 212/402 (52%), Gaps = 23/402 (5%)

Query: 95  QAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLE-GSIYVENSL 153
           +A  +  +MV N + P++ T  S+L+ C   KSL +A L+H   I+   E   I + N L
Sbjct: 47  EALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQFECQDISLGNKL 106

Query: 154 MDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMN 213
           + +Y     S+  AR VF++M  KN VSWT +I  YA   +G   LG F EM   G++ N
Sbjct: 107 VSIYVKLG-SLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPN 165

Query: 214 PYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFD 273
            ++F+  + AC  T     G+  H  ++K GF SN+ V N ++DMY +  C+  A + FD
Sbjct: 166 HFTFASILPAC--TDLEVLGEF-HDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFD 222

Query: 274 EMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSC 332
           +M ++D+++WN +IAGY ++G  E  L +F ++       +  T+ +++A  A      C
Sbjct: 223 KMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKR----DVITWNTMMAGYA-----QC 273

Query: 333 GQQVHA-GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG 391
           G   +A  +  +  + NL   N +I  Y + G++ ++ K+F  M +R++++W +++ G+ 
Sbjct: 274 GDVENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFA 333

Query: 392 AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE 451
            +G  +EA++LF  M +  V    + + A++   S  G  +  LK F  M   ++ PN E
Sbjct: 334 QNGQVEEALKLFKTMPECNV----VSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTE 389

Query: 452 IYGCVVD---LLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490
            +  V+     L    +  EA+E++    F+ D  V   L+G
Sbjct: 390 TFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVG 431



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 110/427 (25%), Positives = 188/427 (44%), Gaps = 77/427 (18%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           IPK   I    ++  Y   G +E A  LF++MPE+++VSW  MIAGY       +A+ +F
Sbjct: 255 IPKRDVITWNTMMAGYAQCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLF 314

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
             M    V                   +S  A++ G A    +E ++             
Sbjct: 315 QIMPERNV-------------------ISWNAVISGFAQNGQVEEALK------------ 343

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
                    +F  M   N VSW  +I GY+ +G     L +F +M +  ++ N  +F+I 
Sbjct: 344 ---------LFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIV 394

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           + ACA+   +  G   H  VI+ GF S++ V N+++ MY +   + DA + FD M ++D 
Sbjct: 395 LPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDS 454

Query: 281 ITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
            + + +I GY  +G S E L +F +M+     P+  TF  +++AC            HAG
Sbjct: 455 ASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACC-----------HAG 503

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
           +V  G            D+  +  +I+ + + +  M D             G  G   EA
Sbjct: 504 LVDEG--------RQYFDIMTRFYHITPAMEHYGCMIDL-----------LGRAGCFDEA 544

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP-NKEIYGCVVD 458
            +L ++M    ++PD  ++ ++L+AC     +D G K  + +    +NP N   Y  + +
Sbjct: 545 NDLINKM---PIKPDADMWGSLLSACRTHNNIDLGEKVAQHL--IALNPQNPAPYVLLSN 599

Query: 459 LLGRAGR 465
           +   AGR
Sbjct: 600 IYAAAGR 606



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 153/344 (44%), Gaps = 40/344 (11%)

Query: 40  LIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTV 99
           ++P+   I    +I  +   G +EEA  LF  MPE +VVSW  MIAGY+       A  +
Sbjct: 316 IMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKL 375

Query: 100 FVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
           F +M   ++ PN  T + VL AC  +  L      H + I+ G +  + V N+L+ +YA 
Sbjct: 376 FGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAK 435

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
           C  S+++AR VF+ M+ ++  S + +I GYA +G     L +F++M   G++ +  +F  
Sbjct: 436 CG-SIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVG 494

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNS---ILDMYCRFDCLSDANQYFDEMT 276
            + AC   G V  G+     + +  F    P M     ++D+  R  C  +AN   ++M 
Sbjct: 495 VLSACCHAGLVDEGRQYFDIMTR--FYHITPAMEHYGCMIDLLGRAGCFDEANDLINKMP 552

Query: 277 EKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQV 336
            K                                 P+   + S+++AC T   +  G++V
Sbjct: 553 IK---------------------------------PDADMWGSLLSACRTHNNIDLGEKV 579

Query: 337 HAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDL 380
              ++      N A    L ++YA  G   D   + + M DR +
Sbjct: 580 AQHLIALNPQ-NPAPYVLLSNIYAAAGRWDDIGSVRNRMKDRKV 622



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 102/196 (52%), Gaps = 5/196 (2%)

Query: 297 ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD-GNLALANAL 355
           E L++   M      P+  T+ S++  C    +L   + +HA +++   +  +++L N L
Sbjct: 47  EALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQFECQDISLGNKL 106

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           + +Y K G++ +++++F EM  +++V+WT+M+  Y  H HG+EA+  F EM   G++P+ 
Sbjct: 107 VSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNH 166

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKS 475
             F ++L AC+   ++ E   +   +       N  +   +VD+  + G ++ A EL   
Sbjct: 167 FTFASILPACTDLEVLGE---FHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDK 223

Query: 476 MPFKPDESVWGPLLGA 491
           MP + D   W  ++  
Sbjct: 224 MP-QRDVVSWNAMIAG 238


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 198/561 (35%), Positives = 316/561 (56%), Gaps = 7/561 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +  +L+  Y   GL+E+A+++F+ M  RD+VSW  ++AG     C  +A  +F E     
Sbjct: 238 VCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATM 297

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
                 T ++V+K C  +K L+ A  +H   +K G   +  V  +L D Y+ C    D  
Sbjct: 298 GKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADAL 357

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
            +       +N VSWT +I+G   +G+    + +F  M  + V  N +++S  ++A  S 
Sbjct: 358 NIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSI 417

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
                   IHA VIK  +     V  ++L  Y +F    DA   F  + +KD++ W+ ++
Sbjct: 418 ----LPPQIHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAML 473

Query: 288 AGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAA-LSCGQQVHAGIVRRGL 345
           + + ++G  E    +F+KM  +   PN FT +S+I ACA  +A +  G+Q HA  ++   
Sbjct: 474 SCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRY 533

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
              + +++AL+ MY++ GNI  +Q +F   +DRDLV+W SM+ GY  HG+  +AIE F +
Sbjct: 534 HDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQ 593

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAG 464
           M  SG++ D + F+AV+  C+H GLV EG +YF SM  D+ +NP  E Y C+VDL  RAG
Sbjct: 594 MEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAG 653

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           ++ E   LI+ MPF     VW  LLGAC+ H+   LGK +A ++L L+P+   TY++LSN
Sbjct: 654 KLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSN 713

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           IYAA GKW+E  + RK+M     KKE G SWI++++KV  FIA DK    +  +Y  L++
Sbjct: 714 IYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKV 773

Query: 585 LIRHMNETAYEPDIDCLIHDL 605
           +I  + +  Y P+   ++HD+
Sbjct: 774 IITRLKQDGYSPNTSFVLHDI 794



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 121/402 (30%), Positives = 209/402 (51%), Gaps = 12/402 (2%)

Query: 31  KSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEE----ARTLFDEMPERDV-VSWTVMIA 85
           K+++   P  +PK   +LAT    +  ++G+       AR   DE+P RD  V    ++ 
Sbjct: 16  KNAVNLAPEQVPK---LLATRASPARVEDGVCLRDPPGARYPLDEIPRRDAAVGANRVLF 72

Query: 86  GYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLE- 144
            Y       +    F    R  V  ++ TLS VLKAC+ +        +H + +K G + 
Sbjct: 73  DYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDR 132

Query: 145 GSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKE 204
           G +    SL+D+Y  C  S+     VF  M  KN V+WT+L+TG AH+      + +F  
Sbjct: 133 GEVSAGTSLVDMYMKCG-SVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFR 191

Query: 205 MLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264
           M  EG+  NP++F+  + A AS G +  G+ +HA  +K G  S++ V NS+++MY +   
Sbjct: 192 MRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGL 251

Query: 265 LSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAA 323
           + DA   F+ M  +D+++WNT++AG + +    E L +F + ++        T+ ++I  
Sbjct: 252 VEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKL 311

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVT 382
           CA L  L+  +Q+H+ +++ G      +  AL D Y+KCG ++D+  IFS  +  R++V+
Sbjct: 312 CANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVS 371

Query: 383 WTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTA 424
           WT+++ G   +G    A+ LF  M +  V P+   + A+L A
Sbjct: 372 WTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKA 413



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 150/306 (49%), Gaps = 2/306 (0%)

Query: 189 YAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFG-S 247
           YA  G     L  F      GV ++  + S  ++AC S      G+ +H   +K G    
Sbjct: 74  YARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRG 133

Query: 248 NLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMK 306
            +    S++DMY +   + +  + F+ M +K+++TW +++ G   +   SE + +F +M+
Sbjct: 134 EVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMR 193

Query: 307 SERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNIS 366
           +E   PN FTF S+++A A+  AL  GQ+VHA  V+ G   ++ + N+L++MYAKCG + 
Sbjct: 194 AEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVE 253

Query: 367 DSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS 426
           D++ +F+ M  RD+V+W ++M G   +    EA++LF E   +  +  +  +  V+  C+
Sbjct: 254 DAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCA 313

Query: 427 HAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWG 486
           +   +    +    +  +  +    +   + D   + G + +A  +        +   W 
Sbjct: 314 NLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWT 373

Query: 487 PLLGAC 492
            ++  C
Sbjct: 374 AIISGC 379


>gi|297811443|ref|XP_002873605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319442|gb|EFH49864.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 750

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 193/545 (35%), Positives = 310/545 (56%), Gaps = 5/545 (0%)

Query: 43  KGPSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFV 101
           + PS+L  N +++ Y + G +E+A  LFDEM + + VS T MI+ Y      ++A  +F 
Sbjct: 112 ENPSVLLQNCVLQMYCECGSLEDADKLFDEMSDLNAVSRTTMISAYAEQGLLDKAVGLFS 171

Query: 102 EMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
            M+ +   P +   +++LK+    ++L     +H   I+ GL  +  +E  ++++Y  C 
Sbjct: 172 RMLESGDKPPSSMYTTLLKSLVNPRALDIGRQIHAHVIRAGLCSNASIETGIVNMYVKCG 231

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
             +  A+ VF+ M  K  V+WT L+ GY  +G     L +F +++ EGVE + + FS+ +
Sbjct: 232 W-LVGAKRVFDQMAVKKPVAWTGLMVGYTQAGRARDALKLFVDLITEGVEWDSFVFSVVL 290

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
           +ACAS   + FGK IHA V K G    + V   ++D Y +      A + F E+ E + +
Sbjct: 291 KACASLEELRFGKQIHACVAKLGLECEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDV 350

Query: 282 TWNTIIAGY-EKSGSSECLNMFSKMKSER-FSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           +W+ II+GY + S   E +  F  ++S+     N FT+TSI  AC+ LA  + G QVHA 
Sbjct: 351 SWSAIISGYCQMSQFEEAVKTFKSLRSKNAVVLNSFTYTSIFQACSVLADCNIGGQVHAD 410

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
            ++R L G+    +ALI MY+KCG + D+ ++F  M + D+V WT+ + G+  +G+  EA
Sbjct: 411 AIKRSLIGSQYGESALITMYSKCGCLDDAHEVFESMDNPDIVAWTAFISGHAYYGNASEA 470

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVD 458
           + LF++MV  G++P+ + F+AVLTACSHAGLV++G  Y  +M   YNV P  + Y C++D
Sbjct: 471 LRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHYLDTMLRKYNVAPTIDHYDCMID 530

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518
           +  R+G + EA   +K+MPF+PD   W   L  C  H+   LGK+A   +  L P     
Sbjct: 531 IYARSGLLDEALRFMKNMPFEPDAMSWKCFLSGCWTHKNLELGKIAGEELRQLDPEDTAG 590

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
           Y++  N+Y   GKWEE A+  K+M     KKE+  SWI+ + K+  FI  DK    +Q +
Sbjct: 591 YVLPFNLYTWAGKWEEAAEVMKLMNERMLKKELSCSWIQEKGKIHRFIVGDKHHPQSQEI 650

Query: 579 YGVLE 583
           Y  L+
Sbjct: 651 YEKLK 655



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 128/493 (25%), Positives = 240/493 (48%), Gaps = 51/493 (10%)

Query: 94  NQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEG-SIYVENS 152
           N+A+  F EM +  V+ + ++   + +AC+ ++SLS+  L+H   ++ G+E  S+ ++N 
Sbjct: 63  NEAFEFFQEMDKAGVSVSLYSYQCLFEACRELRSLSHGRLLHNR-MRMGIENPSVLLQNC 121

Query: 153 LMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEM 212
           ++ +Y  C  S+++A  +F++M   N VS TT+I+ YA  G     +G+F  ML  G + 
Sbjct: 122 VLQMYCECG-SLEDADKLFDEMSDLNAVSRTTMISAYAEQGLLDKAVGLFSRMLESGDKP 180

Query: 213 NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYF 272
               ++  +++  +   +  G+ IHA VI+ G  SN  +   I++MY +   L  A + F
Sbjct: 181 PSSMYTTLLKSLVNPRALDIGRQIHAHVIRAGLCSNASIETGIVNMYVKCGWLVGAKRVF 240

Query: 273 DEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALS 331
           D+M  K  + W  ++ GY ++G + + L +F  + +E    + F F+ ++ ACA+L  L 
Sbjct: 241 DQMAVKKPVAWTGLMVGYTQAGRARDALKLFVDLITEGVEWDSFVFSVVLKACASLEELR 300

Query: 332 CGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG 391
            G+Q+HA + + GL+  +++   L+D Y KC +   + + F E+ + + V+W++++ GY 
Sbjct: 301 FGKQIHACVAKLGLECEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYC 360

Query: 392 AHGHGKEAIELFDEM-VKSGVRPDRIVFMAVLTACS-----------HA----------- 428
                +EA++ F  +  K+ V  +   + ++  ACS           HA           
Sbjct: 361 QMSQFEEAVKTFKSLRSKNAVVLNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQ 420

Query: 429 -------------GLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKS 475
                        G +D+  + F+SM+    NP+   +   +      G   EA  L + 
Sbjct: 421 YGESALITMYSKCGCLDDAHEVFESMD----NPDIVAWTAFISGHAYYGNASEALRLFEK 476

Query: 476 M---PFKPDESVWGPLLGACKEHRLPNLGKL---AALRVLDLKPNMMGTYIILSNIYAAE 529
           M     KP+   +  +L AC    L   GK      LR  ++ P  +  Y  + +IYA  
Sbjct: 477 MVSCGMKPNSVTFIAVLTACSHAGLVEQGKHYLDTMLRKYNVAPT-IDHYDCMIDIYARS 535

Query: 530 GKWEEFAKFRKIM 542
           G  +E  +F K M
Sbjct: 536 GLLDEALRFMKNM 548



 Score = 38.9 bits (89), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 37/90 (41%)

Query: 387 MIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV 446
           ++    HG   EA E F EM K+GV      +  +  AC     +  G      M     
Sbjct: 53  LVSLSKHGKLNEAFEFFQEMDKAGVSVSLYSYQCLFEACRELRSLSHGRLLHNRMRMGIE 112

Query: 447 NPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
           NP+  +  CV+ +    G +++A +L   M
Sbjct: 113 NPSVLLQNCVLQMYCECGSLEDADKLFDEM 142


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 183/559 (32%), Positives = 311/559 (55%), Gaps = 44/559 (7%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+ +Y   G I+  +  FD MP RD VS+   IAG++  +C  ++  +F  M R    P 
Sbjct: 95  LLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPT 154

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
            +T+ S+L A   +  L     +HG  I     G++++ N+L D+YA C   ++ AR +F
Sbjct: 155 EYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCG-EIEQARWLF 213

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           + +  KN VSW  +I+GYA +G     +G+  +M L G                      
Sbjct: 214 DCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSG---------------------- 251

Query: 232 FGKLIHAAVIKHGFGSNLP---VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
                           ++P    M++I+  YC+   + +A + F E  EKD++ W  ++ 
Sbjct: 252 ----------------HMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMV 295

Query: 289 GYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           GY K+G  E  L +F++M  E   P+ +T +S++++CA LA+L  GQ VH   +  GL+ 
Sbjct: 296 GYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNN 355

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           NL +++ALIDMY+KCG I D++ +F+ M  R++V+W +M++G   +GH K+A+ELF+ M+
Sbjct: 356 NLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENML 415

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRV 466
           +   +PD + F+ +L+AC H   +++G +YF S+ N + + P  + Y C+V+LLGR GR+
Sbjct: 416 QQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRI 475

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
           ++A  LIK+M   PD  +W  LL  C         ++AA  + +L P +   YI+LSN+Y
Sbjct: 476 EQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMY 535

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           A+ G+W++ A  R +M+    KK  G SWIE+ ++V  F + D+    ++ +Y  L MLI
Sbjct: 536 ASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLI 595

Query: 587 RHMNETAYEPDIDCLIHDL 605
             + E  + P+ + ++HD+
Sbjct: 596 GKLQEEGFTPNTNLVLHDV 614


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  362 bits (928), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 190/516 (36%), Positives = 301/516 (58%), Gaps = 5/516 (0%)

Query: 74  ERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAAL 133
           +    SW   +          +A  ++ +M+ +  +PNAFT     K+C  +      + 
Sbjct: 18  QNTTASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQ 77

Query: 134 VHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND--VSWTTLITGYAH 191
           +HG  IK G E   +V+ SL+ +Y  C  ++ +AR VF++     +  V +  LI GY+ 
Sbjct: 78  LHGHVIKTGCEPEPFVQTSLISMYCKCS-TIASARKVFDENHHSRNLAVCYNALIAGYSL 136

Query: 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251
           +      + +F++M  EGV +N  +    +  CA    + FG  +HA  ++ G   +L V
Sbjct: 137 NSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSV 196

Query: 252 MNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERF 310
            N +L MY R   +  A + FD M EK LITWN +I+GY ++G +   L+++ KM+    
Sbjct: 197 GNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGI 256

Query: 311 SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQK 370
            P+  T   ++++CA L A + G++V   I   G   N  L NALI+MYA+CGN+  ++ 
Sbjct: 257 VPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARA 316

Query: 371 IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           IF  M+++++++WT+++ GYG HG G+ A++LFDEM+ S   PD   F++VL+ACSHAGL
Sbjct: 317 IFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGL 376

Query: 431 VDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
            ++GL YF +M  DY + P  E Y CVVDLLGRAGR++EA +LI SM  +PD +VWG LL
Sbjct: 377 TEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALL 436

Query: 490 GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKK 549
           GACK HR   L +LA  +V++ +P  +G Y++LSNI++  G  E   + R +MR    KK
Sbjct: 437 GACKIHRNVELAELAFEKVIEFEPTNIGYYVLLSNIFSEAGNMEGILRVRVMMRERKLKK 496

Query: 550 EVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           E G S++E + ++  F+A D+     Q +Y +L+ L
Sbjct: 497 EPGCSYVEYQGRIHLFLAGDRTHPQAQEIYHMLDGL 532



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 112/239 (46%), Gaps = 3/239 (1%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+  Y   G ++ AR LFD MPE+ +++W  MI+GY           ++ +M    + P+
Sbjct: 200 LLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPD 259

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
             TL  VL +C  + + +    V       G   + +++N+L+++YA C  ++  AR +F
Sbjct: 260 PVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCG-NLVKARAIF 318

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           + M  KN +SWT +I GY   G G   + +F EM+      +  +F   + AC+  G   
Sbjct: 319 DGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTE 378

Query: 232 FGKLIHAAVIK-HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLITWNTIIA 288
            G     A+ + +G        + ++D+  R   L +A +    M+ E D   W  ++ 
Sbjct: 379 KGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLG 437



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 41/76 (53%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            L   LI  Y   G + +AR +FD M E++V+SWT +IAGY        A  +F EM+ +
Sbjct: 296 FLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISS 355

Query: 107 EVNPNAFTLSSVLKAC 122
           +  P+     SVL AC
Sbjct: 356 DELPDGAAFVSVLSAC 371


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  362 bits (928), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 198/567 (34%), Positives = 319/567 (56%), Gaps = 9/567 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV- 104
           + +A+ L K YF     ++AR +FD +P  D + W  ++AG       ++A   FV MV 
Sbjct: 149 TFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGLPG----SEALEAFVRMVD 204

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
              V P++ TL+S L+A      ++    VHG  +K GL    +V   LM +Y+ C   M
Sbjct: 205 AGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCG-DM 263

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           D+A+ +F+ M   + V++  LI+GY+ +G     + +FKE+   G   N  +    +   
Sbjct: 264 DSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVY 323

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           +  G     + +HA V+K    ++  V  ++  +YCR + +  A   FD M EK + +WN
Sbjct: 324 SPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWN 383

Query: 285 TIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +I+GY ++G +E  + +F  M+     PN  T +S ++ACA L ALS G+ VH  I + 
Sbjct: 384 AMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKE 443

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
            L+ N+ +  ALIDMYAKCG+I++++ IF  M ++++V+W +M+ GYG HG G EA++L+
Sbjct: 444 KLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLY 503

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGR 462
            +M+ + + P    F++V+ ACSH GLVDEG K F+ M N+Y + P  E   C+VDLLGR
Sbjct: 504 KDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGR 563

Query: 463 AGRVKEAYELIKSMPFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           AG++ EA ELI   P       VWG LLGAC  H+  +L KLA+ ++ +L     G Y++
Sbjct: 564 AGKLNEALELISEFPQSAIGPGVWGALLGACMVHKNSDLAKLASQKLFELDSENAGYYVL 623

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGV 581
           LSN+Y ++  + E A  R+  +     K  G + IE+ D+   F+A D +   ++ +Y  
Sbjct: 624 LSNLYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLIEIGDRPHVFMAGDHLHPQSEAIYSY 683

Query: 582 LEMLIRHMNETAYEPDIDCLIHDLEGE 608
           LE L   M E  Y+P  +  ++D+E E
Sbjct: 684 LERLTAKMIEAGYQPVTEAALYDVEEE 710



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 171/387 (44%), Gaps = 53/387 (13%)

Query: 213 NPYSFSIAVRACASTGW-------VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCL 265
           +P SFS A  A + +          +  + +H   +  G+ ++  V +++  +Y +    
Sbjct: 106 SPDSFSFAFAATSLSSSCSSRGNDAAAARTLHGLSVAAGYAADTFVASALAKLYFKLSRG 165

Query: 266 SDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKM-KSERFSPNCFTFTSIIAAC 324
            DA + FD +   D I WNT++AG      SE L  F +M  + R  P+  T  S + A 
Sbjct: 166 DDARKVFDTVPSPDTILWNTLLAGLP---GSEALEAFVRMVDAGRVRPDSTTLASSLRAA 222

Query: 325 ATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWT 384
           A  + ++ G+ VH   V+ GL  +  +   L+ +Y+KCG++  +Q +F  M + DLV + 
Sbjct: 223 AEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYN 282

Query: 385 SMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAV-----------LTACSHA----- 428
           +++ GY  +G  + ++ELF E+  SG RP+    +AV           L  C HA     
Sbjct: 283 ALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKA 342

Query: 429 -----GLVDEGLKYF----------KSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA---Y 470
                 LV   L             +S+ D  +    E +  ++    + G  + A   +
Sbjct: 343 RLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALF 402

Query: 471 ELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII--LSNIYAA 528
           +L++ +  +P+       L AC      +LGK    R++  +   +  Y++  L ++YA 
Sbjct: 403 QLMQELNVQPNPITISSTLSACAHLGALSLGKWVH-RIISKEKLELNVYVMTALIDMYAK 461

Query: 529 EGKWEEFAKFRKIMRGMGSKKEVGMSW 555
            G     A+ R I   M +K  V  SW
Sbjct: 462 CGS---IAEARSIFDRMDNKNVV--SW 483


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  362 bits (928), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 196/523 (37%), Positives = 291/523 (55%), Gaps = 33/523 (6%)

Query: 60  GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119
           G +  A  LF+ + + +   W  MI G +  +    A   +V M+   V PN++T   +L
Sbjct: 80  GNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLL 139

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA--------------------- 158
           K+C  + +      +HG  +K GLE   +V  SL+++YA                     
Sbjct: 140 KSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAV 199

Query: 159 --TCCIS-------MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG 209
             T  I+       +D+AR +F ++  ++ VSW  +I GYA SG     L  F+EM    
Sbjct: 200 SFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRAN 259

Query: 210 VEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDAN 269
           V  N  +    + ACA +G +  G  + + +  HG GSNL ++N+++DMY +   L  A 
Sbjct: 260 VAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKAR 319

Query: 270 QYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLA 328
             F+ + EKD+I+WN +I GY    S  E L +F KM+     PN  TF SI+ ACA L 
Sbjct: 320 DLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLG 379

Query: 329 ALSCGQQVHAGIVRRGLD-GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMM 387
           AL  G+ +HA I ++ L   N +L  +LIDMYAKCGNI  ++++F+ M  + L +W +M+
Sbjct: 380 ALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMI 439

Query: 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNV 446
            G   HGH   A+ELF +M   G  PD I F+ VL+ACSHAGLV+ G + F SM  DY++
Sbjct: 440 SGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDI 499

Query: 447 NPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAAL 506
           +P  + YGC++DLLGRAG   EA  L+K+M  KPD ++WG LLGAC+ H    LG+ AA 
Sbjct: 500 SPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAK 559

Query: 507 RVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKK 549
            + +L+P   G Y++LSNIYA  G+W++ A+ R  +   G KK
Sbjct: 560 HLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKK 602



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 132/442 (29%), Positives = 211/442 (47%), Gaps = 24/442 (5%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T LI  Y   G +++AR LF+E+P RD VSW  MIAGY       +A   F EM R  V 
Sbjct: 202 TALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVA 261

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           PN  T+ +VL AC    SL     V       GL  ++ + N+L+D+Y+ C   +D AR 
Sbjct: 262 PNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCG-DLDKARD 320

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           +F  +  K+ +SW  +I GY+H  +    L +F++M    VE N  +F   + ACA  G 
Sbjct: 321 LFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGA 380

Query: 230 VSFGKLIHAAVIKHGFG-SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
           +  GK IHA + K   G +N  +  S++DMY +   +  A Q F  M  K L +WN +I+
Sbjct: 381 LDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMIS 440

Query: 289 GYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-GLD 346
           G    G +   L +F +M+ E F P+  TF  +++AC+    +  G+Q  + +V    + 
Sbjct: 441 GLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDIS 500

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHGH-------GKE 398
             L     +ID+  + G   +++ +   M  + D   W S++     HG+        K 
Sbjct: 501 PKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKH 560

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVD 458
             EL  E       P   V ++ + A   AG  D+  +    +ND  +   ++IY  + +
Sbjct: 561 LFELEPE------NPGAYVLLSNIYAT--AGRWDDVARIRTKLNDKGMKKXQDIYKMLDE 612

Query: 459 L---LG-RAGRVKEAYELIKSM 476
           +    G R G V +  E++  M
Sbjct: 613 IDQSFGERPGXVPDTSEVLYDM 634



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 139/283 (49%), Gaps = 6/283 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L   LI  Y   G +++AR LF+ + E+D++SW VMI GY+  N + +A  +F +M ++ 
Sbjct: 301 LVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSN 360

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLE-GSIYVENSLMDVYATCCISMDN 166
           V PN  T  S+L AC  + +L     +H    K+ L   +  +  SL+D+YA C  +++ 
Sbjct: 361 VEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCG-NIEA 419

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A+ VF  MK K+  SW  +I+G A  G+    L +F++M  EG E +  +F   + AC+ 
Sbjct: 420 AKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSH 479

Query: 227 TGWVSFGKLIHAAVIK-HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLITWN 284
            G V  G+   +++++ +     L     ++D+  R     +A      M  K D   W 
Sbjct: 480 AGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWG 539

Query: 285 TIIAGYEKSGSSECLNMFSK--MKSERFSPNCFTFTSIIAACA 325
           +++      G+ E     +K   + E  +P  +   S I A A
Sbjct: 540 SLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATA 582


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 175/477 (36%), Positives = 285/477 (59%), Gaps = 2/477 (0%)

Query: 134 VHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSG 193
           VH   +  G    + + N L+  YA    ++D+A  +F+ +  ++  +W+ ++ G+A +G
Sbjct: 22  VHAHVVANGTLQDLVIANKLLYTYAQH-KAIDDAYSLFDGLTMRDSKTWSVMVGGFAKAG 80

Query: 194 NGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMN 253
           +  G    F+E+L  GV  + Y+    +R C     +  G++IH  V+KHG  S+  V  
Sbjct: 81  DHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVCA 140

Query: 254 SILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPN 313
           S++DMY +   + DA + F+ M  KDL+TW  +I  Y    + E L +F +M+ E   P+
Sbjct: 141 SLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCNAYESLVLFDRMREEGVVPD 200

Query: 314 CFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFS 373
                +++ ACA L A+   +  +  IVR G   ++ L  A+IDMYAKCG++  ++++F 
Sbjct: 201 KVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVFD 260

Query: 374 EMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDE 433
            M ++++++W++M+  YG HG GK+AI+LF  M+   + P+R+ F+++L ACSHAGL++E
Sbjct: 261 RMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEE 320

Query: 434 GLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGAC 492
           GL++F SM  ++ V P+ + Y C+VDLLGRAGR+ EA  LI++M  + DE +W  LLGAC
Sbjct: 321 GLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALLGAC 380

Query: 493 KEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVG 552
           + H    L + AA  +L+L+P   G Y++LSNIYA  GKWE+ AKFR +M     KK  G
Sbjct: 381 RIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWEKVAKFRDMMTQRKLKKIPG 440

Query: 553 MSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGET 609
            +WIEV +K   F   D+    ++ +Y +L  LI+ +    Y PD D ++ D+E E 
Sbjct: 441 WTWIEVDNKTYQFSVGDRSHPQSKEIYEMLMSLIKKLEMAGYVPDTDFVLQDVEEEV 497



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 180/355 (50%), Gaps = 27/355 (7%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++A  L+ +Y     I++A +LFD +  RD  +W+VM+ G+     H   +  F E++R 
Sbjct: 36  VIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKAGDHAGCYATFRELLRC 95

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V P+ +TL  V++ C+    L    ++H + +K GL    +V  SL+D+YA C +  D 
Sbjct: 96  GVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVCASLVDMYAKCIVVEDA 155

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
            RL F  M  K+ V+WT +I  YA   N Y  L +F  M  EGV  +  +    V ACA 
Sbjct: 156 QRL-FERMLSKDLVTWTVMIGAYA-DCNAYESLVLFDRMREEGVVPDKVAMVTVVNACAK 213

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G +   +  +  ++++GF  ++ +  +++DMY +   +  A + FD M EK++I+W+ +
Sbjct: 214 LGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMKEKNVISWSAM 273

Query: 287 IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           IA Y   G   + +++F  M S    PN  TF S++ AC+           HAG++  GL
Sbjct: 274 IAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACS-----------HAGLIEEGL 322

Query: 346 ------------DGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMM 387
                         ++     ++D+  + G + ++ ++   M+ ++D   W++++
Sbjct: 323 RFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALL 377



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 1/158 (0%)

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
           +QVHA +V  G   +L +AN L+  YA+   I D+  +F  ++ RD  TW+ M+ G+   
Sbjct: 20  RQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKA 79

Query: 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIY 453
           G        F E+++ GV PD      V+  C     +  G      +  + +  +  + 
Sbjct: 80  GDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVC 139

Query: 454 GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
             +VD+  +   V++A  L + M  K D   W  ++GA
Sbjct: 140 ASLVDMYAKCIVVEDAQRLFERMLSK-DLVTWTVMIGA 176


>gi|356498879|ref|XP_003518275.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 754

 Score =  361 bits (927), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 184/557 (33%), Positives = 314/557 (56%), Gaps = 14/557 (2%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+  Y   G +E+AR +F+ MP R+VV+WT ++ G+   +    A  VF EM+     P+
Sbjct: 105 LVNVYAKCGNMEDARRVFENMPRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPS 164

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
            +TLS+VL AC  ++SL      H   IK  L+    V ++L  +Y+ C   +++A   F
Sbjct: 165 IYTLSAVLHACSSLQSLKLGDQFHAYIIKYHLDFDTSVGSALCSLYSKCG-RLEDALKAF 223

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           + ++ KN +SWT+ ++    +G    GL +F EM+ E ++ N ++ + A+  C     + 
Sbjct: 224 SRIREKNVISWTSAVSACGDNGAPVKGLRLFVEMISEDIKPNEFTLTSALSQCCEIPSLE 283

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            G  + +  IK G+ SNL V NS+L +Y +   + +A+++F+ M +  ++TWN +IAG+ 
Sbjct: 284 LGTQVCSLCIKFGYESNLRVRNSLLYLYLKSGFIVEAHRFFNRMDDVSMVTWNAMIAGHA 343

Query: 292 K------------SGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           +               SE L +FSK+      P+ FT +S+++ C+ + A+  G+Q+HA 
Sbjct: 344 QMMELTKDNLSACQRGSEALKIFSKLNQSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQ 403

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
            ++ G   ++ ++ +LI MY KCG+I  + K F EMS R ++ WTSM+ G+  HG  ++A
Sbjct: 404 TIKTGFLSDVIVSTSLISMYNKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQA 463

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVD 458
           + +F++M  +GVRP+ + F+ VL+ACSHAG+V + L YF+ M   Y + P  + Y C+VD
Sbjct: 464 LHIFEDMSLAGVRPNTVTFVGVLSACSHAGMVSQALNYFEIMQKKYKIKPVMDHYECMVD 523

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518
           +  R GR+++A   IK M ++P E +W   +  C+ H    LG  A+ ++L LKP    T
Sbjct: 524 MFVRLGRLEQALNFIKKMNYEPSEFIWSNFIAGCRSHGNLELGFYASEQLLSLKPKDPET 583

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
           Y++L N+Y +  ++++ ++ RK+M      K    SWI ++DKV  F  NDK    +  +
Sbjct: 584 YVLLLNMYLSADRFDDVSRVRKMMEVEKVGKLKDWSWISIKDKVYSFKTNDKTHPPSSLI 643

Query: 579 YGVLEMLIRHMNETAYE 595
              LE L+       YE
Sbjct: 644 CKSLEDLLAKAKNLGYE 660



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 182/329 (55%), Gaps = 13/329 (3%)

Query: 118 VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK 177
           +L+ C   +S S   +VHG  +K G   + +V + L++VYA C  +M++AR VF +M  +
Sbjct: 70  LLQQCLDKRSYSGTQIVHGHVMKTGCHDNFFVMSFLVNVYAKCG-NMEDARRVFENMPRR 128

Query: 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIH 237
           N V+WTTL+ G+  +      + VF+EML  G   + Y+ S  + AC+S   +  G   H
Sbjct: 129 NVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSIYTLSAVLHACSSLQSLKLGDQFH 188

Query: 238 AAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS- 296
           A +IK+    +  V +++  +Y +   L DA + F  + EK++I+W + ++    +G+  
Sbjct: 189 AYIIKYHLDFDTSVGSALCSLYSKCGRLEDALKAFSRIREKNVISWTSAVSACGDNGAPV 248

Query: 297 ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALI 356
           + L +F +M SE   PN FT TS ++ C  + +L  G QV +  ++ G + NL + N+L+
Sbjct: 249 KGLRLFVEMISEDIKPNEFTLTSALSQCCEIPSLELGTQVCSLCIKFGYESNLRVRNSLL 308

Query: 357 DMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG-----------AHGHGKEAIELFDE 405
            +Y K G I ++ + F+ M D  +VTW +M+ G+            A   G EA+++F +
Sbjct: 309 YLYLKSGFIVEAHRFFNRMDDVSMVTWNAMIAGHAQMMELTKDNLSACQRGSEALKIFSK 368

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEG 434
           + +SG++PD     +VL+ CS    +++G
Sbjct: 369 LNQSGMKPDLFTLSSVLSVCSRMLAIEQG 397



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 127/262 (48%), Gaps = 18/262 (6%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSF---------NCH--NQAWTV 99
           +L+  Y   G I EA   F+ M +  +V+W  MIAG+             C   ++A  +
Sbjct: 306 SLLYLYLKSGFIVEAHRFFNRMDDVSMVTWNAMIAGHAQMMELTKDNLSACQRGSEALKI 365

Query: 100 FVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
           F ++ ++ + P+ FTLSSVL  C  M ++     +H   IK G    + V  SL+ +Y  
Sbjct: 366 FSKLNQSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYNK 425

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
           C  S++ A   F +M  +  ++WT++ITG++  G     L +F++M L GV  N  +F  
Sbjct: 426 CG-SIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNTVTFVG 484

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNS---ILDMYCRFDCLSDANQYFDEMT 276
            + AC+  G VS   L +  +++  +    PVM+    ++DM+ R   L  A  +  +M 
Sbjct: 485 VLSACSHAGMVS-QALNYFEIMQKKYKIK-PVMDHYECMVDMFVRLGRLEQALNFIKKMN 542

Query: 277 -EKDLITWNTIIAGYEKSGSSE 297
            E     W+  IAG    G+ E
Sbjct: 543 YEPSEFIWSNFIAGCRSHGNLE 564



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 104/200 (52%), Gaps = 3/200 (1%)

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           +  ++  C    + S  Q VH  +++ G   N  + + L+++YAKCGN+ D++++F  M 
Sbjct: 67  YVPLLQQCLDKRSYSGTQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFENMP 126

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
            R++V WT++M+G+  +   K AI +F EM+ +G  P      AVL ACS    +  G +
Sbjct: 127 RRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSIYTLSAVLHACSSLQSLKLGDQ 186

Query: 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR 496
           +   +  Y+++ +  +   +  L  + GR+++A +    +  K   S W   + AC ++ 
Sbjct: 187 FHAYIIKYHLDFDTSVGSALCSLYSKCGRLEDALKAFSRIREKNVIS-WTSAVSACGDNG 245

Query: 497 LPNLGKLAALRVL--DLKPN 514
            P  G    + ++  D+KPN
Sbjct: 246 APVKGLRLFVEMISEDIKPN 265



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 72/168 (42%), Gaps = 15/168 (8%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I++T+LI  Y   G IE A   F EM  R +++WT MI G++      QA  +F +M   
Sbjct: 414 IVSTSLISMYNKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLA 473

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM-- 164
            V PN  T   VL AC     +S A     +  K+      Y    +MD Y  C + M  
Sbjct: 474 GVRPNTVTFVGVLSACSHAGMVSQALNYFEIMQKK------YKIKPVMDHYE-CMVDMFV 526

Query: 165 -----DNARLVFNDMKWK-NDVSWTTLITGYAHSGNGYGGLGVFKEML 206
                + A      M ++ ++  W+  I G    GN   G    +++L
Sbjct: 527 RLGRLEQALNFIKKMNYEPSEFIWSNFIAGCRSHGNLELGFYASEQLL 574


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  361 bits (927), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 192/549 (34%), Positives = 317/549 (57%), Gaps = 9/549 (1%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           ART+FD M ERD++SW  +IAG        +A  +F++++R  + P+ +T++SVLKA   
Sbjct: 369 ARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASS 428

Query: 125 M-KSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT--CCISMDNARLVFNDMKWKNDVS 181
           + + LS +  VH  AIK       +V  +L+D Y+   C   M  A ++F    + + V+
Sbjct: 429 LPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRC---MKEAEILFERHNF-DLVA 484

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           W  ++ GY  S +G+  L +F  M  +G   + ++ +   + C     ++ GK +HA  I
Sbjct: 485 WNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAI 544

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLN 300
           K G+  +L V + ILDMY +   +S A   FD +   D + W T+I+G  ++G  E   +
Sbjct: 545 KSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFH 604

Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360
           +FS+M+     P+ FT  ++  A + L AL  G+Q+HA  ++     +  +  +L+DMYA
Sbjct: 605 VFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYA 664

Query: 361 KCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420
           KCG+I D+  +F  +   ++  W +M++G   HG GKE ++LF +M   G++PD++ F+ 
Sbjct: 665 KCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIG 724

Query: 421 VLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
           VL+ACSH+GLV E  K+ +SM+ DY + P  E Y C+ D LGRAG VK+A  LI+SM  +
Sbjct: 725 VLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSME 784

Query: 480 PDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFR 539
              S++  LL AC+       GK  A ++L+L+P     Y++LSN+YAA  KW+E    R
Sbjct: 785 ASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLAR 844

Query: 540 KIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDID 599
            +M+G   KK+ G SWIEV++K+  F+ +D+    T+ +Y  ++ +IR + +  Y P+ D
Sbjct: 845 TMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETD 904

Query: 600 CLIHDLEGE 608
             + D+E E
Sbjct: 905 FTLVDVEEE 913



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 126/457 (27%), Positives = 228/457 (49%), Gaps = 9/457 (1%)

Query: 100 FVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
           F +MV ++V  +  T   +L     + SL+    VH MA+K GL+  + V NSL+++Y  
Sbjct: 303 FADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCK 362

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
                  AR VF++M  ++ +SW ++I G A +G     + +F ++L  G++ + Y+ + 
Sbjct: 363 -LRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTS 421

Query: 220 AVRACAS-TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK 278
            ++A +S    +S  K +H   IK    S+  V  +++D Y R  C+ +A   F E    
Sbjct: 422 VLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILF-ERHNF 480

Query: 279 DLITWNTIIAGYEKS-GSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
           DL+ WN ++AGY +S    + L +F+ M  +    + FT  ++   C  L A++ G+QVH
Sbjct: 481 DLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVH 540

Query: 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
           A  ++ G D +L +++ ++DMY KCG++S +Q  F  +   D V WT+M+ G   +G  +
Sbjct: 541 AYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEE 600

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVV 457
            A  +F +M   GV PD      +  A S    +++G +   +    N   +  +   +V
Sbjct: 601 RAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLV 660

Query: 458 DLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH--RLPNLGKLAALRVLDLKPNM 515
           D+  + G + +AY L K +    + + W  +L    +H      L     ++ L +KP+ 
Sbjct: 661 DMYAKCGSIDDAYCLFKRIEMM-NITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDK 719

Query: 516 MGTYIILSNIYAAEGKWEEFAKFRKIMRG-MGSKKEV 551
           + T+I + +  +  G   E  K  + M G  G K E+
Sbjct: 720 V-TFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEI 755



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 120/458 (26%), Positives = 208/458 (45%), Gaps = 45/458 (9%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   +A  L+  Y   G ++E + LF+EMP RDVV W +M+  Y       +A  +    
Sbjct: 178 GDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAF 237

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
             + +NPN  TL  +L    G  S  +A  V   A   G + S   E             
Sbjct: 238 HSSGLNPNEITLR-LLARISGDDS--DAGQVKSFA--NGNDASSVSE------------- 279

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
                ++F +            ++ Y HSG     L  F +M+   VE +  +F + +  
Sbjct: 280 -----IIFRNKG----------LSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLAT 324

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
                 ++ G+ +H   +K G    L V NS+++MYC+      A   FD M+E+DLI+W
Sbjct: 325 AVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISW 384

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLA-ALSCGQQVHAGIV 341
           N++IAG  ++G   E + +F ++      P+ +T TS++ A ++L   LS  +QVH   +
Sbjct: 385 NSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAI 444

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           +     +  ++ ALID Y++   + +++ +F E  + DLV W +MM GY     G + ++
Sbjct: 445 KINNVSDSFVSTALIDAYSRNRCMKEAEILF-ERHNFDLVAWNAMMAGYTQSHDGHKTLK 503

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE----IYGCVV 457
           LF  M K G R D      V   C     +++G    K ++ Y +    +    +   ++
Sbjct: 504 LFALMHKQGERSDDFTLATVFKTCGFLFAINQG----KQVHAYAIKSGYDLDLWVSSGIL 559

Query: 458 DLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           D+  + G +  A     S+P  PD+  W  ++  C E+
Sbjct: 560 DMYVKCGDMSAAQFAFDSIPV-PDDVAWTTMISGCIEN 596



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 124/471 (26%), Positives = 211/471 (44%), Gaps = 49/471 (10%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYT-SFNCH----NQAWTVFV 101
            L  NLI  Y   G +  AR +FD+MP+RD+VSW  ++A Y  S  C      QA+ +F 
Sbjct: 75  FLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFR 134

Query: 102 EMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
            + ++ V  +  TLS +LK C     +  +   HG A K GL+G  +V  +L+++Y    
Sbjct: 135 ILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFG 194

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
             +   +++F +M +++ V W  ++  Y   G     + +       G+  N  +  +  
Sbjct: 195 -KVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITLRLLA 253

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
           R          G    A  +K     N                        D  +  ++I
Sbjct: 254 RIS--------GDDSDAGQVKSFANGN------------------------DASSVSEII 281

Query: 282 TWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
             N  ++ Y  SG  S  L  F+ M       +  TF  ++A    + +L+ GQQVH   
Sbjct: 282 FRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMA 341

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           ++ GLD  L ++N+LI+MY K      ++ +F  MS+RDL++W S++ G   +G   EA+
Sbjct: 342 LKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAV 401

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE----IYGCV 456
            LF ++++ G++PD+    +VL A S    + EGL   K ++ + +  N      +   +
Sbjct: 402 CLFMQLLRCGLKPDQYTMTSVLKAASS---LPEGLSLSKQVHVHAIKINNVSDSFVSTAL 458

Query: 457 VDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL-GACKEHRLPNLGKLAAL 506
           +D   R   +KEA  L +   F  D   W  ++ G  + H      KL AL
Sbjct: 459 IDAYSRNRCMKEAEILFERHNF--DLVAWNAMMAGYTQSHDGHKTLKLFAL 507



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 105/206 (50%), Gaps = 10/206 (4%)

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           +R   ++  +  GK  HA ++         ++N+++ MY +   L+ A + FD+M ++DL
Sbjct: 46  LRNAITSSDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDL 105

Query: 281 ITWNTIIAGYEKSGSSECLN--------MFSKMKSERFSPNCFTFTSIIAACATLAALSC 332
           ++WN+I+A Y +S  SEC+         +F  ++ +    +  T + ++  C     +  
Sbjct: 106 VSWNSILAAYAQS--SECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWA 163

Query: 333 GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA 392
            +  H    + GLDG+  +A AL+++Y K G + + + +F EM  RD+V W  M+  Y  
Sbjct: 164 SESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLE 223

Query: 393 HGHGKEAIELFDEMVKSGVRPDRIVF 418
            G  +EAI+L      SG+ P+ I  
Sbjct: 224 MGFKEEAIDLSSAFHSSGLNPNEITL 249



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 87/171 (50%), Gaps = 6/171 (3%)

Query: 326 TLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTS 385
           T + L  G+  HA I+    +    L N LI MY+KCG+++ ++++F +M DRDLV+W S
Sbjct: 51  TSSDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNS 110

Query: 386 MMIGYGAHGHG-----KEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS 440
           ++  Y           ++A  LF  + +  V   R+    +L  C H+G V     +   
Sbjct: 111 ILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGY 170

Query: 441 MNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
                ++ ++ + G +V++  + G+VKE   L + MP++ D  +W  +L A
Sbjct: 171 ACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYR-DVVLWNLMLKA 220


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  361 bits (926), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 182/497 (36%), Positives = 290/497 (58%), Gaps = 7/497 (1%)

Query: 117 SVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNARLVFNDMK 175
           ++L AC   ++L +   VH   IK     + Y+   L+  Y  C C  +++AR V ++M 
Sbjct: 57  ALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDC--LEDARKVLDEMP 114

Query: 176 WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKL 235
            KN VSWT +I+ Y+ +G+    L VF EM+    + N ++F+  + +C     +  GK 
Sbjct: 115 EKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQ 174

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG- 294
           IH  ++K  + S++ V +S+LDMY +   + +A + F+ + E+D+++   IIAGY + G 
Sbjct: 175 IHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGL 234

Query: 295 SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
             E L MF ++ SE  SPN  T+ S++ A + LA L  G+Q H  ++RR L     L N+
Sbjct: 235 DEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNS 294

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV-KSGVRP 413
           LIDMY+KCGN+S ++++F  M +R  ++W +M++GY  HG G+E +ELF  M  +  V+P
Sbjct: 295 LIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKP 354

Query: 414 DRIVFMAVLTACSHAGLVDEGLKYFKSM--NDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471
           D +  +AVL+ CSH  + D GL  F  M   +Y   P  E YGC+VD+LGRAGR+ EA+E
Sbjct: 355 DAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFE 414

Query: 472 LIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK 531
            IK MP KP   V G LLGAC+ H   ++G+    R+++++P   G Y+ILSN+YA+ G+
Sbjct: 415 FIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGR 474

Query: 532 WEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNE 591
           W +    R +M      KE G SWI+    +  F AND+     + V   ++ +   M +
Sbjct: 475 WADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQ 534

Query: 592 TAYEPDIDCLIHDLEGE 608
             Y PD+ C+++D++ E
Sbjct: 535 AGYVPDLSCVLYDVDEE 551



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 103/337 (30%), Positives = 171/337 (50%), Gaps = 5/337 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + L T L+  Y     +E+AR + DEMPE++VVSWT MI+ Y+     ++A TVF EM+R
Sbjct: 87  TYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMR 146

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           ++  PN FT ++VL +C     L     +HG+ +K   +  I+V +SL+D+YA     + 
Sbjct: 147 SDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAG-QIK 205

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            AR +F  +  ++ VS T +I GYA  G     L +F  +  EG+  N  +++  + A +
Sbjct: 206 EAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALS 265

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               +  GK  H  V++        + NS++DMY +   LS A + FD M E+  I+WN 
Sbjct: 266 GLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNA 325

Query: 286 IIAGYEKSG-SSECLNMFSKMKSE-RFSPNCFTFTSIIAACATLAALSCGQQVHAGIV-- 341
           ++ GY K G   E L +F  M+ E R  P+  T  ++++ C+       G  +  G+V  
Sbjct: 326 MLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAG 385

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR 378
             G          ++DM  + G I ++ +    M  +
Sbjct: 386 EYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSK 422



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 100/346 (28%), Positives = 183/346 (52%), Gaps = 17/346 (4%)

Query: 200 GVFKEMLLE----GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSI 255
           G  +E LLE    G EM  + +   + AC     +  G+ +HA +IK  +     +   +
Sbjct: 34  GRLQEALLEMAMLGPEMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRL 93

Query: 256 LDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNC 314
           L  Y + DCL DA +  DEM EK++++W  +I+ Y ++G SSE L +F++M      PN 
Sbjct: 94  LIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNE 153

Query: 315 FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSE 374
           FTF +++ +C   + L  G+Q+H  IV+   D ++ + ++L+DMYAK G I ++++IF  
Sbjct: 154 FTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFEC 213

Query: 375 MSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434
           + +RD+V+ T+++ GY   G  +EA+E+F  +   G+ P+ + + ++LTA S   L+D G
Sbjct: 214 LPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHG 273

Query: 435 LKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKE 494
            +    +    +     +   ++D+  + G +  A  L  +MP +   S W  +L    +
Sbjct: 274 KQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAIS-WNAMLVGYSK 332

Query: 495 HRLPNLGK--LAALRVL----DLKPNMMGTYIILSNIYAAEGKWEE 534
           H    LG+  L   R++     +KP+ +    +LS    + G+ E+
Sbjct: 333 H---GLGREVLELFRLMRDEKRVKPDAVTLLAVLSG--CSHGRMED 373


>gi|15240444|ref|NP_198063.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635756|sp|O04659.2|PP398_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g27110
 gi|332006268|gb|AED93651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  360 bits (925), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 196/548 (35%), Positives = 318/548 (58%), Gaps = 8/548 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++A++L+  Y    L E +  +FDEMPERDV SW  +I+ +       +A  +F  M  +
Sbjct: 143 VVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALELFGRMESS 202

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMD 165
              PN+ +L+  + AC  +  L     +H   +K+G E   YV ++L+D+Y  C C+ + 
Sbjct: 203 GFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEV- 261

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            AR VF  M  K+ V+W ++I GY   G+    + +   M++EG   +  + +  + AC+
Sbjct: 262 -AREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACS 320

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI-TWN 284
            +  +  GK IH  VI+    +++ V  S++D+Y +    + A   F + T+KD+  +WN
Sbjct: 321 RSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSK-TQKDVAESWN 379

Query: 285 TIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +I+ Y   G+  + + ++ +M S    P+  TFTS++ AC+ LAAL  G+Q+H  I   
Sbjct: 380 VMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISES 439

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
            L+ +  L +AL+DMY+KCGN  ++ +IF+ +  +D+V+WT M+  YG+HG  +EA+  F
Sbjct: 440 RLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQF 499

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGR 462
           DEM K G++PD +  +AVL+AC HAGL+DEGLK+F  M + Y + P  E Y C++D+LGR
Sbjct: 500 DEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIEHYSCMIDILGR 559

Query: 463 AGRVKEAYELIKSMPFKPDES-VWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           AGR+ EAYE+I+  P   D + +   L  AC  H   +LG   A  +++  P+   TY++
Sbjct: 560 AGRLLEAYEIIQQTPETSDNAELLSTLFSACCLHLEHSLGDRIARLLVENYPDDASTYMV 619

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGV 581
           L N+YA+   W+   + R  M+ MG +K+ G SWIE+ DKVC F A D+     + VY  
Sbjct: 620 LFNLYASGESWDAARRVRLKMKEMGLRKKPGCSWIEMSDKVCHFFAEDRSHLRAENVYEC 679

Query: 582 LEMLIRHM 589
           L +L  HM
Sbjct: 680 LALLSGHM 687



 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 147/503 (29%), Positives = 264/503 (52%), Gaps = 8/503 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPER-DVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           +L  +LI  YF       AR +F+    R DV  W  +++GY+  +  +    VF  ++ 
Sbjct: 40  VLCKSLINVYFTCKDHCSARHVFENFDIRSDVYIWNSLMSGYSKNSMFHDTLEVFKRLLN 99

Query: 106 NEVN-PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
             +  P++FT  +V+KA   +       ++H + +K G    + V +SL+ +YA   +  
Sbjct: 100 CSICVPDSFTFPNVIKAYGALGREFLGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNL-F 158

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           +N+  VF++M  ++  SW T+I+ +  SG     L +F  M   G E N  S ++A+ AC
Sbjct: 159 ENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISAC 218

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           +   W+  GK IH   +K GF  +  V ++++DMY + DCL  A + F +M  K L+ WN
Sbjct: 219 SRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWN 278

Query: 285 TIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           ++I GY   G S+ C+ + ++M  E   P+  T TSI+ AC+    L  G+ +H  ++R 
Sbjct: 279 SMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRS 338

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
            ++ ++ +  +LID+Y KCG  + ++ +FS+       +W  M+  Y + G+  +A+E++
Sbjct: 339 VVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVY 398

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
           D+MV  GV+PD + F +VL ACS    +++G +   S+++  +  ++ +   ++D+  + 
Sbjct: 399 DQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKC 458

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNMMGTYII 521
           G  KEA+ +  S+P K D   W  ++ A   H  P   L +   ++   LKP+ +    +
Sbjct: 459 GNEKEAFRIFNSIP-KKDVVSWTVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAV 517

Query: 522 LSNIYAAEGKWEEFAKFRKIMRG 544
           LS    A G  +E  KF   MR 
Sbjct: 518 LSACGHA-GLIDEGLKFFSQMRS 539



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 122/388 (31%), Positives = 213/388 (54%), Gaps = 20/388 (5%)

Query: 115 LSSVLKAC-KGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC---CISMDNARLV 170
           L S+L+ C    KSL    LVH   +  GL   + +  SL++VY TC   C    +AR V
Sbjct: 6   LLSLLRECTNSTKSLRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHC----SARHV 61

Query: 171 FNDMKWKNDVS-WTTLITGYAHSGNGYGGLGVFKEMLLEGVEM-NPYSFSIAVRACASTG 228
           F +   ++DV  W +L++GY+ +   +  L VFK +L   + + + ++F   ++A  + G
Sbjct: 62  FENFDIRSDVYIWNSLMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALG 121

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
               G++IH  V+K G+  ++ V +S++ MY +F+   ++ Q FDEM E+D+ +WNT+I+
Sbjct: 122 REFLGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVIS 181

Query: 289 GYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
            + +SG +E  L +F +M+S  F PN  + T  I+AC+ L  L  G+++H   V++G + 
Sbjct: 182 CFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFEL 241

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           +  + +AL+DMY KC  +  ++++F +M  + LV W SM+ GY A G  K  +E+ + M+
Sbjct: 242 DEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMI 301

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP--NKEIY-GC-VVDLLGRA 463
             G RP +    ++L ACS +      L + K ++ Y +    N +IY  C ++DL  + 
Sbjct: 302 IEGTRPSQTTLTSILMACSRS----RNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKC 357

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGA 491
           G    A E + S   K     W  ++ +
Sbjct: 358 GEANLA-ETVFSKTQKDVAESWNVMISS 384


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  360 bits (925), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 200/564 (35%), Positives = 319/564 (56%), Gaps = 5/564 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L   LI +Y   G +  AR +FDE+P R +V+W  MIA Y       +A  ++  MV + 
Sbjct: 112 LGNKLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDG 171

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGS-IYVENSLMDVYATCCISMDN 166
           + P+ FT SSV KA   +  +      HG ++  G+  S ++V ++L+D+YA     M +
Sbjct: 172 ILPDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFG-KMRD 230

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           ARLV + +  K+ V +T LI GY+H G     L VF+ M  +G+E N Y+ S  +  C +
Sbjct: 231 ARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGN 290

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              ++ G+LIH  ++K G  S +    S+L MY R   + D+ + F +    + +TW ++
Sbjct: 291 LEDLTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFKQFINPNQVTWTSV 350

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I G  ++G  E  L  F +M     +PN FT +S++ AC++LA L  G+Q+HA +++ GL
Sbjct: 351 IVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGL 410

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           D +  +  ALID Y KCG+   ++ +F+ + + D+V+  SM+  Y  +G G EA++LF  
Sbjct: 411 DIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSG 470

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS-MNDYNVNPNKEIYGCVVDLLGRAG 464
           M  +G+ P+ + ++ VL+AC++AGL++EG   F S  N  N+   K+ Y C+VDLLGRAG
Sbjct: 471 MKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNIELTKDHYACMVDLLGRAG 530

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           R+KEA  LI  +    D  +W  LL AC+ H    + K    RV+DL P   GT+++LSN
Sbjct: 531 RLKEAEMLINQVNI-SDVVIWRTLLSACRIHGDVEMAKRVMNRVIDLAPEDGGTHVLLSN 589

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           +YA+ G W +  + +  MR M  KK   MSW++V  ++  F+A D    + + +   LE 
Sbjct: 590 LYASTGNWSKVIEMKSAMREMRLKKNPAMSWVDVEREIHTFMAGDWSHPNFRDIREKLEE 649

Query: 585 LIRHMNETAYEPDIDCLIHDLEGE 608
           LI  + E  Y PD   ++ DL+ E
Sbjct: 650 LIEKVKELGYVPDTRFVLQDLDEE 673



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 198/363 (54%), Gaps = 5/363 (1%)

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMK 175
           SS+++ C G+KS+++   +   A+K G   S+   N L+D Y  C  S+  AR VF+++ 
Sbjct: 81  SSLIQQCIGIKSITDITKIQSHALKRGFHHSL--GNKLIDAYLKCG-SVVYARKVFDEVP 137

Query: 176 WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKL 235
            ++ V+W ++I  Y  +G     + +++ M+ +G+  + ++FS   +A +  G V  G+ 
Sbjct: 138 HRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLGLVHEGQR 197

Query: 236 IHAAVIKHGFG-SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG 294
            H   +  G G SN+ V ++++DMY +F  + DA    D++  KD++ +  +I GY   G
Sbjct: 198 AHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHG 257

Query: 295 SS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353
              E L +F  M  +    N +T +S++  C  L  L+ G+ +H  IV+ GL+  +A   
Sbjct: 258 EDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVASQT 317

Query: 354 ALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP 413
           +L+ MY +CG + DS K+F +  + + VTWTS+++G   +G  + A+  F +M++S + P
Sbjct: 318 SLLTMYYRCGLVDDSLKVFKQFINPNQVTWTSVIVGLVQNGREEIALLKFRQMLRSSITP 377

Query: 414 DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELI 473
           +     +VL ACS   ++++G +    +  + ++ +K +   ++D  G+ G  + A  + 
Sbjct: 378 NSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVF 437

Query: 474 KSM 476
             +
Sbjct: 438 NGL 440



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 93/180 (51%), Gaps = 4/180 (2%)

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           ++S+I  C  + +++   ++ +  ++RG   + +L N LID Y KCG++  ++K+F E+ 
Sbjct: 80  YSSLIQQCIGIKSITDITKIQSHALKRGF--HHSLGNKLIDAYLKCGSVVYARKVFDEVP 137

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
            R +V W SM+  Y  +G  KEAI+++  MV  G+ PD   F +V  A S  GLV EG +
Sbjct: 138 HRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLGLVHEGQR 197

Query: 437 YFKSMNDYNVNPNKEIYG-CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
                    V  +    G  +VD+  + G++++A  L+       D  ++  L+     H
Sbjct: 198 AHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDA-RLVSDQVVGKDVVLFTALIVGYSHH 256


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  360 bits (925), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 202/568 (35%), Positives = 308/568 (54%), Gaps = 7/568 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +   LI  Y   G I+ AR++F  M ++D VSW  MI G     C   A   +  M +  
Sbjct: 140 VGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTG 199

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + P+ F L S L +C  +  +      HG  IK GL+  + V N+L+ +YA     +   
Sbjct: 200 LMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETS-RLAEC 258

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYG-GLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           + VF+ M  ++ VSW T+I   A SG      + VF EM+  G   N  +F   +   +S
Sbjct: 259 QKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSS 318

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLITWNT 285
                    IHA ++K+    +  + N++L  Y +   + +  + F  M+E+ D ++WN+
Sbjct: 319 LSTSKLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNS 378

Query: 286 IIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I+GY       + +++   M       +CFTF ++++ACAT+A L CG +VHA  +R  
Sbjct: 379 MISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIRAC 438

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           L+ ++ + +AL+DMY+KCG I  + + F+ M  R+L +W SM+ GY  HGHG  A+ LF 
Sbjct: 439 LESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFT 498

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRA 463
            M  SG  PD I F+ VL+ACSH GLVDEG +YFKSM + Y + P  E Y C+VDLLGRA
Sbjct: 499 RMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRA 558

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGAC--KEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           G + +    I  MP KP+  +W  +LGAC     R   LG+ AA  + ++ P     Y++
Sbjct: 559 GELDKIENFINKMPIKPNILIWRTVLGACCRGNGRKTELGRRAAEMLFNMDPQNAVNYVL 618

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGV 581
           LSN+YA+ GKWE+ A+ R+ MR    KKE G SW+ ++D V  F+A D        +Y  
Sbjct: 619 LSNMYASGGKWEDMARTRRAMREAAVKKEAGCSWVTMKDGVHVFVAGDNSHPEKGLIYAK 678

Query: 582 LEMLIRHMNETAYEPDIDCLIHDLEGET 609
           L+ L + + +  Y P I   ++DLE E 
Sbjct: 679 LKELDKKIRDAGYVPQIKFALYDLEPEN 706



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 142/454 (31%), Positives = 231/454 (50%), Gaps = 7/454 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            L   LI  Y   G    AR LFDEMP+R+ V+W  +I+GYT       A  V  EM+  
Sbjct: 36  FLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVLKEMIFE 95

Query: 107 EVNPNAFTLSSVLKACK-GMKSLSNAALVHGMAIKEGL-EGSIYVENSLMDVYATCCISM 164
              PN F   S ++AC+  M        VHG AI+ GL +  + V N L+++YA C   +
Sbjct: 96  GFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCG-DI 154

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           D+AR VF  M  K+ VSW ++ITG   +      +  +  M   G+  + ++   A+ +C
Sbjct: 155 DHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSC 214

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           AS G +  G+  H   IK G   ++ V N++L +Y     L++  + F  M E+D ++WN
Sbjct: 215 ASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWN 274

Query: 285 TIIAGYEKSGS--SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           T+I     SG+  SE + +F +M    +SPN  TF +++A  ++L+      Q+HA I++
Sbjct: 275 TVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILK 334

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD-RDLVTWTSMMIGYGAHGHGKEAIE 401
             +  + A+ NAL+  Y K G + + ++IFS MS+ RD V+W SM+ GY  +    +A++
Sbjct: 335 YNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMD 394

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461
           L   M++ G R D   F  VL+AC+    ++ G++         +  +  I   +VD+  
Sbjct: 395 LVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIRACLESDVVIGSALVDMYS 454

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           + GR+  A      MP +   S W  ++     H
Sbjct: 455 KCGRIDYASRFFNLMPVRNLYS-WNSMISGYARH 487



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 108/366 (29%), Positives = 197/366 (53%), Gaps = 9/366 (2%)

Query: 130 NAALVHGMAIKEGLEGSIYVENSLMDVYATC--CISMDNARLVFNDMKWKNDVSWTTLIT 187
           +A L H   +K G +  +++ N+L++VY     C+S   AR +F++M  +N V+W  LI+
Sbjct: 18  DANLFHLNVLKHGFDSDLFLCNTLINVYVRIGDCVS---ARKLFDEMPDRNGVTWACLIS 74

Query: 188 GYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA-STGWVSFGKLIHAAVIKHGFG 246
           GY  +G      GV KEM+ EG   N ++F  A+RAC  S  W   G+ +H   I+ G  
Sbjct: 75  GYTQNGMPEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLN 134

Query: 247 -SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSK 304
            + + V N +++MY +   +  A   F  M +KD ++WN++I G +++   E  +  ++ 
Sbjct: 135 DAKVAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNS 194

Query: 305 MKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGN 364
           M+     P+ F   S +++CA+L  +  GQQ H   ++ GLD +++++N L+ +YA+   
Sbjct: 195 MRKTGLMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSR 254

Query: 365 ISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHG-KEAIELFDEMVKSGVRPDRIVFMAVLT 423
           +++ QK+FS M +RD V+W +++      G    EAIE+F EM+++G  P+R+ F+ +L 
Sbjct: 255 LAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLA 314

Query: 424 ACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDES 483
             S         +    +  YNV  +  I   ++   G++G ++   E+   M  + DE 
Sbjct: 315 TVSSLSTSKLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEV 374

Query: 484 VWGPLL 489
            W  ++
Sbjct: 375 SWNSMI 380



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/263 (31%), Positives = 146/263 (55%), Gaps = 6/263 (2%)

Query: 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRF-DCLSDANQYFDEMTEKDLITWNTIIAGYE 291
             L H  V+KHGF S+L + N+++++Y R  DC+S A + FDEM +++ +TW  +I+GY 
Sbjct: 19  ANLFHLNVLKHGFDSDLFLCNTLINVYVRIGDCVS-ARKLFDEMPDRNGVTWACLISGYT 77

Query: 292 KSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACA-TLAALSCGQQVHAGIVRRGL-DGN 348
           ++G  E    +  +M  E F PN F F S I AC  ++     G+QVH   +R GL D  
Sbjct: 78  QNGMPEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAK 137

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           +A+ N LI+MYAKCG+I  ++ +F  M D+D V+W SM+ G   +   ++A++ ++ M K
Sbjct: 138 VAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRK 197

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKE 468
           +G+ P     ++ L++C+  G +  G +         ++ +  +   ++ L     R+ E
Sbjct: 198 TGLMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAE 257

Query: 469 AYELIKSMPFKPDESVWGPLLGA 491
             ++   M  + D+  W  ++GA
Sbjct: 258 CQKVFSWM-LERDQVSWNTVIGA 279



 Score = 45.8 bits (107), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 37/76 (48%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++ + L+  Y   G I+ A   F+ MP R++ SW  MI+GY      + A  +F  M  +
Sbjct: 444 VIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFTRMKLS 503

Query: 107 EVNPNAFTLSSVLKAC 122
              P+  T   VL AC
Sbjct: 504 GQLPDHITFVGVLSAC 519


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  360 bits (925), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 204/579 (35%), Positives = 319/579 (55%), Gaps = 36/579 (6%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           A ++F  + E + + W  M+ GY   +    A  ++V M+   + PN++T   +LK+C  
Sbjct: 19  AISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAK 78

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTT 184
            K+      +HG  +K G E  +YV  SL+ +YA     +++A  VF+    ++ VS+T 
Sbjct: 79  SKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNG-RLEDAHKVFDRSSHRDVVSYTA 137

Query: 185 LITGYAHSGN------------------------GYGGLG-------VFKEMLLEGVEMN 213
           LITGYA SGN                        GY   G       +FKEM+   V  +
Sbjct: 138 LITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPD 197

Query: 214 PYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFD 273
             +    + ACA +  V  G+ +H+ +  HGFGSNL ++N+++D+Y +   +  A   F+
Sbjct: 198 EGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFE 257

Query: 274 EMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSC 332
            ++ KD+++WNT+I GY       E L +F +M     SPN  T  SI+ ACA L A+  
Sbjct: 258 GLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDI 317

Query: 333 GQQVHAGIVRRGLDGNLA--LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY 390
           G+ +H  I ++  D   A  L  +LIDMYAKCG+I  + ++F+ M  + L +W +M+ G+
Sbjct: 318 GRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGF 377

Query: 391 GAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPN 449
             HG      +LF  M K+G+ PD I F+ +L+ACSH+G +D G   FKSM  DY++ P 
Sbjct: 378 AMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPK 437

Query: 450 KEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVL 509
            E YGC++DLLG +G  KEA E+IK+MP +PD  +W  LL AC+ H    L +  A  ++
Sbjct: 438 LEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLM 497

Query: 510 DLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIAND 569
            ++P   G+Y++LSNIYA  G+W+E AK R ++ G G KK  G S IE+  +V  FI  D
Sbjct: 498 KVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDSEVHEFIVGD 557

Query: 570 KMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           K+    + +YG+LE +   + E  + PD   ++ ++E E
Sbjct: 558 KLHPRNREIYGMLEEMEALLEEAGFVPDTSEVLQEMEEE 596



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 119/412 (28%), Positives = 200/412 (48%), Gaps = 12/412 (2%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T LI  Y   G I  A+ +FDE+P +DVVSW  MI+GY     + +A  +F EM++  V 
Sbjct: 136 TALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVR 195

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P+  T+ +VL AC   +S+     VH      G   ++ + N+L+D+Y+ C   ++ A  
Sbjct: 196 PDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCG-QVETACG 254

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           +F  +  K+ VSW TLI GY H       L +F+EML  G   N  +    + ACA  G 
Sbjct: 255 LFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGA 314

Query: 230 VSFGKLIHAAVIKHGFG-SNLPVM-NSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
           +  G+ IH  + K     +N P +  S++DMY +   +  A+Q F+ M  K L +WN +I
Sbjct: 315 IDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMI 374

Query: 288 AGYEKSGSSEC-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-GL 345
            G+   G +    ++FS+M+     P+  TF  +++AC+    L  G+ +   + +   +
Sbjct: 375 FGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDI 434

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEAIELFD 404
              L     +ID+    G   +++++   M  + D V W S++     HG+ + A     
Sbjct: 435 TPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFAR 494

Query: 405 EMVK-SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455
            ++K     P   V ++ + A   AG  DE  K    +N   +   K++ GC
Sbjct: 495 NLMKVEPENPGSYVLLSNIYAT--AGEWDEVAKVRALLNGKGM---KKVPGC 541



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 128/263 (48%), Gaps = 33/263 (12%)

Query: 261 RFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTS 319
            FD    A   F  + E + + WNT++ GY  S      L ++  M S    PN +TF  
Sbjct: 12  HFDGFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPF 71

Query: 320 IIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK------------------ 361
           ++ +CA   A   GQQ+H  +++ G + +L +  +LI MYA+                  
Sbjct: 72  LLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRD 131

Query: 362 -------------CGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
                         GNI  +Q++F E+  +D+V+W +M+ GY   G  KEA+ELF EM+K
Sbjct: 132 VVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMK 191

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKE 468
           + VRPD    + VL+AC+ +  V+ G +    ++D+    N +I   ++DL  + G+V+ 
Sbjct: 192 TNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVET 251

Query: 469 AYELIKSMPFKPDESVWGPLLGA 491
           A  L + +  K D   W  L+G 
Sbjct: 252 ACGLFEGLSCK-DVVSWNTLIGG 273


>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15130
 gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  360 bits (925), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 190/552 (34%), Positives = 315/552 (57%), Gaps = 8/552 (1%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           A  +FD MPER+VVSW+ +++G+        + ++F EM R  + PN FT S+ LKAC  
Sbjct: 60  AYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGL 119

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTT 184
           + +L     +HG  +K G E  + V NSL+D+Y+ C   ++ A  VF  +  ++ +SW  
Sbjct: 120 LNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCG-RINEAEKVFRRIVDRSLISWNA 178

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA--VRACASTGWVSFGKLIHAAVIK 242
           +I G+ H+G G   L  F  M    ++  P  F++   ++AC+STG +  GK IH  +++
Sbjct: 179 MIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVR 238

Query: 243 HGFG--SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECL 299
            GF   S+  +  S++D+Y +   L  A + FD++ EK +I+W+++I GY + G   E +
Sbjct: 239 SGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAM 298

Query: 300 NMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMY 359
            +F +++      + F  +SII   A  A L  G+Q+ A  V+       ++ N+++DMY
Sbjct: 299 GLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMY 358

Query: 360 AKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFM 419
            KCG + +++K F+EM  +D+++WT ++ GYG HG GK+++ +F EM++  + PD + ++
Sbjct: 359 LKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYL 418

Query: 420 AVLTACSHAGLVDEGLKYF-KSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPF 478
           AVL+ACSH+G++ EG + F K +  + + P  E Y CVVDLLGRAGR+KEA  LI +MP 
Sbjct: 419 AVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPI 478

Query: 479 KPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKF 538
           KP+  +W  LL  C+ H    LGK     +L +       Y+++SN+Y   G W E    
Sbjct: 479 KPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNA 538

Query: 539 RKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNET-AYEPD 597
           R++    G KKE GMSW+E+  +V  F + +     T  +   L+   R + E   Y   
Sbjct: 539 RELGNIKGLKKEAGMSWVEIEREVHFFRSGEDSHPLTPVIQETLKEAERRLREELGYVYG 598

Query: 598 IDCLIHDLEGET 609
           +   +HD++ E+
Sbjct: 599 LKHELHDIDDES 610



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 107/389 (27%), Positives = 196/389 (50%), Gaps = 7/389 (1%)

Query: 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFND 173
            L S+L+ C           VH   +K G   ++   N L+D+Y  C   +  A  VF+ 
Sbjct: 8   NLVSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPL-MAYKVFDS 66

Query: 174 MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG 233
           M  +N VSW+ L++G+  +G+  G L +F EM  +G+  N ++FS  ++AC     +  G
Sbjct: 67  MPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKG 126

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
             IH   +K GF   + V NS++DMY +   +++A + F  + ++ LI+WN +IAG+  +
Sbjct: 127 LQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHA 186

Query: 294 G-SSECLNMFSKMKSERFS--PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD--GN 348
           G  S+ L+ F  M+       P+ FT TS++ AC++   +  G+Q+H  +VR G     +
Sbjct: 187 GYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSS 246

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
             +  +L+D+Y KCG +  ++K F ++ ++ +++W+S+++GY   G   EA+ LF  + +
Sbjct: 247 ATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQE 306

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKE 468
              + D     +++   +   L+ +G +               +   VVD+  + G V E
Sbjct: 307 LNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDE 366

Query: 469 AYELIKSMPFKPDESVWGPLLGACKEHRL 497
           A +    M  K D   W  ++    +H L
Sbjct: 367 AEKCFAEMQLK-DVISWTVVITGYGKHGL 394



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 185/374 (49%), Gaps = 12/374 (3%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +  +L+  Y   G I EA  +F  + +R ++SW  MIAG+      ++A   F  M    
Sbjct: 144 VGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEAN 203

Query: 108 V--NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLE--GSIYVENSLMDVYATCCIS 163
           +   P+ FTL+S+LKAC     +     +HG  ++ G     S  +  SL+D+Y  C   
Sbjct: 204 IKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGY- 262

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           + +AR  F+ +K K  +SW++LI GYA  G     +G+FK +     +++ ++ S  +  
Sbjct: 263 LFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGV 322

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
            A    +  GK + A  +K   G    V+NS++DMY +   + +A + F EM  KD+I+W
Sbjct: 323 FADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISW 382

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
             +I GY K G   + + +F +M      P+   + ++++AC+    +  G+++ + ++ 
Sbjct: 383 TVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLE 442

Query: 343 -RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHGHGKEAI 400
             G+   +     ++D+  + G + +++ +   M  + ++  W +++     HG     I
Sbjct: 443 THGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGD----I 498

Query: 401 ELFDEMVKSGVRPD 414
           EL  E+ K  +R D
Sbjct: 499 ELGKEVGKILLRID 512



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 15/109 (13%)

Query: 40  LIPKGPSILATNLIKS----YFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQ 95
           L  K PS L T+++ S    Y   GL++EA   F EM  +DV+SWTV+I GY       +
Sbjct: 338 LAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKK 397

Query: 96  AWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLE 144
           +  +F EM+R+ + P+     +VL AC            H   IKEG E
Sbjct: 398 SVRIFYEMLRHNIEPDEVCYLAVLSACS-----------HSGMIKEGEE 435


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 195/569 (34%), Positives = 322/569 (56%), Gaps = 8/569 (1%)

Query: 45  PSILAT-NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           P++ A+ +L+ +Y   G + EA  +FDEMPERDV +W  M++G         A T+   M
Sbjct: 100 PNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRM 159

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           V   V  +A TLSSVL  C  +   + A ++H  A+K GL G ++V N+L+DVY    + 
Sbjct: 160 VGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGM- 218

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +  A  VF  M  ++ V+W ++I+     G     + +F  M+  GV  +  +      A
Sbjct: 219 LTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASA 278

Query: 224 CASTGWVSFGKLIHAAVIKHGFG-SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
            A  G     K +H  V + G+   ++   N+++DMY +   +  A + FD + ++D+++
Sbjct: 279 VAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVS 338

Query: 283 WNTIIAGYEKSG-SSECLNMFSKMKS-ERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           WNT+I GY ++G ++E + +++ M + E   P   TF S++ A + L  L  G ++HA  
Sbjct: 339 WNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALS 398

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           ++ GL+ ++ +   LID+YAKCG + ++  +F  M  R    W +++ G G HGHG +A+
Sbjct: 399 IKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKAL 458

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDL 459
            LF +M +  ++PD + F+++L ACSHAGLVD+G  +F  M   Y + P  + Y C+VD+
Sbjct: 459 SLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDM 518

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
           LGRAG++ EA+E I+SMP KPD +VWG LLGAC+ H    +GK+A+  + +L P  +G Y
Sbjct: 519 LGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYY 578

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQY-- 577
           +++SN+YA  GKW+     R ++R    +K  G S +EV+  V  F +  +   H Q+  
Sbjct: 579 VLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEVKGSVSVFYSGTQTEPHPQHEE 638

Query: 578 VYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
           +   L  L+  M    Y PD   ++ D+E
Sbjct: 639 IQRGLHDLLAKMKSAGYVPDYSFVLQDVE 667



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 169/335 (50%), Gaps = 21/335 (6%)

Query: 212 MNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGF-GSNLPVMNSILDMYCRFDCLSDANQ 270
           + P SF+      A+ G  S  +L HA  ++ G    N+    S++  Y RF  +++A +
Sbjct: 65  LRPDSFTFPPLVRAAPGPASAAQL-HACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYR 123

Query: 271 YFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAA 329
            FDEM E+D+  WN +++G    + +++ + +  +M  E  + +  T +S++  C  L  
Sbjct: 124 VFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGD 183

Query: 330 LSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIG 389
            +    +H   V+ GL G L + NALID+Y K G ++++  +F  M+ RDLVTW S++  
Sbjct: 184 RALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISA 243

Query: 390 YGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG--LVDEGLKYFKSMNDYNVN 447
               G    A+ELF  M++SGV PD +  +++ +A +  G  L  + +  +     ++V 
Sbjct: 244 NEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDV- 302

Query: 448 PNKEIYG-CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAAL 506
               I G  +VD+  +  ++  A ++  ++P + D   W  L+    ++ L N     A+
Sbjct: 303 -GDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDR-DVVSWNTLITGYMQNGLAN----EAI 356

Query: 507 RVLD-------LKPNMMGTYIILSNIYAAEGKWEE 534
           R+ +       LKP + GT++ +   Y+  G  ++
Sbjct: 357 RIYNDMHNHEGLKP-IQGTFVSVLPAYSYLGGLQQ 390


>gi|357504423|ref|XP_003622500.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497515|gb|AES78718.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 655

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 188/554 (33%), Positives = 319/554 (57%), Gaps = 11/554 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQA------WTVFV 101
           L   ++  Y      E+A+ LF+E+P R+VVSW +MI      N  N++      ++ F 
Sbjct: 97  LQNQILSVYLKCQEAEDAKKLFEELPVRNVVSWNIMIRASVGRNDENESSGMRLCFSYFR 156

Query: 102 EMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
            M+   + P+  T + ++  C     +     +H   +K G +   +V  +L+ +YA C 
Sbjct: 157 RMLLEMMVPDHITFNGLICLCTQFNDIEMGVQLHCFTVKVGFDLDCFVGCALVGLYAKCG 216

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFS--I 219
             ++NAR VF D+  ++ V W  +++ Y  +        VF  M L+ V  + ++FS  +
Sbjct: 217 F-VENARRVFCDVSCRDLVMWNVMVSCYVFNSLPEEAFRVFNSMRLDVVNGDEFTFSSLL 275

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
           +V +  +  +  FGK +H+ V++  F S++ V +++++MY + + + DA + FDEM+ ++
Sbjct: 276 SVISDDALEYYDFGKQVHSLVLRQSFDSDVLVASALINMYAKSENIIDARRVFDEMSIRN 335

Query: 280 LITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           ++ WNT+I G+   G  +E + +  +M  E F P+  T +SII++C   +A++   QVHA
Sbjct: 336 VVAWNTMIVGFGNHGDGNEVMKLVKEMLREGFLPDELTISSIISSCGYASAITETLQVHA 395

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
             V+      L++AN+LI  Y+KCG+I+ + K F   S  DLVTWTS++  Y  HG  ++
Sbjct: 396 FAVKLSCQDFLSVANSLISAYSKCGSITSAFKCFELTSQPDLVTWTSLIYAYAFHGLAEK 455

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVV 457
           + E+F++M+  G++PDRI F+ VL+AC+H GLV +GL YFK M N Y + P+ E Y C+V
Sbjct: 456 STEMFEKMLSYGIKPDRIAFLGVLSACAHCGLVTKGLHYFKLMTNAYQIVPDSEHYTCLV 515

Query: 458 DLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG 517
           DLLGR G + EA+E+++SMP + D    G  +G+CK H    L KLAA ++  ++P    
Sbjct: 516 DLLGRYGLINEAFEILRSMPIEVDSDTLGAFIGSCKLHSNMELAKLAAEKLFLIEPEKSV 575

Query: 518 TYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQY 577
            Y ++SNI+A++  W +  + RK M      K  G SWIE+ +++  F++NDK   +   
Sbjct: 576 NYAVMSNIFASQKHWYDVERIRKTMEDKRDAKVPGCSWIEIGNQIHSFVSNDKSHPNALE 635

Query: 578 VYGVLEMLIRHMNE 591
           +Y  L ML+R M E
Sbjct: 636 MYVTLNMLLRPMKE 649



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 118/228 (51%), Gaps = 12/228 (5%)

Query: 218 SIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE 277
           S A++  A  G++  GK +HA +IK GF   L + N IL +Y +     DA + F+E+  
Sbjct: 64  SNALKISAKKGYLPEGKQLHAHLIKFGFCQVLSLQNQILSVYLKCQEAEDAKKLFEELPV 123

Query: 278 KDLITWNTIIAGY-------EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAAL 330
           +++++WN +I          E SG   C + F +M  E   P+  TF  +I  C     +
Sbjct: 124 RNVVSWNIMIRASVGRNDENESSGMRLCFSYFRRMLLEMMVPDHITFNGLICLCTQFNDI 183

Query: 331 SCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY 390
             G Q+H   V+ G D +  +  AL+ +YAKCG + +++++F ++S RDLV W  M+  Y
Sbjct: 184 EMGVQLHCFTVKVGFDLDCFVGCALVGLYAKCGFVENARRVFCDVSCRDLVMWNVMVSCY 243

Query: 391 GAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYF 438
             +   +EA  +F+ M    V  D   F ++L+  S     D+ L+Y+
Sbjct: 244 VFNSLPEEAFRVFNSMRLDVVNGDEFTFSSLLSVIS-----DDALEYY 286



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 105/211 (49%), Gaps = 9/211 (4%)

Query: 23  KQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTV 82
           KQ    V + S  SD         ++A+ LI  Y     I +AR +FDEM  R+VV+W  
Sbjct: 290 KQVHSLVLRQSFDSD--------VLVASALINMYAKSENIIDARRVFDEMSIRNVVAWNT 341

Query: 83  MIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG 142
           MI G+ +    N+   +  EM+R    P+  T+SS++ +C    +++    VH  A+K  
Sbjct: 342 MIVGFGNHGDGNEVMKLVKEMLREGFLPDELTISSIISSCGYASAITETLQVHAFAVKLS 401

Query: 143 LEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVF 202
            +  + V NSL+  Y+ C  S+ +A   F      + V+WT+LI  YA  G       +F
Sbjct: 402 CQDFLSVANSLISAYSKCG-SITSAFKCFELTSQPDLVTWTSLIYAYAFHGLAEKSTEMF 460

Query: 203 KEMLLEGVEMNPYSFSIAVRACASTGWVSFG 233
           ++ML  G++ +  +F   + ACA  G V+ G
Sbjct: 461 EKMLSYGIKPDRIAFLGVLSACAHCGLVTKG 491


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 183/559 (32%), Positives = 311/559 (55%), Gaps = 44/559 (7%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+ +Y   G I+  +  FD MP RD VS+   IAG++  +C  ++  +F  M R    P 
Sbjct: 95  LLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPT 154

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
            +T+ S+L A   +  L     +HG  I     G++++ N+L D+YA C   ++ AR +F
Sbjct: 155 EYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCG-EIEQARWLF 213

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           + +  KN VSW  +I+GYA +G     +G+  +M L G                      
Sbjct: 214 DCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSG---------------------- 251

Query: 232 FGKLIHAAVIKHGFGSNLP---VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
                           ++P    M++I+  YC+   + +A + F E  EKD++ W  ++ 
Sbjct: 252 ----------------HMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMV 295

Query: 289 GYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           GY K+G  E  L +F++M  E   P+ +T +S++++CA LA+L  GQ VH   +  GL+ 
Sbjct: 296 GYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNN 355

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           NL +++ALIDMY+KCG I D++ +F+ M  R++V+W +M++G   +GH K+A+ELF+ M+
Sbjct: 356 NLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENML 415

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRV 466
           +   +PD + F+ +L+AC H   +++G +YF S+ N + + P  + Y C+V+LLGR GR+
Sbjct: 416 QQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRI 475

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
           ++A  LIK+M   PD  +W  LL  C         ++AA  + +L P +   YI+LSN+Y
Sbjct: 476 EQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMY 535

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           A+ G+W++ A  R +M+    KK  G SWIE+ ++V  F + D+    ++ +Y  L MLI
Sbjct: 536 ASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLI 595

Query: 587 RHMNETAYEPDIDCLIHDL 605
             + E  + P+ + ++HD+
Sbjct: 596 GKLQEEGFTPNTNLVLHDV 614


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 194/569 (34%), Positives = 315/569 (55%), Gaps = 4/569 (0%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           +G   + T LI  Y   G +  A   F  +  RDVVSWT MIA     +    A  ++  
Sbjct: 137 EGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRR 196

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M  + V PN  TL +V  A      LS    V+G+     +E  + V NS ++++    +
Sbjct: 197 MQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESDVRVMNSAVNMFGNAGL 256

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            + +AR +F DM  ++ V+W  +IT Y  + N    + +F  +  +GV+ N  +F + + 
Sbjct: 257 -LGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLN 315

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
              S   ++ GK+IH  V + G+  +  V  +++ +Y R +    A + F +M  KD+IT
Sbjct: 316 VYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVIT 375

Query: 283 WNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           W  +   Y ++G   E L +F +M+ E   P   T  +++  CA LAAL  G+Q+H+ I+
Sbjct: 376 WTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHII 435

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
                  + +  ALI+MY KCG ++++  +F +M+ RD++ W SM+  Y  HG+  E ++
Sbjct: 436 ENRFRMEMVVETALINMYGKCGKMAEAMSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQ 495

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLL 460
           LF++M   GV+ D + F++VL+A SH+G V +G +YF +M  D+++ P  E+YGCVVDLL
Sbjct: 496 LFNQMQLDGVKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLL 555

Query: 461 GRAGRVKEAYELIKSMP-FKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
           GRAGR++EA +++  +    PD  +W  LLGAC+ H   +  K AA +VL+  P+  G Y
Sbjct: 556 GRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAY 615

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVY 579
           ++LSN+YAA G W+   + RK+MR  G KKE G S IE+ ++V  F+  D+       +Y
Sbjct: 616 VVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIY 675

Query: 580 GVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
             L++L   M    Y PD   ++HD+E E
Sbjct: 676 AELDVLNSEMRAAGYIPDTKMILHDVEDE 704



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 125/451 (27%), Positives = 233/451 (51%), Gaps = 3/451 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           +++  +LI+ Y   G + EA+ +F+ +  +DV +WT MI  Y     +++A  +F +M  
Sbjct: 39  NLVCGHLIQMYAQCGSVPEAQQVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQE 98

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
            +V P   T  ++L AC   +SL +   +HG  +++G EG ++V  +L+++Y  C  S+ 
Sbjct: 99  EDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCG-SVR 157

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A   F  ++ ++ VSWT +I              +++ M L+GV  N  +      A  
Sbjct: 158 GAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYG 217

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
              ++S GK ++  V      S++ VMNS ++M+     L DA + F++M ++D++TWN 
Sbjct: 218 DPNYLSEGKFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNI 277

Query: 286 IIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I  Y +     E + +F +++ +    N  TF  ++    +L +L+ G+ +H  +   G
Sbjct: 278 VITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAG 337

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
            D +  +A AL+ +Y +C     + KIF +M  +D++TWT M + Y  +G  KEA++LF 
Sbjct: 338 YDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQ 397

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
           EM   G RP     +AVL  C+H   + +G +    + +        +   ++++ G+ G
Sbjct: 398 EMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVETALINMYGKCG 457

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           ++ EA  + + M  K D  VW  +LGA  +H
Sbjct: 458 KMAEAMSVFEKMA-KRDILVWNSMLGAYAQH 487



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 183/372 (49%), Gaps = 4/372 (1%)

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P+     ++L+ C   K++ +   VH      G E +  V   L+ +YA C  S+  A+ 
Sbjct: 2   PDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCG-SVPEAQQ 60

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           VF  ++ K+  +WT +I  Y   G+    LG+F +M  E V     ++   + ACAST  
Sbjct: 61  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 120

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           +  G  IH  +++ GF  ++ V  ++++MY +   +  A   F  +  +D+++W  +IA 
Sbjct: 121 LKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAA 180

Query: 290 YEKSGSSECLN-MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG-LDG 347
             +         ++ +M+ +   PN  T  ++  A      LS G+ V+ G+V  G ++ 
Sbjct: 181 CVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVY-GLVSSGVMES 239

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           ++ + N+ ++M+   G + D++++F +M DRD+VTW  ++  Y  + +  EA+ LF  + 
Sbjct: 240 DVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQ 299

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
           + GV+ + I F+ +L   +    + +G    + + +   + +  +   ++ L GR     
Sbjct: 300 QDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPG 359

Query: 468 EAYELIKSMPFK 479
           +A+++   M  K
Sbjct: 360 QAWKIFVDMGSK 371



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 152/317 (47%), Gaps = 9/317 (2%)

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
           F   ++ C+S   V  G+ +H  V   GF  N  V   ++ MY +   + +A Q F+ + 
Sbjct: 7   FVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEILE 66

Query: 277 EKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ 335
            KD+  W  +I  Y + G     L MF +M+ E   P   T+ +I+ ACA+  +L  G +
Sbjct: 67  RKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGME 126

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
           +H  I+++G +G++ +  ALI+MY KCG++  +   F  +  RD+V+WT+M+     H  
Sbjct: 127 IHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQ 186

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455
              A  L+  M   GV P++I    V  A      + EG   +  ++   +  +  +   
Sbjct: 187 FALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESDVRVMNS 246

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGK----LAALRVLDL 511
            V++ G AG + +A  L + M    D   W  ++    ++   N G+       L+   +
Sbjct: 247 AVNMFGNAGLLGDARRLFEDM-VDRDVVTWNIVITLYVQNE--NFGEAVRLFGRLQQDGV 303

Query: 512 KPNMMGTYIILSNIYAA 528
           K N + T++++ N+Y +
Sbjct: 304 KANDI-TFVLMLNVYTS 319



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 115/227 (50%), Gaps = 7/227 (3%)

Query: 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKI 371
           P+   F +++  C++   +  G++VH  +  RG + N  +   LI MYA+CG++ ++Q++
Sbjct: 2   PDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQV 61

Query: 372 FSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLV 431
           F  +  +D+  WT M+  Y   G    A+ +F +M +  V P ++ ++A+L AC+    +
Sbjct: 62  FEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESL 121

Query: 432 DEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
            +G++    +       +  +   ++++  + G V+ A++  K +  + D   W  ++ A
Sbjct: 122 KDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHR-DVVSWTAMIAA 180

Query: 492 CKEHRLPNLGKLAALRV-LD-LKPNMMGTYIILSNI----YAAEGKW 532
           C +H    L +    R+ LD + PN +  Y + +      Y +EGK+
Sbjct: 181 CVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKF 227



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)

Query: 412 RPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471
           +PD   F+A+L  CS A  VD G +    + D     N  + G ++ +  + G V EA +
Sbjct: 1   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 60

Query: 472 LIKSMPFKPDESVWGPLLGA-CKEHRLPN-LGKLAALRVLDLKPNMMGTYIILSNIYAA 528
           + + +  K D   W  ++G  C++      LG    ++  D+ P  + TY+ + N  A+
Sbjct: 61  VFEILERK-DVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKV-TYVAILNACAS 117


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 194/566 (34%), Positives = 325/566 (57%), Gaps = 5/566 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           +I    L+  Y   G ++ A  +F E+ ++D +SW  M++ Y     + +A   F EMV+
Sbjct: 299 NIQCNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQ 358

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           N  NP+   + S+L A   +  L N   VH  A+K+ L+  + + N+LMD+Y  C  S++
Sbjct: 359 NGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKC-YSVE 417

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            +  VF+ M+ K+ VSWTT+I  YA S      +G F+    EG++++P      + AC+
Sbjct: 418 CSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACS 477

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               +S  K +H+  I++G   +L + N I+D+Y     +  A   F+ + +KD++TW +
Sbjct: 478 GLKSISLLKQVHSYAIRNGL-LDLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTS 536

Query: 286 IIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           ++  + ++G   E + +F KM +    P+      I+ A A L++L+ G+++H  ++R  
Sbjct: 537 MVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGK 596

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
                A+ ++L+DMY+ CG+++ + K+F E   +D+V WT+M+   G HGHGK+AI +F 
Sbjct: 597 FPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFK 656

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRA 463
            M+++GV PD + F+A+L ACSH+ LVDEG  Y   M + Y + P +E Y CVVDLLGR+
Sbjct: 657 RMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRS 716

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G+ +EAY+ IKSMP +P   VW  LLGAC+ H+   L  +A  ++L+L+P+  G Y+++S
Sbjct: 717 GQTEEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPDNPGNYVLVS 776

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL- 582
           N++A  GKW    + R  M   G +K+   SWIE+ + V  F A D     +Q ++  L 
Sbjct: 777 NVFAEMGKWNNVKEIRTKMTEQGLRKDPACSWIEIGNTVHTFTARDHSHRDSQAIHLKLA 836

Query: 583 EMLIRHMNETAYEPDIDCLIHDLEGE 608
           E+  +   E  Y  D   ++HD+  E
Sbjct: 837 EITEKLRREGQYVEDTSFVLHDVSEE 862



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 146/460 (31%), Positives = 240/460 (52%), Gaps = 16/460 (3%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            LAT L+  Y   G + +A  LFD MP R V SW  +I    S     +A  V+  M  +
Sbjct: 94  FLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRAS 153

Query: 107 E----VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           E      P+  TL+SVLKAC         + VHG+A+K GL+ S  V N+L+ +YA C +
Sbjct: 154 EPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGL 213

Query: 163 SMDNARLVFNDMKWKNDV-SWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
            +D+A  VF  M+   DV SW + I+G   +G     L +F+ M  +G  MN Y+    +
Sbjct: 214 -LDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVL 272

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
           + CA    ++ G+ +HAA++K G   N+   N++L MY R   +  A + F E+ +KD I
Sbjct: 273 QVCAELAQLNHGRELHAALLKCGTEFNIQC-NALLVMYARCGWVDSALRVFREIGDKDYI 331

Query: 282 TWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           +WN++++ Y +    +E ++ F +M    F+P+     S+++A   L  L  G++VHA  
Sbjct: 332 SWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYA 391

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           V++ LD +L +AN L+DMY KC ++  S ++F  M  +D V+WT+++  Y       EAI
Sbjct: 392 VKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAI 451

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP---NKEIYGCVV 457
             F    K G++ D ++  ++L ACS  GL  + +   K ++ Y +     +  +   ++
Sbjct: 452 GKFRTAQKEGIKVDPMMMGSILEACS--GL--KSISLLKQVHSYAIRNGLLDLILKNRII 507

Query: 458 DLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
           D+ G  G V  A  + + M  K D   W  ++    E+ L
Sbjct: 508 DIYGECGEVCYALNIFE-MLDKKDIVTWTSMVNCFAENGL 546



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 134/281 (47%), Gaps = 19/281 (6%)

Query: 230 VSFGKLIHAAVIKHG-FGSNLP--VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
           VS G+ +HA  +  G  G +    +   +L MY +   L DA++ FD M  + + +WN +
Sbjct: 71  VSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNAL 130

Query: 287 I-AGYEKSGSSECLNMFSKMKSER----FSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           I A     G+ E + ++  M++       +P+  T  S++ AC       CG +VH   V
Sbjct: 131 IGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAV 190

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD-RDLVTWTSMMIGYGAHGHGKEAI 400
           + GLD +  +ANAL+ MYAKCG +  + ++F  M D RD+ +W S + G   +G   EA+
Sbjct: 191 KSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEAL 250

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK----YFKSMNDYNVNPNKEIYGCV 456
           +LF  M   G   +    + VL  C+    ++ G +      K   ++N+  N      +
Sbjct: 251 DLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQCNA-----L 305

Query: 457 VDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
           + +  R G V  A  + + +  K D   W  +L    ++RL
Sbjct: 306 LVMYARCGWVDSALRVFREIGDK-DYISWNSMLSCYVQNRL 345


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 187/493 (37%), Positives = 295/493 (59%), Gaps = 8/493 (1%)

Query: 124 GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS---MDNARLVFNDM-KWKND 179
           G+ S++    +H  +I+ G+  S       +  Y     S   M  A  VF+ + K  N 
Sbjct: 26  GVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINV 85

Query: 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEG-VEMNPYSFSIAVRACASTGWVSFGKLIHA 238
             W TLI GYA  GN      +++EM + G VE + +++   ++A  +   V  G+ IH+
Sbjct: 86  FIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHS 145

Query: 239 AVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SE 297
            VI+ GFGS + V NS+L +Y     ++ A + FD+M EKDL+ WN++I G+ ++G   E
Sbjct: 146 VVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEE 205

Query: 298 CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALID 357
            L ++++M S+   P+ FT  S+++ACA + AL+ G++VH  +++ GL  NL  +N L+D
Sbjct: 206 ALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLD 265

Query: 358 MYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS-GVRPDRI 416
           +YA+CG + +++ +F EM D++ V+WTS+++G   +G GKEAIELF  M  + G+ P  I
Sbjct: 266 LYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEI 325

Query: 417 VFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKS 475
            F+ +L ACSH G+V EG +YF+ M + Y + P  E +GC+VDLL RAG+VK+AYE IKS
Sbjct: 326 TFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKS 385

Query: 476 MPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEF 535
           MP +P+  +W  LLGAC  H   +L + A +++L L+PN  G Y++LSN+YA+E +W + 
Sbjct: 386 MPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDV 445

Query: 536 AKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYE 595
            K RK M   G KK  G S +EV ++V  F+  DK    +  +Y  L+ +   +    Y 
Sbjct: 446 QKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYV 505

Query: 596 PDIDCLIHDLEGE 608
           P I  +  D+E E
Sbjct: 506 PQISNVYVDVEEE 518



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 163/335 (48%), Gaps = 28/335 (8%)

Query: 76  DVVSWTVMIAGYTSFNCHNQAWTVFVEM-VRNEVNPNAFTLSSVLKACKGMKSLSNAALV 134
           +V  W  +I GY        A++++ EM V   V P+  T   ++KA   M  +     +
Sbjct: 84  NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETI 143

Query: 135 HGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGN 194
           H + I+ G    IYV+NSL+ +YA C   + +A  VF+ M  K+ V+W ++I G+A +G 
Sbjct: 144 HSVVIRSGFGSLIYVQNSLLHLYANCG-DVASAYKVFDKMPEKDLVAWNSVINGFAENGK 202

Query: 195 GYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNS 254
               L ++ EM  +G++ + ++    + ACA  G ++ GK +H  +IK G   NL   N 
Sbjct: 203 PEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNV 262

Query: 255 ILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKS-ERFSP 312
           +LD+Y R   + +A   FDEM +K+ ++W ++I G   +G   E + +F  M+S E   P
Sbjct: 263 LLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLP 322

Query: 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRG------------LDGNLALANALIDMYA 360
              TF  I+ AC+           H G+V+ G            ++  +     ++D+ A
Sbjct: 323 CEITFVGILYACS-----------HCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLA 371

Query: 361 KCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHG 394
           + G +  + +    M    ++V W +++     HG
Sbjct: 372 RAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHG 406



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 138/269 (51%), Gaps = 5/269 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +  +L+  Y + G +  A  +FD+MPE+D+V+W  +I G+       +A  ++ EM    
Sbjct: 158 VQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKG 217

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + P+ FT+ S+L AC  + +L+    VH   IK GL  +++  N L+D+YA C   ++ A
Sbjct: 218 IKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCG-RVEEA 276

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEM-LLEGVEMNPYSFSIAVRACAS 226
           + +F++M  KN VSWT+LI G A +G G   + +FK M   EG+     +F   + AC+ 
Sbjct: 277 KTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSH 336

Query: 227 TGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLITWN 284
            G V  G +       ++     +     ++D+  R   +  A +Y   M  + +++ W 
Sbjct: 337 CGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWR 396

Query: 285 TIIAGYEKSGSSECLNMFSKMKSERFSPN 313
           T++      G S+ L  F++++  +  PN
Sbjct: 397 TLLGACTVHGDSD-LAEFARIQILQLEPN 424


>gi|255572826|ref|XP_002527345.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533264|gb|EEF35017.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 687

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 184/560 (32%), Positives = 317/560 (56%), Gaps = 16/560 (2%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T+L+  Y   G +  AR +FD +  R+VV+WT ++ GY   +  N A  VF +M+ +   
Sbjct: 113 TSLVNVYAKCGAMGNARKIFDSLHRRNVVAWTALMTGYVQNSQPNIAIDVFQDMLESGTL 172

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P+ +TL   L AC  + S+     +H   IK  L+    + N+L  +Y+    S+D++  
Sbjct: 173 PSNYTLGIALNACSAINSIKLGKQLHAFVIKYKLDYDPSIGNALCSLYSKLG-SLDSSIN 231

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           VF  +  KN +SWT +I+    +G    GL  F EMLLE ++ N ++ +  +  C  T  
Sbjct: 232 VFQSIGEKNVISWTAVISACGENGKAAMGLRFFNEMLLEDIKPNEFTLTTVLSLCCVTLA 291

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           +  G+L+H+  IK G+  NL + NSI+ +Y +   + +A   F +M   +L+TWN +I+G
Sbjct: 292 LVLGRLVHSLSIKLGYQYNLRITNSIMYLYLKCGHMDEAQILFHKMGSTNLVTWNAMISG 351

Query: 290 Y-------------EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQV 336
           +             ++SG  E L++F ++      P+ FT +S++  C+ L+AL  G+Q+
Sbjct: 352 HAQAMDLAKDDFSAQRSGI-EALSIFLELNRTGKKPDLFTLSSVLTVCSRLSALGQGEQL 410

Query: 337 HAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHG 396
           HA  ++ G   ++ +  AL++MY+KCG+I  + K F EMS R L++WT+M+ G   HGH 
Sbjct: 411 HAQTIKSGYLSDVVVGTALVNMYSKCGSIGKASKAFVEMSTRTLISWTTMITGLAQHGHS 470

Query: 397 KEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGC 455
           ++A++LF++M  +GVRP++I F+ VL AC H+G+VDE L YF+ M  +Y + P  + YGC
Sbjct: 471 EQALQLFEDMRLAGVRPNQITFVGVLAACCHSGMVDEALGYFEMMQKEYRIKPVMDHYGC 530

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM 515
           ++ +  +  R+ EA+++I  M F+P E +W  L+  C+      LG  AA ++L LK   
Sbjct: 531 LIAMFVKLRRLDEAFDIINKMDFEPSEFIWSILIAGCRNLGKQELGFYAAEQLLKLKLKD 590

Query: 516 MGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHT 575
             TY+ L N+Y +  +W++ ++ RK+M+     K    SWI +++K+  F    ++  H 
Sbjct: 591 TETYVTLLNMYISAKRWQDVSRVRKLMKEEKLGKFNDWSWITIKEKIHSFKTTGRLHPHN 650

Query: 576 QYVYGVLEMLIRHMNETAYE 595
             +Y +LE L+     + Y+
Sbjct: 651 AKMYELLEELLDKAKGSGYQ 670



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 114/413 (27%), Positives = 210/413 (50%), Gaps = 16/413 (3%)

Query: 118 VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK 177
           +L+ C    S+S A ++H   IK G    + V  SL++VYA C  +M NAR +F+ +  +
Sbjct: 80  LLQECTKKNSVSEAQVIHAHIIKTGTHKDLAVMTSLVNVYAKCG-AMGNARKIFDSLHRR 138

Query: 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIH 237
           N V+WT L+TGY  +      + VF++ML  G   + Y+  IA+ AC++   +  GK +H
Sbjct: 139 NVVAWTALMTGYVQNSQPNIAIDVFQDMLESGTLPSNYTLGIALNACSAINSIKLGKQLH 198

Query: 238 AAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE 297
           A VIK+    +  + N++  +Y +   L  +   F  + EK++I+W  +I+   ++G + 
Sbjct: 199 AFVIKYKLDYDPSIGNALCSLYSKLGSLDSSINVFQSIGEKNVISWTAVISACGENGKAA 258

Query: 298 C-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALI 356
             L  F++M  E   PN FT T++++ C    AL  G+ VH+  ++ G   NL + N+++
Sbjct: 259 MGLRFFNEMLLEDIKPNEFTLTTVLSLCCVTLALVLGRLVHSLSIKLGYQYNLRITNSIM 318

Query: 357 DMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIG-----------YGAHGHGKEAIELFDE 405
            +Y KCG++ ++Q +F +M   +LVTW +M+ G           + A   G EA+ +F E
Sbjct: 319 YLYLKCGHMDEAQILFHKMGSTNLVTWNAMISGHAQAMDLAKDDFSAQRSGIEALSIFLE 378

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           + ++G +PD     +VLT CS    + +G +            +  +   +V++  + G 
Sbjct: 379 LNRTGKKPDLFTLSSVLTVCSRLSALGQGEQLHAQTIKSGYLSDVVVGTALVNMYSKCGS 438

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKE--HRLPNLGKLAALRVLDLKPNMM 516
           + +A +    M  +   S W  ++    +  H    L     +R+  ++PN +
Sbjct: 439 IGKASKAFVEMSTRTLIS-WTTMITGLAQHGHSEQALQLFEDMRLAGVRPNQI 490



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 121/219 (55%), Gaps = 1/219 (0%)

Query: 208 EGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSD 267
           E  ++ P  +   ++ C     VS  ++IHA +IK G   +L VM S++++Y +   + +
Sbjct: 68  EEKKIEPSYYLPLLQECTKKNSVSEAQVIHAHIIKTGTHKDLAVMTSLVNVYAKCGAMGN 127

Query: 268 ANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACAT 326
           A + FD +  ++++ W  ++ GY + S  +  +++F  M      P+ +T    + AC+ 
Sbjct: 128 ARKIFDSLHRRNVVAWTALMTGYVQNSQPNIAIDVFQDMLESGTLPSNYTLGIALNACSA 187

Query: 327 LAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSM 386
           + ++  G+Q+HA +++  LD + ++ NAL  +Y+K G++  S  +F  + ++++++WT++
Sbjct: 188 INSIKLGKQLHAFVIKYKLDYDPSIGNALCSLYSKLGSLDSSINVFQSIGEKNVISWTAV 247

Query: 387 MIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTAC 425
           +   G +G     +  F+EM+   ++P+      VL+ C
Sbjct: 248 ISACGENGKAAMGLRFFNEMLLEDIKPNEFTLTTVLSLC 286



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 105/209 (50%), Gaps = 3/209 (1%)

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           +  ++  C    ++S  Q +HA I++ G   +LA+  +L+++YAKCG + +++KIF  + 
Sbjct: 77  YLPLLQECTKKNSVSEAQVIHAHIIKTGTHKDLAVMTSLVNVYAKCGAMGNARKIFDSLH 136

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
            R++V WT++M GY  +     AI++F +M++SG  P        L ACS    +  G +
Sbjct: 137 RRNVVAWTALMTGYVQNSQPNIAIDVFQDMLESGTLPSNYTLGIALNACSAINSIKLGKQ 196

Query: 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR 496
               +  Y ++ +  I   +  L  + G +  +  + +S+  K   S W  ++ AC E+ 
Sbjct: 197 LHAFVIKYKLDYDPSIGNALCSLYSKLGSLDSSINVFQSIGEKNVIS-WTAVISACGENG 255

Query: 497 LPNLGK--LAALRVLDLKPNMMGTYIILS 523
              +G      + + D+KPN      +LS
Sbjct: 256 KAAMGLRFFNEMLLEDIKPNEFTLTTVLS 284



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 71/168 (42%), Gaps = 15/168 (8%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++ T L+  Y   G I +A   F EM  R ++SWT MI G        QA  +F +M   
Sbjct: 424 VVGTALVNMYSKCGSIGKASKAFVEMSTRTLISWTTMITGLAQHGHSEQALQLFEDMRLA 483

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM-- 164
            V PN  T   VL AC     +  A     M  KE      Y    +MD Y  C I+M  
Sbjct: 484 GVRPNQITFVGVLAACCHSGMVDEALGYFEMMQKE------YRIKPVMDHYG-CLIAMFV 536

Query: 165 -----DNARLVFNDMKWK-NDVSWTTLITGYAHSGNGYGGLGVFKEML 206
                D A  + N M ++ ++  W+ LI G  + G    G    +++L
Sbjct: 537 KLRRLDEAFDIINKMDFEPSEFIWSILIAGCRNLGKQELGFYAAEQLL 584


>gi|357166812|ref|XP_003580863.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Brachypodium distachyon]
          Length = 707

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 200/572 (34%), Positives = 318/572 (55%), Gaps = 31/572 (5%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           ++L  NLI  Y   G +  A  +F  MPER+VVSWT ++ G+       +   +   M  
Sbjct: 39  TMLGNNLIDMYAKCGELRMAGEVFGGMPERNVVSWTALMVGFLRHGDARECLRLLGAMRS 98

Query: 106 -NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
            ++V PN FTLS+ LKAC  +  ++    +HG  ++ G EG   V NSL+ +Y+     +
Sbjct: 99  LSDVAPNEFTLSASLKACGVVGDMAAGVWIHGACVRAGFEGHHVVANSLVLLYSKGG-RI 157

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLL-----EGVEMNPYSFSI 219
            +AR VF+   ++N V+W  +I+GYAH+G+G   L VF+EM       E  + + ++F+ 
Sbjct: 158 GDARRVFDGTVFRNLVTWNAMISGYAHAGHGRDSLLVFREMQQRRQEEEDHQPDEFTFAS 217

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGF--GSNLPVMNSILDMYCRFDCLSD-ANQYFDEMT 276
            ++AC S G    G  +HAA++  G    SN  +  ++LDMY +  CL   A Q F+ + 
Sbjct: 218 LLKACGSLGAAREGAQVHAAMVIRGVSTASNAILAGALLDMYVKCRCLLPMAMQVFNRLE 277

Query: 277 EKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ 335
           +K+ I W T+I G+ + G   E + +F +  S     +    +S++   A  A +  G+Q
Sbjct: 278 QKNAIQWTTVIVGHAQEGQVKEAMELFGRFWSSGVRADGHVLSSVVGVFADFALVEQGRQ 337

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
           VH   V+     ++++AN+LIDMY KCG   ++ + F E+  R++V+WT+M+ G G HGH
Sbjct: 338 VHCYTVKTPAGLDVSVANSLIDMYHKCGLTDEAARRFREVPARNVVSWTAMINGLGKHGH 397

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYG 454
           G+EAI +F+EM   GV PD + ++A+L+ACSH+GLV+E  +YF ++ +D  + P  E Y 
Sbjct: 398 GQEAIHMFEEMRAEGVEPDEVAYLALLSACSHSGLVEECRRYFSAIRHDRRLRPRAEHYA 457

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514
           C+VDLLGRAG + EA +L+ +MP  P   VW  LL AC+ H+   +G+ A   +L +  +
Sbjct: 458 CMVDLLGRAGELSEAKDLVATMPMAPTVGVWQTLLSACRVHKNVTVGREAGETLLAIDGD 517

Query: 515 MMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSH 574
               Y++LSNI+A  G W E  + R  MR  G +K+ G SW+EV             G  
Sbjct: 518 NPVNYVMLSNIFAEAGDWRECQRVRGAMRRRGLRKQGGCSWVEV-------------GKE 564

Query: 575 TQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
             + YG  +      +      DI C++ D+E
Sbjct: 565 AHFFYGGGD------DSHPRAADICCVLRDVE 590



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 125/422 (29%), Positives = 212/422 (50%), Gaps = 45/422 (10%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM 174
           ++ +L+A     ++   A +HG  +K G      + N+L+D+YA C   +  A  VF  M
Sbjct: 7   IADMLRASAASSAIHGGAQLHGALLKLGFGSDTMLGNNLIDMYAKCG-ELRMAGEVFGGM 65

Query: 175 KWKNDVSWTTLITGYAHSGNGYGGLGVFKEML-LEGVEMNPYSFSIAVRACASTGWVSFG 233
             +N VSWT L+ G+   G+    L +   M  L  V  N ++ S +++AC   G ++ G
Sbjct: 66  PERNVVSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMAAG 125

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
             IH A ++ GF  +  V NS++ +Y +   + DA + FD    ++L+TWN +I+GY  +
Sbjct: 126 VWIHGACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYAHA 185

Query: 294 G-SSECLNMFSKMKSER-----FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD- 346
           G   + L +F +M+  R       P+ FTF S++ AC +L A   G QVHA +V RG+  
Sbjct: 186 GHGRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAREGAQVHAAMVIRGVST 245

Query: 347 -GNLALANALIDMYAKCGNISD-SQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
             N  LA AL+DMY KC  +   + ++F+ +  ++ + WT++++G+   G  KEA+ELF 
Sbjct: 246 ASNAILAGALLDMYVKCRCLLPMAMQVFNRLEQKNAIQWTTVIVGHAQEGQVKEAMELFG 305

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK-----------------------YFK-S 440
               SGVR D  V  +V+   +   LV++G +                       Y K  
Sbjct: 306 RFWSSGVRADGHVLSSVVGVFADFALVEQGRQVHCYTVKTPAGLDVSVANSLIDMYHKCG 365

Query: 441 MNDYNVNPNKEI-------YGCVVDLLGRAGRVKEA---YELIKSMPFKPDESVWGPLLG 490
           + D      +E+       +  +++ LG+ G  +EA   +E +++   +PDE  +  LL 
Sbjct: 366 LTDEAARRFREVPARNVVSWTAMINGLGKHGHGQEAIHMFEEMRAEGVEPDEVAYLALLS 425

Query: 491 AC 492
           AC
Sbjct: 426 AC 427



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 180/372 (48%), Gaps = 13/372 (3%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           +G  ++A +L+  Y   G I +AR +FD    R++V+W  MI+GY        +  VF E
Sbjct: 138 EGHHVVANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYAHAGHGRDSLLVFRE 197

Query: 103 MVRN-----EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLE--GSIYVENSLMD 155
           M +      +  P+ FT +S+LKAC  + +    A VH   +  G+    +  +  +L+D
Sbjct: 198 MQQRRQEEEDHQPDEFTFASLLKACGSLGAAREGAQVHAAMVIRGVSTASNAILAGALLD 257

Query: 156 VYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPY 215
           +Y  C   +  A  VFN ++ KN + WTT+I G+A  G     + +F      GV  + +
Sbjct: 258 MYVKCRCLLPMAMQVFNRLEQKNAIQWTTVIVGHAQEGQVKEAMELFGRFWSSGVRADGH 317

Query: 216 SFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM 275
             S  V   A    V  G+ +H   +K   G ++ V NS++DMY +     +A + F E+
Sbjct: 318 VLSSVVGVFADFALVEQGRQVHCYTVKTPAGLDVSVANSLIDMYHKCGLTDEAARRFREV 377

Query: 276 TEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAAL-SCG 333
             +++++W  +I G  K G   E ++MF +M++E   P+   + ++++AC+    +  C 
Sbjct: 378 PARNVVSWTAMINGLGKHGHGQEAIHMFEEMRAEGVEPDEVAYLALLSACSHSGLVEECR 437

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLV-TWTSMMIGYGA 392
           +   A    R L         ++D+  + G +S+++ + + M     V  W +++     
Sbjct: 438 RYFSAIRHDRRLRPRAEHYACMVDLLGRAGELSEAKDLVATMPMAPTVGVWQTLLSACRV 497

Query: 393 HGH---GKEAIE 401
           H +   G+EA E
Sbjct: 498 HKNVTVGREAGE 509


>gi|297844454|ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335950|gb|EFH66367.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 866

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 201/543 (37%), Positives = 309/543 (56%), Gaps = 4/543 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y   G ++ AR LFD MP RD++SW  MI+GY      ++   +F  M    V+P+
Sbjct: 237 LITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPD 296

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
             TL+SV+ AC+ +        +H   I  G    I V NSL  +Y     S   A  +F
Sbjct: 297 LMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLYAG-SWREAEKLF 355

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           + M  K+ VSWTT+I+GY ++      +  ++ M  + V+ +  + +  + ACA+ G + 
Sbjct: 356 SRMDCKDIVSWTTMISGYEYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLD 415

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            G  +H   IK    S + V N++++MY +  C+  A   F  +  K++I+W +IIAG  
Sbjct: 416 TGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLR 475

Query: 292 KSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
            +    E L  F +MK     PN  T T+ +AACA + AL CG+++HA ++R G+  +  
Sbjct: 476 LNNRCFEALIFFRQMKMT-LQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDF 534

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           L NAL+DMY +CG ++ +   F+    +D+ +W  ++ GY   G G   +ELFD MVK+ 
Sbjct: 535 LPNALLDMYVRCGRMNIAWNQFNSQK-KDVSSWNILLTGYSERGQGSVVVELFDRMVKAR 593

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470
           VRPD I F+++L  C  + +V +GL YF  M +Y V PN + Y CVVDLLGRAG ++EA+
Sbjct: 594 VRPDEITFISLLCGCGKSQMVRQGLMYFSKMEEYGVTPNLKHYACVVDLLGRAGELQEAH 653

Query: 471 ELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEG 530
           + I+ MP  PD +VWG LL AC+ H   +LG+L+A R+ +L    +G YI+L N+YA  G
Sbjct: 654 KFIQKMPVTPDPAVWGALLNACRIHHNIDLGELSAQRIFELDKGSVGYYILLCNLYADCG 713

Query: 531 KWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMN 590
           KW E AK R++M+  G   + G SW+EV+ KV  F+++DK    T+ +  VL+     M+
Sbjct: 714 KWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLDGFYEKMS 773

Query: 591 ETA 593
           E  
Sbjct: 774 EVG 776



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 131/449 (29%), Positives = 228/449 (50%), Gaps = 6/449 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV-RN 106
           L    +  +   G + +A  +F +M ER++ SW V++ GY      ++A  ++  M+   
Sbjct: 131 LGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVG 190

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V P+ +T   VL+ C G+  L+    VH   ++ G E  I V N+L+ +Y  C   + +
Sbjct: 191 GVKPDVYTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCG-DVKS 249

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           ARL+F+ M  ++ +SW  +I+GY  +G G+ GL +F  M    V+ +  + +  + AC  
Sbjct: 250 ARLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACEL 309

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G    G+ IHA VI  GF  ++ V NS+  MY       +A + F  M  KD+++W T+
Sbjct: 310 LGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTM 369

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+GYE +   E  ++ +  M  +   P+  T  ++++ACATL  L  G ++H   ++  L
Sbjct: 370 ISGYEYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARL 429

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
              + +AN LI+MY+KC  I  +  IF  +  +++++WTS++ G   +    EA+  F +
Sbjct: 430 ISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFFRQ 489

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M K  ++P+ I   A L AC+  G +  G +    +    V  +  +   ++D+  R GR
Sbjct: 490 M-KMTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGR 548

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKE 494
           +  A+    S   K D S W  LL    E
Sbjct: 549 MNIAWNQFNSQ--KKDVSSWNILLTGYSE 575



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 189/341 (55%), Gaps = 5/341 (1%)

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
           ++ +R  V+ + F   ++++ C+  ++    + V+ +A+      S+ + N+ + ++   
Sbjct: 85  MQELRVAVDEDVFV--ALVRLCEWKRAHEEGSKVYSVALSSMNSLSVELGNAFLAMFVRF 142

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEML-LEGVEMNPYSFSI 219
              +D A  VF  M  +N  SW  L+ GYA  G     + ++  ML + GV+ + Y+F  
Sbjct: 143 GNLVD-AWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVGGVKPDVYTFPC 201

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
            +R C     ++ G+ +H  V+++G+  ++ V+N+++ MY +   +  A   FD M  +D
Sbjct: 202 VLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRD 261

Query: 280 LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           +I+WN +I+GY ++G   E L +F  M+     P+  T TS+I+AC  L     G+ +HA
Sbjct: 262 IISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHA 321

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
            ++  G   ++++ N+L  MY   G+  +++K+FS M  +D+V+WT+M+ GY  +   ++
Sbjct: 322 YVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTMISGYEYNFLPEK 381

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439
           AI+ +  M +  V+PD I   AVL+AC+  G +D G++  K
Sbjct: 382 AIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHK 422



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 177/343 (51%), Gaps = 7/343 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +  +L + Y   G   EA  LF  M  +D+VSWT MI+GY       +A   +  M ++ 
Sbjct: 334 VCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTMISGYEYNFLPEKAIDTYRMMDQDS 393

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDN 166
           V P+  T+++VL AC  +  L     +H +AIK  L   + V N+L+++Y+ C CI  D 
Sbjct: 394 VKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCI--DK 451

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  +F+++  KN +SWT++I G   +   +  L  F++M +  ++ N  + + A+ ACA 
Sbjct: 452 ALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFFRQMKMT-LQPNAITLTAALAACAR 510

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G +  GK IHA V++ G G +  + N++LDMY R   ++ A   F+   +KD+ +WN +
Sbjct: 511 IGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNIAWNQFNS-QKKDVSSWNIL 569

Query: 287 IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           + GY + G  S  + +F +M   R  P+  TF S++  C     +  G    + +   G+
Sbjct: 570 LTGYSERGQGSVVVELFDRMVKARVRPDEITFISLLCGCGKSQMVRQGLMYFSKMEEYGV 629

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMM 387
             NL     ++D+  + G + ++ K   +M    D   W +++
Sbjct: 630 TPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALL 672



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 152/312 (48%), Gaps = 7/312 (2%)

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
           F   VR C        G  +++  +      ++ + N+ L M+ RF  L DA   F +M+
Sbjct: 97  FVALVRLCEWKRAHEEGSKVYSVALSSMNSLSVELGNAFLAMFVRFGNLVDAWYVFGKMS 156

Query: 277 EKDLITWNTIIAGYEKSGS-SECLNMFSKMK-SERFSPNCFTFTSIIAACATLAALSCGQ 334
           E++L +WN ++ GY K G   E + ++ +M       P+ +TF  ++  C  +  L+ G+
Sbjct: 157 ERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGR 216

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
           +VH  +VR G + ++ + NALI MY KCG++  ++ +F  M  RD+++W +M+ GY  +G
Sbjct: 217 EVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENG 276

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG 454
            G E ++LF  M    V PD +   +V++AC   G    G      +       +  +  
Sbjct: 277 MGHEGLKLFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCN 336

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD---L 511
            +  +   AG  +EA +L   M  K D   W  ++   + + LP    +   R++D   +
Sbjct: 337 SLTQMYLYAGSWREAEKLFSRMDCK-DIVSWTTMISGYEYNFLPE-KAIDTYRMMDQDSV 394

Query: 512 KPNMMGTYIILS 523
           KP+ +    +LS
Sbjct: 395 KPDEITVAAVLS 406



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 120/242 (49%), Gaps = 4/242 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I+A NLI  Y     I++A  +F  +P ++V+SWT +IAG    N   +A   F +M + 
Sbjct: 434 IVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFFRQM-KM 492

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + PNA TL++ L AC  + +L     +H   ++ G+    ++ N+L+D+Y  C   M+ 
Sbjct: 493 TLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCG-RMNI 551

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A   FN  K K+  SW  L+TGY+  G G   + +F  M+   V  +  +F   +  C  
Sbjct: 552 AWNQFNSQK-KDVSSWNILLTGYSERGQGSVVVELFDRMVKARVRPDEITFISLLCGCGK 610

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLITWNT 285
           +  V  G +  + + ++G   NL     ++D+  R   L +A+++  +M    D   W  
Sbjct: 611 SQMVRQGLMYFSKMEEYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGA 670

Query: 286 II 287
           ++
Sbjct: 671 LL 672



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 109/230 (47%), Gaps = 4/230 (1%)

Query: 297 ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALI 356
           E + + + M+  R + +   F +++  C    A   G +V++  +      ++ L NA +
Sbjct: 77  EAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAHEEGSKVYSVALSSMNSLSVELGNAFL 136

Query: 357 DMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV-KSGVRPDR 415
            M+ + GN+ D+  +F +MS+R+L +W  ++ GY   G+  EAI L+  M+   GV+PD 
Sbjct: 137 AMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVGGVKPDV 196

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKS 475
             F  VL  C     +  G +    +  Y    + ++   ++ +  + G VK A  L   
Sbjct: 197 YTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDR 256

Query: 476 MPFKPDESVWGPLLGACKEHRLPNLG--KLAALRVLDLKPNMMGTYIILS 523
           MP + D   W  ++    E+ + + G     A+R L + P++M    ++S
Sbjct: 257 MP-RRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVIS 305


>gi|11994503|dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1161

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 190/552 (34%), Positives = 315/552 (57%), Gaps = 8/552 (1%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           A  +FD MPER+VVSW+ +++G+        + ++F EM R  + PN FT S+ LKAC  
Sbjct: 431 AYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGL 490

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTT 184
           + +L     +HG  +K G E  + V NSL+D+Y+ C   ++ A  VF  +  ++ +SW  
Sbjct: 491 LNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCG-RINEAEKVFRRIVDRSLISWNA 549

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA--VRACASTGWVSFGKLIHAAVIK 242
           +I G+ H+G G   L  F  M    ++  P  F++   ++AC+STG +  GK IH  +++
Sbjct: 550 MIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVR 609

Query: 243 HGFG--SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECL 299
            GF   S+  +  S++D+Y +   L  A + FD++ EK +I+W+++I GY + G   E +
Sbjct: 610 SGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAM 669

Query: 300 NMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMY 359
            +F +++      + F  +SII   A  A L  G+Q+ A  V+       ++ N+++DMY
Sbjct: 670 GLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMY 729

Query: 360 AKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFM 419
            KCG + +++K F+EM  +D+++WT ++ GYG HG GK+++ +F EM++  + PD + ++
Sbjct: 730 LKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYL 789

Query: 420 AVLTACSHAGLVDEGLKYF-KSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPF 478
           AVL+ACSH+G++ EG + F K +  + + P  E Y CVVDLLGRAGR+KEA  LI +MP 
Sbjct: 790 AVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPI 849

Query: 479 KPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKF 538
           KP+  +W  LL  C+ H    LGK     +L +       Y+++SN+Y   G W E    
Sbjct: 850 KPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNA 909

Query: 539 RKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNET-AYEPD 597
           R++    G KKE GMSW+E+  +V  F + +     T  +   L+   R + E   Y   
Sbjct: 910 RELGNIKGLKKEAGMSWVEIEREVHFFRSGEDSHPLTPVIQETLKEAERRLREELGYVYG 969

Query: 598 IDCLIHDLEGET 609
           +   +HD++ E+
Sbjct: 970 LKHELHDIDDES 981



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 184/374 (49%), Gaps = 12/374 (3%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +  +L+  Y   G I EA  +F  + +R ++SW  MIAG+      ++A   F  M    
Sbjct: 515 VGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEAN 574

Query: 108 V--NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLE--GSIYVENSLMDVYATCCIS 163
           +   P+ FTL+S+LKAC     +     +HG  ++ G     S  +  SL+D+Y  C   
Sbjct: 575 IKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGY- 633

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           + +AR  F+ +K K  +SW++LI GYA  G     +G+FK +     +++ ++ S  +  
Sbjct: 634 LFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGV 693

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
            A    +  GK + A  +K   G    V+NS++DMY +   + +A + F EM  KD+I+W
Sbjct: 694 FADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISW 753

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
             +I GY K G   + + +F +M      P+   + ++++AC+    +  G+++ + ++ 
Sbjct: 754 TVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLE 813

Query: 343 -RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLV-TWTSMMIGYGAHGHGKEAI 400
             G+   +     ++D+  + G + +++ +   M  +  V  W +++     HG     I
Sbjct: 814 THGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGD----I 869

Query: 401 ELFDEMVKSGVRPD 414
           EL  E+ K  +R D
Sbjct: 870 ELGKEVGKILLRID 883



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 140/235 (59%), Gaps = 8/235 (3%)

Query: 248 NLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMK 306
           NL   N ++DMYC+      A + FD M E+++++W+ +++G+  +G  +  L++FS+M 
Sbjct: 411 NLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMG 470

Query: 307 SERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNIS 366
            +   PN FTF++ + AC  L AL  G Q+H   ++ G +  + + N+L+DMY+KCG I+
Sbjct: 471 RQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRIN 530

Query: 367 DSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV--RPDRIVFMAVLTA 424
           +++K+F  + DR L++W +M+ G+   G+G +A++ F  M ++ +  RPD     ++L A
Sbjct: 531 EAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKA 590

Query: 425 CSHAGLVDEGLKY--FKSMNDYNVNPNKEIYGCVVDLLGRAGRV---KEAYELIK 474
           CS  G++  G +   F   + ++   +  I G +VDL  + G +   ++A++ IK
Sbjct: 591 CSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIK 645



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 15/109 (13%)

Query: 40  LIPKGPSILATNLIKS----YFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQ 95
           L  K PS L T+++ S    Y   GL++EA   F EM  +DV+SWTV+I GY       +
Sbjct: 709 LAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKK 768

Query: 96  AWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLE 144
           +  +F EM+R+ + P+     +VL AC            H   IKEG E
Sbjct: 769 SVRIFYEMLRHNIEPDEVCYLAVLSACS-----------HSGMIKEGEE 806


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 197/564 (34%), Positives = 328/564 (58%), Gaps = 5/564 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A  L+  +   G +  A  +FDE+ E+D ++W  MIAG+T    +N+A   F  +    
Sbjct: 149 VANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDAN 208

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + P+  +L S+L A   +  L N   +H  A+K  L+ ++ + N+L+D+Y+ CC  +  A
Sbjct: 209 LKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCC-CVAYA 267

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
            LVF+ M  K+ +SWTT+I  YA +      L + +++  +G++++       + AC+  
Sbjct: 268 GLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGL 327

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +S  K +H   +K G  S+L + N I+D+Y     ++ A + F+ +  KD+++W ++I
Sbjct: 328 RCLSHAKEVHGYTLKRGL-SDLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMI 386

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           + Y  +G ++E L +F  MK     P+  T  SI++A A+L+AL+ G+++H  I R+G  
Sbjct: 387 SCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFM 446

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
              +  N+L+DMYA CG++ ++ K+F     + LV WT+M+  YG HG GK A+ELF  M
Sbjct: 447 LEGSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIM 506

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGR 465
               + PD I F+A+L ACSH+GL++EG +  ++M   Y + P  E Y C+VDLLGRA  
Sbjct: 507 EDQKLIPDHITFLALLYACSHSGLINEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANH 566

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           ++EAY  +KSM  +P   VW   LGAC+ H    LG++AA ++LDL P+  G+Y+++SN+
Sbjct: 567 LEEAYHFVKSMQIEPTAEVWCAFLGACRIHSNKKLGEIAAQKLLDLDPDSPGSYVLISNV 626

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           +AA G+W++  + R  M+G G KK  G SWIEV +KV  F+  DK    +  +Y  L  +
Sbjct: 627 FAASGRWKDVEEVRMRMKGGGLKKNPGCSWIEVGNKVHTFLVRDKSHPESYKIYQKLAQI 686

Query: 586 IRHM-NETAYEPDIDCLIHDLEGE 608
              +  E  Y P    ++H++  E
Sbjct: 687 TEKLEKEGGYVPQTKLVLHNVGKE 710



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 129/411 (31%), Positives = 228/411 (55%), Gaps = 13/411 (3%)

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           ++FT   VLKAC  ++ +   A +HG+ IK G +  ++V NSL+ +YA C   +  AR +
Sbjct: 9   DSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKC-NDILGARKL 67

Query: 171 FNDMKWKNDV-SWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           F+ M  +NDV SW ++I+ Y+ +G     LG+F+EM   GV  N Y+   A++AC  + +
Sbjct: 68  FDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSF 127

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
              G  IHAA++K     ++ V N+++ M+ RF  +S A + FDE+ EKD ITWN++IAG
Sbjct: 128 KKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAG 187

Query: 290 YEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           + ++G  +E L  F  ++     P+  +  SI+AA   L  L  G+++HA  ++  LD N
Sbjct: 188 FTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSN 247

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           L + N LIDMY+KC  ++ +  +F +M ++DL++WT+++  Y  +    EA++L  ++  
Sbjct: 248 LRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQT 307

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN---PNKEIYGCVVDLLGRAGR 465
            G+  D ++  + L ACS  GL    L + K ++ Y +     +  +   ++D+    G 
Sbjct: 308 KGMDVDTMMIGSTLLACS--GL--RCLSHAKEVHGYTLKRGLSDLMMQNMIIDVYADCGN 363

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPN 514
           +  A  + +S+  K D   W  ++     + L N  LG    ++   ++P+
Sbjct: 364 INYATRMFESIKCK-DVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPD 413



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 143/491 (29%), Positives = 244/491 (49%), Gaps = 38/491 (7%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPER-DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +A +L+  Y     I  AR LFD M ER DVVSW  +I+ Y+      +A  +F EM + 
Sbjct: 47  VANSLVSMYAKCNDILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKA 106

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V  N +TL + L+AC+          +H   +K      +YV N+L+ ++      M  
Sbjct: 107 GVGANTYTLVAALQACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFG-KMSY 165

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  +F+++  K++++W ++I G+  +G     L  F  +    ++ +  S    + A   
Sbjct: 166 AARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGR 225

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G++  GK IHA  +K+   SNL + N+++DMY +  C++ A   FD+M  KDLI+W T+
Sbjct: 226 LGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTV 285

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           IA Y ++   +E L +  K++++    +     S + AC+ L  LS  ++VH   ++RGL
Sbjct: 286 IAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGL 345

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             +L + N +ID+YA CGNI+ + ++F  +  +D+V+WTSM+  Y  +G   EA+ +F  
Sbjct: 346 S-DLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYL 404

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLK----YFKS---MNDYNVNPNKEIYGC--- 455
           M ++ V PD I  +++L+A +    +++G +     F+    +    VN   ++Y C   
Sbjct: 405 MKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGS 464

Query: 456 ---------------------VVDLLGRAGRVKEAYELIKSM---PFKPDESVWGPLLGA 491
                                +++  G  GR K A EL   M      PD   +  LL A
Sbjct: 465 LENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYA 524

Query: 492 CKEHRLPNLGK 502
           C    L N GK
Sbjct: 525 CSHSGLINEGK 535



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 165/328 (50%), Gaps = 4/328 (1%)

Query: 205 MLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264
           M + GV  + ++F   ++AC     +  G  IH  +IK G+ S + V NS++ MY + + 
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 265 LSDANQYFDEMTEK-DLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIA 322
           +  A + FD M E+ D+++WN+II+ Y  +G   E L +F +M+      N +T  + + 
Sbjct: 61  ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQ 120

Query: 323 ACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVT 382
           AC   +    G ++HA I++     ++ +ANAL+ M+ + G +S + +IF E+ ++D +T
Sbjct: 121 ACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNIT 180

Query: 383 WTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN 442
           W SM+ G+  +G   EA++ F  +  + ++PD +  +++L A    G +  G +      
Sbjct: 181 WNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAM 240

Query: 443 DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGK 502
              ++ N  I   ++D+  +   V  A  +   M  K D   W  ++ A  ++   +   
Sbjct: 241 KNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINK-DLISWTTVIAAYAQNNC-HTEA 298

Query: 503 LAALRVLDLKPNMMGTYIILSNIYAAEG 530
           L  LR +  K   + T +I S + A  G
Sbjct: 299 LKLLRKVQTKGMDVDTMMIGSTLLACSG 326


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 201/610 (32%), Positives = 322/610 (52%), Gaps = 48/610 (7%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I   +L+  Y     +E+A  +F+E+P+ DV SWTV+I+G+           +F +M   
Sbjct: 322 IRGNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQ 381

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAAL-VHGMAIKEGLEGSIYVENSLMDVYATC-CI-- 162
            V PN FTLS VLK+C    + S     +HG  ++ GL+    + NS++D Y  C C   
Sbjct: 382 GVCPNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGY 441

Query: 163 ---------------------------SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNG 195
                                       M  +  +F  +  K+  SW T+I G   +G  
Sbjct: 442 AEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCE 501

Query: 196 YGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSI 255
              L +  +M+  G   N  +FSIA+   +S   +  GK IH  V+K G   +  V NS+
Sbjct: 502 RVALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSL 561

Query: 256 LDMYCRFDCLSDANQYFDEMTEK---------------DLITWNTIIAGYEKSGSSE-CL 299
           +DMYC+   +  A+  F  + ++               + ++W+++++GY ++G  E  L
Sbjct: 562 IDMYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDAL 621

Query: 300 NMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMY 359
             FS M   +   + FT TS+++ACA+   L  G+QVH  I + G   ++ L +++IDMY
Sbjct: 622 KTFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMY 681

Query: 360 AKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFM 419
            KCG+++D+  IF++  DR++V WTSM+ G   HG G+EA+ LF+ M+  G+ P+ + F+
Sbjct: 682 VKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFV 741

Query: 420 AVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPF 478
            VLTACSHAGL++EG KYF+ M + Y + P  E + C+VDL GRAGR+ E  E I +   
Sbjct: 742 GVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAI 801

Query: 479 KPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKF 538
               SVW   L +C+ H+   +G     ++L+L+P   G YI+ S+I A E +WEE AK 
Sbjct: 802 SKLSSVWRSFLSSCRVHKNIEMGIWVCKKLLELEPFDAGPYILFSSICATEHRWEEAAKI 861

Query: 539 RKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDI 598
           R +M+  G KK    SWI+++++V  F+  D+       +Y  L+ LI  + E  Y  D+
Sbjct: 862 RSLMQQRGVKKNPSQSWIQLKNQVHSFVMGDRSHPQDTKIYSYLDELIGRLKEIGYSTDV 921

Query: 599 DCLIHDLEGE 608
             ++ D+E E
Sbjct: 922 TPVMQDVEQE 931



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 118/468 (25%), Positives = 221/468 (47%), Gaps = 63/468 (13%)

Query: 130 NAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGY 189
           N+ ++H   IK G  G     N L+++YA    +++ A  +F ++   +  SWT LI+G+
Sbjct: 306 NSEVLHAKLIKNGCVG--IRGNHLLNLYAKSQ-NLEQAHKMFEEIPQTDVFSWTVLISGF 362

Query: 190 AHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS-FGKLIHAAVIKHGFGSN 248
           A  G     LG+F +M  +GV  N ++ SI +++C+S    S  GK IH  ++++G   +
Sbjct: 363 ARIGLSADVLGLFTKMQDQGVCPNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLD 422

Query: 249 LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE----------- 297
             + NSILD Y +  C   A + F  M EKD ++WN +++ Y + G  +           
Sbjct: 423 AVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPG 482

Query: 298 ---------------------CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQV 336
                                 L +  KM +   + N  TF+  +   ++L+ L  G+Q+
Sbjct: 483 KDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQI 542

Query: 337 HAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR---------------DLV 381
           H  +++ G+  +  + N+LIDMY KCG +  +  IF  +                  + V
Sbjct: 543 HTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESV 602

Query: 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441
           +W+SM+ GY  +G  ++A++ F  M+ S V  D+    +V++AC+ AG+++ G +    +
Sbjct: 603 SWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQVHGYI 662

Query: 442 NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLG 501
                  +  +   ++D+  + G + +A+ LI +     +  +W  ++  C  H     G
Sbjct: 663 QKIGHGLDVFLGSSIIDMYVKCGSLNDAW-LIFNQAKDRNVVLWTSMISGCALH---GQG 718

Query: 502 KLAALRVLDL------KPNMMGTYIILSNIYAAEGKWEEFAKFRKIMR 543
           +  A+R+ +L       PN +    +L+    A G  EE  K+ ++MR
Sbjct: 719 R-EAVRLFELMINEGITPNEVSFVGVLTACSHA-GLLEEGCKYFRLMR 764


>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
          Length = 549

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 183/537 (34%), Positives = 313/537 (58%), Gaps = 12/537 (2%)

Query: 70  DEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLS 129
           D   E +V ++  +I+G+ +     + +  + +M    V P+ FT    +KAC  +  + 
Sbjct: 17  DPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACLDVLEIK 76

Query: 130 NAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGY 189
               +HG+  K GLE  +++ ++L++ Y    + M++A++ F ++  ++ V W  ++ GY
Sbjct: 77  K---IHGLLFKFGLELDVFIGSALVNCYLKFGL-MEHAQVAFEELPIRDVVLWNAMVNGY 132

Query: 190 AHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNL 249
           A  G     L  F+ M  E V  + ++ +  +   A  G ++ G++IH   +K G+ S +
Sbjct: 133 AQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRIIHGFAMKMGYDSGV 192

Query: 250 PVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSE 308
            V NS++DMY +  C+ DA + F+ M EKD+ +WN+I + +E+ G  +  L +  +M   
Sbjct: 193 AVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCGDHDGTLRLLDRMLGA 252

Query: 309 RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL--DG----NLALANALIDMYAKC 362
              P+  T T+++ AC+ LAAL  G+++H  ++  GL  DG    ++ L NA+IDMYAKC
Sbjct: 253 GIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKC 312

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
           G++ D+  +F  M ++D+ +W  M++GYG HG+G EA+E+F  M +  ++PD + F+ VL
Sbjct: 313 GSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVL 372

Query: 423 TACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481
           +ACSHAG V +G  +   M + Y+V P  E Y CV+D+LGRAG++ EAYEL  +MP + +
Sbjct: 373 SACSHAGFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEAN 432

Query: 482 ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKI 541
             VW  LL AC+ H+   L ++AA RV +L+P   G+Y+++SN+Y A G++EE  + R  
Sbjct: 433 PVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHT 492

Query: 542 MRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDI 598
           MR    +K  G SWIE+++ V  F++ D+       +Y  L  L   + E  Y PD+
Sbjct: 493 MRQQNVRKTPGCSWIELKNGVHVFVSADRAHPEAYSIYAGLNSLTARLCEHGYVPDV 549



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 100/359 (27%), Positives = 180/359 (50%), Gaps = 12/359 (3%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + + L+  Y   GL+E A+  F+E+P RDVV W  M+ GY            F  M    
Sbjct: 93  IGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDES 152

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDN 166
           V P+ FT++ +L     M  L+N  ++HG A+K G +  + V NSL+D+Y  C CI  ++
Sbjct: 153 VVPSRFTVTGILSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCI--ED 210

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  +F  M+ K+  SW ++ + +   G+  G L +   ML  G++ +  + +  + AC+ 
Sbjct: 211 ALEIFEMMREKDIFSWNSIXSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSH 270

Query: 227 TGWVSFGKLIHAAVIKHGFG------SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
              +  G+ IH  +I  G G       ++ + N+++DMY +   + DA+  F+ M  KD+
Sbjct: 271 LAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMXNKDV 330

Query: 281 ITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
            +WN +I GY   G  +E L MFS+M   +  P+  TF  +++AC+    +S G+   A 
Sbjct: 331 ASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLAQ 390

Query: 340 IVRR-GLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHG 396
           +  +  +   +     +IDM  + G + ++ ++   M  + + V W +++     H H 
Sbjct: 391 MKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHA 449



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 38/76 (50%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +L   +I  Y   G + +A  +F+ M  +DV SW +MI GY      N+A  +F  M   
Sbjct: 300 LLKNAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEV 359

Query: 107 EVNPNAFTLSSVLKAC 122
           ++ P+  T   VL AC
Sbjct: 360 QLKPDEVTFVGVLSAC 375



 Score = 42.0 bits (97), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 358 MYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI 416
           MY+KC  ++ +  IFS+ +   ++  + +++ G+  +G  +E  E + +M   GV PD+ 
Sbjct: 1   MYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKF 60

Query: 417 VFMAVLTAC 425
            F   + AC
Sbjct: 61  TFPCAIKAC 69


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 184/508 (36%), Positives = 300/508 (59%), Gaps = 3/508 (0%)

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           ++  E+ P      S++ AC   K+L+ A  +H    +  L G  ++ NSL+ +Y  C  
Sbjct: 53  LLTGELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCG- 111

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
           ++ +AR VF+ +  ++ VSWT LITGYA +      LG+  +ML      + ++F+  ++
Sbjct: 112 AVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLK 171

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           A  + G    G+ +HA  +K+    ++ V +++LDMY R   +  A + FD +  K+ ++
Sbjct: 172 AAGACGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVS 231

Query: 283 WNTIIAGYEKSGSSECLNM-FSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           WN +IAG+ + G  E   M F++M+   F    FT++S+ +A A + AL  G+ VHA ++
Sbjct: 232 WNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMI 291

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           + G      +AN ++ MYAK G++ D++K+F  +  RDLVTW +M+  +  +G GKEA+ 
Sbjct: 292 KSGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVA 351

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461
            F+E+ K G++ ++I F++VLTACSH GLV EG +YF  M DYNV P  + Y   VDLLG
Sbjct: 352 HFEEIRKYGIQLNQITFLSVLTACSHGGLVKEGKQYFDMMKDYNVEPEIDHYVSFVDLLG 411

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           RAG +KEA   +  MP +P  +VWG LLGAC+ H+   +G+ AA  V +L P   G  ++
Sbjct: 412 RAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKIGQYAADHVFELDPEDTGPPVL 471

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGV 581
           L NIYA+ G+W++ A+ RK+M+  G KKE   SW+E+ + V  F+A+D     ++ +Y +
Sbjct: 472 LYNIYASTGQWDDAARVRKMMKATGVKKEPACSWVEIENSVHMFVADDSTHPKSEEIYRM 531

Query: 582 LEMLIRHMNETAYEPDID-CLIHDLEGE 608
            E +   + +  Y P+ D  L+H  E E
Sbjct: 532 WEEVNTRIKKAGYVPNTDYVLLHIKEQE 559



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 102/302 (33%), Positives = 157/302 (51%), Gaps = 13/302 (4%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   L  +LI  Y   G + +AR +FD +P RDVVSWT +I GY   +   +A  +  +M
Sbjct: 95  GDGFLLNSLIHMYCKCGAVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDM 154

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           +R    P+ FT +S LKA            +H +A+K  L+  +YV ++L+D+YA  C  
Sbjct: 155 LRARFRPSGFTFTSFLKAAGACGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYAR-CQQ 213

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           MD A  VF+ +  KN+VSW  LI G+A  G+G   L  F EM   G     +++S    A
Sbjct: 214 MDMAIRVFDWLDSKNEVSWNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSA 273

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
            A  G +  G+ +HA +IK G      V N+IL MY +   + DA + FD + ++DL+TW
Sbjct: 274 LARIGALEQGRWVHAHMIKSGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVTW 333

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           NT++  + + G   E +  F +++      N  TF S++ AC+           H G+V+
Sbjct: 334 NTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTACS-----------HGGLVK 382

Query: 343 RG 344
            G
Sbjct: 383 EG 384



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 156/311 (50%), Gaps = 6/311 (1%)

Query: 204 EMLLEG-VEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRF 262
           ++LL G +   P  +   + ACA +  ++  + IH+ + +     +  ++NS++ MYC+ 
Sbjct: 51  DLLLTGELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKC 110

Query: 263 DCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSII 321
             +SDA   FD +  +D+++W  +I GY ++   +E L +   M   RF P+ FTFTS +
Sbjct: 111 GAVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFL 170

Query: 322 AACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLV 381
            A         G+Q+HA  V+  LD ++ + +AL+DMYA+C  +  + ++F  +  ++ V
Sbjct: 171 KAAGACGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEV 230

Query: 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441
           +W +++ G+   G G+  +  F EM ++G       + +V +A +  G +++G      M
Sbjct: 231 SWNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHM 290

Query: 442 NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLG 501
                     +   ++ +  ++G + +A ++   +  + D   W  +L A  ++    LG
Sbjct: 291 IKSGQKLTAFVANTILGMYAKSGSMVDARKVFDRVD-QRDLVTWNTMLTAFAQY---GLG 346

Query: 502 KLAALRVLDLK 512
           K A     +++
Sbjct: 347 KEAVAHFEEIR 357


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 191/523 (36%), Positives = 303/523 (57%), Gaps = 8/523 (1%)

Query: 88  TSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSI 147
           TS N HN+            +NP  +   S L  C+   +L+    VH  A   G+  +I
Sbjct: 40  TSLNLHNREEESSKFHFLQRLNPKFYI--SALVNCR---NLTQVRQVHAQASVHGMLENI 94

Query: 148 YVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLL 207
            V N L+  Y+    ++D+A  +F+ M  ++ VSW+ ++ G+A  G+     G F+E++ 
Sbjct: 95  VVANKLIYFYSYY-RALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIR 153

Query: 208 EGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSD 267
            G   + Y+    +RAC     +  G+LIH  V K G   +  V  +++DMY +   + D
Sbjct: 154 CGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIED 213

Query: 268 ANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACAT 326
           A   FD+M E+DL+TW  +I GY + G ++E L +F KM+ E   P+     +++ ACA 
Sbjct: 214 ARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAK 273

Query: 327 LAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSM 386
           L A+   + +   I R+    ++ L  A+IDMYAKCG +  +++IF  M ++++++W++M
Sbjct: 274 LGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAM 333

Query: 387 MIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYN 445
           +  YG HG G++A++LF  M+ SG+ PD+I   ++L ACSHAGLV+EGL++F SM  DY+
Sbjct: 334 IAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYS 393

Query: 446 VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAA 505
           V  + + Y CVVDLLGRAGR+ EA +LIKSM  + DE +WG  LGAC+ H+   L + AA
Sbjct: 394 VRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLGACRTHKDVVLAEKAA 453

Query: 506 LRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGF 565
             +L+L+    G Y++LSNIYA  G+WE+ AK R +M     KK  G +WIEV +K   F
Sbjct: 454 TSLLELQSQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRLKKTPGWTWIEVDNKSHQF 513

Query: 566 IANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
              D     ++ +Y +L+ L   +    Y PD + ++HD++ E
Sbjct: 514 SVGDTTHPRSKEIYEMLKSLSNKLELVGYVPDTNFVLHDVDEE 556



 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 178/484 (36%), Positives = 290/484 (59%), Gaps = 3/484 (0%)

Query: 127  SLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLI 186
            +L+    VH  A   G+  ++ V N L+  Y+    ++D+A  +F+ M  ++ VSW+ ++
Sbjct: 750  NLTQVRQVHXQASVHGMLQNLIVANKLVXFYSYY-RALDDAYGLFDGMCVRDSVSWSVMV 808

Query: 187  TGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFG 246
             G+A  G+     G F+E++  G   + Y+    +RAC     +  G+LIH  V K G  
Sbjct: 809  GGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLD 868

Query: 247  SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKM 305
             +  V  +++DMY +   + DA   FD+M E+DL+TW  +I GY + G++ E L +F KM
Sbjct: 869  LDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKM 928

Query: 306  KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNI 365
            + E   P+     +++ ACA L A+   + +   I R+    ++ L  A+IDM+AKCG +
Sbjct: 929  REEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCV 988

Query: 366  SDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTAC 425
              +++IF  M ++++++W++M+  YG HG G++A++LF  M++SG+ P++I  +++L AC
Sbjct: 989  ESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYAC 1048

Query: 426  SHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESV 484
            SHAGLV+EGL++F  M  DY+V  + + Y CVVDLLGRAGR+ EA +LI SM  + DE +
Sbjct: 1049 SHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGL 1108

Query: 485  WGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544
            WG  LGAC+ H+   L + AA  +L+L+P   G YI+LSNIYA  G+WE+ AK R +M  
Sbjct: 1109 WGAFLGACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRDLMSQ 1168

Query: 545  MGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHD 604
               KK  G +WIEV +K   F   D     ++ +Y +L+ L   +    Y PD + ++HD
Sbjct: 1169 RRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHD 1228

Query: 605  LEGE 608
            ++ E
Sbjct: 1229 VDEE 1232



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 180/355 (50%), Gaps = 26/355 (7%)

Query: 47   ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            I+A  L+  Y     +++A  LFD M  RD VSW+VM+ G+     +   +  F E++R 
Sbjct: 771  IVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRC 830

Query: 107  EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
               P+ +TL  V++AC+ +K+L    L+H +  K GL+   +V  +L+D+Y   C  +++
Sbjct: 831  GARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGK-CREIED 889

Query: 167  ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
            AR +F+ M  ++ V+WT +I GYA  GN    L +F +M  EGV  +  +    V ACA 
Sbjct: 890  ARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAK 949

Query: 227  TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
             G +   + I   + +  F  ++ +  +++DM+ +  C+  A + FD M EK++I+W+ +
Sbjct: 950  LGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAM 1009

Query: 287  IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
            IA Y   G   + L++F  M      PN  T  S++ AC+           HAG+V  GL
Sbjct: 1010 IAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACS-----------HAGLVEEGL 1058

Query: 346  ------------DGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMM 387
                          ++     ++D+  + G + ++ K+   M+ ++D   W + +
Sbjct: 1059 RFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFL 1113


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 205/567 (36%), Positives = 317/567 (55%), Gaps = 11/567 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHN-QAWTVFVEMVR 105
            +  +L+  Y   GL+EEAR +F  M  RD+VSW  ++AG    N H+ +A  +F +   
Sbjct: 241 FVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLV-LNGHDLEALQLFHDSRS 299

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           +       T ++V+K C  +K L  A  +H   +K G      V  +LMD Y+     + 
Sbjct: 300 SITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAG-QLG 358

Query: 166 NARLVFNDMKW-KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           NA  +F  M   +N VSWT +I G   +G+      +F  M  +GV  N +++S  + A 
Sbjct: 359 NALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTAS 418

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
            +    S    IHA VIK  +     V  ++L  Y +     +A   F  + +KD+++W+
Sbjct: 419 VA----SLPPQIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWS 474

Query: 285 TIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACAT-LAALSCGQQVHAGIVR 342
            ++  Y ++G S+   N+F KM      PN FT +S+I ACA+  A +  G+Q HA  ++
Sbjct: 475 AMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAISIK 534

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
                 L +++AL+ MYA+ G+I  +Q IF   +DRDLV+W SM+ GY  HG+ ++A+++
Sbjct: 535 HRCHDALCVSSALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDV 594

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLG 461
           F +M   G+  D + F++V+  C+HAGLV+EG +YF SM  DY + P  E Y C+VDL  
Sbjct: 595 FRQMEAEGIEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYS 654

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           RAG++ EA  LI+ M F     VW  LLGACK H+   LGKLAA ++L L+P    TY++
Sbjct: 655 RAGKLDEAMSLIEGMSFPAGPMVWRTLLGACKVHKNVELGKLAAEKLLSLEPFDSATYVL 714

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGV 581
           LSNIY+A GKW+E  + RK+M     KKE G SWI++++KV  FIA+DK    ++ +Y  
Sbjct: 715 LSNIYSAAGKWKEKDEVRKLMDTKKVKKEAGCSWIQIKNKVHSFIASDKSHPLSEQIYAK 774

Query: 582 LEMLIRHMNETAYEPDIDCLIHDLEGE 608
           L  +   + +  Y PD    +H++  E
Sbjct: 775 LRAMTTKLKQEGYCPDTSFALHEVAEE 801



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 120/394 (30%), Positives = 200/394 (50%), Gaps = 12/394 (3%)

Query: 38  PPLIPKGPSILATNL-IKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQA 96
           P L PK  S LA ++ +++  +      AR  FDE+P R+ +   +    +      +QA
Sbjct: 29  PELAPKSQSTLACSVPLENQTNLNDATGARQAFDEIPHRNTLDHALF--DHARRGSVHQA 86

Query: 97  WTVFVEMVR---NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLE-GSIYVENS 152
              F+++ R     V   A  L  VLK C  +        +HG+ I+ G + G + V  S
Sbjct: 87  LDHFLDVHRCHGGRVGGGA--LVGVLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTS 144

Query: 153 LMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEM 212
           L+D+Y     S+ + R VF  M  +N V+WT+L+TGY   G     + +F  M  EGV  
Sbjct: 145 LVDMYMKW-HSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWP 203

Query: 213 NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYF 272
           N  +F+  +   AS G V  G+ +HA  +K G  S + V NS+++MY +   + +A   F
Sbjct: 204 NSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVF 263

Query: 273 DEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALS 331
             M  +D+++WNT++AG   +G   E L +F   +S        T+ ++I  CA +  L 
Sbjct: 264 CGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLG 323

Query: 332 CGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGY 390
             +Q+H+ +++RG      +  AL+D Y+K G + ++  IF  MS  +++V+WT+M+ G 
Sbjct: 324 LARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGC 383

Query: 391 GAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTA 424
             +G    A  LF  M + GV P+   +  +LTA
Sbjct: 384 IQNGDVPLAAALFSRMREDGVAPNDFTYSTILTA 417



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 166/329 (50%), Gaps = 5/329 (1%)

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEM-LLEGVEMNPYSFSIAVRACA 225
           AR  F+++  +N +     +  +A  G+ +  L  F ++    G  +   +    ++ C 
Sbjct: 57  ARQAFDEIPHRNTLDHA--LFDHARRGSVHQALDHFLDVHRCHGGRVGGGALVGVLKVCG 114

Query: 226 STGWVSFGKLIHAAVIKHGFG-SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           S      GK +H   I+ G    ++ V  S++DMY ++  + D  + F+ M +++++TW 
Sbjct: 115 SVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWT 174

Query: 285 TIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           +++ GY + G+ S+ + +F +M++E   PN  TF S+++  A+   +  G++VHA  V+ 
Sbjct: 175 SLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKF 234

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G    + + N+L++MYAKCG + +++ +F  M  RD+V+W ++M G   +GH  EA++LF
Sbjct: 235 GCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLF 294

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
            +   S     +  +  V+  C++   +    +   S+     +    +   ++D   +A
Sbjct: 295 HDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKA 354

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGAC 492
           G++  A ++   M    +   W  ++  C
Sbjct: 355 GQLGNALDIFLLMSGSQNVVSWTAMINGC 383



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 137/273 (50%), Gaps = 12/273 (4%)

Query: 28  SVKKSSIQSDPPLIP--------KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVS 79
           ++  +S+ S PP I         +  SI+ T L+ SY      EEA ++F  + ++DVVS
Sbjct: 413 TILTASVASLPPQIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVS 472

Query: 80  WTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG-MKSLSNAALVHGMA 138
           W+ M+  Y      + A  +F++M  + + PN FT+SSV+ AC      +      H ++
Sbjct: 473 WSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAIS 532

Query: 139 IKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGG 198
           IK     ++ V ++L+ +YA    S+++A+ +F     ++ VSW ++++GYA  G     
Sbjct: 533 IKHRCHDALCVSSALVSMYARKG-SIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKA 591

Query: 199 LGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIK-HGFGSNLPVMNSILD 257
           L VF++M  EG+EM+  +F   +  CA  G V  G+    ++ + +G    +     ++D
Sbjct: 592 LDVFRQMEAEGIEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVD 651

Query: 258 MYCRFDCLSDANQYFDEMT-EKDLITWNTIIAG 289
           +Y R   L +A    + M+     + W T++  
Sbjct: 652 LYSRAGKLDEAMSLIEGMSFPAGPMVWRTLLGA 684


>gi|357490167|ref|XP_003615371.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355516706|gb|AES98329.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 765

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 194/572 (33%), Positives = 317/572 (55%), Gaps = 20/572 (3%)

Query: 19  PPIIKQSLQSVKKSSIQSDPPLIPKGPS----ILATNLIKSYFDEGLIEEARTLFDEMPE 74
           PP+++Q L++   SS Q     I K  S     L++ L+  Y   G +E A+ +FD M  
Sbjct: 77  PPLLQQCLENCSFSSTQIIHCHIVKTGSHEDPFLSSFLVTVYAKCGRMECAQQVFDHMNR 136

Query: 75  RDVVSWTVMIAGYTSFNCHNQAWTVFVEMV-RNEVNPNAFTLSSVLKACKGMKSLSNAAL 133
           R+ V+WT ++ GY   +    A  +F EM+  +E  P+ +TL+  L AC  + SL     
Sbjct: 137 RNAVAWTNLMKGYVQNSMPKHAIHLFEEMLLHSECYPSNYTLAIALNACTSLHSLKLGEQ 196

Query: 134 VHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSG 193
           +H   IK  ++    + N+L  +Y  C   ++     F  +K K+ +SWT  I+     G
Sbjct: 197 LHAYIIKYHVDFDTSIGNALCSLYTKCGGKLEVGLTAFRRIKEKDVISWTAAISACGEKG 256

Query: 194 NGYGGLGVFKEMLLEGVEMNP--YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251
               G+ VF EMLL+ V++ P  Y+ + A+  C     +  G  +HA   K G+ SNL V
Sbjct: 257 EAMKGVRVFVEMLLDEVQVQPNEYTLTSALSQCCEVKCLELGIQVHALCTKLGYESNLRV 316

Query: 252 MNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEK------------SGSSECL 299
            NS+L +Y +  C+ +A + F  M + +L+TWN +IAG+ +                E L
Sbjct: 317 RNSLLYLYLKCGCIVEAQRLFKGMNDVNLVTWNAMIAGHAQMMELSKDNLSAYQKGIEAL 376

Query: 300 NMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMY 359
           N+FSK+      P+ FTF+S+++ C+ + AL  G+Q+HA  ++ G   ++ + +++I+MY
Sbjct: 377 NLFSKLNRSGMKPDPFTFSSVLSVCSKMMALEQGEQIHARTIKTGFLSDVVVGSSMINMY 436

Query: 360 AKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFM 419
            KCG+I  + K+F EMS R ++ WT+M+ G+  HG  K+A+ LF++M   G+RP+ + F+
Sbjct: 437 NKCGSIERASKVFLEMSIRTMILWTTMITGFAQHGWSKQALNLFEDMKLVGIRPNLVTFV 496

Query: 420 AVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPF 478
            VL+AC  AG+V+E   YF+ M  +Y + P  + Y C+VD+L R G+V+EA++LIK M +
Sbjct: 497 GVLSACGSAGMVNEAFNYFEIMQKEYKIKPVMDHYVCLVDMLVRLGQVQEAFDLIKKMDY 556

Query: 479 KPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKF 538
           K  E +W  L+  C       LG  AA ++L LKP    TY +L N Y + G++++ ++ 
Sbjct: 557 KASEFIWSNLIVGCLSQGNLELGCDAAEKLLSLKPKDTETYKLLLNAYVSAGRYDDVSRV 616

Query: 539 RKIMRGMGSKKEVGMSWIEVRDKVCGFIANDK 570
             IMR     +    SWI ++D+V  F  NDK
Sbjct: 617 ENIMREEKIGELKDWSWISIKDRVYSFQTNDK 648



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 9/183 (4%)

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           +  ++  C    + S  Q +H  IV+ G   +  L++ L+ +YAKCG +  +Q++F  M+
Sbjct: 76  YPPLLQQCLENCSFSSTQIIHCHIVKTGSHEDPFLSSFLVTVYAKCGRMECAQQVFDHMN 135

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEM-VKSGVRPDRIVFMAVLTACSHAGLVDEGL 435
            R+ V WT++M GY  +   K AI LF+EM + S   P        L AC+    +  G 
Sbjct: 136 RRNAVAWTNLMKGYVQNSMPKHAIHLFEEMLLHSECYPSNYTLAIALNACTSLHSLKLGE 195

Query: 436 KYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKE----AYELIKSMPFKPDESVWGPLLGA 491
           +    +  Y+V+ +  I   +  L  + G   E    A+  IK    + D   W   + A
Sbjct: 196 QLHAYIIKYHVDFDTSIGNALCSLYTKCGGKLEVGLTAFRRIK----EKDVISWTAAISA 251

Query: 492 CKE 494
           C E
Sbjct: 252 CGE 254


>gi|357481223|ref|XP_003610897.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512232|gb|AES93855.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 774

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 206/627 (32%), Positives = 331/627 (52%), Gaps = 35/627 (5%)

Query: 6   LLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEA 65
           L  YA  FH       IKQ + ++    +   P +  +    L  NL+  Y   G ++ A
Sbjct: 78  LQDYAFLFHACAQKKYIKQGM-ALHHYILNKHPKI--QNDIFLTNNLLNMYCKCGHLDYA 134

Query: 66  RTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGM 125
           R LFD+MP R+ VSWTV+++GY  F    + + +F  M+     PN F  +SVL AC+  
Sbjct: 135 RYLFDQMPRRNFVSWTVLVSGYAQFGLIRECFALFSGMLAC-FRPNEFAFASVLCACEE- 192

Query: 126 KSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC--------ISMDNARLVFNDMKWK 177
           + +     VH  A+K  L+ S+YV N+L+ +Y+ C          + D+A +VF  M+++
Sbjct: 193 QDVKYGLQVHAAALKMSLDFSVYVANALITMYSKCSGGFGGSCDQTTDDAWMVFKSMEYR 252

Query: 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFS---IAVRACASTG------ 228
           N +SW ++I+G+   G G   +G+F  M   G+  N  +      ++  C ST       
Sbjct: 253 NLISWNSMISGFQFRGLGDKAIGLFAHMYCNGIRFNSTTLLGVLSSLNHCMSTSDDINNT 312

Query: 229 -WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRF-----DCLSDANQYFDEMTEKDLIT 282
             +     +H   +K G  S + V+ +++  Y        DC      + D   E D+++
Sbjct: 313 HHLKNCFQLHCLTVKSGLISEVEVVTALVKSYADLGGHISDCF---KLFLDTSGEHDIVS 369

Query: 283 WNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           W  II+ + +    +   +F ++  E F  +  TF+  + ACA         +VH+ +++
Sbjct: 370 WTAIISVFAERDPEQAFLLFCQLHRENFVLDRHTFSIALKACAYFVTEKNATEVHSQVMK 429

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
           +G   +  ++NALI  Y + G+++ S+++F+EM   DLV+W SM+  Y  HG  K+A++L
Sbjct: 430 QGFHNDTVVSNALIHAYGRSGSLALSEQVFTEMGCHDLVSWNSMLKSYAIHGRAKDALDL 489

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLG 461
           F +M    V PD   F+A+L ACSHAGLV+EG + F SM + + + P+ + Y C+VDL G
Sbjct: 490 FKQM---DVHPDSATFVALLAACSHAGLVEEGTQIFNSMTESHGIAPHLDHYSCMVDLYG 546

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           RAG++ EA ELI+ MP KPD  +W  LLG+C++H   +L KLAA +   L P     YI 
Sbjct: 547 RAGKIFEAEELIRKMPMKPDSVIWSSLLGSCRKHGEADLAKLAADKFKVLDPKNSLAYIQ 606

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGV 581
           +SNIY++ G + E    RK MR    +K  G+SW+EV  +V  F +  +     Q +   
Sbjct: 607 MSNIYSSGGSFIEAGLIRKEMRDSKVRKRPGLSWVEVGKQVHEFTSGGQHHPKRQAILSR 666

Query: 582 LEMLIRHMNETAYEPDIDCLIHDLEGE 608
           LE LI  + E  Y P+I   +HD+E E
Sbjct: 667 LETLIGQLKEMGYAPEIGSALHDIEVE 693


>gi|297742828|emb|CBI35582.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 193/527 (36%), Positives = 306/527 (58%), Gaps = 4/527 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCH-NQAWTVFVEMVR 105
            +   L+  Y + G + +A  +FDEMPE+D+VSW  MI  ++    H   A  +F  M+ 
Sbjct: 77  FVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGWHYRDALDMFRLMID 136

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             + PN+ T+SS L     ++       VHG +I+ GLE  I++ NSL+D+YA    S +
Sbjct: 137 EGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIANSLIDMYAKSGHSTE 196

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A  VF  +  KN VSW  +I  +A +      +G+ ++M   G   N  +F+  + ACA
Sbjct: 197 -ASNVFYKLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNSVTFTNVLPACA 255

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
             G V  GK IHA  I  G   +L V N++ DMY +   L  A   FD  + +D +++N 
Sbjct: 256 RMGLVRPGKEIHARSIHMGCAFDLFVSNALTDMYAKSGHLKLARNVFD-TSLRDEVSYNI 314

Query: 286 IIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I G+ + S  SE L++FS+M+      +  +F   ++ACA L A+  G+++H  ++R+ 
Sbjct: 315 LIVGHSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSACANLTAIKQGKEIHGFLLRKL 374

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
              +L +AN+L+D Y KCG I  ++ IF  M+++D+ +W +M++GYG  G    AI+LF+
Sbjct: 375 FHIHLFVANSLLDFYTKCGRIGLARNIFDRMTNKDVASWNTMILGYGMLGELDTAIDLFE 434

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
            M K  V  D + F+AVL+ACSH GL+++G KYF  +    + P +  Y C+VDLLGRAG
Sbjct: 435 NMRKDDVEYDSVSFIAVLSACSHGGLLEKGRKYFDELKARGIEPTQMHYACMVDLLGRAG 494

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
            ++EA ELIK +P  PD ++WG LLGAC+ +    L   AA  + +LKP   G Y +LSN
Sbjct: 495 LMEEAAELIKGLPIVPDANIWGALLGACRIYGNLELAAWAAEHLFELKPEHSGYYTLLSN 554

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKM 571
           +YA  G+W+E  + R++M+  G KK  G SW+++ ++   F+  +K+
Sbjct: 555 MYAETGRWDEANRIRELMKSRGVKKSPGCSWVQIGEQAHAFVVGEKI 601



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 115/412 (27%), Positives = 214/412 (51%), Gaps = 6/412 (1%)

Query: 80  WTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAI 139
           W  +I GY S         V+ +MVR  V P+  T   VLKAC     +     VHG  +
Sbjct: 10  WNTLIRGY-SIAGVGGGLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHGSVV 68

Query: 140 KEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGY-GG 198
           K G E  ++V N+L+  Y  C    D  R VF++M  K+ VSW T+I  ++ +G  Y   
Sbjct: 69  KLGFESDVFVGNTLLSFYGNCGGLRDAGR-VFDEMPEKDLVSWNTMIGVFSVNGWHYRDA 127

Query: 199 LGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDM 258
           L +F+ M+ EG++ N  + S  +       +   G+ +H + I+ G  S++ + NS++DM
Sbjct: 128 LDMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIANSLIDM 187

Query: 259 YCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTF 317
           Y +    ++A+  F ++  K++++WN +IA + ++      + +  +M+     PN  TF
Sbjct: 188 YAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNSVTF 247

Query: 318 TSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD 377
           T+++ ACA +  +  G+++HA  +  G   +L ++NAL DMYAK G++  ++ +F + S 
Sbjct: 248 TNVLPACARMGLVRPGKEIHARSIHMGCAFDLFVSNALTDMYAKSGHLKLARNVF-DTSL 306

Query: 378 RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY 437
           RD V++  +++G+       E++ LF EM   G++ D + FM  L+AC++   + +G + 
Sbjct: 307 RDEVSYNILIVGHSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSACANLTAIKQGKEI 366

Query: 438 FKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
              +     + +  +   ++D   + GR+  A  +   M  K D + W  ++
Sbjct: 367 HGFLLRKLFHIHLFVANSLLDFYTKCGRIGLARNIFDRMTNK-DVASWNTMI 417



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 108/216 (50%), Gaps = 2/216 (0%)

Query: 283 WNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           WNT+I GY  +G    L ++++M      P+  TF  ++ ACA    +  G++VH  +V+
Sbjct: 10  WNTLIRGYSIAGVGGGLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHGSVVK 69

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG-HGKEAIE 401
            G + ++ + N L+  Y  CG + D+ ++F EM ++DLV+W +M+  +  +G H ++A++
Sbjct: 70  LGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGWHYRDALD 129

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461
           +F  M+  G++P+ I   + L           G +   S     +  +  I   ++D+  
Sbjct: 130 MFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIANSLIDMYA 189

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
           ++G   EA  +   +  K   S W  ++    ++R 
Sbjct: 190 KSGHSTEASNVFYKLDAKNVVS-WNAMIANFAQNRF 224


>gi|242076522|ref|XP_002448197.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
 gi|241939380|gb|EES12525.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
          Length = 766

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 198/561 (35%), Positives = 317/561 (56%), Gaps = 10/561 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I+   L+  Y   G + +   LF+ + ++D++SW  +IAG         A  +F EM+  
Sbjct: 184 IVQNALVTMYSKSGSVGDGFALFERIRDKDLISWGSIIAGLAQQGREMDALQIFREMIAE 243

Query: 107 EVN-PNAFTLSSVLKACKGM-KSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
            V+ PN F   SV +AC  +  SL     +HG+++K  L+ + Y   SL D+YA C   +
Sbjct: 244 GVHHPNEFHFGSVFRACSVVVNSLEYGEQIHGVSVKYQLDRNSYAGCSLSDMYARCN-EL 302

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           D+AR VF  ++  + VSW +LI  ++  G     + +F EM   G  + P   ++    C
Sbjct: 303 DSARKVFYRIESPDLVSWNSLINAFSAKGLLSEAMVLFSEMRDSG--LRPDGITVMALLC 360

Query: 225 ASTGWVSF--GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           A  G+ +   G+ IH+ ++K G G ++ V NS+L MY R    S A   F E  ++D++T
Sbjct: 361 ACVGYDALHQGRSIHSYLVKLGLGGDVIVSNSLLSMYARCLDFSSAMDVFHETHDRDVVT 420

Query: 283 WNTII-AGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           WN+I+ A  +     +   +FS +     S +  +  ++++A A L      +QVHA   
Sbjct: 421 WNSILTACVQHQHLEDVFKLFSLLHRSMPSLDRISLNNVLSASAELGYFEMVKQVHAYAF 480

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEM-SDRDLVTWTSMMIGYGAHGHGKEAI 400
           + GL G+  L+N LID YAKCG++ D+ K+F  M + RD+ +W+S+++GY   G+ KEA+
Sbjct: 481 KVGLVGDAMLSNGLIDTYAKCGSLDDANKLFEIMGTGRDVFSWSSLIVGYAQFGYAKEAL 540

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDL 459
           +LF  M   GV+P+ + F+ VLTACS  GLVDEG  Y+  M  +Y + P +E   CV+DL
Sbjct: 541 DLFARMRNLGVKPNHVTFVGVLTACSRVGLVDEGCYYYSIMKPEYGIVPTREHCSCVLDL 600

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
           L RAGR+ EA + +  MPF+PD  +W  LL A + H   ++GK AA  VL++ P+    Y
Sbjct: 601 LARAGRLSEAAKFVDQMPFEPDIIMWKTLLAASRTHNDVDMGKRAAEGVLNIDPSHSAAY 660

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVY 579
           ++L NIYA+ G W EFA+ +K MR  G +K  G SWI+++ ++  FI  D+    +  +Y
Sbjct: 661 VLLCNIYASSGNWNEFARLKKDMRSSGVQKSPGKSWIKLKGELKVFIVEDRSHPESDEIY 720

Query: 580 GVLEMLIRHMNETAYEPDIDC 600
            +LE++   M +  Y P++ C
Sbjct: 721 TMLEVIGLEMVKAGYIPELSC 741



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 145/507 (28%), Positives = 251/507 (49%), Gaps = 15/507 (2%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           +IL+ +LI  Y   G  + AR +FD M +R+ VSW  +IA +   +    A  +F  M+R
Sbjct: 82  TILSNHLITMYGRCGAPDSARVVFDGMLDRNPVSWAAVIAAHAQNSRCADAMGLFSSMLR 141

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           +   P+ F L S + AC  +  L     VH  AIK      + V+N+L+ +Y+    S+ 
Sbjct: 142 SGTMPDQFALGSAICACSELGDLGLGRQVHAQAIKWESGSDLIVQNALVTMYSKSG-SVG 200

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEM-NPYSFSIAVRAC 224
           +   +F  ++ K+ +SW ++I G A  G     L +F+EM+ EGV   N + F    RAC
Sbjct: 201 DGFALFERIRDKDLISWGSIIAGLAQQGREMDALQIFREMIAEGVHHPNEFHFGSVFRAC 260

Query: 225 A-STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           +     + +G+ IH   +K+    N     S+ DMY R + L  A + F  +   DL++W
Sbjct: 261 SVVVNSLEYGEQIHGVSVKYQLDRNSYAGCSLSDMYARCNELDSARKVFYRIESPDLVSW 320

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N++I  +   G  SE + +FS+M+     P+  T  +++ AC    AL  G+ +H+ +V+
Sbjct: 321 NSLINAFSAKGLLSEAMVLFSEMRDSGLRPDGITVMALLCACVGYDALHQGRSIHSYLVK 380

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            GL G++ ++N+L+ MYA+C + S +  +F E  DRD+VTW S++     H H ++  +L
Sbjct: 381 LGLGGDVIVSNSLLSMYARCLDFSSAMDVFHETHDRDVVTWNSILTACVQHQHLEDVFKL 440

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           F  + +S    DRI    VL+A +  G  +   +         +  +  +   ++D   +
Sbjct: 441 FSLLHRSMPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKVGLVGDAMLSNGLIDTYAK 500

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLL------GACKEHRLPNLGKLAALRVLDLKPNMM 516
            G + +A +L + M    D   W  L+      G  KE     L   A +R L +KPN +
Sbjct: 501 CGSLDDANKLFEIMGTGRDVFSWSSLIVGYAQFGYAKE----ALDLFARMRNLGVKPNHV 556

Query: 517 GTYIILSNIYAAEGKWEEFAKFRKIMR 543
            T++ +    +  G  +E   +  IM+
Sbjct: 557 -TFVGVLTACSRVGLVDEGCYYYSIMK 582



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 127/429 (29%), Positives = 216/429 (50%), Gaps = 14/429 (3%)

Query: 122 CKGMKSLSNAALVH-----GMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW 176
           C  ++SL    LVH       A    L  +  + N L+ +Y  C  + D+AR+VF+ M  
Sbjct: 52  CSRLRSLPQGRLVHRHLLASSARDRFLAHNTILSNHLITMYGRCG-APDSARVVFDGMLD 110

Query: 177 KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLI 236
           +N VSW  +I  +A +      +G+F  ML  G   + ++   A+ AC+  G +  G+ +
Sbjct: 111 RNPVSWAAVIAAHAQNSRCADAMGLFSSMLRSGTMPDQFALGSAICACSELGDLGLGRQV 170

Query: 237 HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS 296
           HA  IK   GS+L V N+++ MY +   + D    F+ + +KDLI+W +IIAG  + G  
Sbjct: 171 HAQAIKWESGSDLIVQNALVTMYSKSGSVGDGFALFERIRDKDLISWGSIIAGLAQQGRE 230

Query: 297 -ECLNMFSKMKSERF-SPNCFTFTSIIAACATLA-ALSCGQQVHAGIVRRGLDGNLALAN 353
            + L +F +M +E    PN F F S+  AC+ +  +L  G+Q+H   V+  LD N     
Sbjct: 231 MDALQIFREMIAEGVHHPNEFHFGSVFRACSVVVNSLEYGEQIHGVSVKYQLDRNSYAGC 290

Query: 354 ALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP 413
           +L DMYA+C  +  ++K+F  +   DLV+W S++  + A G   EA+ LF EM  SG+RP
Sbjct: 291 SLSDMYARCNELDSARKVFYRIESPDLVSWNSLINAFSAKGLLSEAMVLFSEMRDSGLRP 350

Query: 414 DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELI 473
           D I  MA+L AC     + +G      +    +  +  +   ++ +  R      A ++ 
Sbjct: 351 DGITVMALLCACVGYDALHQGRSIHSYLVKLGLGGDVIVSNSLLSMYARCLDFSSAMDVF 410

Query: 474 KSMPFKPDESVWGPLLGACKEHR-LPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKW 532
                + D   W  +L AC +H+ L ++ KL +L    + P++    I L+N+ +A  + 
Sbjct: 411 HETHDR-DVVTWNSILTACVQHQHLEDVFKLFSLLHRSM-PSL--DRISLNNVLSASAEL 466

Query: 533 EEFAKFRKI 541
             F   +++
Sbjct: 467 GYFEMVKQV 475


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 178/488 (36%), Positives = 287/488 (58%), Gaps = 2/488 (0%)

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMK 175
           +++LK C   K L+   +VHG  I+      + + N+L+++YA C  S++ AR VF+ M 
Sbjct: 55  NTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCG-SLEEARKVFDKMP 113

Query: 176 WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKL 235
            ++ V+WTTLI+GY+     +  L +F +ML  G   N ++ S  ++A A+      G  
Sbjct: 114 ERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGHQ 173

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSG 294
           +H   +K GF SN+ V +++LD+Y R+  + DA   FD +  ++ ++WN +IAG+  + G
Sbjct: 174 LHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCG 233

Query: 295 SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
           + + L +F  M  E F P+ F++ S+  AC++   L  G+ VHA +++ G        N 
Sbjct: 234 TEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNT 293

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
           L+DMYAK G+I D++KIF  ++ RD+V+W S++  Y  HG G EA+  F+EM + G+RP+
Sbjct: 294 LLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPN 353

Query: 415 RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
            I F++VLTACSH+GL+DEG  Y++ M    +      Y  +VDLLGRAG +  A   I+
Sbjct: 354 EISFLSVLTACSHSGLLDEGWHYYELMKKDGIVLEAWHYVTIVDLLGRAGDLNRALRFIE 413

Query: 475 SMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEE 534
            MP +P  ++W  LL AC+ H+   LG  AA  V +L P+  G ++IL NIYA+ G+W +
Sbjct: 414 EMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWND 473

Query: 535 FAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAY 594
            A+ RK M+  G KKE   SW+E+ + +  F+AND+     + +    E ++  + E  Y
Sbjct: 474 AARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGY 533

Query: 595 EPDIDCLI 602
            PD   +I
Sbjct: 534 VPDTSHVI 541



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 113/372 (30%), Positives = 198/372 (53%), Gaps = 22/372 (5%)

Query: 5   RLLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEE 64
           +LL+     H H I  I +  L                    ++   L+  Y   G +EE
Sbjct: 65  KLLTQGRIVHGHLIQSIFRHDL--------------------VMNNTLLNMYAKCGSLEE 104

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           AR +FD+MPERD V+WT +I+GY+  +    A  +F +M+R   +PN FTLSSV+KA   
Sbjct: 105 ARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAA 164

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTT 184
            +       +HG  +K G + +++V ++L+D+Y    + MD+A+LVF+ ++ +NDVSW  
Sbjct: 165 ERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGL-MDDAQLVFDALESRNDVSWNA 223

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG 244
           LI G+A        L +F+ ML EG   + +S++    AC+STG++  GK +HA +IK G
Sbjct: 224 LIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSG 283

Query: 245 FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFS 303
                   N++LDMY +   + DA + FD + ++D+++WN+++  Y + G  +E +  F 
Sbjct: 284 EKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFE 343

Query: 304 KMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG 363
           +M+     PN  +F S++ AC+    L  G   +  + + G+         ++D+  + G
Sbjct: 344 EMRRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVLEAWHYVTIVDLLGRAG 403

Query: 364 NISDSQKIFSEM 375
           +++ + +   EM
Sbjct: 404 DLNRALRFIEEM 415



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 176/326 (53%), Gaps = 14/326 (4%)

Query: 207 LEG--VEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264
           LEG  + ++   ++  ++ C     ++ G+++H  +I+  F  +L + N++L+MY +   
Sbjct: 42  LEGSYIPVDRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGS 101

Query: 265 LSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAA 323
           L +A + FD+M E+D +TW T+I+GY +     + L +F++M    FSPN FT +S+I A
Sbjct: 102 LEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKA 161

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTW 383
            A      CG Q+H   V+ G D N+ + +AL+D+Y + G + D+Q +F  +  R+ V+W
Sbjct: 162 AAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSW 221

Query: 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND 443
            +++ G+      ++A+ELF  M++ G RP    + ++  ACS  G +++G    K ++ 
Sbjct: 222 NALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQG----KWVHA 277

Query: 444 YNVNPNKEIYG----CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN 499
           Y +   +++       ++D+  ++G + +A ++   +  K D   W  LL A  +H   N
Sbjct: 278 YMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLA-KRDVVSWNSLLTAYAQHGFGN 336

Query: 500 --LGKLAALRVLDLKPNMMGTYIILS 523
             +     +R   ++PN +    +L+
Sbjct: 337 EAVCWFEEMRRGGIRPNEISFLSVLT 362


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 180/488 (36%), Positives = 285/488 (58%), Gaps = 2/488 (0%)

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMK 175
           +++LK C   K L    +VH   ++      I + N+L+++YA C  S++ AR VF  M 
Sbjct: 64  NTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCG-SLEEARKVFEKMP 122

Query: 176 WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKL 235
            ++ V+WTTLI+GY+        L  F +ML  G   N ++ S  ++A A+      G  
Sbjct: 123 QRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQ 182

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSG 294
           +H   +K GF SN+ V +++LD+Y R+  + DA   FD +  ++ ++WN +IAG+  +SG
Sbjct: 183 LHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSG 242

Query: 295 SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
           + + L +F  M  + F P+ F++ S+  AC++   L  G+ VHA +++ G        N 
Sbjct: 243 TEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNT 302

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
           L+DMYAK G+I D++KIF  ++ RD+V+W S++  Y  HG GKEA+  F+EM + G+RP+
Sbjct: 303 LLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPN 362

Query: 415 RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
            I F++VLTACSH+GL+DEG  Y++ M    + P    Y  VVDLLGRAG +  A   I+
Sbjct: 363 EISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIE 422

Query: 475 SMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEE 534
            MP +P  ++W  LL AC+ H+   LG  AA  V +L P+  G ++IL NIYA+ G+W +
Sbjct: 423 EMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWND 482

Query: 535 FAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAY 594
            A+ RK M+  G KKE   SW+E+ + +  F+AND+     + +    E ++  + E  Y
Sbjct: 483 AARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGY 542

Query: 595 EPDIDCLI 602
            PD   +I
Sbjct: 543 VPDTSHVI 550



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 103/330 (31%), Positives = 186/330 (56%), Gaps = 2/330 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++   L+  Y   G +EEAR +F++MP+RD V+WT +I+GY+  +    A   F +M+R 
Sbjct: 96  VMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRF 155

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
             +PN FTLSSV+KA    +       +HG  +K G + +++V ++L+D+Y    + MD+
Sbjct: 156 GYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGL-MDD 214

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A+LVF+ ++ +NDVSW  LI G+A        L +F+ ML +G   + +S++    AC+S
Sbjct: 215 AQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSS 274

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
           TG++  GK +HA +IK G        N++LDMY +   + DA + FD + ++D+++WN++
Sbjct: 275 TGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSL 334

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           +  Y + G   E +  F +M+     PN  +F S++ AC+    L  G   +  + + G+
Sbjct: 335 LTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGI 394

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEM 375
                    ++D+  + G+++ + +   EM
Sbjct: 395 VPEAWHYVTVVDLLGRAGDLNRALRFIEEM 424



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 171/317 (53%), Gaps = 18/317 (5%)

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
           ++  ++ C     +  G+++HA +++  F  ++ + N++L+MY +   L +A + F++M 
Sbjct: 63  YNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMP 122

Query: 277 EKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ 335
           ++D +TW T+I+GY +     + L  F++M    +SPN FT +S+I A A      CG Q
Sbjct: 123 QRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQ 182

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
           +H   V+ G D N+ + +AL+D+Y + G + D+Q +F  +  R+ V+W +++ G+     
Sbjct: 183 LHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSG 242

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG- 454
            ++A+ELF  M++ G RP    + ++  ACS  G +++G    K ++ Y +   +++   
Sbjct: 243 TEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQG----KWVHAYMIKSGEKLVAF 298

Query: 455 ---CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAA-----L 506
               ++D+  ++G + +A ++   +  K D   W  LL A  +H     GK A      +
Sbjct: 299 AGNTLLDMYAKSGSIHDARKIFDRLA-KRDVVSWNSLLTAYAQH---GFGKEAVWWFEEM 354

Query: 507 RVLDLKPNMMGTYIILS 523
           R + ++PN +    +L+
Sbjct: 355 RRVGIRPNEISFLSVLT 371


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 211/625 (33%), Positives = 331/625 (52%), Gaps = 49/625 (7%)

Query: 14  HCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSI--LATNLIKSYFDEGLIEEARTLFDE 71
           HCH  P        + +   ++S P  +   P    L  + ++       +  AR LFD+
Sbjct: 3   HCHHQP-------HAKRTMRLRSPPLQLHASPEFDFLERHDLRGCVRYRNLRAARLLFDQ 55

Query: 72  MPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM-VRNEVNPNAFTLSSVLKA-CKGMKSLS 129
           MPERDVVSW  M++GY       +A  +F EM  +N ++ N    + V     +  + L 
Sbjct: 56  MPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLF 115

Query: 130 NAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGY 189
            +     +     + G     N L+D           AR +F+ M  +++VSW T+I+GY
Sbjct: 116 ESKADWELISWNCMMGGYVKRNRLVD-----------ARGIFDRMPERDEVSWNTMISGY 164

Query: 190 AHSGNGYGGLGVFKE----------MLLEGVEMN-------------PYSFSIAVRACAS 226
           A +G       +F+E           ++ G   N             P   S++  A  +
Sbjct: 165 AQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIA 224

Query: 227 TGWVSFGKLIHAAVIKHGFG-SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
            G+V   ++  A  +       N+   N+++  Y +   ++ A  +FD M ++D I+W  
Sbjct: 225 -GYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAA 283

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           IIAGY +SG   E L++F +MK +    N  TFTS ++ CA +AAL  G+QVH  +V+ G
Sbjct: 284 IIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAG 343

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           L+    + NAL+ MY KCGNI D+  +F  + ++++V+W +M+ GY  HG GKEA+ LF+
Sbjct: 344 LESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFE 403

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRA 463
            M K+G+ PD +  + VL+ACSH GLVD+G +YF SM  DY +  N + Y C++DLLGRA
Sbjct: 404 SMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRA 463

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           GR+ +A  L+K+MPF+PD + WG LLGA + H    LG+ AA  + +++P+  G Y++LS
Sbjct: 464 GRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLS 523

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           N+YAA G+W +  + R  MR  G KK  G SW+EV++K+  F   D +      +Y  LE
Sbjct: 524 NLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLE 583

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGE 608
            L   M +  Y      ++HD+E E
Sbjct: 584 ELDLKMKKEGYVSSTKLVLHDVEEE 608


>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Vitis vinifera]
          Length = 590

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 190/524 (36%), Positives = 304/524 (58%), Gaps = 11/524 (2%)

Query: 69  FDEMPERDV----VSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           FD + + D+    + +  +IA Y S      A+ V+  +V N   P+ +T   VLKAC  
Sbjct: 58  FDFLNQTDLHVGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTK 117

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTT 184
              +     VHG+A+K G    +YV+NSL+  Y+ C      A  VF++M  ++ VSWT 
Sbjct: 118 FLGVQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCG-KWGGAGRVFDEMLVRDVVSWTG 176

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG 244
           LI+GY  +G     + +F +M    V  N  +F   + AC   G++S GK +H  V K  
Sbjct: 177 LISGYVRTGLFDEAINLFLKM---DVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRA 233

Query: 245 FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFS 303
           FG  L V N+++DMY + +CL +A + FDE+ ++D+++W +II+G  +     + L +F 
Sbjct: 234 FGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFY 293

Query: 304 KMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG 363
            M+     P+    TS+++ACA+L AL  G+ V   I R+G++ ++ +  AL+DMYAKCG
Sbjct: 294 DMQISGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCG 353

Query: 364 NISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLT 423
            I  +  IF+ + +R++ TW +++ G   HGHG EA++ F+ M+ +G+RP+ + F+A+LT
Sbjct: 354 CIEMALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILT 413

Query: 424 ACSHAGLVDEGLKYFKSM--NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481
           AC H+GLV EG  YF  M    +N +P  E YGC++DLL RAG + EAY+ I++MP  PD
Sbjct: 414 ACCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPD 473

Query: 482 ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKI 541
             +WG LL ACK +    L +     +L+LK    G Y++LSNIYA   +W++  + R++
Sbjct: 474 VLIWGALLSACKANGNVELSQEILSHLLELKSQDSGVYVLLSNIYATNERWDDVTRVRRL 533

Query: 542 MRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           M+  G +K  G S IEV  +   F+  D   S  + ++ +L +L
Sbjct: 534 MKDKGIRKFPGSSVIEVDGEAHEFLVGDTNHSRNEDIHILLNIL 577



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 178/349 (51%), Gaps = 10/349 (2%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           A  +FDEM  RDVVSWT +I+GY      ++A  +F++M   +V PN  T  SVL AC  
Sbjct: 159 AGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFLKM---DVVPNVATFVSVLVACGR 215

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNARLVFNDMKWKNDVSWT 183
           M  LS    VHG+  K      + V N+L+D+Y  C C+    AR +F+++  ++ VSWT
Sbjct: 216 MGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLC--EARKLFDELPDRDIVSWT 273

Query: 184 TLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH 243
           ++I+G          L +F +M + GVE +    +  + ACAS G + +G+ +   + + 
Sbjct: 274 SIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQ 333

Query: 244 GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMF 302
           G   ++ +  +++DMY +  C+  A   F+ +  +++ TWN ++ G    G   E L  F
Sbjct: 334 GIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHF 393

Query: 303 SKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN--ALIDMYA 360
             M      PN  TF +I+ AC     ++ G+     ++ +  + +  L +   +ID+  
Sbjct: 394 ELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLC 453

Query: 361 KCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           + G + ++ K    M    D++ W +++    A+G+ + + E+   +++
Sbjct: 454 RAGLLDEAYKFIRNMPLPPDVLIWGALLSACKANGNVELSQEILSHLLE 502



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 137/270 (50%), Gaps = 10/270 (3%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++   L+  Y     + EAR LFDE+P+RD+VSWT +I+G         +  +F +M  +
Sbjct: 239 VVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQIS 298

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMD 165
            V P+   L+SVL AC  + +L     V     ++G+E  I++  +L+D+YA C CI M 
Sbjct: 299 GVEPDRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEM- 357

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A  +FN +  +N  +W  L+ G A  G+G+  L  F+ M+  G+  N  +F   + AC 
Sbjct: 358 -ALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACC 416

Query: 226 STGWVSFGKLIHAAVIKH--GFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLIT 282
            +G V+ G+     +I     F   L     ++D+ CR   L +A ++   M    D++ 
Sbjct: 417 HSGLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPDVLI 476

Query: 283 WNTIIAGYEKSG----SSECLNMFSKMKSE 308
           W  +++  + +G    S E L+   ++KS+
Sbjct: 477 WGALLSACKANGNVELSQEILSHLLELKSQ 506


>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1495

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 187/493 (37%), Positives = 295/493 (59%), Gaps = 8/493 (1%)

Query: 124 GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS---MDNARLVFNDM-KWKND 179
           G+ S++    +H  +I+ G+  S       +  Y     S   M  A  VF+ + K  N 
Sbjct: 26  GVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINV 85

Query: 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEG-VEMNPYSFSIAVRACASTGWVSFGKLIHA 238
             W TLI GYA  GN      +++EM + G VE + +++   ++A  +   V  G+ IH+
Sbjct: 86  FIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHS 145

Query: 239 AVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SE 297
            VI+ GFGS + V NS+L +Y     ++ A + FD+M EKDL+ WN++I G+ ++G   E
Sbjct: 146 VVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEE 205

Query: 298 CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALID 357
            L ++++M S+   P+ FT  S+++ACA + AL+ G++VH  +++ GL  NL  +N L+D
Sbjct: 206 ALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLD 265

Query: 358 MYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS-GVRPDRI 416
           +YA+CG + +++ +F EM D++ V+WTS+++G   +G GKEAIELF  M  + G+ P  I
Sbjct: 266 LYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEI 325

Query: 417 VFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKS 475
            F+ +L ACSH G+V EG +YF+ M + Y + P  E +GC+VDLL RAG+VK+AYE IKS
Sbjct: 326 TFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKS 385

Query: 476 MPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEF 535
           MP +P+  +W  LLGAC  H   +L + A +++L L+PN  G Y++LSN+YA+E +W + 
Sbjct: 386 MPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDV 445

Query: 536 AKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYE 595
            K RK M   G KK  G S +EV ++V  F+  DK    +  +Y  L+ +   +    Y 
Sbjct: 446 QKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYV 505

Query: 596 PDIDCLIHDLEGE 608
           P I  +  D+E E
Sbjct: 506 PQISNVYVDVEEE 518



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 163/335 (48%), Gaps = 28/335 (8%)

Query: 76  DVVSWTVMIAGYTSFNCHNQAWTVFVEM-VRNEVNPNAFTLSSVLKACKGMKSLSNAALV 134
           +V  W  +I GY        A++++ EM V   V P+  T   ++KA   M  +     +
Sbjct: 84  NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETI 143

Query: 135 HGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGN 194
           H + I+ G    IYV+NSL+ +YA C   + +A  VF+ M  K+ V+W ++I G+A +G 
Sbjct: 144 HSVVIRSGFGSLIYVQNSLLHLYANCG-DVASAYKVFDKMPEKDLVAWNSVINGFAENGK 202

Query: 195 GYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNS 254
               L ++ EM  +G++ + ++    + ACA  G ++ GK +H  +IK G   NL   N 
Sbjct: 203 PEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNV 262

Query: 255 ILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKS-ERFSP 312
           +LD+Y R   + +A   FDEM +K+ ++W ++I G   +G   E + +F  M+S E   P
Sbjct: 263 LLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLP 322

Query: 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRG------------LDGNLALANALIDMYA 360
              TF  I+ AC+           H G+V+ G            ++  +     ++D+ A
Sbjct: 323 CEITFVGILYACS-----------HCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLA 371

Query: 361 KCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHG 394
           + G +  + +    M    ++V W +++     HG
Sbjct: 372 RAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHG 406



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 138/269 (51%), Gaps = 5/269 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +  +L+  Y + G +  A  +FD+MPE+D+V+W  +I G+       +A  ++ EM    
Sbjct: 158 VQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKG 217

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + P+ FT+ S+L AC  + +L+    VH   IK GL  +++  N L+D+YA C   ++ A
Sbjct: 218 IKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCG-RVEEA 276

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEM-LLEGVEMNPYSFSIAVRACAS 226
           + +F++M  KN VSWT+LI G A +G G   + +FK M   EG+     +F   + AC+ 
Sbjct: 277 KTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSH 336

Query: 227 TGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLITWN 284
            G V  G +       ++     +     ++D+  R   +  A +Y   M  + +++ W 
Sbjct: 337 CGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWR 396

Query: 285 TIIAGYEKSGSSECLNMFSKMKSERFSPN 313
           T++      G S+ L  F++++  +  PN
Sbjct: 397 TLLGACTVHGDSD-LAEFARIQILQLEPN 424


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 200/600 (33%), Positives = 326/600 (54%), Gaps = 40/600 (6%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +L   ++  +FD   +  A ++F+ + E +++ W  M+ G+ S +    A  ++V MV  
Sbjct: 1   LLELCVVSPHFDG--LPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSL 58

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA-------- 158
              PN+++   +LK+C   K+      +H   +K G     YV  SL+ +YA        
Sbjct: 59  GHLPNSYSFPFLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDA 118

Query: 159 ------------TCCISM----------DNARLVFNDMKWKNDVSWTTLITGYAHSGNGY 196
                         C ++           +AR VF+++  ++ VSW  +ITGY  +G   
Sbjct: 119 RKVFDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYE 178

Query: 197 GGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIK----HGFGSNLPVM 252
             L +FKEM+   V  +  +    V ACA +G +  G+ +H+ V      HGF S+L ++
Sbjct: 179 EALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIV 238

Query: 253 NSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFS 311
           N+++D+Y +   +  A   F+ ++ KD+++WNT+I GY  +    E L +F +M      
Sbjct: 239 NALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGEC 298

Query: 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRR--GLDGNLALANALIDMYAKCGNISDSQ 369
           PN  T  S++ ACA L A+  G+ +H  I ++  G+    +L  +LIDMYAKCG+I  + 
Sbjct: 299 PNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAH 358

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
           ++F+ M  R L +W +M+ G+  HG    A +LF  M  + V PD I F+ +L+ACSH+G
Sbjct: 359 QVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSG 418

Query: 430 LVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPL 488
           L+D G + FKSM  DYN+ P  E YGC++DLLG +G  KEA E+I +MP +PD  +W  L
Sbjct: 419 LLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSL 478

Query: 489 LGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSK 548
           L ACK+H    L +  A +++ ++P   G+Y++LSNIYA  G+WE+ A+ R ++ G G K
Sbjct: 479 LKACKKHGNLELAESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMK 538

Query: 549 KEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           K  G S IEV   V  FI  DK+    + +Y +LE +   + E  + PD   ++ ++E E
Sbjct: 539 KVPGCSSIEVDSVVHEFIIGDKLHPRRREIYHMLEEMDVQLEEAGFAPDTSEVLQEMEEE 598


>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 861

 Score =  358 bits (919), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 186/564 (32%), Positives = 331/564 (58%), Gaps = 28/564 (4%)

Query: 62  IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121
           +++A+ LFD+    +  S+  MI GY+      +A  +F  ++ + +  +  +LS V +A
Sbjct: 290 MQDAQILFDKSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRA 349

Query: 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS 181
           C  +K LS    ++ +AIK  L   + V N+ +D+Y  C  ++  A  VF++M+ ++ VS
Sbjct: 350 CALVKGLSEGLQIYDLAIKSSLSLDVCVANAAIDMYGKC-QALAEAFRVFDEMRRRDAVS 408

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           W  +I  +  +G GY  L +F  ML   +E + ++F   ++AC + G + +G  IH++++
Sbjct: 409 WNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSVLKAC-TGGSLGYGMEIHSSIV 467

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDA----NQYF------------DEMTEKDL----I 281
           K G  SN  V  S++DMY +   + +A    +++F            ++M  K L    +
Sbjct: 468 KSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRTNVSGTMEELEKMHNKRLQEMCV 527

Query: 282 TWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           +WN+II+GY  K  S +   +F++M     +P+ FT+ +++  CA LA+   G+Q+HA +
Sbjct: 528 SWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQV 587

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           +++ L  ++ +++ L+DMY+KCG++ DS+ +F +   RD VTW +M+ GY  HG G+EAI
Sbjct: 588 IKKELQSDVYISSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAI 647

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDL 459
           +LF+ M+   ++P+ + F+++L AC+H GL+D+GL+YF  M  DY ++P    Y  +VD+
Sbjct: 648 QLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDI 707

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLP-NLGKLAALRVLDLKPNMMGT 518
           LG++G+VK A ELI+ MPF+ D+ +W  LLG C  HR    + + A   +L L P     
Sbjct: 708 LGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSA 767

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
           Y +LSN+YA  G WE+ +  R+ MRG   KKE G SW+E++D++  F+  DK     + +
Sbjct: 768 YTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWEEI 827

Query: 579 YGVLEMLIRHM---NETAYEPDID 599
           Y  L ++   M   +++++ P ++
Sbjct: 828 YEELGLIYSEMKPFDDSSFVPGVE 851



 Score =  212 bits (539), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 131/470 (27%), Positives = 229/470 (48%), Gaps = 24/470 (5%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           + A+ L+  Y       E+  +F  +PE++ VSW+ +IAG    N  + A   F EM + 
Sbjct: 174 VAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKV 233

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
               +    +SVL++C  +  L     +H  A+K        V  + +D+YA  C +M +
Sbjct: 234 NAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAK-CDNMQD 292

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A+++F+  +  N  S+  +ITGY+   +G+  L +F  ++  G+  +  S S   RACA 
Sbjct: 293 AQILFDKSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACAL 352

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +S G  I+   IK     ++ V N+ +DMY +   L++A + FDEM  +D ++WN I
Sbjct: 353 VKGLSEGLQIYDLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAI 412

Query: 287 IAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           IA +E++G   E L +F  M   R  P+ FTF S++ AC T  +L  G ++H+ IV+ G+
Sbjct: 413 IAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSVLKAC-TGGSLGYGMEIHSSIVKSGM 471

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRD--------------------LVTWTS 385
             N ++  +LIDMY+KCG I +++KI S    R                      V+W S
Sbjct: 472 ASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRTNVSGTMEELEKMHNKRLQEMCVSWNS 531

Query: 386 MMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYN 445
           ++ GY      ++A  LF  M++ G+ PD+  +  VL  C++      G +    +    
Sbjct: 532 IISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKE 591

Query: 446 VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           +  +  I   +VD+  + G + ++  L+     + D   W  ++     H
Sbjct: 592 LQSDVYISSTLVDMYSKCGDLHDS-RLMFEKSLRRDFVTWNAMICGYAHH 640



 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 122/429 (28%), Positives = 222/429 (51%), Gaps = 4/429 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           +I  Y     + +A   F+ MP RDVVSW  M++GY       ++  VFV+M R     +
Sbjct: 78  MINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTEFD 137

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
             T + +LK C  ++  S    +HG+ ++ G +  +   ++L+D+YA     +++ R VF
Sbjct: 138 GRTFAIILKVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVESLR-VF 196

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
             +  KN VSW+ +I G   +      L  FKEM      ++   ++  +R+CA+   + 
Sbjct: 197 QGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELR 256

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY- 290
            G  +HA  +K  F ++  V  + LDMY + D + DA   FD+    +  ++N +I GY 
Sbjct: 257 LGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDKSENLNRQSYNAMITGYS 316

Query: 291 EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           ++    + L +F ++ S     +  + + +  ACA +  LS G Q++   ++  L  ++ 
Sbjct: 317 QEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYDLAIKSSLSLDVC 376

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           +ANA IDMY KC  ++++ ++F EM  RD V+W +++  +  +G G E + LF  M++S 
Sbjct: 377 VANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSR 436

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470
           + PD   F +VL AC+  G +  G++   S+    +  N  +   ++D+  + G ++EA 
Sbjct: 437 IEPDEFTFGSVLKACT-GGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEA- 494

Query: 471 ELIKSMPFK 479
           E I S  F+
Sbjct: 495 EKIHSRFFQ 503



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 98/395 (24%), Positives = 199/395 (50%), Gaps = 9/395 (2%)

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHG-MAIKEGLEGSIYVENSLMDVYATCC 161
           M+ +   P  F L+ +L+     +   +A++V   M +++     +   N +++ YA   
Sbjct: 32  MILSGFRPTTFVLNCLLQVYTNSRDFVSASMVFDRMPLRD-----VVSWNKMINGYAKSN 86

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
            +M  A   FN M  ++ VSW ++++GY  +G     + VF +M   G E +  +F+I +
Sbjct: 87  -NMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTEFDGRTFAIIL 145

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
           + C+     S G  IH  V++ G  +++   +++LDMY +     ++ + F  + EK+ +
Sbjct: 146 KVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSV 205

Query: 282 TWNTIIAG-YEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           +W+ IIAG  + +  S  L  F +M+      +   + S++ +CA L+ L  G Q+HA  
Sbjct: 206 SWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHA 265

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           ++     +  +  A +DMYAKC N+ D+Q +F +  + +  ++ +M+ GY    HG +A+
Sbjct: 266 LKSDFAADGIVRTATLDMYAKCDNMQDAQILFDKSENLNRQSYNAMITGYSQEEHGFKAL 325

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLL 460
            LF  ++ SG+  D I    V  AC+    + EGL+ +      +++ +  +    +D+ 
Sbjct: 326 LLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYDLAIKSSLSLDVCVANAAIDMY 385

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           G+   + EA+ +   M  + D   W  ++ A +++
Sbjct: 386 GKCQALAEAFRVFDEMR-RRDAVSWNAIIAAHEQN 419



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 125/264 (47%), Gaps = 23/264 (8%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERD--------------------VVSWTVMIA 85
           S +  +LI  Y   G+IEEA  +     +R                      VSW  +I+
Sbjct: 475 SSVGCSLIDMYSKCGMIEEAEKIHSRFFQRTNVSGTMEELEKMHNKRLQEMCVSWNSIIS 534

Query: 86  GYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEG 145
           GY        A  +F  M+   + P+ FT ++VL  C  + S      +H   IK+ L+ 
Sbjct: 535 GYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQS 594

Query: 146 SIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEM 205
            +Y+ ++L+D+Y+ C   + ++RL+F     ++ V+W  +I GYAH G G   + +F+ M
Sbjct: 595 DVYISSTLVDMYSKCG-DLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERM 653

Query: 206 LLEGVEMNPYSFSIAVRACASTGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264
           +LE ++ N  +F   +RACA  G +  G +  +     +G    LP  ++++D+  +   
Sbjct: 654 ILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGK 713

Query: 265 LSDANQYFDEMT-EKDLITWNTII 287
           +  A +   EM  E D + W T++
Sbjct: 714 VKRALELIREMPFEADDVIWRTLL 737



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 107/235 (45%), Gaps = 32/235 (13%)

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           CA  G +  GK  HA +I  GF     V+N +L +Y        A+  FD M  +D+++W
Sbjct: 16  CAKQGALELGKQAHAHMILSGFRPTTFVLNCLLQVYTNSRDFVSASMVFDRMPLRDVVSW 75

Query: 284 NTIIAGYEKSG--------------------------------SSECLNMFSKMKSERFS 311
           N +I GY KS                                 + + + +F  M      
Sbjct: 76  NKMINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTE 135

Query: 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKI 371
            +  TF  I+  C+ L   S G Q+H  +VR G D ++  A+AL+DMYAK     +S ++
Sbjct: 136 FDGRTFAIILKVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVESLRV 195

Query: 372 FSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS 426
           F  + +++ V+W++++ G   +     A++ F EM K      + ++ +VL +C+
Sbjct: 196 FQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCA 250


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  358 bits (919), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 199/597 (33%), Positives = 332/597 (55%), Gaps = 36/597 (6%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
            ++  +++  +FD   +  A ++F+ + E +++ W  M  G+   +    A  ++V M+ 
Sbjct: 1   QLIEFSVLSPHFDG--LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMIS 58

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA------- 158
             + PN+++   +LK+C   K+L     +HG  +K G +  +YV  SL+ +YA       
Sbjct: 59  LGLLPNSYSFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLED 118

Query: 159 ----------------TCCIS-------MDNARLVFNDMKWKNDVSWTTLITGYAHSGNG 195
                           T  I+       ++NAR +F+++  K+ VSW  +I+GY  + N 
Sbjct: 119 AHKVFDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNF 178

Query: 196 YGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSI 255
              L ++K+M+   V+ +  +    V ACA +G +  G+ +H+ +  HGFGSN+ ++N +
Sbjct: 179 KEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVL 238

Query: 256 LDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNC 314
           +D+Y +   +  A   F  + +KD+I+WNT+I G+       E L +F +M     SPN 
Sbjct: 239 IDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPND 298

Query: 315 FTFTSIIAACATLAALSCGQQVHAGIVRR--GLDGNLALANALIDMYAKCGNISDSQKIF 372
            T  S++ ACA L A+  G+ +H  I +R  G+    +L  +LIDMYAKCG+I  ++++F
Sbjct: 299 VTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVF 358

Query: 373 SEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD 432
             M  R L +W +M+ G+  HG    A +LF +M K+G+ PD I F+ +L+ACSH+G++D
Sbjct: 359 DSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLD 418

Query: 433 EGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
            G   F+SM+ DY + P  E YGC++DLLG  G  KEA E+I++MP +PD  +W  LL A
Sbjct: 419 LGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKA 478

Query: 492 CKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEV 551
           CK H    LG+  A  ++ ++P   G+Y++LSNIYA  G+W++ AK R ++   G KK  
Sbjct: 479 CKMHNNVELGESYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAP 538

Query: 552 GMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           G S IE+   V  FI  DK     + +Y +LE +   M ET + PD   ++ ++E E
Sbjct: 539 GCSSIEIDSVVHEFIIGDKFHPRNREIYRMLEEMEMLMEETGFVPDTSEVLQEMEEE 595


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  358 bits (919), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 183/497 (36%), Positives = 293/497 (58%), Gaps = 7/497 (1%)

Query: 117 SVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNARLVFNDMK 175
           ++L  C   +++     VH   IK     S+Y+   L+ +Y  C C+   +AR +F++M 
Sbjct: 95  TILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLG--DAREMFDEMP 152

Query: 176 WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKL 235
            KN VSWT +I+ Y+  G  +  L +F EML    E N ++F+  + +C  +     G+ 
Sbjct: 153 QKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQ 212

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG- 294
           IH+  IK  + S++ V +S+LDMY +   + DA+  F  + E+D++    II+GY + G 
Sbjct: 213 IHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGL 272

Query: 295 SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
             E L +F +++ E  + N  T+ S++ A + LAAL+ G+QVH+ ++R G    + L N+
Sbjct: 273 DEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNS 332

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG-VRP 413
           LIDMY+KCGN+  +++IF  M +R  ++W +M++GY  HG  +E +ELF  M +   V+P
Sbjct: 333 LIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKP 392

Query: 414 DRIVFMAVLTACSHAGLVDEGLKYFKSM--NDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471
           D I ++AVL+ CSH  L D GL+ F +M      + P+   YGCVVDLLGRAGRV+EA++
Sbjct: 393 DSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFD 452

Query: 472 LIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK 531
            IK MPF P  ++WG LLG+C+ H    +G +   ++L+L+P   G Y+ILSN+YA+ GK
Sbjct: 453 FIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGK 512

Query: 532 WEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNE 591
           WE+    R +M+     KE G SW+E+   V  F A+D      + V   ++ L     E
Sbjct: 513 WEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVAKKVKELSIKFKE 572

Query: 592 TAYEPDIDCLIHDLEGE 608
             Y PD+ C+++D++ E
Sbjct: 573 DGYVPDLSCVLYDVDEE 589



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 100/336 (29%), Positives = 188/336 (55%), Gaps = 6/336 (1%)

Query: 45  PSI-LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           PS+ L T LI  Y     + +AR +FDEMP+++VVSWT MI+ Y+      +A  +FVEM
Sbjct: 123 PSVYLRTRLIVLYNKCDCLGDAREMFDEMPQKNVVSWTAMISAYSQRGFAFEALNLFVEM 182

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           +R++  PN FT +++L +C G         +H +AIK   E  ++V +SL+D+YA     
Sbjct: 183 LRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRI 242

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
            D A  VF+ +  ++ V+ T +I+GYA  G     L +F+++ +EG+  N  +++  + A
Sbjct: 243 CD-AHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTA 301

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
            +    ++ GK +H+ V++ G  S + ++NS++DMY +   +  A + FD M E+  I+W
Sbjct: 302 LSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISW 361

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSE-RFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           N ++ GY K G + E L +F  M+ E +  P+  T+ ++++ C+       G ++   +V
Sbjct: 362 NAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMV 421

Query: 342 --RRGLDGNLALANALIDMYAKCGNISDSQKIFSEM 375
             + G++ ++     ++D+  + G + ++     +M
Sbjct: 422 NGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKM 457



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 161/305 (52%), Gaps = 14/305 (4%)

Query: 200 GVFKEMLLE----GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSI 255
           G  KE LL+    G E+    +   +  C S   +  G+ +H  +IK  +  ++ +   +
Sbjct: 72  GQLKEALLQMAILGREVKFEGYDTILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRL 131

Query: 256 LDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNC 314
           + +Y + DCL DA + FDEM +K++++W  +I+ Y + G + E LN+F +M      PN 
Sbjct: 132 IVLYNKCDCLGDAREMFDEMPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNH 191

Query: 315 FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSE 374
           FTF +I+ +C        G+Q+H+  ++R  + ++ + ++L+DMYAK G I D+  +F  
Sbjct: 192 FTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHC 251

Query: 375 MSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434
           + +RD+V  T+++ GY   G  +EA++LF ++   G+  + + + +VLTA S    ++ G
Sbjct: 252 LPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHG 311

Query: 435 LKYFKSMNDYNVNPNKEIY----GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490
               K ++ + +   +  Y      ++D+  + G V  A  +  SMP +   S W  +L 
Sbjct: 312 ----KQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCIS-WNAMLV 366

Query: 491 ACKEH 495
              +H
Sbjct: 367 GYSKH 371


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  358 bits (919), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 180/488 (36%), Positives = 285/488 (58%), Gaps = 2/488 (0%)

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMK 175
           +++LK C   K L    +VH   ++      I + N+L+++YA C  S++ AR VF  M 
Sbjct: 64  NTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCG-SLEEARKVFEKMP 122

Query: 176 WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKL 235
            ++ V+WTTLI+GY+        L  F +ML  G   N ++ S  ++A A+      G  
Sbjct: 123 QRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQ 182

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSG 294
           +H   +K GF SN+ V +++LD+Y R+  + DA   FD +  ++ ++WN +IAG+  +SG
Sbjct: 183 LHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSG 242

Query: 295 SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
           + + L +F  M  + F P+ F++ S+  AC++   L  G+ VHA +++ G        N 
Sbjct: 243 TEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNT 302

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
           L+DMYAK G+I D++KIF  ++ RD+V+W S++  Y  HG GKEA+  F+EM + G+RP+
Sbjct: 303 LLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPN 362

Query: 415 RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
            I F++VLTACSH+GL+DEG  Y++ M    + P    Y  VVDLLGRAG +  A   I+
Sbjct: 363 EISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIE 422

Query: 475 SMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEE 534
            MP +P  ++W  LL AC+ H+   LG  AA  V +L P+  G ++IL NIYA+ G+W +
Sbjct: 423 EMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWND 482

Query: 535 FAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAY 594
            A+ RK M+  G KKE   SW+E+ + +  F+AND+     + +    E ++  + E  Y
Sbjct: 483 AARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGY 542

Query: 595 EPDIDCLI 602
            PD   +I
Sbjct: 543 VPDTSHVI 550



 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 103/330 (31%), Positives = 186/330 (56%), Gaps = 2/330 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++   L+  Y   G +EEAR +F++MP+RD V+WT +I+GY+  +    A   F +M+R 
Sbjct: 96  VMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRF 155

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
             +PN FTLSSV+KA    +       +HG  +K G + +++V ++L+D+Y    + MD+
Sbjct: 156 GYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGL-MDD 214

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A+LVF+ ++ +NDVSW  LI G+A        L +F+ ML +G   + +S++    AC+S
Sbjct: 215 AQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSS 274

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
           TG++  GK +HA +IK G        N++LDMY +   + DA + FD + ++D+++WN++
Sbjct: 275 TGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSL 334

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           +  Y + G   E +  F +M+     PN  +F S++ AC+    L  G   +  + + G+
Sbjct: 335 LTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGI 394

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEM 375
                    ++D+  + G+++ + +   EM
Sbjct: 395 VPEAWHYVTVVDLLGRAGDLNRALRFIEEM 424



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 171/317 (53%), Gaps = 18/317 (5%)

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
           ++  ++ C     +  G+++HA +++  F  ++ + N++L+MY +   L +A + F++M 
Sbjct: 63  YNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMP 122

Query: 277 EKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ 335
           ++D +TW T+I+GY +     + L  F++M    +SPN FT +S+I A A      CG Q
Sbjct: 123 QRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQ 182

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
           +H   V+ G D N+ + +AL+D+Y + G + D+Q +F  +  R+ V+W +++ G+     
Sbjct: 183 LHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSG 242

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG- 454
            ++A+ELF  M++ G RP    + ++  ACS  G +++G    K ++ Y +   +++   
Sbjct: 243 TEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQG----KWVHAYMIKSGEKLVAF 298

Query: 455 ---CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAA-----L 506
               ++D+  ++G + +A ++   +  K D   W  LL A  +H     GK A      +
Sbjct: 299 AGNTLLDMYAKSGSIHDARKIFDRLA-KRDVVSWNSLLTAYAQH---GFGKEAVWWFEEM 354

Query: 507 RVLDLKPNMMGTYIILS 523
           R + ++PN +    +L+
Sbjct: 355 RRVGIRPNEISFLSVLT 371


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 201/607 (33%), Positives = 321/607 (52%), Gaps = 47/607 (7%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHN--QAWT 98
           IP   +     L+ +Y   G  +EAR LF+ +P+ D  S+  ++A        +   A  
Sbjct: 78  IPLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALR 137

Query: 99  VFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA 158
               M  ++   NA++ +S L AC   K L     VHG+  +      +++  +L+D+YA
Sbjct: 138 FLAAMHADDFVLNAYSFASALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYA 197

Query: 159 TCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFS 218
            C   +D AR VF+ M  +N VSW +LIT Y  +G     L +F EM+  G   +  + S
Sbjct: 198 KCERPVD-ARRVFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLS 256

Query: 219 IAVRACASTGWVSFGKLIHAAVIKHG-FGSNLPVMNSILDMY----------CRFDCL-- 265
             + ACA       G+ +HA ++K      ++ + N+++DMY          C FD +  
Sbjct: 257 SVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPS 316

Query: 266 -------------------SDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKM 305
                               DA   F +M EK++I WN +IA Y ++G  E  + +F ++
Sbjct: 317 RSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQL 376

Query: 306 KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL------DGNLALANALIDMY 359
           K +   P  +T+ +++ AC  +A L  GQQ H  +++ G       + ++ + N+L+DMY
Sbjct: 377 KRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMY 436

Query: 360 AKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFM 419
            K G+I D  K+F  M+ RD V+W +M++GY  +G  K+A+ LF+ M+ S   PD +  +
Sbjct: 437 LKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMI 496

Query: 420 AVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPF 478
            VL+AC H+GLVDEG ++F  M  D+ + P+++ Y C+VDLLGRAG +KEA ELIK MP 
Sbjct: 497 GVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPT 556

Query: 479 KPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKF 538
           +PD  +W  LLGAC+ H+   LG+  A R+ +L P   G Y++LSN+YA  GKW +  + 
Sbjct: 557 EPDSVLWASLLGACRLHKNVELGERTAGRLFELDPENSGPYVLLSNMYAEMGKWADVFRV 616

Query: 539 RKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDI 598
           R+ M+  G  K+ G SWIE+  K+  F+A D        ++  L ++   M  T+    I
Sbjct: 617 RRSMKDRGVSKQPGCSWIEIGSKMNVFLARDNRHPCRNEIHSTLRIIQMEMCRTS----I 672

Query: 599 DCLIHDL 605
           D +  DL
Sbjct: 673 DGIDDDL 679



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 41/192 (21%), Positives = 84/192 (43%), Gaps = 17/192 (8%)

Query: 329 ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMI 388
           +L   +  H  +++  + G   L N L+  YA+ G + +++++F  +  R+  ++ +++ 
Sbjct: 32  SLPGARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLS 91

Query: 389 GYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG--LKYFKSM--NDY 444
            Y   G   EA  LF+ +      PD+  + AV+ A +  G    G  L++  +M  +D+
Sbjct: 92  AYARLGRPDEARALFEAIPD----PDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDF 147

Query: 445 NVNP---NKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLG 501
            +N       +  C  +   R G  ++ + L+   P   D  +   L+    +   P   
Sbjct: 148 VLNAYSFASALSACAAEKDLRTG--EQVHGLVARSPHADDVHIGTALVDMYAKCERP--- 202

Query: 502 KLAALRVLDLKP 513
            + A RV D  P
Sbjct: 203 -VDARRVFDAMP 213


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 189/565 (33%), Positives = 321/565 (56%), Gaps = 4/565 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +++ +L+ SY     +  A  LF+++PERD V++  ++ GY+    + +A  +F +M   
Sbjct: 234 VVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEV 293

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
              P  FT +++L A   +  +     VHG  +K     +++V N+L+D Y+     ++ 
Sbjct: 294 GYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEA 353

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           ++L F +M   + +S+  L+T YA +G     L +FKE+   G +   + F+  +   A 
Sbjct: 354 SKL-FYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAI 412

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
           +  +  G+ IH+  I     S + V NS++DMY +     +AN+ F ++  +  + W  +
Sbjct: 413 SLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAM 472

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+ Y + G  E  L +F +M+  +   +  T+ SI+ ACA+LA+L+ G+Q+H+ I+  G 
Sbjct: 473 ISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACASLASLTLGKQLHSHIIGSGY 532

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             N+   +AL+DMYAKCG+I D+ ++F EM  R+ V+W +++  Y  +G G   + LF+E
Sbjct: 533 ISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVSWNALISAYAQNGDGDCTLRLFEE 592

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAG 464
           MV+SG++PD +  +++L ACSH GLV+EGL+YF SM   Y + P KE Y   +D+L R G
Sbjct: 593 MVRSGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMTRIYKLVPKKEHYASTIDMLCRGG 652

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP-NMMGTYIILS 523
           R  EA +L+  MPF+PDE +W  +L +C  H+   L K AA ++ ++K       Y+ +S
Sbjct: 653 RFDEAEKLMAQMPFEPDEIMWSSVLNSCGIHKNQELAKKAANQLFNMKVLRDAAPYVTMS 712

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           NIYAA G+W+   K +K MR  G KK    SW+E++ K   F ANDK     + +   L+
Sbjct: 713 NIYAAAGEWDNVGKVKKAMRERGVKKVPAYSWVEIKHKTHVFTANDKTHPQMREIMKKLD 772

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGE 608
            L   M +  Y+PD  C +H+++ E
Sbjct: 773 ELEEKMVKKGYKPDSSCALHNVDEE 797



 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 130/448 (29%), Positives = 239/448 (53%), Gaps = 4/448 (0%)

Query: 46  SILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
           +I +TN +I  Y   G + EARTLFD M +R  V+WT++I GY   N   +A+ +F+EM 
Sbjct: 131 NIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMG 190

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
           R+ ++P+  +L+++L       S++    VH   IK G + ++ V NSL+D Y     S+
Sbjct: 191 RHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCK-TRSL 249

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
             A  +FND+  ++ V++  L+TGY+  G     + +F +M   G     ++F+  + A 
Sbjct: 250 GLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAG 309

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
                + FG+ +H  V+K  F  N+ V N++LD Y + D + +A++ F EM E D I++N
Sbjct: 310 IQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYN 369

Query: 285 TIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            ++  Y  +G   E L +F +++   F    F F ++++  A    L  G+Q+H+  +  
Sbjct: 370 VLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVT 429

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
                + + N+L+DMYAKCG   ++ +IFS+++ +  V WT+M+  Y   G  ++ ++LF
Sbjct: 430 DAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLF 489

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
            EM ++ +  D   + +++ AC+    +  G +    +       N      +VD+  + 
Sbjct: 490 VEMQRAKIGADAATYASIVRACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKC 549

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGA 491
           G +K+A ++ + MP +   S W  L+ A
Sbjct: 550 GSIKDALQMFQEMPVRNSVS-WNALISA 576



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 190/378 (50%), Gaps = 6/378 (1%)

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           +++   NPN +  + ++K+      L+ A  +      E    +I+  N+++  Y     
Sbjct: 92  IIKTGFNPNTYRSNFLVKSFLQRGDLNGARKL----FDEMPHKNIFSTNTMIMGYIKSG- 146

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
           ++  AR +F+ M  +  V+WT LI GYA +       G+F EM   G++ +  S +  + 
Sbjct: 147 NLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLS 206

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
                  V+  + +H+ VIK G+ S L V NS+LD YC+   L  A Q F+++ E+D +T
Sbjct: 207 GFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVT 266

Query: 283 WNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           +N ++ GY K G + E +N+F KM+   + P  FTF +I+ A   L  +  GQQVH  +V
Sbjct: 267 FNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVV 326

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           +     N+ +ANAL+D Y+K   + ++ K+F EM + D +++  ++  Y  +G  KE++E
Sbjct: 327 KCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLE 386

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461
           LF E+  +G       F  +L+  + +  +D G +        +      +   +VD+  
Sbjct: 387 LFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYA 446

Query: 462 RAGRVKEAYELIKSMPFK 479
           + G   EA  +   +  +
Sbjct: 447 KCGEFGEANRIFSDLAIQ 464



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/212 (20%), Positives = 85/212 (40%), Gaps = 36/212 (16%)

Query: 319 SIIAACA-----TLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFS 373
           +II  C      TL A      V A I++ G + N   +N L+  + + G+++ ++K+F 
Sbjct: 66  NIIKPCTRNLVTTLTAPKPHLHVDASIIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLFD 125

Query: 374 EMSDRDL-------------------------------VTWTSMMIGYGAHGHGKEAIEL 402
           EM  +++                               VTWT ++ GY  +   +EA  L
Sbjct: 126 EMPHKNIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGL 185

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           F EM + G+ PD +    +L+  +    V+E  +    +     +    +   ++D   +
Sbjct: 186 FIEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCK 245

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKE 494
              +  A++L   +P +   +    L G  KE
Sbjct: 246 TRSLGLAFQLFNDIPERDSVTFNALLTGYSKE 277


>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
 gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 903

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 186/551 (33%), Positives = 322/551 (58%), Gaps = 25/551 (4%)

Query: 62  IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121
           +++A+ LFD     +  S+  MI GY+      +A  +F  ++ + +  +  +LS V +A
Sbjct: 332 MQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRA 391

Query: 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS 181
           C  +K LS    ++G+AIK  L   + V N+ +D+Y  C  ++  A  VF++M+ ++ VS
Sbjct: 392 CALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKC-QALAEAFRVFDEMRRRDAVS 450

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           W  +I  +  +G GY  L +F  ML   +E + ++F   ++AC + G + +G  IH++++
Sbjct: 451 WNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKAC-TGGSLGYGMEIHSSIV 509

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDA----NQYF------------DEMTEKDL----I 281
           K G  SN  V  S++DMY +   + +A    +++F            ++M  K L    +
Sbjct: 510 KSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCV 569

Query: 282 TWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           +WN+II+GY  K  S +   +F++M     +P+ FT+ +++  CA LA+   G+Q+HA +
Sbjct: 570 SWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQV 629

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           +++ L  ++ + + L+DMY+KCG++ DS+ +F +   RD VTW +M+ GY  HG G+EAI
Sbjct: 630 IKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAI 689

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDL 459
           +LF+ M+   ++P+ + F+++L AC+H GL+D+GL+YF  M  DY ++P    Y  +VD+
Sbjct: 690 QLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDI 749

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLP-NLGKLAALRVLDLKPNMMGT 518
           LG++G+VK A ELI+ MPF+ D+ +W  LLG C  HR    + + A   +L L P     
Sbjct: 750 LGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSA 809

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
           Y +LSN+YA  G WE+ +  R+ MRG   KKE G SW+E++D++  F+  DK     + +
Sbjct: 810 YTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWEEI 869

Query: 579 YGVLEMLIRHM 589
           Y  L ++   M
Sbjct: 870 YEELGLIYSEM 880



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 133/470 (28%), Positives = 234/470 (49%), Gaps = 24/470 (5%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           + A+ L+  Y       E+  +F  +PE++ VSW+ +IAG    N  + A   F EM + 
Sbjct: 216 VAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKV 275

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
               +    +SVL++C  +  L     +H  A+K        V  + +D+YA  C +M +
Sbjct: 276 NAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAK-CDNMQD 334

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A+++F++ +  N  S+  +ITGY+   +G+  L +F  ++  G+  +  S S   RACA 
Sbjct: 335 AQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACAL 394

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +S G  I+   IK     ++ V N+ +DMY +   L++A + FDEM  +D ++WN I
Sbjct: 395 VKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAI 454

Query: 287 IAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           IA +E++G   E L +F  M   R  P+ FTF SI+ AC T  +L  G ++H+ IV+ G+
Sbjct: 455 IAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKAC-TGGSLGYGMEIHSSIVKSGM 513

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFS----------------EMSDRDL----VTWTS 385
             N ++  +LIDMY+KCG I +++KI S                +M ++ L    V+W S
Sbjct: 514 ASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNS 573

Query: 386 MMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYN 445
           ++ GY      ++A  LF  M++ G+ PD+  +  VL  C++      G +    +    
Sbjct: 574 IISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKE 633

Query: 446 VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           +  +  I   +VD+  + G + ++  L+     + D   W  ++     H
Sbjct: 634 LQSDVYICSTLVDMYSKCGDLHDS-RLMFEKSLRRDFVTWNAMICGYAHH 682



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 121/429 (28%), Positives = 223/429 (51%), Gaps = 4/429 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           +I  Y     + +A + F+ MP RDVVSW  M++GY       ++  VFV+M R  +  +
Sbjct: 120 MINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFD 179

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
             T + +LK C  ++  S    +HG+ ++ G +  +   ++L+D+YA     +++ R VF
Sbjct: 180 GRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLR-VF 238

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
             +  KN VSW+ +I G   +      L  FKEM      ++   ++  +R+CA+   + 
Sbjct: 239 QGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELR 298

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY- 290
            G  +HA  +K  F ++  V  + LDMY + D + DA   FD     +  ++N +I GY 
Sbjct: 299 LGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYS 358

Query: 291 EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           ++    + L +F ++ S     +  + + +  ACA +  LS G Q++   ++  L  ++ 
Sbjct: 359 QEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVC 418

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           +ANA IDMY KC  ++++ ++F EM  RD V+W +++  +  +G G E + LF  M++S 
Sbjct: 419 VANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSR 478

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470
           + PD   F ++L AC+  G +  G++   S+    +  N  +   ++D+  + G ++EA 
Sbjct: 479 IEPDEFTFGSILKACT-GGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEA- 536

Query: 471 ELIKSMPFK 479
           E I S  F+
Sbjct: 537 EKIHSRFFQ 545



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 133/560 (23%), Positives = 247/560 (44%), Gaps = 44/560 (7%)

Query: 75  RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFT-LSSVLKACKGMKSLSNAAL 133
           R VVS+   +    S+     +++ F + + N+VN  + T  S V K C    +L     
Sbjct: 12  RSVVSFNRCLTEKISYR-RVPSFSYFTDFL-NQVNSVSTTNFSFVFKECAKQGALELGKQ 69

Query: 134 VHGMAIKEGLEGSIYVENSLMDVYATC------------------------------CIS 163
            H   I  G   + +V N L+ VY                                    
Sbjct: 70  AHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMINGYSKSND 129

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           M  A   FN M  ++ VSW ++++GY  +G     + VF +M  EG+E +  +F+I ++ 
Sbjct: 130 MFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKV 189

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C+     S G  IH  V++ G  +++   +++LDMY +     ++ + F  + EK+ ++W
Sbjct: 190 CSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSW 249

Query: 284 NTIIAG-YEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           + IIAG  + +  S  L  F +M+      +   + S++ +CA L+ L  G Q+HA  ++
Sbjct: 250 SAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALK 309

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
                +  +  A +DMYAKC N+ D+Q +F    + +  ++ +M+ GY    HG +A+ L
Sbjct: 310 SDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLL 369

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           F  ++ SG+  D I    V  AC+    + EGL+ +      +++ +  +    +D+ G+
Sbjct: 370 FHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGK 429

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEH--RLPNLGKLAALRVLDLKPNMMGTYI 520
              + EA+ +   M  + D   W  ++ A +++      L    ++    ++P+      
Sbjct: 430 CQALAEAFRVFDEMR-RRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGS 488

Query: 521 ILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQY--- 577
           IL         +        +  GM S   VG S I++  K CG I  +    H+++   
Sbjct: 489 ILKACTGGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSK-CGMI-EEAEKIHSRFFQR 546

Query: 578 --VYGVLEMLIRHMNETAYE 595
             V G +E L +  N+   E
Sbjct: 547 ANVSGTMEELEKMHNKRLQE 566



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 125/264 (47%), Gaps = 23/264 (8%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERD--------------------VVSWTVMIA 85
           S +  +LI  Y   G+IEEA  +     +R                      VSW  +I+
Sbjct: 517 SSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIIS 576

Query: 86  GYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEG 145
           GY        A  +F  M+   + P+ FT ++VL  C  + S      +H   IK+ L+ 
Sbjct: 577 GYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQS 636

Query: 146 SIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEM 205
            +Y+ ++L+D+Y+ C   + ++RL+F     ++ V+W  +I GYAH G G   + +F+ M
Sbjct: 637 DVYICSTLVDMYSKCG-DLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERM 695

Query: 206 LLEGVEMNPYSFSIAVRACASTGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264
           +LE ++ N  +F   +RACA  G +  G +  +     +G    LP  ++++D+  +   
Sbjct: 696 ILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGK 755

Query: 265 LSDANQYFDEMT-EKDLITWNTII 287
           +  A +   EM  E D + W T++
Sbjct: 756 VKRALELIREMPFEADDVIWRTLL 779


>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
          Length = 861

 Score =  358 bits (918), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 186/551 (33%), Positives = 322/551 (58%), Gaps = 25/551 (4%)

Query: 62  IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121
           +++A+ LFD     +  S+  MI GY+      +A  +F  ++ + +  +  +LS V +A
Sbjct: 290 MQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRA 349

Query: 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS 181
           C  +K LS    ++G+AIK  L   + V N+ +D+Y  C  ++  A  VF++M+ ++ VS
Sbjct: 350 CALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKC-QALAEAFRVFDEMRRRDAVS 408

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           W  +I  +  +G GY  L +F  ML   +E + ++F   ++AC + G + +G  IH++++
Sbjct: 409 WNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKAC-TGGSLGYGMEIHSSIV 467

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDA----NQYF------------DEMTEKDL----I 281
           K G  SN  V  S++DMY +   + +A    +++F            ++M  K L    +
Sbjct: 468 KSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCV 527

Query: 282 TWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           +WN+II+GY  K  S +   +F++M     +P+ FT+ +++  CA LA+   G+Q+HA +
Sbjct: 528 SWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQV 587

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           +++ L  ++ + + L+DMY+KCG++ DS+ +F +   RD VTW +M+ GY  HG G+EAI
Sbjct: 588 IKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAI 647

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDL 459
           +LF+ M+   ++P+ + F+++L AC+H GL+D+GL+YF  M  DY ++P    Y  +VD+
Sbjct: 648 QLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDI 707

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLP-NLGKLAALRVLDLKPNMMGT 518
           LG++G+VK A ELI+ MPF+ D+ +W  LLG C  HR    + + A   +L L P     
Sbjct: 708 LGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSA 767

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
           Y +LSN+YA  G WE+ +  R+ MRG   KKE G SW+E++D++  F+  DK     + +
Sbjct: 768 YTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWEEI 827

Query: 579 YGVLEMLIRHM 589
           Y  L ++   M
Sbjct: 828 YEELGLIYSEM 838



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 133/470 (28%), Positives = 234/470 (49%), Gaps = 24/470 (5%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           + A+ L+  Y       E+  +F  +PE++ VSW+ +IAG    N  + A   F EM + 
Sbjct: 174 VAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKV 233

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
               +    +SVL++C  +  L     +H  A+K        V  + +D+YA  C +M +
Sbjct: 234 NAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAK-CDNMQD 292

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A+++F++ +  N  S+  +ITGY+   +G+  L +F  ++  G+  +  S S   RACA 
Sbjct: 293 AQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACAL 352

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +S G  I+   IK     ++ V N+ +DMY +   L++A + FDEM  +D ++WN I
Sbjct: 353 VKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAI 412

Query: 287 IAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           IA +E++G   E L +F  M   R  P+ FTF SI+ AC T  +L  G ++H+ IV+ G+
Sbjct: 413 IAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKAC-TGGSLGYGMEIHSSIVKSGM 471

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFS----------------EMSDRDL----VTWTS 385
             N ++  +LIDMY+KCG I +++KI S                +M ++ L    V+W S
Sbjct: 472 ASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNS 531

Query: 386 MMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYN 445
           ++ GY      ++A  LF  M++ G+ PD+  +  VL  C++      G +    +    
Sbjct: 532 IISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKE 591

Query: 446 VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           +  +  I   +VD+  + G + ++  L+     + D   W  ++     H
Sbjct: 592 LQSDVYICSTLVDMYSKCGDLHDS-RLMFEKSLRRDFVTWNAMICGYAHH 640



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 121/429 (28%), Positives = 223/429 (51%), Gaps = 4/429 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           +I  Y     + +A + F+ MP RDVVSW  M++GY       ++  VFV+M R  +  +
Sbjct: 78  MINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFD 137

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
             T + +LK C  ++  S    +HG+ ++ G +  +   ++L+D+YA     +++ R VF
Sbjct: 138 GRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLR-VF 196

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
             +  KN VSW+ +I G   +      L  FKEM      ++   ++  +R+CA+   + 
Sbjct: 197 QGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELR 256

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY- 290
            G  +HA  +K  F ++  V  + LDMY + D + DA   FD     +  ++N +I GY 
Sbjct: 257 LGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYS 316

Query: 291 EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           ++    + L +F ++ S     +  + + +  ACA +  LS G Q++   ++  L  ++ 
Sbjct: 317 QEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVC 376

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           +ANA IDMY KC  ++++ ++F EM  RD V+W +++  +  +G G E + LF  M++S 
Sbjct: 377 VANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSR 436

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470
           + PD   F ++L AC+  G +  G++   S+    +  N  +   ++D+  + G ++EA 
Sbjct: 437 IEPDEFTFGSILKACT-GGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEA- 494

Query: 471 ELIKSMPFK 479
           E I S  F+
Sbjct: 495 EKIHSRFFQ 503



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 120/502 (23%), Positives = 237/502 (47%), Gaps = 18/502 (3%)

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHG-MAIKEGLEGSIYVENSLMDVYATCC 161
           M+ +   P  F L+ +L+     +   +A++V   M +++     +   N +++ Y+   
Sbjct: 32  MIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRD-----VVSWNKMINGYSKSN 86

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
             M  A   FN M  ++ VSW ++++GY  +G     + VF +M  EG+E +  +F+I +
Sbjct: 87  -DMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIIL 145

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
           + C+     S G  IH  V++ G  +++   +++LDMY +     ++ + F  + EK+ +
Sbjct: 146 KVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSV 205

Query: 282 TWNTIIAG-YEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           +W+ IIAG  + +  S  L  F +M+      +   + S++ +CA L+ L  G Q+HA  
Sbjct: 206 SWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHA 265

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           ++     +  +  A +DMYAKC N+ D+Q +F    + +  ++ +M+ GY    HG +A+
Sbjct: 266 LKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKAL 325

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLL 460
            LF  ++ SG+  D I    V  AC+    + EGL+ +      +++ +  +    +D+ 
Sbjct: 326 LLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMY 385

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH--RLPNLGKLAALRVLDLKPNMMGT 518
           G+   + EA+ +   M  + D   W  ++ A +++      L    ++    ++P+    
Sbjct: 386 GKCQALAEAFRVFDEMR-RRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTF 444

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQY- 577
             IL         +        +  GM S   VG S I++  K CG I  +    H+++ 
Sbjct: 445 GSILKACTGGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSK-CGMI-EEAEKIHSRFF 502

Query: 578 ----VYGVLEMLIRHMNETAYE 595
               V G +E L +  N+   E
Sbjct: 503 QRANVSGTMEELEKMHNKRLQE 524



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 125/264 (47%), Gaps = 23/264 (8%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERD--------------------VVSWTVMIA 85
           S +  +LI  Y   G+IEEA  +     +R                      VSW  +I+
Sbjct: 475 SSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIIS 534

Query: 86  GYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEG 145
           GY        A  +F  M+   + P+ FT ++VL  C  + S      +H   IK+ L+ 
Sbjct: 535 GYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQS 594

Query: 146 SIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEM 205
            +Y+ ++L+D+Y+ C   + ++RL+F     ++ V+W  +I GYAH G G   + +F+ M
Sbjct: 595 DVYICSTLVDMYSKCG-DLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERM 653

Query: 206 LLEGVEMNPYSFSIAVRACASTGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264
           +LE ++ N  +F   +RACA  G +  G +  +     +G    LP  ++++D+  +   
Sbjct: 654 ILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGK 713

Query: 265 LSDANQYFDEMT-EKDLITWNTII 287
           +  A +   EM  E D + W T++
Sbjct: 714 VKRALELIREMPFEADDVIWRTLL 737



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 109/235 (46%), Gaps = 32/235 (13%)

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           CA  G +  GK  HA +I  GF     V+N +L +Y        A+  FD+M  +D+++W
Sbjct: 16  CAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSW 75

Query: 284 NTIIAGYEKSG--------------------------------SSECLNMFSKMKSERFS 311
           N +I GY KS                                 S + + +F  M  E   
Sbjct: 76  NKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIE 135

Query: 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKI 371
            +  TF  I+  C+ L   S G Q+H  +VR G D ++  A+AL+DMYAK     +S ++
Sbjct: 136 FDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRV 195

Query: 372 FSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS 426
           F  + +++ V+W++++ G   +     A++ F EM K      + ++ +VL +C+
Sbjct: 196 FQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCA 250


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  358 bits (918), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 183/497 (36%), Positives = 293/497 (58%), Gaps = 7/497 (1%)

Query: 117 SVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNARLVFNDMK 175
           S+L  C   +++     VH   IK     S+Y+   L+ +Y  C C+   +AR +F++M 
Sbjct: 67  SILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLG--DARGMFDEMP 124

Query: 176 WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKL 235
            +N VSWT +I+ Y+  G  +  L +F EML    E N ++F+  + +C  +     G+ 
Sbjct: 125 QRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQ 184

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG- 294
           IH+  IK  + S++ V +S+LDMY +   + DA+  F  + E+D++    II+GY + G 
Sbjct: 185 IHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGL 244

Query: 295 SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
             E L +F +++ E  + N  T+ S++ A + LAAL+ G+QVH+ ++R G    + L N+
Sbjct: 245 DEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNS 304

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG-VRP 413
           LIDMY+KCGN+  +++IF  M +R  ++W +M++GY  HG  +E +ELF  M +   V+P
Sbjct: 305 LIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKP 364

Query: 414 DRIVFMAVLTACSHAGLVDEGLKYFKSM--NDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471
           D I ++AVL+ CSH  L D GL+ F +M      + P+   YGCVVDLLGRAGRV+EA++
Sbjct: 365 DSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFD 424

Query: 472 LIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK 531
            IK MPF P  ++WG LLG+C+ H    +G +   ++L+L+P   G Y+ILSN+YA+ GK
Sbjct: 425 FIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGK 484

Query: 532 WEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNE 591
           WE+    R +M+     KE G SW+E+   V  F A+D      + V   ++ L     E
Sbjct: 485 WEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVANKVKELSIKFKE 544

Query: 592 TAYEPDIDCLIHDLEGE 608
             Y PD+ C+++D++ E
Sbjct: 545 DGYVPDLSCVLYDVDEE 561



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 188/336 (55%), Gaps = 6/336 (1%)

Query: 45  PSI-LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           PS+ L T LI  Y     + +AR +FDEMP+R+VVSWT MI+ Y+      +A  +FVEM
Sbjct: 95  PSVYLRTRLIVLYNKCDCLGDARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVEM 154

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           +R++  PN FT +++L +C G         +H +AIK   E  ++V +SL+D+YA     
Sbjct: 155 LRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRI 214

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
            D A  VF+ +  ++ V+ T +I+GYA  G     L +F+++ +EG+  N  +++  + A
Sbjct: 215 CD-AHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTA 273

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
            +    ++ GK +H+ V++ G  S + ++NS++DMY +   +  A + FD M E+  I+W
Sbjct: 274 LSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISW 333

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSE-RFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           N ++ GY K G + E L +F  M+ E +  P+  T+ ++++ C+       G ++   +V
Sbjct: 334 NAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMV 393

Query: 342 --RRGLDGNLALANALIDMYAKCGNISDSQKIFSEM 375
             + G++ ++     ++D+  + G + ++     +M
Sbjct: 394 NGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKM 429



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 160/305 (52%), Gaps = 14/305 (4%)

Query: 200 GVFKEMLLE----GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSI 255
           G  KE LL+    G E+    +   +  C S   +  G+ +H  +IK  +  ++ +   +
Sbjct: 44  GQLKEALLQMAILGREVKFEGYDSILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRL 103

Query: 256 LDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNC 314
           + +Y + DCL DA   FDEM ++++++W  +I+ Y + G + E LN+F +M      PN 
Sbjct: 104 IVLYNKCDCLGDARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNH 163

Query: 315 FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSE 374
           FTF +I+ +C        G+Q+H+  ++R  + ++ + ++L+DMYAK G I D+  +F  
Sbjct: 164 FTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHC 223

Query: 375 MSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434
           + +RD+V  T+++ GY   G  +EA++LF ++   G+  + + + +VLTA S    ++ G
Sbjct: 224 LPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHG 283

Query: 435 LKYFKSMNDYNVNPNKEIY----GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490
               K ++ + +   +  Y      ++D+  + G V  A  +  SMP +   S W  +L 
Sbjct: 284 ----KQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCIS-WNAMLV 338

Query: 491 ACKEH 495
              +H
Sbjct: 339 GYSKH 343


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  358 bits (918), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 192/563 (34%), Positives = 317/563 (56%), Gaps = 38/563 (6%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR- 105
            ++T L+  Y + G +  +R  FD++P++DV +W  MI+ Y      ++A   F +++  
Sbjct: 52  FISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLV 111

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           +E+ P+ +T   VLKAC    +L +   +H  A K G + +++V  SL+ +Y+    +  
Sbjct: 112 SEIRPDFYTFPPVLKACG---TLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFT-G 167

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            AR +F+DM +++  SW  +I+G   +GN    L V  EM LEG++MN            
Sbjct: 168 IARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMN------------ 215

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
                              F + + ++   +DMY +   L  A++ F+ +  KD+I+WNT
Sbjct: 216 -------------------FVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNT 256

Query: 286 IIAGYEKSG-SSECLNMFSKMKS-ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           +I GY ++G +SE + ++  M+  +   PN  T+ SI+ A A + AL  G ++H  +++ 
Sbjct: 257 LITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKT 316

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
            L  ++ +A  LID+Y KCG + D+  +F ++     VTW +++  +G HGH ++ ++LF
Sbjct: 317 NLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLF 376

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
            EM+  GV+PD + F+++L+ACSH+G V+EG   F+ M +Y + P+ + YGC+VDLLGRA
Sbjct: 377 GEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRA 436

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G ++ AY+ IK MP +PD S+WG LLGAC+ H    LGK A+ R+ ++    +G Y++LS
Sbjct: 437 GYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLS 496

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           NIYA  GKWE   K R + R  G KK  G S IEV  KV  F   ++     + +Y  L 
Sbjct: 497 NIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELR 556

Query: 584 MLIRHMNETAYEPDIDCLIHDLE 606
           +L   M    Y PD   ++ D+E
Sbjct: 557 VLTAKMKSLGYIPDYSFVLQDVE 579



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 198/412 (48%), Gaps = 47/412 (11%)

Query: 131 AALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYA 190
           A  +H + +  G   SI++   L+++YA     +  +R  F+ +  K+  +W ++I+ Y 
Sbjct: 35  AKCLHALLVVAGKVQSIFISTRLVNLYANLG-DVSLSRCTFDQIPQKDVYAWNSMISAYV 93

Query: 191 HSGNGYGGLGVFKEMLLEGVEMNP--YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSN 248
           H+G+ +  +G F ++LL   E+ P  Y+F   ++AC   G +  G+ IH    K GF  N
Sbjct: 94  HNGHFHEAIGCFYQLLLVS-EIRPDFYTFPPVLKAC---GTLVDGRKIHCWAFKLGFQWN 149

Query: 249 LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKS 307
           + V  S++ MY RF     A   FD+M  +D+ +WN +I+G  ++G +++ L++  +M+ 
Sbjct: 150 VFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRL 209

Query: 308 ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISD 367
           E    N  T  SI+                                  +DMYAK G +  
Sbjct: 210 EGIKMNFVTVVSILP-------------------------------VFVDMYAKLGLLDS 238

Query: 368 SQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK-SGVRPDRIVFMAVLTACS 426
           + K+F  +  +D+++W +++ GY  +G   EAIE++  M +   + P++  ++++L A +
Sbjct: 239 AHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYA 298

Query: 427 HAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWG 486
           H G + +G+K    +   N++ +  +  C++D+ G+ GR+ +A  L   +P +     W 
Sbjct: 299 HVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVP-QESSVTWN 357

Query: 487 PLLG--ACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI----YAAEGKW 532
            ++       H    L     +    +KP+ +    +LS      +  EGKW
Sbjct: 358 AIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKW 409



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 137/272 (50%), Gaps = 21/272 (7%)

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
           F K +HA ++  G   ++ +   ++++Y     +S +   FD++ +KD+  WN++I+ Y 
Sbjct: 34  FAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYV 93

Query: 292 KSGS-SECLNMFSKMK-SERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
            +G   E +  F ++       P+ +TF  ++ AC TL     G+++H    + G   N+
Sbjct: 94  HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNV 150

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
            +A +LI MY++ G    ++ +F +M  RD+ +W +M+ G   +G+  +A+++ DEM   
Sbjct: 151 FVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLE 210

Query: 410 GVRPDRIVFMAVLTAC----SHAGLVDEGLKYFKSMNDYNVNPNKEI--YGCVVDLLGRA 463
           G++ + +  +++L       +  GL+D   K F+      + P K++  +  ++    + 
Sbjct: 211 GIKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFE------IIPVKDVISWNTLITGYAQN 264

Query: 464 GRVKEAYELIKSM----PFKPDESVWGPLLGA 491
           G   EA E+ K M       P++  W  +L A
Sbjct: 265 GLASEAIEVYKMMEECKEIIPNQGTWVSILPA 296


>gi|147770185|emb|CAN69881.1| hypothetical protein VITISV_024112 [Vitis vinifera]
          Length = 734

 Score =  358 bits (918), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 192/523 (36%), Positives = 297/523 (56%), Gaps = 4/523 (0%)

Query: 43  KGPSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFV 101
           K PS    N L++ Y D G   + + +FDEM  +++VSW ++I+ Y       +A  +F 
Sbjct: 118 KNPSGSIENCLLRMYCDCGSXIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFS 177

Query: 102 EMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
           +M  + + PN+    S+L++C G   L     +H   I+  L  +I VE ++ ++Y  C 
Sbjct: 178 DMQASGIRPNSAVYMSLLQSCLGPSFLELGKQMHSHVIRAQLNANITVETAICNMYVRCG 237

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
             ++ A+LVF+ M  +N V+WT L+ GY  +      L +F  M +EGVE++ + FSI +
Sbjct: 238 W-LEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVL 296

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
           + C        GK IH+ ++K G  S + V   ++D Y +   +  A + F  ++E + +
Sbjct: 297 KVCCXLEDWDMGKQIHSHIVKLGXESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDV 356

Query: 282 TWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           +W+ +I+G+ +SG  E C+ +F+ ++SE    N F +TS+  ACA  A L+ G Q H   
Sbjct: 357 SWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDA 416

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           ++RGL   L   +A++ MY+KCG +  +++ F  + + D V WT+++ GY  HG+  EA+
Sbjct: 417 IKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEAL 476

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDL 459
             F  M   GVRP+ + F+AVLTACSH+GLV E  +Y  SM+ DY V P  + Y C++D 
Sbjct: 477 GFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMIDT 536

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
             RAG + EA ELI  MPF+PD   W  LLG C  H    LGK+AA  +  L P     Y
Sbjct: 537 YSRAGLLXEALELINRMPFEPDAMSWKSLLGGCWAHCDLKLGKIAAENLFRLDPGDTAGY 596

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKV 562
           I+L N+Y+A GKWEE    RK+M     KKEV  SWI V+ +V
Sbjct: 597 ILLFNLYSAFGKWEEAGHVRKLMAERELKKEVSCSWISVKGQV 639



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 148/304 (48%), Gaps = 3/304 (0%)

Query: 202 FKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR 261
            KEM    V + P+S+     AC     ++ G+LIH  + +     +  + N +L MYC 
Sbjct: 75  LKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGSIENCLLRMYCD 134

Query: 262 FDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSI 320
                D  + FDEM  K+L++W  +I+ Y K+G  E  + +FS M++    PN   + S+
Sbjct: 135 CGSXIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSL 194

Query: 321 IAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDL 380
           + +C   + L  G+Q+H+ ++R  L+ N+ +  A+ +MY +CG +  ++ +F  M  ++ 
Sbjct: 195 LQSCLGPSFLELGKQMHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNA 254

Query: 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS 440
           VTWT +M+GY      + A+ELF  M   GV  D  VF  VL  C      D G +    
Sbjct: 255 VTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCXLEDWDMGKQIHSH 314

Query: 441 MNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL-GACKEHRLPN 499
           +          +   +VD   + G ++ AY     +  +P++  W  L+ G  +  RL +
Sbjct: 315 IVKLGXESEVSVGTPLVDFYVKCGDIESAYRSFGRIS-EPNDVSWSALISGFSQSGRLED 373

Query: 500 LGKL 503
             K+
Sbjct: 374 CIKI 377



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 100/201 (49%)

Query: 297 ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALI 356
           E  +   +M     S    ++  +  AC  L +L+ G+ +H  + R   + + ++ N L+
Sbjct: 70  EAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGSIENCLL 129

Query: 357 DMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI 416
            MY  CG+  D QK+F EM  ++LV+W  ++  Y  +G  ++AI LF +M  SG+RP+  
Sbjct: 130 RMYCDCGSXIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSA 189

Query: 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
           V+M++L +C     ++ G +    +    +N N  +   + ++  R G ++ A  +   M
Sbjct: 190 VYMSLLQSCLGPSFLELGKQMHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGM 249

Query: 477 PFKPDESVWGPLLGACKEHRL 497
             +   +  G ++G  +  +L
Sbjct: 250 DAQNAVTWTGLMVGYTQAKKL 270


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  358 bits (918), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 199/563 (35%), Positives = 326/563 (57%), Gaps = 8/563 (1%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
            LI+SY   G IE AR +FD+ P+  V +W  MI  Y+      +A +++  M    V P
Sbjct: 44  KLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRP 103

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           ++ T + VLKAC     L +       A+ +G    ++V  +++++YA C   MD A  V
Sbjct: 104 DSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCG-KMDEAMRV 162

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F+ M  ++ V WTT+ITG A +G     + ++++M  + VE +       ++AC + G  
Sbjct: 163 FDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHS 222

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
             G  IH  +I+     ++ V  S++DMY +   L  A+  F  M  K++I+W+ +I+G+
Sbjct: 223 KMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGF 282

Query: 291 EKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
            ++G +   L +   M+S  + P+  +  S++ AC+ +  L  G+ VH  IVRR L  + 
Sbjct: 283 AQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRR-LHFDC 341

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
             + A+IDMY+KCG++S ++ +F ++S RD ++W +++  YG HG G+EA+ LF +M ++
Sbjct: 342 VSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRET 401

Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKE 468
            V+PD   F ++L+A SH+GLV++G  +F  M N+Y + P+++ Y C+VDLL RAGRV+E
Sbjct: 402 NVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEE 461

Query: 469 AYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA 528
           A ELI+SM  +P  ++W  LL  C  H    +G++AA +VL+L P+  G Y ++SN +A 
Sbjct: 462 AQELIESMITEPGIAIWVALLSGCLNHGKFLIGEMAAKKVLELNPDDPGIYSLVSNFFAT 521

Query: 529 EGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQY--VYGVLEMLI 586
             +W+E A+ RKIM+  G KK  G S +EV  K+  F+  DK  SH QY  +  VL  L 
Sbjct: 522 ARRWDEVAEVRKIMKKTGMKKVPGYSVMEVNGKLHAFLMEDK--SHHQYEEIMQVLGKLD 579

Query: 587 RHMNETAYEPDIDCLIHDLEGET 609
             M    Y P  + ++H+LE E 
Sbjct: 580 YEMKAMGYVPKTEFVLHNLEEEV 602



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 131/255 (51%), Gaps = 2/255 (0%)

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS 295
           IHA +I  G   +      ++  Y R   +  A Q FD+  +  +  WN +I  Y + G+
Sbjct: 26  IHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGA 85

Query: 296 S-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
             E L+++ +M SE   P+  T+T ++ AC     L  G++     V +G   ++ +  A
Sbjct: 86  MFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAA 145

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
           ++++YAKCG + ++ ++F +M  RDLV WT+M+ G   +G  +EA++++ +M K  V  D
Sbjct: 146 VLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGD 205

Query: 415 RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
            +V + ++ AC+  G    GL     M   ++  +  +   +VD+  + G ++ A  + +
Sbjct: 206 GVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFR 265

Query: 475 SMPFKPDESVWGPLL 489
            M +K   S W  L+
Sbjct: 266 RMLYKNVIS-WSALI 279



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 124/256 (48%), Gaps = 12/256 (4%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I+ T+L+  Y   G +E A  +F  M  ++V+SW+ +I+G+        A  + V+M   
Sbjct: 242 IVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSF 301

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
              P++ +L SVL AC  +  L     VHG  ++  L        +++D+Y+ C  S+  
Sbjct: 302 GYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRR-LHFDCVSSTAVIDMYSKCG-SLSF 359

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR VF+ + +++ +SW  +I  Y   G+G   L +F +M    V+ +  +F+  + A + 
Sbjct: 360 ARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSH 419

Query: 227 TGWVSFGKLIHAAVI-KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLITWN 284
           +G V  G+   + ++ ++    +      ++D+  R   + +A +  + M TE  +  W 
Sbjct: 420 SGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWV 479

Query: 285 TIIAGYEKSGSSECLN 300
            +++G        CLN
Sbjct: 480 ALLSG--------CLN 487



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 75/155 (48%), Gaps = 1/155 (0%)

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
           ++HA ++  G+ G+      LI  YA+ G+I  ++++F +     +  W +M+I Y   G
Sbjct: 25  KIHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRG 84

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG 454
              EA+ L+  M   GVRPD   +  VL AC+ +  +  G + ++   D     +  +  
Sbjct: 85  AMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGA 144

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
            V++L  + G++ EA  +   M  + D   W  ++
Sbjct: 145 AVLNLYAKCGKMDEAMRVFDKMG-RRDLVCWTTMI 178


>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial [Vitis vinifera]
 gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
          Length = 700

 Score =  358 bits (918), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 179/516 (34%), Positives = 308/516 (59%), Gaps = 5/516 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S + T L+  Y     +E++R +FDE+ +R+VV WT MI GY   +C  +   +F  M  
Sbjct: 172 SFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMRE 231

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             V  N +TL S++ AC  + +L     VHG  IK G + + ++   L+D+Y  C   + 
Sbjct: 232 GLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCG-DIR 290

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +A  VF+++   + VSWT +I GYA  G     L +F +   + +  N  + S  + ACA
Sbjct: 291 DAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACA 350

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
            TG ++ G+ +H   IK G   +    N+++DMY +   + DA   F+ + +KD+I WN+
Sbjct: 351 QTGSLNMGRSVHCLGIKLG-SEDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNS 409

Query: 286 IIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           II+GY ++G + E L +F +M+S+   P+  T  S+++ACA++ A   G  +H   ++ G
Sbjct: 410 IISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAG 469

Query: 345 L-DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           L  G++ +  AL++ YAKCG+   ++ IF EM +++ +TW++M+ GYG  G    ++ELF
Sbjct: 470 LLSGSVYVGTALLNFYAKCGDAESARVIFDEMGEKNTITWSAMIGGYGIQGDCSRSLELF 529

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGR 462
            +M+K  + P+ ++F  +L+ACSH+G++ EG +YF +M   YN  P+ + Y C+VDLL R
Sbjct: 530 GDMLKEKLEPNEVIFTTILSACSHSGMLGEGWRYFNTMCQVYNFVPSMKHYACMVDLLAR 589

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AGR++EA + I+ +P +PD S+ G  L  C+ H   +LG++A  R+L+L P+    Y+++
Sbjct: 590 AGRLEEALDFIEKIPIQPDVSLLGAFLHGCRLHSRFDLGEVAVRRMLELHPDKACYYVLM 649

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEV 558
           SN+YA+EG+W +  +  ++M+  G  K  G S +++
Sbjct: 650 SNLYASEGRWSQANQVMELMKQRGLAKLPGWSLVDI 685



 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 130/382 (34%), Positives = 210/382 (54%), Gaps = 5/382 (1%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T L+  Y   G +E AR +FD +   D+ SW VMI  Y   + +++    +   +R  +N
Sbjct: 75  TKLVSLYGSFGHVECARLMFDRIRNPDLYSWKVMIRWYFLNDSYSEIVQFYNTRLRKCLN 134

Query: 110 P-NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
             +    S VLKAC  ++       +H   +K G   S +V   L+D+YA  C  ++++R
Sbjct: 135 EYDNVVFSIVLKACSELRETDEGRKLHCQIVKVGSPDS-FVLTGLVDMYAK-CREVEDSR 192

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            VF+++  +N V WT++I GY  +     GL +F  M    VE N Y+    V AC   G
Sbjct: 193 RVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLG 252

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            +  GK +H  VIK GF  N  ++  +LD+Y +   + DA   FDE++  DL++W  +I 
Sbjct: 253 ALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIV 312

Query: 289 GYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           GY + G   E L +F+  + +   PN  T +S+++ACA   +L+ G+ VH   ++ G + 
Sbjct: 313 GYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLGSE- 371

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           +    NAL+DMYAKC  I D++ +F  + D+D++ W S++ GY  +G+  EA+ELFD+M 
Sbjct: 372 DATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMR 431

Query: 408 KSGVRPDRIVFMAVLTACSHAG 429
              V PD I  ++VL+AC+  G
Sbjct: 432 SDSVYPDAITLVSVLSACASVG 453



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 198/380 (52%), Gaps = 19/380 (5%)

Query: 117 SVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW 176
           S+L  CK + SL     +H + +  GL   +  E  L+ +Y +    ++ ARL+F+ ++ 
Sbjct: 44  SLLGICKTVSSLRK---IHALLVVHGLSEDLLCETKLVSLYGSFG-HVECARLMFDRIRN 99

Query: 177 KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYS---FSIAVRACASTGWVSFG 233
            +  SW  +I  Y    + Y  +  F    L    +N Y    FSI ++AC+       G
Sbjct: 100 PDLYSWKVMIRWY-FLNDSYSEIVQFYNTRLRKC-LNEYDNVVFSIVLKACSELRETDEG 157

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
           + +H  ++K G   +  V+  ++DMY +   + D+ + FDE+ +++++ W ++I GY ++
Sbjct: 158 RKLHCQIVKVGSPDSF-VLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQN 216

Query: 294 GS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
               E L +F++M+      N +T  S++ AC  L AL  G+ VH  +++ G D N  L 
Sbjct: 217 DCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLV 276

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
             L+D+Y KCG+I D+  +F E+S  DLV+WT+M++GY   G+ +EA++LF +     + 
Sbjct: 277 TPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLL 336

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE---IYGCVVDLLGRAGRVKEA 469
           P+ +   +VL+AC+  G ++ G    +S++   +    E       +VD+  +   + +A
Sbjct: 337 PNTVTTSSVLSACAQTGSLNMG----RSVHCLGIKLGSEDATFENALVDMYAKCHMIGDA 392

Query: 470 YELIKSMPFKPDESVWGPLL 489
             + +++ F  D   W  ++
Sbjct: 393 RYVFETV-FDKDVIAWNSII 411



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 45/79 (56%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   + T L+  Y   G  E AR +FDEM E++ ++W+ MI GY      +++  +F +M
Sbjct: 473 GSVYVGTALLNFYAKCGDAESARVIFDEMGEKNTITWSAMIGGYGIQGDCSRSLELFGDM 532

Query: 104 VRNEVNPNAFTLSSVLKAC 122
           ++ ++ PN    +++L AC
Sbjct: 533 LKEKLEPNEVIFTTILSAC 551


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  358 bits (918), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 182/500 (36%), Positives = 293/500 (58%), Gaps = 3/500 (0%)

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           + FTL  +L+ C   +SL      HG+AI  GL       N L+++Y T C   D AR V
Sbjct: 55  DVFTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLY-TKCGQNDCARRV 113

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F+ M  ++ +SW T+I GY H+      L +F  M  EG +M  ++ S  + ACA+   +
Sbjct: 114 FDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYAI 173

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
              K +H   IK    S+  V  + LD+Y + + + DA   F+ M EK  +TW+++ AG+
Sbjct: 174 IECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGF 233

Query: 291 EKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
            ++G   E L +F   + E      FT +SI++ CA+LA +  G QVHA IV+ G   NL
Sbjct: 234 VQNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRNL 293

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
            +A +L+D+YAKCG I  S ++F++M ++++V W +M+  +  H H  EA+ LF++M + 
Sbjct: 294 FVATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQV 353

Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKE 468
           G+ P+ + ++++L+ACSH GLV+EG  YF  + +D    PN   Y C+VD+LGR+G+  E
Sbjct: 354 GIFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSGKTDE 413

Query: 469 AYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA 528
           A++L+  MPF+P  S+WG LLG+ + H+   L ++AA ++  L+P   G +++LSN+YAA
Sbjct: 414 AWKLLDKMPFEPTASMWGSLLGSSRIHKNIRLARIAAEQLFRLEPENGGNHVLLSNVYAA 473

Query: 529 EGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRH 588
            G WE     RK +R  G+KKE+G SWIE + K+  F+A ++       VY  LE +   
Sbjct: 474 SGNWENVVVARKYLRDSGAKKEMGRSWIEAKGKIHVFVAGEREHPGITDVYNKLEEIYHE 533

Query: 589 MNETAYEPDIDCLIHDLEGE 608
           M + ++  +  C +HD+  +
Sbjct: 534 MRKISHRANTQCDLHDVHAD 553



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 101/326 (30%), Positives = 170/326 (52%), Gaps = 3/326 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y   G  + AR +FD M  R ++SW  MIAGYT      +A  +F  M R      
Sbjct: 97  LINLYTKCGQNDCARRVFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMT 156

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
            FTLSS L AC    ++     +H +AIK  L+ S +V  + +DVYA C +  D A  VF
Sbjct: 157 EFTLSSTLCACAAKYAIIECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKD-ACWVF 215

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
            +M  K  V+W++L  G+  +G     L +F+    EG+++  ++ S  +  CAS   + 
Sbjct: 216 ENMPEKTSVTWSSLFAGFVQNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALII 275

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            G  +HA ++KHGF  NL V  S++D+Y +   +  + + F +M EK+++ WN +IA + 
Sbjct: 276 EGTQVHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFS 335

Query: 292 KSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR-RGLDGNL 349
           +   S E + +F KM+     PN  T+ SI++AC+    +  G+     ++  R  + N+
Sbjct: 336 RHAHSWEAMILFEKMQQVGIFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNV 395

Query: 350 ALANALIDMYAKCGNISDSQKIFSEM 375
              + ++D+  + G   ++ K+  +M
Sbjct: 396 LHYSCMVDVLGRSGKTDEAWKLLDKM 421



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 97/189 (51%), Gaps = 1/189 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S + T  +  Y    +I++A  +F+ MPE+  V+W+ + AG+     H +   +F    R
Sbjct: 192 SFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFVQNGLHEEVLCLFQSTQR 251

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             +    FT+SS+L  C  +  +     VH + +K G   +++V  SL+DVYA C   ++
Sbjct: 252 EGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRNLFVATSLVDVYAKCG-QIE 310

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            +  VF DM+ KN V W  +I  ++   + +  + +F++M   G+  N  ++   + AC+
Sbjct: 311 KSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQVGIFPNEVTYLSILSACS 370

Query: 226 STGWVSFGK 234
            TG V  G+
Sbjct: 371 HTGLVEEGR 379



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 86/186 (46%), Gaps = 1/186 (0%)

Query: 305 MKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGN 364
           ++ ER   + FT   ++  CA   +L  G+  H   +  GL  +    N LI++Y KCG 
Sbjct: 47  VRVERDLIDVFTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQ 106

Query: 365 ISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTA 424
              ++++F  MS R +++W +M+ GY  +    EA++LF  M + G +       + L A
Sbjct: 107 NDCARRVFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCA 166

Query: 425 CSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESV 484
           C+    + E  +         ++ +  +    +D+  +   +K+A  + ++MP K   + 
Sbjct: 167 CAAKYAIIECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVT- 225

Query: 485 WGPLLG 490
           W  L  
Sbjct: 226 WSSLFA 231


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  357 bits (917), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 189/562 (33%), Positives = 320/562 (56%), Gaps = 4/562 (0%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM-VRNEV 108
            +L+  Y   G + EA+ LFD+   ++ VSW  MI G  +     +A+ +F EM ++ ++
Sbjct: 173 NSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDI 232

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
             N  T+ ++L AC  +  L +   +HG +I+ G +    V N  +  YA C + +   R
Sbjct: 233 EVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAER 292

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            VF  M+ K   SW  LI G A +G+    L ++ +M   G+  + ++    + A A   
Sbjct: 293 -VFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLK 351

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            + +GK +H  V++HG   +  +  S+L +Y      S A   FD M EK  ++WN +I+
Sbjct: 352 SLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMIS 411

Query: 289 GYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           GY ++G  E  L +F K+ S+ F P+     S++ AC+  +AL  G++ H   ++  L  
Sbjct: 412 GYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLME 471

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           ++ +A + IDMYAK G I +S+ +F  + ++DL +W +++  YG HG G+E+IELF+ M 
Sbjct: 472 DVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMR 531

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYN-VNPNKEIYGCVVDLLGRAGRV 466
           K G  PD   F+ +LT CSHAGLV+EGLKYF  M +++ + P  E Y CV+D+LGRAGR+
Sbjct: 532 KVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRL 591

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            +A  L+  MP +PD  VW  LL  C+      +G++ A ++L+L+P  +  Y+ LSN+Y
Sbjct: 592 DDALRLVHEMPEQPDSRVWSSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLSNLY 651

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           A  G+W++  + R++++ +G +K+ G SWIE+  KV  F+A D +   ++ +      L 
Sbjct: 652 AGSGRWDDVRRVRQMIKDIGLQKDAGCSWIELGGKVHSFVAGDNLLPQSKEMSMTWRKLE 711

Query: 587 RHMNETAYEPDIDCLIHDLEGE 608
           + M +  Y+P+   ++HD++ E
Sbjct: 712 KKMCKIGYKPNTSAVLHDVDEE 733



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 130/452 (28%), Positives = 228/452 (50%), Gaps = 14/452 (3%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE--VN 109
           LI  Y   G ++ A  +F  MP R++VSW  +I+G++        + + VEM+  E  + 
Sbjct: 72  LIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLL 131

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P+  TL +VL  C     +     +HG+A+K GL   + V NSL+D+Y+ C   +  A++
Sbjct: 132 PDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGY-LTEAQM 190

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEM-LLEGVEMNPYSFSIAVRACASTG 228
           +F+    KN VSW T+I G    G  +    +F+EM + E +E+N  +    + AC    
Sbjct: 191 LFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEIS 250

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            +   K +H   I+HGF  +  V N  +  Y +   L  A + F  M  K + +WN +I 
Sbjct: 251 QLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIG 310

Query: 289 GYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           G  ++G   + LN++ +M      P+ FT  S++ A A L +L  G++VH  ++R GL+ 
Sbjct: 311 GCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEI 370

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           +  +  +L+ +Y  CG  S ++ +F  M ++  V+W +M+ GY  +G  ++A+ LF ++V
Sbjct: 371 DSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLV 430

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP---NKEIYGC-VVDLLGRA 463
             G +P  I  ++VL ACS        L+  K  + Y +           C  +D+  ++
Sbjct: 431 SDGFQPSDIAVVSVLGACSQ----QSALRLGKETHCYALKALLMEDVFVACSTIDMYAKS 486

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           G +KE+  +   +  K D + W  ++ A   H
Sbjct: 487 GCIKESRSVFDGLKNK-DLASWNAIIAAYGVH 517



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 115/415 (27%), Positives = 206/415 (49%), Gaps = 15/415 (3%)

Query: 93  HNQAWTVFVEMVRN-EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVEN 151
           ++ A  +FV+++ + E N + FT   V+KAC G        ++HGM IK GL   ++V N
Sbjct: 11  YSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGN 70

Query: 152 SLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLL--EG 209
           +L+ +Y      +D A  VF+ M  +N VSW ++I+G++ +G       +  EM+   EG
Sbjct: 71  ALIAMYGKFGF-VDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEG 129

Query: 210 VEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDAN 269
           +  +  +    +  CA    V  G  IH   +K G   ++ V NS++DMY +   L++A 
Sbjct: 130 LLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQ 189

Query: 270 QYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMK-SERFSPNCFTFTSIIAACATL 327
             FD+   K+ ++WNT+I G    G   E  N+F +M+  E    N  T  +I+ AC  +
Sbjct: 190 MLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEI 249

Query: 328 AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMM 387
           + L   +++H   +R G   +  +AN  +  YAKCG +  ++++F  M  + + +W +++
Sbjct: 250 SQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALI 309

Query: 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN 447
            G   +G  ++A+ L+ +M  SG+ PD     ++L A +H     + L+Y K ++ + + 
Sbjct: 310 GGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHL----KSLRYGKEVHGFVLR 365

Query: 448 PNKEIYGCV----VDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLP 498
              EI   +    + L    G    A  L   M  K   S W  ++    ++ LP
Sbjct: 366 HGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVS-WNAMISGYSQNGLP 419



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 176/355 (49%), Gaps = 26/355 (7%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++A   + +Y   G++  A  +F  M  + V SW  +I G        +A  ++++M  +
Sbjct: 272 LVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYS 331

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + P+ FT+ S+L A   +KSL     VHG  ++ GLE   ++  SL+ +Y  C  S  +
Sbjct: 332 GLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGES-SS 390

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           ARL+F+ M+ K+ VSW  +I+GY+ +G     L +F++++ +G + +  +    + AC+ 
Sbjct: 391 ARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQ 450

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  GK  H   +K     ++ V  S +DMY +  C+ ++   FD +  KDL +WN I
Sbjct: 451 QSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAI 510

Query: 287 IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           IA Y   G   E + +F +M+     P+ FTF  I+  C+           HAG+V  GL
Sbjct: 511 IAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCS-----------HAGLVEEGL 559

Query: 346 ------------DGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMM 387
                       +  L     ++DM  + G + D+ ++  EM ++ D   W+S++
Sbjct: 560 KYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVWSSLL 614



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 116/246 (47%), Gaps = 5/246 (2%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S +  +L+  Y   G    AR LFD M E+  VSW  MI+GY+       A  +F ++V 
Sbjct: 372 SFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVS 431

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA-TCCISM 164
           +   P+   + SVL AC    +L      H  A+K  L   ++V  S +D+YA + CI  
Sbjct: 432 DGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIK- 490

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
             +R VF+ +K K+  SW  +I  Y   G+G   + +F+ M   G   + ++F   +  C
Sbjct: 491 -ESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVC 549

Query: 225 ASTGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLIT 282
           +  G V  G K  +     HG    L     ++DM  R   L DA +   EM E+ D   
Sbjct: 550 SHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRV 609

Query: 283 WNTIIA 288
           W+++++
Sbjct: 610 WSSLLS 615


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  357 bits (917), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 203/577 (35%), Positives = 307/577 (53%), Gaps = 11/577 (1%)

Query: 37  DPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQA 96
           D PL    PS +  +L+  Y        A+ L    P R VV+WT +IAG         A
Sbjct: 37  DNPL----PSFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSA 92

Query: 97  WTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDV 156
              F  M R+ + PN FT     KA   ++S      VH +A+K G    ++V  S  D+
Sbjct: 93  LFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDM 152

Query: 157 YATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYS 216
           Y+   ++ + AR +F++M  +N  +W   ++     G     L  F E   EG E N  +
Sbjct: 153 YSKAGLT-EEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLIT 211

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
           F   + ACA   ++  G+ +H  V++ GF +++ V N ++D Y +   +  +   F  ++
Sbjct: 212 FCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEIIFSGIS 271

Query: 277 EKDLITWNTIIAGYEKSGSSE--CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334
           + + ++W ++I  Y ++   E  CL +F + + E   P  F  +S+++ACA L+ L  G+
Sbjct: 272 KPNDVSWCSMIVSYVQNDEEEKACL-VFLRARKEGIEPTDFMVSSVLSACAGLSVLEVGK 330

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
            VH   V+  + GN+ + +AL+DMY KCG+I D+++ F EM +R+LVTW +M+ GY   G
Sbjct: 331 SVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQG 390

Query: 395 HGKEAIELFDEMV--KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKE 451
               A+ LFDEM      V P+ + F+ VL+ACS AG V+ G++ F+SM   Y + P  E
Sbjct: 391 QADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAE 450

Query: 452 IYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDL 511
            Y CVVDLLGRAG V++AY+ IK MP +P  SVWG LLGA K      LGK+AA  + +L
Sbjct: 451 HYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFEL 510

Query: 512 KPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKM 571
            P   G +++LSN++AA G+WEE    RK M+ +G KK  G SWI   + V  F A D  
Sbjct: 511 DPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVHVFQAKDTS 570

Query: 572 GSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
                 +  +L  L   M    Y PD    + DLE E
Sbjct: 571 HERNSEIQAMLAKLRGEMEAAGYIPDTSFALFDLEEE 607



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 134/281 (47%), Gaps = 5/281 (1%)

Query: 212 MNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLP--VMNSILDMYCRFDCLSDAN 269
           ++P S +  V +  ST     G+  HA +IK    + LP  + N +++MY + D  + A 
Sbjct: 4   LSPNSLASLVESAVSTQCSRLGRAAHAQIIKT-LDNPLPSFIYNHLVNMYSKLDRPNSAQ 62

Query: 270 QYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLA 328
                   + ++TW  +IAG  ++G  +  L  FS M+ +   PN FTF     A  +L 
Sbjct: 63  LLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLR 122

Query: 329 ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMI 388
           +   G+QVHA  V+ G   ++ +  +  DMY+K G   +++K+F EM +R++ TW + + 
Sbjct: 123 SPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLS 182

Query: 389 GYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP 448
                G   +A+  F E    G  P+ I F A L AC+ A  +  G +    +       
Sbjct: 183 NSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEA 242

Query: 449 NKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           +  +   ++D  G+  +V    E+I S   KP++  W  ++
Sbjct: 243 DVSVANGLIDFYGKCHQVG-CSEIIFSGISKPNDVSWCSMI 282


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  357 bits (917), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 203/582 (34%), Positives = 328/582 (56%), Gaps = 38/582 (6%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           A ++FD + E +++ W  M  G+   +    A  +++ M+   + P+++T   +LK+C  
Sbjct: 42  AISVFDTIQEPNLLIWNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAK 101

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA-----------------------TCC 161
            K       +HG  +K G +  IYV  SL+ +YA                       T  
Sbjct: 102 SKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTAL 161

Query: 162 IS-------MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLL-EGVEMN 213
           I+       +++A+ +F+++  K+ VSW  +I+GY  +GN    L +FKEM++   V  +
Sbjct: 162 IAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPD 221

Query: 214 PYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFD 273
             +    V ACA +  +  G+ +H+ +  HGF SNL ++N+++D+Y +F  +  A + FD
Sbjct: 222 ESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFD 281

Query: 274 EMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSC 332
            +  KD+I+WNT+I GY       E L +F +M     +PN  T  SI+ ACA L A+  
Sbjct: 282 GLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDI 341

Query: 333 GQQVHAGIVRR--GLDGNLA-LANALIDMYAKCGNISDSQKIF-SEMSDRDLVTWTSMMI 388
           G+ +H  I ++  G+  N++ L  +LIDMYAKCG+I  +Q++F S MS+R L TW +M+ 
Sbjct: 342 GRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMIS 401

Query: 389 GYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVN 447
           G+  HG    A ++F  M  +G+ PD I F+ +L+ACSH+G++D G   F+SM   Y + 
Sbjct: 402 GFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEIT 461

Query: 448 PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALR 507
           P  E YGC++DLLG +G  KEA E+I +MP +PD  +W  LL ACK H    LG+  A +
Sbjct: 462 PKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKK 521

Query: 508 VLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEV-GMSWIEVRDKVCGFI 566
           ++ ++P   G+Y++LSNIYAA G+W E AK R ++   G KK+V G S IE+   V  FI
Sbjct: 522 LIKIEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVVHEFI 581

Query: 567 ANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
             DK+    + +YG+LE +   + E  + PD   ++ ++E E
Sbjct: 582 IGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEE 623



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 106/354 (29%), Positives = 179/354 (50%), Gaps = 9/354 (2%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE-MVRNEV 108
           T LI  Y   G IE A+ LFDE+P +DVVSW  MI+GY     + +A  +F E M+   V
Sbjct: 159 TALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNV 218

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
            P+  T+ +V+ AC    S+     VH      G   ++ + N+L+D+Y+     ++ A 
Sbjct: 219 RPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFG-EVETAC 277

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            +F+ +  K+ +SW TLI GY H       L +F+EML  G   N  +    + ACA  G
Sbjct: 278 ELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLG 337

Query: 229 WVSFGKLIHAAVIK--HGFGSNL-PVMNSILDMYCRFDCLSDANQYFD-EMTEKDLITWN 284
            +  G+ IH  + K   G  +N+  +  S++DMY +   +  A Q FD  M+ + L TWN
Sbjct: 338 AIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWN 397

Query: 285 TIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR- 342
            +I+G+   G ++   ++FS+M+     P+  TF  +++AC+    L  G+ +   + R 
Sbjct: 398 AMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRG 457

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGH 395
             +   L     +ID+    G   +++++ + M  + D V W S++     HG+
Sbjct: 458 YEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGN 511



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 142/295 (48%), Gaps = 39/295 (13%)

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYC----RFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           + IHA +IK G  +    ++ +L+ +C     FD    A   FD + E +L+ WNT+  G
Sbjct: 5   RXIHAQMIKTGLHNTNYALSKLLE-FCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRG 63

Query: 290 YEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           +  S      L ++  M S    P+ +TF  ++ +CA       GQQ+H  +++ G D +
Sbjct: 64  HALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLD 123

Query: 349 LALANALIDMYAKCGNISD-------------------------------SQKIFSEMSD 377
           + +  +LI MYA+ G + D                               +QK+F E+  
Sbjct: 124 IYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPG 183

Query: 378 RDLVTWTSMMIGYGAHGHGKEAIELFDE-MVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
           +D+V+W +M+ GY   G+ KEA+ELF E M+ + VRPD    + V++AC+ +  ++ G  
Sbjct: 184 KDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRH 243

Query: 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
               +ND+    N +I   ++DL  + G V+ A EL   + +  D   W  L+G 
Sbjct: 244 VHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGL-WNKDVISWNTLIGG 297



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 140/283 (49%), Gaps = 11/283 (3%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y   G +E A  LFD +  +DV+SW  +I GYT  N + +A  +F EM+R+   PN
Sbjct: 263 LIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPN 322

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIY----VENSLMDVYATCCISMDNA 167
             T+ S+L AC  + ++     +H + I + L+G +     ++ SL+D+YA C   +D A
Sbjct: 323 DVTMLSILPACAHLGAIDIGRWIH-VYINKKLKGVVTNVSSLQTSLIDMYAKCG-DIDAA 380

Query: 168 RLVFN-DMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           + VF+  M  ++  +W  +I+G+A  G       +F  M + G+E +  +F   + AC+ 
Sbjct: 381 QQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSH 440

Query: 227 TGWVSFGKLIHAAVIK-HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLITWN 284
           +G +  G+ I  ++ + +     L     ++D+        +A +  + M  E D + W 
Sbjct: 441 SGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWC 500

Query: 285 TIIAGYEKSGSSECLNMFSK--MKSERFSPNCFTFTSIIAACA 325
           +++   +  G+ E    F+K  +K E  +   +   S I A A
Sbjct: 501 SLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSNIYAAA 543


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  357 bits (917), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 188/570 (32%), Positives = 324/570 (56%), Gaps = 7/570 (1%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           +G +  +  L+ +Y   G + +A   FDEM  RDV +W  M++G        +A  +F  
Sbjct: 101 RGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGR 160

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           MV   V  +A T+SSVL  C  +   + A  +H  A+K GL+  ++V N+++DVY    +
Sbjct: 161 MVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGM 220

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            ++  R VF+ M  ++ V+W ++I+G+   G     + +F  M   GV  +  +      
Sbjct: 221 -LEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLAS 279

Query: 223 ACASTGWVSFGKLIHAAVIKHGFG-SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
           A A  G +  G+ +H  +++ G+   ++   N+I+DMY +   +  A + FD M  +D +
Sbjct: 280 AIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAV 339

Query: 282 TWNTIIAGYEKSG-SSECLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           +WNT+I GY ++G +SE ++++  M K E   P   TF S++ A + L AL  G ++HA 
Sbjct: 340 SWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHAL 399

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
            ++ GL+ ++ +   +ID+YAKCG + ++  +F +   R    W +++ G G HGHG +A
Sbjct: 400 SIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKA 459

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVD 458
           + LF +M + G+ PD + F+++L ACSHAGLVD+G  +F  M   Y + P  + Y C+VD
Sbjct: 460 LSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVD 519

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518
           + GRAG++ +A++ I++MP KPD ++WG LLGAC+ H    +GK+A+  + +L P  +G 
Sbjct: 520 MFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDPKNVGY 579

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQY- 577
           Y+++SN+YA  GKW+   + R ++R    +K  G S IEV+  V  F + ++M  H Q+ 
Sbjct: 580 YVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQMNIHPQHE 639

Query: 578 -VYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
            +   L  L+  +    Y PD   ++ D+E
Sbjct: 640 EIQRELLDLLAKIRSLGYVPDYSFVLQDVE 669



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 9/180 (5%)

Query: 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGL-DGNLALANALIDMYAKCGNISDSQKI 371
           + FTF  ++ A           Q+HA  +R GL  G+   + AL+  Y + G + D+ + 
Sbjct: 70  DAFTFPPLLRAAQ---GPGTAAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRA 126

Query: 372 FSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLV 431
           F EM  RD+  W +M+ G   +    EA+ LF  MV  GV  D +   +VL  C   G  
Sbjct: 127 FDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLG-- 184

Query: 432 DEGLKYFKSMNDYNVNPNKEIYGC--VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           D  L     +       + E++ C  ++D+ G+ G ++E  ++   M  + D   W  ++
Sbjct: 185 DRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSR-DLVTWNSII 243


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  357 bits (917), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 182/494 (36%), Positives = 294/494 (59%), Gaps = 3/494 (0%)

Query: 117 SVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW 176
           S++ AC   +SL +A  +H         GS++++NSL+ +Y  C    D AR VF+ M  
Sbjct: 69  SLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVAD-ARRVFDGMPA 127

Query: 177 KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLI 236
           ++  SWT+LI GYA +      LG+   ML    + N ++F+  ++A  ++     G+ I
Sbjct: 128 RDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQI 187

Query: 237 HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS 296
           HA  +K+ +  ++ V +++LDMY R   +  A   FD++  K+ ++WN +IAG+ + G  
Sbjct: 188 HALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDG 247

Query: 297 EC-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
           E  L MF++M+   F    FT++S+ +A A + AL  G+ VHA +++ G   +  + N +
Sbjct: 248 ETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTI 307

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           +DMYAK G++ D++K+F  +  +D+VTW SM+  +  +G G+EA+  F+EM K GV  ++
Sbjct: 308 LDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQ 367

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKS 475
           I F+++LTACSH GLV EG +YF  M +YN+ P  + Y  VVDLLGRAG + +A   I  
Sbjct: 368 ITFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFK 427

Query: 476 MPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEF 535
           MP KP  +VWG LLG+C+ H+   +G+ AA  V +L P+  G  ++L NIYA+ G+W+  
Sbjct: 428 MPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAA 487

Query: 536 AKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYE 595
           A+ RK+M+  G KKE   SW+E+ + V  F+AND     ++ +Y   E +   + +  Y 
Sbjct: 488 ARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYV 547

Query: 596 PDID-CLIHDLEGE 608
           P+ D  L+H  E E
Sbjct: 548 PNTDYVLLHVDEQE 561



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 108/326 (33%), Positives = 172/326 (52%), Gaps = 2/326 (0%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   L  +LI  Y   G + +AR +FD MP RD+ SWT +IAGY   +  ++A  +   M
Sbjct: 97  GSVFLDNSLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGM 156

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           +R    PN FT +S+LKA     S      +H + +K      +YV ++L+D+YA C   
Sbjct: 157 LRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCG-R 215

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           MD A  VF+ ++ KN VSW  LI G+A  G+G   L +F EM   G E   +++S    A
Sbjct: 216 MDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSA 275

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
            A  G +  GK +HA +IK G   +  V N+ILDMY +   + DA + FD + +KD++TW
Sbjct: 276 IAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTW 335

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N+++  + + G   E +  F +M+      N  TF SI+ AC+    +  G+Q    +  
Sbjct: 336 NSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKE 395

Query: 343 RGLDGNLALANALIDMYAKCGNISDS 368
             L+  +     ++D+  + G ++D+
Sbjct: 396 YNLEPEIDHYVTVVDLLGRAGLLNDA 421



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 147/286 (51%), Gaps = 2/286 (0%)

Query: 213 NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYF 272
            P  +   + ACA    +   + IHA +    F  ++ + NS++ +YC+   ++DA + F
Sbjct: 63  TPRLYHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVF 122

Query: 273 DEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALS 331
           D M  +D+ +W ++IAGY ++    E L +   M   RF PN FTF S++ A    A+  
Sbjct: 123 DGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSG 182

Query: 332 CGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG 391
            G+Q+HA  V+     ++ + +AL+DMYA+CG +  +  +F ++  ++ V+W +++ G+ 
Sbjct: 183 IGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFA 242

Query: 392 AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE 451
             G G+  + +F EM ++G       + +V +A +  G +++G      M       +  
Sbjct: 243 RKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAF 302

Query: 452 IYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
           +   ++D+  ++G + +A ++   +  K D   W  +L A  ++ L
Sbjct: 303 VGNTILDMYAKSGSMIDARKVFDRVD-KKDVVTWNSMLTAFAQYGL 347



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 106/225 (47%), Gaps = 13/225 (5%)

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           + S+I ACA   +L   + +HA +      G++ L N+LI +Y KCG ++D++++F  M 
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMP 126

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
            RD+ +WTS++ GY  +    EA+ L   M++   +P+   F ++L A   +     G +
Sbjct: 127 ARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ 186

Query: 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR 496
                  Y+ + +  +   ++D+  R GR+  A  +   +  K   S W  L+       
Sbjct: 187 IHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVS-WNALIAGFAR-- 243

Query: 497 LPNLGKLAALRVLDLKPN-MMGTYIILSNIYAA--------EGKW 532
               G+   L   +++ N    T+   S++++A        +GKW
Sbjct: 244 -KGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKW 287


>gi|225433310|ref|XP_002282466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Vitis vinifera]
          Length = 625

 Score =  357 bits (917), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 192/566 (33%), Positives = 329/566 (58%), Gaps = 13/566 (2%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S+LAT LI +Y        +R +FD +  ++V  W  +I GY     +N+A+ +F +M  
Sbjct: 58  SLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCS 117

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           ++V P+ FTLS++ K    + +L +   +HG +I+ G      V NS+M +Y  C  + +
Sbjct: 118 SDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCG-NFE 176

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGN---GYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            +R VF++M  +N  SW  LI GYA SGN           K+M ++ V  + Y+ S  + 
Sbjct: 177 ESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLP 236

Query: 223 AC-ASTGWVSFGKLIHAAVIKH----GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE 277
            C    G   +G+ +H  ++K+    G  S++ +   ++DMY R + +    + FD M  
Sbjct: 237 LCDGDKGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKC 296

Query: 278 KDLITWNTIIAGYEKSGSS-ECLNMFSKMKS-ERFSPNCFTFTSIIAACATLAALSCGQQ 335
           +++ +W  +I GY ++G S E L++F  M+  +   PN  +  S++ AC++ + L  G+Q
Sbjct: 297 RNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGRQ 356

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHG 394
           +H   VR+ L+  ++L NALIDMY+KCG++  ++++F + S  +D ++W+SM+ GYG HG
Sbjct: 357 IHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHG 416

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS-MNDYNVNPNKEIY 453
            G+EAI L+D+M+++G+RPD I  + +L+ACS +GLV+EGL  + S +NDY + P  EI+
Sbjct: 417 KGQEAILLYDKMLQAGIRPDMITTVGILSACSRSGLVNEGLNIYSSVINDYGIEPTLEIF 476

Query: 454 GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513
            C+VD+LGRAG++  A + IK+MP +P  SVWG L+     H    + +LA   ++ L+P
Sbjct: 477 ACIVDMLGRAGQLDPALDFIKAMPVEPGPSVWGALVSCSIIHGDLEMQELAYRFLIQLEP 536

Query: 514 NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGS 573
                Y+ +SN+YA+  +W+  A+ R++M+    +K  G SWI + +K   F   DK   
Sbjct: 537 ENPSNYVSISNLYASSRRWDAVAEVRRMMKDKRLRKVPGCSWISINNKTHCFYVADKAHP 596

Query: 574 HTQYVYGVLEMLIRHMNETAYEPDID 599
               +Y +L+ L+  MN+    P ++
Sbjct: 597 SATSIYNMLDDLLLTMNDAICSPHLE 622



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 97/237 (40%), Gaps = 14/237 (5%)

Query: 309 RFSPNCFTFTSIIAACATL------AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362
           R+  + F F   +A   +L       +L   +Q H+ I+  GL  N  LA  LI  YA C
Sbjct: 12  RYYASAFEFDPSLALLQSLHFSVTHKSLKLTRQSHSRILSLGLSQNSLLATKLIFAYAIC 71

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
            +   S+ +F  +  +++  W S++ GY  +    EA +LF++M  S V PD      + 
Sbjct: 72  QHPYHSRLVFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLS 131

Query: 423 TACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDE 482
              S  G +  G              +  +   ++ +  + G  +E+ ++   M  +   
Sbjct: 132 KVSSELGALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSG 191

Query: 483 SVWGPLL------GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWE 533
           S W  L+      G C   R      +  +++ +++P+      +L      +GKW+
Sbjct: 192 S-WNVLIAGYAVSGNCN-FREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDKGKWD 246


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  357 bits (917), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 195/571 (34%), Positives = 324/571 (56%), Gaps = 8/571 (1%)

Query: 45  PSILAT-NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           PS+  + +L+ +Y   G I EA  +FDEM ERDV +W  M++G        +A  +F  M
Sbjct: 101 PSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRM 160

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           V   V  +  T+SSVL  C  +     A ++H  A+K GL+  ++V N+L+DVY    + 
Sbjct: 161 VGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGM- 219

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           ++ A+ VF+ M+ ++ V+W ++I+G    G     L +F+ M   GV  +  +      A
Sbjct: 220 LEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASA 279

Query: 224 CASTGWVSFGKLIHAAVIKHGFG-SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
            A  G     K +H  V++ G+   ++   N+I+DMY +   +  A + FD M  +D ++
Sbjct: 280 IAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVS 339

Query: 283 WNTIIAGYEKSG-SSECLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           WNT+I GY ++G ++E +  +  M K E       TF S++ A + L AL  G ++HA  
Sbjct: 340 WNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALS 399

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           ++ GL+ ++ +   LID+YAKCG ++++  +F +M  R    W +++ G G HGHG EA+
Sbjct: 400 IKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEAL 459

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDL 459
            LF  M + G++PD + F+++L ACSHAGLVD+G  +F  M   Y++ P  + Y C+ D+
Sbjct: 460 TLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADM 519

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
           LGRAG++ EA+  I++MP KPD +VWG LLGAC+ H    +GK+A+  + +L P  +G Y
Sbjct: 520 LGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYY 579

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQY-- 577
           +++SN+YA  GKW+   + R ++R    +K  G S IEV+  V  F + ++   H Q+  
Sbjct: 580 VLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQTEPHPQHEE 639

Query: 578 VYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           +   L  L+  +    Y  D   ++ D+E +
Sbjct: 640 IQAELRSLLAKIRSVGYVSDYSFVLQDVEDD 670



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 98/188 (52%), Gaps = 9/188 (4%)

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL-DGNLALANALIDMYAKCGNISDS 368
           F P+ FTF S+I A  + A+ +   Q+HA  +R GL   ++  + +L+  Y + G IS++
Sbjct: 66  FRPDGFTFPSLIRAAPSNASAA---QLHACALRLGLVRPSVFTSGSLVHAYLRFGRISEA 122

Query: 369 QKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHA 428
            K+F EMS+RD+  W +M+ G   +    EA+ LF  MV  GV  D +   +VL  C   
Sbjct: 123 YKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLL 182

Query: 429 GLVDEGLKYFKSMNDYNVNPNKEIYGC--VVDLLGRAGRVKEAYELIKSMPFKPDESVWG 486
           G  D+ L     +       +KE++ C  ++D+ G+ G ++EA  +   M  + D   W 
Sbjct: 183 G--DQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECR-DLVTWN 239

Query: 487 PLLGACKE 494
            ++  C++
Sbjct: 240 SIISGCEQ 247


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  357 bits (917), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 186/562 (33%), Positives = 315/562 (56%), Gaps = 5/562 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           ++ +Y   G I   R  FDEMP  D+VSW  +IA Y      ++ W  F  M+   +NP 
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPG 60

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
              +S  L AC   + ++    +    +  G+E    V+ +L+ +Y       D A  VF
Sbjct: 61  EVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAAS-VF 119

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
             M  ++ V+W+ ++  YA +G+    LG+F++M L+GV  N  +    + ACAS G + 
Sbjct: 120 LRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLR 179

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            G L+H  V   G  S + V  +++++Y +   +  A + F ++ EK+++ W+ I A Y 
Sbjct: 180 SGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYA 239

Query: 292 KSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVH--AGIVRRGLDGN 348
           ++  + + + +  +M  E   PN  TF S++ ACA +AAL  G+++H    ++  GL+ +
Sbjct: 240 RNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLESD 299

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           + +  AL++MY+KCGN++ +  +F +++  DLV W S++     HG  ++A+ELF+ M  
Sbjct: 300 VYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRL 359

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS-MNDYNVNPNKEIYGCVVDLLGRAGRVK 467
            G++P  I F +VL ACSHAG++D+G K+F S + D+ + P  E +GC+VDLLGRAG + 
Sbjct: 360 EGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIV 419

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527
           ++ +L+  MPF+P    W   LGAC+ +R  +    AA  +  L P     Y++LSN+YA
Sbjct: 420 DSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDRAIWAAENLFQLDPRKRAPYVLLSNMYA 479

Query: 528 AEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIR 587
             G+W + A+ R+ M+   + KE G SWIEV+D+V  FI+ D        ++  L+ L +
Sbjct: 480 KAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIHAELQRLTK 539

Query: 588 HMNETAYEPDIDCLIHDLEGET 609
            M E  Y PD + ++HD++ E 
Sbjct: 540 LMKEAGYVPDTEMVLHDVKQEV 561



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 112/438 (25%), Positives = 199/438 (45%), Gaps = 42/438 (9%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           SI+ T L+  Y   G   +A ++F  M  RDVV+W+ M+A Y       +A  +F +M  
Sbjct: 96  SIVQTALVSMYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDL 155

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           + V PN  TL S L AC  +  L + AL+H     +G++  + V  +L+++Y  C   ++
Sbjct: 156 DGVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCG-RIE 214

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A   F  +  KN V+W+ +   YA +      + V   M LEG+  N  +F   + ACA
Sbjct: 215 AAVEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACA 274

Query: 226 STGWVSFGKLIH--AAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           +   +  G+ IH    V+  G  S++ V+ ++++MY +   L+ A   FD++   DL+ W
Sbjct: 275 AIAALKQGRRIHERTQVLGGGLESDVYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLW 334

Query: 284 NTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV- 341
           N++IA   + G +E  L +F +M+ E   P   TFTS++ AC+    L  G++     + 
Sbjct: 335 NSLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIG 394

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
             G+         ++D+  + G I DS+ +   M                          
Sbjct: 395 DHGIFPEAEHFGCMVDLLGRAGWIVDSEDLLLHMP------------------------- 429

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEI-YGCVVDLL 460
                      P  + +MA L AC     +D  +  + + N + ++P K   Y  + ++ 
Sbjct: 430 ---------FEPHPVAWMAFLGACRTYRNMDRAI--WAAENLFQLDPRKRAPYVLLSNMY 478

Query: 461 GRAGRVKEAYELIKSMPF 478
            +AGR  +   + ++M  
Sbjct: 479 AKAGRWSDVARMRQAMQL 496


>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
 gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
          Length = 815

 Score =  357 bits (917), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 196/588 (33%), Positives = 324/588 (55%), Gaps = 10/588 (1%)

Query: 29  VKKSSIQSDPPLIPKGPSI---LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIA 85
           V K   Q+   ++  G  +   +   L+ SYF  G ++ AR LF EM   D VS+ VMI 
Sbjct: 155 VAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLDSARRLFLEMCGWDSVSFNVMIT 214

Query: 86  GYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEG 145
           GY +   + +A  +FVEM      P+ FT ++V+ A  G+   +    +HG  +K     
Sbjct: 215 GYANNGLNEEAIELFVEMQNLGFKPSDFTFAAVISASVGLDDTAFGQQIHGFVVKTSFIR 274

Query: 146 SIYVENSLMDVYATC-CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKE 204
           +++V N+ +D Y+   C+  +  R +FN+M   + VS+  +IT YA  G     + +F+E
Sbjct: 275 NVFVGNAFLDFYSKHDCV--NEVRKLFNEMPELDGVSYNVIITAYAWVGKVKESIDLFQE 332

Query: 205 MLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264
           +     +   + F   +   AS+  +  G+ +HA V+      +  V NS++DMY +   
Sbjct: 333 LQFTTFDRKNFPFPTMLSIAASSLDLQMGRQLHAQVVVSMADPDFRVSNSLVDMYAKCGK 392

Query: 265 LSDANQYFDEMTEKDLITWNTIIAGYEKSGSSEC-LNMFSKMKSERFSPNCFTFTSIIAA 323
             +A++ F  ++ +  + W  +I+   + G  E  L +F +M+    S +  TF  ++ A
Sbjct: 393 FEEADRIFLRLSSRSTVPWTAMISANVQRGLHENGLKLFYEMRRANVSADQATFACVLKA 452

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTW 383
            A LA++  G+Q+H+ ++R G   N+    AL+DMYA C +I D+ K F EMS+R++VTW
Sbjct: 453 SANLASILLGKQLHSCVIRSGF-MNVYSGCALLDMYANCASIKDAIKTFEEMSERNVVTW 511

Query: 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND 443
            +++  Y  +G GK  ++ F+EM+ SG +PD + F+ +LTACSH  LV+EGLKYF  M+ 
Sbjct: 512 NALLSAYAQNGDGKGTLKSFEEMIMSGYQPDSVSFLCILTACSHCRLVEEGLKYFNDMSG 571

Query: 444 -YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGK 502
            YN+ P +E Y  +VD L R+GR  EA +L+  MPF+PDE VW  +L +C+ H+   L +
Sbjct: 572 VYNLAPKREHYTAMVDALCRSGRFDEAEKLMGQMPFEPDEIVWTSVLNSCRIHKNYALAR 631

Query: 503 LAALRVLDLKP-NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDK 561
            AA ++ ++K       Y+ +SNI+A  G+W+   K +K MR  G +K    SW+E++ K
Sbjct: 632 KAAGQLFNMKVLRDAAPYVTMSNIFAEAGQWDSVVKVKKAMRDRGVRKLPAYSWVEIKHK 691

Query: 562 VCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGET 609
           V  F AND        +   +EML   M +  Y+PDI C   +++ E+
Sbjct: 692 VHVFSANDDKHPQQLEILRKIEMLAEQMEKEGYDPDISCAHQNVDKES 739



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 136/464 (29%), Positives = 231/464 (49%), Gaps = 28/464 (6%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P   S     +I  Y   G +  AR +FD+  ER VV+WT MI  Y+  N    A+ +F
Sbjct: 69  MPNRNSFSIDIIISGYVKSGNLTVARRIFDDTDERTVVAWTTMIGAYSKSNRFGDAFKLF 128

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
            EM R+   P+  T  ++L  C  ++        H   +K G   +  V N+L+D Y   
Sbjct: 129 AEMHRSGSQPDYVTYITLLTGCNDLEVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFKT 188

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
              +D+AR +F +M   + VS+  +ITGYA++G     + +F EM   G + + ++F+  
Sbjct: 189 G-GLDSARRLFLEMCGWDSVSFNVMITGYANNGLNEEAIELFVEMQNLGFKPSDFTFAAV 247

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           + A       +FG+ IH  V+K  F  N+ V N+ LD Y + DC+++  + F+EM E D 
Sbjct: 248 ISASVGLDDTAFGQQIHGFVVKTSFIRNVFVGNAFLDFYSKHDCVNEVRKLFNEMPELDG 307

Query: 281 ITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           +++N II  Y   G   E +++F +++   F    F F ++++  A+   L  G+Q+HA 
Sbjct: 308 VSYNVIITAYAWVGKVKESIDLFQELQFTTFDRKNFPFPTMLSIAASSLDLQMGRQLHAQ 367

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
           +V    D +  ++N+L+DMYAKCG   ++ +IF  +S R  V WT+M+      G  +  
Sbjct: 368 VVVSMADPDFRVSNSLVDMYAKCGKFEEADRIFLRLSSRSTVPWTAMISANVQRGLHENG 427

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACS-----------HAGLVDEGLKYFKSMNDYNVNP 448
           ++LF EM ++ V  D+  F  VL A +           H+ ++  G      MN Y+   
Sbjct: 428 LKLFYEMRRANVSADQATFACVLKASANLASILLGKQLHSCVIRSGF-----MNVYS--- 479

Query: 449 NKEIYGC-VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
                GC ++D+      +K+A +  + M  + +   W  LL A
Sbjct: 480 -----GCALLDMYANCASIKDAIKTFEEMS-ERNVVTWNALLSA 517



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 31/172 (18%)

Query: 336 VHAGIVRRGLD----------------GNLALANALIDM---------------YAKCGN 364
           + A IV+ G D                G L  A  L+D                Y K GN
Sbjct: 30  IDARIVKTGFDPITSRFNFMIKDLSERGQLCQARQLLDQMPNRNSFSIDIIISGYVKSGN 89

Query: 365 ISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTA 424
           ++ +++IF +  +R +V WT+M+  Y       +A +LF EM +SG +PD + ++ +LT 
Sbjct: 90  LTVARRIFDDTDERTVVAWTTMIGAYSKSNRFGDAFKLFAEMHRSGSQPDYVTYITLLTG 149

Query: 425 CSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
           C+   +  E  +    +     + N  +   ++D   + G +  A  L   M
Sbjct: 150 CNDLEVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLDSARRLFLEM 201


>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
 gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
          Length = 693

 Score =  357 bits (916), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 190/536 (35%), Positives = 305/536 (56%), Gaps = 6/536 (1%)

Query: 64  EARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACK 123
           +A  LFDE P+RDV  W  +I+ Y        A   F +M      PN+ T + V+ +C 
Sbjct: 159 DAIKLFDEFPQRDVGCWNAVISCYFKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCT 218

Query: 124 GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNARLVFNDMKWKNDVSW 182
            + +L     VH   I+  +    +V ++L+D+Y  C C+ M  A+ VF  +  KN ++W
Sbjct: 219 RLLNLERGKEVHRELIERRILLDAFVLSALVDMYGKCGCLEM--AKEVFEKIPRKNAITW 276

Query: 183 TTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIK 242
             +ITGY+  G+    + +   M  EG +    + +  + A + +  +  GK IH  +++
Sbjct: 277 NAMITGYSLKGDSRSCIELLMRMNDEGTKPTLMTLTSIIYASSRSVQLRHGKFIHGYILR 336

Query: 243 HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNM 301
           +    ++ +  S++D Y +   +S A   F  +++ ++++WN +I+G+   G+  + L++
Sbjct: 337 NRIDVDIFIDVSLIDFYFKCGYVSSAETIFRTISKNEVVSWNVMISGHVMVGNHIQALHI 396

Query: 302 FSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK 361
           +  MK     P+  TF+S ++AC+ LAAL  G+++H  I+   L+ N  +  AL+DMYAK
Sbjct: 397 YDNMKEHHVKPDALTFSSTLSACSQLAALDKGRELHYCIINHKLEANEIVMGALLDMYAK 456

Query: 362 CGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAV 421
           CG++ +++K+F ++  RDLV+WTSM+  YG+HG   EA+ LFDEM K  VR D + F+AV
Sbjct: 457 CGDVDEARKLFHQLPKRDLVSWTSMIFAYGSHGQASEALRLFDEMQKLNVRADSVTFLAV 516

Query: 422 LTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELI-KSMPFK 479
           L+ACSHAGLVDEG  YF  M   Y++ P  E Y C++DLLGRAGR+ EAYE++ +S   +
Sbjct: 517 LSACSHAGLVDEGYMYFNEMVVQYDIKPGIEHYSCLIDLLGRAGRLHEAYEILQRSKETR 576

Query: 480 PDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFR 539
            D  +   L  AC  H    LG      ++++ P+   TYI+LSN+YA+  KW+E  K R
Sbjct: 577 SDIGLLSTLFSACLLHNNFVLGIQIGKMLIEVDPDDPSTYILLSNMYASVNKWDEVRKVR 636

Query: 540 KIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYE 595
           + M+ +G KK  G SWIE+  ++  F A DK       VY  L +L  HM +   E
Sbjct: 637 RKMKELGLKKSPGCSWIEINQRIHPFFAEDKSNPLADGVYECLNILGCHMEKNELE 692



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 137/468 (29%), Positives = 242/468 (51%), Gaps = 11/468 (2%)

Query: 47  ILATNLIKSYFDEGLIEEARTLF--DEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
           +L+ +LI  YF       A  +F  ++ P  DV  W  +++ YT+     +A  +F ++ 
Sbjct: 39  VLSKSLIGFYFSCHDYASAELVFQTNDCP-LDVSLWNALLSAYTNNFRFVEALQLFDQLN 97

Query: 105 RNE-VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
            N  V P+ +T   VLKAC G+  +     +H   +K GL   ++V +SLM++YA C   
Sbjct: 98  CNSYVRPDFYTYPVVLKACGGLGRVIYGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQF 157

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +D  +L F++   ++   W  +I+ Y   G     L  F +M   G E N  +F++ V +
Sbjct: 158 VDAIKL-FDEFPQRDVGCWNAVISCYFKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSS 216

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C     +  GK +H  +I+     +  V+++++DMY +  CL  A + F+++  K+ ITW
Sbjct: 217 CTRLLNLERGKEVHRELIERRILLDAFVLSALVDMYGKCGCLEMAKEVFEKIPRKNAITW 276

Query: 284 NTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N +I GY   G S  C+ +  +M  E   P   T TSII A +    L  G+ +H  I+R
Sbjct: 277 NAMITGYSLKGDSRSCIELLMRMNDEGTKPTLMTLTSIIYASSRSVQLRHGKFIHGYILR 336

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
             +D ++ +  +LID Y KCG +S ++ IF  +S  ++V+W  M+ G+   G+  +A+ +
Sbjct: 337 NRIDVDIFIDVSLIDFYFKCGYVSSAETIFRTISKNEVVSWNVMISGHVMVGNHIQALHI 396

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           +D M +  V+PD + F + L+ACS    +D+G +    + ++ +  N+ + G ++D+  +
Sbjct: 397 YDNMKEHHVKPDALTFSSTLSACSQLAALDKGRELHYCIINHKLEANEIVMGALLDMYAK 456

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD 510
            G V EA +L   +P K D   W  ++ A   H   +     ALR+ D
Sbjct: 457 CGDVDEARKLFHQLP-KRDLVSWTSMIFAYGSHGQAS----EALRLFD 499



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 186/366 (50%), Gaps = 4/366 (1%)

Query: 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFND 173
           TL S L+ C   K L    L+H      G + +I +  SL+  Y +C     +A LVF  
Sbjct: 5   TLLSALRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCH-DYASAELVFQT 63

Query: 174 MKWKNDVS-WTTLITGYAHSGNGYGGLGVFKEMLLEG-VEMNPYSFSIAVRACASTGWVS 231
                DVS W  L++ Y ++      L +F ++     V  + Y++ + ++AC   G V 
Sbjct: 64  NDCPLDVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGRVI 123

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
           +G+ IH  ++K G   ++ V +S+++MY + D   DA + FDE  ++D+  WN +I+ Y 
Sbjct: 124 YGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYF 183

Query: 292 KSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           K G +E  L  F KMK   F PN  TFT ++++C  L  L  G++VH  ++ R +  +  
Sbjct: 184 KDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLDAF 243

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           + +AL+DMY KCG +  ++++F ++  ++ +TW +M+ GY   G  +  IEL   M   G
Sbjct: 244 VLSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDEG 303

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470
            +P  +   +++ A S +  +  G      +    ++ +  I   ++D   + G V  A 
Sbjct: 304 TKPTLMTLTSIIYASSRSVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYVSSAE 363

Query: 471 ELIKSM 476
            + +++
Sbjct: 364 TIFRTI 369



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 143/275 (52%), Gaps = 8/275 (2%)

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK- 278
           A+R C S+  +  GKLIH  +   GF SN+ +  S++  Y  F C   A+      T   
Sbjct: 9   ALRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFY--FSCHDYASAELVFQTNDC 66

Query: 279 --DLITWNTIIAGYEKSGS-SECLNMFSKMKSERF-SPNCFTFTSIIAACATLAALSCGQ 334
             D+  WN +++ Y  +    E L +F ++    +  P+ +T+  ++ AC  L  +  G+
Sbjct: 67  PLDVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGRVIYGR 126

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
           ++H  +++ GL  ++ + ++L++MYAKC    D+ K+F E   RD+  W +++  Y   G
Sbjct: 127 RIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDG 186

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG 454
             + A++ FD+M + G  P+ + F  V+++C+    ++ G +  + + +  +  +  +  
Sbjct: 187 KAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLDAFVLS 246

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
            +VD+ G+ G ++ A E+ + +P + +   W  ++
Sbjct: 247 ALVDMYGKCGCLEMAKEVFEKIP-RKNAITWNAMI 280


>gi|413948598|gb|AFW81247.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 788

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 202/554 (36%), Positives = 310/554 (55%), Gaps = 14/554 (2%)

Query: 45  PSI-LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           PS+ ++T L  +Y   G ++ A  + DEMP R+VVSWT ++A        + A   F EM
Sbjct: 87  PSVFVSTALADAYAKAGRLDLALQVLDEMPSRNVVSWTTLVASLARAGRRHDALRRFAEM 146

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
             + V  ++   S+ L AC     L     VH +  K GL+   +V N+L  +YA C   
Sbjct: 147 RASGVACDSHACSAALTACADAGLLPRGREVHALCAKLGLDAVPFVANALAALYARCG-D 205

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE----GVEMNPYSFSI 219
           +D A      M   +    TTLI  Y  +G     +  F  ML +        N Y+FS 
Sbjct: 206 VDRALAAVGRMGSHDVAVCTTLIASYVQTGRTEEAIEAFVRMLRDESSNSASPNEYTFSA 265

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
            + AC +      G+ +HA   + G      V NS++ +Y R   LS A+  F E   KD
Sbjct: 266 VIAACPNMDRAYLGEQLHAQAARRGLSHARSVANSLVKLYSRRGHLSAADAIFRESVVKD 325

Query: 280 LITWNTIIAGYEKSG-SSECLNMFSKMK--SERFSPNCFTFTSIIAACATLAALSCGQQV 336
           +++W+TII+GY + G + E   +FS+M+  S    PN FT  S+ + CA+ A+L  G+Q+
Sbjct: 326 VVSWSTIISGYTQEGLAEESFALFSEMRHHSSCPRPNEFTLASLFSVCASAASLDTGRQL 385

Query: 337 HAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHG 396
           HA  V  GL+ +  + +AL++MY K G++SD+  +FS  +  D+++WT+M++G+  HGH 
Sbjct: 386 HALAVAAGLEHHAMVRSALVNMYGKGGSMSDANVVFSNRTKDDVISWTAMIVGHAEHGHS 445

Query: 397 KEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGC 455
           KEA ELF+EM + G++PD + F+ VLTACSHAG ++ GL+Y  +MN  Y + P KE YGC
Sbjct: 446 KEAFELFEEMCRIGLKPDHVTFIGVLTACSHAGELELGLRYLNAMNKSYGLEPEKEHYGC 505

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514
           VVDLL RAGR+ EA ELI  +  +  D  VW  LL AC        GK+AA R+++ +P 
Sbjct: 506 VVDLLARAGRIHEAEELIGRIAAEERDGVVWTSLLRACAARGAEETGKIAAERMMEAEPW 565

Query: 515 MMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEV--RDKVCG-FIANDKM 571
             G +++++N+YA++G W E A+ R +M+  G  K  G S +EV   D+  G F++ D+ 
Sbjct: 566 GSGAHVVMANLYASKGLWCEAAQERHLMKQKGVLKGAGWSSVEVGGDDRGVGVFVSGDRT 625

Query: 572 GSHTQYVYGVLEML 585
                 +Y +LE++
Sbjct: 626 NPQDSAIYMMLELM 639



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 128/444 (28%), Positives = 217/444 (48%), Gaps = 22/444 (4%)

Query: 72  MPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP----NAFTLSSVLKACKGMKS 127
           MP RD V++  +++GY +      A  +F     +   P    + F LS VLKAC    +
Sbjct: 1   MPRRDEVAYATLLSGYAAAADFPGAMALFSRFRASSSQPHDAADPFILSPVLKACASAAA 60

Query: 128 LSN---------AALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKN 178
            +          AA +H  A++     S++V  +L D YA     +D A  V ++M  +N
Sbjct: 61  SAGLLPLPHAAAAAALHAFAVRSSSLPSVFVSTALADAYAKAG-RLDLALQVLDEMPSRN 119

Query: 179 DVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHA 238
            VSWTTL+   A +G  +  L  F EM   GV  + ++ S A+ ACA  G +  G+ +HA
Sbjct: 120 VVSWTTLVASLARAGRRHDALRRFAEMRASGVACDSHACSAALTACADAGLLPRGREVHA 179

Query: 239 AVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSE 297
              K G  +   V N++  +Y R   +  A      M   D+    T+IA Y ++G + E
Sbjct: 180 LCAKLGLDAVPFVANALAALYARCGDVDRALAAVGRMGSHDVAVCTTLIASYVQTGRTEE 239

Query: 298 CLNMFSKM----KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353
            +  F +M     S   SPN +TF+++IAAC  +     G+Q+HA   RRGL    ++AN
Sbjct: 240 AIEAFVRMLRDESSNSASPNEYTFSAVIAACPNMDRAYLGEQLHAQAARRGLSHARSVAN 299

Query: 354 ALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV--KSGV 411
           +L+ +Y++ G++S +  IF E   +D+V+W++++ GY   G  +E+  LF EM    S  
Sbjct: 300 SLVKLYSRRGHLSAADAIFRESVVKDVVSWSTIISGYTQEGLAEESFALFSEMRHHSSCP 359

Query: 412 RPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471
           RP+     ++ + C+ A  +D G +         +  +  +   +V++ G+ G + +A  
Sbjct: 360 RPNEFTLASLFSVCASAASLDTGRQLHALAVAAGLEHHAMVRSALVNMYGKGGSMSDA-N 418

Query: 472 LIKSMPFKPDESVWGPLLGACKEH 495
           ++ S   K D   W  ++    EH
Sbjct: 419 VVFSNRTKDDVISWTAMIVGHAEH 442


>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 730

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 196/599 (32%), Positives = 321/599 (53%), Gaps = 47/599 (7%)

Query: 34  IQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCH 93
            +  P ++PK        L+  Y +  L+ +A T+ +       + W ++I+ Y     H
Sbjct: 124 FEQHPIIVPK--------LVTFYTNFDLLADAHTITENSNILHPLPWNLLISSYVRNGLH 175

Query: 94  NQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSL 153
            +A + + +M    + P+ FT  SVLKAC     ++    +H       L  +++V NSL
Sbjct: 176 GEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASCLGWNLFVHNSL 235

Query: 154 MDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMN 213
           + +YA     +  AR +F +M  ++DVSW T+I+GYA  G       +F +M +EG+E+N
Sbjct: 236 VSMYAKTG-ELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFGKMRVEGIELN 294

Query: 214 PYSFS-----------------------------------IAVRACASTGWVSFGKLIHA 238
             +++                                   I + AC+  G +  G+ IH 
Sbjct: 295 IITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACSHIGAIKLGREIHG 354

Query: 239 AVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSEC 298
           + I+  +     V N+++ MY R   L  A   F     K++ITWN++++GY     SE 
Sbjct: 355 SAIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTKNIITWNSMLSGYTHMDRSEE 414

Query: 299 LN-MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-GLDGNLALANALI 356
            + +F +M      PN  T  SI+  CA +A L  G++ H  I+RR G    L L N+L+
Sbjct: 415 ASFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRAGFKDYLLLWNSLV 474

Query: 357 DMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI 416
           DMYA+ G + +++++F  +S RD VT+TS++ GYG  G G+EA++LFDEM K  ++PD +
Sbjct: 475 DMYARSGKVLEAKRLFDSISRRDEVTYTSLIAGYGIQGEGREALKLFDEMKKRHIKPDHV 534

Query: 417 VFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKS 475
             +AVL+ACSH+GLV EG+K F+ M + Y + P  E + C+VDL GRAG + +A E+I  
Sbjct: 535 TMVAVLSACSHSGLVTEGIKLFELMPSAYGIIPRLEHFACMVDLFGRAGLLHKAKEMITR 594

Query: 476 MPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEF 535
           MP++P  ++W  LLGAC+ H    +G+ AA ++L+++P   G Y++++N+YAA G W + 
Sbjct: 595 MPYRPSSAMWATLLGACRIHGNAEIGEWAAEKLLEMRPENSGYYVLIANMYAAAGCWSKL 654

Query: 536 AKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAY 594
           AK R  MR +G +K  G +W++V      F+ +D    H   +Y +LE L   M +  Y
Sbjct: 655 AKVRTYMRDLGVRKAPGCAWVDVGSGFFPFLVDDTSKPHVNKLYPLLEGLTELMKDAEY 713



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/409 (25%), Positives = 187/409 (45%), Gaps = 49/409 (11%)

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTT 184
           +KSLS    +H + I  G E    +   L+  Y    +  D A  +  +    + + W  
Sbjct: 106 LKSLSQGKQLHTLIISLGFEQHPIIVPKLVTFYTNFDLLAD-AHTITENSNILHPLPWNL 164

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG 244
           LI+ Y  +G     L  +K+M  +G+  + +++   ++AC     ++FGK +HA++    
Sbjct: 165 LISSYVRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASC 224

Query: 245 FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFS 303
            G NL V NS++ MY +   LS A   F+ M E+D ++WNT+I+GY   G   E   +F 
Sbjct: 225 LGWNLFVHNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFG 284

Query: 304 KMKSERFSPNCFTFTSI-----------------------------------IAACATLA 328
           KM+ E    N  T+ +I                                   + AC+ + 
Sbjct: 285 KMRVEGIELNIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACSHIG 344

Query: 329 ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMI 388
           A+  G+++H   +R   DG   + NALI MY++C  +  +  +F     ++++TW SM+ 
Sbjct: 345 AIKLGREIHGSAIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTKNIITWNSMLS 404

Query: 389 GYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYF------KSMN 442
           GY      +EA  LF EM+ SG+ P+ +   ++L  C+    +  G ++           
Sbjct: 405 GYTHMDRSEEASFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRAGFK 464

Query: 443 DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
           DY +     ++  +VD+  R+G+V EA  L  S+  + DE  +  L+  
Sbjct: 465 DYLL-----LWNSLVDMYARSGKVLEAKRLFDSIS-RRDEVTYTSLIAG 507


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 182/494 (36%), Positives = 294/494 (59%), Gaps = 3/494 (0%)

Query: 117 SVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW 176
           S++ AC   +SL +A  +H         GS++++NSL+ +Y  C    D AR VF+ M  
Sbjct: 69  SLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVAD-ARRVFDGMPA 127

Query: 177 KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLI 236
           ++  SWT+LI GYA +      LG+   ML    + N ++F+  ++A  ++     G+ I
Sbjct: 128 RDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQI 187

Query: 237 HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS 296
           HA  +K+ +  ++ V +++LDMY R   +  A   FD++  K+ ++WN +IAG+ + G  
Sbjct: 188 HALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDG 247

Query: 297 EC-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
           E  L MF++M+   F    FT++S+ +A A + AL  G+ VHA +++ G   +  + N +
Sbjct: 248 ETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTI 307

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           +DMYAK G++ D++K+F  +  +D+VTW SM+  +  +G G+EA+  F+EM K GV  ++
Sbjct: 308 LDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQ 367

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKS 475
           I F+++LTACSH GLV EG +YF  M +YN+ P  + Y  VVDLLGRAG + +A   I  
Sbjct: 368 ITFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFK 427

Query: 476 MPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEF 535
           MP KP  +VWG LLG+C+ H+   +G+ AA  V +L P+  G  ++L NIYA+ G+W+  
Sbjct: 428 MPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAA 487

Query: 536 AKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYE 595
           A+ RK+M+  G KKE   SW+E+ + V  F+AND     ++ +Y   E +   + +  Y 
Sbjct: 488 ARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYV 547

Query: 596 PDID-CLIHDLEGE 608
           P+ D  L+H  E E
Sbjct: 548 PNTDYVLLHVDEQE 561



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 108/326 (33%), Positives = 172/326 (52%), Gaps = 2/326 (0%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   L  +LI  Y   G + +AR +FD MP RD+ SWT +IAGY   +  ++A  +   M
Sbjct: 97  GSVFLDNSLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGM 156

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           +R    PN FT +S+LKA     S      +H + +K      +YV ++L+D+YA C   
Sbjct: 157 LRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCG-R 215

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           MD A  VF+ ++ KN VSW  LI G+A  G+G   L +F EM   G E   +++S    A
Sbjct: 216 MDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSA 275

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
            A  G +  GK +HA +IK G   +  V N+ILDMY +   + DA + FD + +KD++TW
Sbjct: 276 IAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTW 335

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N+++  + + G   E +  F +M+      N  TF SI+ AC+    +  G+Q    +  
Sbjct: 336 NSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKE 395

Query: 343 RGLDGNLALANALIDMYAKCGNISDS 368
             L+  +     ++D+  + G ++D+
Sbjct: 396 YNLEPEIDHYVTVVDLLGRAGLLNDA 421



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 147/286 (51%), Gaps = 2/286 (0%)

Query: 213 NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYF 272
            P  +   + ACA    +   + IHA +    F  ++ + NS++ +YC+   ++DA + F
Sbjct: 63  TPRLYHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVF 122

Query: 273 DEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALS 331
           D M  +D+ +W ++IAGY ++    E L +   M   RF PN FTF S++ A    A+  
Sbjct: 123 DGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSG 182

Query: 332 CGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG 391
            G+Q+HA  V+     ++ + +AL+DMYA+CG +  +  +F ++  ++ V+W +++ G+ 
Sbjct: 183 IGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFA 242

Query: 392 AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE 451
             G G+  + +F EM ++G       + +V +A +  G +++G      M       +  
Sbjct: 243 RKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAF 302

Query: 452 IYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
           +   ++D+  ++G + +A ++   +  K D   W  +L A  ++ L
Sbjct: 303 VGNTILDMYAKSGSMIDARKVFDRVD-KKDVVTWNSMLTAFAQYGL 347



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 106/225 (47%), Gaps = 13/225 (5%)

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           + S+I ACA   +L   + +HA +      G++ L N+LI +Y KCG ++D++++F  M 
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMP 126

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
            RD+ +WTS++ GY  +    EA+ L   M++   +P+   F ++L A   +     G +
Sbjct: 127 ARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ 186

Query: 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR 496
                  Y+ + +  +   ++D+  R GR+  A  +   +  K   S W  L+       
Sbjct: 187 IHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVS-WNALIAGFAR-- 243

Query: 497 LPNLGKLAALRVLDLKPN-MMGTYIILSNIYAA--------EGKW 532
               G+   L   +++ N    T+   S++++A        +GKW
Sbjct: 244 -KGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKW 287


>gi|449445027|ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 833

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 190/524 (36%), Positives = 308/524 (58%), Gaps = 9/524 (1%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAW---TVFVEMVRNEV 108
           L+ +Y   G ++    +F+E  E++ VSW  +I G     C  + W     F  M+    
Sbjct: 302 LVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLA---CKGRCWDALNAFRMMIDAGA 358

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
            PN+ T+SS+L     ++       +HG +++ G E  I++ NSL+D+YA    S + A 
Sbjct: 359 QPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTE-AS 417

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            +F+++  +N VSW  +I  YA +      +    +M   G   N  +F+  + ACA  G
Sbjct: 418 TIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLG 477

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
           ++  GK IHA  ++ G  S+L V NS++DMY +  CL  A   F+  + KD +++N +I 
Sbjct: 478 FLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNT-SRKDEVSYNILII 536

Query: 289 GY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           GY E     + LN+FS+M+     P+  +F  +I+ACA LAAL  G++VH   +R  L  
Sbjct: 537 GYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYS 596

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           +L ++N+L+D Y KCG I  + ++F+++  +D+ +W +M++GYG  G  + AI +F+ M 
Sbjct: 597 HLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMR 656

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
              V+ D + ++AVL+ACSH GLV+ G +YF  M    + P +  Y C+VDLLGRAG V+
Sbjct: 657 DDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQRLEPTEMHYTCMVDLLGRAGFVE 716

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527
           EA +LI+ +P  PD ++WG LLGAC+ +    LG+ AA  + +LKP   G YI+LSNIYA
Sbjct: 717 EAAKLIQQLPIAPDANIWGALLGACRIYGNVELGRRAAEHLFELKPQHCGYYILLSNIYA 776

Query: 528 AEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKM 571
             G+W+E  K R++M+  G+KK  G SW+++ D+V  F+A +++
Sbjct: 777 ETGRWDEANKIRELMKSRGAKKNPGCSWVQIYDQVHAFVAEERV 820



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 129/444 (29%), Positives = 233/444 (52%), Gaps = 5/444 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV-RN 106
           +   L+  Y + G + +AR LFDEMPERDVVSW  +I   +    + +A   +  M+ R+
Sbjct: 196 VGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRS 255

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + PN  ++ S+L     ++       +H  ++K GL+  +   N+L+D Y  C  S+  
Sbjct: 256 VIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCG-SVKA 314

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
              VFN+   KN+VSW ++I G A  G  +  L  F+ M+  G + N  + S  +     
Sbjct: 315 LWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVE 374

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
                 GK IH   ++ G  +++ + NS++DMY +    ++A+  F  +  +++++WN +
Sbjct: 375 LECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAM 434

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           IA Y  +    E +    +M+     PN  TFT+++ ACA L  L  G+++HA  VR GL
Sbjct: 435 IANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGL 494

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             +L ++N+LIDMYAKCG +  ++ +F+  S +D V++  ++IGY       +++ LF E
Sbjct: 495 TSDLFVSNSLIDMYAKCGCLHSARNVFNT-SRKDEVSYNILIIGYSETDDCLQSLNLFSE 553

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M   G +PD + F+ V++AC++   + +G +        ++  +  +   ++D   + GR
Sbjct: 554 MRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKCGR 613

Query: 466 VKEAYELIKSMPFKPDESVWGPLL 489
           +  A  L   + FK D + W  ++
Sbjct: 614 IDIACRLFNQILFK-DVASWNTMI 636



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 127/509 (24%), Positives = 240/509 (47%), Gaps = 11/509 (2%)

Query: 22  IKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPE--RDVVS 79
           ++  LQ+ +  ++      +P+  S+ A+ LI +Y          +LF++  +  R    
Sbjct: 67  VQSLLQTKQVHALGILNGFLPRSVSLCAS-LILNYAKFQHPGSFCSLFNQTFQNCRTAFL 125

Query: 80  WTVMIAGYT-SFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMA 138
           W  +I  ++ ++N     +  +  MVR  V  +  T   VLK C     +     VHG+ 
Sbjct: 126 WNTLIRAHSIAWNGTFDGFETYNRMVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVV 185

Query: 139 IKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGG 198
            K G +  +YV N+L+ +Y  C   +++AR +F++M  ++ VSW T+I   + +G+    
Sbjct: 186 FKLGFDTDVYVGNTLLMLYGNCGF-LNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEA 244

Query: 199 LGVFKEMLLEGV-EMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILD 257
              +  M+L  V + N  S    +   A+       + IH   +K G  S +   N+++D
Sbjct: 245 RNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVD 304

Query: 258 MYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFT 316
            Y +   +    Q F+E  EK+ ++WN+II G    G   + LN F  M      PN  T
Sbjct: 305 AYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVT 364

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
            +SI+     L     G+++H   +R G + ++ +AN+LIDMYAK G+ +++  IF  + 
Sbjct: 365 ISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLD 424

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
            R++V+W +M+  Y  +    EAI    +M ++G  P+ + F  VL AC+  G +  G +
Sbjct: 425 RRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKE 484

Query: 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR 496
                    +  +  +   ++D+  + G +  A  +  +   + DE  +  L+    E  
Sbjct: 485 IHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNTS--RKDEVSYNILIIGYSETD 542

Query: 497 --LPNLGKLAALRVLDLKPNMMGTYIILS 523
             L +L   + +R+L  KP+++    ++S
Sbjct: 543 DCLQSLNLFSEMRLLGKKPDVVSFVGVIS 571



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 127/437 (29%), Positives = 212/437 (48%), Gaps = 51/437 (11%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A +LI  Y   G   EA T+F  +  R++VSW  MIA Y       +A    ++M    
Sbjct: 399 IANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETG 458

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
             PNA T ++VL AC  +  L     +H M ++ GL   ++V NSL+D+YA C   + +A
Sbjct: 459 ECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCG-CLHSA 517

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R VFN  + K++VS+  LI GY+ + +    L +F EM L G + +  SF   + ACA+ 
Sbjct: 518 RNVFNTSR-KDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANL 576

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  GK +H   +++   S+L V NS+LD Y +   +  A + F+++  KD+ +WNT+I
Sbjct: 577 AALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMI 636

Query: 288 AGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            GY   G  E  ++MF  M+ +    +  ++ ++++AC+           H G+V RG  
Sbjct: 637 LGYGMIGELETAISMFEAMRDDTVQYDLVSYIAVLSACS-----------HGGLVERGW- 684

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDL----VTWTSMMIGYGAHGHGKEAIEL 402
                                  + FSEM  + L    + +T M+   G  G  +EA +L
Sbjct: 685 -----------------------QYFSEMLAQRLEPTEMHYTCMVDLLGRAGFVEEAAKL 721

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK-EIYGCVVDLLG 461
             ++    + PD  ++ A+L AC   G V+ G +  + +  + + P     Y  + ++  
Sbjct: 722 IQQL---PIAPDANIWGALLGACRIYGNVELGRRAAEHL--FELKPQHCGYYILLSNIYA 776

Query: 462 RAGRVKEA---YELIKS 475
             GR  EA    EL+KS
Sbjct: 777 ETGRWDEANKIRELMKS 793



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 105/401 (26%), Positives = 194/401 (48%), Gaps = 34/401 (8%)

Query: 117 SVLKACKGMKSLSNAALVHGMAIKEG-LEGSIYVENSLMDVYAT-------CCI---SMD 165
           ++L  C  ++SL     VH + I  G L  S+ +  SL+  YA        C +   +  
Sbjct: 59  NLLTLCSKVQSLLQTKQVHALGILNGFLPRSVSLCASLILNYAKFQHPGSFCSLFNQTFQ 118

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNG-YGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           N R  F          W TLI  ++ + NG + G   +  M+  GV+++ ++F   ++ C
Sbjct: 119 NCRTAF---------LWNTLIRAHSIAWNGTFDGFETYNRMVRRGVQLDDHTFPFVLKLC 169

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           + +  +  G  +H  V K GF +++ V N++L +Y     L+DA + FDEM E+D+++WN
Sbjct: 170 SDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWN 229

Query: 285 TIIAGYEKSGS-SECLNM-FSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           TII     +G  +E  N  F  +      PN  +  S++   A L      +++H   V+
Sbjct: 230 TIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVK 289

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            GLD  +   NAL+D Y KCG++    ++F+E  +++ V+W S++ G    G   +A+  
Sbjct: 290 VGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNA 349

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVD-EGLKYFKSMNDYNVNPNKE----IYGCVV 457
           F  M+ +G +P+ +   ++L       LV+ E  K  K ++ +++    E    I   ++
Sbjct: 350 FRMMIDAGAQPNSVTISSILPV-----LVELECFKAGKEIHGFSMRMGTETDIFIANSLI 404

Query: 458 DLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLP 498
           D+  ++G   EA  +  ++  +   S W  ++     +RLP
Sbjct: 405 DMYAKSGHSTEASTIFHNLDRRNIVS-WNAMIANYALNRLP 444



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 84/180 (46%), Gaps = 5/180 (2%)

Query: 315 FTFTSIIAACATLAALSCGQQVHA-GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFS 373
           +   +++  C+ + +L   +QVHA GI+   L  +++L  +LI  YAK  +      +F+
Sbjct: 55  YIHINLLTLCSKVQSLLQTKQVHALGILNGFLPRSVSLCASLILNYAKFQHPGSFCSLFN 114

Query: 374 EMSD--RDLVTWTSMMIGYGAHGHGK-EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           +     R    W +++  +    +G  +  E ++ MV+ GV+ D   F  VL  CS +  
Sbjct: 115 QTFQNCRTAFLWNTLIRAHSIAWNGTFDGFETYNRMVRRGVQLDDHTFPFVLKLCSDSFD 174

Query: 431 VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490
           + +G++    +     + +  +   ++ L G  G + +A  L   MP + D   W  ++G
Sbjct: 175 ICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMP-ERDVVSWNTIIG 233


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 198/554 (35%), Positives = 311/554 (56%), Gaps = 6/554 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L  +LI  Y   G +  A  LF+ +P R    WT MI+ Y    C  +A  VF +M   +
Sbjct: 238 LNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFK 297

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSI-YVENSLMDVYATCCISMDN 166
           + PN  T+  VL AC  +  +     VHG  I+  ++  + ++  +LM++YA    ++ +
Sbjct: 298 MEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTG-NLRD 356

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
              VF  +K K  +SW TLI+ +  +G     L +F +M  +G+  + YS + ++ AC +
Sbjct: 357 CHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGT 416

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
             +   G  IH  +IK G   N  V N+++DMY +   +  AN+ F+++ EK L+TWN++
Sbjct: 417 ISFSQLGAQIHGYIIKTG-NFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSM 475

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I G+ ++G S E + +F +M       +  TF S+I AC+ L  L  G+ VH  ++  GL
Sbjct: 476 ICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGL 535

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             +  L  AL DMY+KCG +  +  +F  MS+R +V+W+ M+ GYG HG     I LF++
Sbjct: 536 RKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQ 595

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M+ SG++P+ I FM +L+ACSHAG V+EG  YF SM+++ V P  + + C+VDLL RAG 
Sbjct: 596 MLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMSEFGVEPKHDHFACMVDLLSRAGD 655

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           +  AY++I S+PF  + S+WG LL  C+ H+  ++ K     +LD+     G Y +LSNI
Sbjct: 656 LNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNI 715

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           YA EG W++F K R +M+  G +K  G S IE+  K+  F   D   S T+ +Y  LE  
Sbjct: 716 YAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRFGPGDTSHSQTKDIYRFLENF 775

Query: 586 IRHMNETAY--EPD 597
              ++   Y  EPD
Sbjct: 776 RSLVHAQVYDSEPD 789



 Score =  221 bits (563), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 125/433 (28%), Positives = 239/433 (55%), Gaps = 4/433 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           +++ T+L+  Y +   +++A   FD MP RDVV+W+ ++  +      ++   +F +M+ 
Sbjct: 135 AVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMIS 194

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             V P++ T+ SV +AC  + SL     VHG  ++  +E +  + NSL+ +Y      + 
Sbjct: 195 EAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLG-DLY 253

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +A  +F ++  +    WT +I+ Y  SG     L VF +M    +E N  +    + ACA
Sbjct: 254 SAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACA 313

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMN-SILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
             G V  G+ +H  VI+      L  +  +++++Y     L D ++ F+ + EK +++WN
Sbjct: 314 RLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWN 373

Query: 285 TIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           T+I+ + ++G   E L +F +M+++   P+ ++  S ++AC T++    G Q+H  I++ 
Sbjct: 374 TLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKT 433

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G + N  + NALIDMYAKCG +  + K+F ++ ++ LVTW SM+ G+  +G+  EAI LF
Sbjct: 434 G-NFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLF 492

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
           D+M  + V+ D++ F++V+ ACSH G +++G      +  Y +  +  +   + D+  + 
Sbjct: 493 DQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKC 552

Query: 464 GRVKEAYELIKSM 476
           G ++ A+ +   M
Sbjct: 553 GELQMAHGVFDRM 565



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 128/439 (29%), Positives = 227/439 (51%), Gaps = 15/439 (3%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV-RNE 107
           +T LI+SY   G+ E ++ +FD  P+ D   W V+I  Y       +A +++ EMV +++
Sbjct: 36  STKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQ 95

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA--TCCISMD 165
              + F   SVLKAC G   LS    VHG  IK G E    VE SL+ +Y   +C   +D
Sbjct: 96  TQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLCMYGEMSC---LD 152

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +A   F+ M  ++ V+W++++  +  +G    GL +F +M+ E VE +  +      AC+
Sbjct: 153 DACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACS 212

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
             G +  G+ +H  V++    SN  + NS++ MY +   L  A + F+ +  +    W  
Sbjct: 213 ELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTP 272

Query: 286 IIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I+ Y +SG   E LN+F+KM+  +  PN  T   ++ ACA L  +  G+ VH  ++RR 
Sbjct: 273 MISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRA 332

Query: 345 LDGNLA-LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           +D  L  L  AL+++YA  GN+ D  K+F  + ++ +++W +++  +  +G  +EA+ LF
Sbjct: 333 MDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLF 392

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV---NPNKEIYGCVVDLL 460
            +M   G+ PD     + L+AC        G +    ++ Y +   N N  +   ++D+ 
Sbjct: 393 VQMQTQGLMPDSYSLASSLSACGTISFSQLGAQ----IHGYIIKTGNFNDFVQNALIDMY 448

Query: 461 GRAGRVKEAYELIKSMPFK 479
            + G V  A ++ + +  K
Sbjct: 449 AKCGFVHSANKMFEKIKEK 467



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 106/375 (28%), Positives = 194/375 (51%), Gaps = 8/375 (2%)

Query: 118 VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK 177
           + + C    +L+    +H      GL         L++ YA   I  ++++ VF+     
Sbjct: 7   LFRRCATSTTLTQ---LHAHLFITGLHRHPPASTKLIESYAQIGI-FESSKRVFDTFPKP 62

Query: 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG-VEMNPYSFSIAVRACASTGWVSFGKLI 236
           +   W  LI  Y   G     + ++ EM+ +   +++ + F   ++AC+  G +S G  +
Sbjct: 63  DSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKV 122

Query: 237 HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-S 295
           H  VIK GF S+  V  S+L MY    CL DA + FD M  +D++ W++I+  + ++G +
Sbjct: 123 HGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQA 182

Query: 296 SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
           SE L+MFS+M SE   P+  T  S+  AC+ L +L  G+ VH  +VRR ++ N +L N+L
Sbjct: 183 SEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSL 242

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           I MY K G++  ++++F  +  R    WT M+  Y   G  +EA+ +F +M +  + P++
Sbjct: 243 IVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQ 302

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG-CVVDLLGRAGRVKEAYELIK 474
           +  + VL AC+  G V EG      +    ++P  +  G  +++L    G +++ +++ +
Sbjct: 303 VTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFE 362

Query: 475 SMPFKPDESVWGPLL 489
           ++  K   S W  L+
Sbjct: 363 TIKEKTILS-WNTLI 376



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 11/97 (11%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S L T L   Y   G ++ A  +FD M ER +VSW+VMIAGY      N   ++F +M+ 
Sbjct: 539 SYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLG 598

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG 142
           + + PN  T   +L AC            H  A++EG
Sbjct: 599 SGIKPNDITFMHILSACS-----------HAGAVEEG 624



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 5/174 (2%)

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           +  +   CAT   L+   Q+HA +   GL  +   +  LI+ YA+ G    S+++F    
Sbjct: 4   YMPLFRRCATSTTLT---QLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFP 60

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMV-KSGVRPDRIVFMAVLTACSHAGLVDEGL 435
             D   W  ++  Y   G  +EA+ L+ EMV +   +    VF +VL ACS  G +  G 
Sbjct: 61  KPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGG 120

Query: 436 KYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           K    +       +  +   ++ + G    + +A +   +MP + D   W  ++
Sbjct: 121 KVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIR-DVVAWSSIV 173


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 193/595 (32%), Positives = 338/595 (56%), Gaps = 13/595 (2%)

Query: 25  SLQSVKKSS-----IQSDPPLIPKGPSI---LATNLIKSYFDEGLIEEARTLFDEMPERD 76
           +LQ+ + SS     +Q    ++  G  +   +A  L+  Y   G + EA  +F  +  +D
Sbjct: 166 ALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKD 225

Query: 77  VVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHG 136
           +V+W  M+ G+     +++A   F ++   ++ P+  ++ S++ A   +  L N   +H 
Sbjct: 226 IVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHA 285

Query: 137 MAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGY 196
            AIK G + +I V N+L+D+YA CC      R  F+ M  K+ +SWTT   GYA +    
Sbjct: 286 YAIKNGFDSNILVGNTLIDMYAKCCCMSYGGR-AFDLMAHKDLISWTTAAAGYAQNKCYL 344

Query: 197 GGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSIL 256
             L + +++ +EG++++       + AC     +   K IH   I+ G  S+  + N+I+
Sbjct: 345 QALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGL-SDPVLQNTII 403

Query: 257 DMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCF 315
           D+Y     +  A + F+ +  KD+++W ++I+ Y  +G +++ L +FS MK     P+  
Sbjct: 404 DVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYV 463

Query: 316 TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEM 375
           T  SI++A  +L+ L  G+++H  I+R+G     +++N L+DMYA+CG++ D+ KIF+  
Sbjct: 464 TLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCT 523

Query: 376 SDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGL 435
            +R+L+ WT+M+  YG HG+G+ A+ELF  M    + PD I F+A+L ACSH+GLV+EG 
Sbjct: 524 KNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGK 583

Query: 436 KYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKE 494
            + + M  +Y + P  E Y C+VDLLGR   ++EAY+++KSM  +P   VW  LLGAC+ 
Sbjct: 584 SFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLGACRI 643

Query: 495 HRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMS 554
           H    +G++AA ++L+L  +  G Y+++SN++AA G+W++  + R  M+G G  K  G S
Sbjct: 644 HSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGSGLTKNPGCS 703

Query: 555 WIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHM-NETAYEPDIDCLIHDLEGE 608
           WIEV +K+  F++ DK+      +Y  L  +   +  E  Y      ++H++  E
Sbjct: 704 WIEVGNKIHAFLSRDKLHPECDKIYQKLAQVTEKLKREGGYVAQTKFVLHNVGEE 758



 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 147/473 (31%), Positives = 257/473 (54%), Gaps = 13/473 (2%)

Query: 60  GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119
           G + +A  +FD+M ER + +W  M+ GY S      A  ++ EM    V+ +++T   +L
Sbjct: 6   GSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPVLL 65

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179
           KAC  ++ L   A +HG+AIK G +  ++V NSL+ +YA  C  ++ AR +F+ M  +ND
Sbjct: 66  KACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAK-CNDINGARKLFDRMYVRND 124

Query: 180 -VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHA 238
            VSW ++I+ Y+ +G     L +F EML  GV  N Y+F+ A++AC  + ++  G  IHA
Sbjct: 125 VVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHA 184

Query: 239 AVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSE 297
           A++K G   ++ V N+++ MY RF  + +A   F  +  KD++TWN+++ G+ ++G  SE
Sbjct: 185 AILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSE 244

Query: 298 CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALID 357
            L  F  +++    P+  +  SII A   L  L  G+++HA  ++ G D N+ + N LID
Sbjct: 245 ALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLID 304

Query: 358 MYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIV 417
           MYAKC  +S   + F  M+ +DL++WT+   GY  +    +A+EL  ++   G+  D  +
Sbjct: 305 MYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATM 364

Query: 418 FMAVLTACSHAGLVDEGLKYFKSMNDYNVN---PNKEIYGCVVDLLGRAGRVKEAYELIK 474
             ++L AC   GL    L   K ++ Y +     +  +   ++D+ G  G +  A  + +
Sbjct: 365 IGSILLACR--GL--NCLGKIKEIHGYTIRGGLSDPVLQNTIIDVYGECGIIDYAVRIFE 420

Query: 475 SMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNMMGTYIILSNI 525
           S+  K D   W  ++     + L N  L   ++++   L+P+ +    ILS +
Sbjct: 421 SIECK-DVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAV 472



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 158/276 (57%), Gaps = 2/276 (0%)

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
           C S+ +A ++F+ M  ++  +W  ++ GY  +G   G L +++EM   GV  + Y+F + 
Sbjct: 5   CGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPVL 64

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKD 279
           ++AC     +  G  IH   IK+G  S + V+NS++ +Y + + ++ A + FD M    D
Sbjct: 65  LKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRND 124

Query: 280 LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           +++WN+II+ Y  +G  +E L +FS+M       N +TF + + AC   + +  G Q+HA
Sbjct: 125 VVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHA 184

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
            I++ G   ++ +ANAL+ MY + G + ++  IF  +  +D+VTW SM+ G+  +G   E
Sbjct: 185 AILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSE 244

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434
           A+E F ++  + ++PD++  ++++ A    G +  G
Sbjct: 245 ALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNG 280



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 158/315 (50%), Gaps = 14/315 (4%)

Query: 258 MYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFT 316
           MY +   + DA   FD+M+E+ + TWN ++ GY  +G +   L M+ +M+    S + +T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           F  ++ AC  +  L CG ++H   ++ G D  + + N+L+ +YAKC +I+ ++K+F  M 
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 377 DR-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGL 435
            R D+V+W S++  Y  +G   EA+ LF EM+K+GV  +   F A L AC  +  +  G+
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGM 180

Query: 436 KYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           +   ++       +  +   +V +  R G++ EA  +  ++  K D   W  +L    ++
Sbjct: 181 QIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGK-DIVTWNSMLTGFIQN 239

Query: 496 RLPN--LGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRK-----IMRGMGSK 548
            L +  L     L+  DLKP+ +     + +I  A G+       ++     I  G  S 
Sbjct: 240 GLYSEALEFFYDLQNADLKPDQVS----IISIIVASGRLGYLLNGKEIHAYAIKNGFDSN 295

Query: 549 KEVGMSWIEVRDKVC 563
             VG + I++  K C
Sbjct: 296 ILVGNTLIDMYAKCC 310


>gi|356546044|ref|XP_003541442.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Glycine max]
          Length = 628

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 194/568 (34%), Positives = 322/568 (56%), Gaps = 14/568 (2%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFD--EMPERDVVSWTVMIAGYTSFNCHNQAWTVFV 101
           G  +  T+LI  Y    LI+ +  +F+      ++V ++  +IAG+ +     +A  ++ 
Sbjct: 62  GSPLAITSLINMYSKCSLIDHSLRVFNFPTHHNKNVFAYNALIAGFLANALPQRALALYN 121

Query: 102 EMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
           +M    + P+ FT   V++AC           +HG+  K GLE  ++V ++L++ Y    
Sbjct: 122 QMRHLGIAPDKFTFPCVIRACGDDDDGFVVTKIHGLMFKVGLELDVFVGSALVNTYLKFR 181

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
              +  R VF ++  ++ V W  ++ G+A  G     LGVF+ M   GV    Y+ +  +
Sbjct: 182 FVGEAYR-VFEELPVRDVVLWNAMVNGFAQIGRFEEALGVFRRMGGNGVVPCRYTVTGVL 240

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
              +  G    G+ +H  V K G+ S + V N+++DMY +  C+ DA   F+ M E D+ 
Sbjct: 241 SIFSVMGDFDNGRAVHGFVTKMGYESGVVVSNALIDMYGKCKCVGDALSVFEMMDEIDIF 300

Query: 282 TWNTIIAGYEKSGSSE-CLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           +WN+I++ +E+ G     L +F +M  S R  P+  T T+++ AC  LAAL  G+++H  
Sbjct: 301 SWNSIMSVHERCGDHYGTLRLFDRMMGSSRVQPDLVTVTTVLPACTHLAALMHGREIHGY 360

Query: 340 IVRRGLD--------GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG 391
           +V  GL          ++ L NAL+DMYAKCGN+ D++ +F  M ++D+ +W  M+ GYG
Sbjct: 361 MVVNGLAKEESHDVFDDVLLNNALMDMYAKCGNMRDARMVFVNMREKDVASWNIMITGYG 420

Query: 392 AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNK 450
            HG+G EA+++F  M ++ + P+ I F+ +L+ACSHAG+V EGL +   M + Y V+P+ 
Sbjct: 421 MHGYGGEALDIFSRMCQAQMVPNEISFVGLLSACSHAGMVKEGLGFLSEMESKYGVSPSI 480

Query: 451 EIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD 510
           E Y CV+D+L RAG++ EAY+L+ +MPFK D   W  LL AC+ H   +L ++AA +V++
Sbjct: 481 EHYTCVIDMLCRAGQLMEAYDLVLTMPFKADPVGWRSLLAACRLHNDTDLAEVAASKVIE 540

Query: 511 LKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDK 570
           L+P+  G Y+++SN+Y   G++EE  ++R  M+    KK  G SWIE+ + V  FI  D+
Sbjct: 541 LEPDHCGNYVLMSNVYGVVGRYEEVLEWRYTMKQQNVKKRPGCSWIELVNGVHVFITGDR 600

Query: 571 MGSHTQYVYGVLEMLIRHMNETAYEPDI 598
               T+Y+Y  L  L   + E  Y P I
Sbjct: 601 THPQTEYIYAGLNSLTAVLQEHGYVPFI 628



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 145/304 (47%), Gaps = 17/304 (5%)

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE--K 278
           +++CA    +S GK +H  ++K+ F  +   + S+++MY +   +  + + F+  T   K
Sbjct: 36  LQSCAHNANLSKGKELHTHLLKNAFFGSPLAITSLINMYSKCSLIDHSLRVFNFPTHHNK 95

Query: 279 DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
           ++  +N +IAG+  +      L ++++M+    +P+ FTF  +I AC          ++H
Sbjct: 96  NVFAYNALIAGFLANALPQRALALYNQMRHLGIAPDKFTFPCVIRACGDDDDGFVVTKIH 155

Query: 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
             + + GL+ ++ + +AL++ Y K   + ++ ++F E+  RD+V W +M+ G+   G  +
Sbjct: 156 GLMFKVGLELDVFVGSALVNTYLKFRFVGEAYRVFEELPVRDVVLWNAMVNGFAQIGRFE 215

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVV 457
           EA+ +F  M  +GV P R     VL+  S  G  D G      +          +   ++
Sbjct: 216 EALGVFRRMGGNGVVPCRYTVTGVLSIFSVMGDFDNGRAVHGFVTKMGYESGVVVSNALI 275

Query: 458 DLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA---CKEHRLPNLGKLAALRVLDLKPN 514
           D+ G+   V +A  + + M  + D   W  ++     C +H          LR+ D    
Sbjct: 276 DMYGKCKCVGDALSVFEMMD-EIDIFSWNSIMSVHERCGDH-------YGTLRLFD---R 324

Query: 515 MMGT 518
           MMG+
Sbjct: 325 MMGS 328



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 68/313 (21%), Positives = 137/313 (43%), Gaps = 38/313 (12%)

Query: 316 TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFS-- 373
           T  + + +CA  A LS G+++H  +++    G+     +LI+MY+KC  I  S ++F+  
Sbjct: 31  TCIATLQSCAHNANLSKGKELHTHLLKNAFFGSPLAITSLINMYSKCSLIDHSLRVFNFP 90

Query: 374 EMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDE 433
              ++++  + +++ G+ A+   + A+ L+++M   G+ PD+  F  V+ AC   G  D+
Sbjct: 91  THHNKNVFAYNALIAGFLANALPQRALALYNQMRHLGIAPDKFTFPCVIRAC---GDDDD 147

Query: 434 GL---KYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490
           G    K    M    +  +  +   +V+   +   V EAY + + +P + D  +W  ++ 
Sbjct: 148 GFVVTKIHGLMFKVGLELDVFVGSALVNTYLKFRFVGEAYRVFEELPVR-DVVLWNAMVN 206

Query: 491 ACK-----EHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545
                   E  L    ++    V+  +  + G   +LS I++  G ++        +  M
Sbjct: 207 GFAQIGRFEEALGVFRRMGGNGVVPCRYTVTG---VLS-IFSVMGDFDNGRAVHGFVTKM 262

Query: 546 GSKKEV------------------GMSWIEVRDKVCGFIANDKMGSHTQY--VYGVLEML 585
           G +  V                   +S  E+ D++  F  N  M  H +    YG L + 
Sbjct: 263 GYESGVVVSNALIDMYGKCKCVGDALSVFEMMDEIDIFSWNSIMSVHERCGDHYGTLRLF 322

Query: 586 IRHMNETAYEPDI 598
            R M  +  +PD+
Sbjct: 323 DRMMGSSRVQPDL 335


>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
 gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 181/554 (32%), Positives = 323/554 (58%), Gaps = 3/554 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A  L+  Y     +++A  LF+ +P  D+V+W  MI+G       ++A  +F +M+R+ 
Sbjct: 279 VANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSG 338

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
             P++ TL S+L A   +  L     VHG  I+  +    ++ ++L+D+Y  C   +  A
Sbjct: 339 ARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKC-RDVRTA 397

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R +++  +  + V  +T+I+GY  +G     L +F+ +L + ++ N  + +  + ACAS 
Sbjct: 398 RNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASI 457

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  G+ IH  V+++ +     V ++++DMY +   L  ++  F +M+ KD +TWN++I
Sbjct: 458 SALPLGQEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMI 517

Query: 288 AGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           + + ++G   E L++F +M  E    N  T +S ++ACA+L A+  G+++H  I++  + 
Sbjct: 518 SSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKGPIK 577

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            ++   +ALIDMYAKCGN+  + ++F  M D++ V+W S++  YGAHG  KE++     M
Sbjct: 578 ADIFAESALIDMYAKCGNMELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSFLHRM 637

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGR 465
            + G +PD + F+A+++AC+HAGLV+EGL+ F+ M  +Y + P  E + C+VDL  R+GR
Sbjct: 638 QEEGYKPDHVTFLALISACAHAGLVEEGLQLFQCMTKEYLIAPRMEHFACMVDLYSRSGR 697

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           + +A + I  MPFKPD  +WG LL AC+ HR   L  +A+  +  L P   G Y+++SNI
Sbjct: 698 LDKAIQFIADMPFKPDAGIWGALLHACRVHRNVELADIASQELFKLDPGNSGYYVLMSNI 757

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
            A  G+W+  +K R++M+     K  G SW++V +    F+A+DK    ++ +Y  L+ L
Sbjct: 758 NAVAGRWDGVSKVRRLMKDNKILKIPGYSWVDVNNSSHLFVASDKSHPESEDIYTSLKAL 817

Query: 586 IRHMNETAYEPDID 599
           ++ + E  Y P  D
Sbjct: 818 LQELREEGYVPRPD 831



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 144/498 (28%), Positives = 255/498 (51%), Gaps = 6/498 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + + LIK Y D GL+ +AR  FD MP RD V W VM+ GY        A  +F  M  + 
Sbjct: 178 VGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNMRVSG 237

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
             PN  TL+  L  C     L +   +H +A+K GLE  + V N+L+ +YA  C  +D+A
Sbjct: 238 CEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAK-CRCLDDA 296

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             +F  +   + V+W  +I+G   +G     LG+F +ML  G   +  +    + A    
Sbjct: 297 WRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDL 356

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  GK +H  +I++    +  ++++++D+Y +   +  A   +D     D++  +T+I
Sbjct: 357 NGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVI 416

Query: 288 AGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           +GY  +G SE  L MF  +  +   PN  T  S++ ACA+++AL  GQ++H  ++R   +
Sbjct: 417 SGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYE 476

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
           G   + +AL+DMYAKCG +  S  IFS+MS +D VTW SM+  +  +G  +EA++LF +M
Sbjct: 477 GKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQM 536

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
              G++ + +   + L+AC+    +  G +    +    +  +      ++D+  + G +
Sbjct: 537 CMEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKGPIKADIFAESALIDMYAKCGNM 596

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRL--PNLGKLAALRVLDLKPNMMGTYIILSN 524
           + A  + + MP K +E  W  ++ A   H L   ++  L  ++    KP+ + T++ L +
Sbjct: 597 ELALRVFEFMPDK-NEVSWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHV-TFLALIS 654

Query: 525 IYAAEGKWEEFAKFRKIM 542
             A  G  EE  +  + M
Sbjct: 655 ACAHAGLVEEGLQLFQCM 672



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 119/462 (25%), Positives = 235/462 (50%), Gaps = 16/462 (3%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDV---VSWTVMIAGYTSFNCHNQAWTVFVEMV 104
           L T L+  Y       +A  +F  +P       + W  +I G+T+   H+ A   +V+M 
Sbjct: 72  LHTRLLGMYVLARRFRDAVAVFSALPRAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMW 131

Query: 105 RNEV--NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
            +    +P+A TL  V+K+C  + ++S   LVH  A   GL   +YV ++L+ +Y+   +
Sbjct: 132 THPAAPSPDAHTLPYVVKSCAALGAVSLGRLVHRTARATGLASDVYVGSALIKMYSDAGL 191

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            + +AR  F+ M W++ V W  ++ GY  +G+  G + +F+ M + G E N  + +  + 
Sbjct: 192 -LRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLS 250

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
            CA+   +  G  +H+  +K G    + V N++L MY +  CL DA + F+ +   DL+T
Sbjct: 251 VCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVT 310

Query: 283 WNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           WN +I+G  ++G   E L +F  M      P+  T  S++ A   L  L  G++VH  I+
Sbjct: 311 WNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYII 370

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           R  +  +  L +AL+D+Y KC ++  ++ ++      D+V  ++++ GY  +G  ++A++
Sbjct: 371 RNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQ 430

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE----IYGCVV 457
           +F  +++  ++P+ +   +VL AC+    +  G    + ++ Y +    E    +   ++
Sbjct: 431 MFRYLLEQCIKPNAVTVASVLPACASISALPLG----QEIHGYVLRNAYEGKCYVESALM 486

Query: 458 DLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN 499
           D+  + GR+  ++ +   M  K DE  W  ++ +  ++  P 
Sbjct: 487 DMYAKCGRLDLSHYIFSKMSLK-DEVTWNSMISSFSQNGEPQ 527



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 101/362 (27%), Positives = 190/362 (52%), Gaps = 26/362 (7%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + L + L+  YF    +  AR L+D     DVV  + +I+GY       +A  +F  ++ 
Sbjct: 378 AFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLE 437

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             + PNA T++SVL AC  + +L     +HG  ++   EG  YVE++LMD+YA C   +D
Sbjct: 438 QCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYEGKCYVESALMDMYAKCG-RLD 496

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            +  +F+ M  K++V+W ++I+ ++ +G     L +F++M +EG++ N  + S A+ ACA
Sbjct: 497 LSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACA 556

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           S   + +GK IH  +IK    +++   ++++DMY +   +  A + F+ M +K+ ++WN+
Sbjct: 557 SLPAIYYGKEIHGVIIKGPIKADIFAESALIDMYAKCGNMELALRVFEFMPDKNEVSWNS 616

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           II+ Y   G   E ++   +M+ E + P+  TF ++I+ACA           HAG+V  G
Sbjct: 617 IISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACA-----------HAGLVEEG 665

Query: 345 LDGNLALAN------------ALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYG 391
           L     +               ++D+Y++ G +  + +  ++M  + D   W +++    
Sbjct: 666 LQLFQCMTKEYLIAPRMEHFACMVDLYSRSGRLDKAIQFIADMPFKPDAGIWGALLHACR 725

Query: 392 AH 393
            H
Sbjct: 726 VH 727



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 106/376 (28%), Positives = 182/376 (48%), Gaps = 20/376 (5%)

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGL---EGSIYVENSLMDVYATCCISMDNA 167
           +A  L ++L+ C     L     +H  A+  G       + +   L+ +Y        +A
Sbjct: 31  SADRLLALLRGCVSAPHLPLGLQIHARAVVSGALSNHNHLALHTRLLGMY-VLARRFRDA 89

Query: 168 RLVFNDMKWK---NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP--YSFSIAVR 222
             VF+ +      + + W  LI G+  +G+    +  + +M       +P  ++    V+
Sbjct: 90  VAVFSALPRAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVK 149

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           +CA+ G VS G+L+H      G  S++ V ++++ MY     L DA   FD M  +D + 
Sbjct: 150 SCAALGAVSLGRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVL 209

Query: 283 WNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           WN ++ GY K+G     + +F  M+     PN  T    ++ CA  A L  G Q+H+  V
Sbjct: 210 WNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAV 269

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           + GL+  +A+AN L+ MYAKC  + D+ ++F  +   DLVTW  M+ G   +G   EA+ 
Sbjct: 270 KCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALG 329

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVD-EGLKYFKSMNDY----NVNPNKEIYGCV 456
           LF +M++SG RPD +  +++L A     L D  GLK  K ++ Y     V+ +  +   +
Sbjct: 330 LFCDMLRSGARPDSVTLVSLLPA-----LTDLNGLKQGKEVHGYIIRNCVHMDAFLVSAL 384

Query: 457 VDLLGRAGRVKEAYEL 472
           VD+  +   V+ A  L
Sbjct: 385 VDIYFKCRDVRTARNL 400



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 119/247 (48%), Gaps = 3/247 (1%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           +G   + + L+  Y   G ++ +  +F +M  +D V+W  MI+ ++      +A  +F +
Sbjct: 476 EGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQ 535

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M    +  N  T+SS L AC  + ++     +HG+ IK  ++  I+ E++L+D+YA C  
Sbjct: 536 MCMEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKGPIKADIFAESALIDMYAKCG- 594

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
           +M+ A  VF  M  KN+VSW ++I+ Y   G     +     M  EG + +  +F   + 
Sbjct: 595 NMELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALIS 654

Query: 223 ACASTGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DL 280
           ACA  G V  G +L      ++     +     ++D+Y R   L  A Q+  +M  K D 
Sbjct: 655 ACAHAGLVEEGLQLFQCMTKEYLIAPRMEHFACMVDLYSRSGRLDKAIQFIADMPFKPDA 714

Query: 281 ITWNTII 287
             W  ++
Sbjct: 715 GIWGALL 721


>gi|224141133|ref|XP_002323929.1| predicted protein [Populus trichocarpa]
 gi|222866931|gb|EEF04062.1| predicted protein [Populus trichocarpa]
          Length = 770

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 209/564 (37%), Positives = 321/564 (56%), Gaps = 18/564 (3%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHN-QAWTVFVEMVRNEVNP 110
           LI  Y   G + EAR +F+EM  RD+VSW  MI+GY+    +  +A ++F++M R  +  
Sbjct: 205 LISMYSRWGHLVEARRVFEEMKTRDLVSWNAMISGYSQEGIYGLEAISMFLQMFRGGMEL 264

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           +  + +S + AC   K+L  A  +HG++IK   E  + V N L+  Y  C + +++ARLV
Sbjct: 265 DRISFTSAVSACGYEKNLELARQIHGLSIKTRHEKHVAVSNVLISTYFKCQV-IEDARLV 323

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F +M  +N VSWTT+I     S +    +  F EM L+GV  N  +F   + A      V
Sbjct: 324 FQNMNERNVVSWTTMI-----SIDEAEAVSFFNEMRLDGVYPNDVTFVGLIHAITIGELV 378

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
             GK++H    K GF S   V NSI+ MY +F  + D+ + F E+  +D+I WN +I+G+
Sbjct: 379 VQGKMVHGFCTKTGFSSKSNVCNSIITMYAKFKSMQDSVKVFQELKYQDIIAWNALISGF 438

Query: 291 EKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAA--CATLAALSCGQQVHAGIVRRGLDG 347
             +G   E +  F     E   PN ++F SI+ A   A   +L  GQ+ H+ I++ GL+ 
Sbjct: 439 VHNGLCQEAIRAFFSGLIES-KPNQYSFGSILNAIGAAEDVSLKYGQRCHSQIIKLGLNT 497

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           +  +++AL+DMYAK G+I +SQK+F E   +    WT+++  Y  HG  +  +  F+EM 
Sbjct: 498 DPIVSSALLDMYAKRGSICESQKVFVETPQQSQFAWTTIISAYARHGDYESVMNWFEEMR 557

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRV 466
           +  VRPD I F+++LTAC   G+VD G   F SM  DY + P+ E Y C+VD+LGRAGR+
Sbjct: 558 RLEVRPDSITFLSILTACGRRGMVDMGCHLFGSMVKDYQIEPSAEHYSCLVDMLGRAGRL 617

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
           +EA  L+  +P  P  SV   LLGAC+ H   ++G+  A  +++++P   G+Y+++SN+Y
Sbjct: 618 EEAERLMSHIPGGPGLSVLQSLLGACRVHGNVDMGERVADALMEMEPTESGSYVLMSNLY 677

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRD-----KVCGFIANDKMGSHTQYVYGV 581
           A  GKWE  AK RK MR  G KKEVG SW++V        + GF + D     ++ +  +
Sbjct: 678 AEIGKWEMVAKVRKRMRVKGVKKEVGFSWVDVGGIDSSLSLHGFSSGDTSHPQSEAICRM 737

Query: 582 LEMLIRHMNETAYEPDIDCLIHDL 605
            E L   M +   E +I+C  H L
Sbjct: 738 AECLGFEM-KFLREEEIECQKHSL 760



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 122/488 (25%), Positives = 245/488 (50%), Gaps = 23/488 (4%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           +I++ +L+  Y   G   +A  +F+ +   D+VSW  +++G  +      A++   +M  
Sbjct: 99  TIVSNSLMNMYCKSGQFCKALCIFENLTHPDIVSWNTVLSGCQT---SEDAFSFACKMNS 155

Query: 106 NEVNPNAFTLSSVLKAC-KGMKSLSNAAL-VHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           + V  +A T ++VL  C + +++     L +H   +K G +  ++V N+L+ +Y+     
Sbjct: 156 SGVVFDAVTYTTVLSFCWRHVEAYFLIGLQLHSCIVKFGFDCEVFVGNALISMYSRWG-H 214

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSG-NGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
           +  AR VF +MK ++ VSW  +I+GY+  G  G   + +F +M   G+E++  SF+ AV 
Sbjct: 215 LVEARRVFEEMKTRDLVSWNAMISGYSQEGIYGLEAISMFLQMFRGGMELDRISFTSAVS 274

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           AC     +   + IH   IK     ++ V N ++  Y +   + DA   F  M E+++++
Sbjct: 275 ACGYEKNLELARQIHGLSIKTRHEKHVAVSNVLISTYFKCQVIEDARLVFQNMNERNVVS 334

Query: 283 WNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           W T+I+  E    +E ++ F++M+ +   PN  TF  +I A      +  G+ VH    +
Sbjct: 335 WTTMISIDE----AEAVSFFNEMRLDGVYPNDVTFVGLIHAITIGELVVQGKMVHGFCTK 390

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE- 401
            G      + N++I MYAK  ++ DS K+F E+  +D++ W +++ G+  +G  +EAI  
Sbjct: 391 TGFSSKSNVCNSIITMYAKFKSMQDSVKVFQELKYQDIIAWNALISGFVHNGLCQEAIRA 450

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND----YNVNPNKEIYGCVV 457
            F  +++S  +P++  F ++L A   A   D  LKY +  +       +N +  +   ++
Sbjct: 451 FFSGLIES--KPNQYSFGSILNAIGAAE--DVSLKYGQRCHSQIIKLGLNTDPIVSSALL 506

Query: 458 DLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH--RLPNLGKLAALRVLDLKPNM 515
           D+  + G + E+ ++    P +  +  W  ++ A   H      +     +R L+++P+ 
Sbjct: 507 DMYAKRGSICESQKVFVETP-QQSQFAWTTIISAYARHGDYESVMNWFEEMRRLEVRPDS 565

Query: 516 MGTYIILS 523
           +    IL+
Sbjct: 566 ITFLSILT 573



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 126/503 (25%), Positives = 235/503 (46%), Gaps = 56/503 (11%)

Query: 45  PSILATNLIKSYFDE---GLIEEARTLFDEMPERDVVSWTV---MIAGYTSFNCHNQAWT 98
           P I A   IK  F     G    A  L D+ P R++    +   +++G+ +         
Sbjct: 12  PGIRAKPCIKRSFSTNKTGESSHAHNLLDKTPHRNLSFQIIKEHLLSGFIN--------- 62

Query: 99  VFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA 158
                     N + FT+++ LKAC+G   L +   +HG +I         V NSLM++Y 
Sbjct: 63  ----------NIDEFTVANALKACRGYPLLGSQ--IHGFSIIHEFVNVTIVSNSLMNMY- 109

Query: 159 TCCISMD--NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYS 216
             C S     A  +F ++   + VSW T+++G   S + +       +M   GV  +  +
Sbjct: 110 --CKSGQFCKALCIFENLTHPDIVSWNTVLSGCQTSEDAF---SFACKMNSSGVVFDAVT 164

Query: 217 FSIAVRAC--ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE 274
           ++  +  C      +   G  +H+ ++K GF   + V N+++ MY R+  L +A + F+E
Sbjct: 165 YTTVLSFCWRHVEAYFLIGLQLHSCIVKFGFDCEVFVGNALISMYSRWGHLVEARRVFEE 224

Query: 275 MTEKDLITWNTIIAGYEKSG--SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSC 332
           M  +DL++WN +I+GY + G    E ++MF +M       +  +FTS ++AC     L  
Sbjct: 225 MKTRDLVSWNAMISGYSQEGIYGLEAISMFLQMFRGGMELDRISFTSAVSACGYEKNLEL 284

Query: 333 GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA 392
            +Q+H   ++   + ++A++N LI  Y KC  I D++ +F  M++R++V+WT+M+    A
Sbjct: 285 ARQIHGLSIKTRHEKHVAVSNVLISTYFKCQVIEDARLVFQNMNERNVVSWTTMISIDEA 344

Query: 393 HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEI 452
                EA+  F+EM   GV P+ + F+ ++ A +   LV +G            +    +
Sbjct: 345 -----EAVSFFNEMRLDGVYPNDVTFVGLIHAITIGELVVQGKMVHGFCTKTGFSSKSNV 399

Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL------GACKEHRLPNLGKLAAL 506
              ++ +  +   ++++ ++ + + ++ D   W  L+      G C+E        L   
Sbjct: 400 CNSIITMYAKFKSMQDSVKVFQELKYQ-DIIAWNALISGFVHNGLCQEAIRAFFSGL--- 455

Query: 507 RVLDLKPNMMGTYIILSNIYAAE 529
             ++ KPN      IL+ I AAE
Sbjct: 456 --IESKPNQYSFGSILNAIGAAE 476



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 10/99 (10%)

Query: 29  VKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYT 88
           + K  + +DP        I+++ L+  Y   G I E++ +F E P++   +WT +I+ Y 
Sbjct: 490 IIKLGLNTDP--------IVSSALLDMYAKRGSICESQKVFVETPQQSQFAWTTIISAYA 541

Query: 89  SFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKAC--KGM 125
               +      F EM R EV P++ T  S+L AC  +GM
Sbjct: 542 RHGDYESVMNWFEEMRRLEVRPDSITFLSILTACGRRGM 580


>gi|297814636|ref|XP_002875201.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297814638|ref|XP_002875202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321039|gb|EFH51460.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321040|gb|EFH51461.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 708

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 189/538 (35%), Positives = 312/538 (57%), Gaps = 8/538 (1%)

Query: 24  QSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVM 83
           Q L + KK  I      +P   +++ T L+  Y   G I+ +  +F+++  R+VV WT M
Sbjct: 168 QDLDNGKK--IHCQIVKVPSFDNVVLTGLLDMYAKCGEIKSSYKVFEDITLRNVVCWTSM 225

Query: 84  IAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGL 143
           IAGY   + + +   +F  M  N V  N +T  +++ AC  +++L      HG  IK G+
Sbjct: 226 IAGYVKNDLYEEGLVLFNRMRENSVLGNEYTYGTLVMACTKLRALHQGKWFHGCLIKSGI 285

Query: 144 EGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFK 203
           E S  +  SL+D+Y  C   + NAR VFN+    + V WT +I GY H+G+    L +F+
Sbjct: 286 ELSSCLVTSLLDMYVKCG-DISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQ 344

Query: 204 EMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFD 263
           +M   G++ N  + +  +  C   G +  G+ IH   IK G   +  V N+++ MY +  
Sbjct: 345 KMSGVGIKPNCVTIASVLSGCGLVGNLELGRSIHGLSIKVGIW-DTNVANALVHMYAKCY 403

Query: 264 CLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIA 322
              DA   F+  +EKD++ WN+II+G+ ++GS  E L +F +M +E   PN  T  S+ +
Sbjct: 404 QNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNTESVMPNGVTVASLFS 463

Query: 323 ACATLAALSCGQQVHAGIVRRGL--DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDL 380
           ACA+L +L+ G  +HA  V+ G     ++ +  AL+D YAKCG+   ++ IF  + +++ 
Sbjct: 464 ACASLGSLAIGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDAESARLIFDTIEEKNT 523

Query: 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS 440
           +TW++M+ GYG  G  K ++ELF+EM+K   +P+   F +VL+ACSH G+V+EG KYF S
Sbjct: 524 ITWSAMIGGYGKQGDTKGSLELFEEMLKKQQKPNESTFTSVLSACSHTGMVNEGKKYFSS 583

Query: 441 M-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN 499
           M  DYN  P+ + Y C+VD+L RAG +++A ++I+ MP +PD   +G  L  C  H   +
Sbjct: 584 MYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGAFLHGCGMHSRFD 643

Query: 500 LGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIE 557
           LG++   ++LDL P+    Y+++SN+YA++G+W +  + R +M+  G  K  G S +E
Sbjct: 644 LGEIVIKKMLDLHPDDASYYVLVSNLYASDGRWSQAKEVRNLMKQRGLSKIAGHSIME 701



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 140/497 (28%), Positives = 234/497 (47%), Gaps = 42/497 (8%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   +AT L+  Y   G  ++AR +FD++PE D   W V++  Y   N   +    +  +
Sbjct: 86  GDISIATKLVSLYGSFGYTKDARLVFDQIPEPDFYLWKVILRCYCLNNESFEVIKFYDLL 145

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           +++    +    S  LKAC  ++ L N   +H   +K     ++ V   L+D+YA C   
Sbjct: 146 MKHGFGYDDIVFSKALKACTEVQDLDNGKKIHCQIVKVPSFDNV-VLTGLLDMYAKCG-E 203

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           + ++  VF D+  +N V WT++I GY  +     GL +F  M    V  N Y++   V A
Sbjct: 204 IKSSYKVFEDITLRNVVCWTSMIAGYVKNDLYEEGLVLFNRMRENSVLGNEYTYGTLVMA 263

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C     +  GK  H  +IK G   +  ++ S+LDMY +   +S+A + F+E +  DL+ W
Sbjct: 264 CTKLRALHQGKWFHGCLIKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMW 323

Query: 284 NTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
             +I GY  +GS +E L++F KM      PNC T  S+++ C  +  L  G+ +H   ++
Sbjct: 324 TAMIVGYTHNGSVNEALSLFQKMSGVGIKPNCVTIASVLSGCGLVGNLELGRSIHGLSIK 383

Query: 343 RGL-DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
            G+ D N  +ANAL+ MYAKC    D++ +F   S++D+V W S++ G+  +G   EA+ 
Sbjct: 384 VGIWDTN--VANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALF 441

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG------------------------LKY 437
           LF  M    V P+ +   ++ +AC+  G +  G                        L +
Sbjct: 442 LFHRMNTESVMPNGVTVASLFSACASLGSLAIGSSLHAYSVKLGFLASSSVHVGTALLDF 501

Query: 438 FKSMNDYNV---------NPNKEIYGCVVDLLGRAGRVKEAYELIKSM---PFKPDESVW 485
           +    D              N   +  ++   G+ G  K + EL + M     KP+ES +
Sbjct: 502 YAKCGDAESARLIFDTIEEKNTITWSAMIGGYGKQGDTKGSLELFEEMLKKQQKPNESTF 561

Query: 486 GPLLGACKEHRLPNLGK 502
             +L AC    + N GK
Sbjct: 562 TSVLSACSHTGMVNEGK 578



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 175/318 (55%), Gaps = 6/318 (1%)

Query: 118 VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK 177
           +L  C  + SL  A   HG+    GL G I +   L+ +Y +   + D ARLVF+ +   
Sbjct: 62  LLSKCTNIDSLRQA---HGVLTGNGLMGDISIATKLVSLYGSFGYTKD-ARLVFDQIPEP 117

Query: 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIH 237
           +   W  ++  Y  +   +  +  +  ++  G   +   FS A++AC     +  GK IH
Sbjct: 118 DFYLWKVILRCYCLNNESFEVIKFYDLLMKHGFGYDDIVFSKALKACTEVQDLDNGKKIH 177

Query: 238 AAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SS 296
             ++K     N+ V+  +LDMY +   +  + + F+++T ++++ W ++IAGY K+    
Sbjct: 178 CQIVKVPSFDNV-VLTGLLDMYAKCGEIKSSYKVFEDITLRNVVCWTSMIAGYVKNDLYE 236

Query: 297 ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALI 356
           E L +F++M+      N +T+ +++ AC  L AL  G+  H  +++ G++ +  L  +L+
Sbjct: 237 EGLVLFNRMRENSVLGNEYTYGTLVMACTKLRALHQGKWFHGCLIKSGIELSSCLVTSLL 296

Query: 357 DMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI 416
           DMY KCG+IS+++++F+E S  DLV WT+M++GY  +G   EA+ LF +M   G++P+ +
Sbjct: 297 DMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMSGVGIKPNCV 356

Query: 417 VFMAVLTACSHAGLVDEG 434
              +VL+ C   G ++ G
Sbjct: 357 TIASVLSGCGLVGNLELG 374



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 81/169 (47%), Gaps = 7/169 (4%)

Query: 311 SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQK 370
           S  CF    +++ C  + +L   +Q H  +   GL G++++A  L+ +Y   G   D++ 
Sbjct: 56  SRPCFL---LLSKCTNIDSL---RQAHGVLTGNGLMGDISIATKLVSLYGSFGYTKDARL 109

Query: 371 IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           +F ++ + D   W  ++  Y  +    E I+ +D ++K G   D IVF   L AC+    
Sbjct: 110 VFDQIPEPDFYLWKVILRCYCLNNESFEVIKFYDLLMKHGFGYDDIVFSKALKACTEVQD 169

Query: 431 VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
           +D G K    +       N  + G ++D+  + G +K +Y++ + +  +
Sbjct: 170 LDNGKKIHCQIVKVPSFDNVVLTG-LLDMYAKCGEIKSSYKVFEDITLR 217


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 189/563 (33%), Positives = 322/563 (57%), Gaps = 9/563 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           ++  LI  Y + G +E+A  +F  M  +D VSW  +++G    + ++ A   F +M  + 
Sbjct: 288 VSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSG 347

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS--MD 165
             P+  ++ +++ A     +L     VH  AIK G++ ++++ NSL+D+Y  CC    M 
Sbjct: 348 QKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMG 407

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +A   F  M  K+ +SWTT+I GYA +      L + +++ LE ++++P      + AC+
Sbjct: 408 SA---FEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACS 464

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
                   K IH  V+K G  +++ + N+I+++Y     +  A   F+ +  KD+++W +
Sbjct: 465 GLKSEKLIKEIHGYVLKGGL-ADILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTS 523

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I     +G + E L +F+ +      P+  T  S++ A A L++L  G+++H  ++R+G
Sbjct: 524 MITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKG 583

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
                 +AN+L+DMYA+CG + +++ IF+ +  RDL+ WTSM+   G HG GK+AI+LF 
Sbjct: 584 FFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMINANGMHGCGKDAIDLFS 643

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRA 463
           +M    V PD I F+A+L ACSH+GLV EG ++F+ M N+Y + P  E Y C+VDLL R+
Sbjct: 644 KMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYACLVDLLARS 703

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
             ++EAY  +++MP +P   VW  LLGAC+ H   +LG++AA ++L L     G Y+++S
Sbjct: 704 NSLEEAYHFVRNMPIEPSAEVWCALLGACRIHSNNDLGEVAAKKLLQLNTENSGNYVLVS 763

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           N +AA+G+W +  + R IM+G   KK+ G SWIEV +K+  F+A DK       +Y  L 
Sbjct: 764 NTFAADGRWNDVEEVRSIMKGNKLKKKPGCSWIEVENKIHTFMARDKSHPQCNNIYLKLA 823

Query: 584 MLIRHMNET-AYEPDIDCLIHDL 605
              + + E   Y      + HD+
Sbjct: 824 QFTKLLKEKGGYRAQTKLVFHDV 846



 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 145/494 (29%), Positives = 252/494 (51%), Gaps = 25/494 (5%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            L T  +  Y   G   +A  +FD+M ER + +W  MI    S   + +A  ++ EM   
Sbjct: 83  FLDTKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVL 142

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V+ +AFT   VLKAC   K       +HG+A+K G  G ++V N+L+ +YA C   +  
Sbjct: 143 GVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCG-DLGG 201

Query: 167 ARLVFND--MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           AR++F+   M+  + VSW ++I+ +   G     L +F+ M   GVE N Y+F  A++AC
Sbjct: 202 ARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQAC 261

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
               ++  G+ IHA ++K    +++ V N+++ MY     + DA + F  M  KD ++WN
Sbjct: 262 EGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWN 321

Query: 285 TIIAG-YEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           T+++G  +    S+ +N F  M+     P+  +  ++IAA    A L  G +VHA  ++ 
Sbjct: 322 TLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKH 381

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G+D N+ + N+LIDMY KC  +      F  M ++DL++WT+++ GY  +    +A+ L 
Sbjct: 382 GIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLL 441

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN---PNKEIYGCVVDLL 460
            ++    +  D ++  ++L ACS  GL  E  K  K ++ Y +     +  I   +V++ 
Sbjct: 442 RKVQLEKMDVDPMMIGSILLACS--GLKSE--KLIKEIHGYVLKGGLADILIQNAIVNVY 497

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520
           G    V  A  + +S+  K D   W  ++  C  + L       A+  L+L  +++ T I
Sbjct: 498 GELALVDYARHVFESINSK-DIVSWTSMITCCVHNGL-------AIEALELFNSLIETNI 549

Query: 521 ------ILSNIYAA 528
                 ++S +YAA
Sbjct: 550 EPDLITLVSVLYAA 563



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 107/420 (25%), Positives = 205/420 (48%), Gaps = 10/420 (2%)

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIK-EGLEGSIYVENSLMDVYATCCISMDNAR 168
           P     S  L+ C   K+L     +H   +K +    S++++   + +Y  C  S  +A 
Sbjct: 44  PLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCG-SFYDAV 102

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            VF+ M  +   +W  +I     +G     + ++KEM + GV ++ ++F   ++AC +  
Sbjct: 103 KVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFK 162

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE--MTEKDLITWNTI 286
               G  IH   +K G+G  + V N+++ MY +   L  A   FD   M + D ++WN+I
Sbjct: 163 ERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSI 222

Query: 287 IAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+ +   G S E L++F +M+      N +TF S + AC     +  G+ +HA I++   
Sbjct: 223 ISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNH 282

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             ++ ++NALI MYA CG + D++++F  M  +D V+W +++ G   +    +AI  F +
Sbjct: 283 FTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQD 342

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M  SG +PD++  + ++ A   +  +  G++       + ++ N  I   ++D+ G+   
Sbjct: 343 MQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCC 402

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLP----NLGKLAALRVLDLKPNMMGTYII 521
           VK      + MP K D   W  ++    ++       NL +   L  +D+ P M+G+ ++
Sbjct: 403 VKYMGSAFEYMPEK-DLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILL 461



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 118/232 (50%), Gaps = 5/232 (2%)

Query: 47  ILATNLIKSYFDE-GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           IL  N I + + E  L++ AR +F+ +  +D+VSWT MI          +A  +F  ++ 
Sbjct: 487 ILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIE 546

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             + P+  TL SVL A   + SL     +HG  I++G      + NSL+D+YA C  +M+
Sbjct: 547 TNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCG-TME 605

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           NAR +FN +K ++ + WT++I      G G   + +F +M  E V  +  +F   + AC+
Sbjct: 606 NARNIFNYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACS 665

Query: 226 STGWVSFGKLIHAAVIKHGFG-SNLPVMNSIL-DMYCRFDCLSDANQYFDEM 275
            +G V  GK  H  ++K+ +     P   + L D+  R + L +A  +   M
Sbjct: 666 HSGLVVEGKQ-HFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNM 716



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 104/237 (43%), Gaps = 20/237 (8%)

Query: 317 FTSIIAACATLAALSCGQQVHAGIVR-RGLDGNLALANALIDMYAKCGNISDSQKIFSEM 375
           ++  +  CA+  AL  GQQ+HA  ++ +    ++ L    + MY KCG+  D+ K+F +M
Sbjct: 49  YSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKM 108

Query: 376 SDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGL 435
           S+R + TW +M+    + G   EAIEL+ EM   GV  D   F  VL AC        G 
Sbjct: 109 SERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGC 168

Query: 436 KYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESV-WGPLLGACKE 494
           +               +   ++ +  + G +  A  L  S   + D+ V W  ++ A   
Sbjct: 169 EIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISA--- 225

Query: 495 HRLPNLGKLAALRVLDLKPNMM------GTYIILSNIYAAEGKWEEFAKFRKIMRGM 545
               ++G+  +L  L L   M        TY  +S + A EG       F KI RG+
Sbjct: 226 ----HVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEG-----PTFIKIGRGI 273


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 192/545 (35%), Positives = 308/545 (56%), Gaps = 5/545 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y   G +  AR LFD+MP RD +SW  MI+GY   +   +   +F  M    ++P+
Sbjct: 176 LITMYVKCGDVVSARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPD 235

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
             T++SV+ AC+ +        +H   ++   +G+I V NSL+ +Y +       A  VF
Sbjct: 236 LMTMTSVISACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVG-HWKEAESVF 294

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           + M+ ++ VSWTT+I+G   +      L  +K M + G   +  + +  + ACAS G + 
Sbjct: 295 SGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLD 354

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            G  +H    + G    + V NS++DMY +   +  A + F ++ +KD+I+W ++I G  
Sbjct: 355 MGMKLHELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLR 414

Query: 292 KSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
            +    E L  F KM  +   PN  T  S ++ACA + AL CG+++HA  ++ G+  +  
Sbjct: 415 INNRCFEALIFFRKMILKS-KPNSVTLISALSACARVGALMCGKEIHAHALKAGMGFDGF 473

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           L NA++D+Y +CG +  +   F+ ++++D+  W  ++ GY   G G   +ELF  MV+S 
Sbjct: 474 LPNAILDLYVRCGRMRTALNQFN-LNEKDVGAWNILLTGYAQKGKGAMVMELFKRMVESE 532

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEA 469
           + PD + F+++L ACS +G+V EGL+YF+ M  +Y++ PN + Y CVVDLLGRAG++ EA
Sbjct: 533 INPDDVTFISLLCACSRSGMVTEGLEYFQRMKVNYHITPNLKHYACVVDLLGRAGKLNEA 592

Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529
           +E I+ MP KPD ++WG LL AC+ HR   LG+LAA  +       +G YI+L N+YA  
Sbjct: 593 HEFIERMPIKPDPAIWGALLNACRIHRHVLLGELAAQHIFKQDAESIGYYILLCNLYADS 652

Query: 530 GKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHM 589
           GKW+E AK R+ M+  G   + G SW+EV+ KV  F++ D      Q +  VLE     M
Sbjct: 653 GKWDEVAKVRRTMKEEGLIVDPGCSWVEVKGKVHAFLSGDNFHPQMQEINVVLEGFYEKM 712

Query: 590 NETAY 594
             + +
Sbjct: 713 KTSGF 717



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 113/423 (26%), Positives = 215/423 (50%), Gaps = 3/423 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L   L+  +   G +  A  +F  M ERD+ SW V++ GYT     ++A  ++  ++   
Sbjct: 71  LGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAG 130

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + P+ +T  SVL++C G   L     VH   ++   +  + V N+L+ +Y  C   + +A
Sbjct: 131 IRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCG-DVVSA 189

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R++F+ M  ++ +SW  +I+GY  +     GL +F  M    ++ +  + +  + AC   
Sbjct: 190 RMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELL 249

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
           G    G  +H+ V++  +  N+ V NS++ MY       +A   F  M  +D+++W TII
Sbjct: 250 GDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTII 309

Query: 288 AG-YEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           +G  +     + L  +  M+     P+  T  S+++ACA+L  L  G ++H    R G  
Sbjct: 310 SGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHI 369

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
             + +AN+LIDMY+KC  I  + +IF ++ D+D+++WTS++ G   +    EA+  F +M
Sbjct: 370 LYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKM 429

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
           +    +P+ +  ++ L+AC+  G +  G +         +  +  +   ++DL  R GR+
Sbjct: 430 ILKS-KPNSVTLISALSACARVGALMCGKEIHAHALKAGMGFDGFLPNAILDLYVRCGRM 488

Query: 467 KEA 469
           + A
Sbjct: 489 RTA 491



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 180/335 (53%), Gaps = 2/335 (0%)

Query: 146 SIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEM 205
           S+ + N+L+ ++      + NA  VF  M  ++  SW  L+ GY  +G     L ++  +
Sbjct: 68  SVRLGNALLSMFVRFG-DVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRI 126

Query: 206 LLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCL 265
           L  G+  + Y+F   +R+CA    +  G+ +HA V++  F  ++ V+N+++ MY +   +
Sbjct: 127 LWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDV 186

Query: 266 SDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAAC 324
             A   FD+M  +D I+WN +I+GY E     E L +F +M+     P+  T TS+I+AC
Sbjct: 187 VSARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISAC 246

Query: 325 ATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWT 384
             L     G Q+H+ +VR   DGN+++ N+LI MY   G+  +++ +FS M  RD+V+WT
Sbjct: 247 ELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWT 306

Query: 385 SMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDY 444
           +++ G   +    +A+E +  M  +G  PD +   +VL+AC+  G +D G+K  +     
Sbjct: 307 TIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERT 366

Query: 445 NVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
                  +   ++D+  +  R+++A E+   +P K
Sbjct: 367 GHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDK 401



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 177/348 (50%), Gaps = 6/348 (1%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
           +LI+ Y   G  +EA ++F  M  RDVVSWT +I+G       ++A   +  M      P
Sbjct: 276 SLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEITGTMP 335

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           +  T++SVL AC  +  L     +H +A + G    + V NSL+D+Y+  C  ++ A  +
Sbjct: 336 DEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVVANSLIDMYSK-CKRIEKALEI 394

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F+ +  K+ +SWT++I G   +   +  L  F++M+L+  + N  +   A+ ACA  G +
Sbjct: 395 FHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMILKS-KPNSVTLISALSACARVGAL 453

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
             GK IHA  +K G G +  + N+ILD+Y R   +  A   F+ + EKD+  WN ++ GY
Sbjct: 454 MCGKEIHAHALKAGMGFDGFLPNAILDLYVRCGRMRTALNQFN-LNEKDVGAWNILLTGY 512

Query: 291 EKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI-VRRGLDGN 348
            + G  +  + +F +M     +P+  TF S++ AC+    ++ G +    + V   +  N
Sbjct: 513 AQKGKGAMVMELFKRMVESEINPDDVTFISLLCACSRSGMVTEGLEYFQRMKVNYHITPN 572

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHGH 395
           L     ++D+  + G ++++ +    M  + D   W +++     H H
Sbjct: 573 LKHYACVVDLLGRAGKLNEAHEFIERMPIKPDPAIWGALLNACRIHRH 620



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 153/311 (49%), Gaps = 5/311 (1%)

Query: 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251
           SGN    L     M    + +    F   +R C +    S G+ +  AV+     + L V
Sbjct: 11  SGNLEQALKHLASMQEVKIPVEEDCFVALIRLCENKRGYSEGEYVWKAVLS-SLVTLLSV 69

Query: 252 M--NSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSE 308
              N++L M+ RF  + +A   F  M E+DL +WN ++ GY K+G   E L ++ ++   
Sbjct: 70  RLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWA 129

Query: 309 RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDS 368
              P+ +TF S++ +CA    L  G++VHA +VR   D ++ + NALI MY KCG++  +
Sbjct: 130 GIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSA 189

Query: 369 QKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHA 428
           + +F +M  RD ++W +M+ GY  +    E +ELF  M +  + PD +   +V++AC   
Sbjct: 190 RMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELL 249

Query: 429 GLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPL 488
           G    G +    +     + N  +Y  ++ +    G  KEA  +   M  + D   W  +
Sbjct: 250 GDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECR-DVVSWTTI 308

Query: 489 LGACKEHRLPN 499
           +  C ++ LP+
Sbjct: 309 ISGCVDNLLPD 319



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 123/243 (50%), Gaps = 5/243 (2%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++A +LI  Y     IE+A  +F ++P++DV+SWT +I G    N   +A   F +M+  
Sbjct: 373 VVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMILK 432

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
              PN+ TL S L AC  + +L     +H  A+K G+    ++ N+++D+Y  C   M  
Sbjct: 433 S-KPNSVTLISALSACARVGALMCGKEIHAHALKAGMGFDGFLPNAILDLYVRCG-RMRT 490

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A   FN +  K+  +W  L+TGYA  G G   + +FK M+   +  +  +F   + AC+ 
Sbjct: 491 ALNQFN-LNEKDVGAWNILLTGYAQKGKGAMVMELFKRMVESEINPDDVTFISLLCACSR 549

Query: 227 TGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLITWN 284
           +G V+ G +      + +    NL     ++D+  R   L++A+++ + M  K D   W 
Sbjct: 550 SGMVTEGLEYFQRMKVNYHITPNLKHYACVVDLLGRAGKLNEAHEFIERMPIKPDPAIWG 609

Query: 285 TII 287
            ++
Sbjct: 610 ALL 612


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 190/566 (33%), Positives = 320/566 (56%), Gaps = 5/566 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++  +LI  Y     + EA+ LFD+  ++++VSW  MI GY       + + +  +M   
Sbjct: 240 MVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTE 299

Query: 107 EVNPNA--FTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
           +    A  FT+ +VL  C     L +   +HG + + GL+ +  V N+ +  Y T C ++
Sbjct: 300 DAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAY-TRCGAL 358

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
            ++  VF+ M  K   SW  L+ GYA + +    L ++ +M   G++ + ++    + AC
Sbjct: 359 CSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLAC 418

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           +    + +G+ IH   +++G   +  +  S+L +Y        A   FD M  + L++WN
Sbjct: 419 SRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWN 478

Query: 285 TIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +IAGY ++G   E +N+F +M S+   P       +  AC+ L+AL  G+++H   ++ 
Sbjct: 479 VMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKA 538

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
            L  ++ +++++IDMYAK G I  SQ+IF  + ++D+ +W  ++ GYG HG GKEA+ELF
Sbjct: 539 HLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELF 598

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGR 462
           ++M++ G++PD   F  +L ACSHAGLV++GL+YF  M N +N+ P  E Y CVVD+LGR
Sbjct: 599 EKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGR 658

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AGR+ +A  LI+ MP  PD  +W  LL +C+ H    LG+  A ++L+L+P     Y+++
Sbjct: 659 AGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLI 718

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           SN++A  GKW++  + R  M+ +G +K+ G SWIEV  KV  F+  D+M    + V    
Sbjct: 719 SNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETW 778

Query: 583 EMLIRHMNETAYEPDIDCLIHDLEGE 608
             L   ++   Y PD   ++HDLE E
Sbjct: 779 RRLEVKISSIGYTPDTGSVLHDLEEE 804



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 122/415 (29%), Positives = 214/415 (51%), Gaps = 19/415 (4%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR- 105
           +L T +I  Y   G   ++R +FD++  +++  W  +++ YT       A ++F E++  
Sbjct: 35  VLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISV 94

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
            E  P+ FTL  V+KAC G+  L    ++HGMA K  L   ++V N+L+ +Y  C + ++
Sbjct: 95  TEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGL-VE 153

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLL--EGVEMNPYSFSIAVRA 223
            A  VF  M  +N VSW ++I G++ +G        F+EML+  E    +  +    +  
Sbjct: 154 EAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPV 213

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMY--CRFDCLSDANQYFDEMTEKDLI 281
           CA    +  G  +H   +K G    L V NS++DMY  CRF  LS+A   FD+  +K+++
Sbjct: 214 CAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRF--LSEAQLLFDKNDKKNIV 271

Query: 282 TWNTIIAGYEKSGS-SECLNMFSKMKSE--RFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           +WN++I GY +         +  KM++E  +   + FT  +++  C   + L   +++H 
Sbjct: 272 SWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHG 331

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
              R GL  N  +ANA I  Y +CG +  S+++F  M  + + +W +++ GY  +   ++
Sbjct: 332 YSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRK 391

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACS-----HAGLVDEGLKYFKSMNDYNVNP 448
           A++L+ +M  SG+ PD     ++L ACS     H G   E +  F   N   V+P
Sbjct: 392 ALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYG---EEIHGFALRNGLAVDP 443



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 100/392 (25%), Positives = 187/392 (47%), Gaps = 17/392 (4%)

Query: 118 VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK 177
           +L+AC   K +     +H M        + +V N+ +    + C S  ++R+VF+ ++ K
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63

Query: 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI--AVRACASTGWVSFGKL 235
           N   W  +++ Y  +      + +F E L+   E  P +F++   ++ACA    +  G++
Sbjct: 64  NLFQWNAIVSAYTRNELFEDAMSIFSE-LISVTEHKPDNFTLPCVIKACAGLLDLGLGQI 122

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS 295
           IH    K    S++ V N+++ MY +   + +A + F+ M E++L++WN+II G+ ++G 
Sbjct: 123 IHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGF 182

Query: 296 -SECLNMFSKM--KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
             E  N F +M    E F P+  T  +++  CA    +  G  VH   V+ GL+  L + 
Sbjct: 183 LQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVN 242

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV--KSG 410
           N+LIDMY+KC  +S++Q +F +   +++V+W SM+ GY           L  +M    + 
Sbjct: 243 NSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAK 302

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYN----VNPNKEIYGCVVDLLGRAGRV 466
           ++ D    + VL  C    L    L+  K ++ Y+    +  N+ +    +    R G +
Sbjct: 303 MKADEFTILNVLPVC----LERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGAL 358

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLP 498
             +  +   M  K   S W  LL    ++  P
Sbjct: 359 CSSERVFDLMDTKTVSS-WNALLCGYAQNSDP 389



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 137/278 (49%), Gaps = 6/278 (2%)

Query: 219 IAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNS-ILDMYCRFDCLSDANQYFDEMTE 277
           + ++AC     +  G+ +H  V       N  V+N+ I+ MY      SD+   FD++  
Sbjct: 3   VLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRR 62

Query: 278 KDLITWNTIIAGYEKSGSSE-CLNMFSKMKS-ERFSPNCFTFTSIIAACATLAALSCGQQ 335
           K+L  WN I++ Y ++   E  +++FS++ S     P+ FT   +I ACA L  L  GQ 
Sbjct: 63  KNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQI 122

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
           +H    +  L  ++ + NALI MY KCG + ++ K+F  M +R+LV+W S++ G+  +G 
Sbjct: 123 IHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGF 182

Query: 396 GKEAIELFDEMV--KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIY 453
            +E+   F EM+  +    PD    + VL  C+    +++G+          +N    + 
Sbjct: 183 LQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVN 242

Query: 454 GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
             ++D+  +   + EA +L+     K +   W  ++G 
Sbjct: 243 NSLIDMYSKCRFLSEA-QLLFDKNDKKNIVSWNSMIGG 279


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 203/575 (35%), Positives = 315/575 (54%), Gaps = 40/575 (6%)

Query: 62  IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM-VRNEVNPNAFTLSSVLK 120
           +  AR LFD+MPERDVVSW  M++GY       +A  +F EM  +N ++ N    + V  
Sbjct: 127 LRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQN 186

Query: 121 A-CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179
              +  + L  +     +     + G     N L+D           AR +F+ M  +++
Sbjct: 187 GRIEDARRLFESKADWELISWNCMMGGYVKRNRLVD-----------ARGIFDRMPERDE 235

Query: 180 VSWTTLITGYAHSGNGYGGLGVFKE----------MLLEGVEMN-------------PYS 216
           VSW T+I+GYA +G       +F+E           ++ G   N             P  
Sbjct: 236 VSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEK 295

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFG-SNLPVMNSILDMYCRFDCLSDANQYFDEM 275
            S++  A  + G+V   ++  A  +       N+   N+++  Y +   ++ A  +FD M
Sbjct: 296 NSVSWNAIIA-GYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRM 354

Query: 276 TEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334
            ++D I+W  IIAGY +SG   E L++F +MK +    N  TFTS ++ CA +AAL  G+
Sbjct: 355 PQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGK 414

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
           QVH  +V+ GL+    + NAL+ MY KCGNI D+  +F  + ++++V+W +M+ GY  HG
Sbjct: 415 QVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHG 474

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIY 453
            GKEA+ LF+ M K+G+ PD +  + VL+ACSH GLVD+G +YF SM  DY +  N + Y
Sbjct: 475 FGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHY 534

Query: 454 GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513
            C++DLLGRAGR+ +A  L+K+MPF+PD + WG LLGA + H    LG+ AA  + +++P
Sbjct: 535 TCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEP 594

Query: 514 NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGS 573
           +  G Y++LSN+YAA G+W +  + R  MR  G KK  G SW+EV++K+  F   D +  
Sbjct: 595 DNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHP 654

Query: 574 HTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
               +Y  LE L   M +  Y      ++HD+E E
Sbjct: 655 ERDRIYTFLEELDLKMKKEGYVSSTKLVLHDVEEE 689



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 110/373 (29%), Positives = 183/373 (49%), Gaps = 17/373 (4%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P+   +    +I  Y   G + EA+ LF+E P RDV +WT M++GY      ++A  VF
Sbjct: 230 MPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVF 289

Query: 101 VEMV-RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
             M  +N V+ NA     V   CK M       L   M  +     ++   N+++  YA 
Sbjct: 290 DGMPEKNSVSWNAIIAGYV--QCKRMDQARE--LFEAMPCQ-----NVSSWNTMITGYAQ 340

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
               +  AR  F+ M  ++ +SW  +I GYA SG G   L +F EM  +G  +N  +F+ 
Sbjct: 341 NG-DIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTS 399

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
            +  CA    +  GK +H  V+K G  S   V N++L MYC+   + DA   F+ + EK+
Sbjct: 400 TLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKE 459

Query: 280 LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           +++WNT+IAGY + G   E L +F  MK     P+  T   +++AC+    +  G +   
Sbjct: 460 VVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFY 519

Query: 339 GIVRR-GLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGH- 395
            + +  G+  N      +ID+  + G + D+Q +   M  + D  TW +++     HG+ 
Sbjct: 520 SMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNT 579

Query: 396 --GKEAIELFDEM 406
             G++A ++  EM
Sbjct: 580 ELGEKAAKMIFEM 592



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 138/298 (46%), Gaps = 31/298 (10%)

Query: 276 TEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334
           T+ D++ WN  I  + ++G  +  L +F+ M       +  ++ ++I+ C +       +
Sbjct: 45  TDADIVKWNIAITNHMRNGQCDSALRLFNSMPRR----SSISWNAMISGCLSNDKFYLAR 100

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
           Q+   +  R    +L   N +I    +  N+  ++ +F +M +RD+V+W +M+ GY  +G
Sbjct: 101 QLFEKMPTR----DLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNG 156

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG 454
           + KEA E+FDEM       + I +  +L A    G +++  + F+S  D+ +      + 
Sbjct: 157 YVKEAKEIFDEMPCK----NSISWNGMLAAYVQNGRIEDARRLFESKADWELIS----WN 208

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP- 513
           C++    +  R+ +A  +   MP + DE  W  ++    +    N   L A R+ +  P 
Sbjct: 209 CMMGGYVKRNRLVDARGIFDRMPER-DEVSWNTMISGYAQ----NGELLEAQRLFEESPV 263

Query: 514 NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKM 571
             + T+  + + Y   G  +E    R++  GM  K  V  SW  +   + G++   +M
Sbjct: 264 RDVFTWTAMVSGYVQNGMLDE---ARRVFDGMPEKNSV--SWNAI---IAGYVQCKRM 313


>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 721

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 189/561 (33%), Positives = 314/561 (55%), Gaps = 10/561 (1%)

Query: 45  PSILATNLI-KSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           P++ + N+I K+Y  +  I  AR LFDE P+ D VS+  +I+GY        A  +F  M
Sbjct: 72  PNVFSYNVIVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRM 131

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
                  + FTLS ++ AC     L     +H  A+  G +    V N+ +  Y+   + 
Sbjct: 132 RELGFEVDGFTLSGLIAACCDRVDLIKQ--LHCFAVSGGFDSYSSVNNAFVTYYSKGGLL 189

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
            +   + +     +++VSW ++I  Y     G   L ++KEM+ +G +++ ++ +  + A
Sbjct: 190 REAVSVFYGMDGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNA 249

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR---FDCLSDANQYFDEMTEKDL 280
             S   +  G+  H  +IK GF  N  V + ++D Y +    D +SD+ + F E+   DL
Sbjct: 250 LTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSPDL 309

Query: 281 ITWNTIIAGYE--KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           + WNT+I+GY   +  S E +  F +M+     P+  +F  + +AC+ L++ S G+Q+H 
Sbjct: 310 VLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQGKQIHG 369

Query: 339 GIVRRGLDGN-LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
             ++  +  N +++ NALI +Y K GN+ D++++F  M + + V++  M+ GY  HGHG 
Sbjct: 370 LAIKSNIPSNRISVNNALISLYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYAQHGHGT 429

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCV 456
           EA+ L+  M+ SG+ P+ I F+A+L+AC+H G VDEG KYF +M + + + P  E Y C+
Sbjct: 430 EALRLYQRMLDSGIAPNNITFVAILSACAHCGKVDEGQKYFNTMKETFKIEPEAEHYSCM 489

Query: 457 VDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMM 516
           +DLLGRAG+++EA   I +MP+KP    W  LLGAC++H+   L + AA  ++ ++P   
Sbjct: 490 IDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAAKELMVMQPLAA 549

Query: 517 GTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQ 576
             Y++L+N+YA  GKWEE A  RK MRG   +K+ G SWIEV+ K   F+A D      +
Sbjct: 550 TPYVMLANMYADAGKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIR 609

Query: 577 YVYGVLEMLIRHMNETAYEPD 597
            V   LE +++ M +  Y  D
Sbjct: 610 EVNEYLEEMMKKMKKVGYVMD 630



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 132/293 (45%), Gaps = 39/293 (13%)

Query: 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSD------------------------- 267
           GK +HA  +K    S+  + N  +++Y +  CLS                          
Sbjct: 27  GKSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDSTEEPNVFSYNVIVKAYAK 86

Query: 268 ------ANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSI 320
                 A Q FDE  + D +++NT+I+GY  +  +   + +F +M+   F  + FT + +
Sbjct: 87  DSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMRELGFEVDGFTLSGL 146

Query: 321 IAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD-RD 379
           IAAC     L   +Q+H   V  G D   ++ NA +  Y+K G + ++  +F  M   RD
Sbjct: 147 IAACCDRVDLI--KQLHCFAVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDGLRD 204

Query: 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439
            V+W SM++ YG H  G +A+ L+ EM+  G + D     +VL A +    +  G ++  
Sbjct: 205 EVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHG 264

Query: 440 SMNDYNVNPNKEIYGCVVDLLGRAG---RVKEAYELIKSMPFKPDESVWGPLL 489
            +     + N  +   ++D   + G    + ++ ++ + +   PD  +W  ++
Sbjct: 265 KLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEI-LSPDLVLWNTMI 316



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 42/82 (51%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           IP     +   LI  Y+  G + +AR +FD MPE + VS+  MI GY       +A  ++
Sbjct: 376 IPSNRISVNNALISLYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYAQHGHGTEALRLY 435

Query: 101 VEMVRNEVNPNAFTLSSVLKAC 122
             M+ + + PN  T  ++L AC
Sbjct: 436 QRMLDSGIAPNNITFVAILSAC 457



 Score = 44.3 bits (103), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 43/216 (19%), Positives = 84/216 (38%), Gaps = 41/216 (18%)

Query: 316 TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNIS--------- 366
           +F  ++        L  G+ +HA  V+  +  +  L+N  +++Y+KCG +S         
Sbjct: 10  SFRDLLLKSVAERDLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDST 69

Query: 367 -----------------DSQ-----KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
                            DS+     ++F E    D V++ +++ GY        A+ LF 
Sbjct: 70  EEPNVFSYNVIVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFK 129

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCV----VDLL 460
            M + G   D      ++ AC       + +   K ++ + V+   + Y  V    V   
Sbjct: 130 RMRELGFEVDGFTLSGLIAACC------DRVDLIKQLHCFAVSGGFDSYSSVNNAFVTYY 183

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR 496
            + G ++EA  +   M    DE  W  ++ A  +H+
Sbjct: 184 SKGGLLREAVSVFYGMDGLRDEVSWNSMIVAYGQHK 219


>gi|125529196|gb|EAY77310.1| hypothetical protein OsI_05285 [Oryza sativa Indica Group]
          Length = 785

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 188/557 (33%), Positives = 316/557 (56%), Gaps = 11/557 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            ++ +L+  Y   G + EAR +FD   ERD VSW  +++GY       +   VF  M R 
Sbjct: 145 FVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRG 204

Query: 107 EVNPNAFTLSSVLKAC--KGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
            +  N+F L SV+K C  +G  ++  A  VHG  IK GL+  +++ ++++D+YA     +
Sbjct: 205 GMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALV 264

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYG------GLGVFKEMLLEGVEMNPYSFS 218
           + A L F  ++  N V + T+I G+  +    G       L ++ E+   G++   ++FS
Sbjct: 265 EAAAL-FRSVQEPNVVMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFS 323

Query: 219 IAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK 278
             +RAC   G++ FGK IH  VIK+ F  +  + ++++D+Y    C+ D  + F    + 
Sbjct: 324 SVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKH 383

Query: 279 DLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
           D++TW  +++G  ++   E  L++F +       P+ FT +S++ ACA+LA    G+Q+ 
Sbjct: 384 DIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQ 443

Query: 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
               + G D    + N+ + MYA+ G++  + + F EM   D+V+W++++  +  HG  +
Sbjct: 444 CFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCAR 503

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCV 456
           +A+  FDEMV + V P+ I F+ VLTACSH GLVDEGL+Y+++MN DY ++P  +   CV
Sbjct: 504 DALHFFDEMVDAKVVPNEITFLGVLTACSHGGLVDEGLRYYETMNKDYGLSPTIKHCTCV 563

Query: 457 VDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMM 516
           VDLLGRAGR+ +A   I +  F  D  +W  LL +C+ HR    G+L A R+++L+P   
Sbjct: 564 VDLLGRAGRLADAEAFISNGIFHADPVIWRSLLASCRIHRDLERGQLVANRIMELEPTSS 623

Query: 517 GTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQ 576
            +Y+IL N+Y   G+    +K R +M+  G KKE G+SWIE++  V  F+A DK    + 
Sbjct: 624 ASYVILYNMYLDAGELSLASKTRDLMKQRGVKKEPGLSWIELKCGVHSFVAGDKSHPESS 683

Query: 577 YVYGVLEMLIRHMNETA 593
            +Y  LE ++  + + A
Sbjct: 684 AIYTKLEEMLSRIEKLA 700



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 129/468 (27%), Positives = 231/468 (49%), Gaps = 21/468 (4%)

Query: 42  PKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFV 101
           P     L   L+ +Y   G    AR L DEMP R+ VS+ ++I  Y+       +     
Sbjct: 39  PAASLFLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLA 98

Query: 102 EMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
              R  V+ + F+ ++ L AC     L     VH +AI +GL   ++V NSL+ +Y+ C 
Sbjct: 99  RARRAGVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCG 158

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
             M  AR VF+  + ++DVSW +L++GY  +G     + VF  M   G+ +N ++    +
Sbjct: 159 -EMGEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVI 217

Query: 222 RACAST--GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
           + C+    G +   + +H  VIK G  S++ ++++++DMY +   L +A   F  + E +
Sbjct: 218 KCCSGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPN 277

Query: 280 LITWNTIIAGY-------EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSC 332
           ++ +NT+IAG+        K  +SE L ++S+++S    P  FTF+S++ AC     L  
Sbjct: 278 VVMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEF 337

Query: 333 GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA 392
           G+Q+H  +++     +  + +ALID+Y   G + D  + F      D+VTWT+M+ G   
Sbjct: 338 GKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQ 397

Query: 393 HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG--LKYFKS---MNDYNVN 447
           +   ++A+ LF E + +G++PD     +V+ AC+   +   G  ++ F +    + + V 
Sbjct: 398 NELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVM 457

Query: 448 PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            N       V +  R+G V  A    + M    D   W  ++    +H
Sbjct: 458 GNS-----CVHMYARSGDVDAATRRFQEME-SHDVVSWSAVISCHAQH 499



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 186/362 (51%), Gaps = 11/362 (3%)

Query: 145 GSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKE 204
            S+++ N+L+  Y      +  AR + ++M  +N VS+  LI  Y+  G     L     
Sbjct: 41  ASLFLRNTLLAAYCRLGGPLP-ARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLAR 99

Query: 205 MLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264
               GV+++ +S++ A+ AC+  G +  G+ +HA  I  G  S + V NS++ MY +   
Sbjct: 100 ARRAGVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGE 159

Query: 265 LSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAA 323
           + +A + FD   E+D ++WN++++GY ++G+  E + +F+ M+      N F   S+I  
Sbjct: 160 MGEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKC 219

Query: 324 CATL--AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLV 381
           C+      +   + VH  +++ GLD ++ L +A+IDMYAK G + ++  +F  + + ++V
Sbjct: 220 CSGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVV 279

Query: 382 TWTSMMIGYG------AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGL 435
            + +M+ G+             EA+ L+ E+   G++P    F +VL AC+ AG ++ G 
Sbjct: 280 MFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGK 339

Query: 436 KYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           +    +  Y    +  I   ++DL   +G +++ +   +S P K D   W  ++  C ++
Sbjct: 340 QIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSP-KHDIVTWTAMVSGCVQN 398

Query: 496 RL 497
            L
Sbjct: 399 EL 400



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 11/99 (11%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           +++  + +  Y   G ++ A   F EM   DVVSW+ +I+ +    C   A   F EMV 
Sbjct: 455 TVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVD 514

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLE 144
            +V PN  T   VL AC            HG  + EGL 
Sbjct: 515 AKVVPNEITFLGVLTACS-----------HGGLVDEGLR 542


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 201/597 (33%), Positives = 321/597 (53%), Gaps = 37/597 (6%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +L   ++  +FD   +  A ++F+   E +++ W  M+ G  S +       ++V MV  
Sbjct: 20  LLELCVVSPHFDG--LPYAVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSX 77

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA-------- 158
              PNA+T   +LK+C   K+      +H   +K G E   Y   SL+ +YA        
Sbjct: 78  GHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDA 137

Query: 159 ------------TCCISM----------DNARLVFNDMKWKNDVSWTTLITGYAHSGNGY 196
                         C ++           +AR VF+ +  ++ VSW  +ITGY  +    
Sbjct: 138 RKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYE 197

Query: 197 GGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI-KHGFGSNLPVMNSI 255
             L +FKEM+   V  +  +    + ACA +G +  G+ IH  V   HGFGS+L ++N+ 
Sbjct: 198 EALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAF 257

Query: 256 LDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNC 314
           + +Y +   +  A+  F+ ++ KD+++WNT+I GY       E L +F +M     SPN 
Sbjct: 258 IGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPND 317

Query: 315 FTFTSIIAACATLAALSCGQQVHAGIVRR--GLDGNLALANALIDMYAKCGNISDSQKIF 372
            T  S++ ACA L A+  G+ +H  I +R  G+    AL  +LIDMYAKCG+I  + ++F
Sbjct: 318 VTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVF 377

Query: 373 SEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD 432
           + M  + L +W +M+ G+  HG    A +LF  M K+G+ PD I  + +L+ACSH+GL+D
Sbjct: 378 NSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLD 437

Query: 433 EGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
            G   FKS+  DYN+ P  E YGC++DLLG AG  KEA E+I  MP +PD  +W  LL A
Sbjct: 438 LGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKA 497

Query: 492 CKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEV 551
           CK H    L +  A ++++++P   G+Y++LSNIYA  G+WE+ A+ R+++ G G KK  
Sbjct: 498 CKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVP 557

Query: 552 GMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           G S IE+   V  FI  DK+   ++ +Y +LE +   + E  + PD   ++ ++E E
Sbjct: 558 GCSSIEIDSVVHEFIIGDKLHPQSREIYRMLEEMDVLLEEAGFVPDTSEVLQEMEEE 614


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 188/561 (33%), Positives = 312/561 (55%), Gaps = 21/561 (3%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
            L+ +Y   GL+  AR +F EM ++D V++  M+ G +    H QA  +F  M R   + 
Sbjct: 389 TLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYSR 448

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNARL 169
           +   L     +    +S S + L            +++V NSL+D Y+ C C  +D+ R 
Sbjct: 449 HPLHLLQYSHS----RSRSTSVL------------NVFVNNSLLDFYSKCDC--LDDMRR 490

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           +F++M  +++VS+  +I  YA +      L +F+EM   G +     ++  +    S   
Sbjct: 491 LFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPD 550

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           V  GK IHA ++  G  S   + N+++DMY +   L  A   F   +EK  I+W  +I G
Sbjct: 551 VHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITG 610

Query: 290 YEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           Y ++G   E L +FS M+     P+  TF+SII A ++LA +  G+Q+H+ ++R G   +
Sbjct: 611 YVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSS 670

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           +   + L+DMYAKCG + ++ + F EM +R+ ++W +++  Y  +G  K AI++F+ M+ 
Sbjct: 671 VFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLH 730

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVK 467
            G  PD + F++VL ACSH GL DE +KYF  M + Y+++P KE Y CV+D LGR G   
Sbjct: 731 CGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFS 790

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527
           +  +++  MPFK D  +W  +L +C+ H    L ++AA ++  ++P     Y+ILSNIYA
Sbjct: 791 QVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYA 850

Query: 528 AEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIR 587
             G+WE+ A  +KIMR  G +KE G SW+E++ K+  F +ND        +   L+ L +
Sbjct: 851 RAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYK 910

Query: 588 HMNETAYEPDIDCLIHDLEGE 608
            M++  Y+PDI C +H ++ E
Sbjct: 911 EMDKQGYKPDITCALHMVDHE 931



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 128/450 (28%), Positives = 223/450 (49%), Gaps = 29/450 (6%)

Query: 46  SILATNLIKS-YFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
           +I + NLI S Y   G +  A+ LF   P R+  +WT+M+  + +    + A ++F  M+
Sbjct: 287 NIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAML 346

Query: 105 RNEVNPNAFTLSSVLK--ACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
              V P+  T+++VL    C           +H  AIK GL+  ++V N+L+D Y    +
Sbjct: 347 GEGVIPDRVTVTTVLNLPGC-------TVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGL 399

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            +  AR VF +M  K+ V++  ++ G +  G     L +F  M   G   +P        
Sbjct: 400 -LAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYSRHPLHLL---- 454

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
                   S  +    +V+      N+ V NS+LD Y + DCL D  + FDEM E+D ++
Sbjct: 455 ------QYSHSRSRSTSVL------NVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVS 502

Query: 283 WNTIIAGYE-KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           +N IIA Y     ++  L +F +M+   F      + ++++   +L  +  G+Q+HA +V
Sbjct: 503 YNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLV 562

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
             GL     L NALIDMY+KCG +  ++  FS  S++  ++WT+++ GY  +G  +EA++
Sbjct: 563 LLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQ 622

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461
           LF +M ++G+RPDR  F +++ A S   ++  G +    +       +      +VD+  
Sbjct: 623 LFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYA 682

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
           + G + EA      MP +   S W  ++ A
Sbjct: 683 KCGCLDEALRTFDEMPERNSIS-WNAVISA 711



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 117/253 (46%), Gaps = 3/253 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +L   LI  Y   G+++ A++ F    E+  +SWT +I GY     H +A  +F +M R 
Sbjct: 571 LLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRA 630

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + P+  T SS++KA   +  +     +H   I+ G + S++  + L+D+YA C   +D 
Sbjct: 631 GLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGC-LDE 689

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A   F++M  +N +SW  +I+ YAH G     + +F+ ML  G   +  +F   + AC+ 
Sbjct: 690 ALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSH 749

Query: 227 TGWV-SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLITWN 284
            G      K  H    ++           ++D   R  C S   +   EM  K D I W 
Sbjct: 750 NGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWT 809

Query: 285 TIIAGYEKSGSSE 297
           +I+      G+ E
Sbjct: 810 SILHSCRIHGNQE 822



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 101/207 (48%), Gaps = 14/207 (6%)

Query: 207 LEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLS 266
           + G ++  Y  ++ +R+  S+G +   +    A+       N+  +N IL  Y     L 
Sbjct: 250 VTGFDVLTYRLNLGLRSLLSSGHLHRAR----AMFDQMPHKNIFSLNLILSAYSSSGDLP 305

Query: 267 DANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSII--AA 323
            A   F     ++  TW  ++  +  +G +S+ L++F  M  E   P+  T T+++    
Sbjct: 306 AAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPG 365

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTW 383
           C           +H   ++ GLD ++ + N L+D Y K G ++ ++++F EM D+D VT+
Sbjct: 366 CTV-------PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTY 418

Query: 384 TSMMIGYGAHGHGKEAIELFDEMVKSG 410
            +MM+G    G   +A++LF  M ++G
Sbjct: 419 NAMMMGCSKEGLHTQALQLFAAMRRAG 445


>gi|449524410|ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 684

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 190/524 (36%), Positives = 308/524 (58%), Gaps = 9/524 (1%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAW---TVFVEMVRNEV 108
           L+ +Y   G ++    +F+E  E++ VSW  +I G     C  + W     F  M+    
Sbjct: 153 LVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLA---CKGRCWDALNAFRMMIDAGA 209

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
            PN+ T+SS+L     ++       +HG +++ G E  I++ NSL+D+YA    S + A 
Sbjct: 210 QPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTE-AS 268

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            +F+++  +N VSW  +I  YA +      +    +M   G   N  +F+  + ACA  G
Sbjct: 269 TIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLG 328

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
           ++  GK IHA  ++ G  S+L V NS++DMY +  CL  A   F+  + KD +++N +I 
Sbjct: 329 FLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFN-TSRKDEVSYNILII 387

Query: 289 GY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           GY E     + LN+FS+M+     P+  +F  +I+ACA LAAL  G++VH   +R  L  
Sbjct: 388 GYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYS 447

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           +L ++N+L+D Y KCG I  + ++F+++  +D+ +W +M++GYG  G  + AI +F+ M 
Sbjct: 448 HLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMR 507

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
              V+ D + ++AVL+ACSH GLV+ G +YF  M    + P +  Y C+VDLLGRAG V+
Sbjct: 508 DDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQRLEPTEMHYTCMVDLLGRAGFVE 567

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527
           EA +LI+ +P  PD ++WG LLGAC+ +    LG+ AA  + +LKP   G YI+LSNIYA
Sbjct: 568 EAAKLIQQLPIAPDANIWGALLGACRIYGNVELGRRAAEHLFELKPQHCGYYILLSNIYA 627

Query: 528 AEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKM 571
             G+W+E  K R++M+  G+KK  G SW+++ D+V  F+A +++
Sbjct: 628 ETGRWDEANKIRELMKSRGAKKNPGCSWVQIYDQVHAFVAEERV 671



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 129/444 (29%), Positives = 233/444 (52%), Gaps = 5/444 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV-RN 106
           +   L+  Y + G + +AR LFDEMPERDVVSW  +I   +    + +A   +  M+ R+
Sbjct: 47  VGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRS 106

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + PN  ++ S+L     ++       +H  ++K GL+  +   N+L+D Y  C  S+  
Sbjct: 107 VIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCG-SVKA 165

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
              VFN+   KN+VSW ++I G A  G  +  L  F+ M+  G + N  + S  +     
Sbjct: 166 LWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVE 225

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
                 GK IH   ++ G  +++ + NS++DMY +    ++A+  F  +  +++++WN +
Sbjct: 226 LECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAM 285

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           IA Y  +    E +    +M+     PN  TFT+++ ACA L  L  G+++HA  VR GL
Sbjct: 286 IANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGL 345

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             +L ++N+LIDMYAKCG +  ++ +F+  S +D V++  ++IGY       +++ LF E
Sbjct: 346 TSDLFVSNSLIDMYAKCGCLHSARNVFN-TSRKDEVSYNILIIGYSETDDCLQSLNLFSE 404

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M   G +PD + F+ V++AC++   + +G +        ++  +  +   ++D   + GR
Sbjct: 405 MRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKCGR 464

Query: 466 VKEAYELIKSMPFKPDESVWGPLL 489
           +  A  L   + FK D + W  ++
Sbjct: 465 IDIACRLFNQILFK-DVASWNTMI 487



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 128/443 (28%), Positives = 214/443 (48%), Gaps = 51/443 (11%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A +LI  Y   G   EA T+F  +  R++VSW  MIA Y       +A    ++M    
Sbjct: 250 IANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETG 309

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
             PNA T ++VL AC  +  L     +H M ++ GL   ++V NSL+D+YA C   + +A
Sbjct: 310 ECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCG-CLHSA 368

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R VFN  + K++VS+  LI GY+ + +    L +F EM L G + +  SF   + ACA+ 
Sbjct: 369 RNVFNTSR-KDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANL 427

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  GK +H   +++   S+L V NS+LD Y +   +  A + F+++  KD+ +WNT+I
Sbjct: 428 AALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMI 487

Query: 288 AGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            GY   G  E  ++MF  M+ +    +  ++ ++++AC+           H G+V RG  
Sbjct: 488 LGYGMIGELETAISMFEAMRDDTVQYDLVSYIAVLSACS-----------HGGLVERGW- 535

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDL----VTWTSMMIGYGAHGHGKEAIEL 402
                                  + FSEM  + L    + +T M+   G  G  +EA +L
Sbjct: 536 -----------------------QYFSEMLAQRLEPTEMHYTCMVDLLGRAGFVEEAAKL 572

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK-EIYGCVVDLLG 461
             ++    + PD  ++ A+L AC   G V+ G +  + +  + + P     Y  + ++  
Sbjct: 573 IQQL---PIAPDANIWGALLGACRIYGNVELGRRAAEHL--FELKPQHCGYYILLSNIYA 627

Query: 462 RAGRVKEA---YELIKSMPFKPD 481
             GR  EA    EL+KS   K +
Sbjct: 628 ETGRWDEANKIRELMKSRGAKKN 650



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 113/425 (26%), Positives = 204/425 (48%), Gaps = 7/425 (1%)

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           MVR  V  +  T   VLK C     +     VHG+  K G +  +YV N+L+ +Y  C  
Sbjct: 1   MVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGF 60

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGV-EMNPYSFSIAV 221
            +++AR +F++M  ++ VSW T+I   + +G+       +  M+L  V + N  S    +
Sbjct: 61  -LNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLL 119

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
              A+       + IH   +K G  S +   N+++D Y +   +    Q F+E  EK+ +
Sbjct: 120 PISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEV 179

Query: 282 TWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           +WN+II G    G   + LN F  M      PN  T +SI+     L     G+++H   
Sbjct: 180 SWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFS 239

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           +R G + ++ +AN+LIDMYAK G+ +++  IF  +  R++V+W +M+  Y  +    EAI
Sbjct: 240 MRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAI 299

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLL 460
               +M ++G  P+ + F  VL AC+  G +  G +         +  +  +   ++D+ 
Sbjct: 300 RFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMY 359

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR--LPNLGKLAALRVLDLKPNMMGT 518
            + G +  A  +  +   + DE  +  L+    E    L +L   + +R+L  KP+++  
Sbjct: 360 AKCGCLHSARNVFNTS--RKDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSF 417

Query: 519 YIILS 523
             ++S
Sbjct: 418 VGVIS 422


>gi|356529693|ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Glycine max]
          Length = 676

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 193/566 (34%), Positives = 329/566 (58%), Gaps = 5/566 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S L   LI  Y   G + EAR LFDE+P R +V+W  MI+ + S     +A   +  M+ 
Sbjct: 35  SFLGHKLIDGYIKCGSLAEARKLFDELPSRHIVTWNSMISSHISHGKSKEAVEFYGNMLM 94

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEG-SIYVENSLMDVYATCCISM 164
             V P+A+T S++ KA   +  + +    HG+A+  GLE    +V ++L+D+YA     M
Sbjct: 95  EGVLPDAYTFSAISKAFSQLGLIRHGQRAHGLAVVLGLEVLDGFVASALVDMYAKFD-KM 153

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
            +A LVF  +  K+ V +T LI GYA  G     L +F++M+  GV+ N Y+ +  +  C
Sbjct: 154 RDAHLVFRRVLEKDVVLFTALIVGYAQHGLDGEALKIFEDMVNRGVKPNEYTLACILINC 213

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
            + G +  G+LIH  V+K G  S +    S+L MY R + + D+ + F+++   + +TW 
Sbjct: 214 GNLGDLVNGQLIHGLVVKSGLESVVASQTSLLTMYSRCNMIEDSIKVFNQLDYANQVTWT 273

Query: 285 TIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           + + G  ++G  E  +++F +M     SPN FT +SI+ AC++LA L  G+Q+HA  ++ 
Sbjct: 274 SFVVGLVQNGREEVAVSIFREMIRCSISPNPFTLSSILQACSSLAMLEVGEQIHAITMKL 333

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           GLDGN     ALI++Y KCGN+  ++ +F  +++ D+V   SM+  Y  +G G EA+ELF
Sbjct: 334 GLDGNKYAGAALINLYGKCGNMDKARSVFDVLTELDVVAINSMIYAYAQNGFGHEALELF 393

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGR 462
           + +   G+ P+ + F+++L AC++AGLV+EG + F S+ N++N+    + + C++DLLGR
Sbjct: 394 ERLKNMGLVPNGVTFISILLACNNAGLVEEGCQIFASIRNNHNIELTIDHFTCMIDLLGR 453

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           + R++EA  LI+ +   PD  +W  LL +CK H    + +    ++L+L P   GT+I+L
Sbjct: 454 SRRLEEAAMLIEEVR-NPDVVLWRTLLNSCKIHGEVEMAEKVMSKILELAPGDGGTHILL 512

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           +N+YA+ GKW +  + +  +R +  KK   MSW++V  +V  F+A D     +  ++ +L
Sbjct: 513 TNLYASAGKWNQVIEMKSTIRDLKLKKSPAMSWVDVDREVHTFMAGDLSHPRSLEIFEML 572

Query: 583 EMLIRHMNETAYEPDIDCLIHDLEGE 608
             L++ +    Y P+   ++ DL+ E
Sbjct: 573 HGLMKKVKTLGYNPNTRFVLQDLDEE 598


>gi|242056803|ref|XP_002457547.1| hypothetical protein SORBIDRAFT_03g009160 [Sorghum bicolor]
 gi|241929522|gb|EES02667.1| hypothetical protein SORBIDRAFT_03g009160 [Sorghum bicolor]
          Length = 762

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 191/571 (33%), Positives = 322/571 (56%), Gaps = 7/571 (1%)

Query: 39  PLIPK---GPSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHN 94
           P++ K   G S++  N L+ +Y  +G I  AR +F EMP RD +++  MI G +    H 
Sbjct: 157 PVVTKLGFGASVVVCNTLLDAYCKQGFIAAARRVFLEMPHRDSITYNAMIMGCSRQGRHG 216

Query: 95  QAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLM 154
           +A  +F  M R  V+ + FT SS+L    GM  L     +HG+ ++     +++V N+L+
Sbjct: 217 EALELFAAMRREGVDTSHFTFSSLLTVATGMVDLHLGRQIHGLFVRANPSCNVFVNNALL 276

Query: 155 DVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP 214
           D Y+ C  S+ + + +F++M  +++VS+  +I+  + +  G   L +F++M   G +   
Sbjct: 277 DFYSKC-DSLGDLKQLFDEMSERDNVSYNVMISACSWNRCGGMALQLFRDMQTLGFDRRT 335

Query: 215 YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE 274
             ++  +    +   +  G+ IHA +I HG      V N+++DMY +   L  A   F  
Sbjct: 336 LPYASLLSVAGALPHIKIGRQIHAQLILHGLTLEDFVGNALIDMYSKCGMLDAAKTIFAY 395

Query: 275 MTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG 333
            ++K  I+W  +I G  ++G +E  L +F  M+    SP+  T +SI+ + ++LA +  G
Sbjct: 396 KSDKTAISWTALITGCVQNGQNEEALQLFCDMRRAGLSPDRATCSSIMKSSSSLAVIGIG 455

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
           +Q+HA + + G   ++   +AL+DMYAKCG + ++ + F+EM +++ +TW +++  Y  +
Sbjct: 456 RQLHAYLTKSGHMPSVFSGSALLDMYAKCGCLDEAIRTFNEMPEKNSITWNAVISAYAQY 515

Query: 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDY-NVNPNKEI 452
           G  K AI +FD M+  G+ PD + F++VL AC H GL +E +KYF  M  Y +++P KE 
Sbjct: 516 GQAKNAIRMFDSMLHCGLCPDPVTFLSVLAACGHNGLAEECMKYFDLMRYYYSMSPWKEH 575

Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLK 512
           Y CV+D LGRAG   +  ++I  MPF+ D  +W  +L +C+ +   +L  +AA ++  + 
Sbjct: 576 YSCVIDTLGRAGCFDKIQKVIDEMPFEDDPIIWSSILHSCRIYGNQDLATVAAEKLFTMV 635

Query: 513 PNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMG 572
           P     Y+ILSNIYA  G WE  A+ +KIMR  G KKE G SW+E++ K+  F +ND   
Sbjct: 636 PTDATAYVILSNIYAKAGNWEGAARVKKIMRDRGVKKESGNSWVEIKQKIYMFSSNDHTN 695

Query: 573 SHTQYVYGVLEMLIRHMNETAYEPDIDCLIH 603
                +   LE L   M++  YEPD  C +H
Sbjct: 696 PMIDEIKKELERLYEEMDKQGYEPDTSCALH 726



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 123/478 (25%), Positives = 235/478 (49%), Gaps = 20/478 (4%)

Query: 74  ERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN-EVNPNAFTLSSVLKACKGMKSLSNAA 132
            R+  +WT+M+    +    + A ++F +M+R  E +P+  T+++VL          +  
Sbjct: 99  RRNAKTWTIMMRMLPADGRGSDAVSLFRDMLREGEASPDDVTITTVLNV-----PGCDVG 153

Query: 133 LVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHS 192
            +H +  K G   S+ V N+L+D Y      +  AR VF +M  ++ +++  +I G +  
Sbjct: 154 TLHPVVTKLGFGASVVVCNTLLDAYCKQGF-IAAARRVFLEMPHRDSITYNAMIMGCSRQ 212

Query: 193 GNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVM 252
           G     L +F  M  EGV+ + ++FS  +        +  G+ IH   ++     N+ V 
Sbjct: 213 GRHGEALELFAAMRREGVDTSHFTFSSLLTVATGMVDLHLGRQIHGLFVRANPSCNVFVN 272

Query: 253 NSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG--YEKSGSSECLNMFSKMKSERF 310
           N++LD Y + D L D  Q FDEM+E+D +++N +I+   + + G    L +F  M++  F
Sbjct: 273 NALLDFYSKCDSLGDLKQLFDEMSERDNVSYNVMISACSWNRCGGMA-LQLFRDMQTLGF 331

Query: 311 SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQK 370
                 + S+++    L  +  G+Q+HA ++  GL     + NALIDMY+KCG +  ++ 
Sbjct: 332 DRRTLPYASLLSVAGALPHIKIGRQIHAQLILHGLTLEDFVGNALIDMYSKCGMLDAAKT 391

Query: 371 IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           IF+  SD+  ++WT+++ G   +G  +EA++LF +M ++G+ PDR    +++ + S   +
Sbjct: 392 IFAYKSDKTAISWTALITGCVQNGQNEEALQLFCDMRRAGLSPDRATCSSIMKSSSSLAV 451

Query: 431 VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490
           +  G +    +      P+      ++D+  + G + EA      MP K +   W  ++ 
Sbjct: 452 IGIGRQLHAYLTKSGHMPSVFSGSALLDMYAKCGCLDEAIRTFNEMPEK-NSITWNAVIS 510

Query: 491 ACKEHRLPNLGKLAALRVLD--LKPNMMGTYIILSNIYAA---EGKWEEFAKFRKIMR 543
           A  ++         A+R+ D  L   +    +   ++ AA    G  EE  K+  +MR
Sbjct: 511 AYAQYGQAK----NAIRMFDSMLHCGLCPDPVTFLSVLAACGHNGLAEECMKYFDLMR 564



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 116/253 (45%), Gaps = 14/253 (5%)

Query: 249 LPVMNSILDMYCRFDC-LSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMK 306
           L  +N IL + C   C LS A   F     ++  TW  ++      G  S+ +++F  M 
Sbjct: 71  LRFLNRIL-LGCSRSCDLSAAKALFSAAARRNAKTWTIMMRMLPADGRGSDAVSLFRDML 129

Query: 307 SE-RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNI 365
            E   SP+  T T+++     +     G  +H  + + G   ++ + N L+D Y K G I
Sbjct: 130 REGEASPDDVTITTVL----NVPGCDVGT-LHPVVTKLGFGASVVVCNTLLDAYCKQGFI 184

Query: 366 SDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTAC 425
           + ++++F EM  RD +T+ +M++G    G   EA+ELF  M + GV      F ++LT  
Sbjct: 185 AAARRVFLEMPHRDSITYNAMIMGCSRQGRHGEALELFAAMRREGVDTSHFTFSSLLTVA 244

Query: 426 SHAGLVDEGLKYFKSMNDYNVNPNKEIY--GCVVDLLGRAGRVKEAYELIKSMPFKPDES 483
           +  G+VD  L           NP+  ++    ++D   +   + +  +L   M  + D  
Sbjct: 245 T--GMVDLHLGRQIHGLFVRANPSCNVFVNNALLDFYSKCDSLGDLKQLFDEMSER-DNV 301

Query: 484 VWGPLLGACKEHR 496
            +  ++ AC  +R
Sbjct: 302 SYNVMISACSWNR 314


>gi|30689384|ref|NP_194969.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75147159|sp|Q84MA3.1|PP345_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g32430, mitochondrial; Flags: Precursor
 gi|30102674|gb|AAP21255.1| At4g32430 [Arabidopsis thaliana]
 gi|110742925|dbj|BAE99358.1| hypothetical protein [Arabidopsis thaliana]
 gi|332660658|gb|AEE86058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 203/577 (35%), Positives = 328/577 (56%), Gaps = 25/577 (4%)

Query: 24  QSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVM 83
           Q   +V K+ ++SD         ++  + I  Y   G    AR +FDEM  +D++SW  +
Sbjct: 195 QLQSTVVKTGLESDL--------VVGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSL 246

Query: 84  IAGYTSFNCHN-QAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG 142
           ++G +       +A  +F +M+R  V  +  + +SV+  C     L  A  +HG+ IK G
Sbjct: 247 LSGLSQEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRG 306

Query: 143 LEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVF 202
            E  + V N LM  Y+ C + ++  + VF+ M  +N VSWTT+I     S N    + +F
Sbjct: 307 YESLLEVGNILMSRYSKCGV-LEAVKSVFHQMSERNVVSWTTMI-----SSNKDDAVSIF 360

Query: 203 KEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRF 262
             M  +GV  N  +F   + A      +  G  IH   IK GF S   V NS + +Y +F
Sbjct: 361 LNMRFDGVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITLYAKF 420

Query: 263 DCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSII 321
           + L DA + F+++T +++I+WN +I+G+ ++G S E L MF    +E   PN +TF S++
Sbjct: 421 EALEDAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMFLSAAAETM-PNEYTFGSVL 479

Query: 322 AACATLAALSC--GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD 379
            A A    +S   GQ+ HA +++ GL+    +++AL+DMYAK GNI +S+K+F+EMS ++
Sbjct: 480 NAIAFAEDISVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNIDESEKVFNEMSQKN 539

Query: 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439
              WTS++  Y +HG  +  + LF +M+K  V PD + F++VLTAC+  G+VD+G + F 
Sbjct: 540 QFVWTSIISAYSSHGDFETVMNLFHKMIKENVAPDLVTFLSVLTACNRKGMVDKGYEIFN 599

Query: 440 SMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLP 498
            M + YN+ P+ E Y C+VD+LGRAGR+KEA EL+  +P  P ES+   +LG+C+ H   
Sbjct: 600 MMIEVYNLEPSHEHYSCMVDMLGRAGRLKEAEELMSEVPGGPGESMLQSMLGSCRLHGNV 659

Query: 499 NLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEV 558
            +G   A   +++KP + G+Y+ + NIYA + +W++ A+ RK MR     KE G SWI+V
Sbjct: 660 KMGAKVAELAMEMKPELSGSYVQMYNIYAEKEEWDKAAEIRKAMRKKNVSKEAGFSWIDV 719

Query: 559 RD-----KVCGFIANDKMGSHTQYVYGVLEMLIRHMN 590
            D      + GF + DK    +  +Y ++E++   MN
Sbjct: 720 GDTEGSLTMQGFSSGDKSHPKSDEIYRMVEIIGLEMN 756



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 114/443 (25%), Positives = 222/443 (50%), Gaps = 13/443 (2%)

Query: 56  YFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTL 115
           Y   G  + A  +F+ + + DVVSW  +++G   F+ +  A    V M    V  +AFT 
Sbjct: 121 YRKAGRFDNALCIFENLVDPDVVSWNTILSG---FDDNQIALNFVVRMKSAGVVFDAFTY 177

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMK 175
           S+ L  C G +       +    +K GLE  + V NS + +Y+    S   AR VF++M 
Sbjct: 178 STALSFCVGSEGFLLGLQLQSTVVKTGLESDLVVGNSFITMYSRSG-SFRGARRVFDEMS 236

Query: 176 WKNDVSWTTLITGYAHSGN-GYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGK 234
           +K+ +SW +L++G +  G  G+  + +F++M+ EGVE++  SF+  +  C     +   +
Sbjct: 237 FKDMISWNSLLSGLSQEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTCCHETDLKLAR 296

Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG 294
            IH   IK G+ S L V N ++  Y +   L      F +M+E+++++W T+I+    S 
Sbjct: 297 QIHGLCIKRGYESLLEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMIS----SN 352

Query: 295 SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
             + +++F  M+ +   PN  TF  +I A      +  G ++H   ++ G     ++ N+
Sbjct: 353 KDDAVSIFLNMRFDGVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNS 412

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
            I +YAK   + D++K F +++ R++++W +M+ G+  +G   EA+++F       + P+
Sbjct: 413 FITLYAKFEALEDAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMFLSAAAETM-PN 471

Query: 415 RIVFMAVLTACSHAG--LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
              F +VL A + A    V +G +    +    +N    +   ++D+  + G + E+ ++
Sbjct: 472 EYTFGSVLNAIAFAEDISVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNIDESEKV 531

Query: 473 IKSMPFKPDESVWGPLLGACKEH 495
              M  + ++ VW  ++ A   H
Sbjct: 532 FNEMS-QKNQFVWTSIISAYSSH 553



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 131/234 (55%), Gaps = 8/234 (3%)

Query: 198 GLGVFKEMLLEGV---EMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNS 254
            L +FKE L  G     M+  +  +A++AC   G +  G  IH      GF S + V N+
Sbjct: 59  ALSIFKENLQLGYFGRHMDEVTLCLALKAC--RGDLKRGCQIHGFSTTSGFTSFVCVSNA 116

Query: 255 ILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNC 314
           ++ MY +     +A   F+ + + D+++WNTI++G++ +  +  LN   +MKS     + 
Sbjct: 117 VMGMYRKAGRFDNALCIFENLVDPDVVSWNTILSGFDDNQIA--LNFVVRMKSAGVVFDA 174

Query: 315 FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSE 374
           FT+++ ++ C        G Q+ + +V+ GL+ +L + N+ I MY++ G+   ++++F E
Sbjct: 175 FTYSTALSFCVGSEGFLLGLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARRVFDE 234

Query: 375 MSDRDLVTWTSMMIGYGAHG-HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH 427
           MS +D+++W S++ G    G  G EA+ +F +M++ GV  D + F +V+T C H
Sbjct: 235 MSFKDMISWNSLLSGLSQEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTCCH 288


>gi|297606175|ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
 gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa Japonica Group]
          Length = 590

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 178/494 (36%), Positives = 303/494 (61%), Gaps = 4/494 (0%)

Query: 117 SVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW 176
           + + AC   ++L     VH   I      ++++   L+ +Y  C  ++D+AR V + M  
Sbjct: 15  AAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCG-ALDDARNVLDRMPE 73

Query: 177 KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLI 236
           ++ VSWTT+I+GY+ +      L +F +ML  G   N Y+ +  + +C+    +  GK +
Sbjct: 74  RSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQV 133

Query: 237 HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-S 295
           H+ ++K  F S++ V +S+LDMY + + + +A + FD + E+D+++   II+GY + G  
Sbjct: 134 HSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLD 193

Query: 296 SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
            E L++F ++ SE    N  TFT+++ A + LA+L  G+QVHA I+R+ L   +AL N+L
Sbjct: 194 EEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSL 253

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           IDMY+KCG +  S+++F  M +R +V+W +M++GYG HG G E I LF ++ K  V+PD 
Sbjct: 254 IDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDS 312

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
           +  +AVL+ CSH GLVDEGL  F ++  + +   +   YGC++DLLGR+GR+++A  LI+
Sbjct: 313 VTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIE 372

Query: 475 SMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEE 534
           +MPF+   S+WG LLGAC+ H   ++G+L A ++L+++P   G Y+ILSNIYAA G W++
Sbjct: 373 NMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKD 432

Query: 535 FAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAY 594
             K RK+M      KE G SWI +   +  F ++++     + +   ++ +   +    +
Sbjct: 433 VFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGF 492

Query: 595 EPDIDCLIHDLEGE 608
            PD+ C++HD++ E
Sbjct: 493 VPDLSCVLHDVDDE 506



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 172/304 (56%), Gaps = 15/304 (4%)

Query: 45  PSI-LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           P++ L T L+  Y   G +++AR + D MPER VVSWT MI+GY+    H +A  +F++M
Sbjct: 43  PAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKM 102

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           +R    PN +TL++VL +C G +S+     VH + +K   E  ++V +SL+D+YA    +
Sbjct: 103 LRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSE-N 161

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +  AR VF+ +  ++ VS T +I+GYA  G     L +F+++  EG++ N  +F+  V A
Sbjct: 162 IQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTA 221

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
            +    + +GK +HA +++      + + NS++DMY +   L  + + FD M E+ +++W
Sbjct: 222 LSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSW 281

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N ++ GY + G   E +++F  +  E   P+  T  ++++ C+           H G+V 
Sbjct: 282 NAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCS-----------HGGLVD 329

Query: 343 RGLD 346
            GLD
Sbjct: 330 EGLD 333



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 130/231 (56%), Gaps = 1/231 (0%)

Query: 205 MLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264
           M L G     + +  A+ AC     +  G+ +HA +I   +   + +   ++ MY R   
Sbjct: 1   MALPGASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGA 60

Query: 265 LSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAA 323
           L DA    D M E+ +++W T+I+GY ++    E L++F KM      PN +T  +++ +
Sbjct: 61  LDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTS 120

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTW 383
           C+   ++  G+QVH+ +V+   + ++ + ++L+DMYAK  NI +++++F  + +RD+V+ 
Sbjct: 121 CSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSC 180

Query: 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434
           T+++ GY   G  +EA++LF ++   G++ + + F  ++TA S    +D G
Sbjct: 181 TAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYG 231



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 84/161 (52%)

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           + + I AC    AL  G+QVHA ++       + L   L+ MY +CG + D++ +   M 
Sbjct: 13  YEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMP 72

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
           +R +V+WT+M+ GY       EA++LF +M+++G  P+      VLT+CS    + +G +
Sbjct: 73  ERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQ 132

Query: 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMP 477
               +   N   +  +   ++D+  ++  ++EA  +  ++P
Sbjct: 133 VHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLP 173


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 182/568 (32%), Positives = 322/568 (56%), Gaps = 5/568 (0%)

Query: 45  PSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           P +  +N L+KSY +   ++ A  LF+E+PE+D V++  +I GY     + ++  +F++M
Sbjct: 182 PFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKM 241

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
            ++   P+ FT S VLKA  G+   +    +H +++  G      V N ++D Y+     
Sbjct: 242 RQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRV 301

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           ++  R++F++M   + VS+  +I+ Y+ +      L  F+EM   G +   + F+  +  
Sbjct: 302 LET-RMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSI 360

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
            A+   +  G+ +H   +     S L V NS++DMY + +   +A   F  + ++  ++W
Sbjct: 361 AANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSW 420

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
             +I+GY + G     L +F+KM+      +  TF +++ A A+ A+L  G+Q+HA I+R
Sbjct: 421 TALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIR 480

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            G   N+   + L+DMYAKCG+I D+ ++F EM DR+ V+W +++  +  +G G+ AI  
Sbjct: 481 SGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGA 540

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLG 461
           F +M++SG++PD +  + VLTACSH G V++G +YF++M+  Y + P K+ Y C++DLLG
Sbjct: 541 FAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLG 600

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDL-KPNMMGTYI 520
           R GR  EA +L+  MPF+PDE +W  +L AC+ H+  +L + AA ++  + K      Y+
Sbjct: 601 RNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYV 660

Query: 521 ILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYG 580
            +SNIYAA G+WE+    +K MR  G KK    SW+EV  K+  F +ND+   +   +  
Sbjct: 661 SMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVR 720

Query: 581 VLEMLIRHMNETAYEPDIDCLIHDLEGE 608
            +  L   +    Y+PD   ++ D++ +
Sbjct: 721 KINELTAEIEREGYKPDTSSVVQDVDEQ 748



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 136/464 (29%), Positives = 239/464 (51%), Gaps = 23/464 (4%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P   ++    +I  +   G +  AR LFD MP+R VV+WT+++  Y   +  ++A+ +F
Sbjct: 74  MPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLF 133

Query: 101 VEMVRNE--VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIY--VENSLMDV 156
            +M R+     P+  T +++L  C      +    VH  A+K G + + +  V N L+  
Sbjct: 134 RQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKS 193

Query: 157 YATCCI-SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPY 215
           Y  C +  +D A ++F ++  K+ V++ TLITGY   G     + +F +M   G + + +
Sbjct: 194 Y--CEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDF 251

Query: 216 SFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM 275
           +FS  ++A       + G+ +HA  +  GF  +  V N ILD Y + D + +    FDEM
Sbjct: 252 TFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEM 311

Query: 276 TEKDLITWNTIIAGYEKSGSSEC-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334
            E D +++N +I+ Y ++   E  L+ F +M+   F    F F ++++  A L++L  G+
Sbjct: 312 PELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGR 371

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY---G 391
           Q+H   +    D  L + N+L+DMYAKC    +++ IF  +  R  V+WT+++ GY   G
Sbjct: 372 QLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKG 431

Query: 392 AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG--LVDEGLKYF--KSMNDYNVN 447
            HG G   ++LF +M  S +R D+  F  VL A +     L+ + L  F  +S N  NV 
Sbjct: 432 LHGAG---LKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVF 488

Query: 448 PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
               +    VD+  + G +K+A ++ + MP +   S W  L+ A
Sbjct: 489 SGSGL----VDMYAKCGSIKDAVQVFEEMPDRNAVS-WNALISA 527



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 125/284 (44%), Gaps = 44/284 (15%)

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
           + + A +IK GF ++    N I++   R   +S A + +DEM  K+ ++ NT+I+G+ K+
Sbjct: 33  RRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKT 92

Query: 294 GS--------------------------------SECLNMFSKM--KSERFSPNCFTFTS 319
           G                                  E   +F +M   S    P+  TFT+
Sbjct: 93  GDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTT 152

Query: 320 IIAACATLAALSCGQQVHAGIVRRGLDGN--LALANALIDMYAKCGNISDSQKIFSEMSD 377
           ++  C      +   QVHA  V+ G D N  L ++N L+  Y +   +  +  +F E+ +
Sbjct: 153 LLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPE 212

Query: 378 RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY 437
           +D VT+ +++ GY   G   E+I LF +M +SG +P    F  VL A    GL D  L  
Sbjct: 213 KDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAV--VGLHDFALG- 269

Query: 438 FKSMNDYNVNP----NKEIYGCVVDLLGRAGRVKEAYELIKSMP 477
            + ++  +V      +  +   ++D   +  RV E   L   MP
Sbjct: 270 -QQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMP 312


>gi|225470674|ref|XP_002269391.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 587

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 204/561 (36%), Positives = 319/561 (56%), Gaps = 15/561 (2%)

Query: 28  SVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGY 87
           +V K+  QSD          ++ +++  Y   G    AR +FDEM E+++VSW+ MI+GY
Sbjct: 28  AVLKTGTQSDV--------FMSNHVLNMYAKCGHTTFARQVFDEMFEKNLVSWSAMISGY 79

Query: 88  TSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSI 147
                   A  ++ +M    + PN +  +SV+ AC  + +++    +H  ++K G E   
Sbjct: 80  DQAGEPQMAIDLYSQMF---LVPNEYVFASVISACASLSAVTLGQKIHSRSLKFGYESIS 136

Query: 148 YVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLL 207
           +V NSL+ +Y  C    D A  VF +    N VS+  LITG+  +     GL  FK M  
Sbjct: 137 FVSNSLISMYMKCNQCSD-ALSVFTNTPEPNCVSYNALITGFVENQQLERGLEFFKLMRQ 195

Query: 208 EGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSD 267
           +G+  + ++F   +  C +T  +  G  +H   +K    S   + N I+ MY   + + +
Sbjct: 196 QGLIPDRFAFMGVLGICTTTENLKRGAELHCQTVKLNLDSTPFIGNVIITMYSELNLIQE 255

Query: 268 ANQYFDEMTEKDLITWNTIIAGYEK-SGSSECLNMFSKMKSE-RFSPNCFTFTSIIAACA 325
           A + F  + EKD+I+WNT+IA        ++ L +F  M  E    P+ FTFTS +AACA
Sbjct: 256 AEKAFRLIEEKDVISWNTLIAACSHCDDHAKGLRVFKHMTEETNVRPDDFTFTSALAACA 315

Query: 326 TLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTS 385
            LA++S G+Q+HA ++R  L  +L + NAL++MYAKCG I  +  IFS+M   +LV+W +
Sbjct: 316 GLASMSHGKQIHAHLMRTRLYQDLGVGNALVNMYAKCGCIGYAYDIFSKMVHHNLVSWNT 375

Query: 386 MMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-Y 444
           ++ G+G HG G+ A+ELF++M  SG+RPD + F+ +LTAC+HAGLVD+G  YF SM + Y
Sbjct: 376 IIAGFGNHGLGERAVELFEQMNASGIRPDSVTFIGLLTACNHAGLVDKGQLYFNSMEETY 435

Query: 445 NVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLA 504
            + P+ E + C++D+LGRAGR+ EA E ++  PF  D  V   LL A + H    +G+  
Sbjct: 436 GIAPDIEHFSCLIDMLGRAGRLNEAEEYMRKFPFWNDPVVLVSLLSASRLHGDVVIGERL 495

Query: 505 ALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCG 564
           A  +L L+P     Y++LSN+YA++G W+  A+ RK ++G G KKE G S IEV   V  
Sbjct: 496 AKWLLKLQPVTTSPYVLLSNLYASDGMWDSVAEARKRLKGSGLKKEPGHSLIEVNGSVEK 555

Query: 565 FIANDKMGSHTQYVYGVLEML 585
           F   D      + + G+L+ L
Sbjct: 556 FTIGDFTHLRIKEIKGILKTL 576



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 154/278 (55%), Gaps = 5/278 (1%)

Query: 216 SFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM 275
           + S  +  C+ T  +  G  +HAAV+K G  S++ + N +L+MY +    + A Q FDEM
Sbjct: 5   TLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEM 64

Query: 276 TEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334
            EK+L++W+ +I+GY+++G  +  ++++S+M      PN + F S+I+ACA+L+A++ GQ
Sbjct: 65  FEKNLVSWSAMISGYDQAGEPQMAIDLYSQM---FLVPNEYVFASVISACASLSAVTLGQ 121

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
           ++H+  ++ G +    ++N+LI MY KC   SD+  +F+   + + V++ +++ G+  + 
Sbjct: 122 KIHSRSLKFGYESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGFVENQ 181

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG 454
             +  +E F  M + G+ PDR  FM VL  C+    +  G +        N++    I  
Sbjct: 182 QLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAELHCQTVKLNLDSTPFIGN 241

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGAC 492
            ++ +      ++EA +  + +  K D   W  L+ AC
Sbjct: 242 VIITMYSELNLIQEAEKAFRLIEEK-DVISWNTLIAAC 278


>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 693

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 187/558 (33%), Positives = 307/558 (55%), Gaps = 38/558 (6%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+ +Y   G++E    +FD+MP RD VS+  +IA + S     +A  V V M  +   P 
Sbjct: 95  LLSAYAKMGMVENLHVVFDQMPYRDSVSYNTLIACFASNGHSGKALKVLVRMQEDGFQPT 154

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
            ++  + L+AC  +  L +   +HG  +   L  + +V N++ D+YA C   +D ARL+F
Sbjct: 155 QYSHVNALQACSQLLDLRHGKQIHGRIVVADLGENTFVRNAMTDMYAKCG-DIDKARLLF 213

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           + M  KN VSW  +I+GY   GN    + +F EM L G++                    
Sbjct: 214 DGMIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLK-------------------- 253

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
                           +L  ++++L+ Y R   + DA   F ++ +KD I W T+I GY 
Sbjct: 254 ---------------PDLVTVSNVLNAYFRCGRVDDARNLFIKLPKKDEICWTTMIVGYA 298

Query: 292 KSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           ++G  E    +F  M      P+ +T +S++++CA LA+L  GQ VH  +V  G+D ++ 
Sbjct: 299 QNGREEDAWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVMGIDNSML 358

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           +++AL+DMY KCG   D++ IF  M  R+++TW +M++GY  +G   EA+ L++ M +  
Sbjct: 359 VSSALVDMYCKCGVTLDARVIFETMPIRNVITWNAMILGYAQNGQVLEALTLYERMQQEN 418

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470
            +PD I F+ VL+AC +A +V EG KYF S++++ + P  + Y C++ LLGR+G V +A 
Sbjct: 419 FKPDNITFVGVLSACINADMVKEGQKYFDSISEHGIAPTLDHYACMITLLGRSGSVDKAV 478

Query: 471 ELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEG 530
           +LI+ MP +P+  +W  LL  C +  L N  +LAA  + +L P   G YI+LSN+YAA G
Sbjct: 479 DLIQGMPHEPNYRIWSTLLSVCAKGDLKN-AELAASHLFELDPRNAGPYIMLSNLYAACG 537

Query: 531 KWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMN 590
           +W++ A  R +M+   +KK    SW+EV +KV  F++ D        +YG L  LI  + 
Sbjct: 538 RWKDVAVVRSLMKEKNAKKFAAYSWVEVGNKVHRFVSEDHYHPEVGKIYGELNRLISILQ 597

Query: 591 ETAYEPDIDCLIHDLEGE 608
           +  Y PD + ++H++  E
Sbjct: 598 QIGYNPDTNIVLHNVGEE 615


>gi|357485423|ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355514334|gb|AES95957.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 676

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 200/566 (35%), Positives = 318/566 (56%), Gaps = 5/566 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S     LI  Y    +I EAR LFDEMP R +V+W  MI+ + S     +A  ++  M+ 
Sbjct: 35  SFFGHKLIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSRGKTKEAIELYDNMLF 94

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSI-YVENSLMDVYATCCISM 164
             V P+A+T S++ KA   M         HG+A+  G E S  +V   ++D+YA     M
Sbjct: 95  EGVLPDAYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEVSDGFVATGIVDMYAKFG-KM 153

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
            +AR VF+ +  K+ V +T LI GY   G     L VF++M+   ++ N Y+ +  + +C
Sbjct: 154 KDARFVFDRVLDKDVVLFTALIVGYNQRGLDGEALEVFEDMVGSRIKPNEYTLASVLVSC 213

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
            + G +  GKLIH  V+K G  S +    S+L MY + + + D+ + F+ +     +TW 
Sbjct: 214 GNLGDLVNGKLIHGLVVKSGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWT 273

Query: 285 TIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           + I G  ++G  E  L+MF +M     SPN FTF+SI+ AC++LA L  G+Q+HA  V+ 
Sbjct: 274 SFIVGLVQNGREEIALSMFREMIRCSISPNHFTFSSILHACSSLAMLEAGEQIHAVTVKL 333

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G+DGN  +  ALI +Y KCGN+  ++ +F  +++ D+V+  +M+  Y  +G G EA+ELF
Sbjct: 334 GVDGNKYVDAALIHLYGKCGNVEKARSVFESLTELDVVSINTMIYAYAQNGFGHEALELF 393

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGR 462
           + M K G +P+ + F+++L AC++AGLV+EG + F  + N++++   ++ Y C++DLLGR
Sbjct: 394 ERMKKLGHKPNVVTFISILLACNNAGLVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLGR 453

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           A R +EA  LI+     PD   W  LL ACK H    + +    ++LD  P   GT+I+L
Sbjct: 454 AKRFEEAAMLIEEGK-NPDVIQWRTLLNACKIHGEVEMAEKFMKKMLDQAPRDGGTHILL 512

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           +NIYA+ GKW+   + +   R +  KK   MSW+++  +V  F+A D        +  +L
Sbjct: 513 TNIYASAGKWDNVIEMKSAGRDLRLKKTPAMSWVDIDREVHTFMAGDLSHPRAHEISEML 572

Query: 583 EMLIRHMNETAYEPDIDCLIHDLEGE 608
             LI  +    Y PD   ++ DLE E
Sbjct: 573 HELIEKVITLGYNPDTKFVLQDLEEE 598


>gi|4049345|emb|CAA22570.1| putative protein [Arabidopsis thaliana]
 gi|7270147|emb|CAB79960.1| putative protein [Arabidopsis thaliana]
          Length = 688

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 203/577 (35%), Positives = 328/577 (56%), Gaps = 25/577 (4%)

Query: 24  QSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVM 83
           Q   +V K+ ++SD         ++  + I  Y   G    AR +FDEM  +D++SW  +
Sbjct: 120 QLQSTVVKTGLESDL--------VVGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSL 171

Query: 84  IAGYTSFNCHN-QAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG 142
           ++G +       +A  +F +M+R  V  +  + +SV+  C     L  A  +HG+ IK G
Sbjct: 172 LSGLSQEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRG 231

Query: 143 LEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVF 202
            E  + V N LM  Y+ C + ++  + VF+ M  +N VSWTT+I     S N    + +F
Sbjct: 232 YESLLEVGNILMSRYSKCGV-LEAVKSVFHQMSERNVVSWTTMI-----SSNKDDAVSIF 285

Query: 203 KEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRF 262
             M  +GV  N  +F   + A      +  G  IH   IK GF S   V NS + +Y +F
Sbjct: 286 LNMRFDGVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITLYAKF 345

Query: 263 DCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSII 321
           + L DA + F+++T +++I+WN +I+G+ ++G S E L MF    +E   PN +TF S++
Sbjct: 346 EALEDAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMFLSAAAETM-PNEYTFGSVL 404

Query: 322 AACATLAALSC--GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD 379
            A A    +S   GQ+ HA +++ GL+    +++AL+DMYAK GNI +S+K+F+EMS ++
Sbjct: 405 NAIAFAEDISVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNIDESEKVFNEMSQKN 464

Query: 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439
              WTS++  Y +HG  +  + LF +M+K  V PD + F++VLTAC+  G+VD+G + F 
Sbjct: 465 QFVWTSIISAYSSHGDFETVMNLFHKMIKENVAPDLVTFLSVLTACNRKGMVDKGYEIFN 524

Query: 440 SMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLP 498
            M + YN+ P+ E Y C+VD+LGRAGR+KEA EL+  +P  P ES+   +LG+C+ H   
Sbjct: 525 MMIEVYNLEPSHEHYSCMVDMLGRAGRLKEAEELMSEVPGGPGESMLQSMLGSCRLHGNV 584

Query: 499 NLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEV 558
            +G   A   +++KP + G+Y+ + NIYA + +W++ A+ RK MR     KE G SWI+V
Sbjct: 585 KMGAKVAELAMEMKPELSGSYVQMYNIYAEKEEWDKAAEIRKAMRKKNVSKEAGFSWIDV 644

Query: 559 RD-----KVCGFIANDKMGSHTQYVYGVLEMLIRHMN 590
            D      + GF + DK    +  +Y ++E++   MN
Sbjct: 645 GDTEGSLTMQGFSSGDKSHPKSDEIYRMVEIIGLEMN 681



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/443 (25%), Positives = 222/443 (50%), Gaps = 13/443 (2%)

Query: 56  YFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTL 115
           Y   G  + A  +F+ + + DVVSW  +++G   F+ +  A    V M    V  +AFT 
Sbjct: 46  YRKAGRFDNALCIFENLVDPDVVSWNTILSG---FDDNQIALNFVVRMKSAGVVFDAFTY 102

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMK 175
           S+ L  C G +       +    +K GLE  + V NS + +Y+    S   AR VF++M 
Sbjct: 103 STALSFCVGSEGFLLGLQLQSTVVKTGLESDLVVGNSFITMYSRSG-SFRGARRVFDEMS 161

Query: 176 WKNDVSWTTLITGYAHSGN-GYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGK 234
           +K+ +SW +L++G +  G  G+  + +F++M+ EGVE++  SF+  +  C     +   +
Sbjct: 162 FKDMISWNSLLSGLSQEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTCCHETDLKLAR 221

Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG 294
            IH   IK G+ S L V N ++  Y +   L      F +M+E+++++W T+I+    S 
Sbjct: 222 QIHGLCIKRGYESLLEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMIS----SN 277

Query: 295 SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
             + +++F  M+ +   PN  TF  +I A      +  G ++H   ++ G     ++ N+
Sbjct: 278 KDDAVSIFLNMRFDGVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNS 337

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
            I +YAK   + D++K F +++ R++++W +M+ G+  +G   EA+++F     +   P+
Sbjct: 338 FITLYAKFEALEDAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMFLS-AAAETMPN 396

Query: 415 RIVFMAVLTACSHAG--LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
              F +VL A + A    V +G +    +    +N    +   ++D+  + G + E+ ++
Sbjct: 397 EYTFGSVLNAIAFAEDISVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNIDESEKV 456

Query: 473 IKSMPFKPDESVWGPLLGACKEH 495
              M  + ++ VW  ++ A   H
Sbjct: 457 FNEMS-QKNQFVWTSIISAYSSH 478



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/325 (29%), Positives = 166/325 (51%), Gaps = 13/325 (4%)

Query: 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFND 173
           TL   LKAC+G   L     +HG +   G    + V N++M +Y       DNA  +F +
Sbjct: 5   TLCLALKACRG--DLKRGCQIHGFSTTSGFTSFVCVSNAVMGMYRKAG-RFDNALCIFEN 61

Query: 174 MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG 233
           +   + VSW T+++G+    +    L     M   GV  + +++S A+  C  +     G
Sbjct: 62  LVDPDVVSWNTILSGF---DDNQIALNFVVRMKSAGVVFDAFTYSTALSFCVGSEGFLLG 118

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
             + + V+K G  S+L V NS + MY R      A + FDEM+ KD+I+WN++++G  + 
Sbjct: 119 LQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGLSQE 178

Query: 294 GS--SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLAL 351
           G+   E + +F  M  E    +  +FTS+I  C     L   +Q+H   ++RG +  L +
Sbjct: 179 GTFGFEAVVIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYESLLEV 238

Query: 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411
            N L+  Y+KCG +   + +F +MS+R++V+WT+M+       +  +A+ +F  M   GV
Sbjct: 239 GNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMI-----SSNKDDAVSIFLNMRFDGV 293

Query: 412 RPDRIVFMAVLTACSHAGLVDEGLK 436
            P+ + F+ ++ A      + EGLK
Sbjct: 294 YPNEVTFVGLINAVKCNEQIKEGLK 318



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 124/217 (57%), Gaps = 5/217 (2%)

Query: 212 MNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQY 271
           M+  +  +A++AC   G +  G  IH      GF S + V N+++ MY +     +A   
Sbjct: 1   MDEVTLCLALKAC--RGDLKRGCQIHGFSTTSGFTSFVCVSNAVMGMYRKAGRFDNALCI 58

Query: 272 FDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALS 331
           F+ + + D+++WNTI++G++ +  +  LN   +MKS     + FT+++ ++ C       
Sbjct: 59  FENLVDPDVVSWNTILSGFDDNQIA--LNFVVRMKSAGVVFDAFTYSTALSFCVGSEGFL 116

Query: 332 CGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG 391
            G Q+ + +V+ GL+ +L + N+ I MY++ G+   ++++F EMS +D+++W S++ G  
Sbjct: 117 LGLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGLS 176

Query: 392 AHG-HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH 427
             G  G EA+ +F +M++ GV  D + F +V+T C H
Sbjct: 177 QEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTCCH 213


>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
          Length = 708

 Score =  355 bits (911), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 185/520 (35%), Positives = 313/520 (60%), Gaps = 9/520 (1%)

Query: 47  ILATNLIKSYFDEGL-IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
            +  +L+  YF  G    E R +FD +  +DV+SWT MI+GY        +  +F +M+ 
Sbjct: 154 FVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLA 213

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             V PNAFTLS+V+KAC  +  L    + HG+ +  G + +  + ++L+D++   C ++D
Sbjct: 214 YGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNC-ALD 272

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAVRAC 224
           +AR +F+++   + + WT++I+    +      L  F  M  + G+  + ++F   + AC
Sbjct: 273 DARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTAC 332

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
            + G +  GK +HA VI  GF  N+ V +S++DMY +   + ++ + FD M  K+ ++W+
Sbjct: 333 GNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWS 392

Query: 285 TIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            ++ GY ++G     + +F KM+      + + F +I+  CA LAA+  G++VH   +R+
Sbjct: 393 ALLGGYCQNGDFKSVIQIFRKMEK----VDLYCFGTILRTCAGLAAVRQGKEVHCQYIRK 448

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G   ++ + +AL+D+YAKCG I  +Q IF +M  R+L+TW SM+ G+  +G G+EA+ +F
Sbjct: 449 GGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIF 508

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGR 462
           ++MVK G++PD I F+ +L ACSH GLVDEG +YF SM  DY +    E Y C+VDLLGR
Sbjct: 509 NQMVKEGIKPDYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGR 568

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AG ++EA  LI++  F+ D S+W  LLGAC       + +  A RV++L+P+   +Y++L
Sbjct: 569 AGLLEEAEILIETSDFRDDSSLWAALLGACTTCTNYEIAERIAKRVMELEPDYHLSYVLL 628

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKV 562
           +N+Y A G+W +  + R++M+  G  K  G SWIE ++ +
Sbjct: 629 ANVYKAVGRWNDALRIRRLMKDRGVNKMPGKSWIETKNNL 668



 Score =  215 bits (547), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 119/391 (30%), Positives = 207/391 (52%), Gaps = 15/391 (3%)

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           E++      +S+L+ C  + + ++   +H   IK GLE   +V NSL+ +Y         
Sbjct: 113 EISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPE 172

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
            R VF+ +  K+ +SWT++I+GY   G     L +F +ML  GVE N ++ S  ++AC+ 
Sbjct: 173 TRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSE 232

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G +  G++ H  V+  GF SN  + ++++DM+ R   L DA Q FDE+ E D I W +I
Sbjct: 233 LGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSI 292

Query: 287 IAGYEKSG-SSECLNMFSKMKSER-FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           I+   ++    E L  F  M+ +    P+ FTF +++ AC  L  L  G++VHA ++  G
Sbjct: 293 ISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTG 352

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
             GN+ + ++L+DMY KCG++ +SQ+IF  M  ++ V+W++++ GY  +G  K  I++F 
Sbjct: 353 FCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFR 412

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEG----LKYFKSMNDYNVNPNKEIYGCVVDLL 460
           +M K     D   F  +L  C+    V +G     +Y +     +V     +   +VDL 
Sbjct: 413 KMEKV----DLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVI----VESALVDLY 464

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
            + G ++ A  +   MP + +   W  ++G 
Sbjct: 465 AKCGCIEYAQTIFDQMPVR-NLITWNSMIGG 494



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 151/303 (49%), Gaps = 4/303 (1%)

Query: 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251
           SG   G L + K +    +   P  ++  ++ C      + G  IHA VIK G   +  V
Sbjct: 96  SGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFV 155

Query: 252 MNSILDMYCRFDC-LSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSER 309
            NS+L +Y +      +  + FD +  KD+I+W ++I+GY + G     L +F KM +  
Sbjct: 156 GNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYG 215

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
             PN FT +++I AC+ L  L  G+  H  ++ RG D N  +A+ALIDM+ +   + D++
Sbjct: 216 VEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDAR 275

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS-GVRPDRIVFMAVLTACSHA 428
           ++F E+ + D + WTS++     +    EA+  F  M +  G+ PD   F  VLTAC + 
Sbjct: 276 QLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNL 335

Query: 429 GLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPL 488
           G + +G +    +       N  +   +VD+ G+ G V E+  +   MP K   S W  L
Sbjct: 336 GRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVS-WSAL 394

Query: 489 LGA 491
           LG 
Sbjct: 395 LGG 397



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 123/227 (54%), Gaps = 8/227 (3%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G  ++ ++L+  Y   G + E++ +FD MP ++ VSW+ ++ GY    C N  +   +++
Sbjct: 355 GNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGY----CQNGDFKSVIQI 410

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CI 162
            R     + +   ++L+ C G+ ++     VH   I++G    + VE++L+D+YA C CI
Sbjct: 411 FRKMEKVDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCI 470

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
             + A+ +F+ M  +N ++W ++I G+A +G G   L +F +M+ EG++ +  SF   + 
Sbjct: 471 --EYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILF 528

Query: 223 ACASTGWVSFGKLIHAAVIK-HGFGSNLPVMNSILDMYCRFDCLSDA 268
           AC+  G V  G+    ++ K +G    +   + ++D+  R   L +A
Sbjct: 529 ACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEA 575



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 103/202 (50%), Gaps = 3/202 (1%)

Query: 292 KSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           KSG  S  L +   +     S     + S++  C  + A + G Q+HA +++ GL+ +  
Sbjct: 95  KSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRF 154

Query: 351 LANALIDMYAKCG-NISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
           + N+L+ +Y K G +  +++K+F  +  +D+++WTSM+ GY   G    ++ELF +M+  
Sbjct: 155 VGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAY 214

Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
           GV P+     AV+ ACS  G +  G  +   +     + N  I   ++D+ GR   + +A
Sbjct: 215 GVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDA 274

Query: 470 YELIKSMPFKPDESVWGPLLGA 491
            +L   +  +PD   W  ++ A
Sbjct: 275 RQLFDEL-LEPDAICWTSIISA 295


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  355 bits (911), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 195/562 (34%), Positives = 311/562 (55%), Gaps = 2/562 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L    I +    G +  A   F E+ E D++ W  +I GYT  N  +    ++++M  ++
Sbjct: 21  LMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQ 80

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V+PN FT   VLKAC G         +HG   K G   +++V+NSL+ +YA     +  A
Sbjct: 81  VHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFG-QISYA 139

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R+VF+ +  +  VSWT++I+GY  +G+    L VFKEM    V+ +  +    + A  + 
Sbjct: 140 RIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNV 199

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  GK IH  V K G      ++ S+  MY +   +  A  +F+ M + +LI WN +I
Sbjct: 200 EDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMI 259

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           +GY  +G   E + +F +M ++    +  T  S + A A + +L   + +   I +    
Sbjct: 260 SGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYR 319

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            +  +   LIDMYAKCG+I  ++ +F  ++D+D+V W+ M++GYG HGHG+EAI L++EM
Sbjct: 320 DDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEM 379

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
            ++GV P+   F+ +LTAC ++GLV EG + F  M D+ + P+ + Y CVVDLLGRAG +
Sbjct: 380 KQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCVVDLLGRAGYL 439

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            +AY+ I SMP KP  SVWG LL ACK HR   LG++AA ++  L P   G Y+ LSN+Y
Sbjct: 440 NQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLY 499

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           A+   W   A  R +M   G  K++G S IE+   +  F   D+    ++ ++  L+ L 
Sbjct: 500 ASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLE 559

Query: 587 RHMNETAYEPDIDCLIHDLEGE 608
           + +    Y P ++ ++HDL  E
Sbjct: 560 KRLKAAGYVPHMESVLHDLNHE 581



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 133/255 (52%), Gaps = 2/255 (0%)

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSG 294
           ++  +I  G      +M   ++    F  ++ A++ F E++E D++ WN II GY +K+ 
Sbjct: 6   VYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNI 65

Query: 295 SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
               + M+  M+  +  PNCFTF  ++ AC   +    G+Q+H    + G   N+ + N+
Sbjct: 66  VDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNS 125

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
           L+ MYAK G IS ++ +F ++ DR +V+WTS++ GY  +G   EA+ +F EM +  V+PD
Sbjct: 126 LVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPD 185

Query: 415 RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
            I  ++V+TA ++   + +G      +    +    +I   +  +  + G V+ A     
Sbjct: 186 WIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFN 245

Query: 475 SMPFKPDESVWGPLL 489
            M  KP+  +W  ++
Sbjct: 246 RME-KPNLILWNAMI 259



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 89/211 (42%), Gaps = 11/211 (5%)

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
           QV+  ++  GL     L    I+     G+++ + K F E+S+ D++ W +++ GY    
Sbjct: 5   QVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKN 64

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG 454
                I ++ +M  S V P+   F+ VL AC    +   G +       Y    N  +  
Sbjct: 65  IVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQN 124

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESV--WGPLLGACKEHRLP--NLGKLAALRVLD 510
            +V +  + G++  A  +   +    D +V  W  ++    ++  P   L     +R  +
Sbjct: 125 SLVSMYAKFGQISYARIVFDKL---HDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCN 181

Query: 511 LKPNMMGTYIILSNIYAAEGKWEEFAKFRKI 541
           +KP+    +I L ++  A    E+  + + I
Sbjct: 182 VKPD----WIALVSVMTAYTNVEDLGQGKSI 208


>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Vitis vinifera]
          Length = 633

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 185/520 (35%), Positives = 313/520 (60%), Gaps = 9/520 (1%)

Query: 47  ILATNLIKSYFDEGL-IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
            +  +L+  YF  G    E R +FD +  +DV+SWT MI+GY        +  +F +M+ 
Sbjct: 95  FVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLA 154

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             V PNAFTLS+V+KAC  +  L    + HG+ +  G + +  + ++L+D++   C ++D
Sbjct: 155 YGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNC-ALD 213

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAVRAC 224
           +AR +F+++   + + WT++I+    +      L  F  M  + G+  + ++F   + AC
Sbjct: 214 DARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTAC 273

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
            + G +  GK +HA VI  GF  N+ V +S++DMY +   + ++ + FD M  K+ ++W+
Sbjct: 274 GNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWS 333

Query: 285 TIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            ++ GY ++G     + +F KM+      + + F +I+  CA LAA+  G++VH   +R+
Sbjct: 334 ALLGGYCQNGDFKSVIQIFRKMEK----VDLYCFGTILRTCAGLAAVRQGKEVHCQYIRK 389

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G   ++ + +AL+D+YAKCG I  +Q IF +M  R+L+TW SM+ G+  +G G+EA+ +F
Sbjct: 390 GGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIF 449

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGR 462
           ++MVK G++PD I F+ +L ACSH GLVDEG +YF SM  DY +    E Y C+VDLLGR
Sbjct: 450 NQMVKEGIKPDYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGR 509

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AG ++EA  LI++  F+ D S+W  LLGAC       + +  A RV++L+P+   +Y++L
Sbjct: 510 AGLLEEAEILIETSDFRDDSSLWAALLGACTTCTNYEIAERIAKRVMELEPDYHLSYVLL 569

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKV 562
           +N+Y A G+W +  + R++M+  G  K  G SWIE ++ +
Sbjct: 570 ANVYKAVGRWNDALRIRRLMKDRGVNKMPGKSWIETKNNL 609



 Score =  214 bits (546), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 119/391 (30%), Positives = 207/391 (52%), Gaps = 15/391 (3%)

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           E++      +S+L+ C  + + ++   +H   IK GLE   +V NSL+ +Y         
Sbjct: 54  EISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPE 113

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
            R VF+ +  K+ +SWT++I+GY   G     L +F +ML  GVE N ++ S  ++AC+ 
Sbjct: 114 TRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSE 173

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G +  G++ H  V+  GF SN  + ++++DM+ R   L DA Q FDE+ E D I W +I
Sbjct: 174 LGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSI 233

Query: 287 IAGYEKSG-SSECLNMFSKMKSER-FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           I+   ++    E L  F  M+ +    P+ FTF +++ AC  L  L  G++VHA ++  G
Sbjct: 234 ISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTG 293

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
             GN+ + ++L+DMY KCG++ +SQ+IF  M  ++ V+W++++ GY  +G  K  I++F 
Sbjct: 294 FCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFR 353

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEG----LKYFKSMNDYNVNPNKEIYGCVVDLL 460
           +M K     D   F  +L  C+    V +G     +Y +     +V     +   +VDL 
Sbjct: 354 KMEKV----DLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVI----VESALVDLY 405

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
            + G ++ A  +   MP + +   W  ++G 
Sbjct: 406 AKCGCIEYAQTIFDQMPVR-NLITWNSMIGG 435



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 151/303 (49%), Gaps = 4/303 (1%)

Query: 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251
           SG   G L + K +    +   P  ++  ++ C      + G  IHA VIK G   +  V
Sbjct: 37  SGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFV 96

Query: 252 MNSILDMYCRFDC-LSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSER 309
            NS+L +Y +      +  + FD +  KD+I+W ++I+GY + G     L +F KM +  
Sbjct: 97  GNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYG 156

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
             PN FT +++I AC+ L  L  G+  H  ++ RG D N  +A+ALIDM+ +   + D++
Sbjct: 157 VEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDAR 216

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS-GVRPDRIVFMAVLTACSHA 428
           ++F E+ + D + WTS++     +    EA+  F  M +  G+ PD   F  VLTAC + 
Sbjct: 217 QLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNL 276

Query: 429 GLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPL 488
           G + +G +    +       N  +   +VD+ G+ G V E+  +   MP K   S W  L
Sbjct: 277 GRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVS-WSAL 335

Query: 489 LGA 491
           LG 
Sbjct: 336 LGG 338



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 159/337 (47%), Gaps = 42/337 (12%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G  ++ ++L+  Y   G + E++ +FD MP ++ VSW+ ++ GY    C N  +   +++
Sbjct: 296 GNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGY----CQNGDFKSVIQI 351

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CI 162
            R     + +   ++L+ C G+ ++     VH   I++G    + VE++L+D+YA C CI
Sbjct: 352 FRKMEKVDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCI 411

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
             + A+ +F+ M  +N ++W ++I G+A +G G   L +F +M+ EG++ +  SF   + 
Sbjct: 412 --EYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILF 469

Query: 223 ACASTGWVSFGKLIHAAVIK-HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
           AC+  G V  G+    ++ K +G    +   + ++D+  R   L +A             
Sbjct: 470 ACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEA------------- 516

Query: 282 TWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
                          E L     +++  F  +   + +++ AC T       +++   ++
Sbjct: 517 ---------------EIL-----IETSDFRDDSSLWAALLGACTTCTNYEIAERIAKRVM 556

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR 378
               D +L+    L ++Y   G  +D+ +I   M DR
Sbjct: 557 ELEPDYHLSYV-LLANVYKAVGRWNDALRIRRLMKDR 592



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 103/202 (50%), Gaps = 3/202 (1%)

Query: 292 KSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           KSG  S  L +   +     S     + S++  C  + A + G Q+HA +++ GL+ +  
Sbjct: 36  KSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRF 95

Query: 351 LANALIDMYAKCG-NISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
           + N+L+ +Y K G +  +++K+F  +  +D+++WTSM+ GY   G    ++ELF +M+  
Sbjct: 96  VGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAY 155

Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
           GV P+     AV+ ACS  G +  G  +   +     + N  I   ++D+ GR   + +A
Sbjct: 156 GVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDA 215

Query: 470 YELIKSMPFKPDESVWGPLLGA 491
            +L   +  +PD   W  ++ A
Sbjct: 216 RQLFDEL-LEPDAICWTSIISA 236


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 195/562 (34%), Positives = 311/562 (55%), Gaps = 2/562 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L    I +    G +  A   F E+ E D++ W  +I GYT  N  +    ++++M  ++
Sbjct: 36  LMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQ 95

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V+PN FT   VLKAC G         +HG   K G   +++V+NSL+ +YA     +  A
Sbjct: 96  VHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFG-QISYA 154

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R+VF+ +  +  VSWT++I+GY  +G+    L VFKEM    V+ +  +    + A  + 
Sbjct: 155 RIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNV 214

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  GK IH  V K G      ++ S+  MY +   +  A  +F+ M + +LI WN +I
Sbjct: 215 EDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMI 274

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           +GY  +G   E + +F +M ++    +  T  S + A A + +L   + +   I +    
Sbjct: 275 SGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYR 334

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            +  +   LIDMYAKCG+I  ++ +F  ++D+D+V W+ M++GYG HGHG+EAI L++EM
Sbjct: 335 DDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEM 394

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
            ++GV P+   F+ +LTAC ++GLV EG + F  M D+ + P+ + Y CVVDLLGRAG +
Sbjct: 395 KQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCVVDLLGRAGYL 454

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            +AY+ I SMP KP  SVWG LL ACK HR   LG++AA ++  L P   G Y+ LSN+Y
Sbjct: 455 NQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLY 514

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           A+   W   A  R +M   G  K++G S IE+   +  F   D+    ++ ++  L+ L 
Sbjct: 515 ASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLE 574

Query: 587 RHMNETAYEPDIDCLIHDLEGE 608
           + +    Y P ++ ++HDL  E
Sbjct: 575 KRLKAAGYVPHMESVLHDLNHE 596



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 133/255 (52%), Gaps = 2/255 (0%)

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSG 294
           ++  +I  G      +M   ++    F  ++ A++ F E++E D++ WN II GY +K+ 
Sbjct: 21  VYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNI 80

Query: 295 SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
               + M+  M+  +  PNCFTF  ++ AC   +    G+Q+H    + G   N+ + N+
Sbjct: 81  VDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNS 140

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
           L+ MYAK G IS ++ +F ++ DR +V+WTS++ GY  +G   EA+ +F EM +  V+PD
Sbjct: 141 LVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPD 200

Query: 415 RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
            I  ++V+TA ++   + +G      +    +    +I   +  +  + G V+ A     
Sbjct: 201 WIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFN 260

Query: 475 SMPFKPDESVWGPLL 489
            M  KP+  +W  ++
Sbjct: 261 RME-KPNLILWNAMI 274



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 89/211 (42%), Gaps = 11/211 (5%)

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
           QV+  ++  GL     L    I+     G+++ + K F E+S+ D++ W +++ GY    
Sbjct: 20  QVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKN 79

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG 454
                I ++ +M  S V P+   F+ VL AC    +   G +       Y    N  +  
Sbjct: 80  IVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQN 139

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESV--WGPLLGACKEHRLP--NLGKLAALRVLD 510
            +V +  + G++  A  +   +    D +V  W  ++    ++  P   L     +R  +
Sbjct: 140 SLVSMYAKFGQISYARIVFDKL---HDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCN 196

Query: 511 LKPNMMGTYIILSNIYAAEGKWEEFAKFRKI 541
           +KP+    +I L ++  A    E+  + + I
Sbjct: 197 VKPD----WIALVSVMTAYTNVEDLGQGKSI 223


>gi|296090287|emb|CBI40106.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 209/577 (36%), Positives = 325/577 (56%), Gaps = 17/577 (2%)

Query: 14  HCHKIPPI-IKQSLQS-VKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDE 71
           HC K   +    SL + V K+  QSD          ++ +++  Y   G    AR +FDE
Sbjct: 12  HCSKTKALRCGLSLHAAVLKTGTQSDV--------FMSNHVLNMYAKCGHTTFARQVFDE 63

Query: 72  MPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNA 131
           M E+++VSW+ MI+GY        A  ++ +M    + PN +  +SV+ AC  + +++  
Sbjct: 64  MFEKNLVSWSAMISGYDQAGEPQMAIDLYSQMF---LVPNEYVFASVISACASLSAVTLG 120

Query: 132 ALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAH 191
             +H  ++K G E   +V NSL+ +Y  C    D A  VF +    N VS+  LITG+  
Sbjct: 121 QKIHSRSLKFGYESISFVSNSLISMYMKCNQCSD-ALSVFTNTPEPNCVSYNALITGFVE 179

Query: 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251
           +     GL  FK M  +G+  + ++F   +  C +T  +  G  +H   +K    S   +
Sbjct: 180 NQQLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAELHCQTVKLNLDSTPFI 239

Query: 252 MNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEK-SGSSECLNMFSKMKSE-R 309
            N I+ MY   + + +A + F  + EKD+I+WNT+IA        ++ L +F  M  E  
Sbjct: 240 GNVIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACSHCDDHAKGLRVFKHMTEETN 299

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
             P+ FTFTS +AACA LA++S G+Q+HA ++R  L  +L + NAL++MYAKCG I  + 
Sbjct: 300 VRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTRLYQDLGVGNALVNMYAKCGCIGYAY 359

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
            IFS+M   +LV+W +++ G+G HG G+ A+ELF++M  SG+RPD + F+ +LTAC+HAG
Sbjct: 360 DIFSKMVHHNLVSWNTIIAGFGNHGLGERAVELFEQMNASGIRPDSVTFIGLLTACNHAG 419

Query: 430 LVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPL 488
           LVD+G  YF SM + Y + P+ E + C++D+LGRAGR+ EA E ++  PF  D  V   L
Sbjct: 420 LVDKGQLYFNSMEETYGIAPDIEHFSCLIDMLGRAGRLNEAEEYMRKFPFWNDPVVLVSL 479

Query: 489 LGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSK 548
           L A + H    +G+  A  +L L+P     Y++LSN+YA++G W+  A+ RK ++G G K
Sbjct: 480 LSASRLHGDVVIGERLAKWLLKLQPVTTSPYVLLSNLYASDGMWDSVAEARKRLKGSGLK 539

Query: 549 KEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           KE G S IEV   V  F   D      + + G+L+ L
Sbjct: 540 KEPGHSLIEVNGSVEKFTIGDFTHLRIKEIKGILKTL 576



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 154/278 (55%), Gaps = 5/278 (1%)

Query: 216 SFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM 275
           + S  +  C+ T  +  G  +HAAV+K G  S++ + N +L+MY +    + A Q FDEM
Sbjct: 5   TLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEM 64

Query: 276 TEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334
            EK+L++W+ +I+GY+++G  +  ++++S+M      PN + F S+I+ACA+L+A++ GQ
Sbjct: 65  FEKNLVSWSAMISGYDQAGEPQMAIDLYSQM---FLVPNEYVFASVISACASLSAVTLGQ 121

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
           ++H+  ++ G +    ++N+LI MY KC   SD+  +F+   + + V++ +++ G+  + 
Sbjct: 122 KIHSRSLKFGYESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGFVENQ 181

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG 454
             +  +E F  M + G+ PDR  FM VL  C+    +  G +        N++    I  
Sbjct: 182 QLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAELHCQTVKLNLDSTPFIGN 241

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGAC 492
            ++ +      ++EA +  + +  K D   W  L+ AC
Sbjct: 242 VIITMYSELNLIQEAEKAFRLIEEK-DVISWNTLIAAC 278


>gi|115456537|ref|NP_001051869.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|41469627|gb|AAS07350.1| putative pentatricopeptide repeat domain contianing protein [Oryza
           sativa Japonica Group]
 gi|113550340|dbj|BAF13783.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|215686748|dbj|BAG89598.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 702

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 187/552 (33%), Positives = 314/552 (56%), Gaps = 12/552 (2%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G + + + LI+ Y   G +  A+ +FD M   DVV +T +I+ +        A    ++M
Sbjct: 147 GDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQM 206

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKE-GLEG-SIYVENSLMDVYATCC 161
           ++  + PN  T++++L AC  +        +HG  IK+ GL   S+Y   +L+D Y+   
Sbjct: 207 LKQGLKPNEHTMTTILTACPRVLGQQ----IHGYLIKKIGLRSQSVYSSTALIDFYSRNG 262

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
                A+ VF+ +  KN VSW +++  Y   G     L VF +M+ EGV+ N ++ SI +
Sbjct: 263 -EFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVL 321

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
            AC S G    G+ +H + IKH   +++ V N++L MY R   + +     +++   DL+
Sbjct: 322 GACGSIG---LGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLV 378

Query: 282 TWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           +W T I+   ++G  E  + +  +M SE F+PN + F+S++++CA +A+L  G Q H   
Sbjct: 379 SWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLA 438

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           ++ G D  +   NALI+MY+KCG +  ++  F  M   D+ +W S++ G+  HG   +A+
Sbjct: 439 LKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKAL 498

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDL 459
           E+F +M  +G++PD   F+ VL  C+H+G+V+EG  +F+ M D Y+  P    Y C++D+
Sbjct: 499 EVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDM 558

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
           LGR GR  EA  +I  MPF+PD  +W  LL +CK HR  ++GKLAA R+++L      +Y
Sbjct: 559 LGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSASY 618

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVY 579
           +++SNIYA  G+WE+  K R+ M   G KK+ G SWIE+ ++V  F + D    ++  +Y
Sbjct: 619 VLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIEINNEVHTFASRDMSHPNSDSIY 678

Query: 580 GVLEMLIRHMNE 591
            +L  L+  M +
Sbjct: 679 QMLGELVAVMQD 690



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 126/496 (25%), Positives = 239/496 (48%), Gaps = 49/496 (9%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +L    +      G + +A  LFD MP ++VV+WT +++GYT       A  +F +MV +
Sbjct: 49  VLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVES 108

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V PN F  ++ L AC  + +L     VH +A++ G  G  ++ + L+++Y+ C  S+  
Sbjct: 109 GVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCG-SLPA 167

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A+ VF+ M   + V +T+LI+ +  +G          +ML +G++ N ++ +  + AC  
Sbjct: 168 AKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPR 227

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNS--ILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
                 G+ IH  +IK     +  V +S  ++D Y R      A   FD +  K++++W 
Sbjct: 228 V----LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWC 283

Query: 285 TIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           +++  Y + G   E L +F  M SE   PN F  + ++ AC ++     G+Q+H   ++ 
Sbjct: 284 SMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGL---GRQLHCSAIKH 340

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
            L  ++ ++NAL+ MY + G + + + + +++ + DLV+WT+ +     +G G++AI L 
Sbjct: 341 DLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALL 400

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY-------------------------- 437
            +M   G  P+   F +VL++C+    +D+G+++                          
Sbjct: 401 CQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKC 460

Query: 438 ---------FKSMNDYNVNP-NKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGP 487
                    F  M+ ++V   N  I+G      G A +  E +  ++S   KPD+S +  
Sbjct: 461 GQMGSARLAFDVMHTHDVTSWNSLIHGHAQH--GDANKALEVFSKMRSNGIKPDDSTFLG 518

Query: 488 LLGACKEHRLPNLGKL 503
           +L  C    +   G+L
Sbjct: 519 VLMGCNHSGMVEEGEL 534



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 81/170 (47%), Gaps = 3/170 (1%)

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           ++   K G ++D+  +F  M  +++V WTS+M GY  +G  + A+ +F +MV+SGV P+ 
Sbjct: 55  LNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPND 114

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKS 475
               A L AC+  G +  G +            +  I  C++++  R G +  A E+   
Sbjct: 115 FACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDR 174

Query: 476 MPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD--LKPNMMGTYIILS 523
           M   PD   +  L+ A   +    L   A +++L   LKPN      IL+
Sbjct: 175 MD-SPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILT 223


>gi|358343602|ref|XP_003635889.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|358344096|ref|XP_003636129.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355501824|gb|AES83027.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355502064|gb|AES83267.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 662

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 198/566 (34%), Positives = 318/566 (56%), Gaps = 5/566 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S     LI  Y    +I EAR LFDEMP R +V+W  MI+ + S     +A  ++  M+ 
Sbjct: 35  SFFGHKLIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSRGKTKEAIELYSNMLF 94

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSI-YVENSLMDVYATCCISM 164
             V P+A+T S++ KA   M         HG+A+  G E S  +V   ++D+YA     M
Sbjct: 95  EGVLPDAYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEVSDGFVATGIVDMYAKFG-KM 153

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
            +AR VF+ +  K+ V +T LI GY   G     L VF++M+   ++ N Y+ +  + +C
Sbjct: 154 KDARFVFDRVLDKDVVLFTALIVGYNQHGLDGEALEVFEDMVGSRIKPNEYTLASVLVSC 213

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
            + G +  GKLIH  V+K+G  S +    S+L MY + + + D+ + F+ +     +TW 
Sbjct: 214 GNLGDLVNGKLIHGLVVKYGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWT 273

Query: 285 TIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           + I G  ++G  E  L+MF +M     SPN FT +SI+ AC++LA L  G+Q+HA  V+ 
Sbjct: 274 SFIVGLVQNGREEVALSMFREMMRCSISPNHFTLSSILHACSSLAMLEAGEQIHAVTVKL 333

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G+DGN  +  ALI +Y KCGN+  ++ +F  +++ D+V+  +M+  Y  +G G EA+ELF
Sbjct: 334 GVDGNKFVDAALIHLYGKCGNVEKARSVFDSLTELDIVSINTMIYAYAQNGFGHEALELF 393

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGR 462
           + + K G+ P+ + F+++L AC++AGLV+EG + F  + N++++   ++ Y C++DLLGR
Sbjct: 394 ERLKKLGLEPNVVTFISILLACNNAGLVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLGR 453

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           A R +EA  LI+     PD   W  LL ACK H    + +    ++LD  P   GT+I+L
Sbjct: 454 AKRFEEATMLIEEGK-NPDVIQWRTLLNACKIHGEVEMAEKFMKKMLDQAPRDGGTHILL 512

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           +NIYA+ GKW+   + +   R +  KK   MSW+++  +V  F+A D        +  +L
Sbjct: 513 TNIYASAGKWDNVIEMKSAGRDLRLKKTPAMSWVDIDREVHTFMAGDLSHPRAHEISEML 572

Query: 583 EMLIRHMNETAYEPDIDCLIHDLEGE 608
             LI  +    Y PD   ++ DLE E
Sbjct: 573 HELIEKVITLGYNPDTKFVLQDLEEE 598



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 105/210 (50%), Gaps = 17/210 (8%)

Query: 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIF 372
           NC+T  S+IA C    +L+  + +H  I++ G   +    + LID Y KC  I++++K+F
Sbjct: 2   NCYT--SLIAQCTNKKSLTTLKSLHTHILKSGSLFSF-FGHKLIDGYIKCSVITEARKLF 58

Query: 373 SEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD 432
            EM +R +VTW SM+  + + G  KEAIEL+  M+  GV PD   F A+  A S  G+  
Sbjct: 59  DEMPNRHIVTWNSMISSHVSRGKTKEAIELYSNMLFEGVLPDAYTFSAIFKAFSEMGVSR 118

Query: 433 EGLKY--FKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490
           EG K      +  + V+      G +VD+  + G++K+A   +       D  ++  L+ 
Sbjct: 119 EGQKAHGLAVVLGFEVSDGFVATG-IVDMYAKFGKMKDA-RFVFDRVLDKDVVLFTALIV 176

Query: 491 ACKEHRLPNLGKLAALRVLD------LKPN 514
              +H L       AL V +      +KPN
Sbjct: 177 GYNQHGLDG----EALEVFEDMVGSRIKPN 202



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 22/156 (14%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   +   LI  Y   G +E+AR++FD + E D+VS   MI  Y      ++A  +F  +
Sbjct: 337 GNKFVDAALIHLYGKCGNVEKARSVFDSLTELDIVSINTMIYAYAQNGFGHEALELFERL 396

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENS----LMDVYAT 159
            +  + PN  T  S+L AC      +NA LV     +EG +    + N+    L   + T
Sbjct: 397 KKLGLEPNVVTFISILLAC------NNAGLV-----EEGCQIFSLIRNNHSIELTRDHYT 445

Query: 160 CCISM-------DNARLVFNDMKWKNDVSWTTLITG 188
           C I +       + A ++  + K  + + W TL+  
Sbjct: 446 CMIDLLGRAKRFEEATMLIEEGKNPDVIQWRTLLNA 481


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 194/568 (34%), Positives = 324/568 (57%), Gaps = 6/568 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +L+ +LI  Y   G +  A  +FD M +R+VVSWT ++ G+       ++  +F +M  +
Sbjct: 8   MLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMGLS 67

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V PN FT S+ LKAC  +  L     +H + +K G +    V NS++D+Y+ C   ++ 
Sbjct: 68  GVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCG-RINE 126

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  +F  M  +N +SW  +I GY  +G     L +F++M   G  ++ ++F+  ++AC+ 
Sbjct: 127 AACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSD 186

Query: 227 TGWVSFGKLIHAAVIKHGF--GSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
            G +  G  IHA +I  GF    N  V  +++D+Y +   L  A + F  + EK +I+W 
Sbjct: 187 LGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWT 246

Query: 285 TIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +I GY + G+ +E + +F +++      + F  +S++   A  A +  G+Q+HA  ++ 
Sbjct: 247 ALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKV 306

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
               ++++ N+++DMY KCG I++++++FSEM  R++++WT M+ GYG HG GKEAI LF
Sbjct: 307 PSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLF 366

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYN-VNPNKEIYGCVVDLLGR 462
           DEM      PD + ++AVL  CSH+GLV++G +YF  +  Y+ +    E Y C+VDLLGR
Sbjct: 367 DEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDLLGR 426

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AGR+KEA  L+ SMP + +  +W  LL AC+ H    LGK     +L L       Y+++
Sbjct: 427 AGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGDLELGKEVGGILLRLDSENPVNYVMM 486

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           SNIYA  G W+E  + R++++    KKE G SW+E+  +V  F   D     T+ ++ +L
Sbjct: 487 SNIYADAGYWKECERIRELVKSKKLKKEAGRSWVEIDKEVHFFYGGDDTHPLTEKIHEIL 546

Query: 583 EMLIRHMNET-AYEPDIDCLIHDLEGET 609
           + + R M E   Y   +   +HD+E E+
Sbjct: 547 KEMERRMKEELGYVYGVKYALHDVEEES 574



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 185/362 (51%), Gaps = 9/362 (2%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           +++  ++I  Y   G I EA  +F+ MP R+++SW  MIAGYT      +A  +F +M  
Sbjct: 108 NVVGNSIIDMYSKCGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQE 167

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSI--YVENSLMDVYATCCIS 163
                + FT +S LKAC  + ++     +H   I  G   S+   V  +L+D+Y  C   
Sbjct: 168 VGGFLDEFTFTSTLKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCG-K 226

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +  AR VF+ ++ K+ +SWT LI GYA  GN    + +F+++    ++++ +  S  +  
Sbjct: 227 LFMARRVFSHIEEKHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGV 286

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
            A    V  GK +HA  IK   G ++ V NSILDMY +   +++A + F EM  +++I+W
Sbjct: 287 FADFALVQQGKQMHAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISW 346

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
             +I GY K G   E + +F +M+ +   P+  T+ +++  C+    +  GQ+  + +  
Sbjct: 347 TVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCS 406

Query: 343 -RGLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGH---GK 397
             G+   +     ++D+  + G + +++ +   M  + ++  W +++     HG    GK
Sbjct: 407 YHGIKARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGDLELGK 466

Query: 398 EA 399
           E 
Sbjct: 467 EV 468



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 138/258 (53%), Gaps = 3/258 (1%)

Query: 244 GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMF 302
           GFG +L + N ++ MY +   L  A   FD M ++++++W  ++ G+ ++G+  E L +F
Sbjct: 2   GFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLF 61

Query: 303 SKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362
           SKM      PN FTF++ + AC  L  L  G+Q+H   V+ G D    + N++IDMY+KC
Sbjct: 62  SKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKC 121

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
           G I+++  +F  M  R+L++W +M+ GY   G  ++A+ LF +M + G   D   F + L
Sbjct: 122 GRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTL 181

Query: 423 TACSHAGLVDEG--LKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKP 480
            ACS  G + EG  +  F     +  + N  + G ++DL  + G++  A  +   +  K 
Sbjct: 182 KACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKH 241

Query: 481 DESVWGPLLGACKEHRLP 498
             S    +LG  +E  L 
Sbjct: 242 VISWTALILGYAQEGNLA 259


>gi|359493563|ref|XP_002269754.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71420-like [Vitis vinifera]
          Length = 741

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 192/566 (33%), Positives = 316/566 (55%), Gaps = 10/566 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            L  +++  Y   G ++ A  +FDEMPE+++VSWT +++GY      N+ + VF  M+  
Sbjct: 101 FLTNHVVNMYAKCGSLDYAHQMFDEMPEKNIVSWTALVSGYAQHGRSNECFRVFRGMLIW 160

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
              P  F  +SV+ AC G  +      VH +A+K   +  +YV N+L+ +Y   C   D 
Sbjct: 161 H-QPTEFAFASVISACGGDDNCGRQ--VHALALKTSFDSCVYVGNALIMMYCKSCGGADE 217

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSF-SIAVRACA 225
           A  V+  M ++N VSW ++I G+   G G   L +F +M + G+  +  +  SI    C 
Sbjct: 218 AWNVYEAMGFRNLVSWNSMIAGFQVCGCGNRALELFSQMHVGGIRFDRATLVSIFSCLCG 277

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC-LSDANQYFDEMT-EKDLITW 283
               +     +    IK GF   + V  +++  Y      +SD  + F E+   +D+++W
Sbjct: 278 MGDGLECCFQLQCLTIKTGFILKIEVATALVKAYSSLGGEVSDCYRIFLELDGRQDVVSW 337

Query: 284 NTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
             IIA + +    + L +F +   E  +P+   F+ ++ ACA LA       V + +++ 
Sbjct: 338 TGIIAAFAERDPKKALVIFRQFLRECLAPDRHMFSIVLKACAGLATERHALTVQSHVLKV 397

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G + ++ LANALI   A+CG+++ S+++F +M  RD V+W SM+  Y  HG GKEA+ LF
Sbjct: 398 GFEDDIVLANALIHACARCGSVALSKQVFDKMGSRDTVSWNSMLKAYAMHGQGKEALLLF 457

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGR 462
            +M     +PD   F+A+L+ACSHAG+ +EG K F++M N++ + P  + Y C+VD+LGR
Sbjct: 458 SQM---DAQPDGATFVALLSACSHAGMAEEGAKIFETMSNNHGIVPQLDHYACMVDILGR 514

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AG++ EA ELI  MP +PD  VW  LLG+C++H    L KLAA+++ +L PN    Y+++
Sbjct: 515 AGQISEAKELIDKMPMEPDSVVWSALLGSCRKHGETKLAKLAAVKLKELDPNNSLGYVLM 574

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           SNI+  +G++ E    R+ M G   +KE G+SWIEV ++V  F +  +     + +   L
Sbjct: 575 SNIFCTDGRFNEARLIRREMEGKIVRKEPGLSWIEVGNQVHEFASGGQQHPEKEAICARL 634

Query: 583 EMLIRHMNETAYEPDIDCLIHDLEGE 608
           E L+R + +  Y P I   +HD+E E
Sbjct: 635 EELVRRLKDLGYVPQISLALHDIEDE 660



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 145/289 (50%), Gaps = 15/289 (5%)

Query: 215 YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGS--NLPVMNSILDMYCRFDCLSDANQYF 272
           ++++   +ACA    +  G+ +H  +  H   S  NL + N +++MY +   L  A+Q F
Sbjct: 64  HTYAALFQACARRSSLPEGQALHRHMFLHNPNSDFNLFLTNHVVNMYAKCGSLDYAHQMF 123

Query: 273 DEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALS 331
           DEM EK++++W  +++GY + G S+EC  +F  M      P  F F S+I+AC      +
Sbjct: 124 DEMPEKNIVSWTALVSGYAQHGRSNECFRVFRGMLIWH-QPTEFAFASVISACG--GDDN 180

Query: 332 CGQQVHAGIVRRGLDGNLALANALIDMYAK-CGNISDSQKIFSEMSDRDLVTWTSMMIGY 390
           CG+QVHA  ++   D  + + NALI MY K CG   ++  ++  M  R+LV+W SM+ G+
Sbjct: 181 CGRQVHALALKTSFDSCVYVGNALIMMYCKSCGGADEAWNVYEAMGFRNLVSWNSMIAGF 240

Query: 391 GAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK 450
              G G  A+ELF +M   G+R DR   +++ +     G   +GL+    +    +    
Sbjct: 241 QVCGCGNRALELFSQMHVGGIRFDRATLVSIFSCLCGMG---DGLECCFQLQCLTIKTGF 297

Query: 451 EIYGCVVDLLGRA-----GRVKEAYELIKSMPFKPDESVWGPLLGACKE 494
            +   V   L +A     G V + Y +   +  + D   W  ++ A  E
Sbjct: 298 ILKIEVATALVKAYSSLGGEVSDCYRIFLELDGRQDVVSWTGIIAAFAE 346


>gi|224125246|ref|XP_002319538.1| predicted protein [Populus trichocarpa]
 gi|222857914|gb|EEE95461.1| predicted protein [Populus trichocarpa]
          Length = 577

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 192/545 (35%), Positives = 302/545 (55%), Gaps = 4/545 (0%)

Query: 56  YFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR-NEVNPNAFT 114
           Y   G++ +A  LFDEMP RD VSW +MI+G+      +  +  F +M        +  T
Sbjct: 2   YAKNGVLTDAAKLFDEMPMRDTVSWNIMISGFLKDGSFDVGFGFFKQMQSLGFYRLDQAT 61

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM 174
           L+++L AC   +      +VH +A+  G +  I V N+L+  Y  C  S    + VF++M
Sbjct: 62  LTTILSACDRPELGFVNKMVHCLAVLNGFQREISVGNALITSYFKCGFSSSGMQ-VFDEM 120

Query: 175 KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGK 234
             +N ++WT +I+G   S      L +F EM    VE N  ++  ++ AC+    +  G 
Sbjct: 121 LERNVITWTAIISGLVQSELYRDSLRLFVEMTNGLVEPNSLTYLSSLMACSGLQALREGC 180

Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG 294
            IH  V K G  S+  V ++++DMY +   + D  Q F+   + D ++   I+AG+ ++G
Sbjct: 181 QIHGRVWKLGLQSDFCVESALMDMYSKCGSMGDTLQIFESAGQLDKVSMTIILAGFAQNG 240

Query: 295 -SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353
              E +  F KM       +    ++++       +L  GQQ+H+ +++R    N  + N
Sbjct: 241 FEEEAMQFFVKMLEAGTEIDSNMVSAVLGVFGADTSLGLGQQIHSLVIKRSFGSNPFVGN 300

Query: 354 ALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP 413
            LI+MY+KCG++ DS K+FS M   + V+W SM+  +  HG G  A++L+ EM   GV P
Sbjct: 301 GLINMYSKCGDLEDSTKVFSRMPCMNSVSWNSMIAAFARHGDGSRALQLYKEMRLKGVEP 360

Query: 414 DRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
             + F+++L ACSH GLV++G+++ KSM + + + P  E Y CVVD+LGRAG + EA   
Sbjct: 361 TDVTFLSLLHACSHVGLVEKGMEFLKSMTEVHKLTPRMEHYACVVDMLGRAGLLNEAKTF 420

Query: 473 IKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKW 532
           I+ +P KPD  VW  LLGAC  H  P +GK AA  ++   P     YI+L+NIY+++G+W
Sbjct: 421 IEGLPIKPDVLVWQALLGACGIHGDPEMGKYAAEHLILSAPEKPSPYILLANIYSSKGRW 480

Query: 533 EEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNET 592
           +E AK  K M+ M   KE G+SWIE+ + +  F+  DKM    + +YGVL  L  HM + 
Sbjct: 481 KERAKTIKRMKEMCVAKETGISWIEIENNLHSFVVEDKMHPQAEIIYGVLAELFGHMIDE 540

Query: 593 AYEPD 597
            Y PD
Sbjct: 541 GYVPD 545



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/367 (28%), Positives = 183/367 (49%), Gaps = 29/367 (7%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI SYF  G       +FDEM ER+V++WT +I+G      +  +  +FVEM    V PN
Sbjct: 100 LITSYFKCGFSSSGMQVFDEMLERNVITWTAIISGLVQSELYRDSLRLFVEMTNGLVEPN 159

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
           + T  S L AC G+++L     +HG   K GL+    VE++LMD+Y+ C  SM +   +F
Sbjct: 160 SLTYLSSLMACSGLQALREGCQIHGRVWKLGLQSDFCVESALMDMYSKCG-SMGDTLQIF 218

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
                 + VS T ++ G+A +G     +  F +ML  G E++    S  +    +   + 
Sbjct: 219 ESAGQLDKVSMTIILAGFAQNGFEEEAMQFFVKMLEAGTEIDSNMVSAVLGVFGADTSLG 278

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            G+ IH+ VIK  FGSN  V N +++MY +   L D+ + F  M   + ++WN++IA + 
Sbjct: 279 LGQQIHSLVIKRSFGSNPFVGNGLINMYSKCGDLEDSTKVFSRMPCMNSVSWNSMIAAFA 338

Query: 292 KSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           + G  S  L ++ +M+ +   P   TF S++ AC+           H G+V +G++   +
Sbjct: 339 RHGDGSRALQLYKEMRLKGVEPTDVTFLSLLHACS-----------HVGLVEKGMEFLKS 387

Query: 351 LANA------------LIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHGH-- 395
           +               ++DM  + G +++++     +  + D++ W +++   G HG   
Sbjct: 388 MTEVHKLTPRMEHYACVVDMLGRAGLLNEAKTFIEGLPIKPDVLVWQALLGACGIHGDPE 447

Query: 396 -GKEAIE 401
            GK A E
Sbjct: 448 MGKYAAE 454



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 115/220 (52%), Gaps = 2/220 (0%)

Query: 258 MYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSEC-LNMFSKMKSERF-SPNCF 315
           MY +   L+DA + FDEM  +D ++WN +I+G+ K GS +     F +M+S  F   +  
Sbjct: 1   MYAKNGVLTDAAKLFDEMPMRDTVSWNIMISGFLKDGSFDVGFGFFKQMQSLGFYRLDQA 60

Query: 316 TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEM 375
           T T+I++AC         + VH   V  G    +++ NALI  Y KCG  S   ++F EM
Sbjct: 61  TLTTILSACDRPELGFVNKMVHCLAVLNGFQREISVGNALITSYFKCGFSSSGMQVFDEM 120

Query: 376 SDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGL 435
            +R+++TWT+++ G       ++++ LF EM    V P+ + +++ L ACS    + EG 
Sbjct: 121 LERNVITWTAIISGLVQSELYRDSLRLFVEMTNGLVEPNSLTYLSSLMACSGLQALREGC 180

Query: 436 KYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKS 475
           +    +    +  +  +   ++D+  + G + +  ++ +S
Sbjct: 181 QIHGRVWKLGLQSDFCVESALMDMYSKCGSMGDTLQIFES 220



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 16/125 (12%)

Query: 22  IKQSLQS-VKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSW 80
           + Q + S V K S  S+P         +   LI  Y   G +E++  +F  MP  + VSW
Sbjct: 279 LGQQIHSLVIKRSFGSNP--------FVGNGLINMYSKCGDLEDSTKVFSRMPCMNSVSW 330

Query: 81  TVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKAC-------KGMKSLSNAAL 133
             MIA +      ++A  ++ EM    V P   T  S+L AC       KGM+ L +   
Sbjct: 331 NSMIAAFARHGDGSRALQLYKEMRLKGVEPTDVTFLSLLHACSHVGLVEKGMEFLKSMTE 390

Query: 134 VHGMA 138
           VH + 
Sbjct: 391 VHKLT 395


>gi|224090799|ref|XP_002309086.1| predicted protein [Populus trichocarpa]
 gi|222855062|gb|EEE92609.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 189/532 (35%), Positives = 306/532 (57%), Gaps = 11/532 (2%)

Query: 75  RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALV 134
           R+V ++  +I+G+            + EM +  V P+ +T   ++K    +  +     +
Sbjct: 23  RNVFAYNALISGFVLNGLPQDGLGAYEEMRQAGVLPDKYTFPCLIKGLCEVMEVFQVKKI 82

Query: 135 HGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGN 194
           HG+  K GL+  +YV +SL+  Y    + M  AR +F+++  ++ V W +++ GYA  G 
Sbjct: 83  HGLVRKLGLDLDMYVGSSLVSSYLKSEL-MKEARELFDEIPDRDVVLWNSMVNGYAQIGR 141

Query: 195 GYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNS 254
               LGV +EM  EGV M+ ++ S  +   A  G    G+L+H  +IK GF S + V N+
Sbjct: 142 FDEALGVCREMSQEGVLMSKFTVSGVLSVFAGRGDFDNGRLVHGFMIKMGFDSCVSVCNA 201

Query: 255 ILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEK-SGSSECLNMFSKMKSERFSPN 313
           ++DMY +  C+ DA + F+ M EKD+ +WN+I++  E  S     L +F +M  +    +
Sbjct: 202 LIDMYGKCRCVVDALEIFETMNEKDIFSWNSILSANELCSDHDGTLRLFDRMLGDGVQLD 261

Query: 314 CFTFTSIIAACATLAALSCGQQVHAGIVRRGL--DG------NLALANALIDMYAKCGNI 365
             T T+I+ AC+ LAAL  G+++H  ++  G   DG      NL   NAL+DMYAKCG++
Sbjct: 262 LVTITTILPACSHLAALVHGREIHGYMIVNGFVKDGESENMYNLQTINALMDMYAKCGSM 321

Query: 366 SDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTAC 425
            D+  +F  MS+RD  +W  M++GYG HG+G EA+ +F +M KSG++P+ I F+ VL AC
Sbjct: 322 RDAGMVFYNMSNRDTASWNIMIMGYGMHGYGNEALYMFSDMCKSGLKPNEITFVGVLLAC 381

Query: 426 SHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESV 484
           SHAG + +G+K+   M   + V P  + Y CV+D+LGRAG+++EAY+L  +MP + +  V
Sbjct: 382 SHAGFISQGIKFLGEMELKHGVVPTIQHYTCVIDMLGRAGQLEEAYKLAVTMPIQTNPVV 441

Query: 485 WGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544
           W  LL AC+ +   +L ++AA +V +L P   G Y+++SN Y A G+++E    R  MR 
Sbjct: 442 WRALLAACQLYGNVDLAEVAAQKVFELNPAHCGNYVLMSNAYVAAGRYQEVLDIRHTMRQ 501

Query: 545 MGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEP 596
              KK  G SWIE+++ +  FI  D+     + +Y  L +L  H+ E  Y P
Sbjct: 502 QDVKKTPGCSWIELKNGMNTFINGDRNHPEARLIYPELHLLAAHIREHGYVP 553



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 108/359 (30%), Positives = 181/359 (50%), Gaps = 12/359 (3%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + ++L+ SY    L++EAR LFDE+P+RDVV W  M+ GY      ++A  V  EM +  
Sbjct: 97  VGSSLVSSYLKSELMKEARELFDEIPDRDVVLWNSMVNGYAQIGRFDEALGVCREMSQEG 156

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V  + FT+S VL    G     N  LVHG  IK G +  + V N+L+D+Y  C   +D A
Sbjct: 157 VLMSKFTVSGVLSVFAGRGDFDNGRLVHGFMIKMGFDSCVSVCNALIDMYGKCRCVVD-A 215

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             +F  M  K+  SW ++++      +  G L +F  ML +GV+++  + +  + AC+  
Sbjct: 216 LEIFETMNEKDIFSWNSILSANELCSDHDGTLRLFDRMLGDGVQLDLVTITTILPACSHL 275

Query: 228 GWVSFGKLIHAAVIKHGFGS--------NLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
             +  G+ IH  +I +GF          NL  +N+++DMY +   + DA   F  M+ +D
Sbjct: 276 AALVHGREIHGYMIVNGFVKDGESENMYNLQTINALMDMYAKCGSMRDAGMVFYNMSNRD 335

Query: 280 LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
             +WN +I GY   G  +E L MFS M      PN  TF  ++ AC+    +S G +   
Sbjct: 336 TASWNIMIMGYGMHGYGNEALYMFSDMCKSGLKPNEITFVGVLLACSHAGFISQGIKFLG 395

Query: 339 GI-VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGH 395
            + ++ G+   +     +IDM  + G + ++ K+   M    + V W +++     +G+
Sbjct: 396 EMELKHGVVPTIQHYTCVIDMLGRAGQLEEAYKLAVTMPIQTNPVVWRALLAACQLYGN 454


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 189/539 (35%), Positives = 307/539 (56%), Gaps = 19/539 (3%)

Query: 86  GYTSFNCHNQAWTVFVEMVRNEVNP-------------NAFTLSSVLKACKGMKSLSNAA 132
           G   F+  + +W   V    NE  P             +     S L +C+ +  +    
Sbjct: 14  GKLRFSSASLSWQFDVNCNSNEPTPCSQESECSHVLHYDTKRFRSSLLSCRNLFQVRQ-- 71

Query: 133 LVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHS 192
            VH      G   ++ V N L+ +Y     ++++A+ +F+ M  ++  SW+ ++ GYA  
Sbjct: 72  -VHAQIATNGAFRNLAVANKLLYMYVERG-ALEDAQELFDGMSKRHPYSWSVIVGGYAKV 129

Query: 193 GNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVM 252
           GN +    +F+E+L  G  ++ YS  + +RAC     +  G+LIH   +K G      V 
Sbjct: 130 GNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLDYGHFVC 189

Query: 253 NSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFS 311
            +++DMY R   + DA+Q F +M ++DL TW  +I    +SG   E L  F +M+++   
Sbjct: 190 ATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQGIV 249

Query: 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKI 371
           P+     +++ ACA L A++  + +HA I   G   ++ L  A+IDMYAKCG++  ++ I
Sbjct: 250 PDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESARWI 309

Query: 372 FSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLV 431
           F  M  R+++TW++M+  YG HG G++A+ELF  M++SG+ P+RI F+++L ACSHAGL+
Sbjct: 310 FDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSHAGLI 369

Query: 432 DEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490
           +EG ++F SM ++Y V P+ + Y C+VDLLGRAGR+ EA E+I+ MP + DE +WG LLG
Sbjct: 370 EEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLG 429

Query: 491 ACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKE 550
           AC+ HR  +L +  A  +L L+    G Y++LSNIYA  GKWE+ AK R +M   G +K 
Sbjct: 430 ACRIHRHLDLAERVARSLLKLQSQKPGHYVLLSNIYANAGKWEDMAKTRDLMTKGGLRKI 489

Query: 551 VGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGET 609
            G +WIEV +K+  F   DK    +  +Y +L+ L   +    Y PD + +++D++ E 
Sbjct: 490 PGRTWIEVGEKLYQFGVGDKTHPRSNEIYKMLKRLGEKLEVAGYHPDTNDVLYDVDEEV 548



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 193/382 (50%), Gaps = 7/382 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A  L+  Y + G +E+A+ LFD M +R   SW+V++ GY         + +F E++R+ 
Sbjct: 87  VANKLLYMYVERGALEDAQELFDGMSKRHPYSWSVIVGGYAKVGNFFSCFWMFRELLRSG 146

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
              + ++   V++AC+ +K L    L+H + +K GL+   +V  +L+D+YA C + +++A
Sbjct: 147 APLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLDYGHFVCATLVDMYARCKV-VEDA 205

Query: 168 RLVFNDMKWKNDV-SWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
             +F  M WK D+ +WT +I   A SG     L  F  M  +G+  +  +    V ACA 
Sbjct: 206 HQIFVKM-WKRDLATWTVMIGALAESGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAK 264

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G ++  K IHA +   G+  ++ +  +++DMY +   +  A   FD M  +++ITW+ +
Sbjct: 265 LGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAM 324

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV-RRG 344
           IA Y   G  E  L +F  M      PN  TF S++ AC+    +  GQ+  + +    G
Sbjct: 325 IAAYGYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQRFFSSMWDEYG 384

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEAIELF 403
           +  ++     ++D+  + G + ++ ++   M  ++D V W +++     H H   A  + 
Sbjct: 385 VTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGACRIHRHLDLAERVA 444

Query: 404 DEMVK-SGVRPDRIVFMAVLTA 424
             ++K    +P   V ++ + A
Sbjct: 445 RSLLKLQSQKPGHYVLLSNIYA 466



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 43/76 (56%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           IL T +I  Y   G +E AR +FD M  R+V++W+ MIA Y       +A  +F  M+R+
Sbjct: 288 ILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRS 347

Query: 107 EVNPNAFTLSSVLKAC 122
            + PN  T  S+L AC
Sbjct: 348 GILPNRITFVSLLYAC 363


>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
          Length = 708

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 211/658 (32%), Positives = 339/658 (51%), Gaps = 85/658 (12%)

Query: 26  LQSVKKS--SIQSDPPLIPKGP---SILATNLIKSYFDEGLIEEARTLFDEMPER---DV 77
           LQ   KS  S Q    +I  G    + LA  ++  Y   GL+ +A+ +F+  P     ++
Sbjct: 41  LQQCSKSHLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNL 100

Query: 78  VSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGM 137
           + W  ++    +     +A  ++  M +  V+ + FT   V++AC  M S      VHG 
Sbjct: 101 LLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGH 160

Query: 138 AIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYG 197
            ++ G + +++V N LM +Y      MD+AR VF  M  ++ VSW T+++GYA + + +G
Sbjct: 161 VVEMGFQWNLHVGNELMGMYGKIG-RMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHG 219

Query: 198 GLGVFKEMLLEGVEMNPYSFS---------------------------------IAVRAC 224
              +F+ M   G+E N  +++                                 +AV   
Sbjct: 220 ASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLS 279

Query: 225 ASTGWVSF--GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
            S    +F  GK+IH  V+K GF + L V NS++ +Y +   ++ A   F E+  K++++
Sbjct: 280 VSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVS 339

Query: 283 WNTIIAGY----------------------------------------EKSGSSECLNMF 302
           WN +I+ Y                                         K    E L +F
Sbjct: 340 WNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELF 399

Query: 303 SKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362
            +M+  +   N  T  S+++ CA LAAL  G+++H  +VR  +DGN+ + N LI+MY K 
Sbjct: 400 RRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKS 459

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
           G+  +   +F ++ ++DL++W +M+ GYG HG G+ AI  FD+M+K G  PD + F+AVL
Sbjct: 460 GSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVL 519

Query: 423 TACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481
           +ACSHAGLV EG + F  M  ++ V P  E Y C+VDLLGRAG ++EA +++KSMP +P+
Sbjct: 520 SACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPN 579

Query: 482 ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKI 541
             VWG LL +C+ H+   + +  A ++ +L   + G+Y++LSNIYAA G+WE+ AK R  
Sbjct: 580 ACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRIS 639

Query: 542 MRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDID 599
            +  G KK  G SWI+V+ KV  F A +   +  + VY +L+ L   M    Y PDID
Sbjct: 640 AKTKGLKKTPGQSWIQVKKKVYMFSAGNTQHAELEEVYRILKDLGLQMEVEGYIPDID 697


>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
          Length = 1321

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 181/560 (32%), Positives = 314/560 (56%), Gaps = 4/560 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + T+LI  Y   G ++ A  ++D+M   D  +   +I+ Y       QA+ VF+++   
Sbjct: 149 FVCTSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNM 208

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
              PN +T S++L  C  + ++     +H   +K        V N+L+ +Y+ C + M+ 
Sbjct: 209 GTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGM-MEE 267

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A +VF  ++ +N +SWT  I G+   G+    L  F  M   G+E N ++FSI + +C  
Sbjct: 268 AEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGC 327

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLITWNT 285
                 G++ H  VIK G  S + V  +I+DMY     + +A + F +M      ++WN 
Sbjct: 328 VKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNA 387

Query: 286 IIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +IAGY  +   E  +  F +M  E  + N FT+++I  AC++  +L+   Q+H+ +++  
Sbjct: 388 LIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIKSN 447

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           ++ NL +A++LI+ Y +CG++ ++ ++F+++SD D+V+W S++  Y  +G   +AI L  
Sbjct: 448 VESNLHVASSLIEAYTQCGSLENAVQVFTQISDADVVSWNSIIKAYSQNGDPWKAIFLLR 507

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRA 463
           +M++ G +P    F+ VL+ACSH+GLV EG ++FKSM  DY++ P +    C+VD+LGRA
Sbjct: 508 KMIEEGNKPTSXTFLTVLSACSHSGLVQEGQEFFKSMVQDYSIQPEETHCSCMVDILGRA 567

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G+++ A + IK +  KP  S+W PLL AC+ +    + +  A ++LDL+PN    Y+ LS
Sbjct: 568 GQLENALDFIKKLTMKPTASIWRPLLAACRYNSNLQMAEYVAEKILDLEPNDATVYVTLS 627

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           N+YA  G+W +    R++M      KE G SWIEV +K+  F ++DK       VY  L+
Sbjct: 628 NMYAEVGRWADAENQRRLMEQKEISKEPGCSWIEVNNKMYKFFSHDKAHPEMPKVYEKLK 687

Query: 584 MLIRHMNETAYEPDIDCLIH 603
            L+R + +  Y P    ++H
Sbjct: 688 QLVRQIQDIGYSPPTTTVLH 707



 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 169/514 (32%), Positives = 282/514 (54%), Gaps = 34/514 (6%)

Query: 46   SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
            +  A  L+  Y + G +  AR LFD++P  ++  W V+         + +A + F EM +
Sbjct: 838  TYFAAKLMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQK 897

Query: 106  NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
              + PN F L S+LKAC  +        +H + +K   E   Y+ ++L+ +Y+ C   ++
Sbjct: 898  EGLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCG-HVE 956

Query: 166  NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
             A  VF+ +  K+ V    +++GYA  G  +  L + ++M   GV+ N  S++  +   +
Sbjct: 957  KACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFS 1016

Query: 226  STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
              G  S    +   +  +G                                E D+++W +
Sbjct: 1017 QVGDKSMVSEVFRLMTANG-------------------------------VEPDVVSWTS 1045

Query: 286  IIAGYEKS-GSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
            +I+G+ ++  + E  + F +M  + F P+  T +S++ AC  +A L  G+++H   +  G
Sbjct: 1046 VISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIG 1105

Query: 345  LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
            ++ ++ + +AL+DMYAKCG IS+++ +F  M +R+ VTW S++ GY  HG+  EAIELF+
Sbjct: 1106 VEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFN 1165

Query: 405  EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRA 463
            +M +S  + D + F AVL ACSHAG+V+ G   F  M + Y + P  E Y C+VDLLGRA
Sbjct: 1166 QMEESDTKLDHLTFTAVLNACSHAGMVELGESLFXKMQEKYRIEPRLEHYACMVDLLGRA 1225

Query: 464  GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
            G++ EAY+LIK+MP +PD+ VWG LLGAC+ H    L ++AA  + +L+P   G+ ++LS
Sbjct: 1226 GKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHLFELEPESPGSSLLLS 1285

Query: 524  NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIE 557
            N+YA  G+W   AK +K+M+     K  G SWIE
Sbjct: 1286 NLYADAGRWGNAAKMKKMMKQRKFGKFPGCSWIE 1319



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 179/366 (48%), Gaps = 4/366 (1%)

Query: 135 HGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGN 194
           H   +K GL    +V  SL+D+YA C   +D+A  V++ M   +  +   LI+ YA +G 
Sbjct: 136 HCFVVKIGLGSDEFVCTSLIDMYAKCG-EVDSAVRVYDKMTSLDAATCNCLISAYARNGF 194

Query: 195 GYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNS 254
                 VF ++   G   N Y++S  +  C +   +  GK +HA V+K  + S   V N+
Sbjct: 195 FVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNA 254

Query: 255 ILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPN 313
           +L +Y +   + +A   F+ + ++++I+W   I G+ + G   + L  FS M+     PN
Sbjct: 255 LLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPN 314

Query: 314 CFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFS 373
            FTF+ ++A+C  +     G+  H  ++++G+   + +  A+IDMY+  G + +++K F 
Sbjct: 315 EFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFK 374

Query: 374 EMSD-RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD 432
           +M      V+W +++ GY  +   ++A+E F  MVK  V  +   +  +  ACS    + 
Sbjct: 375 QMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLA 434

Query: 433 EGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGAC 492
             ++    +   NV  N  +   +++   + G ++ A ++   +    D   W  ++ A 
Sbjct: 435 TTVQIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQIS-DADVVSWNSIIKAY 493

Query: 493 KEHRLP 498
            ++  P
Sbjct: 494 SQNGDP 499



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 146/283 (51%), Gaps = 2/283 (0%)

Query: 209 GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDA 268
           G     Y FS A+  C   G V  G+  H  V+K G GS+  V  S++DMY +   +  A
Sbjct: 109 GFPHRQYVFS-ALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSA 167

Query: 269 NQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATL 327
            + +D+MT  D  T N +I+ Y ++G   +   +F ++ +    PN +T+++++A C T+
Sbjct: 168 VRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTI 227

Query: 328 AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMM 387
           +A+  G+Q+HA +V+       A+ NAL+ +Y+KCG + +++ +F  +  R++++WT+ +
Sbjct: 228 SAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASI 287

Query: 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN 447
            G+  HG  K+A++ F  M +SG+ P+   F  VL +C       +G  +   +    + 
Sbjct: 288 NGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMA 347

Query: 448 PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490
               +   ++D+    G + EA +  K M        W  L+ 
Sbjct: 348 SGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIA 390



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 89/379 (23%), Positives = 165/379 (43%), Gaps = 50/379 (13%)

Query: 126  KSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTL 185
            ++L     +H   +  GL    Y    LM  Y T C  + NAR +F+ +   N   W  L
Sbjct: 817  RALYRGRALHAHLVIIGLARLTYFAAKLMSFY-TECGQLSNARKLFDKIPNTNIRRWIVL 875

Query: 186  ITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGF 245
                A  G     L  F EM  EG+  N +     ++AC        G+ +H  ++K+ F
Sbjct: 876  TGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSF 935

Query: 246  GSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSK 304
             S+  ++++++ MY +   +  A + FD + +KDL+  N +++GY + G   E LB+  K
Sbjct: 936  ESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQK 995

Query: 305  MKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGN 364
            M+     PN  ++ ++IA                                    +++ G+
Sbjct: 996  MQQAGVKPNVVSWNTLIAG-----------------------------------FSQVGD 1020

Query: 365  ISDSQKIFSEMS----DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420
             S   ++F  M+    + D+V+WTS++ G+  + H  E  + F EM+  G  P  +   +
Sbjct: 1021 KSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISS 1080

Query: 421  VLTACSHAGLVDEGLKYFKSMNDYN--VNPNKEIY--GCVVDLLGRAGRVKEAYELIKSM 476
            +L AC++       L++ K ++ Y   +   K++Y    +VD+  + G + EA  L   M
Sbjct: 1081 LLPACTNVA----NLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMM 1136

Query: 477  PFKPDESVWGPLLGACKEH 495
            P + +   W  L+     H
Sbjct: 1137 PER-NTVTWNSLIFGYANH 1154



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 10/261 (3%)

Query: 45   PSILATNLIKSYF----DEGLIEEA-RTLFDEMPERDVVSWTVMIAGYTSFNCHN-QAWT 98
            P++++ N + + F    D+ ++ E  R +     E DVVSWT +I+G+   N HN + + 
Sbjct: 1003 PNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQ-NFHNHEGFD 1061

Query: 99   VFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA 158
             F EM+     P++ T+SS+L AC  + +L +   +HG A+  G+E  +YV ++L+D+YA
Sbjct: 1062 AFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYA 1121

Query: 159  TCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFS 218
             C   +  A+++F  M  +N V+W +LI GYA+ G     + +F +M     +++  +F+
Sbjct: 1122 KCGY-ISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFT 1180

Query: 219  IAVRACASTGWVSFGK-LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-T 276
              + AC+  G V  G+ L      K+     L     ++D+  R   LS+A      M  
Sbjct: 1181 AVLNACSHAGMVELGESLFXKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPV 1240

Query: 277  EKDLITWNTIIAGYEKSGSSE 297
            E D   W  ++      G+ E
Sbjct: 1241 EPDKFVWGALLGACRNHGNIE 1261



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 138/311 (44%), Gaps = 11/311 (3%)

Query: 262  FDCLSDANQYFDEMTEKDLITWNTIIAGYEK-SGSSECLNMFSKMKSER-FSPNCFTFTS 319
             DC S   +Y   +T++ + T     A  +     +    ++  + + R F  +  T+  
Sbjct: 750  LDCYSTM-KYISRITDRYIPTPLAAAAAMQSLINRANVYRVYRNISTHRTFQSSSDTYAK 808

Query: 320  IIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD 379
             I   A   AL  G+ +HA +V  GL      A  L+  Y +CG +S+++K+F ++ + +
Sbjct: 809  AIDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFDKIPNTN 868

Query: 380  LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439
            +  W  +       G  +EA+  F EM K G+RP++ V  ++L AC H      G     
Sbjct: 869  IRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGENMHT 928

Query: 440  SMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN 499
             +   +   +  I   ++ +  + G V++A  +   +  K D  V   ++    +H   +
Sbjct: 929  VILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDK-DLVVMNAMVSGYAQHGFVH 987

Query: 500  --LGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIE 557
              L  +  ++   +KPN++    +++  ++  G     ++  ++M   G + +V +SW  
Sbjct: 988  EALBLVQKMQQAGVKPNVVSWNTLIAG-FSQVGDKSMVSEVFRLMTANGVEPDV-VSWTS 1045

Query: 558  VRDKVCGFIAN 568
            V   + GF+ N
Sbjct: 1046 V---ISGFVQN 1053



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 111/247 (44%), Gaps = 12/247 (4%)

Query: 319 SIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR 378
           S ++ C     +  G++ H  +V+ GL  +  +  +LIDMYAKCG +  + +++ +M+  
Sbjct: 118 SALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSL 177

Query: 379 DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYF 438
           D  T   ++  Y  +G   +A ++F ++   G RP+   +  +L  C     + EG +  
Sbjct: 178 DAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLH 237

Query: 439 KSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR-- 496
             +          +   ++ L  + G ++EA  + +S+  +   S W   +    +H   
Sbjct: 238 AHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIIS-WTASINGFYQHGDF 296

Query: 497 LPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRK-----IMRGMGSKKEV 551
              L + + +R   ++PN     I+L    A+ G  ++F   R      I +GM S   V
Sbjct: 297 KKALKQFSMMRESGIEPNEFTFSIVL----ASCGCVKDFIDGRMFHTQVIKKGMASGVFV 352

Query: 552 GMSWIEV 558
           G + I++
Sbjct: 353 GTAIIDM 359


>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
          Length = 954

 Score =  355 bits (910), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 211/658 (32%), Positives = 339/658 (51%), Gaps = 85/658 (12%)

Query: 26  LQSVKKS--SIQSDPPLIPKGP---SILATNLIKSYFDEGLIEEARTLFDEMPER---DV 77
           LQ   KS  S Q    +I  G    + LA  ++  Y   GL+ +A+ +F+  P     ++
Sbjct: 41  LQQCSKSHLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNL 100

Query: 78  VSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGM 137
           + W  ++    +     +A  ++  M +  V+ + FT   V++AC  M S      VHG 
Sbjct: 101 LLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGH 160

Query: 138 AIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYG 197
            ++ G + +++V N LM +Y      MD+AR VF  M  ++ VSW T+++GYA + + +G
Sbjct: 161 VVEMGFQWNLHVGNELMGMYGKIG-RMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHG 219

Query: 198 GLGVFKEMLLEGVEMNPYSFS---------------------------------IAVRAC 224
              +F+ M   G+E N  +++                                 +AV   
Sbjct: 220 ASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLS 279

Query: 225 ASTGWVSF--GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
            S    +F  GK+IH  V+K GF + L V NS++ +Y +   ++ A   F E+  K++++
Sbjct: 280 VSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVS 339

Query: 283 WNTIIAGY----------------------------------------EKSGSSECLNMF 302
           WN +I+ Y                                         K    E L +F
Sbjct: 340 WNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELF 399

Query: 303 SKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362
            +M+  +   N  T  S+++ CA LAAL  G+++H  +VR  +DGN+ + N LI+MY K 
Sbjct: 400 RRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKS 459

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
           G+  +   +F ++ ++DL++W +M+ GYG HG G+ AI  FD+M+K G  PD + F+AVL
Sbjct: 460 GSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVL 519

Query: 423 TACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481
           +ACSHAGLV EG + F  M  ++ V P  E Y C+VDLLGRAG ++EA +++KSMP +P+
Sbjct: 520 SACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPN 579

Query: 482 ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKI 541
             VWG LL +C+ H+   + +  A ++ +L   + G+Y++LSNIYAA G+WE+ AK R  
Sbjct: 580 ACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRIS 639

Query: 542 MRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDID 599
            +  G KK  G SWI+V+ KV  F A +   +  + VY +L+ L   M    Y PDID
Sbjct: 640 AKTKGLKKTPGQSWIQVKKKVYMFSAGNTQHAELEEVYRILKDLGLQMEVEGYIPDID 697


>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
 gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
 gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
 gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 857

 Score =  354 bits (909), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 179/554 (32%), Positives = 319/554 (57%), Gaps = 6/554 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +  +L+  Y   G  ++A  LF  M   D V+W  MI+GY       ++ T F EM+ + 
Sbjct: 276 IKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSG 335

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDN 166
           V P+A T SS+L +    ++L     +H   ++  +   I++ ++L+D Y  C  +SM  
Sbjct: 336 VLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSM-- 393

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A+ +F+     + V +T +I+GY H+G     L +F+ ++   +  N  +    +     
Sbjct: 394 AQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGI 453

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  G+ +H  +IK GF +   +  +++DMY +   ++ A + F+ ++++D+++WN++
Sbjct: 454 LLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSM 513

Query: 287 IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I    +S + S  +++F +M       +C + ++ ++ACA L + S G+ +H  +++  L
Sbjct: 514 ITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSL 573

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             ++   + LIDMYAKCGN+  +  +F  M ++++V+W S++   G HG  K+++ LF E
Sbjct: 574 ASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHE 633

Query: 406 MV-KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRA 463
           MV KSG+RPD+I F+ ++++C H G VDEG+++F+SM  DY + P +E Y CVVDL GRA
Sbjct: 634 MVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRA 693

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           GR+ EAYE +KSMPF PD  VWG LLGAC+ H+   L ++A+ +++DL P+  G Y+++S
Sbjct: 694 GRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLIS 753

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           N +A   +WE   K R +M+    +K  G SWIE+  +   F++ D     + ++Y +L 
Sbjct: 754 NAHANAREWESVTKVRSLMKEREVQKIPGYSWIEINKRTHLFVSGDVNHPESSHIYSLLN 813

Query: 584 MLIRHMNETAYEPD 597
            L+  +    Y P 
Sbjct: 814 SLLGELRLEGYIPQ 827



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 127/449 (28%), Positives = 228/449 (50%), Gaps = 3/449 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A++LIK+Y + G I+    LFD + ++D V W VM+ GY      +     F  M  ++
Sbjct: 175 VASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQ 234

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           ++PNA T   VL  C     +     +HG+ +  G++    ++NSL+ +Y+ C    D+A
Sbjct: 235 ISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCG-RFDDA 293

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             +F  M   + V+W  +I+GY  SG     L  F EM+  GV  +  +FS  + + +  
Sbjct: 294 SKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKF 353

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             + + K IH  +++H    ++ + ++++D Y +   +S A   F +    D++ +  +I
Sbjct: 354 ENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMI 413

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           +GY  +G   + L MF  +   + SPN  T  SI+     L AL  G+++H  I+++G D
Sbjct: 414 SGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFD 473

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
               +  A+IDMYAKCG ++ + +IF  +S RD+V+W SM+       +   AI++F +M
Sbjct: 474 NRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQM 533

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
             SG+  D +   A L+AC++      G      M  +++  +      ++D+  + G +
Sbjct: 534 GVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNL 593

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEH 495
           K A  + K+M  K   S W  ++ AC  H
Sbjct: 594 KAAMNVFKTMKEKNIVS-WNSIIAACGNH 621



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 126/485 (25%), Positives = 232/485 (47%), Gaps = 27/485 (5%)

Query: 36  SDPPLIPKGPSILATNLIKS-----YFDE---------GLIEEARTLFDEMPER--DVVS 79
           S+P L+ +G  + A  ++ S     Y DE         G   +   +F  +  R   +  
Sbjct: 46  SNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRP 105

Query: 80  WTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAI 139
           W  +I+ +      NQA   + +M+   V+P+  T   ++KAC  +K+      +     
Sbjct: 106 WNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFLSDTVS 165

Query: 140 KEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGL 199
             G++ + +V +SL+  Y      +D    +F+ +  K+ V W  ++ GYA  G     +
Sbjct: 166 SLGMDCNEFVASSLIKAYLEYG-KIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVI 224

Query: 200 GVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMY 259
             F  M ++ +  N  +F   +  CAS   +  G  +H  V+  G      + NS+L MY
Sbjct: 225 KGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMY 284

Query: 260 CRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFT 318
            +     DA++ F  M+  D +TWN +I+GY +SG   E L  F +M S    P+  TF+
Sbjct: 285 SKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFS 344

Query: 319 SIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR 378
           S++ + +    L   +Q+H  I+R  +  ++ L +ALID Y KC  +S +Q IFS+ +  
Sbjct: 345 SLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSV 404

Query: 379 DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYF 438
           D+V +T+M+ GY  +G   +++E+F  +VK  + P+ I  +++L        +   LK  
Sbjct: 405 DVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIG----ILLALKLG 460

Query: 439 KSMNDYNVNP---NKEIYGC-VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKE 494
           + ++ + +     N+   GC V+D+  + GR+  AYE+ + +  K D   W  ++  C +
Sbjct: 461 RELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLS-KRDIVSWNSMITRCAQ 519

Query: 495 HRLPN 499
              P+
Sbjct: 520 SDNPS 524



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 98/332 (29%), Positives = 166/332 (50%), Gaps = 6/332 (1%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFN-D 173
           LS +L+AC     L     VH   I   + G  Y +  ++ +YA C    D  ++ +  D
Sbjct: 38  LSLLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLD 97

Query: 174 MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG 233
           ++  +   W ++I+ +  +G     L  + +ML  GV  +  +F   V+AC +       
Sbjct: 98  LRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGI 157

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
             +   V   G   N  V +S++  Y  +  +   ++ FD + +KD + WN ++ GY K 
Sbjct: 158 DFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKC 217

Query: 294 GS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
           G+    +  FS M+ ++ SPN  TF  +++ CA+   +  G Q+H  +V  G+D   ++ 
Sbjct: 218 GALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIK 277

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
           N+L+ MY+KCG   D+ K+F  MS  D VTW  M+ GY   G  +E++  F EM+ SGV 
Sbjct: 278 NSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVL 337

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDY 444
           PD I F ++L + S      E L+Y K ++ Y
Sbjct: 338 PDAITFSSLLPSVSKF----ENLEYCKQIHCY 365



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 127/282 (45%), Gaps = 4/282 (1%)

Query: 211 EMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQ 270
           E  P   S+ ++AC++   +  GK +HA +I +    +      IL MY      SD  +
Sbjct: 32  ETIPRRLSLLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGK 91

Query: 271 YFD--EMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATL 327
            F   ++    +  WN+II+ + ++G  ++ L  + KM     SP+  TF  ++ AC  L
Sbjct: 92  MFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVAL 151

Query: 328 AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMM 387
                   +   +   G+D N  +A++LI  Y + G I    K+F  +  +D V W  M+
Sbjct: 152 KNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVML 211

Query: 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN 447
            GY   G     I+ F  M    + P+ + F  VL+ C+   L+D G++    +    V+
Sbjct: 212 NGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVD 271

Query: 448 PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
               I   ++ +  + GR  +A +L + M  + D   W  ++
Sbjct: 272 FEGSIKNSLLSMYSKCGRFDDASKLFRMMS-RADTVTWNCMI 312


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  354 bits (909), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 209/587 (35%), Positives = 317/587 (54%), Gaps = 39/587 (6%)

Query: 60  GLIEEARTLFDEMPER---DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLS 116
           G +  A +LF+E  +    +V  W  +I GY+  +    +  +F  M+   V PN+ T  
Sbjct: 76  GDLSYALSLFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFP 135

Query: 117 SVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW 176
            + K+C   K+      +H  A+K  L  + +V  S++ +YA+    MD ARLVF+    
Sbjct: 136 FLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVG-EMDFARLVFDKSSL 194

Query: 177 KNDVSWTTLITGYAHSG------------------------NGYGGLGVFKEMLLEGVEM 212
           ++ VS+T LITGY   G                        +GY   G F+E ++   EM
Sbjct: 195 RDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEM 254

Query: 213 -------NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCL 265
                  N  +  + + AC  T     GK I + V  +GFGSNL + N+++DMYC+    
Sbjct: 255 QEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGET 314

Query: 266 SDANQYFDEMTEKDLITWNTIIAGYEK-SGSSECLNMFSKMKSERFSPNCFTFTSIIAAC 324
             A + FD + EKD+I+WNT+I GY   S   E L +F  M      PN  TF  I+ AC
Sbjct: 315 DIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHAC 374

Query: 325 ATLAALSCGQQVHAGIVRRGLDG-NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTW 383
           A L AL  G+ VHA I +   +  N +L  +LIDMYAKCG I  ++++F  M  R+L +W
Sbjct: 375 ACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASW 434

Query: 384 TSMMIGYGAHGHGKEAIELFDEMVKSGV-RPDRIVFMAVLTACSHAGLVDEGLKYFKSM- 441
            +M+ G+  HGH + A+ LF EMV  G+ RPD I F+ VL+AC+ AGLVD G +YF+SM 
Sbjct: 435 NAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMI 494

Query: 442 NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLG 501
            DY ++P  + YGC++DLL RA + +EA  L+K+M  +PD ++WG LL ACK H     G
Sbjct: 495 QDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAHGRVEFG 554

Query: 502 KLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDK 561
           +  A R+  L+P   G +++LSNIYA  G+W++ A+ R  +   G KK  G + IE+   
Sbjct: 555 EYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTSIEIDGD 614

Query: 562 VCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           V  F+  DK       +Y +L  + + + E  + P+   +++D++ E
Sbjct: 615 VHEFLVGDKFHPECNNIYKMLNEVDKLLEENGFVPNTSEVLYDMDEE 661



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 107/350 (30%), Positives = 179/350 (51%), Gaps = 6/350 (1%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T LI  Y  +G +++AR LFDE+P +DVVSW  MI+GY       +A   F EM    V 
Sbjct: 201 TALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVL 260

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           PN  T+  VL AC   +S      +       G   ++ + N+L+D+Y  C    D AR 
Sbjct: 261 PNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCG-ETDIARE 319

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           +F+ ++ K+ +SW T+I GY++       L +F+ ML   V+ N  +F   + ACA  G 
Sbjct: 320 LFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGA 379

Query: 230 VSFGKLIHAAVIKH-GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
           +  GK +HA + K+    SN  +  S++DMY +  C+  A + F  M  ++L +WN +++
Sbjct: 380 LDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLS 439

Query: 289 GYEKSGSSE-CLNMFSKMKSE-RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-GL 345
           G+   G +E  L +FS+M ++  F P+  TF  +++AC     +  G Q    +++  G+
Sbjct: 440 GFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGI 499

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHG 394
              L     +ID+ A+     +++ +   M  + D   W S++    AHG
Sbjct: 500 SPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAHG 549



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 131/274 (47%), Gaps = 14/274 (5%)

Query: 44  GPSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           G ++  TN LI  Y   G  + AR LFD + E+DV+SW  MI GY+  + + +A  +F  
Sbjct: 295 GSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEV 354

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVE--NSLMDVYATC 160
           M+R+ V PN  T   +L AC  + +L     VH   I + L  S       SL+D+YA C
Sbjct: 355 MLRSNVKPNDVTFLGILHACACLGALDLGKWVHAY-IDKNLRNSSNASLWTSLIDMYAKC 413

Query: 161 -CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGV-EMNPYSFS 218
            CI  + A  VF  M  +N  SW  +++G+A  G+    L +F EM+ +G+   +  +F 
Sbjct: 414 GCI--EAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFV 471

Query: 219 IAVRACASTGWVSFGKLIHAAVIK-HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT- 276
             + AC   G V  G     ++I+ +G    L     ++D+  R +   +A      M  
Sbjct: 472 GVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEM 531

Query: 277 EKDLITWNTIIAGYEKSGSSECLNMFSKMKSERF 310
           E D   W ++++  +  G  E    F +  +ER 
Sbjct: 532 EPDGAIWGSLLSACKAHGRVE----FGEYVAERL 561



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 64/141 (45%), Gaps = 5/141 (3%)

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYA--KCGNISDSQKIFSEMSD---RDLVTWTSMMI 388
           +Q+H+ I++ GL+  + + + LI   A    G++S +  +F E       ++  W S++ 
Sbjct: 45  KQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEENQQHHKHNVFIWNSLIR 104

Query: 389 GYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP 448
           GY        ++ LF  M+  GV+P+   F  +  +C+ A    EG +         ++ 
Sbjct: 105 GYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHF 164

Query: 449 NKEIYGCVVDLLGRAGRVKEA 469
           N  ++  V+ +    G +  A
Sbjct: 165 NPHVHTSVIHMYASVGEMDFA 185


>gi|297838697|ref|XP_002887230.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297333071|gb|EFH63489.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1347

 Score =  354 bits (909), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 189/537 (35%), Positives = 312/537 (58%), Gaps = 5/537 (0%)

Query: 48   LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
            L  +L+  Y   G +  +  +F+++ +++ VSWT MI+ Y       +A   F EM+++ 
Sbjct: 797  LCNSLLTMYSKCGDLLSSEKIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMLKSG 856

Query: 108  VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSI-YVENSLMDVYATCCISMDN 166
            + PN  TL S+L +C     +     VHG AI+  L+ +   +  +L+++YA C   + +
Sbjct: 857  IEPNLVTLYSILSSCGLNGLIREGKSVHGFAIRRELDPNYESLSPALVELYAECG-RLGD 915

Query: 167  ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
               + + +  +N V W + I+ YAH G     L +F++M+   ++ + ++ +  + AC +
Sbjct: 916  CETILHVVGDRNIVLWNSHISLYAHRGMVIEALCLFRQMVTWRIKPDSFTLASIISACEN 975

Query: 227  TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            TG V  GK IH  VI+        V NS++DMY +   ++ A   FD++  + ++TWN++
Sbjct: 976  TGLVRLGKQIHGHVIRTDVSDEF-VQNSVIDMYSKSGFVNLACTVFDQIKHRSIVTWNSM 1034

Query: 287  IAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
            + G+ ++G+S E +N+F  M       N  TF ++I AC+++ +L  G+ VH  ++  G+
Sbjct: 1035 LCGFSQNGNSLEAINLFDYMYHSCLEINKVTFLAVIQACSSIGSLEKGRWVHHKLIVCGI 1094

Query: 346  DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
              +L    ALIDMYAKCG+++ ++ +F  MS+R +V+W+SM+  YG HG    AI  F++
Sbjct: 1095 K-DLFTDTALIDMYAKCGDLNTAETVFRAMSNRSIVSWSSMINAYGMHGRIGSAISTFNQ 1153

Query: 406  MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
            MV+SG +P+ +VFM VL+AC H+G V+EG  YF  M  + V+PN E + C +DLL R+G 
Sbjct: 1154 MVESGTKPNEVVFMNVLSACGHSGSVEEGKYYFNLMKLFGVSPNSEHFACFIDLLSRSGD 1213

Query: 466  VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
            +KEAY  IK MPF  D SVWG L+  C+ H+  ++ K     + D+  +  G Y +LSNI
Sbjct: 1214 LKEAYRTIKEMPFLADASVWGSLVNGCRIHQKMDIIKAIKNDISDIVTDDTGYYTLLSNI 1273

Query: 526  YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
            YA EG+WEEF + R  M+ +  KK  G S IE+  KV  F A ++    T+ +Y  L
Sbjct: 1274 YAEEGEWEEFRRMRSAMKSLNLKKVPGYSAIEIDKKVFRFGAGEETCFQTEEIYMFL 1330



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 144/541 (26%), Positives = 252/541 (46%), Gaps = 54/541 (9%)

Query: 46   SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHN-QAWTVFVEMV 104
            +++ T+L+  Y   G + +A  +FD MP RD+V+W+ +++     NC   +A  +F  MV
Sbjct: 694  AVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLE-NCEVLKALRMFKCMV 752

Query: 105  RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
             + V P+A T+ SV++ C  +  L  A  VHG   ++  +    + NSL+ +Y+ C   +
Sbjct: 753  DDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDFDETLCNSLLTMYSKCGDLL 812

Query: 165  DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
             + + +F  +  KN VSWT +I+ Y         L  F EML  G+E N  +    + +C
Sbjct: 813  SSEK-IFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMLKSGIEPNLVTLYSILSSC 871

Query: 225  ASTGWVSFGKLIHAAVIKHGFGSNLPVMN-SILDMYCRFDCLSDANQYFDEMTEKDLITW 283
               G +  GK +H   I+     N   ++ +++++Y     L D       + +++++ W
Sbjct: 872  GLNGLIREGKSVHGFAIRRELDPNYESLSPALVELYAECGRLGDCETILHVVGDRNIVLW 931

Query: 284  NTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
            N+ I+ Y   G   E L +F +M + R  P+ FT  SII+AC     +  G+Q+H  ++R
Sbjct: 932  NSHISLYAHRGMVIEALCLFRQMVTWRIKPDSFTLASIISACENTGLVRLGKQIHGHVIR 991

Query: 343  RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
              +     + N++IDMY+K G ++ +  +F ++  R +VTW SM+ G+  +G+  EAI L
Sbjct: 992  TDVSDEF-VQNSVIDMYSKSGFVNLACTVFDQIKHRSIVTWNSMLCGFSQNGNSLEAINL 1050

Query: 403  FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG---------------------LKYFKSM 441
            FD M  S +  +++ F+AV+ ACS  G +++G                     +  +   
Sbjct: 1051 FDYMYHSCLEINKVTFLAVIQACSSIGSLEKGRWVHHKLIVCGIKDLFTDTALIDMYAKC 1110

Query: 442  NDYNVN-------PNKEI--YGCVVDLLGRAGRVKEAYELIKSMP---FKPDESVWGPLL 489
             D N          N+ I  +  +++  G  GR+  A      M     KP+E V+  +L
Sbjct: 1111 GDLNTAETVFRAMSNRSIVSWSSMINAYGMHGRIGSAISTFNQMVESGTKPNEVVFMNVL 1170

Query: 490  GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKK 549
             AC        GK                Y  L  ++      E FA F  ++   G  K
Sbjct: 1171 SACGHSGSVEEGKY---------------YFNLMKLFGVSPNSEHFACFIDLLSRSGDLK 1215

Query: 550  E 550
            E
Sbjct: 1216 E 1216



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 121/423 (28%), Positives = 218/423 (51%), Gaps = 5/423 (1%)

Query: 50   TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
            T LI+SY   G  + +R +F+  P  D   + V+I      +  + A  ++  +V  +  
Sbjct: 596  TKLIESYAFMGSPDSSRLVFEAFPYPDSFMYGVLIKCNVWCHLLDAAIDLYHRLVSEKTQ 655

Query: 110  PNAFTLSSVLKACKGMKS-LSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
             + F   SVL+AC G +  LS    VHG  IK G++    +E SL+ +Y     ++ +A 
Sbjct: 656  ISKFVFPSVLRACAGSREHLSVGRKVHGRIIKSGVDDDAVIETSLLCMYGQTG-NLSDAE 714

Query: 169  LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
             VF+ M  ++ V+W+TL++    +      L +FK M+ +GVE +  +    V  CA  G
Sbjct: 715  KVFDGMPVRDLVAWSTLVSSCLENCEVLKALRMFKCMVDDGVEPDAVTMISVVEGCAELG 774

Query: 229  WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
             +   + +H  + +  F  +  + NS+L MY +   L  + + F+++ +K+ ++W  +I+
Sbjct: 775  CLRIARSVHGQITRKMFDFDETLCNSLLTMYSKCGDLLSSEKIFEKIAKKNAVSWTAMIS 834

Query: 289  GYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
             Y +   SE  L  FS+M      PN  T  SI+++C     +  G+ VH   +RR LD 
Sbjct: 835  SYNRGEFSEKALRSFSEMLKSGIEPNLVTLYSILSSCGLNGLIREGKSVHGFAIRRELDP 894

Query: 348  NL-ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            N  +L+ AL+++YA+CG + D + I   + DR++V W S +  Y   G   EA+ LF +M
Sbjct: 895  NYESLSPALVELYAECGRLGDCETILHVVGDRNIVLWNSHISLYAHRGMVIEALCLFRQM 954

Query: 407  VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
            V   ++PD     ++++AC + GLV  G +    +   +V+ ++ +   V+D+  ++G V
Sbjct: 955  VTWRIKPDSFTLASIISACENTGLVRLGKQIHGHVIRTDVS-DEFVQNSVIDMYSKSGFV 1013

Query: 467  KEA 469
              A
Sbjct: 1014 NLA 1016



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 178/377 (47%), Gaps = 37/377 (9%)

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
           S D++RLVF    + +   +  LI            + ++  ++ E  +++ + F   +R
Sbjct: 607 SPDSSRLVFEAFPYPDSFMYGVLIKCNVWCHLLDAAIDLYHRLVSEKTQISKFVFPSVLR 666

Query: 223 ACA-STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
           ACA S   +S G+ +H  +IK G   +  +  S+L MY +   LSDA + FD M  +DL+
Sbjct: 667 ACAGSREHLSVGRKVHGRIIKSGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLV 726

Query: 282 TWNTIIAG-YEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
            W+T+++   E     + L MF  M  +   P+  T  S++  CA L  L   + VH  I
Sbjct: 727 AWSTLVSSCLENCEVLKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQI 786

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
            R+  D +  L N+L+ MY+KCG++  S+KIF +++ ++ V+WT+M+  Y      ++A+
Sbjct: 787 TRKMFDFDETLCNSLLTMYSKCGDLLSSEKIFEKIAKKNAVSWTAMISSYNRGEFSEKAL 846

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE-IYGCVVDL 459
             F EM+KSG+ P+ +   ++L++C   GL+ EG           ++PN E +   +V+L
Sbjct: 847 RSFSEMLKSGIEPNLVTLYSILSSCGLNGLIREGKSVHGFAIRRELDPNYESLSPALVEL 906

Query: 460 LGRAGR-------------------------------VKEAYELIKSM---PFKPDESVW 485
               GR                               V EA  L + M     KPD    
Sbjct: 907 YAECGRLGDCETILHVVGDRNIVLWNSHISLYAHRGMVIEALCLFRQMVTWRIKPDSFTL 966

Query: 486 GPLLGACKEHRLPNLGK 502
             ++ AC+   L  LGK
Sbjct: 967 ASIISACENTGLVRLGK 983


>gi|20146226|dbj|BAB89008.1| PPR repeat protein-like [Oryza sativa Japonica Group]
 gi|125573391|gb|EAZ14906.1| hypothetical protein OsJ_04836 [Oryza sativa Japonica Group]
          Length = 785

 Score =  354 bits (909), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 187/557 (33%), Positives = 315/557 (56%), Gaps = 11/557 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            ++ +L+  Y   G + EAR +FD   ERD VSW  +++GY       +   VF  M R 
Sbjct: 145 FVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRG 204

Query: 107 EVNPNAFTLSSVLKAC--KGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
            +  N+F L SV+K C  +G  ++  A  VHG  IK GL+  +++ ++++D+YA     +
Sbjct: 205 GMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALV 264

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYG------GLGVFKEMLLEGVEMNPYSFS 218
           + A L F  ++  N V + T+I G+  +    G       L ++ E+   G++   ++FS
Sbjct: 265 EAAAL-FRSVQEPNVVMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFS 323

Query: 219 IAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK 278
             +RAC   G++ FGK IH  VIK+ F  +  + ++++D+Y    C+ D  + F    + 
Sbjct: 324 SVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKH 383

Query: 279 DLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
           D++TW  +++G  ++   E  L++F +       P+ FT +S++ ACA+LA    G+Q+ 
Sbjct: 384 DIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQ 443

Query: 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
               + G D    + N+ + MYA+ G++  + + F EM   D+V+W++++  +  HG  +
Sbjct: 444 CFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCAR 503

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCV 456
           +A+  FDEMV + V P+ I F+ VLTACSH GLVDEGL+Y+++M  DY ++P  +   CV
Sbjct: 504 DALHFFDEMVDAKVVPNEITFLGVLTACSHGGLVDEGLRYYETMTKDYGLSPTIKHCTCV 563

Query: 457 VDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMM 516
           VDLLGRAGR+ +A   I +  F  D  +W  LL +C+ HR    G+L A R+++L+P   
Sbjct: 564 VDLLGRAGRLADAEAFISNSIFHADPVIWRSLLASCRIHRDLERGQLVANRIMELEPTSS 623

Query: 517 GTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQ 576
            +Y+IL N+Y   G+    +K R +M+  G KKE G+SWIE++  V  F+A DK    + 
Sbjct: 624 ASYVILYNMYLDAGELSLASKTRDLMKQRGVKKEPGLSWIELKCGVHSFVAGDKSHPESS 683

Query: 577 YVYGVLEMLIRHMNETA 593
            +Y  LE ++  + + A
Sbjct: 684 AIYTKLEEMLSRIEKLA 700



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 129/468 (27%), Positives = 231/468 (49%), Gaps = 21/468 (4%)

Query: 42  PKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFV 101
           P     L   L+ +Y   G    AR L DEMP R+ VS+ ++I  Y+       +     
Sbjct: 39  PAASLFLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLA 98

Query: 102 EMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
              R  V+ + F+ ++ L AC     L     VH +AI +GL   ++V NSL+ +Y+ C 
Sbjct: 99  RARRAGVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCG 158

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
             M  AR VF+  + ++DVSW +L++GY  +G     + VF  M   G+ +N ++    +
Sbjct: 159 -EMGEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVI 217

Query: 222 RACAST--GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
           + C+    G +   + +H  VIK G  S++ ++++++DMY +   L +A   F  + E +
Sbjct: 218 KCCSGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPN 277

Query: 280 LITWNTIIAGY-------EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSC 332
           ++ +NT+IAG+        K  +SE L ++S+++S    P  FTF+S++ AC     L  
Sbjct: 278 VVMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEF 337

Query: 333 GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA 392
           G+Q+H  +++     +  + +ALID+Y   G + D  + F      D+VTWT+M+ G   
Sbjct: 338 GKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQ 397

Query: 393 HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG--LKYFKS---MNDYNVN 447
           +   ++A+ LF E + +G++PD     +V+ AC+   +   G  ++ F +    + + V 
Sbjct: 398 NELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVM 457

Query: 448 PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            N       V +  R+G V  A    + M    D   W  ++    +H
Sbjct: 458 GNS-----CVHMYARSGDVDAATRRFQEME-SHDVVSWSAVISCHAQH 499



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 186/362 (51%), Gaps = 11/362 (3%)

Query: 145 GSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKE 204
            S+++ N+L+  Y      +  AR + ++M  +N VS+  LI  Y+  G     L     
Sbjct: 41  ASLFLRNTLLAAYCRLGGPLP-ARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLAR 99

Query: 205 MLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264
               GV+++ +S++ A+ AC+  G +  G+ +HA  I  G  S + V NS++ MY +   
Sbjct: 100 ARRAGVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGE 159

Query: 265 LSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAA 323
           + +A + FD   E+D ++WN++++GY ++G+  E + +F+ M+      N F   S+I  
Sbjct: 160 MGEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKC 219

Query: 324 CATL--AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLV 381
           C+      +   + VH  +++ GLD ++ L +A+IDMYAK G + ++  +F  + + ++V
Sbjct: 220 CSGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVV 279

Query: 382 TWTSMMIGYG------AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGL 435
            + +M+ G+             EA+ L+ E+   G++P    F +VL AC+ AG ++ G 
Sbjct: 280 MFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGK 339

Query: 436 KYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           +    +  Y    +  I   ++DL   +G +++ +   +S P K D   W  ++  C ++
Sbjct: 340 QIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSP-KHDIVTWTAMVSGCVQN 398

Query: 496 RL 497
            L
Sbjct: 399 EL 400



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 62/156 (39%), Gaps = 29/156 (18%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           +++  + +  Y   G ++ A   F EM   DVVSW+ +I+ +    C   A   F EMV 
Sbjct: 455 TVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVD 514

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDV-------YA 158
            +V PN  T   VL AC            HG  + EGL    Y E    D        + 
Sbjct: 515 AKVVPNEITFLGVLTACS-----------HGGLVDEGLR---YYETMTKDYGLSPTIKHC 560

Query: 159 TCCISM--------DNARLVFNDMKWKNDVSWTTLI 186
           TC + +        D    + N +   + V W +L+
Sbjct: 561 TCVVDLLGRAGRLADAEAFISNSIFHADPVIWRSLL 596


>gi|297736478|emb|CBI25349.3| unnamed protein product [Vitis vinifera]
          Length = 1241

 Score =  354 bits (909), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 197/563 (34%), Positives = 312/563 (55%), Gaps = 11/563 (1%)

Query: 29   VKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYT 88
            V K + Q DP         + T+L+  Y   G +E+A+ +FD++ +++V     MI+ + 
Sbjct: 675  VIKMNFQDDP--------YVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFI 726

Query: 89   SFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIY 148
                   A  ++ +M   E   ++FT+SS+L  C  + S      VH   IK  ++ ++ 
Sbjct: 727  GNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVA 786

Query: 149  VENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE 208
            ++++L+ +Y  C  S ++A  VF  MK ++ V+W ++I G+  +      L +F+ M  E
Sbjct: 787  IQSALLTMYYKCG-STEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKE 845

Query: 209  GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDA 268
            GV+ +    +  + A      V  G LIH   IK G  S++ V  S++DMY +F     A
Sbjct: 846  GVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESA 905

Query: 269  NQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATL 327
               F  M  K+L+ WN++I+ Y  +G  E  +N+  ++    F  +  + T+++ A +++
Sbjct: 906  EMVFSSMPNKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSV 965

Query: 328  AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMM 387
            AAL  G+ +HA  +R  +  +L + NALIDMY KCG +  +Q IF  M  R+LVTW SM+
Sbjct: 966  AALLKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMI 1025

Query: 388  IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNV 446
             GYG+HG+ +EA+ LF EM +S   PD + F+A++T+CSH+G+V+EGL  F+ M  +Y V
Sbjct: 1026 AGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGV 1085

Query: 447  NPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAAL 506
             P  E Y  VVDLLGRAGR+ +AY  I+ MP   D SVW  LL AC+ HR   LG+L A 
Sbjct: 1086 EPRMEHYASVVDLLGRAGRLDDAYSFIRGMPIDADRSVWLCLLFACRAHRNMELGELVAD 1145

Query: 507  RVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFI 566
             +L ++P     Y+ L N+Y     W+  A  R  M+G G KK  G SWIEV+++V  F 
Sbjct: 1146 NLLKMEPARGSNYVPLLNLYGEVEMWDRAANLRASMKGRGLKKSPGCSWIEVKNRVDVFF 1205

Query: 567  ANDKMGSHTQYVYGVLEMLIRHM 589
            + D   +    +Y  L  L  +M
Sbjct: 1206 SGDSSSTRRIEIYKTLSSLKSNM 1228



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 134/483 (27%), Positives = 241/483 (49%), Gaps = 23/483 (4%)

Query: 28  SVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPER-----DVVSWTV 82
           S+    +QSDP         +AT+LI  Y   GL+  A  +FD+M E      D+  W  
Sbjct: 466 SIVTMGLQSDP--------YIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNP 517

Query: 83  MIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG 142
           +I GY  +    +    F  M    + P+ ++LS VL  C  +        +HG  I+  
Sbjct: 518 VIDGYFKYGHFEEGLAQFCRMQELGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRNM 577

Query: 143 LEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVF 202
            EG  Y+E +L+ +Y++C   M+   L        N V+W  +I G+  +G     L ++
Sbjct: 578 FEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELY 637

Query: 203 KEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRF 262
                E  ++   SF+ A  AC+    + FG+ +H  VIK  F  +  V  S+L MY + 
Sbjct: 638 SLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKS 697

Query: 263 DCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSII 321
             + DA + FD++ +K++   N +I+ +  +G + + L +++KMK+     + FT +S++
Sbjct: 698 GSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLL 757

Query: 322 AACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLV 381
           + C+ + +   G+ VHA +++R +  N+A+ +AL+ MY KCG+  D+  +F  M +RD+V
Sbjct: 758 SGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVV 817

Query: 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441
            W SM+ G+  +   K+A++LF  M K GV+ D  V  +V++    AGL  E ++    +
Sbjct: 818 AWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVIS----AGLGLENVELGHLI 873

Query: 442 NDYNVNPNKE----IYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
           + + +    E    +   +VD+  + G  + A  +  SMP K +   W  ++     + L
Sbjct: 874 HGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNK-NLVAWNSMISCYSWNGL 932

Query: 498 PNL 500
           P +
Sbjct: 933 PEM 935



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/416 (24%), Positives = 201/416 (48%), Gaps = 12/416 (2%)

Query: 93  HNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENS 152
           ++QA  +  +   + +    FT  S+LK C  + +L +   +H   +  GL+   Y+  S
Sbjct: 422 YSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGLQSDPYIATS 481

Query: 153 LMDVYATCCISMDNARLVFNDMKWKNDVS-----WTTLITGYAHSGNGYGGLGVFKEMLL 207
           L+++Y  C + + +A  VF+ M    D +     W  +I GY   G+   GL  F  M  
Sbjct: 482 LINMYVKCGL-LGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRMQE 540

Query: 208 EGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSD 267
            G+  + YS SI +  C    W   G+ IH  +I++ F  +  +  +++ MY       +
Sbjct: 541 LGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPME 600

Query: 268 ANQYFDEMTEK-DLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACA 325
           A   F ++  + +++ WN +I G+ ++G  E  L ++S  K+E       +FT    AC+
Sbjct: 601 AWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACS 660

Query: 326 TLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTS 385
               L  G+QVH  +++     +  +  +L+ MYAK G++ D++K+F ++ D+++    +
Sbjct: 661 HGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNA 720

Query: 386 MMIGYGAHGHGKEAIELFDEMVKSGVRP-DRIVFMAVLTACSHAGLVDEGLKYFKSMNDY 444
           M+  +  +G   +A+ L+++M K+G  P D     ++L+ CS  G  D G      +   
Sbjct: 721 MISAFIGNGRAYDALGLYNKM-KAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKR 779

Query: 445 NVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL-GACKEHRLPN 499
           ++  N  I   ++ +  + G  ++A  +  +M  + D   WG ++ G C+  R  +
Sbjct: 780 SMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKER-DVVAWGSMIAGFCQNRRFKD 834


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 193/578 (33%), Positives = 315/578 (54%), Gaps = 34/578 (5%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           A ++F+ + E +++ W  M  G+        A  ++V M+   + PN++T   +LK+C  
Sbjct: 16  AISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAK 75

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA-----------------------TCC 161
           +K+      +HG  +K G E  +YV  SL+ +Y                        T  
Sbjct: 76  LKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTAL 135

Query: 162 IS-------MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP 214
           ++       +++AR +F+++  K+ VSW  +I+GY  +GN    L +FKEM+   V  + 
Sbjct: 136 VTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDE 195

Query: 215 YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE 274
            +    + A A +G +  G+ +H+ +  HGFGSNL ++N+++D Y +   +  A   F  
Sbjct: 196 STMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLG 255

Query: 275 MTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG 333
           ++ KD+I+WN +I GY       E L +F +M     SPN  T  SI+ ACA L A+  G
Sbjct: 256 LSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIG 315

Query: 334 QQVHAGIVRR--GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG 391
           + +H  I +R  G+    +L  +LIDMY+KCG+I  + ++F+ M  + L  W +M+ G+ 
Sbjct: 316 RWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFA 375

Query: 392 AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNK 450
            HG    A ++F  M K+ ++PD I F+ +L+ACSHAG++D G   F+SM ++Y + P  
Sbjct: 376 MHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKL 435

Query: 451 EIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD 510
           E YGC++DLLG +G  KEA E+I +M  +PD  +W  LL ACK H    LG+  A  +  
Sbjct: 436 EHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEKFAQNLFK 495

Query: 511 LKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDK 570
           ++PN  G+Y++LSNIYA  G+W E A+ R ++   G KK  G S IE+   V  FI  DK
Sbjct: 496 IEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEIDSVVHEFIIGDK 555

Query: 571 MGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
                + +YG+LE +   + E  + PD   ++ ++E E
Sbjct: 556 FHPRNREIYGMLEEMEVLLQEAGFVPDTSEVLQEMEEE 593



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 124/463 (26%), Positives = 217/463 (46%), Gaps = 41/463 (8%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T L+  Y   G IE AR +FDE+P +DVVSW  MI+GY     + +A  +F EM++  V 
Sbjct: 133 TALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVR 192

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P+  T+ +V+ A     S+     VH      G   ++ + N+L+D Y+ C   M+ A  
Sbjct: 193 PDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCG-EMETACG 251

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           +F  + +K+ +SW  LI GY H       L +F+EML  G   N  +    + ACA  G 
Sbjct: 252 LFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGA 311

Query: 230 VSFGKLIHAAVIKH--GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
           +  G+ IH  + K   G  +   +  S++DMY +   +  A+Q F+ M  K L  WN +I
Sbjct: 312 IDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMI 371

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-GL 345
            G+   G ++   ++FS+M+     P+  TF  +++AC+    L  G+ +   +     +
Sbjct: 372 FGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKI 431

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEAIELFD 404
              L     +ID+    G   +++++ S M+ + D V W S++     HG+    +EL +
Sbjct: 432 TPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGN----VELGE 487

Query: 405 EMVKSGVR-----PDRIVFMAVLTACS---------HAGLVDEGLKYFKSMNDYNVNP-- 448
           +  ++  +     P   V ++ + A +            L D+G+K     +   ++   
Sbjct: 488 KFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEIDSVV 547

Query: 449 ------------NKEIYGCVVD---LLGRAGRVKEAYELIKSM 476
                       N+EIYG + +   LL  AG V +  E+++ M
Sbjct: 548 HEFIIGDKFHPRNREIYGMLEEMEVLLQEAGFVPDTSEVLQEM 590



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 126/263 (47%), Gaps = 33/263 (12%)

Query: 261 RFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTS 319
            F+ L  A   F+ + E +L+ WNT+  G+  S      L ++  M S    PN +TF  
Sbjct: 9   HFEGLPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPF 68

Query: 320 IIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD 379
           ++ +CA L A   G Q+H  +++ G + +L +  +LI MY +   + D+ K+F   S RD
Sbjct: 69  LLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRD 128

Query: 380 LVTWTSMMIGYGAHGH-------------------------------GKEAIELFDEMVK 408
           +V++T+++ GY + G+                                KEA+ELF EM+K
Sbjct: 129 VVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMK 188

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKE 468
           + VRPD    + V++A + +G ++ G +    + D+    N +I   ++D   + G ++ 
Sbjct: 189 TNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMET 248

Query: 469 AYELIKSMPFKPDESVWGPLLGA 491
           A  L   + +K D   W  L+G 
Sbjct: 249 ACGLFLGLSYK-DVISWNILIGG 270



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 78/188 (41%), Gaps = 10/188 (5%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S L T+LI  Y   G IE A  +F+ M  + + +W  MI G+      N A+ +F  M +
Sbjct: 333 SSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRK 392

Query: 106 NEVNPNAFTLSSVLKACK--GMKSLSN---AALVHGMAIKEGLEGSIYVENSLMDVYATC 160
           NE+ P+  T   +L AC   GM  L      ++ H   I   LE        ++D+    
Sbjct: 393 NEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHY----GCMIDLLGHS 448

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
            +  +   ++       + V W +L+      GN   G   F + L +    NP S+ + 
Sbjct: 449 GLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELG-EKFAQNLFKIEPNNPGSYVLL 507

Query: 221 VRACASTG 228
               A+ G
Sbjct: 508 SNIYATAG 515


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 178/494 (36%), Positives = 303/494 (61%), Gaps = 4/494 (0%)

Query: 117 SVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW 176
           + + AC   ++L     VH   I      ++++   L+ +Y  C  ++D+AR V + M  
Sbjct: 47  AAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCG-ALDDARNVLDRMPE 105

Query: 177 KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLI 236
           ++ VSWTT+I+GY+ +      L +F +ML  G   N Y+ +  + +C+    +  GK +
Sbjct: 106 RSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQV 165

Query: 237 HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-S 295
           H+ ++K  F S++ V +S+LDMY + + + +A + FD + E+D+++   II+GY + G  
Sbjct: 166 HSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLD 225

Query: 296 SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
            E L++F ++ SE    N  TFT+++ A + LA+L  G+QVHA I+R+ L   +AL N+L
Sbjct: 226 EEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSL 285

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           IDMY+KCG +  S+++F  M +R +V+W +M++GYG HG G E I LF ++ K  V+PD 
Sbjct: 286 IDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDS 344

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
           +  +AVL+ CSH GLVDEGL  F ++  + +   +   YGC++DLLGR+GR+++A  LI+
Sbjct: 345 VTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIE 404

Query: 475 SMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEE 534
           +MPF+   S+WG LLGAC+ H   ++G+L A ++L+++P   G Y+ILSNIYAA G W++
Sbjct: 405 NMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKD 464

Query: 535 FAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAY 594
             K RK+M      KE G SWI +   +  F ++++     + +   ++ +   +    +
Sbjct: 465 VFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGF 524

Query: 595 EPDIDCLIHDLEGE 608
            PD+ C++HD++ E
Sbjct: 525 VPDLSCVLHDVDDE 538



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 172/304 (56%), Gaps = 15/304 (4%)

Query: 45  PSI-LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           P++ L T L+  Y   G +++AR + D MPER VVSWT MI+GY+    H +A  +F++M
Sbjct: 75  PAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKM 134

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           +R    PN +TL++VL +C G +S+     VH + +K   E  ++V +SL+D+YA    +
Sbjct: 135 LRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAK-SEN 193

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +  AR VF+ +  ++ VS T +I+GYA  G     L +F+++  EG++ N  +F+  V A
Sbjct: 194 IQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTA 253

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
            +    + +GK +HA +++      + + NS++DMY +   L  + + FD M E+ +++W
Sbjct: 254 LSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSW 313

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N ++ GY + G   E +++F  +  E   P+  T  ++++ C+           H G+V 
Sbjct: 314 NAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCS-----------HGGLVD 361

Query: 343 RGLD 346
            GLD
Sbjct: 362 EGLD 365



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 130/231 (56%), Gaps = 1/231 (0%)

Query: 205 MLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264
           M L G     + +  A+ AC     +  G+ +HA +I   +   + +   ++ MY R   
Sbjct: 33  MALPGASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGA 92

Query: 265 LSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAA 323
           L DA    D M E+ +++W T+I+GY ++    E L++F KM      PN +T  +++ +
Sbjct: 93  LDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTS 152

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTW 383
           C+   ++  G+QVH+ +V+   + ++ + ++L+DMYAK  NI +++++F  + +RD+V+ 
Sbjct: 153 CSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSC 212

Query: 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434
           T+++ GY   G  +EA++LF ++   G++ + + F  ++TA S    +D G
Sbjct: 213 TAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYG 263



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 84/161 (52%)

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           + + I AC    AL  G+QVHA ++       + L   L+ MY +CG + D++ +   M 
Sbjct: 45  YEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMP 104

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
           +R +V+WT+M+ GY       EA++LF +M+++G  P+      VLT+CS    + +G +
Sbjct: 105 ERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQ 164

Query: 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMP 477
               +   N   +  +   ++D+  ++  ++EA  +  ++P
Sbjct: 165 VHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLP 205


>gi|357468777|ref|XP_003604673.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
 gi|355505728|gb|AES86870.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
          Length = 838

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 191/560 (34%), Positives = 311/560 (55%), Gaps = 5/560 (0%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   + + LI  Y   G + +A  +F E P+ DVV WT +I+GY        A   F  M
Sbjct: 275 GDMFVGSALIDLYTKCGQMNDAVKVFMEYPKPDVVLWTSIISGYEQSGSPELALAFFSRM 334

Query: 104 VRNE-VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           V +E V+P+  TL SV  AC  + +      VHG   ++GL+  + + NSL+ +Y     
Sbjct: 335 VVSEKVSPDPVTLVSVASACAQLSNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKTG- 393

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
           S+ NA  +F +M  K+ +SW+T++  YA +G     L +F EML + ++ N  +    +R
Sbjct: 394 SIKNASNLFREMSDKDIISWSTMVACYADNGAETDVLDLFNEMLDKRIKPNWVTVVSVLR 453

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           ACA    +  G  IH   + +GF     V  +++DMY +      A   F+ M +KD+I 
Sbjct: 454 ACACISNLEEGMKIHELAVNYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMPKKDVIA 513

Query: 283 WNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           W  + +GY  +G   E + +F  M S    P+      I+   + L  L     +HA ++
Sbjct: 514 WAVLFSGYADNGMVHESMWVFRNMLSSGTRPDAIALVKILTTISELGILQQAVCLHAFVI 573

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           + G + N  +  +LI++YAKC +I D+ K+F  M+ +D+VTW+S++  YG HG G+EA++
Sbjct: 574 KNGFENNQFIGASLIEVYAKCSSIEDANKVFKGMTYKDVVTWSSIIAAYGFHGQGEEALK 633

Query: 402 LFDEMVK-SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDL 459
           LF +M   S  +P+ + F+++L+ACSH+GL+ EG+  F  M N Y + PN E Y  +VDL
Sbjct: 634 LFYQMANHSDTKPNNVTFISILSACSHSGLIKEGINMFDIMVNKYKLKPNSEHYAIMVDL 693

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
           LGR G +  A ++I +MP +    +WG LLGAC+ H+   +G++AA  +  L PN  G Y
Sbjct: 694 LGRMGELDMALDVINNMPMQAGPDIWGALLGACRIHQNIKMGEVAAKNLFSLDPNHAGYY 753

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVY 579
           I+LSNIY+ +  W    K R++++     K VG S +E++++V  FIA D++   + ++Y
Sbjct: 754 ILLSNIYSVDENWHSATKLRRLVKEKRLNKIVGQSVVELKNEVRSFIAGDRIHDESDHIY 813

Query: 580 GVLEMLIRHMNETAYEPDID 599
            +L  L   M E A++P + 
Sbjct: 814 EILTKLHAKMREVAFDPQVQ 833



 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 130/461 (28%), Positives = 235/461 (50%), Gaps = 17/461 (3%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S + T L   Y     I  A  LF E P R V  W  ++  Y    C    W   + + R
Sbjct: 171 SFIVTKLNVLYARYASIHHAHKLFQETPHRTVYLWNALLRSY----CFEGEWVETLSLFR 226

Query: 106 N---------EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDV 156
                     E  P+ +++S  LK+C G++ L    ++HG   K  ++G ++V ++L+D+
Sbjct: 227 QMNNVSSVSIEERPDNYSVSIALKSCAGLRKLLLGKVIHGFLKKVRIDGDMFVGSALIDL 286

Query: 157 YATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLL-EGVEMNPY 215
           Y T C  M++A  VF +    + V WT++I+GY  SG+    L  F  M++ E V  +P 
Sbjct: 287 Y-TKCGQMNDAVKVFMEYPKPDVVLWTSIISGYEQSGSPELALAFFSRMVVSEKVSPDPV 345

Query: 216 SFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM 275
           +      ACA       G+ +H  V + G  + L + NS+L +Y +   + +A+  F EM
Sbjct: 346 TLVSVASACAQLSNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNASNLFREM 405

Query: 276 TEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334
           ++KD+I+W+T++A Y  +G+ ++ L++F++M  +R  PN  T  S++ ACA ++ L  G 
Sbjct: 406 SDKDIISWSTMVACYADNGAETDVLDLFNEMLDKRIKPNWVTVVSVLRACACISNLEEGM 465

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
           ++H   V  G +    ++ AL+DMY KC +   +  +F+ M  +D++ W  +  GY  +G
Sbjct: 466 KIHELAVNYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMPKKDVIAWAVLFSGYADNG 525

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG 454
              E++ +F  M+ SG RPD I  + +LT  S  G++ + +     +       N+ I  
Sbjct: 526 MVHESMWVFRNMLSSGTRPDAIALVKILTTISELGILQQAVCLHAFVIKNGFENNQFIGA 585

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            ++++  +   +++A ++ K M +K D   W  ++ A   H
Sbjct: 586 SLIEVYAKCSSIEDANKVFKGMTYK-DVVTWSSIIAAYGFH 625



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 116/382 (30%), Positives = 206/382 (53%), Gaps = 12/382 (3%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM 174
           L  +L+ C    S+S    +H   +K GL    ++   L  +YA    S+ +A  +F + 
Sbjct: 142 LVKLLETCCSKLSISQ---LHSQCLKAGLVHDSFIVTKLNVLYARYA-SIHHAHKLFQET 197

Query: 175 KWKNDVSWTTLITGYAHSGNGYGGLGVFKEM---LLEGVEMNP--YSFSIAVRACASTGW 229
             +    W  L+  Y   G     L +F++M       +E  P  YS SIA+++CA    
Sbjct: 198 PHRTVYLWNALLRSYCFEGEWVETLSLFRQMNNVSSVSIEERPDNYSVSIALKSCAGLRK 257

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           +  GK+IH  + K     ++ V ++++D+Y +   ++DA + F E  + D++ W +II+G
Sbjct: 258 LLLGKVIHGFLKKVRIDGDMFVGSALIDLYTKCGQMNDAVKVFMEYPKPDVVLWTSIISG 317

Query: 290 YEKSGSSE-CLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           YE+SGS E  L  FS+M  SE+ SP+  T  S+ +ACA L+    G+ VH  + R+GLD 
Sbjct: 318 YEQSGSPELALAFFSRMVVSEKVSPDPVTLVSVASACAQLSNFKLGRSVHGFVKRKGLDN 377

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
            L LAN+L+ +Y K G+I ++  +F EMSD+D+++W++M+  Y  +G   + ++LF+EM+
Sbjct: 378 KLCLANSLLHLYGKTGSIKNASNLFREMSDKDIISWSTMVACYADNGAETDVLDLFNEML 437

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
              ++P+ +  ++VL AC+    ++EG+K  +   +Y       +   ++D+  +    +
Sbjct: 438 DKRIKPNWVTVVSVLRACACISNLEEGMKIHELAVNYGFEMETTVSTALMDMYMKCFSPE 497

Query: 468 EAYELIKSMPFKPDESVWGPLL 489
           +A +L   MP K D   W  L 
Sbjct: 498 KAVDLFNRMP-KKDVIAWAVLF 518


>gi|225432410|ref|XP_002276935.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
           mitochondrial-like [Vitis vinifera]
          Length = 623

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 198/592 (33%), Positives = 307/592 (51%), Gaps = 67/592 (11%)

Query: 60  GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119
           G I  AR LFDEMP +D V+W  M+A Y+    H QA  +F  M      P+ FT ++ L
Sbjct: 19  GRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMRIANSRPDRFTFTATL 78

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179
            AC G+  L     +H   +  G + S+ V NSL+D+Y  C +S  +AR VF +M   N+
Sbjct: 79  SACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKC-LSATSARRVFEEMSIMNE 137

Query: 180 VSWTTLITGYAHSG------------------------NGYGG-------LGVFKEMLLE 208
           VSW +L+  Y  SG                        +GYG        LG+FK+M  +
Sbjct: 138 VSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCGDVELCLGLFKKMRED 197

Query: 209 GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDA 268
            ++ + ++FS  V A       S+G ++H  +IK G+   + V NSIL  Y +  C  D 
Sbjct: 198 SLQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWVKAVEVSNSILSFYSKLGCKDDV 257

Query: 269 NQYFDEM-------------------------------TEKDLITWNTIIAGYEKSGSSE 297
            + F+ +                                EK++++W ++I GY ++G  E
Sbjct: 258 MKVFESIGILTQVSWNAMIDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGE 317

Query: 298 -CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALI 356
             L+ F KM      P+ FTF +++ AC++LA L  G+ +H  I+  G    + + N L+
Sbjct: 318 QALSFFVKMMENHIQPDDFTFGAVLHACSSLATLGHGKMIHGSIIHYGFHAYVDVGNGLV 377

Query: 357 DMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI 416
           +MYAKCG+I  S   F E+  +DLV+W +M+ G G HGH  +A+EL++EMV SG++PD++
Sbjct: 378 NMYAKCGDIQGSNTAFKEILGKDLVSWNAMLFGLGMHGHATQALELYEEMVASGMKPDKV 437

Query: 417 VFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK- 474
            F+ +L  CSH+GL+++G   F+SM + Y ++   E   C+VDLLGR G + +A EL+  
Sbjct: 438 TFIGLLMTCSHSGLIEKGQALFESMVSVYGLSQETEHVVCMVDLLGRGGYLAQARELVDE 497

Query: 475 -SMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWE 533
            S   + + S+   LLGAC  H    +G      +   +P    +Y++LSN+Y   G+W+
Sbjct: 498 YSRTGRAETSLPEALLGACFAHSEVRMGANLGEYLKVFEPQKEMSYVLLSNLYCVSGQWK 557

Query: 534 EFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           E    RK M   G KK  G SWIEVR+KV  F+A +    + + +  +L  L
Sbjct: 558 EAEMVRKTMTDHGVKKMPGCSWIEVRNKVTVFVAGNHSHPYMEELCKILNFL 609



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 119/458 (25%), Positives = 219/458 (47%), Gaps = 65/458 (14%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
           +L+ +Y   GL + AR +FD MP++  ++W +MI+GY           +F +M  + + P
Sbjct: 142 SLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCGDVELCLGLFKKMREDSLQP 201

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD----- 165
           + +T S+++ A   ++  S   ++HG  IK G   ++ V NS++  Y+      D     
Sbjct: 202 DQWTFSALVNALCELQEPSYGYMMHGFIIKSGWVKAVEVSNSILSFYSKLGCKDDVMKVF 261

Query: 166 -------------------------NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLG 200
                                     A LVF     KN VSWT++ITGYA +G+G   L 
Sbjct: 262 ESIGILTQVSWNAMIDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGEQALS 321

Query: 201 VFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYC 260
            F +M+   ++ + ++F   + AC+S   +  GK+IH ++I +GF + + V N +++MY 
Sbjct: 322 FFVKMMENHIQPDDFTFGAVLHACSSLATLGHGKMIHGSIIHYGFHAYVDVGNGLVNMYA 381

Query: 261 RFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTS 319
           +   +  +N  F E+  KDL++WN ++ G    G +++ L ++ +M +    P+  TF  
Sbjct: 382 KCGDIQGSNTAFKEILGKDLVSWNAMLFGLGMHGHATQALELYEEMVASGMKPDKVTFIG 441

Query: 320 IIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD 379
           ++  C+           H+G++ +G     AL  +++ +Y     +S   +    M D  
Sbjct: 442 LLMTCS-----------HSGLIEKG----QALFESMVSVYG----LSQETEHVVCMVD-- 480

Query: 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439
                  ++G G  G+  +A EL DE  ++G R +  +  A+L AC     V  G    +
Sbjct: 481 -------LLGRG--GYLAQARELVDEYSRTG-RAETSLPEALLGACFAHSEVRMGANLGE 530

Query: 440 SMNDYNVNPNKEI-YGCVVDLLGRAGRVKEAYELIKSM 476
            +  +   P KE+ Y  + +L   +G+ KEA  + K+M
Sbjct: 531 YLKVF--EPQKEMSYVLLSNLYCVSGQWKEAEMVRKTM 566



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 1/132 (0%)

Query: 360 AKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFM 419
           AK G I+ ++++F EM  +D V W +M+  Y   G  ++A+ LF  M  +  RPDR  F 
Sbjct: 16  AKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMRIANSRPDRFTFT 75

Query: 420 AVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
           A L+AC+  G +  G+K    +       +  +   ++D+ G+      A  + + M   
Sbjct: 76  ATLSACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLSATSARRVFEEMSIM 135

Query: 480 PDESVWGPLLGA 491
            +E  W  LL A
Sbjct: 136 -NEVSWCSLLFA 146



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 36/75 (48%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +   L+  Y   G I+ + T F E+  +D+VSW  M+ G        QA  ++ EMV + 
Sbjct: 372 VGNGLVNMYAKCGDIQGSNTAFKEILGKDLVSWNAMLFGLGMHGHATQALELYEEMVASG 431

Query: 108 VNPNAFTLSSVLKAC 122
           + P+  T   +L  C
Sbjct: 432 MKPDKVTFIGLLMTC 446


>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
          Length = 1753

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 203/633 (32%), Positives = 330/633 (52%), Gaps = 80/633 (12%)

Query: 46   SILATNLIKSYFDEGLIEEARTLFDEMPER---DVVSWTVMIAGYTSFNCHNQAWTVFVE 102
            + LA  ++  Y   GL+ +A+ +F+  P     +++ W  ++    +     +A  ++  
Sbjct: 904  AFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCR 963

Query: 103  MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
            M +  V+ + FT   V++AC  M S      VHG  ++ G + +++V N LM +Y     
Sbjct: 964  MRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIG- 1022

Query: 163  SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFS---- 218
             MD+AR VF  M  ++ VSW T+++GYA + + +G   +F+ M   G+E N  +++    
Sbjct: 1023 RMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLS 1082

Query: 219  -----------------------------IAVRACASTGWVSF--GKLIHAAVIKHGFGS 247
                                         +AV    S    +F  GK+IH  V+K GF +
Sbjct: 1083 SHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFEN 1142

Query: 248  NLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY----------------- 290
             L V NS++ +Y +   ++ A   F E+  K++++WN +I+ Y                 
Sbjct: 1143 YLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLE 1202

Query: 291  -----------------------EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATL 327
                                    K    E L +F +M+  +   N  T  S+++ CA L
Sbjct: 1203 KTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAEL 1262

Query: 328  AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMM 387
            AAL  G+++H  +VR  +DGN+ + N LI+MY K G+  +   +F ++ ++DL++W +M+
Sbjct: 1263 AALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMV 1322

Query: 388  IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNV 446
             GYG HG G+ AI  FD+M+K G  PD + F+AVL+ACSHAGLV EG + F  M  ++ V
Sbjct: 1323 AGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRV 1382

Query: 447  NPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAAL 506
             P  E Y C+VDLLGRAG ++EA +++KSMP +P+  VWG LL +C+ H+   + +  A 
Sbjct: 1383 EPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETAS 1442

Query: 507  RVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFI 566
            ++ +L   + G+Y++LSNIYAA G+WE+ AK R   +  G KK  G SWI+V+ KV  F 
Sbjct: 1443 QIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKKVYMFS 1502

Query: 567  ANDKMGSHTQYVYGVLEMLIRHMNETAYEPDID 599
            A +   +  + VY +L+ L   M    Y PDID
Sbjct: 1503 AGNTQHAELEEVYRILKDLGLQMEVEGYIPDID 1535



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 170/372 (45%), Gaps = 50/372 (13%)

Query: 134  VHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMK---WKNDVSWTTLITGYA 190
            +H   I  G   S ++   ++ VYA   +  D  R VF       + N + W +++    
Sbjct: 891  IHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQR-VFEVSPIECFSNLLLWNSILRANV 949

Query: 191  HSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLP 250
              G     L ++  M   GV  + ++F + +RACA  G     + +H  V++ GF  NL 
Sbjct: 950  AHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLH 1009

Query: 251  VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS----GSSECLNMFSKMK 306
            V N ++ MY +   + DA + F+ M  +  ++WNT+++GY  +    G+SE   MF  M 
Sbjct: 1010 VGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASE---MFRMMG 1066

Query: 307  SERFSPNCFTFTSIIAACAT-----------------------------------LAALS 331
            S    PN  T+TS++++ A                                    LAA  
Sbjct: 1067 SAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFD 1126

Query: 332  CGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG 391
             G+ +H  +V+ G +  L + N+LI +Y K GN++ ++ +F E+  +++V+W +++  Y 
Sbjct: 1127 EGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYA 1186

Query: 392  AHGHGKEAIELFDEMVKSG----VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN 447
              G   EA  +F ++ K+     VRP+ + + AV+   +  G  +E L+ F+ M    V 
Sbjct: 1187 DLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVK 1246

Query: 448  PNKEIYGCVVDL 459
             N      V+ +
Sbjct: 1247 ANSVTIASVLSV 1258



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 119/246 (48%), Gaps = 53/246 (21%)

Query: 334  QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD----RDLVTWTSMMIG 389
            QQ+H+ I+  G   +  LA  ++ +YA  G +SD+Q++F E+S      +L+ W S++  
Sbjct: 889  QQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVF-EVSPIECFSNLLLWNSILRA 947

Query: 390  YGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS-----------HAGLVDEGLKYF 438
              AHG+ +EA+E++  M K GV  D   F  V+ AC+           H  +V+ G +  
Sbjct: 948  NVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQ-- 1005

Query: 439  KSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL--------- 489
                 +N++   E+ G    + G+ GR+ +A ++ + M  +   S W  ++         
Sbjct: 1006 -----WNLHVGNELMG----MYGKIGRMDDARKVFERMAVRSCVS-WNTMVSGYALNYDC 1055

Query: 490  -GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK----WEEFAKFRKIMRG 544
             GA +  R+  +G         L+PN++ T+  L + +A  G+     E F + R  MRG
Sbjct: 1056 HGASEMFRM--MGSAG------LEPNLV-TWTSLLSSHARCGQHVETMELFGRMR--MRG 1104

Query: 545  MGSKKE 550
            +G+  E
Sbjct: 1105 IGATAE 1110


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 186/546 (34%), Positives = 309/546 (56%), Gaps = 26/546 (4%)

Query: 88  TSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSI 147
           ++F  H       ++M  +  N      +++L  C   ++      VH   IK     S+
Sbjct: 219 STFTTHIHLQQPLLQMALHGFNMKFENYNAILNECVNKRAFREGQRVHAHMIKTRYLPSV 278

Query: 148 YVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVF---KE 204
           ++   L+ +Y T C S+ +A  VF++M  +N VSWT +I+ Y+  G     L +F    +
Sbjct: 279 FLRTRLIVLY-TKCDSLGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQALNLFFADVK 337

Query: 205 MLLEGV------------------EMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFG 246
           + L GV                  E N ++F+  + +C S+     G+ IH+ +IK  + 
Sbjct: 338 ISLTGVYAIDKLKLSNPNRPWVCTEPNEFTFATVLTSCTSSLGFILGRQIHSLIIKLNYE 397

Query: 247 SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKM 305
            ++ V +S+LDMY +   + +A   F+ + E+D+++   II+GY + G   E L +F ++
Sbjct: 398 DHVFVGSSLLDMYAKDGKIHEARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRL 457

Query: 306 KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNI 365
           + E    N  T+T ++ A + LAAL  G+QVH  ++R  +   + L N+LIDMY+KCGN+
Sbjct: 458 QGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNL 517

Query: 366 SDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK-SGVRPDRIVFMAVLTA 424
           + S++IF  M +R +++W +M++GY  HG G+E ++LF  M + + V+PD +  +AVL+ 
Sbjct: 518 TYSRRIFDTMYERTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSG 577

Query: 425 CSHAGLVDEGLKYFKSMND--YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDE 482
           CSH GL D+GL  F  M+     V P  E YGCVVDLLGR+GRV+EA+E IK MPF+P  
Sbjct: 578 CSHGGLEDKGLNIFNDMSSGKIEVEPKMEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTA 637

Query: 483 SVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIM 542
           ++WG LLGAC+ H   ++G+ A  ++L+++P   G Y+ILSN+YA+ G+WE+ +  R +M
Sbjct: 638 AIWGSLLGACRVHSNVDIGEFAGQQLLEIEPGNAGNYVILSNLYASAGRWEDVSSLRDLM 697

Query: 543 RGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLI 602
                 KE G S IE+   +  F A+D+     + +   ++ L     E  Y PD+ C++
Sbjct: 698 LKKTVTKEPGRSSIELDQVLHTFHASDRSHPRREEICMKVKELSTSFKEVGYVPDLSCVL 757

Query: 603 HDLEGE 608
           HD++ E
Sbjct: 758 HDVDEE 763



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 98/184 (53%), Gaps = 4/184 (2%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + ++L+  Y  +G I EART+F+ +PERDVVS T +I+GY       +A  +F  +   
Sbjct: 401 FVGSSLLDMYAKDGKIHEARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGE 460

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            +  N  T + VL A  G+ +L     VH   ++  +   + ++NSL+D+Y+ C  ++  
Sbjct: 461 GMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCG-NLTY 519

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI--AVRAC 224
           +R +F+ M  +  +SW  ++ GY+  G G   L +F  ++ E  ++ P S +I   +  C
Sbjct: 520 SRRIFDTMYERTVISWNAMLVGYSKHGEGREVLKLFT-LMREETKVKPDSVTILAVLSGC 578

Query: 225 ASTG 228
           +  G
Sbjct: 579 SHGG 582


>gi|108712052|gb|ABF99847.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1221

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 187/552 (33%), Positives = 314/552 (56%), Gaps = 12/552 (2%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G + + + LI+ Y   G +  A+ +FD M   DVV +T +I+ +        A    ++M
Sbjct: 74  GDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQM 133

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKE-GLEG-SIYVENSLMDVYATCC 161
           ++  + PN  T++++L AC  +        +HG  IK+ GL   S+Y   +L+D Y+   
Sbjct: 134 LKQGLKPNEHTMTTILTACPRVL----GQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNG 189

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
                A+ VF+ +  KN VSW +++  Y   G     L VF +M+ EGV+ N ++ SI +
Sbjct: 190 -EFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVL 248

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
            AC S G    G+ +H + IKH   +++ V N++L MY R   + +     +++   DL+
Sbjct: 249 GACGSIG---LGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLV 305

Query: 282 TWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           +W T I+   ++G  E  + +  +M SE F+PN + F+S++++CA +A+L  G Q H   
Sbjct: 306 SWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLA 365

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           ++ G D  +   NALI+MY+KCG +  ++  F  M   D+ +W S++ G+  HG   +A+
Sbjct: 366 LKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKAL 425

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDL 459
           E+F +M  +G++PD   F+ VL  C+H+G+V+EG  +F+ M D Y+  P    Y C++D+
Sbjct: 426 EVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDM 485

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
           LGR GR  EA  +I  MPF+PD  +W  LL +CK HR  ++GKLAA R+++L      +Y
Sbjct: 486 LGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSASY 545

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVY 579
           +++SNIYA  G+WE+  K R+ M   G KK+ G SWIE+ ++V  F + D    ++  +Y
Sbjct: 546 VLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIEINNEVHTFASRDMSHPNSDSIY 605

Query: 580 GVLEMLIRHMNE 591
            +L  L+  M +
Sbjct: 606 QMLGELVAVMQD 617



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 120/471 (25%), Positives = 229/471 (48%), Gaps = 49/471 (10%)

Query: 72  MPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNA 131
           MP ++VV+WT +++GYT       A  +F +MV + V PN F  ++ L AC  + +L   
Sbjct: 1   MPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAG 60

Query: 132 ALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAH 191
             VH +A++ G  G  ++ + L+++Y+ C  S+  A+ VF+ M   + V +T+LI+ +  
Sbjct: 61  EQVHSLAVRAGFAGDAWIGSCLIEMYSRCG-SLPAAKEVFDRMDSPDVVGYTSLISAFCR 119

Query: 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251
           +G          +ML +G++ N ++ +  + AC        G+ IH  +IK     +  V
Sbjct: 120 NGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRV----LGQQIHGYLIKKIGLRSQSV 175

Query: 252 MNS--ILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSE 308
            +S  ++D Y R      A   FD +  K++++W +++  Y + G   E L +F  M SE
Sbjct: 176 YSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISE 235

Query: 309 RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDS 368
              PN F  + ++ AC ++     G+Q+H   ++  L  ++ ++NAL+ MY + G + + 
Sbjct: 236 GVDPNEFALSIVLGACGSIG---LGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEEL 292

Query: 369 QKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHA 428
           + + +++ + DLV+WT+ +     +G G++AI L  +M   G  P+   F +VL++C+  
Sbjct: 293 EAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADV 352

Query: 429 GLVDEGLKY-----------------------------------FKSMNDYNVNP-NKEI 452
             +D+G+++                                   F  M+ ++V   N  I
Sbjct: 353 ASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLI 412

Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKL 503
           +G      G A +  E +  ++S   KPD+S +  +L  C    +   G+L
Sbjct: 413 HGHAQH--GDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGEL 461


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 187/563 (33%), Positives = 310/563 (55%), Gaps = 9/563 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           IL  +L+  Y   G +E+A+ LF+ M  R V SW  MIA Y       +A  ++ +M   
Sbjct: 158 ILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDM--- 214

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMD 165
           +V P+  T +SVL AC  +  L     +H +    G E  + ++N+L+ +YA C C  +D
Sbjct: 215 DVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKC--LD 272

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +A  +F  +  ++ VSW+ +I  +A +      +  + +M LEGV  N Y+F+  + ACA
Sbjct: 273 DAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACA 332

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           S G +  G+ +H  ++ +G+   L    +++D+Y  +  L +A   FD++  +D   W  
Sbjct: 333 SVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTV 392

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNC-FTFTSIIAACATLAALSCGQQVHAGIVRR 343
           +I GY K G  +  L ++ +MK+    P     ++ +I+ACA+L A +  +Q H+ I   
Sbjct: 393 LIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEAD 452

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G+  +  LA +L++MY++ GN+  ++++F +MS RD + WT+++ GY  HG    A+ L+
Sbjct: 453 GMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLY 512

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGR 462
            EM   G  P  + FM VL ACSHAGL ++G + F S+ +DY ++PN   Y C++DLL R
Sbjct: 513 KEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSR 572

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AGR+ +A ELI +MP +P++  W  LLGA + H+       AA ++  L P    +Y++L
Sbjct: 573 AGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLL 632

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           SN++A  G     A  R  M   G KK  G SWIEV D++  F   D      Q ++  L
Sbjct: 633 SNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAEL 692

Query: 583 EMLIRHMNETAYEPDIDCLIHDL 605
           + L   + E  Y P+ + ++HD+
Sbjct: 693 QRLSPKIKEAGYVPESEEVLHDV 715



 Score =  219 bits (558), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 128/475 (26%), Positives = 242/475 (50%), Gaps = 13/475 (2%)

Query: 24  QSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVM 83
           Q L+SV++  I             L   ++++Y   G +  AR  FD +  ++  SW  M
Sbjct: 38  QDLESVRQ--IHDRISGAASANVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSM 95

Query: 84  IAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHG-MAIKEG 142
           +  Y     +  A  ++  M   ++ PN    ++VL AC  +K+L     +H  ++  +G
Sbjct: 96  LTAYAQNGHYRAALDLYKRM---DLQPNPVVYTTVLGACASIKALEEGKAIHSRISGTKG 152

Query: 143 LEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVF 202
           L+  + +ENSL+ +YA C  S+++A+ +F  M  ++  SW  +I  YA SG+    + ++
Sbjct: 153 LKLDVILENSLLTMYAKCG-SLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLY 211

Query: 203 KEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRF 262
           ++M    VE +  +F+  + AC++ G +  G+ IHA +   G   +L + N++L MY R 
Sbjct: 212 EDM---DVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARC 268

Query: 263 DCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSII 321
            CL DA + F  +  +D+++W+ +IA + E     E +  +SKM+ E   PN +TF S++
Sbjct: 269 KCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVL 328

Query: 322 AACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLV 381
            ACA++  L  G+ VH  I+  G    L    AL+D+Y   G++ +++ +F ++ +RD  
Sbjct: 329 LACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEG 388

Query: 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP-DRIVFMAVLTACSHAGLVDEGLKYFKS 440
            WT ++ GY   GH    +EL+ EM  +   P  +I++  V++AC+  G   +  +    
Sbjct: 389 LWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSD 448

Query: 441 MNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           +    +  +  +   +V++  R G ++ A ++   M  + D   W  L+    +H
Sbjct: 449 IEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSR-DTLAWTTLIAGYAKH 502



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 132/428 (30%), Positives = 220/428 (51%), Gaps = 23/428 (5%)

Query: 119 LKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKN 178
           L+ C+ ++S+     +H   I      ++++ N ++  Y  C  S+ +AR  F+ +  KN
Sbjct: 34  LRQCQDLESVRQ---IHDR-ISGAASANVFLGNEIVRAYGKCG-SVASARAAFDAIARKN 88

Query: 179 DVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHA 238
           D SW +++T YA +G+    L ++K M L+    NP  ++  + ACAS   +  GK IH+
Sbjct: 89  DYSWGSMLTAYAQNGHYRAALDLYKRMDLQP---NPVVYTTVLGACASIKALEEGKAIHS 145

Query: 239 AVI-KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-S 296
            +    G   ++ + NS+L MY +   L DA + F+ M+ + + +WN +IA Y +SG   
Sbjct: 146 RISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFE 205

Query: 297 ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALI 356
           E + ++  M  E   P+  TFTS+++AC+ L  L  G+++HA I  RG + +L+L NAL+
Sbjct: 206 EAIRLYEDMDVE---PSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALL 262

Query: 357 DMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI 416
            MYA+C  + D+ KIF  +  RD+V+W++M+  +       EAIE + +M   GVRP+  
Sbjct: 263 TMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYY 322

Query: 417 VFMAVLTACSHAGLVDEGLKYFKSM--NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
            F +VL AC+  G +  G      +  N Y +         +VDL    G + EA  L  
Sbjct: 323 TFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGT--ALVDLYTSYGSLDEARSLFD 380

Query: 475 SMPFKPDESVWGPLLGACKE--HRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKW 532
            +  + DE +W  L+G   +  HR    G L   R +     +  T II S + +A    
Sbjct: 381 QIENR-DEGLWTVLIGGYSKQGHR---TGVLELYREMKNTTKVPATKIIYSCVISACASL 436

Query: 533 EEFAKFRK 540
             FA  R+
Sbjct: 437 GAFADARQ 444


>gi|218188593|gb|EEC71020.1| hypothetical protein OsI_02714 [Oryza sativa Indica Group]
          Length = 825

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 189/560 (33%), Positives = 316/560 (56%), Gaps = 8/560 (1%)

Query: 16  HKIPPIIKQSLQ-SVKKSSIQSDPPLIPKG---PSILATNLIKSYFDEGLIEEARTLFDE 71
           + +P ++K  ++  + KS       +I +G     +L   LI+ Y      E+A  +F  
Sbjct: 263 YTLPTVLKCCMELGLAKSGQAVHGLVIKRGLETDRVLNNCLIEMYSKCLSAEDAYEVFAR 322

Query: 72  MPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNA 131
           + E DVV  ++MI+ +   +   +A+ +F++M    V PN +T   +         ++  
Sbjct: 323 IDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDMGVKPNQYTFVGLAIVASRTGDVNLC 382

Query: 132 ALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAH 191
             +H   +K G   +  V ++++ +Y     ++ +A L F+ M+  +  SW TL++G+  
Sbjct: 383 RSIHAHIVKSGFSRTKGVCDAIVGMYVKTG-AVQDAILAFDLMQGPDIASWNTLLSGFYS 441

Query: 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251
             N   GL +FKE++ EGV  N Y++   +R C S   + FG  +HA V+K GF  +  V
Sbjct: 442 GNNCEHGLRIFKELICEGVLANKYTYVGILRCCTSLMDLRFGCQVHACVLKSGFQGDYDV 501

Query: 252 MNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERF 310
              +LDMY +  C ++A   FD + E+D+ +W  +++ Y K+   E  +  F  M  E  
Sbjct: 502 SKMLLDMYVQAGCFTNARLVFDRLKERDVFSWTVVMSTYAKTDEGEKAIECFRSMLRENK 561

Query: 311 SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQK 370
            PN  T  + ++ C+ LA L  G Q+H+  ++ G + ++ +++AL+DMY KCGN++D++ 
Sbjct: 562 RPNDATLATSLSVCSDLACLGSGLQLHSYTIKSGWNSSV-VSSALVDMYVKCGNLADAEM 620

Query: 371 IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           +F E    DLV W +++ GY  HGHG +A+E F EM+  G  PD I F+ VL+ACSHAGL
Sbjct: 621 LFDESDTHDLVEWNTIICGYAQHGHGYKALEAFQEMIDEGNVPDEITFVGVLSACSHAGL 680

Query: 431 VDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           +DEG +YFK ++  Y + P  E Y C+VD+L +AG++ EA  LI  MP  PD S+W  +L
Sbjct: 681 LDEGRRYFKLLSSVYGITPTLEHYACMVDILAKAGKLAEAESLINEMPLTPDASLWKTIL 740

Query: 490 GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKK 549
           GAC+ H    + + AA ++ + +P+ + + I+LSNIYA   +W + AK R ++   G KK
Sbjct: 741 GACRMHGNIEIAERAAEKLFESQPDDISSCILLSNIYADLKRWNDVAKLRSMLVDRGVKK 800

Query: 550 EVGMSWIEVRDKVCGFIAND 569
           E G SWIE+  K+  F++ D
Sbjct: 801 EPGCSWIEINGKLHVFLSQD 820



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 118/431 (27%), Positives = 218/431 (50%), Gaps = 15/431 (3%)

Query: 1   MRTKRLLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEG 60
           +R + L SYAA          +++  +++    ++S P    +  + L  +L+  Y   G
Sbjct: 55  LRAEELRSYAAALQGCAASRALRRG-KALHARLLRSGP----RPDAFLHDSLLNMYCKCG 109

Query: 61  LIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLK 120
            + +AR++FD MP RDVV+WT M++  T+      A  +F EM    V PN F L++ LK
Sbjct: 110 RLADARSVFDGMPHRDVVAWTAMVSAITAAGDAGAALRLFAEMSEEGVVPNGFALAAALK 169

Query: 121 ACKGMKSLSNAALVHGMAIKEGLEGSI--YVENSLMDVYATCCISMDNARLVFNDMKWKN 178
           AC     L     VH  A+K  LEG    YV +SL++ Y +C   +D A     D   ++
Sbjct: 170 ACTVGSDLGFTPQVHAQAVK--LEGLFDPYVSSSLVEAYVSCG-EVDVAERALLDSPVRS 226

Query: 179 DVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHA 238
           DVSW  L+  YA  G+    + VF +++  G E++ Y+    ++ C   G    G+ +H 
Sbjct: 227 DVSWNALLNEYARDGDYAKVMLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSGQAVHG 286

Query: 239 AVIKHGFGSNLPVMNSILDMYCRFDCLS--DANQYFDEMTEKDLITWNTIIAGYEKSG-S 295
            VIK G  ++  + N +++MY +  CLS  DA + F  + E D++  + +I+ +++   +
Sbjct: 287 LVIKRGLETDRVLNNCLIEMYSK--CLSAEDAYEVFARIDEPDVVHCSLMISCFDRHDMA 344

Query: 296 SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
            E  ++F +M      PN +TF  +    +    ++  + +HA IV+ G      + +A+
Sbjct: 345 PEAFDIFMQMSDMGVKPNQYTFVGLAIVASRTGDVNLCRSIHAHIVKSGFSRTKGVCDAI 404

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           + MY K G + D+   F  M   D+ +W +++ G+ +  + +  + +F E++  GV  ++
Sbjct: 405 VGMYVKTGAVQDAILAFDLMQGPDIASWNTLLSGFYSGNNCEHGLRIFKELICEGVLANK 464

Query: 416 IVFMAVLTACS 426
             ++ +L  C+
Sbjct: 465 YTYVGILRCCT 475



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 188/380 (49%), Gaps = 9/380 (2%)

Query: 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFND 173
           + ++ L+ C   ++L     +H   ++ G     ++ +SL+++Y  C   + +AR VF+ 
Sbjct: 62  SYAAALQGCAASRALRRGKALHARLLRSGPRPDAFLHDSLLNMYCKCG-RLADARSVFDG 120

Query: 174 MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG 233
           M  ++ V+WT +++    +G+    L +F EM  EGV  N ++ + A++AC     + F 
Sbjct: 121 MPHRDVVAWTAMVSAITAAGDAGAALRLFAEMSEEGVVPNGFALAAALKACTVGSDLGFT 180

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
             +HA  +K     +  V +S+++ Y     +  A +   +   +  ++WN ++  Y + 
Sbjct: 181 PQVHAQAVKLEGLFDPYVSSSLVEAYVSCGEVDVAERALLDSPVRSDVSWNALLNEYARD 240

Query: 294 GS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
           G  ++ + +F K+       + +T  +++  C  L     GQ VH  +++RGL+ +  L 
Sbjct: 241 GDYAKVMLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGLETDRVLN 300

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
           N LI+MY+KC +  D+ ++F+ + + D+V  + M+  +  H    EA ++F +M   GV+
Sbjct: 301 NCLIEMYSKCLSAEDAYEVFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDMGVK 360

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKE---A 469
           P++  F+ +    S  G V+        +     +  K +   +V +  + G V++   A
Sbjct: 361 PNQYTFVGLAIVASRTGDVNLCRSIHAHIVKSGFSRTKGVCDAIVGMYVKTGAVQDAILA 420

Query: 470 YELIKSMPFKPDESVWGPLL 489
           ++L++     PD + W  LL
Sbjct: 421 FDLMQG----PDIASWNTLL 436


>gi|224096616|ref|XP_002310672.1| predicted protein [Populus trichocarpa]
 gi|222853575|gb|EEE91122.1| predicted protein [Populus trichocarpa]
          Length = 551

 Score =  354 bits (909), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 183/512 (35%), Positives = 300/512 (58%), Gaps = 4/512 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L+T LI  Y   G    AR +FD MPER VVSW+  I+GY+   C+  A  VF++M+R  
Sbjct: 34  LSTKLIIFYSKLGDTVSARKVFDRMPERTVVSWSAQISGYSQNGCYQDALLVFLDMLRAG 93

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
              N FT  SVL+AC G++ L     + G   K     ++ V+++L+D+++ C   M++A
Sbjct: 94  FKANQFTYGSVLRACTGLRCLQRGMQIQGCLEKSRFASNLIVQSALLDLHSKCG-KMEDA 152

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             +F  M+ ++ VSW  +I  YA  G       +F+ M+ EG+  + ++F   ++A    
Sbjct: 153 SYLFGMMEERDVVSWNAIIGAYAVQGFSGDSFRMFRSMMQEGMSPDLFTFGSVLKASGMA 212

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             V     IH  +I+ G+GS++ +  S++D Y + + L+ A+  +  M  KD+I+   ++
Sbjct: 213 SDVIRVCQIHQLIIQLGYGSHISLSGSLIDAYAKCESLASAHCLYKSMPMKDMISCTALM 272

Query: 288 AGYEKSG--SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
            GY +    SS+ L++F +++      +     S+   CA +++LS G+Q+HA  ++   
Sbjct: 273 TGYARDSNYSSKALDLFKEIQQMHMKIDDVILCSMFNICANISSLSVGRQIHALALKCKP 332

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             ++A+ NALIDMYAK G I D+ + F+EM ++++++WTS++ GYG+HGHG EAI LF +
Sbjct: 333 TYDVAMGNALIDMYAKSGEIKDANRAFNEMEEKNVISWTSLITGYGSHGHGHEAIALFKK 392

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAG 464
           M   G++P+ I F+++L AC+H GL  EG + F +M + YN+ P  E + C+VDL  R G
Sbjct: 393 MEYEGLKPNDITFLSLLFACNHCGLTGEGWECFNNMISKYNILPRAEHFSCMVDLFARGG 452

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
            ++EAY LI  M  KP+ S+WG +LGAC  +    L + AA+ +  + P     Y++L++
Sbjct: 453 LLEEAYNLINKMNIKPNASLWGAILGACYIYGNMPLAEEAAIHLFKMDPENSVNYVVLAD 512

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWI 556
           IYAA G W+   K RK+M     KK  G S+I
Sbjct: 513 IYAAAGSWDNAWKMRKLMEERNLKKAPGYSFI 544



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 124/436 (28%), Positives = 209/436 (47%), Gaps = 45/436 (10%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I+ + L+  +   G +E+A  LF  M ERDVVSW  +I  Y        ++ +F  M++ 
Sbjct: 134 IVQSALLDLHSKCGKMEDASYLFGMMEERDVVSWNAIIGAYAVQGFSGDSFRMFRSMMQE 193

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            ++P+ FT  SVLKA      +     +H + I+ G    I +  SL+D YA  C S+ +
Sbjct: 194 GMSPDLFTFGSVLKASGMASDVIRVCQIHQLIIQLGYGSHISLSGSLIDAYAK-CESLAS 252

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGN-GYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           A  ++  M  K+ +S T L+TGYA   N     L +FKE+    ++++          CA
Sbjct: 253 AHCLYKSMPMKDMISCTALMTGYARDSNYSSKALDLFKEIQQMHMKIDDVILCSMFNICA 312

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           +   +S G+ IHA  +K     ++ + N+++DMY +   + DAN+ F+EM EK++I+W +
Sbjct: 313 NISSLSVGRQIHALALKCKPTYDVAMGNALIDMYAKSGEIKDANRAFNEMEEKNVISWTS 372

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I GY   G   E + +F KM+ E   PN  TF S++ AC            H G+   G
Sbjct: 373 LITGYGSHGHGHEAIALFKKMEYEGLKPNDITFLSLLFACN-----------HCGLTGEG 421

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
            +      N +I  Y    NI    + FS M D            +   G  +EA  L +
Sbjct: 422 WE----CFNNMISKY----NILPRAEHFSCMVDL-----------FARGGLLEEAYNLIN 462

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAG---LVDEGLKYFKSMNDYNVNPNKEI-YGCVVDLL 460
           +M    ++P+  ++ A+L AC   G   L +E      +++ + ++P   + Y  + D+ 
Sbjct: 463 KM---NIKPNASLWGAILGACYIYGNMPLAEEA-----AIHLFKMDPENSVNYVVLADIY 514

Query: 461 GRAGRVKEAYELIKSM 476
             AG    A+++ K M
Sbjct: 515 AAAGSWDNAWKMRKLM 530



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 132/261 (50%), Gaps = 1/261 (0%)

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
           +++ C  T     G LIH  ++ +GF SN+ +   ++  Y +      A + FD M E+ 
Sbjct: 3   SLQLCIETKAKKPGHLIHNQILTNGFASNIHLSTKLIIFYSKLGDTVSARKVFDRMPERT 62

Query: 280 LITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           +++W+  I+GY ++G   + L +F  M    F  N FT+ S++ AC  L  L  G Q+  
Sbjct: 63  VVSWSAQISGYSQNGCYQDALLVFLDMLRAGFKANQFTYGSVLRACTGLRCLQRGMQIQG 122

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
            + +     NL + +AL+D+++KCG + D+  +F  M +RD+V+W +++  Y   G   +
Sbjct: 123 CLEKSRFASNLIVQSALLDLHSKCGKMEDASYLFGMMEERDVVSWNAIIGAYAVQGFSGD 182

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVD 458
           +  +F  M++ G+ PD   F +VL A   A  V    +  + +       +  + G ++D
Sbjct: 183 SFRMFRSMMQEGMSPDLFTFGSVLKASGMASDVIRVCQIHQLIIQLGYGSHISLSGSLID 242

Query: 459 LLGRAGRVKEAYELIKSMPFK 479
              +   +  A+ L KSMP K
Sbjct: 243 AYAKCESLASAHCLYKSMPMK 263



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 87/168 (51%), Gaps = 1/168 (0%)

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTW 383
           C    A   G  +H  I+  G   N+ L+  LI  Y+K G+   ++K+F  M +R +V+W
Sbjct: 7   CIETKAKKPGHLIHNQILTNGFASNIHLSTKLIIFYSKLGDTVSARKVFDRMPERTVVSW 66

Query: 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND 443
           ++ + GY  +G  ++A+ +F +M+++G + ++  + +VL AC+    +  G++    +  
Sbjct: 67  SAQISGYSQNGCYQDALLVFLDMLRAGFKANQFTYGSVLRACTGLRCLQRGMQIQGCLEK 126

Query: 444 YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
                N  +   ++DL  + G++++A  L   M  + D   W  ++GA
Sbjct: 127 SRFASNLIVQSALLDLHSKCGKMEDASYLFGMME-ERDVVSWNAIIGA 173


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  354 bits (908), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 178/494 (36%), Positives = 303/494 (61%), Gaps = 4/494 (0%)

Query: 117 SVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW 176
           + + AC   ++L     VH   I      ++++   L+ +Y  C  ++D+AR V + M  
Sbjct: 15  AAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCG-ALDDARNVLDRMPE 73

Query: 177 KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLI 236
           ++ VSWTT+I+GY+ +      L +F +ML  G   N Y+ +  + +C+    +  GK +
Sbjct: 74  RSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQV 133

Query: 237 HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-S 295
           H+ ++K  F S++ V +S+LDMY + + + +A + FD + E+D+++   II+GY + G  
Sbjct: 134 HSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLD 193

Query: 296 SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
            E L++F ++ SE    N  TFT+++ A + LA+L  G+QVHA I+R+ L   +AL N+L
Sbjct: 194 EEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSL 253

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           IDMY+KCG +  S+++F  M +R +V+W +M++GYG HG G E I LF ++ K  V+PD 
Sbjct: 254 IDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDS 312

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
           +  +AVL+ CSH GLVDEGL  F ++  + +   +   YGC++DLLGR+GR+++A  LI+
Sbjct: 313 VTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIE 372

Query: 475 SMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEE 534
           +MPF+   S+WG LLGAC+ H   ++G+L A ++L+++P   G Y+ILSNIYAA G W++
Sbjct: 373 NMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKD 432

Query: 535 FAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAY 594
             K RK+M      KE G SWI +   +  F ++++     + +   ++ +   +    +
Sbjct: 433 VFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGF 492

Query: 595 EPDIDCLIHDLEGE 608
            PD+ C++HD++ E
Sbjct: 493 VPDLSCVLHDVDDE 506



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 172/304 (56%), Gaps = 15/304 (4%)

Query: 45  PSI-LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           P++ L T L+  Y   G +++AR + D MPER VVSWT MI+GY+    H +A  +F++M
Sbjct: 43  PAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKM 102

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           +R    PN +TL++VL +C G +S+     VH + +K   E  ++V +SL+D+YA    +
Sbjct: 103 LRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAK-SEN 161

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +  AR VF+ +  ++ VS T +I+GYA  G     L +F+++  EG++ N  +F+  V A
Sbjct: 162 IQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTA 221

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
            +    + +GK +HA +++      + + NS++DMY +   L  + + FD M E+ +++W
Sbjct: 222 LSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSW 281

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N ++ GY + G   E +++F  +  E   P+  T  ++++ C+           H G+V 
Sbjct: 282 NAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCS-----------HGGLVD 329

Query: 343 RGLD 346
            GLD
Sbjct: 330 EGLD 333



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 130/231 (56%), Gaps = 1/231 (0%)

Query: 205 MLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264
           M L G     + +  A+ AC     +  G+ +HA +I   +   + +   ++ MY R   
Sbjct: 1   MALPGASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGA 60

Query: 265 LSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAA 323
           L DA    D M E+ +++W T+I+GY ++    E L++F KM      PN +T  +++ +
Sbjct: 61  LDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTS 120

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTW 383
           C+   ++  G+QVH+ +V+   + ++ + ++L+DMYAK  NI +++++F  + +RD+V+ 
Sbjct: 121 CSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSC 180

Query: 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434
           T+++ GY   G  +EA++LF ++   G++ + + F  ++TA S    +D G
Sbjct: 181 TAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYG 231



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 84/161 (52%)

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           + + I AC    AL  G+QVHA ++       + L   L+ MY +CG + D++ +   M 
Sbjct: 13  YEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMP 72

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
           +R +V+WT+M+ GY       EA++LF +M+++G  P+      VLT+CS    + +G +
Sbjct: 73  ERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQ 132

Query: 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMP 477
               +   N   +  +   ++D+  ++  ++EA  +  ++P
Sbjct: 133 VHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLP 173


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 1058

 Score =  354 bits (908), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 200/599 (33%), Positives = 320/599 (53%), Gaps = 43/599 (7%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           +G  ++ + ++ +Y   G ++ A   F+ MPER+  SWT MIA +      + A  ++  
Sbjct: 393 EGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYER 452

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           +    V     T ++++ A   +  +  A L+      E L  ++   N+++  Y    +
Sbjct: 453 VPEQTVA----TKTAMMTAYAQVGRIQKARLI----FDEILNPNVVAWNAIIAGYTQNGM 504

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            +  A+ +F  M  KN  SW  +I G+  +      L +  E+   G   +  SF+ A+ 
Sbjct: 505 -LKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALS 563

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFD------------------- 263
           ACA+ G V  G++IH+  IK G   N  VMN ++ MY +                     
Sbjct: 564 ACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVS 623

Query: 264 ------------CLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERF 310
                        L DA   F++M ++D+++W  II+ Y ++G  E  L++F  M +   
Sbjct: 624 WNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGI 683

Query: 311 SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQK 370
            PN  T TS+++AC  L A+  G+Q HA I + G D  L + N+LI MY KCG   D   
Sbjct: 684 KPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCG-YEDGFC 742

Query: 371 IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           +F EM + DL+TW ++++G   +G GKEAI++F++M   G+ PD++ F+ VL ACSHAGL
Sbjct: 743 VFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGL 802

Query: 431 VDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           VDEG  +F SM   Y + P    Y C+VDLLGRAG + EA  LI++MP KPD  +W  LL
Sbjct: 803 VDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALL 862

Query: 490 GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKK 549
           GAC+ HR   LG+  A R+  +      TY++LSN++A++G W++ A+ RK+M+  G  K
Sbjct: 863 GACRIHRNVELGQRVAERLFQMTKPKSATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTK 922

Query: 550 EVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           E G+SWI+V++K+  F+  D+     + +Y  L+        T Y PD + ++HD+E E
Sbjct: 923 EPGISWIQVKNKLHCFVTGDRTHDQIEEIYSALKEYYGCFRATGYMPDTNFVLHDVEEE 981



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 129/476 (27%), Positives = 234/476 (49%), Gaps = 48/476 (10%)

Query: 62  IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121
           + EAR LFD+MPER+ VSW VMI+GY   + + +AW VFV+M R    P+      VL A
Sbjct: 311 MSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSA 370

Query: 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS 181
             G+  L     +  +AIK G EG + V +++++ Y T   S+D A   F  M  +N+ S
Sbjct: 371 ITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAY-TRNGSLDLAMHFFETMPERNEYS 429

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           WTT+I  +A  G     + +++ +  +         ++A +    T +   G++  A +I
Sbjct: 430 WTTMIAAFAQCGRLDDAIQLYERVPEQ---------TVATKTAMMTAYAQVGRIQKARLI 480

Query: 242 -KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECL 299
                  N+   N+I+  Y +   L +A   F +M  K+  +W  +IAG+ +   S E L
Sbjct: 481 FDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREAL 540

Query: 300 NMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMY 359
            +  ++      P+  +FTS ++ACA +  +  G+ +H+  ++ G   N  + N LI MY
Sbjct: 541 ELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMY 600

Query: 360 AKCGNIS-------------------------------DSQKIFSEMSDRDLVTWTSMMI 388
           AKCGN+                                D++ +F +M  RD+V+WT+++ 
Sbjct: 601 AKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIIS 660

Query: 389 GYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP 448
            Y   GHG+ A++LF +M+  G++P+++   ++L+AC + G +  G ++   +     + 
Sbjct: 661 AYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDT 720

Query: 449 NKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLA 504
              +   ++ +  + G  ++ + + + MP + D   W  +L  C ++    LGK A
Sbjct: 721 FLFVGNSLITMYFKCG-YEDGFCVFEEMP-EHDLITWNAVLVGCAQN---GLGKEA 771



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 133/499 (26%), Positives = 220/499 (44%), Gaps = 99/499 (19%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P+      T ++ +Y   G I++AR +FDE+   +VV+W  +IAGYT      +A  +F
Sbjct: 453 VPEQTVATKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLF 512

Query: 101 VEM---------------VRNEVN----------------PNAFTLSSVLKACKGMKSLS 129
            +M               V+NE +                P+  + +S L AC  +  + 
Sbjct: 513 QKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVE 572

Query: 130 NAALVHGMAIKEGLEGSIYVENSLMDVYATC-----------------------CIS--- 163
              ++H +AIK G + + YV N L+ +YA C                        IS   
Sbjct: 573 IGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLS 632

Query: 164 ----MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
               +D+AR+VF  M  ++ VSWT +I+ Y  +G+G   L +F +ML  G++ N  + + 
Sbjct: 633 ENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTS 692

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC-LSDANQYFDEMTEK 278
            + AC + G +  G+  HA + K GF + L V NS++ MY  F C   D    F+EM E 
Sbjct: 693 LLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMY--FKCGYEDGFCVFEEMPEH 750

Query: 279 DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
           DLITWN ++ G  ++G   E + +F +M+ E   P+  +F  ++ AC+           H
Sbjct: 751 DLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACS-----------H 799

Query: 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
           AG+V  G     A  N++   Y     +                 +T M+   G  G+  
Sbjct: 800 AGLVDEG----WAHFNSMTQKYGIMPLVYH---------------YTCMVDLLGRAGYLS 840

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVV 457
           EA  L + M    V+PD +++ A+L AC     V+ G +  + +      P    Y  + 
Sbjct: 841 EAEALIENM---PVKPDSVIWEALLGACRIHRNVELGQRVAERLFQM-TKPKSATYVLLS 896

Query: 458 DLLGRAGRVKEAYELIKSM 476
           +L    G   +  E+ K M
Sbjct: 897 NLFASQGMWDKVAEIRKLM 915



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 108/447 (24%), Positives = 207/447 (46%), Gaps = 21/447 (4%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV-RNEVN 109
           ++I  Y   G ++EAR LFD    +++ +WT+++ GY       +A  VF  M  RN V+
Sbjct: 207 SMINGYSQNGKVDEARLLFDAFVGKNIRTWTILLTGYAKEGRIEEAREVFESMTERNVVS 266

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
            NA     V         L NA  +      E  E ++   NS++  Y   C  M  AR 
Sbjct: 267 WNAMISGYVQNG-----DLKNARKL----FDEMPEKNVASWNSVVTGYCH-CYRMSEARE 316

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           +F+ M  +N VSW  +I+GY H  + +    VF +M       +   F + + A      
Sbjct: 317 LFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDD 376

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           +     +    IK G+  ++ V ++IL+ Y R   L  A  +F+ M E++  +W T+IA 
Sbjct: 377 LELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAA 436

Query: 290 YEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           + + G   + + ++ ++  +  +    T T+++ A A +  +   + +   I    L+ N
Sbjct: 437 FAQCGRLDDAIQLYERVPEQTVA----TKTAMMTAYAQVGRIQKARLIFDEI----LNPN 488

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           +   NA+I  Y + G + +++ +F +M  ++  +W +M+ G+  +   +EA+EL  E+ +
Sbjct: 489 VVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHR 548

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKE 468
           SG  P    F + L+AC++ G V+ G              N  +   ++ +  + G V++
Sbjct: 549 SGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVED 608

Query: 469 AYELIKSMPFKPDESVWGPLLGACKEH 495
              + +++  K D   W  L+    E+
Sbjct: 609 GSHVFRTIRVK-DTVSWNSLISGLSEN 634



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/333 (21%), Positives = 142/333 (42%), Gaps = 88/333 (26%)

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           ++ AR VFN+M  ++ VSW ++I GY+ +G                              
Sbjct: 187 VEEARRVFNEMIQRDVVSWNSMINGYSQNGK----------------------------- 217

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
                 V   +L+  A +    G N+     +L  Y +   + +A + F+ MTE+++++W
Sbjct: 218 ------VDEARLLFDAFV----GKNIRTWTILLTGYAKEGRIEEAREVFESMTERNVVSW 267

Query: 284 NTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N +I+GY ++G       +F +M  +                                  
Sbjct: 268 NAMISGYVQNGDLKNARKLFDEMPEK---------------------------------- 293

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
                N+A  N+++  Y  C  +S+++++F +M +R+ V+W  M+ GY       EA ++
Sbjct: 294 -----NVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDV 348

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE----IYGCVVD 458
           F +M ++  RPD+ +F+ VL+A +  GL D  L+   S+    +    E    +   +++
Sbjct: 349 FVKMCRTVARPDQSIFVVVLSAIT--GLDD--LELIGSLRPIAIKTGYEGDVVVGSAILN 404

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
              R G +  A    ++MP + +E  W  ++ A
Sbjct: 405 AYTRNGSLDLAMHFFETMP-ERNEYSWTTMIAA 436



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 93/199 (46%), Gaps = 17/199 (8%)

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           +L   N  I    + G + +++++F+EM  RD+V+W SM+ GY  +G   EA  LFD  V
Sbjct: 170 HLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFV 229

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYN-VNPNKEIYGCVVDLLGRAGRV 466
              +R     +  +LT  +  G ++E  + F+SM + N V+ N  I G V     + G +
Sbjct: 230 GKNIR----TWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYV-----QNGDL 280

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP--NMMGTYIILSN 524
           K A +L   MP K   S    + G C  +R+       A  + D  P  N +   +++S 
Sbjct: 281 KNARKLFDEMPEKNVASWNSVVTGYCHCYRMSE-----ARELFDQMPERNSVSWMVMISG 335

Query: 525 IYAAEGKWEEFAKFRKIMR 543
                  WE +  F K+ R
Sbjct: 336 YVHISDYWEAWDVFVKMCR 354


>gi|359486457|ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containing protein At2g40720
           [Vitis vinifera]
          Length = 836

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 197/563 (34%), Positives = 312/563 (55%), Gaps = 11/563 (1%)

Query: 29  VKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYT 88
           V K + Q DP         + T+L+  Y   G +E+A+ +FD++ +++V     MI+ + 
Sbjct: 270 VIKMNFQDDP--------YVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFI 321

Query: 89  SFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIY 148
                  A  ++ +M   E   ++FT+SS+L  C  + S      VH   IK  ++ ++ 
Sbjct: 322 GNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVA 381

Query: 149 VENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE 208
           ++++L+ +Y  C  S ++A  VF  MK ++ V+W ++I G+  +      L +F+ M  E
Sbjct: 382 IQSALLTMYYKCG-STEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKE 440

Query: 209 GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDA 268
           GV+ +    +  + A      V  G LIH   IK G  S++ V  S++DMY +F     A
Sbjct: 441 GVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESA 500

Query: 269 NQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATL 327
              F  M  K+L+ WN++I+ Y  +G  E  +N+  ++    F  +  + T+++ A +++
Sbjct: 501 EMVFSSMPNKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSV 560

Query: 328 AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMM 387
           AAL  G+ +HA  +R  +  +L + NALIDMY KCG +  +Q IF  M  R+LVTW SM+
Sbjct: 561 AALLKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMI 620

Query: 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNV 446
            GYG+HG+ +EA+ LF EM +S   PD + F+A++T+CSH+G+V+EGL  F+ M  +Y V
Sbjct: 621 AGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGV 680

Query: 447 NPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAAL 506
            P  E Y  VVDLLGRAGR+ +AY  I+ MP   D SVW  LL AC+ HR   LG+L A 
Sbjct: 681 EPRMEHYASVVDLLGRAGRLDDAYSFIRGMPIDADRSVWLCLLFACRAHRNMELGELVAD 740

Query: 507 RVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFI 566
            +L ++P     Y+ L N+Y     W+  A  R  M+G G KK  G SWIEV+++V  F 
Sbjct: 741 NLLKMEPARGSNYVPLLNLYGEVEMWDRAANLRASMKGRGLKKSPGCSWIEVKNRVDVFF 800

Query: 567 ANDKMGSHTQYVYGVLEMLIRHM 589
           + D   +    +Y  L  L  +M
Sbjct: 801 SGDSSSTRRIEIYKTLSSLKSNM 823



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 130/483 (26%), Positives = 234/483 (48%), Gaps = 42/483 (8%)

Query: 28  SVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPER-----DVVSWTV 82
           S+    +QSDP         +AT+LI  Y   GL+  A  +FD+M E      D+  W  
Sbjct: 80  SIVTMGLQSDP--------YIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNP 131

Query: 83  MIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG 142
           +I GY  +    +    F  M           LS  +   +          +HG  I+  
Sbjct: 132 VIDGYFKYGHFEEGLAQFCRMQE---------LSWYMAGRQ----------IHGYIIRNM 172

Query: 143 LEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVF 202
            EG  Y+E +L+ +Y++C   M+   L        N V+W  +I G+  +G     L ++
Sbjct: 173 FEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELY 232

Query: 203 KEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRF 262
                E  ++   SF+ A  AC+    + FG+ +H  VIK  F  +  V  S+L MY + 
Sbjct: 233 SLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKS 292

Query: 263 DCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSII 321
             + DA + FD++ +K++   N +I+ +  +G + + L +++KMK+     + FT +S++
Sbjct: 293 GSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLL 352

Query: 322 AACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLV 381
           + C+ + +   G+ VHA +++R +  N+A+ +AL+ MY KCG+  D+  +F  M +RD+V
Sbjct: 353 SGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVV 412

Query: 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441
            W SM+ G+  +   K+A++LF  M K GV+ D  V  +V++    AGL  E ++    +
Sbjct: 413 AWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVIS----AGLGLENVELGHLI 468

Query: 442 NDYNVNPNKE----IYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
           + + +    E    +   +VD+  + G  + A  +  SMP K +   W  ++     + L
Sbjct: 469 HGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNK-NLVAWNSMISCYSWNGL 527

Query: 498 PNL 500
           P +
Sbjct: 528 PEM 530



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/416 (23%), Positives = 192/416 (46%), Gaps = 31/416 (7%)

Query: 93  HNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENS 152
           ++QA  +  +   + +    FT  S+LK C  + +L +   +H   +  GL+   Y+  S
Sbjct: 36  YSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGLQSDPYIATS 95

Query: 153 LMDVYATCCISMDNARLVFNDMKWKNDVS-----WTTLITGYAHSGNGYGGLGVFKEMLL 207
           L+++Y  C + + +A  VF+ M    D +     W  +I GY   G+   GL  F  M  
Sbjct: 96  LINMYVKCGL-LGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRM-- 152

Query: 208 EGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSD 267
                                W   G+ IH  +I++ F  +  +  +++ MY       +
Sbjct: 153 -----------------QELSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPME 195

Query: 268 ANQYFDEMTEK-DLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACA 325
           A   F ++  + +++ WN +I G+ ++G  E  L ++S  K+E       +FT    AC+
Sbjct: 196 AWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACS 255

Query: 326 TLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTS 385
               L  G+QVH  +++     +  +  +L+ MYAK G++ D++K+F ++ D+++    +
Sbjct: 256 HGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNA 315

Query: 386 MMIGYGAHGHGKEAIELFDEMVKSGVRP-DRIVFMAVLTACSHAGLVDEGLKYFKSMNDY 444
           M+  +  +G   +A+ L+++M K+G  P D     ++L+ CS  G  D G      +   
Sbjct: 316 MISAFIGNGRAYDALGLYNKM-KAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKR 374

Query: 445 NVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL-GACKEHRLPN 499
           ++  N  I   ++ +  + G  ++A  +  +M  + D   WG ++ G C+  R  +
Sbjct: 375 SMQSNVAIQSALLTMYYKCGSTEDADSVFYTMK-ERDVVAWGSMIAGFCQNRRFKD 429


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 187/569 (32%), Positives = 321/569 (56%), Gaps = 11/569 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           IL T LI  Y     +E AR  FDEM ++ +V+W  +IAGY+    H  A  ++ +MV  
Sbjct: 95  ILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSK 154

Query: 107 E---VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
               + P+A T SS L AC  +  +S    +    +  G      V+N+L+++Y+ C  S
Sbjct: 155 SPEGMKPDAITFSSALYACSVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCG-S 213

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +++AR VF+ +K ++ ++W T+I+GYA  G     L +F+ M     + N  +F   + A
Sbjct: 214 LESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTA 273

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR-FDCLSDANQYFDEMTEKDLIT 282
           C +   +  G+ IH  V +HG+ S+L + N +L+MY +    L +A Q F+ +  +D+IT
Sbjct: 274 CTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVIT 333

Query: 283 WNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           WN +I  Y + G + + L++F +M+ E  +PN  T +++++ACA L A   G+ VHA I 
Sbjct: 334 WNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIA 393

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
                 ++ L N+L++MY +CG++ D+  +F+ + D+ LV+W++++  Y  HGH +  +E
Sbjct: 394 SGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLE 453

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLL 460
            F E+++ G+  D +  ++ L+ACSH G++ EG++ F SM  D+ + P+   + C+VDLL
Sbjct: 454 HFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLL 513

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP-NMMGTY 519
            RAGR++ A  LI  MPF PD   W  LL  CK H         A ++ +L+  +   T 
Sbjct: 514 SRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTV 573

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVY 579
            +LSN+YA  G+W++    RK      ++K  G S+IE+ D V  F+A DK     + + 
Sbjct: 574 TLLSNVYAEAGRWDD---VRKTRNRRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIA 630

Query: 580 GVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
             ++ L + M +  Y PD+  ++H+++ E
Sbjct: 631 AEIKRLSKQMKDAGYVPDMRMVLHNVKEE 659



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 108/364 (29%), Positives = 179/364 (49%), Gaps = 3/364 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           SI+   LI  Y   G +E AR +FD +  RDV++W  MI+GY       QA  +F  M  
Sbjct: 198 SIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGP 257

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           N+  PN  T   +L AC  ++ L     +H    + G E  + + N L+++Y  C  S++
Sbjct: 258 NDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLE 317

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            AR VF  ++ ++ ++W  LI  Y   G     L +FK+M LE V  N  + S  + ACA
Sbjct: 318 EARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACA 377

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
             G    GK +HA +      +++ + NS+++MY R   L D    F  + +K L++W+T
Sbjct: 378 VLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWST 437

Query: 286 IIAGYEKSGSSEC-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV-RR 343
           +IA Y + G S   L  F ++  E  + +  T  S ++AC+    L  G Q    +V   
Sbjct: 438 LIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDH 497

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSD-RDLVTWTSMMIGYGAHGHGKEAIEL 402
           GL  +      ++D+ ++ G +  ++ +  +M    D V WTS++ G   H   K A  +
Sbjct: 498 GLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARV 557

Query: 403 FDEM 406
            D++
Sbjct: 558 ADKL 561



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 105/376 (27%), Positives = 209/376 (55%), Gaps = 13/376 (3%)

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
           C S+ +A  VF+ ++  N VSWT ++  +A +G+    LG ++ M+LEG+  +   F +A
Sbjct: 5   CGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVA 64

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGS-NLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
           +  C+S+  +  G+L+HA +++      ++ +  +++ MY R   L  A + FDEM +K 
Sbjct: 65  IGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKT 124

Query: 280 LITWNTIIAGYEKSGSSE-CLNMFSKMKS---ERFSPNCFTFTSIIAACATLAALSCGQQ 335
           L+TWN +IAGY ++G     L ++  M S   E   P+  TF+S + AC+ +  +S G++
Sbjct: 125 LVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGRE 184

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
           + A  V  G   +  + NALI+MY+KCG++  ++K+F  + +RD++ W +M+ GY   G 
Sbjct: 185 IEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGA 244

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455
             +A+ELF  M  +  +P+ + F+ +LTAC++   +++G    + + ++    +  I   
Sbjct: 245 ATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNV 304

Query: 456 VVDLLGR-AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLK 512
           ++++  + +  ++EA ++ + +  + D   W  L+ A  ++      L     +++ ++ 
Sbjct: 305 LLNMYTKCSSSLEEARQVFERLRTR-DVITWNILIVAYVQYGQAKDALDIFKQMQLENVA 363

Query: 513 PNMMGTYIILSNIYAA 528
           PN     I LSN+ +A
Sbjct: 364 PN----EITLSNVLSA 375



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 100/182 (54%), Gaps = 5/182 (2%)

Query: 258 MYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFT 316
           MY +   ++DA   F  +   + ++W  I+A + ++G   E L  + +M  E   P+   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 317 FTSIIAACATLAALSCGQQVHAGIVR-RGLDGNLALANALIDMYAKCGNISDSQKIFSEM 375
           F   I  C++   L  GQ +HA I+  + L+ ++ L  ALI MYA+C ++  ++K F EM
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 376 SDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK---SGVRPDRIVFMAVLTACSHAGLVD 432
             + LVTW +++ GY  +G  + A++++ +MV     G++PD I F + L ACS  G + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 433 EG 434
           +G
Sbjct: 181 QG 182



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 23/158 (14%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           K   +L  +L+  Y   G +++   +F  + ++ +VSW+ +IA Y            F E
Sbjct: 398 KADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWE 457

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEG--SIYVENSLMDVYA-- 158
           +++  +  +  T+ S L AC            HG  +KEG++   S+  ++ L   Y   
Sbjct: 458 LLQEGLAADDVTMVSTLSACS-----------HGGMLKEGVQSFLSMVGDHGLAPDYRHF 506

Query: 159 TCCIS-------MDNARLVFNDMKWKND-VSWTTLITG 188
            C +        ++ A  + +DM +  D V+WT+L++G
Sbjct: 507 LCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSG 544


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 188/525 (35%), Positives = 306/525 (58%), Gaps = 5/525 (0%)

Query: 79  SWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMA 138
           SW V +      +   ++ +++  M+R+  +P+AF+   +LK+C  +    +   +H   
Sbjct: 17  SWNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHV 76

Query: 139 IKEGLEGSIYVENSLMDVYATCCISMDNARLVF--NDMKWKNDVSWTTLITGYAHSGNGY 196
           I+ G E   +V  +L+ +Y  C + +++AR VF  N    +  V +  LI+GY  +    
Sbjct: 77  IRGGCEAEPFVLTALISMYCKCGL-VEDARKVFEENPHSSQLGVCYNALISGYTANSKVS 135

Query: 197 GGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSIL 256
               +F+ M   GV ++  +    V  C    ++  G+ +H   +K G  S + V+NS +
Sbjct: 136 DAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFI 195

Query: 257 DMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCF 315
            MY +   +    + FDEM  K LITWN +I+GY ++G + + L +F +MKS    P+ F
Sbjct: 196 TMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPF 255

Query: 316 TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEM 375
           T  S++++CA L A   GQ+V   +   G   N+ L+NALI MYA+CGN++ ++ +F  M
Sbjct: 256 TLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIM 315

Query: 376 SDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGL 435
             + LV+WT+M+  YG HG G+  + LFD+M+K G+RPD  VF+ VL+ACSH+GL D+GL
Sbjct: 316 PVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGL 375

Query: 436 KYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKE 494
           + F++M  +Y + P  E Y C+VDLLGRAGR+ EA E I SMP +PD +VWG LLGACK 
Sbjct: 376 ELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACKI 435

Query: 495 HRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMS 554
           H+  ++ +LA  +V++ +P  +G Y+++SNIY+     E   + R +MR    +K+ G S
Sbjct: 436 HKNVDMAELAFAKVIEFEPMNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYS 495

Query: 555 WIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDID 599
           ++E + KV  F+A D+    T+ V+ +L+ L   + E A   D D
Sbjct: 496 YVEHKGKVHLFLAGDRSHEQTEEVHRMLDELETSVMELAGNMDCD 540



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 122/449 (27%), Positives = 205/449 (45%), Gaps = 54/449 (12%)

Query: 45  PSILATNLIKSYFDEGLIEEARTLFDEMPERDV--VSWTVMIAGYTSFNCHNQAWTVFVE 102
           P +L T LI  Y   GL+E+AR +F+E P      V +  +I+GYT+ +  + A  +F  
Sbjct: 85  PFVL-TALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDAAFMFRR 143

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M    V+ ++ T+  ++  C   + L     +HG  +K G    + V NS + +Y  C  
Sbjct: 144 MKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFITMYMKCG- 202

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
           S+++ R +F++M  K  ++W  +I+GY+ +G  Y  L +F++M   GV  +P++    + 
Sbjct: 203 SVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLS 262

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           +CA  G    G+ +   V  +GF  N+ + N+++ MY R   L+ A   FD M  K L++
Sbjct: 263 SCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVS 322

Query: 283 WNTIIAGYEKSGSSEC-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           W  +I  Y   G  E  L +F  M      P+   F  +++AC+           H+G+ 
Sbjct: 323 WTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACS-----------HSGLT 371

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
            +GL+    L  A+   Y     +    + +S + D             G  G   EA+E
Sbjct: 372 DKGLE----LFRAMKREY----KLEPGPEHYSCLVDL-----------LGRAGRLDEAME 412

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG--------------LKYFKSM-NDYNV 446
             D M    V PD  V+ A+L AC     VD                + Y+  M N Y+ 
Sbjct: 413 FIDSM---PVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPMNIGYYVLMSNIYSD 469

Query: 447 NPNKE-IYGCVVDLLGRAGRVKEAYELIK 474
           + N+E I+   V +  RA R K  Y  ++
Sbjct: 470 SKNQEGIWRIRVMMRERAFRKKPGYSYVE 498


>gi|222626149|gb|EEE60281.1| hypothetical protein OsJ_13335 [Oryza sativa Japonica Group]
          Length = 1135

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 187/552 (33%), Positives = 314/552 (56%), Gaps = 12/552 (2%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G + + + LI+ Y   G +  A+ +FD M   DVV +T +I+ +        A    ++M
Sbjct: 147 GDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQM 206

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKE-GLEG-SIYVENSLMDVYATCC 161
           ++  + PN  T++++L AC  +        +HG  IK+ GL   S+Y   +L+D Y+   
Sbjct: 207 LKQGLKPNEHTMTTILTACPRVLGQQ----IHGYLIKKIGLRSQSVYSSTALIDFYSRNG 262

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
                A+ VF+ +  KN VSW +++  Y   G     L VF +M+ EGV+ N ++ SI +
Sbjct: 263 -EFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVL 321

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
            AC S G    G+ +H + IKH   +++ V N++L MY R   + +     +++   DL+
Sbjct: 322 GACGSIG---LGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLV 378

Query: 282 TWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           +W T I+   ++G  E  + +  +M SE F+PN + F+S++++CA +A+L  G Q H   
Sbjct: 379 SWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLA 438

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           ++ G D  +   NALI+MY+KCG +  ++  F  M   D+ +W S++ G+  HG   +A+
Sbjct: 439 LKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKAL 498

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDL 459
           E+F +M  +G++PD   F+ VL  C+H+G+V+EG  +F+ M D Y+  P    Y C++D+
Sbjct: 499 EVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDM 558

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
           LGR GR  EA  +I  MPF+PD  +W  LL +CK HR  ++GKLAA R+++L      +Y
Sbjct: 559 LGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSASY 618

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVY 579
           +++SNIYA  G+WE+  K R+ M   G KK+ G SWIE+ ++V  F + D    ++  +Y
Sbjct: 619 VLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIEINNEVHTFASRDMSHPNSDSIY 678

Query: 580 GVLEMLIRHMNE 591
            +L  L+  M +
Sbjct: 679 QMLGELVAVMQD 690



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 126/496 (25%), Positives = 239/496 (48%), Gaps = 49/496 (9%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +L    +      G + +A  LFD MP ++VV+WT +++GYT       A  +F +MV +
Sbjct: 49  VLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVES 108

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V PN F  ++ L AC  + +L     VH +A++ G  G  ++ + L+++Y+ C  S+  
Sbjct: 109 GVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCG-SLPA 167

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A+ VF+ M   + V +T+LI+ +  +G          +ML +G++ N ++ +  + AC  
Sbjct: 168 AKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPR 227

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNS--ILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
                 G+ IH  +IK     +  V +S  ++D Y R      A   FD +  K++++W 
Sbjct: 228 V----LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWC 283

Query: 285 TIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           +++  Y + G   E L +F  M SE   PN F  + ++ AC ++     G+Q+H   ++ 
Sbjct: 284 SMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGL---GRQLHCSAIKH 340

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
            L  ++ ++NAL+ MY + G + + + + +++ + DLV+WT+ +     +G G++AI L 
Sbjct: 341 DLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALL 400

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY-------------------------- 437
            +M   G  P+   F +VL++C+    +D+G+++                          
Sbjct: 401 CQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKC 460

Query: 438 ---------FKSMNDYNVNP-NKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGP 487
                    F  M+ ++V   N  I+G      G A +  E +  ++S   KPD+S +  
Sbjct: 461 GQMGSARLAFDVMHTHDVTSWNSLIHGHAQH--GDANKALEVFSKMRSNGIKPDDSTFLG 518

Query: 488 LLGACKEHRLPNLGKL 503
           +L  C    +   G+L
Sbjct: 519 VLMGCNHSGMVEEGEL 534



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 84/178 (47%), Gaps = 3/178 (1%)

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           ++ L    ++   K G ++D+  +F  M  +++V WTS+M GY  +G  + A+ +F +MV
Sbjct: 47  DVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMV 106

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
           +SGV P+     A L AC+  G +  G +            +  I  C++++  R G + 
Sbjct: 107 ESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLP 166

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD--LKPNMMGTYIILS 523
            A E+   M   PD   +  L+ A   +    L   A +++L   LKPN      IL+
Sbjct: 167 AAKEVFDRMD-SPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILT 223


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 189/573 (32%), Positives = 314/573 (54%), Gaps = 34/573 (5%)

Query: 64  EARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACK 123
           +A  +F+ MPERD VSW  +I+ ++      Q   +FVEM     +PN  T  SVL AC 
Sbjct: 230 KALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACA 289

Query: 124 GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWT 183
               L   A +H   ++      +   N L+D+YA C   +D A+ VF  ++  + +SW 
Sbjct: 290 STSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCG-CLDLAKRVFKSLREHDHISWN 348

Query: 184 TLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH 243
           +LITG  H G G   L +F +M    V ++ +     +  C+   + S G+L+H   IK 
Sbjct: 349 SLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKS 408

Query: 244 GFGSNLPVMNSILDMYC-------------------------------RFDCLSDANQYF 272
           G GS+ PV N+I+ MY                                R   +  A  YF
Sbjct: 409 GMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYF 468

Query: 273 DEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALS 331
           D M E++++TWN++++ Y ++G S E L ++  M+S    P+  TFT+ I ACA LA + 
Sbjct: 469 DMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAIVK 528

Query: 332 CGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG 391
            G QV     + GL  N+++AN+++ MY++CG I +++  F  + D+DL++W +M+  + 
Sbjct: 529 LGMQVVTHATKFGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSIDDKDLISWNAMLAAFA 588

Query: 392 AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNK 450
            +G G + I+ F++M+K+  +P+ I +++VL+ CSH GLV EG  YF SM   + ++P  
Sbjct: 589 QNGLGIKVIDTFEDMLKTECKPNHISYVSVLSGCSHMGLVAEGKHYFDSMTRVFGISPTN 648

Query: 451 EIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD 510
           E + C+VDLLGRAG +++A +LI+ MPFKP+ +VW  LLG+C+ H    L + AA ++++
Sbjct: 649 EHFSCMVDLLGRAGLLEQAKDLIEGMPFKPNATVWSALLGSCRVHHDLRLAETAAKKLME 708

Query: 511 LKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDK 570
           L       Y++LSN+Y+  G+ +  A  RK+M+  G +   G SWIEV ++V  F  ++ 
Sbjct: 709 LDVEGSEGYVLLSNMYSESGELDNVADMRKLMKVKGIRTSRGCSWIEVDNRVHVFTVDET 768

Query: 571 MGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIH 603
                + VY  LE +++ + +T     ++  +H
Sbjct: 769 SHPQIKEVYLKLEEMMKMIEDTGKYITVESSVH 801



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 143/536 (26%), Positives = 247/536 (46%), Gaps = 76/536 (14%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPER--DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE- 107
            +I++      + +A  LFDEMP R  D VSWT MI+GY+    H++++  F  M+R+  
Sbjct: 79  TMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSLMIRDTN 138

Query: 108 ---VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC---- 160
               N + F+ +SV+KAC  +     A  +H +  K G      ++NS++ +Y  C    
Sbjct: 139 DGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVD 198

Query: 161 ---CISMDNAR-----------------------LVFNDMKWKNDVSWTTLITGYAHSGN 194
               +  D  R                        +FN M  +++VSW TLI+ ++  G 
Sbjct: 199 LAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGF 258

Query: 195 GYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNS 254
           G   L +F EM  +G   N  ++   + ACAST  + +G  +HA +++     +L   N 
Sbjct: 259 GVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLDLVFGNG 318

Query: 255 ILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPN 313
           ++DMY +  CL  A + F  + E D I+WN++I G    G  E  L +F++M+      +
Sbjct: 319 LIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLD 378

Query: 314 CFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC----------- 362
            F   +I+  C+     S G+ +H   ++ G+  +  + NA+I MYAKC           
Sbjct: 379 EFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFR 438

Query: 363 --------------------GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
                               G+I  ++  F  M +R++VTW SM+  Y  +G  +E ++L
Sbjct: 439 LMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKL 498

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           +  M  +GV+PD I F   + AC+   +V  G++       + ++ N  +   +V +  R
Sbjct: 499 YVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYSR 558

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518
            G +KEA     S+  K D   W  +L A  ++ L        ++V+D   +M+ T
Sbjct: 559 CGLIKEAKNTFDSIDDK-DLISWNAMLAAFAQNGL-------GIKVIDTFEDMLKT 606



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 138/518 (26%), Positives = 237/518 (45%), Gaps = 80/518 (15%)

Query: 126 KSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS---------------------- 163
           KS   A  +H   I  GL+ S+++ N+L+ +Y+ C ++                      
Sbjct: 22  KSPHIARKLHAQLILSGLDSSLFLLNNLLHMYSNCGLTHDAFQVFQETHHRNIFTWNTMI 81

Query: 164 --------MDNARLVFNDM--KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE----G 209
                   M +A  +F++M  + K+ VSWTT+I+GY+ +G        F  M+ +    G
Sbjct: 82  RALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSLMIRDTNDGG 141

Query: 210 VEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR-------- 261
              +P+SF+  ++AC S G       +HA V K GFG    + NS++ MY +        
Sbjct: 142 KNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLAE 201

Query: 262 ---FD-------CLSD-------------ANQYFDEMTEKDLITWNTIIAGYEKSG-SSE 297
              FD       C +              A Q F+ M E+D ++WNT+I+ + + G   +
Sbjct: 202 TVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQ 261

Query: 298 CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALID 357
           CL MF +M ++ FSPN  T+ S+++ACA+ + L  G  +HA I+R     +L   N LID
Sbjct: 262 CLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLDLVFGNGLID 321

Query: 358 MYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIV 417
           MYAKCG +  ++++F  + + D ++W S++ G    G G++A+ LF++M +S V  D  +
Sbjct: 322 MYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFI 381

Query: 418 FMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMP 477
              +L  CS       G           +  +  +   ++ +  + G   +A  + + MP
Sbjct: 382 LPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMP 441

Query: 478 FKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM-MGTYIILSNIYAAEGKWEEFA 536
            +   S W  ++ A    R  ++GK  A    D+ P   + T+  + + Y   G  EE  
Sbjct: 442 LRNTIS-WTAMITAFS--RSGDIGK--ARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGL 496

Query: 537 KFRKIMRGMGSKKEVGMSWIEVRDKV--CGFIANDKMG 572
           K    MR  G + +    WI     +  C  +A  K+G
Sbjct: 497 KLYVSMRSNGVQPD----WITFTTSIRACADLAIVKLG 530



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 174/376 (46%), Gaps = 34/376 (9%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +    LI  Y   G ++ A+ +F  + E D +SW  +I G   F     A  +F +M R+
Sbjct: 314 VFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRS 373

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V  + F L ++L  C G    S   L+HG  IK G+  S  V N+++ +YA C    D 
Sbjct: 374 SVVLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCG-DTDK 432

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSG-----------------------------NGYG 197
           A LVF  M  +N +SWT +IT ++ SG                             NG+ 
Sbjct: 433 ADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFS 492

Query: 198 --GLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSI 255
             GL ++  M   GV+ +  +F+ ++RACA    V  G  +     K G   N+ V NSI
Sbjct: 493 EEGLKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVANSI 552

Query: 256 LDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNC 314
           + MY R   + +A   FD + +KDLI+WN ++A + ++G   + ++ F  M      PN 
Sbjct: 553 VTMYSRCGLIKEAKNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFEDMLKTECKPNH 612

Query: 315 FTFTSIIAACATLAALSCGQQVHAGIVRR-GLDGNLALANALIDMYAKCGNISDSQKIFS 373
            ++ S+++ C+ +  ++ G+     + R  G+       + ++D+  + G +  ++ +  
Sbjct: 613 ISYVSVLSGCSHMGLVAEGKHYFDSMTRVFGISPTNEHFSCMVDLLGRAGLLEQAKDLIE 672

Query: 374 EMSDRDLVTWTSMMIG 389
            M  +   T  S ++G
Sbjct: 673 GMPFKPNATVWSALLG 688



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 153/335 (45%), Gaps = 37/335 (11%)

Query: 40  LIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTV 99
           L+P   +I  T +I ++   G I +AR  FD MPER++V+W  M++ Y       +   +
Sbjct: 439 LMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKL 498

Query: 100 FVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
           +V M  N V P+  T ++ ++AC  +  +     V   A K GL  ++ V NS++ +Y+ 
Sbjct: 499 YVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYSR 558

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
           C + +  A+  F+ +  K+ +SW  ++  +A +G G   +  F++ML    + N  S+  
Sbjct: 559 CGL-IKEAKNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFEDMLKTECKPNHISYVS 617

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
            +  C+  G V+ G        KH F S   V             +S  N++F  M   D
Sbjct: 618 VLSGCSHMGLVAEG--------KHYFDSMTRVFG-----------ISPTNEHFSCMV--D 656

Query: 280 LITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           L+    ++         +  ++   M    F PN   +++++ +C     L   +     
Sbjct: 657 LLGRAGLL--------EQAKDLIEGMP---FKPNATVWSALLGSCRVHHDLRLAETAAKK 705

Query: 340 IVRRGLDGNLALANALIDMYAKCG---NISDSQKI 371
           ++   ++G+      L +MY++ G   N++D +K+
Sbjct: 706 LMELDVEGSEGYV-LLSNMYSESGELDNVADMRKL 739


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 183/504 (36%), Positives = 293/504 (58%), Gaps = 3/504 (0%)

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           E+ P      S++ AC   K+L+ A  +H    +  L G  ++ NSL+ +Y  C  ++ +
Sbjct: 55  ELAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCG-AVSD 113

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR VF+ M  ++ VSWT LI GYA +      +G+  +ML      N ++F+  ++A  +
Sbjct: 114 ARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGA 173

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G  S G+ +HA  +K+ +  ++ V +++LDMY R + +  A   FD +  K+ ++WN +
Sbjct: 174 CGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNAL 233

Query: 287 IAGYEKSGSSECLNM-FSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           IAG+ +    E   M F++M+   F    FT++S+ +A A + AL  G+ VHA +++ G 
Sbjct: 234 IAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQ 293

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
                + N ++ MYAK G++ D++K+F  M  RDLVTW +M+     +G GKEA+  F+E
Sbjct: 294 KLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEE 353

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           + K G++ ++I F++VLTACSH GLV EG  YF  M DYNV P  + Y   VDLLGRAG 
Sbjct: 354 IRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKDYNVQPEIDHYVSFVDLLGRAGL 413

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           +KEA   +  MP +P  +VWG LLGAC+ H+   +G+ AA  V +L P+  G  ++L NI
Sbjct: 414 LKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVLLYNI 473

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           YA+ GKW + A+ RK+M+  G KKE   SW+++ + V  F+A+D     +  +Y + E +
Sbjct: 474 YASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRMWEEI 533

Query: 586 IRHMNETAYEPDI-DCLIHDLEGE 608
              + +  Y P+    L+H  E E
Sbjct: 534 NMRIKKAGYVPNTAHVLLHINEQE 557



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/302 (34%), Positives = 159/302 (52%), Gaps = 13/302 (4%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G + L  +LI  Y   G + +AR +FD+MP RDVVSWT +IAGY       +A  +  +M
Sbjct: 93  GDAFLLNSLIHMYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDM 152

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           +R    PN FT +S+LKA       S    +H +A+K   +  +YV ++L+D+YA  C  
Sbjct: 153 LRARFRPNGFTFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYAR-CEQ 211

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           MD A +VF+ +  KN+VSW  LI G+A   +G   L  F EM   G     +++S    A
Sbjct: 212 MDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSA 271

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
            A  G +  G+ +HA +IK G      V N++L MY +   + DA + FD M ++DL+TW
Sbjct: 272 FARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTW 331

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           NT++    + G   E +  F +++      N  TF S++ AC+           H G+V+
Sbjct: 332 NTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACS-----------HGGLVK 380

Query: 343 RG 344
            G
Sbjct: 381 EG 382



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 134/284 (47%), Gaps = 15/284 (5%)

Query: 294 GSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353
            SS  L     + +   +P    + SIIAACA    L+  + +HA + R  L G+  L N
Sbjct: 40  ASSTGLRELDLLHAGELAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLN 99

Query: 354 ALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP 413
           +LI MY KCG +SD++ +F +M  RD+V+WT ++ GY  +    EAI L  +M+++  RP
Sbjct: 100 SLIHMYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRP 159

Query: 414 DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELI 473
           +   F ++L A    G    G +       YN + +  +   ++D+  R  ++  A  + 
Sbjct: 160 NGFTFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVF 219

Query: 474 KSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG-TYIILSNIYAAEGKW 532
             +  K +E  W  L+           G+   ++  +++ N  G T+   S++++A    
Sbjct: 220 DRLVSK-NEVSWNALIAGFAR---KADGETTLMKFAEMQRNGFGATHFTYSSMFSA---- 271

Query: 533 EEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQ 576
             FA+   + +G    + V    I+   K+  F+ N  +G + +
Sbjct: 272 --FARIGALEQG----RWVHAHLIKSGQKLTAFVGNTMLGMYAK 309


>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
 gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 184/561 (32%), Positives = 319/561 (56%), Gaps = 4/561 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++   L+  Y     + +AR LFD MP+ D+V W  MI GY      + A  +F EM+  
Sbjct: 147 LVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIGGYVQNGFMDDASMLFNEMISA 206

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + P++ T +S L +     SL     +HG  ++ G+   +Y+ ++L+D+Y  C  ++  
Sbjct: 207 GIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVILDVYLNSALIDLYFKCRDAVMA 266

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
            ++ FN     + V +T +I+GY  +G     L +F+ +L + +  N  +FS  + ACA 
Sbjct: 267 CKM-FNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACAG 325

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  G+ +H  +IK+      PV ++I++MY +   L  A+  F  ++ KD I WN+I
Sbjct: 326 LAAIKLGRELHGYIIKNELEEKCPVGSAIMNMYAKCGRLDLAHLIFGRISIKDAICWNSI 385

Query: 287 IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I  + + G   E + +F +M  E    +C T ++ ++ACA + AL  G+++H  +++   
Sbjct: 386 ITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAALSACANIPALHYGKEIHGFMIKGAF 445

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           + +L   +ALI+MYAKCG ++ ++ +F+ M +++ V W S++  YG HG+  +++ LF  
Sbjct: 446 ESDLFDMSALINMYAKCGKLNIARLVFNLMQEKNEVAWNSIIAAYGYHGYLADSLALFHN 505

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAG 464
           M++ G++PD I F+ +L++C HAG V++G++YF+ M + Y +    E Y C+ DL GRAG
Sbjct: 506 MLEEGIQPDHITFLTILSSCGHAGQVEDGVRYFRCMTEEYGIPAQMEHYACMADLFGRAG 565

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
            + EA+E+I SMPF P  SVWG LLGAC+ H    L ++A+  +LDL+P   G Y++L++
Sbjct: 566 HLDEAFEVITSMPFPPAASVWGTLLGACRVHGNVELAEVASRYLLDLEPKNSGYYLLLTH 625

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           + A  GKW    K + +M+  G +K  G SWIEV +  C F A D     +  +Y +L+ 
Sbjct: 626 VLADAGKWRSVHKIQHLMKERGVQKVPGCSWIEVNNTTCVFFAADGSHPESPQIYSLLKS 685

Query: 585 LIRHMNETAYEPD-IDCLIHD 604
           L+  + +  Y P  + C  +D
Sbjct: 686 LLLELRKVGYVPQAVACFGND 706



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 134/490 (27%), Positives = 258/490 (52%), Gaps = 17/490 (3%)

Query: 16  HKIPPIIK--QSLQSVKKSSIQSDPPLIPKGPSI---LATNLIKSYFDEGLIEEARTLFD 70
           +  PP+IK    L +V+   +  D  ++  G  +   +A++LIK Y D G IE+AR  FD
Sbjct: 11  YTFPPVIKCCTGLNNVRLGKVIQDM-ILEMGFDLDMFVASSLIKLYADNGCIEDARRFFD 69

Query: 71  EMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSN 130
           +M ++D V W VMI GY      + A  +F +M+ +E  P++ T + VL        +  
Sbjct: 70  KMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSEAMVEY 129

Query: 131 AALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYA 190
              +HG+ ++ GL+    V N+L+ VY+     + +AR +F+ M   + V W  +I GY 
Sbjct: 130 GRQLHGLVVRSGLDFVPLVGNTLVTVYSK-GRQLGDARKLFDMMPQIDLVVWNRMIGGYV 188

Query: 191 HSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLP 250
            +G       +F EM+  G++ +  +F+  + + A +  +   K IH  +++HG   ++ 
Sbjct: 189 QNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVILDVY 248

Query: 251 VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSER 309
           + ++++D+Y +      A + F+  T+ D++ +  +I+GY  +G + + L +F  +  ++
Sbjct: 249 LNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKK 308

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
             PN  TF+SI+ ACA LAA+  G+++H  I++  L+    + +A+++MYAKCG +  + 
Sbjct: 309 MIPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEEKCPVGSAIMNMYAKCGRLDLAH 368

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
            IF  +S +D + W S++  +   G  +EAI LF +M   GV+ D +   A L+AC++  
Sbjct: 369 LIFGRISIKDAICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAALSACANI- 427

Query: 430 LVDEGLKYFKSMNDYNVNPNKEI----YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVW 485
                L Y K ++ + +    E        ++++  + G++  A  L+ ++  + +E  W
Sbjct: 428 ---PALHYGKEIHGFMIKGAFESDLFDMSALINMYAKCGKLNIA-RLVFNLMQEKNEVAW 483

Query: 486 GPLLGACKEH 495
             ++ A   H
Sbjct: 484 NSIIAAYGYH 493



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 109/397 (27%), Positives = 212/397 (53%), Gaps = 13/397 (3%)

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA-TCCISMDN 166
           V P+ +T   V+K C G+ ++    ++  M ++ G +  ++V +SL+ +YA   CI  ++
Sbjct: 6   VFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCI--ED 63

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR  F+ M  K+ V W  +I GY   G     + +FK+M+    + +  +F+  +    S
Sbjct: 64  ARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCS 123

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              V +G+ +H  V++ G      V N+++ +Y +   L DA + FD M + DL+ WN +
Sbjct: 124 EAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRM 183

Query: 287 IAGYEKSGSSECLNM-FSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I GY ++G  +  +M F++M S    P+  TFTS + + A  ++L   +++H  IVR G+
Sbjct: 184 IGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGV 243

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             ++ L +ALID+Y KC +   + K+F+  +  D+V +T+M+ GY  +G  K+A+E+F  
Sbjct: 244 ILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRW 303

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE----IYGCVVDLLG 461
           +++  + P+ + F ++L AC  AGL    +K  + ++ Y +    E    +   ++++  
Sbjct: 304 LLQKKMIPNALTFSSILPAC--AGLA--AIKLGRELHGYIIKNELEEKCPVGSAIMNMYA 359

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLP 498
           + GR+  A+ +   +  K D   W  ++ +  +   P
Sbjct: 360 KCGRLDLAHLIFGRISIK-DAICWNSIITSFSQDGKP 395



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 80/256 (31%), Positives = 140/256 (54%), Gaps = 10/256 (3%)

Query: 205 MLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264
           ML  GV  + Y+F   ++ C     V  GK+I   +++ GF  ++ V +S++ +Y    C
Sbjct: 1   MLGCGVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGC 60

Query: 265 LSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAA 323
           + DA ++FD+M +KD + WN +I GY + G S+  + +F  M S    P+  TF  +++ 
Sbjct: 61  IEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSI 120

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTW 383
             + A +  G+Q+H  +VR GLD    + N L+ +Y+K   + D++K+F  M   DLV W
Sbjct: 121 SCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVW 180

Query: 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND 443
             M+ GY  +G   +A  LF+EM+ +G++PD I F + L + + +      LK  K ++ 
Sbjct: 181 NRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAES----SSLKQIKEIHG 236

Query: 444 YNVNPNKEIYGCVVDL 459
           Y V      +G ++D+
Sbjct: 237 YIVR-----HGVILDV 247


>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
          Length = 843

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 201/595 (33%), Positives = 315/595 (52%), Gaps = 57/595 (9%)

Query: 68  LFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKS 127
            F  MPE++ VSW+ +IAG    +       +F EM +  V  +  T +SV ++C G+ +
Sbjct: 231 FFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSA 290

Query: 128 LSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLIT 187
           L   + +HG A+K      + +  + +D+Y  C  ++ +A+ +FN +   N  S+  +I 
Sbjct: 291 LRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCN-NLSDAQKLFNSLPNHNLQSYNAIIV 349

Query: 188 GYAHSGNGYGG-----LGVFKEML-----LEGVEMNPYSFS------------------- 218
           GYA S  G G       G F+        LEG++++  S                     
Sbjct: 350 GYARSDKGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGK 409

Query: 219 --IAVRAC------ASTGWVSFGKLI-----------------HAAVIKHGFGSNLPVMN 253
               V AC       S   VS+  +I                 H  +IK   G +  V  
Sbjct: 410 CGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFIHNRIIKSRLGLDSFVGI 469

Query: 254 SILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE-KSGSSECLNMFSKMKSERFSP 312
           +++DMY +   +  A +  D + E+ +++WN II+G+  +  S E    FSKM      P
Sbjct: 470 ALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDP 529

Query: 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIF 372
           + FT+ +I+  CA L  +  G+Q+HA I+++ L  +  +++ L+DMY+KCGN+ D Q IF
Sbjct: 530 DNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIF 589

Query: 373 SEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD 432
            +  +RD VTW +M+ GY  HG G+EA+++F+ M    V+P+   F+AVL AC H GLV+
Sbjct: 590 EKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVE 649

Query: 433 EGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
           +GL YF SM ++Y ++P  E Y CVVD++GR+G+V +A ELI+ MPF+ D  +W  LL  
Sbjct: 650 KGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSI 709

Query: 492 CKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEV 551
           CK H    + + AA  +L L+P     Y++LSNIYA  G W E  K RK+MR  G KKE 
Sbjct: 710 CKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEP 769

Query: 552 GMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
           G SWIE++ +V  F+  DK    ++ +Y  L++L   M    Y PD D +++D E
Sbjct: 770 GCSWIEIKSEVHAFLVGDKAHPRSKEIYENLDVLTDEMKWVGYMPDTDFILNDDE 824



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 141/500 (28%), Positives = 250/500 (50%), Gaps = 22/500 (4%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P+  ++    ++  Y   G I  A+ LFD MPERDVVSW  +I+GY     H +   VF
Sbjct: 103 MPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVF 162

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
           ++M R     +  T + VLK+C  ++       +HG+A+K G +  +   ++L+D+YA C
Sbjct: 163 LQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKC 222

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
              +D +   F+ M  KN VSW+ +I G   + +  GGL +FKEM   GV ++  +F+  
Sbjct: 223 -KKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASV 281

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
            R+CA    +  G  +H   +K  FG+++ +  + LDMY + + LSDA + F+ +   +L
Sbjct: 282 FRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNL 341

Query: 281 ITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
            ++N II GY +S     L+  S              +    ACA +     G QVH   
Sbjct: 342 QSYNAIIVGYARSDKGLGLDEVS-------------LSGAFRACAVIKGDLEGLQVHGLS 388

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           ++     N+ +ANA++DMY KCG + ++  +F EM  RD V+W +++  +  +G+ ++ +
Sbjct: 389 MKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTL 448

Query: 401 ELF--DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYN-VNPNKEIYGCVV 457
            LF  + ++KS +  D  V +A++   S  G++++  K    + +   V+ N  I G   
Sbjct: 449 SLFIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISG--F 506

Query: 458 DLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG 517
            L  ++   ++ +  +  M   PD   +  +L  C       LGK    +++  K     
Sbjct: 507 SLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIK-KELQSD 565

Query: 518 TYI--ILSNIYAAEGKWEEF 535
            YI   L ++Y+  G  ++F
Sbjct: 566 AYISSTLVDMYSKCGNMQDF 585



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 185/414 (44%), Gaps = 48/414 (11%)

Query: 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFND 173
           T S + + C   K+L      H   I    + +++V N L+ +Y  C   ++ A  VF+ 
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCS-DLEFAFKVFDG 102

Query: 174 MKWKNDVSWTTL-------------------------------ITGYAHSGNGYGGLGVF 202
           M  ++ VSW  +                               I+GY H+G+    + VF
Sbjct: 103 MPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVF 162

Query: 203 KEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRF 262
            +M   G   +  +F++ +++C+S      G  IH   +K GF  ++   +++LDMY + 
Sbjct: 163 LQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKC 222

Query: 263 DCLSDANQYFDEMTEKDLITWNTIIAG-YEKSGSSECLNMFSKMKSERFSPNCFTFTSII 321
             L  + Q+F  M EK+ ++W+ IIAG  +       L +F +M+      +  TF S+ 
Sbjct: 223 KKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVF 282

Query: 322 AACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLV 381
            +CA L+AL  G Q+H   ++     ++ +  A +DMY KC N+SD+QK+F+ + + +L 
Sbjct: 283 RSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQ 342

Query: 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441
           ++ ++++GY                   G+  D +       AC+      EGL+     
Sbjct: 343 SYNAIIVGYARS--------------DKGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLS 388

Query: 442 NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
                  N  +   ++D+ G+ G + EA  + + M  + D   W  ++ A +++
Sbjct: 389 MKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSR-DAVSWNAIIAAHEQN 441



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 132/254 (51%), Gaps = 3/254 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S +   LI  Y   G++E+A  L D + E+ VVSW  +I+G++      +A   F +M+ 
Sbjct: 465 SFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLE 524

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             V+P+ FT +++L  C  + ++     +H   IK+ L+   Y+ ++L+D+Y+ C  +M 
Sbjct: 525 MGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCG-NMQ 583

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           + +L+F     ++ V+W  ++ GYA  G G   L +F+ M LE V+ N  +F   +RAC 
Sbjct: 584 DFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACG 643

Query: 226 STGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLITW 283
             G V  G    H+ +  +G    L   + ++D+  R   +S A +  + M  E D + W
Sbjct: 644 HMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIW 703

Query: 284 NTIIAGYEKSGSSE 297
            T+++  +  G+ E
Sbjct: 704 RTLLSICKIHGNVE 717



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 77/174 (44%), Gaps = 11/174 (6%)

Query: 23  KQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTV 82
           KQ    + K  +QSD        + +++ L+  Y   G +++ + +F++ P RD V+W  
Sbjct: 551 KQIHAQIIKKELQSD--------AYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNA 602

Query: 83  MIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAA-LVHGMAIKE 141
           M+ GY       +A  +F  M    V PN  T  +VL+AC  M  +       H M    
Sbjct: 603 MVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNY 662

Query: 142 GLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND-VSWTTLITGYAHSGN 194
           GL+  +   + ++D+       +  A  +   M ++ D V W TL++     GN
Sbjct: 663 GLDPQLEHYSCVVDIMGRSG-QVSKALELIEGMPFEADAVIWRTLLSICKIHGN 715


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 185/500 (37%), Positives = 295/500 (59%), Gaps = 8/500 (1%)

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           ++ T S ++K C   +++    L+       G +  +++ N L+++Y    + +++A  +
Sbjct: 12  DSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNL-LNDAHQL 70

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F+ M  +N +SWTT+I+ Y+        L +   ML +GV  N Y++S  +RAC     V
Sbjct: 71  FDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRACNGMSDV 130

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
              +++H  +IK G  S++ V ++++D++ +     DA   FDEM   D I WN+II G+
Sbjct: 131 ---RMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGF 187

Query: 291 EKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
            ++  S+  L +F +MK   F     T TS++ AC  LA L  G Q H  IV+   D +L
Sbjct: 188 AQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDL 245

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
            L NAL+DMY KCG++ D++++F++M +RD++TW++M+ G   +G+ +EA++LF+ M  S
Sbjct: 246 ILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFELMKSS 305

Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKE 468
           G +P+ I  + VL ACSHAGL+++G  YF+SM   Y +NP +E YGC++DLLG+AG++ +
Sbjct: 306 GTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREHYGCMIDLLGKAGKLDD 365

Query: 469 AYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA 528
           A +L+  M  +PD   W  LLGAC+  R   L + AA +V+ L P   GTY +LSNIYA 
Sbjct: 366 AVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTVLSNIYAN 425

Query: 529 EGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRH 588
             KW+   + RK MR +G KKE G SWIEV  ++  FI  D+       V   L  LI  
Sbjct: 426 SQKWDSVEEIRKRMRDIGIKKEPGCSWIEVNKQIHAFIIGDESHPQIVEVNKKLNQLIHR 485

Query: 589 MNETAYEPDIDCLIHDLEGE 608
           +    Y P+ + ++ DLEGE
Sbjct: 486 LIGIGYVPETNFVLQDLEGE 505



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 116/343 (33%), Positives = 190/343 (55%), Gaps = 9/343 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L   LI  Y    L+ +A  LFD+MP+R+V+SWT MI+ Y+    H +A  + V M+R+ 
Sbjct: 50  LVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDG 109

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V PN +T SSVL+AC GM   S+  ++H   IKEGLE  +YV ++L+DV+A      ++A
Sbjct: 110 VRPNVYTYSSVLRACNGM---SDVRMLHCGIIKEGLESDVYVRSALIDVFAKLG-EPEDA 165

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             VF++M   + + W ++I G+A +      L +FK M   G      + +  +RAC   
Sbjct: 166 LSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGL 225

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  G   H  ++K  +  +L + N+++DMYC+   L DA + F++M E+D+ITW+T+I
Sbjct: 226 ALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMI 283

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR-RGL 345
           +G  ++G S E L +F  MKS    PN  T   ++ AC+    L  G      + +  G+
Sbjct: 284 SGLAQNGYSQEALKLFELMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGI 343

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMM 387
           +        +ID+  K G + D+ K+ +EM  + D VTW +++
Sbjct: 344 NPGREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLL 386



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 195/399 (48%), Gaps = 38/399 (9%)

Query: 209 GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDA 268
           G+  +  ++S  ++ C S   V  G LI   +  +G    + ++N +++MY +F+ L+DA
Sbjct: 8   GLWADSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNLLNDA 67

Query: 269 NQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATL 327
           +Q FD+M ++++I+W T+I+ Y K     + L +   M  +   PN +T++S++ AC  +
Sbjct: 68  HQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRACNGM 127

Query: 328 AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMM 387
           + +   + +H GI++ GL+ ++ + +ALID++AK G   D+  +F EM   D + W S++
Sbjct: 128 SDV---RMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSII 184

Query: 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN 447
            G+  +     A+ELF  M ++G   ++    +VL AC+   L++ G++    +  Y  +
Sbjct: 185 GGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKY--D 242

Query: 448 PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALR 507
            +  +   +VD+  + G +++A  +   M  + D   W  ++    +    N     AL+
Sbjct: 243 QDLILNNALVDMYCKCGSLEDARRVFNQMK-ERDVITWSTMISGLAQ----NGYSQEALK 297

Query: 508 VLDL------KPN---MMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEV 558
           + +L      KPN   ++G     S+    E  W  F   +K+  G+   +E     I++
Sbjct: 298 LFELMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLY-GINPGREHYGCMIDL 356

Query: 559 RDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPD 597
             K                  G L+  ++ +NE   EPD
Sbjct: 357 LGKA-----------------GKLDDAVKLLNEMECEPD 378



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 72/156 (46%), Gaps = 31/156 (19%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           IL   L+  Y   G +E+AR +F++M ERDV++W+ MI+G        +A  +F  M  +
Sbjct: 246 ILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFELMKSS 305

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT------- 159
              PN  T+  VL AC      S+A L         LE   Y   S+  +Y         
Sbjct: 306 GTKPNYITIVGVLFAC------SHAGL---------LEDGWYYFRSMKKLYGINPGREHY 350

Query: 160 -CCI-------SMDNARLVFNDMKWKND-VSWTTLI 186
            C I        +D+A  + N+M+ + D V+W TL+
Sbjct: 351 GCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLL 386


>gi|6016735|gb|AAF01561.1|AC009325_31 hypothetical protein [Arabidopsis thaliana]
          Length = 641

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 188/568 (33%), Positives = 326/568 (57%), Gaps = 12/568 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV-RN 106
           + ++LI  Y   G + EA  +FDE+ + D+V+W+ M++G+       QA   F  MV  +
Sbjct: 79  VGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMAS 138

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           +V P+  TL +++ AC  + +      VHG  I+ G    + + NSL++ YA    +   
Sbjct: 139 DVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKS-RAFKE 197

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  +F  +  K+ +SW+T+I  Y  +G     L VF +M+ +G E N  +    ++ACA+
Sbjct: 198 AVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAA 257

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  G+  H   I+ G  + + V  +++DMY +     +A   F  +  KD+++W  +
Sbjct: 258 AHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVAL 317

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFS-PNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           I+G+  +G +   +  FS M  E  + P+      ++ +C+ L  L   +  H+ +++ G
Sbjct: 318 ISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIKYG 377

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
            D N  +  +L+++Y++CG++ ++ K+F+ ++ +D V WTS++ GYG HG G +A+E F+
Sbjct: 378 FDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKALETFN 437

Query: 405 EMVKSG-VRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGR 462
            MVKS  V+P+ + F+++L+ACSHAGL+ EGL+ FK M NDY + PN E Y  +VDLLGR
Sbjct: 438 HMVKSSEVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVNDYRLAPNLEHYAVLVDLLGR 497

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
            G +  A E+ K MPF P   + G LLGAC+ H+   + +  A ++ +L+ N  G Y+++
Sbjct: 498 VGDLDTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAETVAKKLFELESNHAGYYMLM 557

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           SN+Y  +G+WE   K R  ++  G KK +  S IE+R KV  F+A+D++    + VYG+L
Sbjct: 558 SNVYGVKGEWENVEKLRNSVKQRGIKKGLAESLIEIRRKVHRFVADDELHPEKEPVYGLL 617

Query: 583 EMLIRHMNETAYEPDID-CLIHDLEGET 609
           + L  HM E     D++ C+  + EG++
Sbjct: 618 KELDLHMKE-----DLENCVYFEYEGDS 640



 Score =  214 bits (546), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 118/422 (27%), Positives = 227/422 (53%), Gaps = 6/422 (1%)

Query: 72  MPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNA 131
           M +R +  W  ++   +      +    F  M R+E  P+ FTL   LKAC  ++ ++  
Sbjct: 1   MTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELREVNYG 60

Query: 132 ALVHGMAIKEGLEGS-IYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYA 190
            ++HG   K+   GS +YV +SL+ +Y  C   ++  R+ F++++  + V+W+++++G+ 
Sbjct: 61  EMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRM-FDELEKPDIVTWSSMVSGFE 119

Query: 191 HSGNGYGGLGVFKEMLLEG-VEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNL 249
            +G+ Y  +  F+ M++   V  +  +    V AC        G+ +H  VI+ GF ++L
Sbjct: 120 KNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDL 179

Query: 250 PVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSE 308
            ++NS+L+ Y +     +A   F  + EKD+I+W+T+IA Y ++G ++E L +F+ M  +
Sbjct: 180 SLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDD 239

Query: 309 RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDS 368
              PN  T   ++ ACA    L  G++ H   +R+GL+  + ++ AL+DMY KC +  ++
Sbjct: 240 GTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEA 299

Query: 369 QKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM-VKSGVRPDRIVFMAVLTACSH 427
             +FS +  +D+V+W +++ G+  +G    +IE F  M +++  RPD I+ + VL +CS 
Sbjct: 300 YAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSE 359

Query: 428 AGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGP 487
            G +++   +   +  Y  + N  I   +V+L  R G +  A ++   +  K D  VW  
Sbjct: 360 LGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALK-DTVVWTS 418

Query: 488 LL 489
           L+
Sbjct: 419 LI 420


>gi|224132434|ref|XP_002328268.1| predicted protein [Populus trichocarpa]
 gi|222837783|gb|EEE76148.1| predicted protein [Populus trichocarpa]
          Length = 749

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 187/536 (34%), Positives = 312/536 (58%), Gaps = 9/536 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S +  +L+  Y D  + E AR LFDEM E+DV++W+VMI GY  +        +F +MV 
Sbjct: 184 SSVQNSLLSMYVDADM-ECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVL 242

Query: 106 NE-VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
              + P+   + SVLKAC   + +    LVHG+ I  G +  ++VENSL+D+Y+ C    
Sbjct: 243 VPGIEPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKC-KDA 301

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
            +A  VFN++  +N+VSW ++++G+  + N      +   M  E VE +  +    ++ C
Sbjct: 302 GSAFKVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQIC 361

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
                    K IH  +I+ G  +N  V+++++D Y +   +  A + F  M  +D+++W+
Sbjct: 362 KYFVHPFHCKSIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWS 421

Query: 285 TIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           T+I+G+   G   E + ++ +M  +   PN  T  +++ AC+  A L   +  H   +R+
Sbjct: 422 TMISGFAHCGKPDEAIAVYQEMDRDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIRQ 481

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G    + +  A++DMY+KCG I  S++ F +++ +++VTW++M+  YG +G   EA+ LF
Sbjct: 482 GFASEVTVGTAVVDMYSKCGEILASRRAFDQLALKNIVTWSAMIAAYGMNGLAHEALALF 541

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGR 462
            EM + G++P+ +  ++VL ACSH GLV+EGL  FKSM  +  + P  E Y C+VD+LGR
Sbjct: 542 AEMKRHGLKPNPVTTLSVLAACSHGGLVEEGLSLFKSMVQELGLEPGFEHYSCMVDMLGR 601

Query: 463 AGRVKEAYELIKSMP--FKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520
           AG++  A E+IK+MP   K   S+WG LL AC+ + L  LGK A  RVL+L+P+    Y+
Sbjct: 602 AGKLDTAIEVIKAMPHNLKNGASIWGSLLSACRSYGLTELGKEAISRVLELEPSNSAGYL 661

Query: 521 ILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQ 576
           + S++YAA+G W++ A+ R + +  G K   G S + + +K C F+A D  GSH +
Sbjct: 662 VASSMYAADGLWDDAARIRVLAKEKGVKVVAGYSLVHIDNKACRFVAGD--GSHPR 715



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 145/540 (26%), Positives = 263/540 (48%), Gaps = 19/540 (3%)

Query: 19  PPIIKQSLQSVKKSSIQSDPPLIPKGP---SILATNLIKSYFDEGLIEEARTLFDEMPE- 74
           PPI+K       +        LI +G    + +  +++  Y   G  + A  +F+ M   
Sbjct: 52  PPILKAWSFLSHRHGKSLHACLIKQGFDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRS 111

Query: 75  RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALV 134
           RD VSW ++I G+            F         PN  T+  V++AC+ + +  +  ++
Sbjct: 112 RDSVSWNILIHGHLDNGALVAGLWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLIL 171

Query: 135 HGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGN 194
           HG  IK G      V+NSL+ +Y      M+ AR +F++M  K+ ++W+ +I GY     
Sbjct: 172 HGYLIKSGFWAISSVQNSLLSMYVDA--DMECARELFDEMHEKDVIAWSVMIGGYLQWEE 229

Query: 195 GYGGLGVFKEM-LLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMN 253
              GL +F++M L+ G+E +       ++ACAS+  V  G+L+H  VI  GF  +L V N
Sbjct: 230 PQVGLQMFRKMVLVPGIEPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVEN 289

Query: 254 SILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE-KSGSSECLNMFSKMKSERFSP 312
           S++DMY +      A + F+E+++++ ++WN++++G+      SE  ++ S M+ ER   
Sbjct: 290 SLIDMYSKCKDAGSAFKVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVET 349

Query: 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIF 372
           +  T  +I+  C         + +H  ++RRG + N  + +ALID YAKC  I  + ++F
Sbjct: 350 DEVTLVNILQICKYFVHPFHCKSIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVF 409

Query: 373 SEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD 432
           + M  RD+V+W++M+ G+   G   EAI ++ EM +  V+P+ I  + +L ACS    V 
Sbjct: 410 ARMRRRDVVSWSTMISGFAHCGKPDEAIAVYQEMDRDLVKPNVITIINLLEACS----VT 465

Query: 433 EGLKYFKSMNDYNVN----PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPL 488
             LK  K  +   +         +   VVD+  + G +  +      +  K +   W  +
Sbjct: 466 AELKRSKWAHGVAIRQGFASEVTVGTAVVDMYSKCGEILASRRAFDQLALK-NIVTWSAM 524

Query: 489 LGACKEHRLPN--LGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546
           + A   + L +  L   A ++   LKPN + T  +L+         E  + F+ +++ +G
Sbjct: 525 IAAYGMNGLAHEALALFAEMKRHGLKPNPVTTLSVLAACSHGGLVEEGLSLFKSMVQELG 584



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 134/450 (29%), Positives = 216/450 (48%), Gaps = 32/450 (7%)

Query: 134 VHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND-VSWTTLITGYAHS 192
           +H   IK+G +    + NS+M  Y  C    D A  VFN M+   D VSW  LI G+  +
Sbjct: 69  LHACLIKQGFDSFTSIGNSIMGFYIRCG-DFDIAVDVFNSMRRSRDSVSWNILIHGHLDN 127

Query: 193 GNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVM 252
           G    GL  F    + G E N  +  + ++AC   G    G ++H  +IK GF +   V 
Sbjct: 128 GALVAGLWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAISSVQ 187

Query: 253 NSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSEC-LNMFSKMK-SERF 310
           NS+L MY   D +  A + FDEM EKD+I W+ +I GY +    +  L MF KM      
Sbjct: 188 NSLLSMYVDAD-MECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGI 246

Query: 311 SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQK 370
            P+     S++ ACA+   +  G+ VH  ++ RG D +L + N+LIDMY+KC +   + K
Sbjct: 247 EPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAFK 306

Query: 371 IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           +F+E+S R+ V+W SM+ G+  + +  EA  L   M K  V  D +  + +L  C     
Sbjct: 307 VFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQIC----- 361

Query: 431 VDEGLKYF------KSMNDYNVN----PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKP 480
                KYF      KS++   +      N+ +   ++D   +   ++ A+E+   M  + 
Sbjct: 362 -----KYFVHPFHCKSIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVFARMR-RR 415

Query: 481 DESVWGPLLGACKEHRLPNLGKLAALRVLD---LKPNMMGTYIILSNI-YAAEGKWEEFA 536
           D   W  ++        P+   +A  + +D   +KPN++    +L      AE K  ++A
Sbjct: 416 DVVSWSTMISGFAHCGKPDEA-IAVYQEMDRDLVKPNVITIINLLEACSVTAELKRSKWA 474

Query: 537 KFRKIMRGMGSKKEVGMSWIEVRDKVCGFI 566
               I +G  S+  VG + +++  K CG I
Sbjct: 475 HGVAIRQGFASEVTVGTAVVDMYSK-CGEI 503


>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
 gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
 gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
 gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
 gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
          Length = 685

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 196/626 (31%), Positives = 325/626 (51%), Gaps = 72/626 (11%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF--- 100
           G + L   L+ +Y   G + +AR +FD MP R+  S+  +++        + A  +F   
Sbjct: 48  GETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAI 107

Query: 101 ----------------------------VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAA 132
                                         M  ++   NA++ +S L AC   K+     
Sbjct: 108 PDPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGE 167

Query: 133 LVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHS 192
            VH +  K      +Y+  +L+D+YA C    + A+ VF+ M  +N VSW +LIT Y  +
Sbjct: 168 QVHALVTKSSHGSDVYIGTALVDMYAKC-ERPEEAQKVFDAMPERNIVSWNSLITCYEQN 226

Query: 193 GNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG-FGSNLPV 251
           G     L +F  M+ +G   +  + +  + ACA       G+ +H  ++K   F  ++ +
Sbjct: 227 GPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVL 286

Query: 252 MNSILDMY----------CRFDCLS---------------------DANQYFDEMTEKDL 280
            N+++DMY          C FD ++                     DA   F +M EK++
Sbjct: 287 NNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQMVEKNV 346

Query: 281 ITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           + WN +IA Y   S   E L +F ++K E   P  +T+ +++ ACA LA L  GQQ H  
Sbjct: 347 VAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQAHVH 406

Query: 340 IVRRGL------DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
           +++ G       + ++ + N+L+DMY K G+ISD  K+F  M+ RD V+W +M++GY  +
Sbjct: 407 VLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGYAQN 466

Query: 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEI 452
           G  K+A+ LF+ M+ S  RPD +  + VL+AC H+GLV EG +YF+SM  D+ + P ++ 
Sbjct: 467 GRAKDALLLFERMLCSNERPDSVTMIGVLSACGHSGLVKEGRRYFQSMTEDHGIIPTRDH 526

Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLK 512
           Y C++DLLGRAG +KE  ELI++MP +PD  +W  LLGAC+ H+  ++G+ AA ++ +L 
Sbjct: 527 YTCMIDLLGRAGHLKEVEELIENMPMEPDAVLWASLLGACRLHKNIDMGEWAAGKLFELD 586

Query: 513 PNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMG 572
           P+  G Y++LSN+YA  GKW +  + R+ M+  G  K+ G SWIE+  KV  F+A D + 
Sbjct: 587 PDNSGPYVLLSNMYAELGKWADVFRVRRSMKHRGVSKQPGCSWIEIGRKVNVFLARDNIH 646

Query: 573 SHTQYVYGVLEMLIRHMNETAYEPDI 598
                ++  L ++   M+  + + +I
Sbjct: 647 PCRNEIHDTLRIIQMQMSRMSIDAEI 672



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 147/323 (45%), Gaps = 37/323 (11%)

Query: 245 FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-------- 296
           F     ++N++L  Y R   L DA + FD M  ++  ++N +++   + G +        
Sbjct: 46  FAGETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFG 105

Query: 297 ------------------------ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSC 332
                                   + L   + M ++ F  N ++F S ++ACA+  A   
Sbjct: 106 AIPDPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRT 165

Query: 333 GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA 392
           G+QVHA + +     ++ +  AL+DMYAKC    ++QK+F  M +R++V+W S++  Y  
Sbjct: 166 GEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQ 225

Query: 393 HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKE 451
           +G   EA+ LF  M+K G  PD +   +V++AC+      EG +    M        +  
Sbjct: 226 NGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMV 285

Query: 452 IYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDL 511
           +   +VD+  + GR  EA  +   M  +   S    + G  K     N+G   A+ +  +
Sbjct: 286 LNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKS---ANVGDAQAVFLQMV 342

Query: 512 KPNMMGTYIILSNIYAAEGKWEE 534
           + N++   ++++  YA   + EE
Sbjct: 343 EKNVVAWNVLIAT-YAHNSEEEE 364



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 38/81 (46%)

Query: 42  PKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFV 101
           P+    +  +L+  Y   G I +   +F+ M  RD VSW  MI GY        A  +F 
Sbjct: 418 PESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALLLFE 477

Query: 102 EMVRNEVNPNAFTLSSVLKAC 122
            M+ +   P++ T+  VL AC
Sbjct: 478 RMLCSNERPDSVTMIGVLSAC 498


>gi|255559826|ref|XP_002520932.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539898|gb|EEF41477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 757

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 188/526 (35%), Positives = 305/526 (57%), Gaps = 6/526 (1%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR-NEVNPNAFTLSSVLKACK 123
           AR LFDEMPE+DV+SW+ MI GY  +        +F +M+  + + P+   L SVLKAC 
Sbjct: 218 ARILFDEMPEKDVISWSAMIGGYVQYLEDQIGLQIFQKMLSTSRITPDGVILVSVLKACA 277

Query: 124 GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWT 183
              +++   LVHG+ I  GL+  ++V+NSL+D+Y+ C     +A  VF++M  +N+VSW 
Sbjct: 278 NSVNITMGRLVHGLTICRGLDSDLFVKNSLIDMYSKC-KDAGSAFEVFSEMPRRNNVSWN 336

Query: 184 TLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH 243
           +L++G   +      L +   M  EG+E +  +    ++ C         K +H A I+ 
Sbjct: 337 SLLSGLILNKKYSEALLLVYSMRTEGIEADEVTLVNCLQICKYFAHPYHCKAVHCATIRR 396

Query: 244 GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMF 302
           G  SN  V+NS++D Y + + +  A + F     +D++ W+T+IAG+   G   E + +F
Sbjct: 397 GCESNEIVLNSLIDAYAKCNLIELAWEVFSRTRRRDVVLWSTMIAGFAHCGKPDEAIAVF 456

Query: 303 SKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362
            KM      PN  T  +++ AC+  A L      H   +RRGL   +A+  A++DMY+KC
Sbjct: 457 QKMNEGIEVPNAVTIINLLQACSVSAELKRSMWAHGAAIRRGLAAEVAVGTAIVDMYSKC 516

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
           G I  S+K F+++  ++++TW++M+  YG +G   EA+ L  +M    ++P+ + +++VL
Sbjct: 517 GEIEASRKAFNQIPQKNIITWSTMIAAYGMNGLAHEALALLAQMKSHEIKPNALTYLSVL 576

Query: 423 TACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMP--FK 479
           TACSH GLV+ GL  FKSM  D+ V+P  E Y C+VD+L RAG++ +A ELI+ MP  F+
Sbjct: 577 TACSHGGLVEMGLSVFKSMIQDHGVDPEFEHYSCMVDMLSRAGKLDDAMELIRMMPETFR 636

Query: 480 PDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFR 539
              SVWG LL AC+ +R   LG+ A  +VL+L+P  +  Y++ S++YA++G W+  A+ +
Sbjct: 637 AGASVWGALLSACRTYRSSTLGEKAVYQVLELEPLNLAGYLLASSMYASDGLWDNAARMK 696

Query: 540 KIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
            + R  G +   G S + V  K   F+A DK  S    ++ +L  L
Sbjct: 697 LLARERGVRAVAGYSIVHVDSKAHKFVAGDKSCSQAGNIHHMLNQL 742



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 122/447 (27%), Positives = 224/447 (50%), Gaps = 7/447 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +  +++  Y   G ++ A ++FD M  RD VSW V+I G   +    +    F+      
Sbjct: 101 IGNSILNFYIKCGELDTAVSVFDSMRSRDSVSWNVLIHGCLDYGALVEGLWQFINARVAG 160

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
             PN  TL  +++AC+ +++      +HG  I+ GL  S  V+NS + +YA   + MD A
Sbjct: 161 FEPNISTLVLLVQACRSLRAKQEGLQLHGYLIQSGLWASWSVQNSFLCMYAD--VDMDCA 218

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI--AVRACA 225
           R++F++M  K+ +SW+ +I GY        GL +F++M L    + P    +   ++ACA
Sbjct: 219 RILFDEMPEKDVISWSAMIGGYVQYLEDQIGLQIFQKM-LSTSRITPDGVILVSVLKACA 277

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           ++  ++ G+L+H   I  G  S+L V NS++DMY +      A + F EM  ++ ++WN+
Sbjct: 278 NSVNITMGRLVHGLTICRGLDSDLFVKNSLIDMYSKCKDAGSAFEVFSEMPRRNNVSWNS 337

Query: 286 IIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +++G       SE L +   M++E    +  T  + +  C   A     + VH   +RRG
Sbjct: 338 LLSGLILNKKYSEALLLVYSMRTEGIEADEVTLVNCLQICKYFAHPYHCKAVHCATIRRG 397

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
            + N  + N+LID YAKC  I  + ++FS    RD+V W++M+ G+   G   EAI +F 
Sbjct: 398 CESNEIVLNSLIDAYAKCNLIELAWEVFSRTRRRDVVLWSTMIAGFAHCGKPDEAIAVFQ 457

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
           +M +    P+ +  + +L ACS +  +   +    +     +     +   +VD+  + G
Sbjct: 458 KMNEGIEVPNAVTIINLLQACSVSAELKRSMWAHGAAIRRGLAAEVAVGTAIVDMYSKCG 517

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGA 491
            ++ + +    +P K +   W  ++ A
Sbjct: 518 EIEASRKAFNQIPQK-NIITWSTMIAA 543



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 161/320 (50%), Gaps = 18/320 (5%)

Query: 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVE---MNPYSFSIAVRACASTGWVSFGKLI 236
           +SWT  I   + +   +  +  + E+   G+    ++   F   ++AC+   ++  GK +
Sbjct: 28  LSWTLRIKELSSNEKWHEVISQYYEITNAGISHHLLDVTLFPPVLKACSYLSYID-GKCL 86

Query: 237 HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS- 295
           HA +IK  F S   + NSIL+ Y +   L  A   FD M  +D ++WN +I G    G+ 
Sbjct: 87  HACLIKTAFDSFTSIGNSILNFYIKCGELDTAVSVFDSMRSRDSVSWNVLIHGCLDYGAL 146

Query: 296 SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
            E L  F   +   F PN  T   ++ AC +L A   G Q+H  +++ GL  + ++ N+ 
Sbjct: 147 VEGLWQFINARVAGFEPNISTLVLLVQACRSLRAKQEGLQLHGYLIQSGLWASWSVQNSF 206

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK-SGVRPD 414
           + MYA   ++  ++ +F EM ++D+++W++M+ GY  +   +  +++F +M+  S + PD
Sbjct: 207 LCMYADV-DMDCARILFDEMPEKDVISWSAMIGGYVQYLEDQIGLQIFQKMLSTSRITPD 265

Query: 415 RIVFMAVLTACSHA-----GLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
            ++ ++VL AC+++     G +  GL   + ++      N      ++D+  +      A
Sbjct: 266 GVILVSVLKACANSVNITMGRLVHGLTICRGLDSDLFVKNS-----LIDMYSKCKDAGSA 320

Query: 470 YELIKSMPFKPDESVWGPLL 489
           +E+   MP + + S W  LL
Sbjct: 321 FEVFSEMPRRNNVS-WNSLL 339



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 116/232 (50%), Gaps = 2/232 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I+  +LI +Y    LIE A  +F     RDVV W+ MIAG+      ++A  VF +M   
Sbjct: 403 IVLNSLIDAYAKCNLIELAWEVFSRTRRRDVVLWSTMIAGFAHCGKPDEAIAVFQKMNEG 462

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
              PNA T+ ++L+AC     L  +   HG AI+ GL   + V  +++D+Y+ C   ++ 
Sbjct: 463 IEVPNAVTIINLLQACSVSAELKRSMWAHGAAIRRGLAAEVAVGTAIVDMYSKCG-EIEA 521

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           +R  FN +  KN ++W+T+I  Y  +G  +  L +  +M    ++ N  ++   + AC+ 
Sbjct: 522 SRKAFNQIPQKNIITWSTMIAAYGMNGLAHEALALLAQMKSHEIKPNALTYLSVLTACSH 581

Query: 227 TGWVSFGKLIHAAVIK-HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE 277
            G V  G  +  ++I+ HG        + ++DM  R   L DA +    M E
Sbjct: 582 GGLVEMGLSVFKSMIQDHGVDPEFEHYSCMVDMLSRAGKLDDAMELIRMMPE 633


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 179/516 (34%), Positives = 305/516 (59%), Gaps = 9/516 (1%)

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
           + ++  E +P+  T   ++  C    SLS+   VH   +  G +   ++   L+ +Y+  
Sbjct: 66  LRVLSQESSPSQQTYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDL 125

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
             S+D AR VF+  + +    W  L      +G+G   LG++ +M   GVE + ++++  
Sbjct: 126 G-SVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYV 184

Query: 221 VRACAST----GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
           ++AC ++      ++ GK IHA + + G+ S++ +M +++DMY RF C+  A+  F+ M 
Sbjct: 185 LKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMP 244

Query: 277 EKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSER--FSPNCFTFTSIIAACATLAALSCG 333
            +++++W+ +IA Y K+G + E L  F +M +E    SPN  T  S++ ACA+LAAL  G
Sbjct: 245 VRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQG 304

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
           + +H  I+RRGLD  L + +AL+ MY +CG +   Q++F  M DRD+V+W S++  YG H
Sbjct: 305 RLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVH 364

Query: 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEI 452
           G+G++AI++F+EM+ +G  P  + F++VL ACSH GLV+EG + F+SM  D+ + P  E 
Sbjct: 365 GYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEH 424

Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLK 512
           Y C+VDLLGRA R+ EA ++++ M  +P   VWG LLG+C+ H    L + A+ R+  L+
Sbjct: 425 YACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALE 484

Query: 513 PNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMG 572
           P   G Y++L++IYA    W+E  + +K++   G +K  G  W+EVR K+  F++ D+  
Sbjct: 485 PKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSMDEFN 544

Query: 573 SHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
              + ++  L  L   M E  Y P    ++++LE E
Sbjct: 545 PLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETE 580



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/359 (27%), Positives = 184/359 (51%), Gaps = 12/359 (3%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            LAT LI  Y D G ++ AR +FD+  +R +  W  +    T      +   ++ +M R 
Sbjct: 113 FLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRI 172

Query: 107 EVNPNAFTLSSVLKACKGMK----SLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-C 161
            V  + FT + VLKAC   +     L+    +H    + G    +Y+  +L+D+YA   C
Sbjct: 173 GVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGC 232

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI-- 219
           +  D A  VFN M  +N VSW+ +I  YA +G  +  L  F+EM+ E  + +P S ++  
Sbjct: 233 V--DYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVS 290

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
            ++ACAS   +  G+LIH  +++ G  S LPV+++++ MY R   L    + FD M ++D
Sbjct: 291 VLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRD 350

Query: 280 LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           +++WN++I+ Y   G   + + +F +M +   SP   TF S++ AC+    +  G+++  
Sbjct: 351 VVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFE 410

Query: 339 GIVR-RGLDGNLALANALIDMYAKCGNISDSQKIFSEM-SDRDLVTWTSMMIGYGAHGH 395
            + R  G+   +     ++D+  +   + ++ K+  +M ++     W S++     HG+
Sbjct: 411 SMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGN 469


>gi|118488304|gb|ABK95971.1| unknown [Populus trichocarpa]
          Length = 749

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 187/536 (34%), Positives = 312/536 (58%), Gaps = 9/536 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S +  +L+  Y D  + E AR LFDEM E+DV++W+VMI GY  +        +F +MV 
Sbjct: 184 SSVQNSLLSMYVDADM-ECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVL 242

Query: 106 NE-VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
              + P+   + SVLKAC   + +    LVHG+ I  G +  ++VENSL+D+Y+ C    
Sbjct: 243 VPGIEPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKC-KDA 301

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
            +A  VFN++  +N+VSW ++++G+  + N      +   M  E VE +  +    ++ C
Sbjct: 302 GSAFKVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQIC 361

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
                    K IH  +I+ G  +N  V+++++D Y +   +  A + F  M  +D+++W+
Sbjct: 362 KYFVHPFHCKSIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWS 421

Query: 285 TIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           T+I+G+   G   E + ++ +M  +   PN  T  +++ AC+  A L   +  H   +R+
Sbjct: 422 TMISGFAHCGKPDEAIAVYQEMDRDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIRQ 481

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G    + +  A++DMY+KCG I  S++ F +++ +++VTW++M+  YG +G   EA+ LF
Sbjct: 482 GFASEVTVGTAVVDMYSKCGEILASRRAFDQLALKNIVTWSAMIAAYGMNGLAHEALALF 541

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGR 462
            EM + G++P+ +  ++VL ACSH GLV+EGL  FKSM  +  + P  E Y C+VD+LGR
Sbjct: 542 AEMKRHGLKPNPVTTLSVLAACSHGGLVEEGLSLFKSMVQELGLEPGFEHYSCMVDMLGR 601

Query: 463 AGRVKEAYELIKSMP--FKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520
           AG++  A E+IK+MP   K   S+WG LL AC+ + L  LGK A  RVL+L+P+    Y+
Sbjct: 602 AGKLDTAIEVIKAMPDNLKNGASIWGSLLSACRSYGLTELGKEAISRVLELEPSNSAGYL 661

Query: 521 ILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQ 576
           + S++YAA+G W++ A+ R + +  G K   G S + + +K C F+A D  GSH +
Sbjct: 662 VASSMYAADGLWDDAARIRVLAKEKGVKVVAGYSLVHIDNKACRFVAGD--GSHPR 715



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 145/540 (26%), Positives = 263/540 (48%), Gaps = 19/540 (3%)

Query: 19  PPIIKQSLQSVKKSSIQSDPPLIPKGP---SILATNLIKSYFDEGLIEEARTLFDEMPE- 74
           PPI+K       +        LI +G    + +  +++  Y   G  + A  +F+ M   
Sbjct: 52  PPILKAWSFLSHRHGKSLHACLIKQGFDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRS 111

Query: 75  RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALV 134
           RD VSW ++I G+            F         PN  T+  V++AC+ + +  +  ++
Sbjct: 112 RDSVSWNILIHGHLDNGALVAGLWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLIL 171

Query: 135 HGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGN 194
           HG  IK G      V+NSL+ +Y      M+ AR +F++M  K+ ++W+ +I GY     
Sbjct: 172 HGYLIKSGFWAISSVQNSLLSMYVDA--DMECARELFDEMHEKDVIAWSVMIGGYLQWEE 229

Query: 195 GYGGLGVFKEM-LLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMN 253
              GL +F++M L+ G+E +       ++ACAS+  V  G+L+H  VI  GF  +L V N
Sbjct: 230 PQVGLQMFRKMVLVPGIEPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVEN 289

Query: 254 SILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE-KSGSSECLNMFSKMKSERFSP 312
           S++DMY +      A + F+E+++++ ++WN++++G+      SE  ++ S M+ ER   
Sbjct: 290 SLIDMYSKCKDAGSAFKVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVET 349

Query: 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIF 372
           +  T  +I+  C         + +H  ++RRG + N  + +ALID YAKC  I  + ++F
Sbjct: 350 DEVTLVNILQICKYFVHPFHCKSIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVF 409

Query: 373 SEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD 432
           + M  RD+V+W++M+ G+   G   EAI ++ EM +  V+P+ I  + +L ACS    V 
Sbjct: 410 ARMRRRDVVSWSTMISGFAHCGKPDEAIAVYQEMDRDLVKPNVITIINLLEACS----VT 465

Query: 433 EGLKYFKSMNDYNVN----PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPL 488
             LK  K  +   +         +   VVD+  + G +  +      +  K +   W  +
Sbjct: 466 AELKRSKWAHGVAIRQGFASEVTVGTAVVDMYSKCGEILASRRAFDQLALK-NIVTWSAM 524

Query: 489 LGACKEHRLPN--LGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546
           + A   + L +  L   A ++   LKPN + T  +L+         E  + F+ +++ +G
Sbjct: 525 IAAYGMNGLAHEALALFAEMKRHGLKPNPVTTLSVLAACSHGGLVEEGLSLFKSMVQELG 584



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 134/450 (29%), Positives = 216/450 (48%), Gaps = 32/450 (7%)

Query: 134 VHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND-VSWTTLITGYAHS 192
           +H   IK+G +    + NS+M  Y  C    D A  VFN M+   D VSW  LI G+  +
Sbjct: 69  LHACLIKQGFDSFTSIGNSIMGFYIRCG-DFDIAVDVFNSMRRSRDSVSWNILIHGHLDN 127

Query: 193 GNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVM 252
           G    GL  F    + G E N  +  + ++AC   G    G ++H  +IK GF +   V 
Sbjct: 128 GALVAGLWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAISSVQ 187

Query: 253 NSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSEC-LNMFSKMK-SERF 310
           NS+L MY   D +  A + FDEM EKD+I W+ +I GY +    +  L MF KM      
Sbjct: 188 NSLLSMYVDAD-MECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGI 246

Query: 311 SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQK 370
            P+     S++ ACA+   +  G+ VH  ++ RG D +L + N+LIDMY+KC +   + K
Sbjct: 247 EPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAFK 306

Query: 371 IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           +F+E+S R+ V+W SM+ G+  + +  EA  L   M K  V  D +  + +L  C     
Sbjct: 307 VFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQIC----- 361

Query: 431 VDEGLKYF------KSMNDYNVN----PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKP 480
                KYF      KS++   +      N+ +   ++D   +   ++ A+E+   M  + 
Sbjct: 362 -----KYFVHPFHCKSIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVFARMR-RR 415

Query: 481 DESVWGPLLGACKEHRLPNLGKLAALRVLD---LKPNMMGTYIILSNI-YAAEGKWEEFA 536
           D   W  ++        P+   +A  + +D   +KPN++    +L      AE K  ++A
Sbjct: 416 DVVSWSTMISGFAHCGKPDEA-IAVYQEMDRDLVKPNVITIINLLEACSVTAELKRSKWA 474

Query: 537 KFRKIMRGMGSKKEVGMSWIEVRDKVCGFI 566
               I +G  S+  VG + +++  K CG I
Sbjct: 475 HGVAIRQGFASEVTVGTAVVDMYSK-CGEI 503


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 197/591 (33%), Positives = 323/591 (54%), Gaps = 36/591 (6%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           ++  +FD   +  A ++F+ + E +++ W  M  G+   +    A  ++V M+   + PN
Sbjct: 33  ILSPHFDG--LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPN 90

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA------------- 158
           ++T   +LK+C   K+      +HG  +K G +  +YV  SL+ +Y              
Sbjct: 91  SYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFD 150

Query: 159 ----------TCCIS-------MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGV 201
                     T  I        ++NA+ +F+++  K+ VSW  +I+GYA +GN    L +
Sbjct: 151 ESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALEL 210

Query: 202 FKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR 261
           FK+M+   V  +  +    V ACA +G +  G+ +H+ +  HGFGSNL ++N+++D+Y +
Sbjct: 211 FKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSK 270

Query: 262 FDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSI 320
              L  A   F+ +  KD+I+WNT+I GY       E L +F +M     +PN  T  SI
Sbjct: 271 CGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSI 330

Query: 321 IAACATLAALSCGQQVHAGIVRR--GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR 378
           + ACA L A+  G+ +H  I +R  G+    +L  +LIDMYAKCG+I  + ++F+ +  +
Sbjct: 331 LPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHK 390

Query: 379 DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYF 438
            L +W +M+ G+  HG    + ++F  M K+G+ PD I F+ +L+ACSH+G++D G   F
Sbjct: 391 SLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIF 450

Query: 439 KSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
           +SM  DY + P  E YGC++DLLG +G  KEA E+I +M  +PD  +W  LL ACK H  
Sbjct: 451 RSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGN 510

Query: 498 PNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIE 557
             LG+  A  ++ ++P   G+Y++LSNIYA  G+W E A  R ++   G KK  G S IE
Sbjct: 511 VELGESFAQNLIKIEPENPGSYVLLSNIYATAGRWNEVANTRALLNDKGMKKVPGCSSIE 570

Query: 558 VRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           +   V  FI  DK     + +YG+LE +   + E  + PD   ++ ++E E
Sbjct: 571 IDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEE 621



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 130/490 (26%), Positives = 230/490 (46%), Gaps = 48/490 (9%)

Query: 42  PKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFV 101
           P    +  T LIK Y   G IE A+ +FDE+P +DVVSW  MI+GY     + +A  +F 
Sbjct: 153 PHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFK 212

Query: 102 EMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
           +M++  V P+  T+ +V+ AC    S+     VH      G   ++ + N+L+D+Y+ C 
Sbjct: 213 DMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCG 272

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
             ++ A  +F  + +K+ +SW TLI GY H       L +F+EML  G   N  +    +
Sbjct: 273 -ELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSIL 331

Query: 222 RACASTGWVSFGKLIHAAVIKH--GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
            ACA  G +  G+ IH  + K   G  +   +  S++DMY +   +  A+Q F+ +  K 
Sbjct: 332 PACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKS 391

Query: 280 LITWNTIIAGYEKSGSSEC-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           L +WN +I G+   G ++   ++FS+M+     P+  TF  +++AC+    L  G+ +  
Sbjct: 392 LSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFR 451

Query: 339 GIVRR-GLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHG 396
            + +   +   L     +ID+    G   +++++ + M  + D V W S++     HG+ 
Sbjct: 452 SMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGN- 510

Query: 397 KEAIELFDEMVKSGVR-----PDRIVFMAVLTAC---------SHAGLVDEGLKYFKSMN 442
              +EL +   ++ ++     P   V ++ + A          + A L D+G+K     +
Sbjct: 511 ---VELGESFAQNLIKIEPENPGSYVLLSNIYATAGRWNEVANTRALLNDKGMKKVPGCS 567

Query: 443 DYNVNP--------------NKEIYG---CVVDLLGRAGRVKEAYELIKSMPFKPDESVW 485
              ++               N+EIYG    +  LL  AG V +  E+++ M     E  W
Sbjct: 568 SIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEM-----EEEW 622

Query: 486 GPLLGACKEH 495
               GA + H
Sbjct: 623 KE--GALRHH 630


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 193/566 (34%), Positives = 325/566 (57%), Gaps = 10/566 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A +LI  Y   G +  AR LFDEMP RD+ SW  MI+GY       +A T+  + +R  
Sbjct: 187 VAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTL-SDGLRA- 244

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
              ++ T+ S+L AC      +    +H  +IK GLE  ++V N L+D+YA    S+ + 
Sbjct: 245 --MDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFG-SLKDC 301

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           + VF+ M  ++ +SW ++I  Y  +      + +F+EM L  ++ +  +        +  
Sbjct: 302 QKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQL 361

Query: 228 GWVSFGKLIHAAVIKHG-FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
           G +   + +    ++ G F  ++ + N+++ MY +   +  A   F+ +  KD+I+WNTI
Sbjct: 362 GEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTI 421

Query: 287 IAGYEKSG-SSECLNMFSKMKSE--RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           I+GY ++G +SE + M++ M+ E    S N  T+ S++ AC+   AL  G ++H  +++ 
Sbjct: 422 ISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKN 481

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           GL  ++ +  +L DMY KCG + D+  +F ++   + V W +++  +G HGHG++A+ LF
Sbjct: 482 GLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLF 541

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGR 462
            EM+  GV+PD I F+ +L+ACSH+GLVDEG   F+ M  DY + P+ + YGC+VDL GR
Sbjct: 542 KEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGR 601

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AG+++ A   IKSMP +PD S+WG LL AC+ H   +LGK+A+  + +++P  +G +++L
Sbjct: 602 AGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLL 661

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           SN+YA+ GKWE   + R I  G G +K  G S +EV +KV  F   ++     + +Y  L
Sbjct: 662 SNMYASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYREL 721

Query: 583 EMLIRHMNETAYEPDIDCLIHDLEGE 608
             L   +    Y PD   ++ D+E +
Sbjct: 722 TALHEKLKMVGYVPDHRFVLQDVEDD 747



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 144/500 (28%), Positives = 262/500 (52%), Gaps = 28/500 (5%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF-VEMVRN 106
           ++  L+  Y   G +  AR  FD +  RDV +W +MI+GY      ++    F + M+ +
Sbjct: 88  ISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSS 147

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + P+  T  SVLKAC   +++++   +H +A+K G    +YV  SL+ +Y     ++ N
Sbjct: 148 GLQPDYRTFPSVLKAC---RNVTDGNKIHCLALKFGFMWDVYVAASLIHLYCRYG-AVVN 203

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVE-MNPYSFSIAVRACA 225
           AR++F++M  ++  SW  +I+GY  SGN    L      L +G+  M+  +    + AC 
Sbjct: 204 ARILFDEMPTRDMGSWNAMISGYCQSGNAKEAL-----TLSDGLRAMDSVTVVSLLSACT 258

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
             G  + G  IH+  IKHG  S L V N ++D+Y  F  L D  + FD M  +DLI+WN+
Sbjct: 259 EAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNS 318

Query: 286 IIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           II  YE +      + +F +M+  R  P+C T  S+ +  + L  +   + V    +R+G
Sbjct: 319 IIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKG 378

Query: 345 -LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
               ++ + NA++ MYAK G +  ++ +F+ + ++D+++W +++ GY  +G   EAIE++
Sbjct: 379 WFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMY 438

Query: 404 DEMVKSG--VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461
           + M + G  +  ++  +++VL ACS AG + +G+K    +    +  +  +   + D+ G
Sbjct: 439 NIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYG 498

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAAL---RVLD--LKPNMM 516
           + GR+ +A  L   +P + +   W  L+ AC  H     G+ A +    +LD  +KP+ +
Sbjct: 499 KCGRLDDALSLFYQIP-RVNSVPWNTLI-AC--HGFHGHGEKAVMLFKEMLDEGVKPDHI 554

Query: 517 GTYIILSNIYAA----EGKW 532
               +LS    +    EG+W
Sbjct: 555 TFVTLLSACSHSGLVDEGEW 574



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 171/318 (53%), Gaps = 15/318 (4%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI-SMDNARLVFND 173
           + ++ + C  ++S   A  +H   +      ++ +   L+++Y  C + ++  AR  F+ 
Sbjct: 57  VHTLFRYCTNLQS---AKCLHARLVVSNAIQNVCISAKLVNLY--CYLGNVALARYTFDH 111

Query: 174 MKWKNDVSWTTLITGYAHSGNGYGGLGVFKE-MLLEGVEMNPYSFSIAVRACASTGWVSF 232
           +  ++  +W  +I+GY  +G     +  F   ML  G++ +  +F   ++AC +   V+ 
Sbjct: 112 IHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRN---VTD 168

Query: 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEK 292
           G  IH   +K GF  ++ V  S++ +YCR+  + +A   FDEM  +D+ +WN +I+GY +
Sbjct: 169 GNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQ 228

Query: 293 SGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLAL 351
           SG++ E L +   ++    + +  T  S+++AC      + G  +H+  ++ GL+  L +
Sbjct: 229 SGNAKEALTLSDGLR----AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFV 284

Query: 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411
           +N LID+YA+ G++ D QK+F  M  RDL++W S++  Y  +     AI LF EM  S +
Sbjct: 285 SNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRI 344

Query: 412 RPDRIVFMAVLTACSHAG 429
           +PD +  +++ +  S  G
Sbjct: 345 QPDCLTLISLASILSQLG 362


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 193/545 (35%), Positives = 307/545 (56%), Gaps = 18/545 (3%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y   G IE A  +FDEMP RD+VSW  M++GY        +   F EM+R     +
Sbjct: 165 LIDMYLKIGFIELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKAD 224

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
            F + S L AC     L +   +H   I+  LE  I V+ SL+D+Y  C   +D A  VF
Sbjct: 225 RFGMISALGACSIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCG-KVDYAERVF 283

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           N +  KN V+W  +I          GG+    +++ + + M        + +C+ +G + 
Sbjct: 284 NRIYSKNIVAWNAMI----------GGMQEDDKVIPDVITMINL-----LPSCSQSGALL 328

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY- 290
            GK IH   I+  F   L +  +++DMY +   L  A   F++M EK++++WNT++A Y 
Sbjct: 329 EGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYV 388

Query: 291 EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           +     E L MF  + +E   P+  T  S++ A A LA+ S G+Q+H+ I++ GL  N  
Sbjct: 389 QNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTF 448

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           ++NA++ MYAKCG++  +++ F  M  +D+V+W +M++ Y  HG G+ +I+ F EM   G
Sbjct: 449 ISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRTSIQFFSEMRGKG 508

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEA 469
            +P+   F+++LTACS +GL+DEG  +F SM  +Y ++P  E YGC++DLLGR G + EA
Sbjct: 509 FKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEYGIDPGIEHYGCMLDLLGRNGNLDEA 568

Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529
              I+ MP  P   +WG LL A + H    L +LAA  +L LK +  G Y++LSN+YA  
Sbjct: 569 KCFIEEMPLVPTARIWGSLLAASRNHNDVVLAELAARHILSLKHDNTGCYVLLSNMYAEA 628

Query: 530 GKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHM 589
           G+WE+  + + +M+  G  K VG S +++  +   FI  D+  +HT  +Y VL++L++ +
Sbjct: 629 GRWEDVDRIKYLMKEQGLVKTVGCSMVDINGRSESFINQDRSHAHTNLIYDVLDILLKKI 688

Query: 590 NETAY 594
            E  Y
Sbjct: 689 GEDIY 693



 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 131/497 (26%), Positives = 239/497 (48%), Gaps = 25/497 (5%)

Query: 20  PIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVS 79
           P IK++     +S     P   P   +I  T  +  + + GL+  A  +F++M   D   
Sbjct: 39  PFIKRA-----QSKTSFKPLARPNDLNI--TRDLCGFVESGLMGNALDMFEKMNHSDTFI 91

Query: 80  WTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAI 139
           W V+I GYT+     +A   +  M    +  + FT   V+KAC  + +L     VHG  I
Sbjct: 92  WNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTFPFVIKACGELLALMVGQKVHGKLI 151

Query: 140 KEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGL 199
           K G +  +YV N L+D+Y      ++ A  VF++M  ++ VSW ++++GY   G+G   L
Sbjct: 152 KIGFDLDVYVCNFLIDMYLKIGF-IELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSL 210

Query: 200 GVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMY 259
             FKEML  G + + +    A+ AC+    +  G  IH  VI+     ++ V  S++DMY
Sbjct: 211 MCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMY 270

Query: 260 CRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTS 319
            +   +  A + F+ +  K+++ WN +I G +              + ++  P+  T  +
Sbjct: 271 GKCGKVDYAERVFNRIYSKNIVAWNAMIGGMQ--------------EDDKVIPDVITMIN 316

Query: 320 IIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD 379
           ++ +C+   AL  G+ +H   +R+     L L  AL+DMY KCG +  ++ +F++M++++
Sbjct: 317 LLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQMNEKN 376

Query: 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439
           +V+W +M+  Y  +   KEA+++F  ++   ++PD I   +VL A +      EG +   
Sbjct: 377 MVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHS 436

Query: 440 SMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL-- 497
            +    +  N  I   +V +  + G ++ A E    M  K D   W  ++ A   H    
Sbjct: 437 YIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCK-DVVSWNTMIMAYAIHGFGR 495

Query: 498 PNLGKLAALRVLDLKPN 514
            ++   + +R    KPN
Sbjct: 496 TSIQFFSEMRGKGFKPN 512



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 119/230 (51%), Gaps = 2/230 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +L T L+  Y   G ++ A  +F++M E+++VSW  M+A Y     + +A  +F  ++  
Sbjct: 347 VLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNE 406

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + P+A T++SVL A   + S S    +H   +K GL  + ++ N+++ +YA C   +  
Sbjct: 407 PLKPDAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCG-DLQT 465

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR  F+ M  K+ VSW T+I  YA  G G   +  F EM  +G + N  +F   + AC+ 
Sbjct: 466 AREFFDGMVCKDVVSWNTMIMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTFVSLLTACSI 525

Query: 227 TGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM 275
           +G +  G    ++  +++G    +     +LD+  R   L +A  + +EM
Sbjct: 526 SGLIDEGWGFFNSMKVEYGIDPGIEHYGCMLDLLGRNGNLDEAKCFIEEM 575



 Score = 45.8 bits (107), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 35/77 (45%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + ++  ++  Y   G ++ AR  FD M  +DVVSW  MI  Y        +   F EM  
Sbjct: 447 TFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRTSIQFFSEMRG 506

Query: 106 NEVNPNAFTLSSVLKAC 122
               PN  T  S+L AC
Sbjct: 507 KGFKPNGSTFVSLLTAC 523


>gi|224085073|ref|XP_002307479.1| predicted protein [Populus trichocarpa]
 gi|222856928|gb|EEE94475.1| predicted protein [Populus trichocarpa]
          Length = 1026

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 198/560 (35%), Positives = 314/560 (56%), Gaps = 7/560 (1%)

Query: 52   LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
            L+  Y   G +E+AR  F+ +  RD VSW V+I GY       +A+ +F  M    + P+
Sbjct: 469  LVDMYAKSGALEDARQQFELIRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILPD 528

Query: 112  AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
              +L+S+L AC  ++ L     VH +++K G E  +Y  +SL+D+YA C  ++D+A  + 
Sbjct: 529  EVSLASILSACASVRGLEQGKQVHCLSVKTGQETKLYSGSSLIDMYAKCG-AIDSAHKIL 587

Query: 172  NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
              M  ++ VS   LI GYA   N    + +F++ML+EG+     +F+  + AC     ++
Sbjct: 588  ACMPERSVVSMNALIAGYAQI-NLEQAVNLFRDMLVEGINSTEITFASLLDACHEQQKLN 646

Query: 232  FGKLIHAAVIKHGFGSNLPVMN-SILDMYCRFDCLSDANQYFDEMTE-KDLITWNTIIAG 289
             G+ IH+ ++K G   +   +  S+L MY      +DA+  F E +  K  + W  +I+G
Sbjct: 647  LGRQIHSLILKMGLQLDDEFLGVSLLGMYMNSLRTTDASVLFSEFSNPKSAVVWTAMISG 706

Query: 290  YEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
              ++  S   L ++ +M+S    P+  TF S + ACA ++++  G + H+ I   G D +
Sbjct: 707  LSQNDCSVVALQLYKEMRSCNVLPDQATFVSALRACAVVSSIKDGTETHSLIFHTGFDSD 766

Query: 349  LALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
               ++AL+DMYAKCG++  S ++F EMS  +D+++W SM++G+  +G+ ++A+ +FDEM 
Sbjct: 767  ELTSSALVDMYAKCGDVKSSMQVFKEMSRKKDVISWNSMIVGFAKNGYAEDALRVFDEMK 826

Query: 408  KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRV 466
            +S V PD + F+ VLTACSH+G V EG   F  M N Y + P  +   C+VDLLGR G +
Sbjct: 827  QSHVTPDDVTFLGVLTACSHSGRVSEGRLIFDMMVNLYGMQPRADHCACMVDLLGRWGSL 886

Query: 467  KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            KEA E I  + F+PD  VW  +LGAC+ H     G+ AA ++++L+P     Y++LSNIY
Sbjct: 887  KEAEEFINKLNFEPDAKVWATMLGACRIHGDDIRGQQAAEKLIELEPQNSSPYVLLSNIY 946

Query: 527  AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
            AA G W+E    R+ MR  G KK  G SWI V  +   F+A DK       +  +L+ L 
Sbjct: 947  AASGNWDEVNTLRREMREKGVKKLPGCSWIVVGQETNMFVAGDKSHHSASEIDAILKDLT 1006

Query: 587  RHMNETAYEPDIDCLIHDLE 606
              M E  Y   +D    D E
Sbjct: 1007 PLMRENDYVVQLDFFGDDEE 1026



 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 139/450 (30%), Positives = 235/450 (52%), Gaps = 8/450 (1%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
             +I +Y D G ++ A  LF  MP R+VV+W +MI+G+       +A   F  M +  + 
Sbjct: 265 VTVINAYVDLGRLDNASDLFSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIK 324

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
               TL SVL A   + +L    LVH  A+K+GL  ++YV +SL+ +YA C   M+ A+ 
Sbjct: 325 STRSTLGSVLSAIASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCG-KMEAAKK 383

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           VF+ +  +N V W  ++ GY  +G     + +F  M   G   + +++S  + ACA   +
Sbjct: 384 VFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKY 443

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           +  G  +H+ +IK+ F SNL V N+++DMY +   L DA Q F+ +  +D ++WN II G
Sbjct: 444 LDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSGALEDARQQFELIRNRDNVSWNVIIVG 503

Query: 290 Y-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           Y ++    E  ++F +M      P+  +  SI++ACA++  L  G+QVH   V+ G +  
Sbjct: 504 YVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSACASVRGLEQGKQVHCLSVKTGQETK 563

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           L   ++LIDMYAKCG I  + KI + M +R +V+  +++ GY A  + ++A+ LF +M+ 
Sbjct: 564 LYSGSSLIDMYAKCGAIDSAHKILACMPERSVVSMNALIAGY-AQINLEQAVNLFRDMLV 622

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG---RAGR 465
            G+    I F ++L AC     ++ G +    +    +  + E  G  V LLG    + R
Sbjct: 623 EGINSTEITFASLLDACHEQQKLNLGRQIHSLILKMGLQLDDEFLG--VSLLGMYMNSLR 680

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEH 495
             +A  L           VW  ++    ++
Sbjct: 681 TTDASVLFSEFSNPKSAVVWTAMISGLSQN 710



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 131/466 (28%), Positives = 235/466 (50%), Gaps = 9/466 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + ++L+  Y   G +E A+ +FD + E++VV W  M+ GY      N+   +F  M    
Sbjct: 364 VGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSCG 423

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
             P+ FT SS+L AC  +K L     +H + IK     +++V N+L+D+YA    ++++A
Sbjct: 424 FYPDDFTYSSILSACACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSG-ALEDA 482

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R  F  ++ +++VSW  +I GY    +      +F+ M L G+  +  S +  + ACAS 
Sbjct: 483 RQQFELIRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSACASV 542

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  GK +H   +K G  + L   +S++DMY +   +  A++    M E+ +++ N +I
Sbjct: 543 RGLEQGKQVHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACMPERSVVSMNALI 602

Query: 288 AGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD- 346
           AGY +    + +N+F  M  E  +    TF S++ AC     L+ G+Q+H+ I++ GL  
Sbjct: 603 AGYAQINLEQAVNLFRDMLVEGINSTEITFASLLDACHEQQKLNLGRQIHSLILKMGLQL 662

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSD-RDLVTWTSMMIGYGAHGHGKEAIELFDE 405
            +  L  +L+ MY      +D+  +FSE S+ +  V WT+M+ G   +     A++L+ E
Sbjct: 663 DDEFLGVSLLGMYMNSLRTTDASVLFSEFSNPKSAVVWTAMISGLSQNDCSVVALQLYKE 722

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M    V PD+  F++ L AC+    + +G +    +     + ++     +VD+  + G 
Sbjct: 723 MRSCNVLPDQATFVSALRACAVVSSIKDGTETHSLIFHTGFDSDELTSSALVDMYAKCGD 782

Query: 466 VKEAYELIKSMPFKPDESVWGPLL-GACKEHRLPNLGKLAALRVLD 510
           VK + ++ K M  K D   W  ++ G  K     +     ALRV D
Sbjct: 783 VKSSMQVFKEMSRKKDVISWNSMIVGFAKNGYAED-----ALRVFD 823



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 112/433 (25%), Positives = 210/433 (48%), Gaps = 40/433 (9%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +L   ++  Y     ++ A   F ++ ++D+++W  +++ ++     +     F  +  +
Sbjct: 95  VLGNVIVDLYAKCADVDYAERAFKQLEDKDILAWNSILSMHSKQGFPHLVVKYFGLLWNS 154

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V PN FT + VL +C  ++ +     VH   +K G E   Y E +L+ +YA C    D 
Sbjct: 155 GVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGFESISYCEGALIGMYAKCNFLTD- 213

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR +F+     + VSWT++I GY   G     + VF+EM   G E +  +F   + A   
Sbjct: 214 ARSIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQEPDQVAFVTVINA--- 270

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
             +V  G+                              L +A+  F  M  ++++ WN +
Sbjct: 271 --YVDLGR------------------------------LDNASDLFSRMPNRNVVAWNLM 298

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+G+ K G   E +  F  M+         T  S+++A A+LAAL  G  VHA  +++GL
Sbjct: 299 ISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIASLAALDFGLLVHAEALKQGL 358

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             N+ + ++L+ MYAKCG +  ++K+F  ++++++V W +M+ GY  +G+  E +ELF  
Sbjct: 359 HSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFN 418

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M   G  PD   + ++L+AC+    +D G +    +       N  +   +VD+  ++G 
Sbjct: 419 MKSCGFYPDDFTYSSILSACACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSGA 478

Query: 466 VKEA---YELIKS 475
           +++A   +ELI++
Sbjct: 479 LEDARQQFELIRN 491



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/313 (31%), Positives = 159/313 (50%), Gaps = 17/313 (5%)

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
           K+IHA  +K GF S   + N I+D+Y +   +  A + F ++ +KD++ WN+I++ + K 
Sbjct: 79  KIIHAQSLKLGFWSKGVLGNVIVDLYAKCADVDYAERAFKQLEDKDILAWNSILSMHSKQ 138

Query: 294 GSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
           G     +  F  + +    PN FTF  ++++CA L  + CG+QVH  +V+ G +      
Sbjct: 139 GFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGFESISYCE 198

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
            ALI MYAKC  ++D++ IF    + D V+WTSM+ GY   G  +EA+++F EM K G  
Sbjct: 199 GALIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQE 258

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA--GRVKEAY 470
           PD++ F+ V+ A    G +D     F  M      PN+ +    + + G A  G   EA 
Sbjct: 259 PDQVAFVTVINAYVDLGRLDNASDLFSRM------PNRNVVAWNLMISGHAKGGYGVEAI 312

Query: 471 ELIKSMP---FKPDESVWGPLLGACKEHRLPNLGKLAALRVLD--LKPNM-MGTYIILSN 524
           E  ++M     K   S  G +L A       + G L     L   L  N+ +G+ ++  +
Sbjct: 313 EFFQNMRKAGIKSTRSTLGSVLSAIASLAALDFGLLVHAEALKQGLHSNVYVGSSLV--S 370

Query: 525 IYAAEGKWEEFAK 537
           +YA  GK E   K
Sbjct: 371 MYAKCGKMEAAKK 383



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 117/476 (24%), Positives = 208/476 (43%), Gaps = 84/476 (17%)

Query: 133 LVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHS 192
           ++H  ++K G      + N ++D+YA C   +D A   F  ++ K+ ++W ++++   HS
Sbjct: 80  IIHAQSLKLGFWSKGVLGNVIVDLYAKCA-DVDYAERAFKQLEDKDILAWNSILS--MHS 136

Query: 193 GNGYGGLGV--FKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLP 250
             G+  L V  F  +   GV  N ++F+I + +CA    V  G+ +H  V+K GF S   
Sbjct: 137 KQGFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGFESISY 196

Query: 251 VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSER 309
              +++ MY + + L+DA   FD   E D ++W ++I GY K G   E + +F +M+   
Sbjct: 197 CEGALIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVG 256

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
             P+   F ++I                               NA +D+    G + ++ 
Sbjct: 257 QEPDQVAFVTVI-------------------------------NAYVDL----GRLDNAS 281

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
            +FS M +R++V W  M+ G+   G+G EAIE F  M K+G++  R    +VL+A +   
Sbjct: 282 DLFSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIASLA 341

Query: 430 LVDEGL-----------------------------------KYFKSMNDYNVNPNKEIYG 454
            +D GL                                   K F ++N+ NV     + G
Sbjct: 342 ALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLG 401

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514
             V   G A  V E +  +KS  F PD+  +  +L AC   +  +LG    L  + +K  
Sbjct: 402 GYVQ-NGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLDLGH--QLHSVIIKNK 458

Query: 515 MMGTYII---LSNIYAAEGKWEEFAKFRKIMRGMG--SKKEVGMSWIEVRDKVCGF 565
                 +   L ++YA  G  E+  +  +++R     S   + + +++  D+V  F
Sbjct: 459 FASNLFVGNALVDMYAKSGALEDARQQFELIRNRDNVSWNVIIVGYVQEEDEVEAF 514


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 207/617 (33%), Positives = 322/617 (52%), Gaps = 51/617 (8%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P+  S+    +I  Y        AR LFD+MPERD+ SW VM+ GY       +A  +F
Sbjct: 72  MPRRSSVSYNAMISGYLRNAKFSLARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLF 131

Query: 101 VEMVRNEV----------NPNAFT--LSSVLKACKGMKSLS----NAALVHGMAIKEGLE 144
             M + +V            N F      V        S+S     AA VH   +KE   
Sbjct: 132 DLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARR 191

Query: 145 GSIYVENSLMDVYATCCIS--------MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGY 196
             ++   S  ++ +  C+         + +AR +F+ M  ++ +SW T+I+GYA  G+  
Sbjct: 192 --LFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLS 249

Query: 197 GGLGVFKEMLLEGV-----------------EMNPYSFSIAVRACAS-----TGWVSFGK 234
               +F E  +  V                 E   Y   + V+   S      G+V + K
Sbjct: 250 QAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKK 309

Query: 235 LIHAAVIKHGFG-SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
           ++ A  +       N+   N+++  Y +   ++ A + FD M ++D ++W  II+GY ++
Sbjct: 310 MVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQN 369

Query: 294 GS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
           G   E LNMF +MK +  S N  TF+  ++ CA +AAL  G+QVH  +V+ G +    + 
Sbjct: 370 GHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVG 429

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
           NAL+ MY KCG+  ++  +F  + ++D+V+W +M+ GY  HG G++A+ LF+ M K+GV+
Sbjct: 430 NALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVK 489

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471
           PD I  + VL+ACSH+GL+D G +YF SM+ DYNV P  + Y C++DLLGRAGR++EA  
Sbjct: 490 PDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAEN 549

Query: 472 LIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK 531
           L+++MPF P  + WG LLGA + H    LG+ AA  V  ++P   G Y++LSN+YAA G+
Sbjct: 550 LMRNMPFDPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGR 609

Query: 532 WEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNE 591
           W +  K R  MR  G +K  G SW+EV++K+  F   D        +Y  LE L   M  
Sbjct: 610 WVDVGKMRSKMREAGVQKVTGYSWVEVQNKIHTFSVGDCFHPEKDRIYAFLEELDLKMRR 669

Query: 592 TAYEPDIDCLIHDLEGE 608
             Y      ++HD+E E
Sbjct: 670 EGYVSSTKLVLHDVEEE 686



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 136/566 (24%), Positives = 239/566 (42%), Gaps = 83/566 (14%)

Query: 27  QSVKKSSIQSDPPLIP-KGPSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMI 84
           +S ++S+    P  +  K P I+  N  I S+   G  + A  +F+ MP R  VS+  MI
Sbjct: 25  RSKRRSTNSYSPSSVKFKDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMI 84

Query: 85  AGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLE 144
           +GY      + A  +F +M   ++    F+ + +L      + L  A  +  +  K+   
Sbjct: 85  SGYLRNAKFSLARDLFDKMPERDL----FSWNVMLTGYVRNRRLGEAHKLFDLMPKK--- 137

Query: 145 GSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKE 204
             +   N+++  YA     +D AR VFN M  +N +SW  L+  Y H+G       +F+ 
Sbjct: 138 -DVVSWNAMLSGYAQNGF-VDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFE- 194

Query: 205 MLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVM-----NSILDMY 259
                   +  ++ +    C   G+V    L  A  +       +PV      N+++  Y
Sbjct: 195 --------SQSNWELISWNCLMGGYVKRNMLGDARQL----FDRMPVRDVISWNTMISGY 242

Query: 260 CRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFT 318
            +   LS A + F+E   +D+ TW  +++GY ++G   E    F +M  +    N  ++ 
Sbjct: 243 AQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVK----NEISYN 298

Query: 319 SIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR 378
           +++A       +    ++   +  R    N++  N +I  Y + G I+ ++K+F  M  R
Sbjct: 299 AMLAGYVQYKKMVIAGELFEAMPCR----NISSWNTMITGYGQNGGIAQARKLFDMMPQR 354

Query: 379 DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS-----------H 427
           D V+W +++ GY  +GH +EA+ +F EM + G   +R  F   L+ C+           H
Sbjct: 355 DCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVH 414

Query: 428 AGLVDEGLK------------YFK--SMNDYN-----------VNPNKEIYGCVVDLLGR 462
             +V  G +            YFK  S ++ N           V+ N  I G      GR
Sbjct: 415 GQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGR 474

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGK---LAALRVLDLKPNMMGTY 519
              V   +E +K    KPDE     +L AC    L + G     +  R  ++KP     Y
Sbjct: 475 QALV--LFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSK-HY 531

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGM 545
             + ++    G+ EE      +MR M
Sbjct: 532 TCMIDLLGRAGRLEE---AENLMRNM 554


>gi|242084292|ref|XP_002442571.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
 gi|241943264|gb|EES16409.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
          Length = 698

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 197/546 (36%), Positives = 307/546 (56%), Gaps = 8/546 (1%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108
           A+ L+  Y   G + +AR +FD MP R+ VSW  +IAGY       QA  +F+EM R E+
Sbjct: 133 ASALLDVYAKCGRLSDARRVFDGMPVRNTVSWNALIAGYAESRKPAQAMELFLEMQRVEL 192

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
            P+  T +++L   +G    S    +HG   K G    + V N+ +  Y+ C    D+ R
Sbjct: 193 VPDDATFAALLATVEGPSWYSLMQQLHGKIAKYGSALGLVVLNAAITAYSQCGAFADSRR 252

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAVRACAST 227
            +F+ ++ ++ +SW +++  YA+ G     +  F  M+ E GV+ + YSF+  V  C+  
Sbjct: 253 -IFDGIQSRDLISWNSMLGAYAYHGMDDEAMRFFVRMMRESGVQPDMYSFTSVVSVCSEH 311

Query: 228 GWVSF-GKLIHAAVIKHGFGSNLPVMNSILDMYCRF--DCL-SDANQYFDEMTEKDLITW 283
           G     G+ IH+ V+K G      V N+++ MY RF  +C+  DA + FD +  KD ++W
Sbjct: 312 GCDDRQGRSIHSLVVKIGLEGVTHVCNAMIAMYTRFTENCMMEDAYKCFDSLVFKDAVSW 371

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N+++ GY   G SS+ L  F  M++E  S + F  ++ + +C+ LA L  G+QVH+ +++
Sbjct: 372 NSMLTGYSHHGLSSDALRFFRFMRAENVSTDEFALSAALRSCSDLAVLRLGRQVHSLVIQ 431

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            G   N  ++++LI MY+KCG + D++K F E      V W SMM GY  HG  +   +L
Sbjct: 432 SGFSSNDFVSSSLIFMYSKCGMVGDARKSFEEADKGSSVPWNSMMFGYAQHGQAQTVTDL 491

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLG 461
           F EM+   V  D + F+A+LTA SH GLVDEG +   SM   Y +    E Y C VDL G
Sbjct: 492 FSEMLDHKVPLDHVTFVALLTAYSHGGLVDEGSEILNSMETRYKIPLRMEHYACGVDLYG 551

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           RAG++ +A ELI+SMPF+PD  VW  LLGAC+ H    L    A  +   +P    TY++
Sbjct: 552 RAGQLDKAKELIESMPFQPDAMVWMTLLGACRIHGNMELASDVASHLFVAEPRQHSTYVL 611

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGV 581
           LS++Y+  G W + A  +K+M+  G  K  G SWIEV+++V  F A+D+       ++ +
Sbjct: 612 LSSMYSGRGMWSDRATVQKVMKNRGLSKVPGWSWIEVKNEVHSFNADDRSHPRMDEIFDM 671

Query: 582 LEMLIR 587
           L ML++
Sbjct: 672 LRMLLQ 677



 Score =  194 bits (494), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 117/416 (28%), Positives = 205/416 (49%), Gaps = 11/416 (2%)

Query: 62  IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121
           +  AR +FDE+P  D VSW  ++A + +   H  AW +  +M    +  + F L S L++
Sbjct: 45  LAAARRVFDEIPRPDAVSWNSLLAAHVAAGAHRDAWRLLKDMHARGLTASTFALGSALRS 104

Query: 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS 181
               +     A +   A+K GL  +++  ++L+DVYA C   + +AR VF+ M  +N VS
Sbjct: 105 AAAARRPELGAQLQSFAVKSGLVDNVFSASALLDVYAKCG-RLSDARRVFDGMPVRNTVS 163

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP--YSFSIAVRACASTGWVSFGKLIHAA 239
           W  LI GYA S      + +F EM  + VE+ P   +F+  +       W S  + +H  
Sbjct: 164 WNALIAGYAESRKPAQAMELFLEM--QRVELVPDDATFAALLATVEGPSWYSLMQQLHGK 221

Query: 240 VIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSEC 298
           + K+G    L V+N+ +  Y +    +D+ + FD +  +DLI+WN+++  Y   G   E 
Sbjct: 222 IAKYGSALGLVVLNAAITAYSQCGAFADSRRIFDGIQSRDLISWNSMLGAYAYHGMDDEA 281

Query: 299 LNMFSKMKSER-FSPNCFTFTSIIAACATLAALS-CGQQVHAGIVRRGLDGNLALANALI 356
           +  F +M  E    P+ ++FTS+++ C+        G+ +H+ +V+ GL+G   + NA+I
Sbjct: 282 MRFFVRMMRESGVQPDMYSFTSVVSVCSEHGCDDRQGRSIHSLVVKIGLEGVTHVCNAMI 341

Query: 357 DMYAKCGN---ISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP 413
            MY +      + D+ K F  +  +D V+W SM+ GY  HG   +A+  F  M    V  
Sbjct: 342 AMYTRFTENCMMEDAYKCFDSLVFKDAVSWNSMLTGYSHHGLSSDALRFFRFMRAENVST 401

Query: 414 DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
           D     A L +CS   ++  G +    +     + N  +   ++ +  + G V +A
Sbjct: 402 DEFALSAALRSCSDLAVLRLGRQVHSLVIQSGFSSNDFVSSSLIFMYSKCGMVGDA 457



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 171/339 (50%), Gaps = 7/339 (2%)

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR VF+++   + VSW +L+  +  +G       + K+M   G+  + ++   A+R+ A+
Sbjct: 48  ARRVFDEIPRPDAVSWNSLLAAHVAAGAHRDAWRLLKDMHARGLTASTFALGSALRSAAA 107

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
                 G  + +  +K G   N+   +++LD+Y +   LSDA + FD M  ++ ++WN +
Sbjct: 108 ARRPELGAQLQSFAVKSGLVDNVFSASALLDVYAKCGRLSDARRVFDGMPVRNTVSWNAL 167

Query: 287 IAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           IAGY E    ++ + +F +M+     P+  TF +++A     +  S  QQ+H  I + G 
Sbjct: 168 IAGYAESRKPAQAMELFLEMQRVELVPDDATFAALLATVEGPSWYSLMQQLHGKIAKYGS 227

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
              L + NA I  Y++CG  +DS++IF  +  RDL++W SM+  Y  HG   EA+  F  
Sbjct: 228 ALGLVVLNAAITAYSQCGAFADSRRIFDGIQSRDLISWNSMLGAYAYHGMDDEAMRFFVR 287

Query: 406 MVK-SGVRPDRIVFMAVLTACSHAGLVD-EGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
           M++ SGV+PD   F +V++ CS  G  D +G      +    +     +   ++ +  R 
Sbjct: 288 MMRESGVQPDMYSFTSVVSVCSEHGCDDRQGRSIHSLVVKIGLEGVTHVCNAMIAMYTRF 347

Query: 464 GR---VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN 499
                +++AY+   S+ FK D   W  +L     H L +
Sbjct: 348 TENCMMEDAYKCFDSLVFK-DAVSWNSMLTGYSHHGLSS 385



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 129/272 (47%), Gaps = 23/272 (8%)

Query: 265 LSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAA 323
           L+ A + FDE+   D ++WN+++A +  +G+  +   +   M +   + + F   S + +
Sbjct: 45  LAAARRVFDEIPRPDAVSWNSLLAAHVAAGAHRDAWRLLKDMHARGLTASTFALGSALRS 104

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTW 383
            A       G Q+ +  V+ GL  N+  A+AL+D+YAKCG +SD++++F  M  R+ V+W
Sbjct: 105 AAAARRPELGAQLQSFAVKSGLVDNVFSASALLDVYAKCGRLSDARRVFDGMPVRNTVSW 164

Query: 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND 443
            +++ GY       +A+ELF EM +  + PD   F A+L          EG  ++  M  
Sbjct: 165 NALIAGYAESRKPAQAMELFLEMQRVELVPDDATFAALLATV-------EGPSWYSLMQQ 217

Query: 444 YNVNPNKEIYGCVVDLL---------GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKE 494
            +    K  YG  + L+          + G   ++  +   +  + D   W  +LGA   
Sbjct: 218 LHGKIAK--YGSALGLVVLNAAITAYSQCGAFADSRRIFDGIQSR-DLISWNSMLGAYAY 274

Query: 495 HRLPNLGKLAALRVLD---LKPNMMGTYIILS 523
           H + +      +R++    ++P+M     ++S
Sbjct: 275 HGMDDEAMRFFVRMMRESGVQPDMYSFTSVVS 306


>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
 gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
          Length = 802

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 187/551 (33%), Positives = 315/551 (57%), Gaps = 6/551 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +  +LI  Y   G IE A  +F EMP RD+VSW  MI+GY S     ++ + F EM  + 
Sbjct: 163 IGNSLIIMYAKIGCIESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASG 222

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           +  + F++  +L AC     L N   +H   ++  LE  + V+ SL+D+YA C   MD A
Sbjct: 223 IKLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCG-RMDYA 281

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA--VRACA 225
             +F+ +  K+ V+W  +I GY+ +   +      ++M  EG +++P   ++   +  CA
Sbjct: 282 ERLFDQITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQ-EGGKLHPDWITMINLLPPCA 340

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               +  GK +H   I++GF  +L +  +++DMY     L  A   F +M E++LI+WN 
Sbjct: 341 QLEAILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAECLFGQMNERNLISWNA 400

Query: 286 IIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +IA Y K+G + + + +F  + ++   P+  T  SI+ A A LA+L   +Q+H  + +  
Sbjct: 401 MIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPAYAELASLREAEQIHGYVTKLK 460

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           LD N  ++N+++ MY KCGN+  +++IF  M+ +D+++W ++++ Y  HG G+ +IELF 
Sbjct: 461 LDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFKDVISWNTVIMAYAIHGFGRISIELFS 520

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRA 463
           EM + G  P+   F+++L +CS AGLV+EG +YF SM  DYN+NP  E YGC++DL+GR 
Sbjct: 521 EMREKGFEPNGSTFVSLLLSCSVAGLVNEGWEYFNSMKRDYNINPGIEHYGCILDLIGRT 580

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G +  A   I+ MP  P   +WG LL A +      L ++AA  +L L+ +  G Y++LS
Sbjct: 581 GNLDHAKNFIEEMPLAPTARIWGSLLTASRNKGDVELAEIAAEHILSLEHDNTGCYVLLS 640

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           N+YA  G+WE+  + +  M+  G +K VG S +++  K   F+  D+  +    VY VL+
Sbjct: 641 NMYAEAGRWEDVERIKFHMKKEGLEKSVGCSVVDLSSKTFRFVNQDRSDNEINMVYDVLD 700

Query: 584 MLIRHMNETAY 594
           ++ + + E  Y
Sbjct: 701 IISKKIGEDVY 711



 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 136/469 (28%), Positives = 244/469 (52%), Gaps = 6/469 (1%)

Query: 30  KKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTS 89
           K +  + +   + +  S+  T  + SY + G ++ A  LF+ M + D   W VMI G+  
Sbjct: 44  KTARSKRNQSFLVERNSVSLTRALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVD 103

Query: 90  FNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYV 149
                 A   +  M    V  + FT   V+KAC G+  L+    VHG  IK GL+  IY+
Sbjct: 104 NGLFWDAVDFYHRMEFGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYI 163

Query: 150 ENSLMDVYATC-CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE 208
            NSL+ +YA   CI  ++A +VF +M  ++ VSW ++I+GY   G+G+  L  F+EM   
Sbjct: 164 GNSLIIMYAKIGCI--ESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQAS 221

Query: 209 GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDA 268
           G++++ +S    + AC+  G++  GK IH  +++     ++ V  S++DMY +   +  A
Sbjct: 222 GIKLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYA 281

Query: 269 NQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKS-ERFSPNCFTFTSIIAACAT 326
            + FD++T+K ++ WN +I GY  +  S E      KM+   +  P+  T  +++  CA 
Sbjct: 282 ERLFDQITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQ 341

Query: 327 LAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSM 386
           L A+  G+ VH   +R G   +L L  AL+DMY +CG +  ++ +F +M++R+L++W +M
Sbjct: 342 LEAILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAECLFGQMNERNLISWNAM 401

Query: 387 MIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV 446
           +  Y  +G  ++A+ LF ++    ++PD     ++L A +    + E  +    +    +
Sbjct: 402 IASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPAYAELASLREAEQIHGYVTKLKL 461

Query: 447 NPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           + N  +   +V + G+ G +  A E+   M FK D   W  ++ A   H
Sbjct: 462 DSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFK-DVISWNTVIMAYAIH 509



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 128/253 (50%), Gaps = 3/253 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +L T L+  Y + G ++ A  LF +M ER+++SW  MIA YT    + +A T+F ++   
Sbjct: 365 VLETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGENRKAMTLFQDLCNK 424

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + P+A T++S+L A   + SL  A  +HG   K  L+ + +V NS++ +Y  C  ++  
Sbjct: 425 TLKPDATTIASILPAYAELASLREAEQIHGYVTKLKLDSNTFVSNSIVFMYGKCG-NLLR 483

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR +F+ M +K+ +SW T+I  YA  G G   + +F EM  +G E N  +F   + +C+ 
Sbjct: 484 AREIFDRMTFKDVISWNTVIMAYAIHGFGRISIELFSEMREKGFEPNGSTFVSLLLSCSV 543

Query: 227 TGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLITWN 284
            G V+ G +  ++    +     +     ILD+  R   L  A  + +EM        W 
Sbjct: 544 AGLVNEGWEYFNSMKRDYNINPGIEHYGCILDLIGRTGNLDHAKNFIEEMPLAPTARIWG 603

Query: 285 TIIAGYEKSGSSE 297
           +++      G  E
Sbjct: 604 SLLTASRNKGDVE 616



 Score = 42.0 bits (97), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 37/77 (48%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + ++ +++  Y   G +  AR +FD M  +DV+SW  +I  Y        +  +F EM  
Sbjct: 465 TFVSNSIVFMYGKCGNLLRAREIFDRMTFKDVISWNTVIMAYAIHGFGRISIELFSEMRE 524

Query: 106 NEVNPNAFTLSSVLKAC 122
               PN  T  S+L +C
Sbjct: 525 KGFEPNGSTFVSLLLSC 541


>gi|242032375|ref|XP_002463582.1| hypothetical protein SORBIDRAFT_01g002460 [Sorghum bicolor]
 gi|241917436|gb|EER90580.1| hypothetical protein SORBIDRAFT_01g002460 [Sorghum bicolor]
          Length = 610

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 183/472 (38%), Positives = 279/472 (59%), Gaps = 5/472 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S+ AT L   YF      +AR +FD MP RD V+W  ++AGY        A    V M  
Sbjct: 94  SLAATALANMYFKCRRPVDARRVFDRMPARDRVAWNALVAGYARNGLPALAMEAVVRMQG 153

Query: 106 NE--VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
            E    P++ TL SVL AC   + L     VH  A++ GL+  + V  +++D Y  C  +
Sbjct: 154 EEGGEQPDSITLVSVLPACADARVLGACREVHAFALRAGLDELVNVSTAVLDAYCKCG-A 212

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           ++ AR VF+ M  +N VSW  +I GYA +GN    L +F  M+ EGV++   +   A++A
Sbjct: 213 VEAARAVFDWMPVRNSVSWNAMIDGYAENGNASEALALFWRMVQEGVDVTDAAVLAALQA 272

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLIT 282
           C   G +   + +H  +++ G  SN+ VMN+++  Y +      A   F+E+  +K  I+
Sbjct: 273 CRELGCLDEARRVHELLVRVGLKSNVSVMNALITTYSKCKRADLAAHAFNELGIKKTRIS 332

Query: 283 WNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           WN +I G+ ++G SE    +F++M+ E   P+ FT  S+I A A ++     + +H   +
Sbjct: 333 WNAMILGFTQNGCSEDAERLFARMQLENVKPDSFTLVSVIPAVADISDPLQARWIHGYSI 392

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           R  LD ++ +  ALIDMY+KCG ++ ++K+F    DR ++TW +M+ GYG+HG G+ A+E
Sbjct: 393 RHQLDQDIYVLTALIDMYSKCGRVTIARKLFDSARDRHVITWNAMIHGYGSHGFGQVAVE 452

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461
           LF+EM  +G  P+   F++VL ACSHAGLVDEG KYF SM DY + P  E YG +VDLLG
Sbjct: 453 LFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGRKYFASMKDYGLEPGMEHYGTLVDLLG 512

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513
           RAG+V EA+  I++MP +P  SV+G +LGACK H+   L + +A ++ +L P
Sbjct: 513 RAGKVDEAWSFIQNMPIEPGISVYGAMLGACKLHKNVELAEESAQKIFELGP 564



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 125/478 (26%), Positives = 210/478 (43%), Gaps = 50/478 (10%)

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
            P   T +++LK C     L+    VH      GL        +L ++Y  C   +D AR
Sbjct: 56  RPVLRTFTALLKLCAARADLATGRAVHAQLTARGLASESLAATALANMYFKCRRPVD-AR 114

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVE--MNPYSFSI--AVRAC 224
            VF+ M  ++ V+W  L+ GYA   NG   L +   + ++G E    P S ++   + AC
Sbjct: 115 RVFDRMPARDRVAWNALVAGYAR--NGLPALAMEAVVRMQGEEGGEQPDSITLVSVLPAC 172

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           A    +   + +HA  ++ G    + V  ++LD YC+   +  A   FD M  ++ ++WN
Sbjct: 173 ADARVLGACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDWMPVRNSVSWN 232

Query: 285 TIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +I GY ++G +SE L +F +M  E          + + AC  L  L   ++VH  +VR 
Sbjct: 233 AMIDGYAENGNASEALALFWRMVQEGVDVTDAAVLAALQACRELGCLDEARRVHELLVRV 292

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEAIEL 402
           GL  N+++ NALI  Y+KC     +   F+E+   +  ++W +M++G+  +G  ++A  L
Sbjct: 293 GLKSNVSVMNALITTYSKCKRADLAAHAFNELGIKKTRISWNAMILGFTQNGCSEDAERL 352

Query: 403 FDEMVKSGVRPDRIVFMAVLTAC-----------------------------------SH 427
           F  M    V+PD    ++V+ A                                    S 
Sbjct: 353 FARMQLENVKPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDIYVLTALIDMYSK 412

Query: 428 AGLVDEGLKYFKSMNDYNV-NPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWG 486
            G V    K F S  D +V   N  I+G      G+     E +E +K     P+E+ + 
Sbjct: 413 CGRVTIARKLFDSARDRHVITWNAMIHGYGSHGFGQVA--VELFEEMKGTGSLPNETTFL 470

Query: 487 PLLGACKEHRLPNLGK--LAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIM 542
            +L AC    L + G+   A+++   L+P M   Y  L ++    GK +E   F + M
Sbjct: 471 SVLAACSHAGLVDEGRKYFASMKDYGLEPGME-HYGTLVDLLGRAGKVDEAWSFIQNM 527


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 180/516 (34%), Positives = 303/516 (58%), Gaps = 9/516 (1%)

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
           + ++  E +P+  T   ++  C    SLS+A  VH   +  G +   ++   L+ +Y+  
Sbjct: 66  IRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDL 125

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
             S+D AR VF+  + +    W  L      +G+G   LG++ +M   GVE + ++++  
Sbjct: 126 G-SVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYV 184

Query: 221 VRACAST----GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
           ++AC ++      +  GK IHA + + G+ S++ +M +++DMY RF C+  A+  F  M 
Sbjct: 185 LKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMP 244

Query: 277 EKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSER--FSPNCFTFTSIIAACATLAALSCG 333
            +++++W+ +IA Y K+G + E L  F +M  E    SPN  T  S++ ACA+LAAL  G
Sbjct: 245 VRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQG 304

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
           + +H  I+RRGLD  L + +AL+ MY +CG +   Q++F  M DRD+V+W S++  YG H
Sbjct: 305 KLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVH 364

Query: 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEI 452
           G+GK+AI++F+EM+ +G  P  + F++VL ACSH GLV+EG + F++M  D+ + P  E 
Sbjct: 365 GYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEH 424

Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLK 512
           Y C+VDLLGRA R+ EA ++++ M  +P   VWG LLG+C+ H    L + A+ R+  L+
Sbjct: 425 YACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALE 484

Query: 513 PNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMG 572
           P   G Y++L++IYA    W+E  + +K++   G +K  G  W+EVR K+  F++ D+  
Sbjct: 485 PKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFN 544

Query: 573 SHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
              + ++  L  L   M E  Y P    ++++LE E
Sbjct: 545 PLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETE 580



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 100/359 (27%), Positives = 183/359 (50%), Gaps = 12/359 (3%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            LAT LI  Y D G ++ AR +FD+  +R +  W  +    T      +   ++ +M R 
Sbjct: 113 FLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRI 172

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAAL----VHGMAIKEGLEGSIYVENSLMDVYATC-C 161
            V  + FT + VLKAC   +   N  +    +H    + G    +Y+  +L+D+YA   C
Sbjct: 173 GVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGC 232

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI-- 219
           +  D A  VF  M  +N VSW+ +I  YA +G  +  L  F+EM+ E  + +P S ++  
Sbjct: 233 V--DYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVS 290

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
            ++ACAS   +  GKLIH  +++ G  S LPV+++++ MY R   L    + FD M ++D
Sbjct: 291 VLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRD 350

Query: 280 LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           +++WN++I+ Y   G   + + +F +M +   SP   TF S++ AC+    +  G+++  
Sbjct: 351 VVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFE 410

Query: 339 GIVR-RGLDGNLALANALIDMYAKCGNISDSQKIFSEM-SDRDLVTWTSMMIGYGAHGH 395
            + R  G+   +     ++D+  +   + ++ K+  +M ++     W S++     HG+
Sbjct: 411 TMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGN 469


>gi|147780613|emb|CAN69119.1| hypothetical protein VITISV_031846 [Vitis vinifera]
          Length = 654

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 193/555 (34%), Positives = 299/555 (53%), Gaps = 52/555 (9%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + ++L+  Y   GL  EAR +FD MPER+ VSW  MI+GY S     +A  +F  M R 
Sbjct: 144 FVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRRE 203

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           E   N F  +SVL A    + ++N   +H +A+K GL   + V N+L+ +YA C  S+D+
Sbjct: 204 EEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCG-SLDD 262

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A   F     KN ++W+ +ITG A SG+    L +F  M L G+  + ++F   + AC+ 
Sbjct: 263 ALQTFETSSDKNSITWSAMITGXAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSD 322

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G    GK +H  ++K GF S + VM +++DMY +   + DA + FD + E D++ W ++
Sbjct: 323 LGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSM 382

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I GY ++G +E  L+++ +M+ E   PN  T  S++ AC++LAAL  G+Q+HA  V+ G 
Sbjct: 383 IGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGF 442

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
              + + +AL  MYAKCG + D   +F  M  RD+++W +M+ G   +G GKEA+ELF+E
Sbjct: 443 GLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFEE 502

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAG 464
           M   G +PD + F+ +L+ACSH GLV+ G  YF+ M D + ++P  E Y C+VD+L RAG
Sbjct: 503 MQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILSRAG 562

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           ++KEA E  +S               A  +H                             
Sbjct: 563 KLKEAIEFTES---------------ATIDH----------------------------- 578

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
                G WE+  + R++M+  G  KE G SWIE++  V  F+  D+M      ++  L  
Sbjct: 579 -----GMWEDVERVRRMMKLRGVSKEPGCSWIELKSGVHVFVVKDQMHPQIGDIHVELRQ 633

Query: 585 LIRHMNETAYEPDID 599
           L + M +  YEP  D
Sbjct: 634 LSKQMKDEGYEPATD 648



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 113/372 (30%), Positives = 200/372 (53%), Gaps = 14/372 (3%)

Query: 126 KSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTL 185
           +SL     +H   IK      +Y+ NSL+++YA C   +  A+ VF  ++ K+ VSW  +
Sbjct: 20  RSLQKGKALHAQIIKSS-SSCVYIANSLVNLYAKC-QRLREAKFVFERIQNKDVVSWNCI 77

Query: 186 ITGYAHSGNGYGG--LGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH 243
           I GY+  G       + +F+ M  E    N ++F+    A ++    + G+L HA  IK 
Sbjct: 78  INGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKM 137

Query: 244 GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMF 302
               ++ V +S+++MYC+     +A + FD M E++ ++W T+I+GY  +  ++E L +F
Sbjct: 138 DSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLF 197

Query: 303 SKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362
             M+ E    N F FTS+++A      ++ G+Q+H   V+ GL   +++ NAL+ MYAKC
Sbjct: 198 RLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKC 257

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
           G++ D+ + F   SD++ +TW++M+ G    G   +A++LF  M  SG+RP    F+ V+
Sbjct: 258 GSLDDALQTFETSSDKNSITWSAMITGXAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVI 317

Query: 423 TACSHAGLVDEGLKYFKSMNDY--NVNPNKEIY--GCVVDLLGRAGRVKEAYELIKSMPF 478
            ACS  G   EG    K ++DY   +    +IY    +VD+  +   + +A +    +  
Sbjct: 318 NACSDLGAAWEG----KQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQ- 372

Query: 479 KPDESVWGPLLG 490
           +PD  +W  ++G
Sbjct: 373 EPDIVLWTSMIG 384


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 192/560 (34%), Positives = 316/560 (56%), Gaps = 10/560 (1%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           GP +L  +LI  Y   G I+ AR +F+   E D VSW  +IAGY     +++   + V+M
Sbjct: 153 GPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKM 212

Query: 104 VRNEVNPNAFTLSSVLKACKG--MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
           +R+ +N N++ L S LKAC      S+    ++HG A+K GL+  + V  +L+D YA   
Sbjct: 213 LRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIG 272

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGN-----GYGGLGVFKEMLLEGVEMNPYS 216
             +++A  +F  M   N V +  +I G+              + +F EM   G++ + ++
Sbjct: 273 -DLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFT 331

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
           FS  ++AC++      GK IHA + K+   S+  + N+++++Y     + D  + F    
Sbjct: 332 FSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTP 391

Query: 277 EKDLITWNTIIAGYEKSGSSEC-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ 335
           + D+++W ++I G+ ++G  E  L +F ++      P+ FT + +++ACA LAA+  G+Q
Sbjct: 392 KLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQ 451

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
           +HA  ++ G+     + N+ I MYAKCG+I  +   F E  + D+V+W+ M+     HG 
Sbjct: 452 IHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGC 511

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYG 454
            KEA++LF+ M  SG+ P+ I F+ VL ACSH GLV+EGL+YF+ M  D+ + PN +   
Sbjct: 512 AKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSA 571

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514
           C+VDLLGRAGR+ EA   I    F+ D  +W  LL AC+ H+  + GK  A RV++L+P 
Sbjct: 572 CIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIELEPE 631

Query: 515 MMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSH 574
              +Y++L NIY   G      + R +M+  G KKE G+SWIEV + V  F+A D+   +
Sbjct: 632 AAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPN 691

Query: 575 TQYVYGVLEMLIRHMNETAY 594
           +Q +Y  LE ++  + +  Y
Sbjct: 692 SQVIYVQLEEMLEEIKKLDY 711



 Score =  245 bits (626), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 140/460 (30%), Positives = 240/460 (52%), Gaps = 18/460 (3%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L  NL+  Y   G  + A+ LFD MP+R+VVSW  +I+GYT    +++   +F E   ++
Sbjct: 56  LLNNLLYMYCKCGETDVAKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSD 115

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           +  + FT S+ L  C     L    L+H +    GL G + + NSL+D+Y  C   +D A
Sbjct: 116 LRLDKFTFSNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCG-RIDWA 174

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS- 226
           RLVF      + VSW +LI GY   G+    L +  +ML  G+ +N Y+   A++AC S 
Sbjct: 175 RLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSN 234

Query: 227 -TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
            +  +  GK++H   +K G   ++ V  ++LD Y +   L DA + F  M + +++ +N 
Sbjct: 235 FSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNA 294

Query: 286 IIAGYEK------SGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           +IAG+ +        ++E + +F +M+S    P+ FTF+SI+ AC+T+ A  CG+Q+HA 
Sbjct: 295 MIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQ 354

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
           I +  L  +  + NAL+++Y+  G+I D  K F      D+V+WTS+++G+  +G  +  
Sbjct: 355 IFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGG 414

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL 459
           + LF E++ SG +PD      +L+AC++   V  G +         +     I    + +
Sbjct: 415 LTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICM 474

Query: 460 LGRAGRVKEAYELIKSMPFK----PDESVWGPLLGACKEH 495
             + G +  A     +M FK    PD   W  ++ +  +H
Sbjct: 475 YAKCGDIDSA-----NMTFKETKNPDIVSWSVMISSNAQH 509



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 115/387 (29%), Positives = 204/387 (52%), Gaps = 10/387 (2%)

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           ++ T + +++      SL +  L H   IK   +  +++ N+L+ +Y  C    D A+ +
Sbjct: 18  DSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCG-ETDVAKKL 76

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F+ M  +N VSW +LI+GY   G  +  + +FKE  +  + ++ ++FS A+  C  T  +
Sbjct: 77  FDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDL 136

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
             G+LIHA +   G G  + + NS++DMYC+   +  A   F+   E D ++WN++IAGY
Sbjct: 137 RLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGY 196

Query: 291 EKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACAT--LAALSCGQQVHAGIVRRGLDG 347
            + GS+ E L +  KM     + N +   S + AC +   +++ CG+ +H   V+ GLD 
Sbjct: 197 VRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDL 256

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY-----GAHGHGKEAIEL 402
           ++ +  AL+D YAK G++ D+ KIF  M D ++V + +M+ G+      A     EA+ L
Sbjct: 257 DVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYL 316

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           F EM   G++P    F ++L ACS     + G +    +  YN+  ++ I   +V+L   
Sbjct: 317 FFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSL 376

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLL 489
           +G +++  +   S P K D   W  L+
Sbjct: 377 SGSIEDGLKCFHSTP-KLDVVSWTSLI 402



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 143/272 (52%), Gaps = 3/272 (1%)

Query: 209 GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDA 268
           G+ ++  +++  V+    TG +  GKL H  +IK  F   L ++N++L MYC+      A
Sbjct: 14  GLPLDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVA 73

Query: 269 NQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATL 327
            + FD M ++++++WN++I+GY + G   E +N+F + +      + FTF++ ++ C   
Sbjct: 74  KKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRT 133

Query: 328 AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMM 387
             L  G+ +HA I   GL G + L N+LIDMY KCG I  ++ +F    + D V+W S++
Sbjct: 134 LDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLI 193

Query: 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTAC--SHAGLVDEGLKYFKSMNDYN 445
            GY   G   E + L  +M++ G+  +     + L AC  + +  ++ G           
Sbjct: 194 AGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLG 253

Query: 446 VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMP 477
           ++ +  +   ++D   + G +++A ++ K MP
Sbjct: 254 LDLDVVVGTALLDTYAKIGDLEDATKIFKLMP 285


>gi|255560101|ref|XP_002521068.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539637|gb|EEF41219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 579

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 182/558 (32%), Positives = 321/558 (57%), Gaps = 4/558 (0%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
            LI SY     I  AR +F++MP+R + +W  MI  Y+  N  ++   ++  M+   + P
Sbjct: 23  QLIASYGRINNIIPARNVFEKMPQRSINAWNSMIIAYSRTNYPDEVLNLYYRMISEGIKP 82

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           ++ T +  LKAC  +  L    ++   A+  G    ++V +S++++YA     MD A++V
Sbjct: 83  DSSTFTVTLKACSSLMDLDMGEIIWNQAVDFGYGFDVFVVSSVLNLYAKSG-KMDKAKIV 141

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F+ M  ++ VSWTT+ITG+A SG     + +++ M  E  E +       ++AC S G  
Sbjct: 142 FDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQKERTEGDGVVMVGLIQACTSLGDS 201

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
            FG  +H  +++     +  +  S++DMY +   L  A++ F+ +  K +I+W  +I+G+
Sbjct: 202 KFGLSVHGHMVRREMNMDNVLQTSLIDMYAKNGKLELASRVFEGIPYKSVISWGALISGF 261

Query: 291 EKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
            ++G +++ L    +M++  F P+  +  S ++ACA +  L  G+ +H  IV+R L  + 
Sbjct: 262 AQNGFANKTLASLVEMQNSGFKPDLVSLISSLSACAQVGNLKVGKSLHGHIVKR-LYLDK 320

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
               ALIDMYAKCG ++ ++ +F ++  RDL+ W +M+  YG HG G EA+ LF +M ++
Sbjct: 321 VSGTALIDMYAKCGALTFARALFDQIEPRDLILWNAMISSYGIHGDGIEALSLFLKMKET 380

Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYN-VNPNKEIYGCVVDLLGRAGRVKE 468
            + PD   F ++L+ACSH+GLV+EG  +F  + D + + P+++ Y C+VDLL RAG+V+E
Sbjct: 381 NITPDHATFASLLSACSHSGLVEEGQYWFHVLIDKSKIQPSEKHYACMVDLLSRAGQVEE 440

Query: 469 AYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA 528
           AY+LI+SM  KP  ++W  LL  C  H+   +G++ A ++L+  P+ +G Y+++SN ++ 
Sbjct: 441 AYQLIESMHIKPGLAIWVALLSGCLNHKNLLIGEMVAKKILESNPDDLGIYVLVSNFFSM 500

Query: 529 EGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRH 588
             KW++ A FRKIM+  G +K  G S +EV   +  F+  DK  +  Q +  +L++L   
Sbjct: 501 AKKWDDAAVFRKIMKNTGMRKVPGYSAVEVNGDLQAFLMEDKNHNQYQDILQILDILDNE 560

Query: 589 MNETAYEPDIDCLIHDLE 606
           M       + + +  D E
Sbjct: 561 MRSIRCFSETELVFQDTE 578



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 173/345 (50%), Gaps = 5/345 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + ++++  Y   G +++A+ +FD+M +RDVVSWT MI G+        A  ++  M +  
Sbjct: 121 VVSSVLNLYAKSGKMDKAKIVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQKER 180

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
              +   +  +++AC  +        VHG  ++  +     ++ SL+D+YA     ++ A
Sbjct: 181 TEGDGVVMVGLIQACTSLGDSKFGLSVHGHMVRREMNMDNVLQTSLIDMYAKNG-KLELA 239

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             VF  + +K+ +SW  LI+G+A +G     L    EM   G + +  S   ++ ACA  
Sbjct: 240 SRVFEGIPYKSVISWGALISGFAQNGFANKTLASLVEMQNSGFKPDLVSLISSLSACAQV 299

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
           G +  GK +H  ++K  +   +    +++DMY +   L+ A   FD++  +DLI WN +I
Sbjct: 300 GNLKVGKSLHGHIVKRLYLDKVS-GTALIDMYAKCGALTFARALFDQIEPRDLILWNAMI 358

Query: 288 AGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ-VHAGIVRRGL 345
           + Y   G   E L++F KMK    +P+  TF S+++AC+    +  GQ   H  I +  +
Sbjct: 359 SSYGIHGDGIEALSLFLKMKETNITPDHATFASLLSACSHSGLVEEGQYWFHVLIDKSKI 418

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIG 389
             +      ++D+ ++ G + ++ ++   M  +  L  W +++ G
Sbjct: 419 QPSEKHYACMVDLLSRAGQVEEAYQLIESMHIKPGLAIWVALLSG 463



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 125/261 (47%), Gaps = 20/261 (7%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           ++L T+LI  Y   G +E A  +F+ +P + V+SW  +I+G+      N+     VEM  
Sbjct: 220 NVLQTSLIDMYAKNGKLELASRVFEGIPYKSVISWGALISGFAQNGFANKTLASLVEMQN 279

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVE----NSLMDVYATCC 161
           +   P+  +L S L AC  + +L     +HG  +K      +Y++     +L+D+YA C 
Sbjct: 280 SGFKPDLVSLISSLSACAQVGNLKVGKSLHGHIVKR-----LYLDKVSGTALIDMYAKCG 334

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
            ++  AR +F+ ++ ++ + W  +I+ Y   G+G   L +F +M    +  +  +F+  +
Sbjct: 335 -ALTFARALFDQIEPRDLILWNAMISSYGIHGDGIEALSLFLKMKETNITPDHATFASLL 393

Query: 222 RACASTGWVSFGKL-IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-D 279
            AC+ +G V  G+   H  + K     +      ++D+  R   + +A Q  + M  K  
Sbjct: 394 SACSHSGLVEEGQYWFHVLIDKSKIQPSEKHYACMVDLLSRAGQVEEAYQLIESMHIKPG 453

Query: 280 LITWNTIIAGYEKSGSSECLN 300
           L  W  +++G        CLN
Sbjct: 454 LAIWVALLSG--------CLN 466


>gi|334185017|ref|NP_186807.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546765|sp|Q9SS97.2|PP205_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g01580
 gi|332640170|gb|AEE73691.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 188/568 (33%), Positives = 326/568 (57%), Gaps = 12/568 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV-RN 106
           + ++LI  Y   G + EA  +FDE+ + D+V+W+ M++G+       QA   F  MV  +
Sbjct: 98  VGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMAS 157

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           +V P+  TL +++ AC  + +      VHG  I+ G    + + NSL++ YA    +   
Sbjct: 158 DVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKS-RAFKE 216

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  +F  +  K+ +SW+T+I  Y  +G     L VF +M+ +G E N  +    ++ACA+
Sbjct: 217 AVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAA 276

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  G+  H   I+ G  + + V  +++DMY +     +A   F  +  KD+++W  +
Sbjct: 277 AHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVAL 336

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFS-PNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           I+G+  +G +   +  FS M  E  + P+      ++ +C+ L  L   +  H+ +++ G
Sbjct: 337 ISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIKYG 396

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
            D N  +  +L+++Y++CG++ ++ K+F+ ++ +D V WTS++ GYG HG G +A+E F+
Sbjct: 397 FDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKALETFN 456

Query: 405 EMVKSG-VRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGR 462
            MVKS  V+P+ + F+++L+ACSHAGL+ EGL+ FK M NDY + PN E Y  +VDLLGR
Sbjct: 457 HMVKSSEVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVNDYRLAPNLEHYAVLVDLLGR 516

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
            G +  A E+ K MPF P   + G LLGAC+ H+   + +  A ++ +L+ N  G Y+++
Sbjct: 517 VGDLDTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAETVAKKLFELESNHAGYYMLM 576

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           SN+Y  +G+WE   K R  ++  G KK +  S IE+R KV  F+A+D++    + VYG+L
Sbjct: 577 SNVYGVKGEWENVEKLRNSVKQRGIKKGLAESLIEIRRKVHRFVADDELHPEKEPVYGLL 636

Query: 583 EMLIRHMNETAYEPDID-CLIHDLEGET 609
           + L  HM E     D++ C+  + EG++
Sbjct: 637 KELDLHMKE-----DLENCVYFEYEGDS 659



 Score =  223 bits (568), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 122/430 (28%), Positives = 233/430 (54%), Gaps = 6/430 (1%)

Query: 64  EARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACK 123
           +AR +F EM +R +  W  ++   +      +    F  M R+E  P+ FTL   LKAC 
Sbjct: 12  DARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACG 71

Query: 124 GMKSLSNAALVHGMAIKEGLEGS-IYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSW 182
            ++ ++   ++HG   K+   GS +YV +SL+ +Y  C   ++  R+ F++++  + V+W
Sbjct: 72  ELREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRM-FDELEKPDIVTW 130

Query: 183 TTLITGYAHSGNGYGGLGVFKEMLLEG-VEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           +++++G+  +G+ Y  +  F+ M++   V  +  +    V AC        G+ +H  VI
Sbjct: 131 SSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVI 190

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLN 300
           + GF ++L ++NS+L+ Y +     +A   F  + EKD+I+W+T+IA Y ++G ++E L 
Sbjct: 191 RRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALL 250

Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360
           +F+ M  +   PN  T   ++ ACA    L  G++ H   +R+GL+  + ++ AL+DMY 
Sbjct: 251 VFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYM 310

Query: 361 KCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM-VKSGVRPDRIVFM 419
           KC +  ++  +FS +  +D+V+W +++ G+  +G    +IE F  M +++  RPD I+ +
Sbjct: 311 KCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMV 370

Query: 420 AVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
            VL +CS  G +++   +   +  Y  + N  I   +V+L  R G +  A ++   +  K
Sbjct: 371 KVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALK 430

Query: 480 PDESVWGPLL 489
            D  VW  L+
Sbjct: 431 -DTVVWTSLI 439



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 98/173 (56%), Gaps = 6/173 (3%)

Query: 259 YCR-FDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFT 316
           +CR F    DA Q F EMT++ L  WNT++    +     E L  FS M  +   P+ FT
Sbjct: 3   FCRKFSSSVDARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFT 62

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRG--LDGNLALANALIDMYAKCGNISDSQKIFSE 374
               + AC  L  ++ G+ +H G V++   L  +L + ++LI MY KCG + ++ ++F E
Sbjct: 63  LPVALKACGELREVNYGEMIH-GFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDE 121

Query: 375 MSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV-KSGVRPDRIVFMAVLTACS 426
           +   D+VTW+SM+ G+  +G   +A+E F  MV  S V PDR+  + +++AC+
Sbjct: 122 LEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACT 174


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 196/563 (34%), Positives = 322/563 (57%), Gaps = 7/563 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           ++  L+  Y   G IE A  +F  M   D +SW  +I+         +A   +  M ++ 
Sbjct: 417 VSNGLVNMYAKCGAIESASKIFQLMEATDRISWNTIISALDQNGNCEEAVMHYSLMRQSC 476

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           ++P+ F L S L +C G+K L+    VH  A+K GL+    V N L+ +Y  C  +M + 
Sbjct: 477 ISPSNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECG-AMSDY 535

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGL-GVFKEMLLEGVEMNPYSFSIAVRACAS 226
             VFN M   ++VSW T++   A S      +  VF  M+  G+  N  +F   + A + 
Sbjct: 536 WKVFNSMAEHDEVSWNTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKVTFINLLAALSP 595

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLITWNT 285
              +  GK +HAAV+KHG   +  V N+++  Y +   +      F  M+++ D I+WN+
Sbjct: 596 LSVLELGKQVHAAVMKHGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWNS 655

Query: 286 IIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I+GY  +G+  E ++    M       +C TF+ I+ ACA++AAL  G ++HA  +R  
Sbjct: 656 MISGYIYNGNLQEAMDCVWLMIHSGQIMDCCTFSIILNACASVAALERGMELHAFGIRSH 715

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           L+ ++ + +AL+DMY+KCG +  + K+F+ M+ R+  +W SM+ GY  HG G++AIE+F+
Sbjct: 716 LESDVVVESALVDMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKAIEIFE 775

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
           EM++S   PD + F++VL+ACSHAGLV+ GL+YF+ M D+ + P  E Y CV+DLLGRAG
Sbjct: 776 EMLRSRESPDHVTFVSVLSACSHAGLVERGLEYFEMMPDHGILPQIEHYSCVIDLLGRAG 835

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLP---NLGKLAALRVLDLKPNMMGTYII 521
           ++ +  E I+ MP +P+  +W  +L AC++ +     +LG+ A+  +L+++P     Y++
Sbjct: 836 KIDKIKEYIQRMPIEPNALIWRTVLVACRQSKDGSNIDLGREASRVLLEIEPQNPVNYVL 895

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGV 581
            SN +AA G WE+ AK R  MR    KKE G SW+ + D V  FIA D+   +T+ +Y  
Sbjct: 896 ASNFHAATGMWEDTAKARTAMRQATEKKEAGRSWVTLNDGVHTFIAGDRSHPNTKEIYEK 955

Query: 582 LEMLIRHMNETAYEPDIDCLIHD 604
           L  LI+++    Y P  +  ++D
Sbjct: 956 LNFLIQNIRNAGYVPLTEYALYD 978



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 128/480 (26%), Positives = 240/480 (50%), Gaps = 24/480 (5%)

Query: 40  LIPKGPS---ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQA 96
           LI +G +    L  +L+ SY     +  A  +FDEMPER+ VSWT +++GY       +A
Sbjct: 87  LIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLHGIAEEA 146

Query: 97  WTVFVEMVRNEVN----PNAFTLSSVLKACK--GMKSLSNAALVHGMAIKEGLEGSIYVE 150
           + VF  M+R EV     P +FT  ++L+AC+  G   L  A  VHG+  K     +  V 
Sbjct: 147 FRVFRAMLR-EVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGLVSKTEYASNTTVC 205

Query: 151 NSLMDVYATCCISMDN-ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLL-- 207
           N+L+ +Y +C +     A+ VF+    ++ ++W  L++ YA  G+      +FK+M    
Sbjct: 206 NALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVASTFTLFKDMQRGD 265

Query: 208 EGVEMNP--YSF-SIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264
             +++ P  ++F S+   A  S+G  +    +   V+K G  S+L V ++++  + R   
Sbjct: 266 SRIQLRPTEHTFGSLITAASLSSGSSAVLDQVLVWVLKSGCSSDLYVGSALVSAFARHGL 325

Query: 265 LSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAA 323
             +A   F  + +K+ +T N +I G  +   S E + +F   ++     N  T+  +++A
Sbjct: 326 TDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIFVGTRNT-VDVNADTYVVLLSA 384

Query: 324 CATLA----ALSCGQQVHAGIVRRGL-DGNLALANALIDMYAKCGNISDSQKIFSEMSDR 378
            A  +     L  G+ VH  ++R GL D  +A++N L++MYAKCG I  + KIF  M   
Sbjct: 385 LAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKIFQLMEAT 444

Query: 379 DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYF 438
           D ++W +++     +G+ +EA+  +  M +S + P     ++ L++C+   L+  G +  
Sbjct: 445 DRISWNTIISALDQNGNCEEAVMHYSLMRQSCISPSNFALISSLSSCAGLKLLTAGQQVH 504

Query: 439 KSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLP 498
                + ++ +  +   +V + G  G + + +++  SM  + DE  W  ++G     + P
Sbjct: 505 CDAVKWGLDLDTSVSNVLVKMYGECGAMSDYWKVFNSMA-EHDEVSWNTMMGVMASSQTP 563



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 149/328 (45%), Gaps = 26/328 (7%)

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG- 294
           +H  +IK G   +L + N +++ Y +   L+ A+Q FDEM E++ ++W  +++GY   G 
Sbjct: 83  LHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLHGI 142

Query: 295 SSECLNMFSKMKSERFS---PNCFTFTSIIAACATLAA--LSCGQQVHAGIVRRGLDGNL 349
           + E   +F  M  E  +   P  FTF +++ AC       L    QVH  + +     N 
Sbjct: 143 AEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGLVSKTEYASNT 202

Query: 350 ALANALIDMYAKC--GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
            + NALI MY  C  G    +Q++F     RDL+TW ++M  Y   G       LF +M 
Sbjct: 203 TVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVASTFTLFKDMQ 262

Query: 408 KSG----VRPDRIVFMAVLT----ACSHAGLVDEGLKY-FKSMNDYNVNPNKEIYGCVVD 458
           +      +RP    F +++T    +   + ++D+ L +  KS      + +  +   +V 
Sbjct: 263 RGDSRIQLRPTEHTFGSLITAASLSSGSSAVLDQVLVWVLKS----GCSSDLYVGSALVS 318

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKL--AALRVLDLKPNMM 516
              R G   EA ++  S+  K   ++ G ++G  ++       K+       +D+  +  
Sbjct: 319 AFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIFVGTRNTVDVNAD-- 376

Query: 517 GTYIILSNIYAAEGKWEEFAKFRKIMRG 544
            TY++L +  A     EE  +  +++ G
Sbjct: 377 -TYVVLLSALAEYSISEEGLRIGRVVHG 403



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 59/99 (59%), Gaps = 3/99 (3%)

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
           + +H  +++RGL+ +L L N L++ YAK   ++ + ++F EM +R+ V+WT ++ GY  H
Sbjct: 81  ENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLH 140

Query: 394 GHGKEAIELFDEM---VKSGVRPDRIVFMAVLTACSHAG 429
           G  +EA  +F  M   V++G RP    F  +L AC   G
Sbjct: 141 GIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGG 179



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 6/186 (3%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++ + L+  Y   G ++ A  LF+ M +R+  SW  MI+GY       +A  +F EM+R+
Sbjct: 721 VVESALVDMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKAIEIFEEMLRS 780

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
             +P+  T  SVL AC     +        M    G+   I   + ++D+       +D 
Sbjct: 781 RESPDHVTFVSVLSACSHAGLVERGLEYFEMMPDHGILPQIEHYSCVIDLLGRAG-KIDK 839

Query: 167 ARLVFNDMKWK-NDVSWTTLITGYAHSGNGYGGLGVFKE---MLLEGVEMNPYSFSIAVR 222
            +     M  + N + W T++     S +G   + + +E   +LLE    NP ++ +A  
Sbjct: 840 IKEYIQRMPIEPNALIWRTVLVACRQSKDG-SNIDLGREASRVLLEIEPQNPVNYVLASN 898

Query: 223 ACASTG 228
             A+TG
Sbjct: 899 FHAATG 904


>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 684

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 196/575 (34%), Positives = 309/575 (53%), Gaps = 10/575 (1%)

Query: 38  PPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAW 97
           PP     P  LA  LI  Y      E AR +    P R+VVSWT +++G       + A 
Sbjct: 39  PP-----PPFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTSLVSGLAQNGHFSTAL 93

Query: 98  TVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVY 157
             F EM R  V PN FT   V KA   ++       +H +A+K G    ++V  S  D+Y
Sbjct: 94  FEFFEMRREGVAPNDFTFPCVFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMY 153

Query: 158 ATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSF 217
               +  D+AR +F+++  +N  +W   I+     G     +  F E    G + N  +F
Sbjct: 154 CKTRLR-DDARKLFDEIPERNLETWNAYISNSVTDGRPKEAIEAFIEFRRIGGQPNSITF 212

Query: 218 SIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE 277
              + AC+    +  G  +H  V + GF +++ V N ++D Y +   +  +   F EM  
Sbjct: 213 CGFLNACSDGLLLDLGMQMHGLVFRSGFDTDVSVYNGLIDFYGKCKQIRSSEIIFAEMGM 272

Query: 278 KDLITWNTIIAGYEKSGSSECLN-MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQV 336
           K+ ++W +++A Y ++   E  + ++ + + E    + F  +S+++ACA +A L  G+ +
Sbjct: 273 KNAVSWCSLVAAYVQNHEDEKASVLYLRSRKEIVETSDFMISSVLSACAGMAGLELGRSI 332

Query: 337 HAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHG 396
           HA  V+  ++ N+ + +AL+DMY KCG I DS++ F EM +++LVT  S++ GY   G  
Sbjct: 333 HAHAVKACVERNIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTLNSLIGGYAHQGQV 392

Query: 397 KEAIELFDEMVKSGV--RPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIY 453
             A+ LF++M   G    P+ + F+++L+ACS AG V+ G+K F SM   Y + P  E Y
Sbjct: 393 DMALALFEDMAPRGCGPAPNYMTFVSLLSACSRAGAVENGMKIFDSMKSTYGIEPGAEHY 452

Query: 454 GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513
            C+VD+LGRAG V++A+E IK MP KP  SVWG L  AC+ H  P+LG LAA  +  L P
Sbjct: 453 SCIVDMLGRAGMVEQAFEFIKKMPIKPTISVWGALQNACRMHGKPHLGILAAENLFKLDP 512

Query: 514 NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGS 573
              G +++LSN +AA G+W E    R+ M+G+G KK  G SWI V+++V  F A D+   
Sbjct: 513 KDSGNHVLLSNTFAAAGRWAEANTVREEMKGVGIKKGAGYSWITVKNQVHAFQAKDRSHK 572

Query: 574 HTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
             + +  +L  L   M    Y+PD+   ++DLE E
Sbjct: 573 MNKEIQTMLTKLRNKMEAAGYKPDLKLSLYDLEEE 607



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 143/282 (50%), Gaps = 11/282 (3%)

Query: 216 SFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVM-NSILDMYCRFDCLSDANQYFDE 274
           +  + ++   ST  +  G+++HA ++K       P + N +++MY + D    A      
Sbjct: 8   ALGLLLKNAISTSSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRL 67

Query: 275 MTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG 333
              +++++W ++++G  ++G  S  L  F +M+ E  +PN FTF  +  A A+L     G
Sbjct: 68  TPARNVVSWTSLVSGLAQNGHFSTALFEFFEMRREGVAPNDFTFPCVFKAVASLRLPVTG 127

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
           +Q+HA  V+ G   ++ +  +  DMY K     D++K+F E+ +R+L TW + +      
Sbjct: 128 KQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTD 187

Query: 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK----YFKSMNDYNVNPN 449
           G  KEAIE F E  + G +P+ I F   L ACS   L+D G++     F+S  D +V+  
Sbjct: 188 GRPKEAIEAFIEFRRIGGQPNSITFCGFLNACSDGLLLDLGMQMHGLVFRSGFDTDVS-- 245

Query: 450 KEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
             +Y  ++D  G+  +++ +  +   M  K   S W  L+ A
Sbjct: 246 --VYNGLIDFYGKCKQIRSSEIIFAEMGMKNAVS-WCSLVAA 284


>gi|297805814|ref|XP_002870791.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316627|gb|EFH47050.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 674

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 188/514 (36%), Positives = 290/514 (56%), Gaps = 7/514 (1%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+  Y + G +E AR +FD M  RDV+SW  MI+GY      N A  +F  MV   V+P+
Sbjct: 158 LLAMYMNFGRVEMARNVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNEGVDPD 217

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
             T+ S+L  C  +K L     VH +  ++ L   I V+N+L+++Y  C   MD AR VF
Sbjct: 218 HATIVSMLPVCGHLKGLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCG-RMDEARFVF 276

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
             M+ ++ ++WT +I GY   G+    L + + M  EGV  N  + +  V AC     ++
Sbjct: 277 GRMERRDVITWTCMINGYIEDGDVENALELCRLMQFEGVRPNAVTIASLVSACGDALKLN 336

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG-Y 290
            GK +H   I+    S++ +  S++ MY +   +    + F   +      W+ IIAG  
Sbjct: 337 DGKCLHGWAIRQKVCSDIIIETSLISMYAKCKHIDLCFRVFSGASRNHTGPWSAIIAGCV 396

Query: 291 EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           +     + L++F +M+ E   PN  T  S++ A ATLA L     +H  + + G   +L 
Sbjct: 397 QNELVRDALDLFKRMRREDVEPNIATLNSLLPAYATLADLRQTMNIHCYLTKTGFMSSLD 456

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDR----DLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            A  L+ +Y+KCG +  + KIF+ + ++    D+V W +++ GYG HG G  A+++F EM
Sbjct: 457 AATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEM 516

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGR 465
           V+SGV P+ I F + L ACSH+GLV+EGL  F  M   Y        Y C+VDLLGRAGR
Sbjct: 517 VRSGVTPNEITFTSALNACSHSGLVEEGLTLFSFMLEHYKTLARSNHYTCIVDLLGRAGR 576

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           + EAY LI ++PF+P  ++WG LL AC  H    LG++AA ++ +L+P   G Y++L+NI
Sbjct: 577 LDEAYNLITTIPFEPTSTIWGALLAACVTHENVQLGEMAANKLFELEPENTGNYVLLANI 636

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVR 559
           YAA G+W++  K R +M  +G +K+ G S IE+R
Sbjct: 637 YAALGRWKDMEKVRNMMENVGLRKKPGHSTIEIR 670



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 121/455 (26%), Positives = 225/455 (49%), Gaps = 8/455 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           IL+T L  +Y   G I  AR LFDEMP+  ++S+ ++I  Y     ++ A  VF+ MV  
Sbjct: 51  ILST-LSVTYALCGHIAYARKLFDEMPQSSLLSYNIVIRMYVRDGLYHDAINVFIRMVSE 109

Query: 107 EVN--PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
            +   P+ +T   V KA   +KS+S   ++HG  ++       YV+N+L+ +Y      +
Sbjct: 110 GIKCVPDGYTYPFVAKAAGELKSISLGLVIHGRILRSWFGMDKYVQNALLAMYMNFG-RV 168

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           + AR VF+ MK ++ +SW T+I+GY  +G     L +F  M+ EGV+ +  +    +  C
Sbjct: 169 EMARNVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNEGVDPDHATIVSMLPVC 228

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
                +  G+ +H  V +   G  + V N++++MY +   + +A   F  M  +D+ITW 
Sbjct: 229 GHLKGLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFGRMERRDVITWT 288

Query: 285 TIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +I GY + G  E  L +   M+ E   PN  T  S+++AC     L+ G+ +H   +R+
Sbjct: 289 CMINGYIEDGDVENALELCRLMQFEGVRPNAVTIASLVSACGDALKLNDGKCLHGWAIRQ 348

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
            +  ++ +  +LI MYAKC +I    ++FS  S      W++++ G   +   ++A++LF
Sbjct: 349 KVCSDIIIETSLISMYAKCKHIDLCFRVFSGASRNHTGPWSAIIAGCVQNELVRDALDLF 408

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
             M +  V P+     ++L A +    + + +     +       + +    +V +  + 
Sbjct: 409 KRMRREDVEPNIATLNSLLPAYATLADLRQTMNIHCYLTKTGFMSSLDAATGLVHVYSKC 468

Query: 464 GRVKEAYELIKSMPFK---PDESVWGPLLGACKEH 495
           G ++ A+++   +  K    D  +WG L+     H
Sbjct: 469 GTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMH 503



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 113/422 (26%), Positives = 207/422 (49%), Gaps = 10/422 (2%)

Query: 99  VFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA 158
           VF+   +N ++   +   S+L      +S+S    +H   I  G   S ++ ++L   YA
Sbjct: 4   VFLRRAKNALSVKQY--QSLLNHYAATQSISKTKALHCHVITGG-RVSGHILSTLSVTYA 60

Query: 159 TCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP--YS 216
            C   +  AR +F++M   + +S+  +I  Y   G  +  + VF  M+ EG++  P  Y+
Sbjct: 61  LCG-HIAYARKLFDEMPQSSLLSYNIVIRMYVRDGLYHDAINVFIRMVSEGIKCVPDGYT 119

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
           +    +A      +S G +IH  +++  FG +  V N++L MY  F  +  A   FD M 
Sbjct: 120 YPFVAKAAGELKSISLGLVIHGRILRSWFGMDKYVQNALLAMYMNFGRVEMARNVFDVMK 179

Query: 277 EKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ 335
            +D+I+WNT+I+GY ++G  ++ L MF  M +E   P+  T  S++  C  L  L  G+ 
Sbjct: 180 NRDVISWNTMISGYYRNGYMNDALMMFDWMVNEGVDPDHATIVSMLPVCGHLKGLEMGRN 239

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
           VH  +  + L   + + NAL++MY KCG + +++ +F  M  RD++TWT M+ GY   G 
Sbjct: 240 VHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFGRMERRDVITWTCMINGYIEDGD 299

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455
            + A+EL   M   GVRP+ +   ++++AC  A  +++G           V  +  I   
Sbjct: 300 VENALELCRLMQFEGVRPNAVTIASLVSACGDALKLNDGKCLHGWAIRQKVCSDIIIETS 359

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKP 513
           ++ +  +   +   + +  S   +     W  ++  C ++ L    L     +R  D++P
Sbjct: 360 LISMYAKCKHIDLCFRVF-SGASRNHTGPWSAIIAGCVQNELVRDALDLFKRMRREDVEP 418

Query: 514 NM 515
           N+
Sbjct: 419 NI 420



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 145/341 (42%), Gaps = 44/341 (12%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I+ T+LI  Y     I+    +F          W+ +IAG         A  +F  M R 
Sbjct: 355 IIETSLISMYAKCKHIDLCFRVFSGASRNHTGPWSAIIAGCVQNELVRDALDLFKRMRRE 414

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           +V PN  TL+S+L A   +  L     +H    K G   S+     L+ VY+ C  ++++
Sbjct: 415 DVEPNIATLNSLLPAYATLADLRQTMNIHCYLTKTGFMSSLDAATGLVHVYSKCG-TLES 473

Query: 167 ARLVFNDM----KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
           A  +FN +    K K+ V W  LI+GY   G+G+  L VF EM+  GV  N  +F+ A+ 
Sbjct: 474 AHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALN 533

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           AC+ +G V  G  + + +++H                  +  L+ +N Y           
Sbjct: 534 ACSHSGLVEEGLTLFSFMLEH------------------YKTLARSNHY----------- 564

Query: 283 WNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
              I+    ++G   E  N+ + +    F P    + +++AAC T   +  G+     + 
Sbjct: 565 -TCIVDLLGRAGRLDEAYNLITTIP---FEPTSTIWGALLAACVTHENVQLGEMAANKLF 620

Query: 342 RRGLD--GNLALANALIDMYAKCGNISDSQKIFSEMSDRDL 380
               +  GN  L   L ++YA  G   D +K+ + M +  L
Sbjct: 621 ELEPENTGNYVL---LANIYAALGRWKDMEKVRNMMENVGL 658


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 198/573 (34%), Positives = 307/573 (53%), Gaps = 54/573 (9%)

Query: 40  LIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTV 99
           L P+  ++    ++ +Y   G +EEAR LF+   E DV+SW  +++GY  +   ++A  +
Sbjct: 156 LAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEAREL 215

Query: 100 FVEMVRNEVNPNAFTLSSVLKACKGM--KSLSNAALVHGMAIKEGLEGSIYVENSLMDVY 157
           F  M   +V      +S   +    +  + L +AA V            ++   +++  Y
Sbjct: 216 FDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR----------DVFTWTAVVSGY 265

Query: 158 ATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSF 217
           A   + ++ AR VF+ M  +N VSW  ++  Y           + + M+ E  E+     
Sbjct: 266 AQNGM-LEEARRVFDAMPERNAVSWNAMVAAY-----------IQRRMMDEAKEL----- 308

Query: 218 SIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE 277
              +  C                       N+   N++L  Y +   L +A   FD M +
Sbjct: 309 -FNMMPC----------------------RNVASWNTMLTGYAQAGMLEEAKAVFDTMPQ 345

Query: 278 KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQV 336
           KD ++W  ++A Y + G S E L +F +M       N   F  +++ CA +AAL CG Q+
Sbjct: 346 KDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQL 405

Query: 337 HAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHG 396
           H  ++R G      + NAL+ MY KCGN+ D++  F EM +RD+V+W +M+ GY  HG G
Sbjct: 406 HGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFG 465

Query: 397 KEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGC 455
           KEA+E+FD M  +  +PD I  + VL ACSH+GLV++G+ YF SM+ D+ V    E Y C
Sbjct: 466 KEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTC 525

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM 515
           ++DLLGRAGR+ EA++L+K MPF+PD ++WG LLGA + HR P LG+ AA ++ +L+P  
Sbjct: 526 MIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPEN 585

Query: 516 MGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHT 575
            G Y++LSNIYA+ GKW +  K R +M   G KK  G SWIEV++KV  F A D +    
Sbjct: 586 AGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEK 645

Query: 576 QYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           + +Y  LE L   M +  Y    D ++HD+E E
Sbjct: 646 EKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEE 678



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 108/467 (23%), Positives = 188/467 (40%), Gaps = 112/467 (23%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIA--------------- 85
           +P   S+    +I S+ + GL+  AR  FD  PE+D VSW  M+A               
Sbjct: 126 MPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF 185

Query: 86  ----------------GYTSFNCHNQAWTVFVEMVRNEV------------NPNAFTLSS 117
                           GY  +   ++A  +F  M   +V              +      
Sbjct: 186 NSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARR 245

Query: 118 VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM----------DNA 167
           +  A       +  A+V G A    LE +  V +++ +  A    +M          D A
Sbjct: 246 LFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEA 305

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSG--------------------------NGYGG--- 198
           + +FN M  +N  SW T++TGYA +G                             GG   
Sbjct: 306 KELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSE 365

Query: 199 --LGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSIL 256
             L +F EM   G  +N  +F+  +  CA    +  G  +H  +I+ G+G    V N++L
Sbjct: 366 ETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALL 425

Query: 257 DMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCF 315
            MY +   + DA   F+EM E+D+++WNT+IAGY + G   E L +F  M++    P+  
Sbjct: 426 AMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDI 485

Query: 316 TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN------------ALIDMYAKCG 363
           T   ++AAC+           H+G+V +G+    ++ +             +ID+  + G
Sbjct: 486 TLVGVLAACS-----------HSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAG 534

Query: 364 NISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGH---GKEAIELFDEM 406
            ++++  +  +M  + D   W +++     H +   G+ A E   E+
Sbjct: 535 RLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFEL 581



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 121/277 (43%), Gaps = 44/277 (15%)

Query: 253 NSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSP 312
           N++L        L+DA   FDEM  +D +T+N +I+ +   G       +  +  E+   
Sbjct: 104 NTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEK--- 160

Query: 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIF 372
           +  ++  ++AA      +   +    G+     + ++   NAL+  Y + G +S+++++F
Sbjct: 161 DAVSWNGMLAAYVRNGRVEEAR----GLFNSRTEWDVISWNALMSGYVQWGKMSEARELF 216

Query: 373 SEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD 432
             M  RD+V+W  M+ GY   G   EA  LFD    + VR D   + AV++  +  G+++
Sbjct: 217 DRMPGRDVVSWNIMVSGYARRGDMVEARRLFD---AAPVR-DVFTWTAVVSGYAQNGMLE 272

Query: 433 EGLKYFKSMND-------------------------YNVNPNKEIYGCVVDLLG--RAGR 465
           E  + F +M +                         +N+ P + +      L G  +AG 
Sbjct: 273 EARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGM 332

Query: 466 VKEAYELIKSMPFKPDESVWGPLL-----GACKEHRL 497
           ++EA  +  +MP K D   W  +L     G C E  L
Sbjct: 333 LEEAKAVFDTMPQK-DAVSWAAMLAAYSQGGCSEETL 368



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 9/147 (6%)

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           L+  +  +N  I  + + G ++D++++F+ M  R   T+ +M+ GY A+G    A  LF 
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLF- 92

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
              ++  RPD   +  +L    HA  V   L   + + D     +   Y  ++      G
Sbjct: 93  ---RAIPRPDNYSYNTLL----HALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHG 145

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGA 491
            V  A       P K D   W  +L A
Sbjct: 146 LVSLARHYFDLAPEK-DAVSWNGMLAA 171


>gi|242091211|ref|XP_002441438.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
 gi|241946723|gb|EES19868.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
          Length = 771

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 187/523 (35%), Positives = 294/523 (56%), Gaps = 3/523 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L   L+  Y   G +E +  +F+ M E++ VSW   +  +     H     +F  M  +E
Sbjct: 250 LGNALVDMYGKFGDLESSMRVFNGMQEKNEVSWNSALGCFAHAGFHEDVLEMFRVMSEHE 309

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V P + TLSS+L A   +        VHG +I+  +E  I++ NSLMD+YA     ++ A
Sbjct: 310 VTPGSVTLSSLLPALVDLGYFHLGKEVHGYSIRRAMESDIFIANSLMDMYAKFGC-LEKA 368

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             +F +++ +N VSW  +I   A +G       +  EM   G   N ++    + AC+  
Sbjct: 369 SAIFENIEGRNVVSWNAMIANLAQNGAETEAFSLVIEMQKNGECPNSFTLVNLLPACSRV 428

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             V  GK IHA  I     S+L V N+++D+Y +   LS A   FD  +EKD +++NT+I
Sbjct: 429 ASVKMGKQIHAWSIHRSLMSDLFVSNALIDVYAKCGQLSVAQDIFDR-SEKDDVSYNTLI 487

Query: 288 AGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            GY +S    E L++F +M+S     +  +F   ++ACA L+A   G+++H  +VRR L+
Sbjct: 488 VGYSQSQCCFESLHLFQQMRSAGIEYDAVSFMGCLSACANLSAFKQGKEIHGVLVRRLLN 547

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            +  LAN+L+D+Y K G ++ + KIF+ ++ +D+ +W +M++GYG HG    A ELFD M
Sbjct: 548 THPFLANSLLDLYTKGGMLATASKIFNRITRKDVASWNTMILGYGMHGQIDVAFELFDLM 607

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
              GV  D + ++AVL+ACSH GLVD G KYF  M   N+ P +  Y C+VDLLGRAG++
Sbjct: 608 KDDGVDYDHVSYIAVLSACSHGGLVDRGKKYFSQMIAQNIKPQQMHYACMVDLLGRAGQL 667

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            E+ E+I +MPF  +  VWG LLG+C+ H    L +LAA  + +LKP   G Y +L N+Y
Sbjct: 668 SESVEIITNMPFPANSDVWGALLGSCRIHGDIELARLAAEHLFELKPEHSGYYTLLRNMY 727

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIAND 569
           +  G W E  + + +M+    +K    SW++  +K+  F+  D
Sbjct: 728 SESGMWNEANEIKTLMKSRKVQKNPAYSWVQSGNKLQAFLVGD 770



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 124/423 (29%), Positives = 234/423 (55%), Gaps = 4/423 (0%)

Query: 68  LFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKS 127
           +FDEMP RD+VSW  +++   +      A    V M+R+ +  N  +L SV+ AC   + 
Sbjct: 169 VFDEMPARDIVSWNSLVSALLTNGMLEDAKRAVVGMMRSGIPVNVASLVSVVPACGTERD 228

Query: 128 LSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLIT 187
                 VHG+ +K GL+  + + N+L+D+Y      ++++  VFN M+ KN+VSW + + 
Sbjct: 229 EGFGLSVHGLVLKSGLDSVVNLGNALVDMYGKFG-DLESSMRVFNGMQEKNEVSWNSALG 287

Query: 188 GYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGS 247
            +AH+G     L +F+ M    V     + S  + A    G+   GK +H   I+    S
Sbjct: 288 CFAHAGFHEDVLEMFRVMSEHEVTPGSVTLSSLLPALVDLGYFHLGKEVHGYSIRRAMES 347

Query: 248 NLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMK 306
           ++ + NS++DMY +F CL  A+  F+ +  +++++WN +IA   ++G+ +E  ++  +M+
Sbjct: 348 DIFIANSLMDMYAKFGCLEKASAIFENIEGRNVVSWNAMIANLAQNGAETEAFSLVIEMQ 407

Query: 307 SERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNIS 366
                PN FT  +++ AC+ +A++  G+Q+HA  + R L  +L ++NALID+YAKCG +S
Sbjct: 408 KNGECPNSFTLVNLLPACSRVASVKMGKQIHAWSIHRSLMSDLFVSNALIDVYAKCGQLS 467

Query: 367 DSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS 426
            +Q IF + S++D V++ ++++GY       E++ LF +M  +G+  D + FM  L+AC+
Sbjct: 468 VAQDIF-DRSEKDDVSYNTLIVGYSQSQCCFESLHLFQQMRSAGIEYDAVSFMGCLSACA 526

Query: 427 HAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWG 486
           +     +G +    +    +N +  +   ++DL  + G +  A ++   +  K D + W 
Sbjct: 527 NLSAFKQGKEIHGVLVRRLLNTHPFLANSLLDLYTKGGMLATASKIFNRITRK-DVASWN 585

Query: 487 PLL 489
            ++
Sbjct: 586 TMI 588



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 116/435 (26%), Positives = 203/435 (46%), Gaps = 10/435 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPER--DVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           LA  L+ SY     I  AR +    P R      W  +     S    ++A  V+  MVR
Sbjct: 40  LAGALLLSYAALRDIPSARLILRHHPLRLRSAFLWNSLSRALASAGLPSEALRVYNCMVR 99

Query: 106 NEVNPNAFTLSSVLKACKGMKSL-----SNAALVHGMAIKEG-LEGSIYVENSLMDVYAT 159
           + V P+  T    L A            +  A +H  A++ G L   ++  N+L+  YA 
Sbjct: 100 SGVRPDDRTFPFALHAAAAAVVAEAEHPAKGAELHAAALRRGLLLADVFAGNTLVTFYAA 159

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
                 +AR VF++M  ++ VSW +L++    +G           M+  G+ +N  S   
Sbjct: 160 -RGRAADARRVFDEMPARDIVSWNSLVSALLTNGMLEDAKRAVVGMMRSGIPVNVASLVS 218

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
            V AC +     FG  +H  V+K G  S + + N+++DMY +F  L  + + F+ M EK+
Sbjct: 219 VVPACGTERDEGFGLSVHGLVLKSGLDSVVNLGNALVDMYGKFGDLESSMRVFNGMQEKN 278

Query: 280 LITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
            ++WN+ +  +  +G  E  L MF  M     +P   T +S++ A   L     G++VH 
Sbjct: 279 EVSWNSALGCFAHAGFHEDVLEMFRVMSEHEVTPGSVTLSSLLPALVDLGYFHLGKEVHG 338

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
             +RR ++ ++ +AN+L+DMYAK G +  +  IF  +  R++V+W +M+     +G   E
Sbjct: 339 YSIRRAMESDIFIANSLMDMYAKFGCLEKASAIFENIEGRNVVSWNAMIANLAQNGAETE 398

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVD 458
           A  L  EM K+G  P+    + +L ACS    V  G +        ++  +  +   ++D
Sbjct: 399 AFSLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQIHAWSIHRSLMSDLFVSNALID 458

Query: 459 LLGRAGRVKEAYELI 473
           +  + G++  A ++ 
Sbjct: 459 VYAKCGQLSVAQDIF 473



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 178/375 (47%), Gaps = 27/375 (7%)

Query: 119 LKACKGMKSLSNAALVHGMAIKEG-LEGSIYVENSLMDVYATCCISMDNARLVF--NDMK 175
           L  C G   L   A  H  ++  G L  S+ +  +L+  YA     + +ARL+   + ++
Sbjct: 11  LHQCGGNSLLLRRA--HAASLVSGALTASLPLAGALLLSYAAL-RDIPSARLILRHHPLR 67

Query: 176 WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSF--- 232
            ++   W +L    A +G     L V+  M+  GV  +  +F  A+ A A+         
Sbjct: 68  LRSAFLWNSLSRALASAGLPSEALRVYNCMVRSGVRPDDRTFPFALHAAAAAVVAEAEHP 127

Query: 233 --GKLIHAAVIKHGFG-SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
             G  +HAA ++ G   +++   N+++  Y      +DA + FDEM  +D+++WN++++ 
Sbjct: 128 AKGAELHAAALRRGLLLADVFAGNTLVTFYAARGRAADARRVFDEMPARDIVSWNSLVSA 187

Query: 290 YEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
              +G  E        M       N  +  S++ AC T      G  VH  +++ GLD  
Sbjct: 188 LLTNGMLEDAKRAVVGMMRSGIPVNVASLVSVVPACGTERDEGFGLSVHGLVLKSGLDSV 247

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           + L NAL+DMY K G++  S ++F+ M +++ V+W S +  +   G  ++ +E+F  M +
Sbjct: 248 VNLGNALVDMYGKFGDLESSMRVFNGMQEKNEVSWNSALGCFAHAGFHEDVLEMFRVMSE 307

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYF---KSMNDYNVNPNKE----IYGCVVDLLG 461
             V P  +   ++L A     LVD G  YF   K ++ Y++    E    I   ++D+  
Sbjct: 308 HEVTPGSVTLSSLLPA-----LVDLG--YFHLGKEVHGYSIRRAMESDIFIANSLMDMYA 360

Query: 462 RAGRVKEAYELIKSM 476
           + G +++A  + +++
Sbjct: 361 KFGCLEKASAIFENI 375


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 194/620 (31%), Positives = 324/620 (52%), Gaps = 40/620 (6%)

Query: 22  IKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWT 81
           +KQ      K  + SDP    +  +    +      + G +  AR +FD +P+  +  W 
Sbjct: 23  LKQIHSHTIKMGLSSDPLFQKRVIAFCCAH------ESGKMIYARQVFDAIPQPTLFIWN 76

Query: 82  VMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKE 141
            MI GY+  N      ++++ M+ + + P+ FT   +LK      +L    ++   A+K 
Sbjct: 77  TMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAVKH 136

Query: 142 GLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGV 201
           G + +++V+ + + +++ C + +D AR VF+       V+W  +++GY           +
Sbjct: 137 GFDSNLFVQKAFIHMFSLCRL-VDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKML 195

Query: 202 FKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR 261
           F EM   GV  N  +  + + AC+    +  GK I+  +       NL + N ++DM+  
Sbjct: 196 FIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAA 255

Query: 262 FDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS------------------------- 296
              + +A   FD M  +D+I+W +I+ G+   G                           
Sbjct: 256 CGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGY 315

Query: 297 -------ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
                  E L +F +M+     P+ FT  SI+ ACA L AL  G+ V   I +  +  + 
Sbjct: 316 LRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDT 375

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
            + NALIDMY KCGN+  ++K+F EM  +D  TWT+M++G   +GHG+EA+ +F  M+++
Sbjct: 376 FVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEA 435

Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKE 468
            + PD I ++ VL AC+HAG+V++G  +F SM   + + PN   YGC+VDLLGRAGR++E
Sbjct: 436 SITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEE 495

Query: 469 AYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA 528
           A+E+I +MP KP+  VWG LLGAC+ H+   L ++AA ++L+L+P     Y++L NIYAA
Sbjct: 496 AHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAVYVLLCNIYAA 555

Query: 529 EGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRH 588
             +WE   + RK+M   G KK  G S +E+   V  F+A D+    ++ +Y  LE +++ 
Sbjct: 556 CKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLENMMQD 615

Query: 589 MNETAYEPDIDCLIHDLEGE 608
           + +  Y PD   +  DL  E
Sbjct: 616 LIKAGYSPDTSEVFLDLGEE 635



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 116/414 (28%), Positives = 195/414 (47%), Gaps = 53/414 (12%)

Query: 117 SVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI----SMDNARLVFN 172
           S+L+ CK M  L     +H   IK GL      +     V A CC      M  AR VF+
Sbjct: 12  SLLEKCKSMYQLKQ---IHSHTIKMGLSSDPLFQKR---VIAFCCAHESGKMIYARQVFD 65

Query: 173 DMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSF 232
            +       W T+I GY+   +   G+ ++  ML   ++ + ++F   ++       + +
Sbjct: 66  AIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQY 125

Query: 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEK 292
           GK++    +KHGF SNL V  + + M+     +  A + FD     +++TWN +++GY +
Sbjct: 126 GKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNR 185

Query: 293 SGSSECLNM-FSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVH----AGIVRRGLDG 347
               +   M F +M+    SPN  T   +++AC+ L  L  G+ ++     GIV R    
Sbjct: 186 VKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVER---- 241

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK---------- 397
           NL L N LIDM+A CG + ++Q +F  M +RD+++WTS++ G+   G             
Sbjct: 242 NLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIP 301

Query: 398 ---------------------EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
                                EA+ LF EM  S V+PD    +++LTAC+H G ++ G +
Sbjct: 302 ERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELG-E 360

Query: 437 YFKSMNDYNVNPNKEIYG-CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           + K+  D N   N    G  ++D+  + G V +A ++ K M  K D+  W  ++
Sbjct: 361 WVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHK-DKFTWTAMI 413


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 192/560 (34%), Positives = 316/560 (56%), Gaps = 10/560 (1%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           GP +L  +LI  Y   G I+ AR +F+   E D VSW  +IAGY     +++   + V+M
Sbjct: 74  GPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKM 133

Query: 104 VRNEVNPNAFTLSSVLKACKG--MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
           +R+ +N N++ L S LKAC      S+    ++HG A+K GL+  + V  +L+D YA   
Sbjct: 134 LRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIG 193

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGN-----GYGGLGVFKEMLLEGVEMNPYS 216
             +++A  +F  M   N V +  +I G+              + +F EM   G++ + ++
Sbjct: 194 -DLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFT 252

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
           FS  ++AC++      GK IHA + K+   S+  + N+++++Y     + D  + F    
Sbjct: 253 FSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTP 312

Query: 277 EKDLITWNTIIAGYEKSGSSEC-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ 335
           + D+++W ++I G+ ++G  E  L +F ++      P+ FT + +++ACA LAA+  G+Q
Sbjct: 313 KLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQ 372

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
           +HA  ++ G+     + N+ I MYAKCG+I  +   F E  + D+V+W+ M+     HG 
Sbjct: 373 IHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGC 432

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYG 454
            KEA++LF+ M  SG+ P+ I F+ VL ACSH GLV+EGL+YF+ M  D+ + PN +   
Sbjct: 433 AKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSA 492

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514
           C+VDLLGRAGR+ EA   I    F+ D  +W  LL AC+ H+  + GK  A RV++L+P 
Sbjct: 493 CIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIELEPE 552

Query: 515 MMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSH 574
              +Y++L NIY   G      + R +M+  G KKE G+SWIEV + V  F+A D+   +
Sbjct: 553 AAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPN 612

Query: 575 TQYVYGVLEMLIRHMNETAY 594
           +Q +Y  LE ++  + +  Y
Sbjct: 613 SQVIYVQLEEMLEEIKKLDY 632



 Score =  231 bits (590), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 131/436 (30%), Positives = 228/436 (52%), Gaps = 18/436 (4%)

Query: 72  MPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNA 131
           MP+R+VVSW  +I+GYT    +++   +F E   +++  + FT S+ L  C     L   
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 132 ALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAH 191
            L+H +    GL G + + NSL+D+Y  C   +D ARLVF      + VSW +LI GY  
Sbjct: 61  RLIHALITVSGLGGPVLLTNSLIDMYCKCG-RIDWARLVFESADELDSVSWNSLIAGYVR 119

Query: 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS--TGWVSFGKLIHAAVIKHGFGSNL 249
            G+    L +  +ML  G+ +N Y+   A++AC S  +  +  GK++H   +K G   ++
Sbjct: 120 IGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDV 179

Query: 250 PVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEK------SGSSECLNMFS 303
            V  ++LD Y +   L DA + F  M + +++ +N +IAG+ +        ++E + +F 
Sbjct: 180 VVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFF 239

Query: 304 KMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG 363
           +M+S    P+ FTF+SI+ AC+T+ A  CG+Q+HA I +  L  +  + NAL+++Y+  G
Sbjct: 240 EMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSG 299

Query: 364 NISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLT 423
           +I D  K F      D+V+WTS+++G+  +G  +  + LF E++ SG +PD      +L+
Sbjct: 300 SIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLS 359

Query: 424 ACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK---- 479
           AC++   V  G +         +     I    + +  + G +  A     +M FK    
Sbjct: 360 ACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSA-----NMTFKETKN 414

Query: 480 PDESVWGPLLGACKEH 495
           PD   W  ++ +  +H
Sbjct: 415 PDIVSWSVMISSNAQH 430


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 189/555 (34%), Positives = 306/555 (55%), Gaps = 41/555 (7%)

Query: 92  CHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVEN 151
           C  Q  +     VR E       L SVL  C  +  +     VH    ++GLE   +V  
Sbjct: 19  CQLQTQSFIPFSVRQEQKILESRLVSVLHGCTHINQVKQ---VHAHIFRKGLEQCCFVLA 75

Query: 152 SLMDVYATCCISMDN-ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGV 210
            L+       + MD   RLVF  +++ N   WT LI GYA  G     + ++  M  +G+
Sbjct: 76  KLLRTLTKLDVPMDPYPRLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGI 135

Query: 211 EMNPYSFSIAVRACASTGWVSFGKLIHA-AVIKHGFGSNLPVMNSILDMYCRFDCLSDAN 269
               ++F+  ++AC++   V+ G+ +H   ++  GFGS+L V N+++DMY +  CL   +
Sbjct: 136 GPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGH 195

Query: 270 QYFDEMTEKDLITWNTIIAGYEKSGS--------------------------------SE 297
           + FDEM ++D+I+W ++I  Y K G+                                 E
Sbjct: 196 RVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPRE 255

Query: 298 CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL--DGNLALANAL 355
            L +F +M++     +  T   +I+ACA L A      V     + G     N+ + +AL
Sbjct: 256 ALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSAL 315

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           IDMYAKCG++ D+ K+F  M +R++ +++SM++G+  HG    A+ELFDEM+K+ ++P+R
Sbjct: 316 IDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNR 375

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
           + F+ VLTACSHAG+V++G + F  M + + V P+++ Y C+VDLLGRAGR++EA  L+K
Sbjct: 376 VTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVK 435

Query: 475 SMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEE 534
            MP  P   VWG LLGAC+ H  P++ ++AA  + +L+PN +G YI+LSNIYA+ G+W++
Sbjct: 436 MMPMNPHGGVWGALLGACRIHGNPDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDD 495

Query: 535 FAKFRKIMRGMGSKKEVGMSWIEVRDKVCG-FIANDKMGSHTQYVYGVLEMLIRHMNETA 593
            +K RK+MR  G KK  G SW+E +  +   F A D     ++ +   LE L+  +    
Sbjct: 496 VSKVRKLMRAKGLKKNPGCSWVEGKKGIIHEFFAGDMSHPKSREIKQALEDLLDRLKYLG 555

Query: 594 YEPDIDCLIHDLEGE 608
           Y+P++  + +D+  E
Sbjct: 556 YQPNLSSVAYDISDE 570



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 110/449 (24%), Positives = 198/449 (44%), Gaps = 70/449 (15%)

Query: 66  RTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGM 125
           R +F ++   +   WT +I GY       ++  ++  M R  + P +FT +++LKAC   
Sbjct: 93  RLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAA 152

Query: 126 KSLSNAALVHGMAIKEGLEGS-IYVENSLMDVYATC-CI--------------------- 162
             ++    VH   I  G  GS +YV N+L+D+Y  C C+                     
Sbjct: 153 LDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSL 212

Query: 163 --------SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP 214
                   +M+ A  +F+ +  K+ V+WT ++TGYA +      L VF+ M   GV+ + 
Sbjct: 213 IVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDE 272

Query: 215 YSFSIAVRACASTGWVSFGKLIHAAVIKHGFG--SNLPVMNSILDMYCRFDCLSDANQYF 272
            +    + ACA  G   +   +     + GFG  SN+ V ++++DMY +   + DA + F
Sbjct: 273 VTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVF 332

Query: 273 DEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALS 331
           + M E+++ +++++I G+   G +   + +F +M      PN  TF  ++ AC+      
Sbjct: 333 ERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACS------ 386

Query: 332 CGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG 391
                HAG+V +G          L  M  +C  ++ S+  ++ M D             G
Sbjct: 387 -----HAGMVEQG--------QQLFAMMEECHGVAPSEDHYACMVDL-----------LG 422

Query: 392 AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK- 450
             G  +EA+ L   M    + P   V+ A+L AC   G  D  +    + + + + PN  
Sbjct: 423 RAGRLEEALNLVKMM---PMNPHGGVWGALLGACRIHGNPD--MAQIAASHLFELEPNGI 477

Query: 451 EIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
             Y  + ++   AGR  +  ++ K M  K
Sbjct: 478 GNYILLSNIYASAGRWDDVSKVRKLMRAK 506



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 114/222 (51%), Gaps = 4/222 (1%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T+LI +Y   G +E A  LFD +P +D+V+WT M+ GY       +A  VF  M    V 
Sbjct: 210 TSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVK 269

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGL--EGSIYVENSLMDVYATCCISMDNA 167
            +  TL  V+ AC  + +   A  V  +A + G     ++ V ++L+D+YA C  S+++A
Sbjct: 270 TDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCG-SVEDA 328

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             VF  M+ +N  S++++I G+A  G     + +F EML   ++ N  +F   + AC+  
Sbjct: 329 YKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHA 388

Query: 228 GWVSFGKLIHAAVIK-HGFGSNLPVMNSILDMYCRFDCLSDA 268
           G V  G+ + A + + HG   +      ++D+  R   L +A
Sbjct: 389 GMVEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEA 430



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 7/107 (6%)

Query: 42  PKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFV 101
           P    ++ + LI  Y   G +E+A  +F+ M ER+V S++ MI G+        A  +F 
Sbjct: 305 PTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFD 364

Query: 102 EMVRNEVNPNAFTLSSVLKAC-------KGMKSLSNAALVHGMAIKE 141
           EM++ E+ PN  T   VL AC       +G +  +     HG+A  E
Sbjct: 365 EMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSE 411


>gi|297828580|ref|XP_002882172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297328012|gb|EFH58431.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 638

 Score =  352 bits (902), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 182/549 (33%), Positives = 316/549 (57%), Gaps = 6/549 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR-N 106
           + ++LI  Y   G + EA  +F+E+ + D+V+W+ M++G+       QA   F  M   +
Sbjct: 79  VGSSLIYMYVKCGRMTEALRMFNELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMATAS 138

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           +V P+  TL +++ AC  + +      VHG  ++ G    + + NSL++ YA    +   
Sbjct: 139 DVTPDRVTLITLVSACTKLSNSRLGRCVHGFVMRRGFSNDLSLVNSLLNCYAKS-RAFKE 197

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  +F  M  K+ +SW+T+I  Y  +G     L VF EM+ +G E N  +    ++ACA+
Sbjct: 198 AVNLFKMMAEKDVISWSTVIACYVQNGAAAEALRVFNEMIDDGTEPNVATVLCVLQACAA 257

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  G+  H   I+ G  + + V  +++DMY +     +A   F  + +KD+++W  +
Sbjct: 258 ANDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPKKDVVSWVAL 317

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFS-PNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           I+G+  +G +   +  FS M  E  + P+      ++ +C+ L  L   +  H+ +++ G
Sbjct: 318 ISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMLKVLGSCSELGFLKQAECFHSYVIKYG 377

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
            D N  +  +L+++Y++CG++ ++ K+F+E++ +D V WTS++ GYG HG G +A+E F+
Sbjct: 378 FDSNPFIGASLVELYSRCGSLGNASKVFNEIALKDTVVWTSLITGYGIHGKGTKALETFN 437

Query: 405 EMVKSG-VRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGR 462
            MV+S  V+P+ + F+++L+ACSHAGL+ EGL+ F+ M NDY + PN E Y  +VDLLGR
Sbjct: 438 HMVRSSEVKPNEVTFLSILSACSHAGLIHEGLRIFELMVNDYRLAPNLEHYAVLVDLLGR 497

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
            G +  A E+ K MPF P   + G LLGAC+ H+   + +  A ++ +L+ N  G Y+++
Sbjct: 498 VGELDTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAETVAKQLFELESNHAGYYMLM 557

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           SN+Y  +G+WE   K R  ++  G KK +  S IE+R KV  F+A+D +    + VYG+L
Sbjct: 558 SNMYGVKGEWENVEKLRNSVKQRGIKKGLAESLIEIRRKVHKFVADDDLHPEKEPVYGLL 617

Query: 583 EMLIRHMNE 591
           + L  HM E
Sbjct: 618 KELDLHMKE 626



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 130/461 (28%), Positives = 237/461 (51%), Gaps = 13/461 (2%)

Query: 72  MPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNA 131
           M +R +  W  ++   +      Q    F +M R+E  P+ FTL   LKAC  ++ +   
Sbjct: 1   MTKRTLYQWNTLLKSLSRDKHWEQVMCHFSQMFRDEEKPDNFTLPVALKACGELREVKYG 60

Query: 132 ALVHGMAIKEGLEGS-IYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYA 190
            ++HG   K    GS +YV +SL+ +Y  C   M  A  +FN+++  + V+W+++++G+ 
Sbjct: 61  EMIHGFLKKNVTLGSDLYVGSSLIYMYVKCG-RMTEALRMFNELEKPDIVTWSSMVSGFE 119

Query: 191 HSGNGYGGLGVFKEMLLEG-VEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNL 249
            +G+ Y  +  F+ M     V  +  +    V AC        G+ +H  V++ GF ++L
Sbjct: 120 KNGSPYQAVEFFRRMATASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVMRRGFSNDL 179

Query: 250 PVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSE 308
            ++NS+L+ Y +     +A   F  M EKD+I+W+T+IA Y ++G ++E L +F++M  +
Sbjct: 180 SLVNSLLNCYAKSRAFKEAVNLFKMMAEKDVISWSTVIACYVQNGAAAEALRVFNEMIDD 239

Query: 309 RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDS 368
              PN  T   ++ ACA    L  G++ H   +R+GL+  + ++ AL+DMY KC +  ++
Sbjct: 240 GTEPNVATVLCVLQACAAANDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEA 299

Query: 369 QKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM-VKSGVRPDRIVFMAVLTACSH 427
             +FS +  +D+V+W +++ G+  +G    +IE F  M +++  RPD I+ + VL +CS 
Sbjct: 300 YAVFSRIPKKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMLKVLGSCSE 359

Query: 428 AGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGP 487
            G + +   +   +  Y  + N  I   +V+L  R G +  A ++   +  K D  VW  
Sbjct: 360 LGFLKQAECFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNEIALK-DTVVWTS 418

Query: 488 LLGACKEH-----RLPNLGKLAALRVLDLKPNMMGTYIILS 523
           L+     H      L     +  +R  ++KPN +    ILS
Sbjct: 419 LITGYGIHGKGTKALETFNHM--VRSSEVKPNEVTFLSILS 457


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  352 bits (902), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 198/573 (34%), Positives = 307/573 (53%), Gaps = 54/573 (9%)

Query: 40  LIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTV 99
           L P+  ++    ++ +Y   G +EEAR LF+   E DV+SW  +++GY  +   ++A  +
Sbjct: 156 LAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEAREL 215

Query: 100 FVEMVRNEVNPNAFTLSSVLKACKGM--KSLSNAALVHGMAIKEGLEGSIYVENSLMDVY 157
           F  M   +V      +S   +    +  + L +AA V            ++   +++  Y
Sbjct: 216 FDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR----------DVFTWTAVVSGY 265

Query: 158 ATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSF 217
           A   + ++ AR VF+ M  +N VSW  ++  Y           + + M+ E  E+     
Sbjct: 266 AQNGM-LEEARRVFDAMPERNAVSWNAMVAAY-----------IQRRMMDEAKEL----- 308

Query: 218 SIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE 277
              +  C                       N+   N++L  Y +   L +A   FD M +
Sbjct: 309 -FNMMPC----------------------RNVASWNTMLTGYAQAGMLEEAKAVFDTMPQ 345

Query: 278 KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQV 336
           KD ++W  ++A Y + G S E L +F +M       N   F  +++ CA +AAL CG Q+
Sbjct: 346 KDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQL 405

Query: 337 HAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHG 396
           H  ++R G      + NAL+ MY KCGN+ D++  F EM +RD+V+W +M+ GY  HG G
Sbjct: 406 HGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFG 465

Query: 397 KEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGC 455
           KEA+E+FD M  +  +PD I  + VL ACSH+GLV++G+ YF SM+ D+ V    E Y C
Sbjct: 466 KEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTC 525

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM 515
           ++DLLGRAGR+ EA++L+K MPF+PD ++WG LLGA + HR P LG+ AA ++ +L+P  
Sbjct: 526 MIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPEN 585

Query: 516 MGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHT 575
            G Y++LSNIYA+ GKW +  K R +M   G KK  G SWIEV++KV  F A D +    
Sbjct: 586 AGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEK 645

Query: 576 QYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           + +Y  LE L   M +  Y    D ++HD+E E
Sbjct: 646 EKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEE 678



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 108/467 (23%), Positives = 188/467 (40%), Gaps = 112/467 (23%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIA--------------- 85
           +P   S+    +I S+ + GL+  AR  FD  PE+D VSW  M+A               
Sbjct: 126 MPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF 185

Query: 86  ----------------GYTSFNCHNQAWTVFVEMVRNEV------------NPNAFTLSS 117
                           GY  +   ++A  +F  M   +V              +      
Sbjct: 186 NSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARR 245

Query: 118 VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM----------DNA 167
           +  A       +  A+V G A    LE +  V +++ +  A    +M          D A
Sbjct: 246 LFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEA 305

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSG--------------------------NGYGG--- 198
           + +FN M  +N  SW T++TGYA +G                             GG   
Sbjct: 306 KELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSE 365

Query: 199 --LGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSIL 256
             L +F EM   G  +N  +F+  +  CA    +  G  +H  +I+ G+G    V N++L
Sbjct: 366 ETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALL 425

Query: 257 DMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCF 315
            MY +   + DA   F+EM E+D+++WNT+IAGY + G   E L +F  M++    P+  
Sbjct: 426 AMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDI 485

Query: 316 TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN------------ALIDMYAKCG 363
           T   ++AAC+           H+G+V +G+    ++ +             +ID+  + G
Sbjct: 486 TLVGVLAACS-----------HSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAG 534

Query: 364 NISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGH---GKEAIELFDEM 406
            ++++  +  +M  + D   W +++     H +   G+ A E   E+
Sbjct: 535 RLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFEL 581



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 121/277 (43%), Gaps = 44/277 (15%)

Query: 253 NSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSP 312
           N++L        L+DA   FDEM  +D +T+N +I+ +   G       +  +  E+   
Sbjct: 104 NTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEK--- 160

Query: 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIF 372
           +  ++  ++AA      +   +    G+     + ++   NAL+  Y + G +S+++++F
Sbjct: 161 DAVSWNGMLAAYVRNGRVEEAR----GLFNSRTEWDVISWNALMSGYVQWGKMSEARELF 216

Query: 373 SEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD 432
             M  RD+V+W  M+ GY   G   EA  LFD    + VR D   + AV++  +  G+++
Sbjct: 217 DRMPGRDVVSWNIMVSGYARRGDMVEARRLFD---AAPVR-DVFTWTAVVSGYAQNGMLE 272

Query: 433 EGLKYFKSMND-------------------------YNVNPNKEIYGCVVDLLG--RAGR 465
           E  + F +M +                         +N+ P + +      L G  +AG 
Sbjct: 273 EARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGM 332

Query: 466 VKEAYELIKSMPFKPDESVWGPLL-----GACKEHRL 497
           ++EA  +  +MP K D   W  +L     G C E  L
Sbjct: 333 LEEAKAVFDTMPQK-DAVSWAAMLAAYSQGGCSEETL 368



 Score = 43.9 bits (102), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 9/147 (6%)

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           L+  +  +N  I  + + G ++D++++F+ M  R   T+ +M+ GY A+G    A  LF 
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLF- 92

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
              ++  RPD   +  +L    HA  V   L   + + D     +   Y  ++      G
Sbjct: 93  ---RAIPRPDNYSYNTLL----HALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHG 145

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGA 491
            V  A       P K D   W  +L A
Sbjct: 146 LVSLARHYFDLAPEK-DAVSWNGMLAA 171


>gi|449455116|ref|XP_004145299.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 722

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 197/564 (34%), Positives = 322/564 (57%), Gaps = 10/564 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQA-WTVFVEMVR 105
           ++AT L + Y +    E A  LFD+   +D+  W   +      N + +  + VF  M+ 
Sbjct: 161 VVATALAEMYEECIEFENAHQLFDKRSVKDL-GWPSSLTTEGPQNDNGEGIFRVFGRMIA 219

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
            ++ P++FT  ++L+   G+ S+  A +VH +AI   L G + V  +++ +Y+    S+ 
Sbjct: 220 EQLVPDSFTFFNLLRFIAGLNSIQLAKIVHCIAIVSKLSGDLLVNTAVLSLYSKL-RSLV 278

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +AR +F+ M  K+ V W  +I  YA  G     L +FK M   G+  + ++    + + A
Sbjct: 279 DARKLFDKMPEKDRVVWNIMIAAYAREGKPTECLELFKSMARSGIRSDLFTALPVISSIA 338

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               V +GK  HA ++++G  S + V NS++DMYC    L  A + F+ MT+K +I+W+ 
Sbjct: 339 QLKCVDWGKQTHAHILRNGSDSQVSVHNSLIDMYCECKILDSACKIFNWMTDKSVISWSA 398

Query: 286 IIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I GY K+G S   L++FSKMKS+    +     +I+ A   + AL   + +H   ++ G
Sbjct: 399 MIKGYVKNGQSLTALSLFSKMKSDGIQADFVIMINILPAFVHIGALENVKYLHGYSMKLG 458

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSE--MSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
           L    +L  AL+  YAKCG+I  +Q++F E  + D+DL+ W SM+  +  HG   +  +L
Sbjct: 459 LTSLPSLNTALLITYAKCGSIEMAQRLFEEEKIDDKDLIMWNSMISAHANHGDWSQCFKL 518

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLG 461
           ++ M  S  +PD++ F+ +LTAC ++GLV++G ++FK M + Y   P++E Y C+V+LLG
Sbjct: 519 YNRMKCSNSKPDQVTFLGLLTACVNSGLVEKGKEFFKEMTESYGCQPSQEHYACMVNLLG 578

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           RAG + EA EL+K+MP KPD  VWGPLL ACK H    L + AA ++++++P   G YI+
Sbjct: 579 RAGLISEAGELVKNMPIKPDARVWGPLLSACKMHPGSKLAEFAAEKLINMEPRNAGNYIL 638

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVY-- 579
           LSNIYAA GKW+  AK R  +R  G KK  G SW+E+   V  F   D+       +Y  
Sbjct: 639 LSNIYAAAGKWDGVAKMRSFLRNKGLKKIPGCSWLEINGHVTEFRVADQTHPRAGDIYTI 698

Query: 580 -GVLEMLIRHMNETAYEPDIDCLI 602
            G LE+ I+ + E + +  ++ L+
Sbjct: 699 LGNLELEIKEVREKSPDTLVNPLL 722



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 113/393 (28%), Positives = 205/393 (52%), Gaps = 5/393 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L++ LI  Y + GL+  +  +F  + + ++  +  ++   T +    +   V+ +MV   
Sbjct: 61  LSSKLIDCYANLGLLNHSLQVFCSVIDPNLTLFNAILRNLTRYGESERTLLVYQQMVAKS 120

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           ++P+  T   VL++C    ++     +HG  +K G +    V  +L ++Y   CI  +NA
Sbjct: 121 MHPDEETYPFVLRSCSSFSNVGFGRTIHGYLVKLGFDLFDVVATALAEMYEE-CIEFENA 179

Query: 168 RLVFNDMKWKNDVSW-TTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
             +F D +   D+ W ++L T    + NG G   VF  M+ E +  + ++F   +R  A 
Sbjct: 180 HQLF-DKRSVKDLGWPSSLTTEGPQNDNGEGIFRVFGRMIAEQLVPDSFTFFNLLRFIAG 238

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +   K++H   I      +L V  ++L +Y +   L DA + FD+M EKD + WN +
Sbjct: 239 LNSIQLAKIVHCIAIVSKLSGDLLVNTAVLSLYSKLRSLVDARKLFDKMPEKDRVVWNIM 298

Query: 287 IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           IA Y + G  +ECL +F  M       + FT   +I++ A L  +  G+Q HA I+R G 
Sbjct: 299 IAAYAREGKPTECLELFKSMARSGIRSDLFTALPVISSIAQLKCVDWGKQTHAHILRNGS 358

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           D  +++ N+LIDMY +C  +  + KIF+ M+D+ +++W++M+ GY  +G    A+ LF +
Sbjct: 359 DSQVSVHNSLIDMYCECKILDSACKIFNWMTDKSVISWSAMIKGYVKNGQSLTALSLFSK 418

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYF 438
           M   G++ D ++ + +L A  H G + E +KY 
Sbjct: 419 MKSDGIQADFVIMINILPAFVHIGAL-ENVKYL 450



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 121/264 (45%), Gaps = 16/264 (6%)

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS 295
           IHA  I HGF  N  + + ++D Y     L+ + Q F  + + +L  +N I+    + G 
Sbjct: 46  IHARFILHGFHQNPTLSSKLIDCYANLGLLNHSLQVFCSVIDPNLTLFNAILRNLTRYGE 105

Query: 296 SE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
           SE  L ++ +M ++   P+  T+  ++ +C++ + +  G+ +H  +V+ G D    +A A
Sbjct: 106 SERTLLVYQQMVAKSMHPDEETYPFVLRSCSSFSNVGFGRTIHGYLVKLGFDLFDVVATA 165

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI-ELFDEMVKSGVRP 413
           L +MY +C    ++ ++F + S +DL  W S +   G      E I  +F  M+   + P
Sbjct: 166 LAEMYEECIEFENAHQLFDKRSVKDL-GWPSSLTTEGPQNDNGEGIFRVFGRMIAEQLVP 224

Query: 414 DRIV------FMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
           D         F+A L +   A +V       K   D  VN        V+ L  +   + 
Sbjct: 225 DSFTFFNLLRFIAGLNSIQLAKIVHCIAIVSKLSGDLLVNT------AVLSLYSKLRSLV 278

Query: 468 EAYELIKSMPFKPDESVWGPLLGA 491
           +A +L   MP K D  VW  ++ A
Sbjct: 279 DARKLFDKMPEK-DRVVWNIMIAA 301



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 57/111 (51%), Gaps = 3/111 (2%)

Query: 316 TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEM 375
           T + + + C ++  L   QQ+HA  +  G   N  L++ LID YA  G ++ S ++F  +
Sbjct: 29  TLSLLFSRCNSIQHL---QQIHARFILHGFHQNPTLSSKLIDCYANLGLLNHSLQVFCSV 85

Query: 376 SDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS 426
            D +L  + +++     +G  +  + ++ +MV   + PD   +  VL +CS
Sbjct: 86  IDPNLTLFNAILRNLTRYGESERTLLVYQQMVAKSMHPDEETYPFVLRSCS 136


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 187/569 (32%), Positives = 320/569 (56%), Gaps = 11/569 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           IL T LI  Y     +E AR  FDEM ++ +V+W  +IAGY+    H  A  ++ +MV  
Sbjct: 95  ILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSK 154

Query: 107 E---VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
               + P+A T SS L AC  +  +S    +    +  G      V+N+L+++Y+ C  S
Sbjct: 155 SPEGMKPDAITFSSALYACTVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCG-S 213

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +++AR VF+ +K ++ ++W T+I+GYA  G     L +F+ M     + N  +F   + A
Sbjct: 214 LESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTA 273

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR-FDCLSDANQYFDEMTEKDLIT 282
           C +   +  G+ IH  V + G+ S+L + N +L+MY +    L +A Q F+ M  +D+IT
Sbjct: 274 CTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVIT 333

Query: 283 WNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           WN +I  Y + G + + L++F +M+ E  +PN  T +++++ACA L A   G+ VHA I 
Sbjct: 334 WNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIA 393

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
                 ++ L N+L++MY +CG++ D+  +F+ + D+ LV+W++++  Y  HGH +  +E
Sbjct: 394 SGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLE 453

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLL 460
            F E+++ G+  D +  ++ L+ACSH G++ EG++ F SM  D+ + P+   + C+VDLL
Sbjct: 454 HFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMVDLL 513

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP-NMMGTY 519
            RAGR++ A  LI  MPF PD   W  LL  CK H         A ++ +L+  +   T 
Sbjct: 514 SRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTV 573

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVY 579
            +LSN+YA  G+W++    RK      ++K  G S+IE+ D V  F+A DK     + + 
Sbjct: 574 TLLSNVYAEAGRWDD---VRKTRNRRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIA 630

Query: 580 GVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
             ++ L + M +  Y PD+  ++H+++ E
Sbjct: 631 AEIKRLSKQMKDAGYVPDMRMVLHNVKEE 659



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 109/364 (29%), Positives = 180/364 (49%), Gaps = 3/364 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           SI+   LI  Y   G +E AR +FD +  RDV++W  MI+GY       QA  +F  M  
Sbjct: 198 SIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGP 257

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           N+  PN  T   +L AC  ++ L     +H    ++G E  + + N L+++Y  C  S++
Sbjct: 258 NDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLE 317

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            AR VF  M+ ++ ++W  LI  Y   G     L +FK+M LE V  N  + S  + ACA
Sbjct: 318 EARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACA 377

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
             G    GK +HA +      +++ + NS+++MY R   L D    F  + +K L++W+T
Sbjct: 378 VLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWST 437

Query: 286 IIAGYEKSGSSEC-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV-RR 343
           +IA Y + G S   L  F ++  E  + +  T  S ++AC+    L  G Q    +V   
Sbjct: 438 LIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDH 497

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSD-RDLVTWTSMMIGYGAHGHGKEAIEL 402
           GL  +      ++D+ ++ G +  ++ +  +M    D V WTS++ G   H   K A  +
Sbjct: 498 GLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARV 557

Query: 403 FDEM 406
            D++
Sbjct: 558 ADKL 561



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 106/376 (28%), Positives = 207/376 (55%), Gaps = 13/376 (3%)

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
           C S+ +A  VF+ ++  N VSWT ++  +A +G+    LG ++ M+LEG+  +   F +A
Sbjct: 5   CGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVA 64

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGS-NLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
           +  C+S+  +  G+L+HA +++      ++ +  +++ MY R   L  A + FDEM +K 
Sbjct: 65  IGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKT 124

Query: 280 LITWNTIIAGYEKSGSSE-CLNMFSKMKS---ERFSPNCFTFTSIIAACATLAALSCGQQ 335
           L+TWN +IAGY ++G     L ++  M S   E   P+  TF+S + AC  +  +S G++
Sbjct: 125 LVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGRE 184

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
           + A  V  G   +  + NALI+MY+KCG++  ++K+F  + +RD++ W +M+ GY   G 
Sbjct: 185 IEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGA 244

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455
             +A+ELF  M  +  +P+ + F+ +LTAC++   +++G    + + +     +  I   
Sbjct: 245 ATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNV 304

Query: 456 VVDLLGR-AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLK 512
           ++++  + +  ++EA ++ + M  + D   W  L+ A  ++      L     +++ ++ 
Sbjct: 305 LLNMYTKCSSSLEEARQVFERMRTR-DVITWNILIVAYVQYGQAKDALDIFKQMQLENVA 363

Query: 513 PNMMGTYIILSNIYAA 528
           PN     I LSN+ +A
Sbjct: 364 PN----EITLSNVLSA 375



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 100/182 (54%), Gaps = 5/182 (2%)

Query: 258 MYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFT 316
           MY +   ++DA   F  +   + ++W  I+A + ++G   E L  + +M  E   P+   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 317 FTSIIAACATLAALSCGQQVHAGIVR-RGLDGNLALANALIDMYAKCGNISDSQKIFSEM 375
           F   I  C++   L  GQ +HA I+  R L+ ++ L  ALI MYA+C ++  ++K F EM
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 376 SDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK---SGVRPDRIVFMAVLTACSHAGLVD 432
             + LVTW +++ GY  +G  + A++++ +MV     G++PD I F + L AC+  G + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 433 EG 434
           +G
Sbjct: 181 QG 182



 Score = 43.5 bits (101), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 23/158 (14%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           K   +L  +L+  Y   G +++   +F  + ++ +VSW+ +IA Y            F E
Sbjct: 398 KADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWE 457

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEG--SIYVENSLMDVYA-- 158
           +++  +  +  T+ S L AC            HG  +KEG++   S+  ++ L   Y   
Sbjct: 458 LLQEGLAADDVTMVSTLSACS-----------HGGMLKEGVQTFLSMVGDHGLAPDYRHF 506

Query: 159 TCCIS-------MDNARLVFNDMKWKND-VSWTTLITG 188
            C +        ++ A  + +DM +  D V+WT+L++G
Sbjct: 507 LCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSG 544


>gi|297736926|emb|CBI26127.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 195/572 (34%), Positives = 304/572 (53%), Gaps = 47/572 (8%)

Query: 60  GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119
           G I  AR LFDEMP +D V+W  M+A Y+    H QA  +F  M      P+ FT ++ L
Sbjct: 19  GRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMRIANSRPDRFTFTATL 78

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179
            AC G+  L     +H   +  G + S+ V NSL+D+Y  C +S  +AR VF +M   N+
Sbjct: 79  SACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKC-LSATSARRVFEEMSIMNE 137

Query: 180 VSWTTLITGYAHSG------------------------NGYGG-------LGVFKEMLLE 208
           VSW +L+  Y  SG                        +GYG        LG+FK+M  +
Sbjct: 138 VSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCGDVELCLGLFKKMRED 197

Query: 209 GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSI-----------LD 257
            ++ + ++FS  V A       S+G ++H  +IK G+   + V  SI           +D
Sbjct: 198 SLQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWDDVMKVFESIGILTQVSWNAMID 257

Query: 258 MYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFT 316
            + +     +A   F    EK++++W ++I GY ++G  E  L+ F KM      P+ FT
Sbjct: 258 AHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGEQALSFFVKMMENHIQPDDFT 317

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           F +++ AC++LA L  G+ +H  I+  G    + + N L++MYAKCG+I  S   F E+ 
Sbjct: 318 FGAVLHACSSLATLGHGKMIHGSIIHYGFHAYVDVGNGLVNMYAKCGDIQGSNTAFKEIL 377

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
            +DLV+W +M+ G G HGH  +A+EL++EMV SG++PD++ F+ +L  CSH+GL+++G  
Sbjct: 378 GKDLVSWNAMLFGLGMHGHATQALELYEEMVASGMKPDKVTFIGLLMTCSHSGLIEKGQA 437

Query: 437 YFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK--SMPFKPDESVWGPLLGACK 493
            F+SM + Y ++   E   C+VDLLGR G + +A EL+   S   + + S+   LLGAC 
Sbjct: 438 LFESMVSVYGLSQETEHVVCMVDLLGRGGYLAQARELVDEYSRTGRAETSLPEALLGACF 497

Query: 494 EHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGM 553
            H    +G      +   +P    +Y++LSN+Y   G+W+E    RK M   G KK  G 
Sbjct: 498 AHSEVRMGANLGEYLKVFEPQKEMSYVLLSNLYCVSGQWKEAEMVRKTMTDHGVKKMPGC 557

Query: 554 SWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           SWIEVR+KV  F+A +    + + +  +L  L
Sbjct: 558 SWIEVRNKVTVFVAGNHSHPYMEELCKILNFL 589



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 117/438 (26%), Positives = 218/438 (49%), Gaps = 45/438 (10%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
           +L+ +Y   GL + AR +FD MP++  ++W +MI+GY           +F +M  + + P
Sbjct: 142 SLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCGDVELCLGLFKKMREDSLQP 201

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR-- 168
           + +T S+++ A   ++  S   ++HG  IK G +  + V  S+  +      +M +A   
Sbjct: 202 DQWTFSALVNALCELQEPSYGYMMHGFIIKSGWDDVMKVFESIGILTQVSWNAMIDAHMK 261

Query: 169 --------LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
                   LVF     KN VSWT++ITGYA +G+G   L  F +M+   ++ + ++F   
Sbjct: 262 IGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGEQALSFFVKMMENHIQPDDFTFGAV 321

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           + AC+S   +  GK+IH ++I +GF + + V N +++MY +   +  +N  F E+  KDL
Sbjct: 322 LHACSSLATLGHGKMIHGSIIHYGFHAYVDVGNGLVNMYAKCGDIQGSNTAFKEILGKDL 381

Query: 281 ITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           ++WN ++ G    G +++ L ++ +M +    P+  TF  ++  C+           H+G
Sbjct: 382 VSWNAMLFGLGMHGHATQALELYEEMVASGMKPDKVTFIGLLMTCS-----------HSG 430

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
           ++ +G     AL  +++ +Y     +S   +    M D         ++G G  G+  +A
Sbjct: 431 LIEKG----QALFESMVSVYG----LSQETEHVVCMVD---------LLGRG--GYLAQA 471

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEI-YGCVVD 458
            EL DE  ++G R +  +  A+L AC     V  G    + +  +   P KE+ Y  + +
Sbjct: 472 RELVDEYSRTG-RAETSLPEALLGACFAHSEVRMGANLGEYLKVF--EPQKEMSYVLLSN 528

Query: 459 LLGRAGRVKEAYELIKSM 476
           L   +G+ KEA  + K+M
Sbjct: 529 LYCVSGQWKEAEMVRKTM 546



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 1/132 (0%)

Query: 360 AKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFM 419
           AK G I+ ++++F EM  +D V W +M+  Y   G  ++A+ LF  M  +  RPDR  F 
Sbjct: 16  AKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMRIANSRPDRFTFT 75

Query: 420 AVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
           A L+AC+  G +  G+K    +       +  +   ++D+ G+      A  + + M   
Sbjct: 76  ATLSACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLSATSARRVFEEMSIM 135

Query: 480 PDESVWGPLLGA 491
            +E  W  LL A
Sbjct: 136 -NEVSWCSLLFA 146



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 36/75 (48%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +   L+  Y   G I+ + T F E+  +D+VSW  M+ G        QA  ++ EMV + 
Sbjct: 352 VGNGLVNMYAKCGDIQGSNTAFKEILGKDLVSWNAMLFGLGMHGHATQALELYEEMVASG 411

Query: 108 VNPNAFTLSSVLKAC 122
           + P+  T   +L  C
Sbjct: 412 MKPDKVTFIGLLMTC 426


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 196/578 (33%), Positives = 316/578 (54%), Gaps = 34/578 (5%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           A ++F+ + E +++ W  M  G+   +    A  ++V M+   + PN +T   +LK+C  
Sbjct: 41  AISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAK 100

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA-----------------------TCC 161
            K+      +HG  +K G +  +YV  SL+ +Y                        T  
Sbjct: 101 SKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTAL 160

Query: 162 IS-------MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP 214
           I+       + +A+ +F+++  K+ VSW  +I+GYA +GN    L +FKEM+   V  + 
Sbjct: 161 ITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDE 220

Query: 215 YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE 274
            +    V ACA +  +  G+ +H+ +  HGFGSNL ++N+++D+Y +   +  A   F+ 
Sbjct: 221 STMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEG 280

Query: 275 MTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG 333
           ++ KD+I+WNT+I GY       E L +F +M     SPN  T  SI+ ACA L A+  G
Sbjct: 281 LSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIG 340

Query: 334 QQVHAGIVRR--GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG 391
           + +H  I +R  G+    +   +LIDMYAKCG+I  +Q++F  + +R L +W +M+ G+ 
Sbjct: 341 RWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFA 400

Query: 392 AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNK 450
            HG    A ++F  M K+ + PD I F+ +L+ACSH+G++D G   F+SM  DY + P  
Sbjct: 401 MHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKL 460

Query: 451 EIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD 510
           E YGC++DLLG +G  KEA E+I +M  +PD  +W  LL ACK H    LG+  A  ++ 
Sbjct: 461 EHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIK 520

Query: 511 LKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDK 570
           ++P   G+Y++LSNIYA  G+W E AK R ++   G KK  G S IE+   V  FI  DK
Sbjct: 521 IEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDK 580

Query: 571 MGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
                + +YG+LE +   + E  + PD   ++ ++E E
Sbjct: 581 FHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEE 618



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 116/416 (27%), Positives = 202/416 (48%), Gaps = 20/416 (4%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T LI  Y  +G I  A+ +FDE+P +DVVSW  MI+GY     + +A  +F EM++  V 
Sbjct: 158 TALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVR 217

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P+  T+ SV+ AC    S+     VH      G   ++ + N+L+D+Y  C   ++ A  
Sbjct: 218 PDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCG-EVETACG 276

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           +F  + +K+ +SW TLI GY H       L +F+EML  G   N  +    + ACA  G 
Sbjct: 277 LFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGA 336

Query: 230 VSFGKLIHAAVIKH--GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
           +  G+ IH  + K   G  +      S++DMY +   +  A Q FD +  + L +WN +I
Sbjct: 337 IEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMI 396

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-GL 345
            G+   G ++   ++FS+M+     P+  TF  +++AC+    L  G+ +   +     +
Sbjct: 397 FGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKI 456

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEAIELFD 404
              L     +ID+    G   +++++ + M  + D V W S++     HG+    +EL +
Sbjct: 457 TPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGN----VELGE 512

Query: 405 EMVKSGVR-----PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455
              ++ ++     P   V ++ + A   AG  +E  K    +ND  +   K++ GC
Sbjct: 513 SYAQNLIKIEPKNPGSYVLLSNIYAT--AGRWNEVAKIRALLNDKGM---KKVPGC 563



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 149/294 (50%), Gaps = 38/294 (12%)

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYC----RFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           ++IHA +IK G  +    ++ +++ +C     FD L  A   F+ + E +L+ WNT+  G
Sbjct: 4   RMIHAQMIKTGLHNTNYALSKLIE-FCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRG 62

Query: 290 YEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           +  S      L ++  M S    PNC+TF  ++ +CA   A   GQQ+H  +++ G D +
Sbjct: 63  HALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLD 122

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDR------------------------------ 378
           L +  +LI MY + G + D++K+F + S R                              
Sbjct: 123 LYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPI 182

Query: 379 -DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY 437
            D+V+W +M+ GY   G+ KEA+ELF EM+K+ VRPD    ++V++AC+ +  ++ G + 
Sbjct: 183 KDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQV 242

Query: 438 FKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
              ++D+    N +I   ++DL  + G V+ A  L + + +K D   W  L+G 
Sbjct: 243 HSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYK-DVISWNTLIGG 295


>gi|297794367|ref|XP_002865068.1| hypothetical protein ARALYDRAFT_920083 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297310903|gb|EFH41327.1| hypothetical protein ARALYDRAFT_920083 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 659

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 196/542 (36%), Positives = 301/542 (55%), Gaps = 29/542 (5%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + TNL+  Y   G I++   +F EM  R+ V+WT +++G      H +  T F EM R+
Sbjct: 123 FVGTNLLNMYMRTGKIDKGCRIFTEMQFRNTVTWTAIVSGMVEAGRHKEGLTYFSEMSRS 182

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           +   + F  ++ LKAC  ++ +     +H   I  G + S+ V NSL+++Y  C    D 
Sbjct: 183 KGLSDDFAFATALKACARLRQVKYGKEIHTHVIVRGSDASLCVVNSLINMYTECGEMHDG 242

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
             L F  M  ++  SWTTLI  Y+  G     +  F ++             I  R   +
Sbjct: 243 VHL-FESMSERDVFSWTTLIDAYSQMGQEEKAVATFLKI------------EIFRR---T 286

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
           + W  F             G +L V NS++ MY     L  A+  F  M  +D+ITW+TI
Sbjct: 287 SQWTYFC-----------LGDSLSVSNSMMKMYSTCGKLDSASVLFQGMRRRDIITWSTI 335

Query: 287 IAGYEKSGSSECLNM-FSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I GY ++G  E + M FS M+     P      S+++   T+A L  G+QVHA  +  GL
Sbjct: 336 IGGYSQAGLGEEVFMCFSWMRQAGPKPTDPALASLLSVSGTMAVLEQGRQVHALALYLGL 395

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           + N  + +ALI+MY+KCG+I ++ KIF E    D+V+ T+M+ GY  HG+ KEAI+LF++
Sbjct: 396 EQNSTIRSALINMYSKCGSIEEASKIFEETDTDDIVSLTAMINGYAEHGNTKEAIDLFEK 455

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAG 464
            +K G+RPD + F++VLTACSH+G +D G +YF  M D YN+ P KE YGC+VDLL RAG
Sbjct: 456 SLKVGLRPDTVTFISVLTACSHSGQLDLGFRYFNLMQDEYNIRPVKEHYGCMVDLLCRAG 515

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           R+ +A ++I  MP+K D+ VW  LL ACK       G+ AA R+L+L P     ++ L+N
Sbjct: 516 RLSDAEKMINEMPWKKDDVVWTTLLNACKAKGDTERGRRAAERILELDPTSETAFVTLAN 575

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           IY++ GK EE A  RK M+  G  K  G S I++ D+   F++  +  S ++ +Y +L++
Sbjct: 576 IYSSTGKLEEAAHVRKAMKSKGVIKVPGWSSIKIMDRASTFVSGSQSHSQSEDIYSILDL 635

Query: 585 LI 586
           ++
Sbjct: 636 VV 637



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 111/412 (26%), Positives = 207/412 (50%), Gaps = 29/412 (7%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN-EVNPNAFTLSSVLKACK 123
           AR LFD+MP RD+VSWT +I GY +     +A  +F  ++ +  V+P+   LS  LKAC 
Sbjct: 39  ARHLFDQMPHRDIVSWTAIINGYVTAANSFEALNLFSALLFDPAVSPDTSVLSVALKACG 98

Query: 124 GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWT 183
              ++     +H  A K  L  S++V  +L+++Y      +D    +F +M+++N V+WT
Sbjct: 99  QSSNIGYGESLHAYAFKTSLLTSVFVGTNLLNMYMRTG-KIDKGCRIFTEMQFRNTVTWT 157

Query: 184 TLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH 243
            +++G   +G    GL  F EM       + ++F+ A++ACA    V +GK IH  VI  
Sbjct: 158 AIVSGMVEAGRHKEGLTYFSEMSRSKGLSDDFAFATALKACARLRQVKYGKEIHTHVIVR 217

Query: 244 GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMF 302
           G  ++L V+NS+++MY     + D    F+ M+E+D+ +W T+I  Y + G  E  +  F
Sbjct: 218 GSDASLCVVNSLINMYTECGEMHDGVHLFESMSERDVFSWTTLIDAYSQMGQEEKAVATF 277

Query: 303 SKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362
            K++  R +     F                           L  +L+++N+++ MY+ C
Sbjct: 278 LKIEIFRRTSQWTYFC--------------------------LGDSLSVSNSMMKMYSTC 311

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
           G +  +  +F  M  RD++TW++++ GY   G G+E    F  M ++G +P      ++L
Sbjct: 312 GKLDSASVLFQGMRRRDIITWSTIIGGYSQAGLGEEVFMCFSWMRQAGPKPTDPALASLL 371

Query: 423 TACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
           +      ++++G +         +  N  I   ++++  + G ++EA ++ +
Sbjct: 372 SVSGTMAVLEQGRQVHALALYLGLEQNSTIRSALINMYSKCGSIEEASKIFE 423



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 119/252 (47%), Gaps = 11/252 (4%)

Query: 246 GSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSK 304
            +++ ++   ++   R      A   FD+M  +D+++W  II GY  + +S E LN+FS 
Sbjct: 17  AASISLLEKPVEKIVRISNQGAARHLFDQMPHRDIVSWTAIINGYVTAANSFEALNLFSA 76

Query: 305 MKSE-RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG 363
           +  +   SP+    +  + AC   + +  G+ +HA   +  L  ++ +   L++MY + G
Sbjct: 77  LLFDPAVSPDTSVLSVALKACGQSSNIGYGESLHAYAFKTSLLTSVFVGTNLLNMYMRTG 136

Query: 364 NISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLT 423
            I    +IF+EM  R+ VTWT+++ G    G  KE +  F EM +S    D   F   L 
Sbjct: 137 KIDKGCRIFTEMQFRNTVTWTAIVSGMVEAGRHKEGLTYFSEMSRSKGLSDDFAFATALK 196

Query: 424 ACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLL----GRAGRVKEAYELIKSMPFK 479
           AC+    V    KY K ++ + +    +   CVV+ L       G + +   L +SM  +
Sbjct: 197 ACARLRQV----KYGKEIHTHVIVRGSDASLCVVNSLINMYTECGEMHDGVHLFESMS-E 251

Query: 480 PDESVWGPLLGA 491
            D   W  L+ A
Sbjct: 252 RDVFSWTTLIDA 263



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 90/210 (42%), Gaps = 21/210 (10%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S + + LI  Y   G IEEA  +F+E    D+VS T MI GY       +A  +F + ++
Sbjct: 399 STIRSALINMYSKCGSIEEASKIFEETDTDDIVSLTAMINGYAEHGNTKEAIDLFEKSLK 458

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS-- 163
             + P+  T  SVL AC     L        +   E      Y    + + Y  C +   
Sbjct: 459 VGLRPDTVTFISVLTACSHSGQLDLGFRYFNLMQDE------YNIRPVKEHYG-CMVDLL 511

Query: 164 -----MDNARLVFNDMKW-KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSF 217
                + +A  + N+M W K+DV WTTL+      G+   G    + +L    E++P S 
Sbjct: 512 CRAGRLSDAEKMINEMPWKKDDVVWTTLLNACKAKGDTERGRRAAERIL----ELDPTSE 567

Query: 218 SIAVRACASTGWVSFGKLIHAAVIKHGFGS 247
           +  V    +  + S GKL  AA ++    S
Sbjct: 568 TAFV--TLANIYSSTGKLEEAAHVRKAMKS 595


>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 603

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 190/543 (34%), Positives = 320/543 (58%), Gaps = 17/543 (3%)

Query: 42  PKGPSILATNLIKSYFDEGLIEEARTLF-DEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           P  PSI  T+LI  Y   G + EA  +F D   ER+V ++  +I+G+ S    ++ +  +
Sbjct: 44  PSPPSI--TSLINMYSKCGQMGEAILVFYDPCHERNVFAYNAIISGFVSNGLASKGFQFY 101

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
            +M    V P+ +T   V++ C  +  +     +HG  +K GLE  ++V ++L++ Y   
Sbjct: 102 KKMRLEGVMPDKYTFPCVVRTCCEVMEVKK---IHGCLLKMGLELDVFVGSALVNTYLKN 158

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
             SM++A+ VF ++  ++ V W  +I GYA  G     L VF+ M ++GV  + ++ +  
Sbjct: 159 G-SMEDAQKVFGELSIRDVVLWNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGI 217

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           +   AS G +  GK +H  V+K G+ S + V N+++DMY +   + DA   F+ + EKD+
Sbjct: 218 LSVFASRGDLDNGKTVHGIVMKMGYDSGVSVSNALIDMYGKCKHIGDALIIFEMINEKDI 277

Query: 281 ITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
            +WN+II+ +E+ G  +  L +F KM      P+  T T+++ AC+ LAAL  G+++H  
Sbjct: 278 FSWNSIISVHEQCGDHDGTLRLFDKMLGSGILPDLVTITTVLPACSHLAALMHGREIHGY 337

Query: 340 IVRRGLD--------GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG 391
           ++  GL          NL ++NA++DMYAKCG+++++ KIF  MS +D+ +W  M++GYG
Sbjct: 338 MIINGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNNALKIFDSMSKKDVASWNIMIMGYG 397

Query: 392 AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNK 450
            HG+  EA+ +F +M ++  +P+ +  + VL+AC+HAG V  G  +   M + + V P  
Sbjct: 398 MHGYALEALGMFSQMCEAEFKPNEVTLVGVLSACNHAGFVSHGRLFLAQMESTFGVIPTI 457

Query: 451 EIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD 510
           E Y CV+D+LGRAG +++AYE+++ MP + +  VW  LLGAC+ H    L ++AA +VL 
Sbjct: 458 EHYTCVIDMLGRAGHLEDAYEIVQKMPIQANPVVWRALLGACRLHGNAELAEIAARQVLQ 517

Query: 511 LKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDK 570
           L+P   G+Y+++SN+Y   G++EE  + RK M+    KK  G SWIE++D V  F   D+
Sbjct: 518 LEPEHCGSYVLMSNVYGVIGRYEEVLEVRKTMKEQNVKKTPGCSWIELKDGVHVFRTGDR 577

Query: 571 MGS 573
             S
Sbjct: 578 THS 580



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 125/435 (28%), Positives = 219/435 (50%), Gaps = 22/435 (5%)

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
           ++M+ N     AF     L++C   ++L+    +H + I  G   S     SL+++Y+ C
Sbjct: 5   IQMLNNVTKCVAF-----LQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKC 59

Query: 161 CISMDNARLVFND-MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
              M  A LVF D    +N  ++  +I+G+  +G    G   +K+M LEGV  + Y+F  
Sbjct: 60  G-QMGEAILVFYDPCHERNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPC 118

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
            VR C     V   K IH  ++K G   ++ V +++++ Y +   + DA + F E++ +D
Sbjct: 119 VVRTCCEVMEV---KKIHGCLLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRD 175

Query: 280 LITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           ++ WN +I GY K G   E L +F +M  +  +P+ FT T I++  A+   L  G+ VH 
Sbjct: 176 VVLWNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKTVHG 235

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
            +++ G D  ++++NALIDMY KC +I D+  IF  ++++D+ +W S++  +   G    
Sbjct: 236 IVMKMGYDSGVSVSNALIDMYGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQCGDHDG 295

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM--------NDYNVNPNK 450
            + LFD+M+ SG+ PD +    VL ACSH   +  G +    M        ++     N 
Sbjct: 296 TLRLFDKMLGSGILPDLVTITTVLPACSHLAALMHGREIHGYMIINGLGKDDENGAVDNL 355

Query: 451 EIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH--RLPNLGKLAALRV 508
            +   V+D+  + G +  A ++  SM  K D + W  ++     H   L  LG  + +  
Sbjct: 356 LVSNAVMDMYAKCGSMNNALKIFDSMS-KKDVASWNIMIMGYGMHGYALEALGMFSQMCE 414

Query: 509 LDLKPNMMGTYIILS 523
            + KPN +    +LS
Sbjct: 415 AEFKPNEVTLVGVLS 429


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 201/599 (33%), Positives = 323/599 (53%), Gaps = 12/599 (2%)

Query: 14  HCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMP 73
           HC  I    KQ+   + ++ +  +P    K  S LA +        G +  AR LF +M 
Sbjct: 20  HCTSISKT-KQAHALLLRTHLLHNPLFSSKLISFLALS------HSGDLNYARKLFTQMQ 72

Query: 74  ERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAAL 133
             D      MI GY       +A +++  MV   V  + +T   VL AC  + ++     
Sbjct: 73  NPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRR 132

Query: 134 VHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSG 193
            H   +K G    ++V N+L+  Y  C  S   A  VF++   ++ V+W  +I  + + G
Sbjct: 133 FHCEVLKNGFGSDLFVINALIQFYHNCG-SFGCACDVFDESTVRDVVTWNIMINAHLNKG 191

Query: 194 NGYGGLGVFKEML-LEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVM 252
                  +  EM  L+ +  +  +    V ACA  G +  GK +H+   + G   NL V 
Sbjct: 192 LSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVN 251

Query: 253 NSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFS 311
           N+ILDMYC+ D +  A + F+ + EKD+++W ++++G  KSG   E L +F KM+  +  
Sbjct: 252 NAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIE 311

Query: 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKI 371
            +  T   +++ACA   AL  G+ +H  I +  ++ +L L  AL+DMYAKCG+I  + ++
Sbjct: 312 LDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQV 371

Query: 372 FSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLV 431
           F  M  R++ TW +++ G   HGHG++AI LFD+M    + PD + F+A+L ACSHAGLV
Sbjct: 372 FRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLV 431

Query: 432 DEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490
           DEGL  F++M N + + P  E YGCVVDLL RA +V +A   I++MP K +  +W  LLG
Sbjct: 432 DEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLG 491

Query: 491 ACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKE 550
           AC+     +L +    RV++L+P+  G Y++LSN+YA   +W+   K RK M+  G +K 
Sbjct: 492 ACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKT 551

Query: 551 VGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMN-ETAYEPDIDCLIHDLEGE 608
            G SWIE+   +  F+A D+    T+ +Y ++E + R +N +  + P    ++ D+E E
Sbjct: 552 PGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEE 610


>gi|15240591|ref|NP_196831.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181128|sp|Q9LYU9.1|PP378_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g13270, chloroplastic; Flags: Precursor
 gi|7529282|emb|CAB86634.1| putative protein [Arabidopsis thaliana]
 gi|332004490|gb|AED91873.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 752

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 192/545 (35%), Positives = 310/545 (56%), Gaps = 5/545 (0%)

Query: 43  KGPSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFV 101
           + PS+L  N +++ Y +   +E+A  LFDEM E + VS T MI+ Y      ++A  +F 
Sbjct: 114 ENPSVLLQNCVLQMYCECRSLEDADKLFDEMSELNAVSRTTMISAYAEQGILDKAVGLFS 173

Query: 102 EMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
            M+ +   P +   +++LK+    ++L     +H   I+ GL  +  +E  ++++Y  C 
Sbjct: 174 GMLASGDKPPSSMYTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCG 233

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
             +  A+ VF+ M  K  V+ T L+ GY  +G     L +F +++ EGVE + + FS+ +
Sbjct: 234 W-LVGAKRVFDQMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVL 292

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
           +ACAS   ++ GK IHA V K G  S + V   ++D Y +      A + F E+ E + +
Sbjct: 293 KACASLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDV 352

Query: 282 TWNTIIAGY-EKSGSSECLNMFSKMKSERFSP-NCFTFTSIIAACATLAALSCGQQVHAG 339
           +W+ II+GY + S   E +  F  ++S+  S  N FT+TSI  AC+ LA  + G QVHA 
Sbjct: 353 SWSAIISGYCQMSQFEEAVKTFKSLRSKNASILNSFTYTSIFQACSVLADCNIGGQVHAD 412

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
            ++R L G+    +ALI MY+KCG + D+ ++F  M + D+V WT+ + G+  +G+  EA
Sbjct: 413 AIKRSLIGSQYGESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGHAYYGNASEA 472

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVD 458
           + LF++MV  G++P+ + F+AVLTACSHAGLV++G     +M   YNV P  + Y C++D
Sbjct: 473 LRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHCLDTMLRKYNVAPTIDHYDCMID 532

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518
           +  R+G + EA + +K+MPF+PD   W   L  C  H+   LG++A   +  L P     
Sbjct: 533 IYARSGLLDEALKFMKNMPFEPDAMSWKCFLSGCWTHKNLELGEIAGEELRQLDPEDTAG 592

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
           Y++  N+Y   GKWEE A+  K+M     KKE+  SWI+ + K+  FI  DK    TQ +
Sbjct: 593 YVLPFNLYTWAGKWEEAAEMMKLMNERMLKKELSCSWIQEKGKIHRFIVGDKHHPQTQEI 652

Query: 579 YGVLE 583
           Y  L+
Sbjct: 653 YEKLK 657



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 127/493 (25%), Positives = 240/493 (48%), Gaps = 51/493 (10%)

Query: 94  NQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEG-SIYVENS 152
           N+A+    EM +  V+ ++++   + +AC+ ++SLS+  L+H   ++ G+E  S+ ++N 
Sbjct: 65  NEAFEFLQEMDKAGVSVSSYSYQCLFEACRELRSLSHGRLLHD-RMRMGIENPSVLLQNC 123

Query: 153 LMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEM 212
           ++ +Y   C S+++A  +F++M   N VS TT+I+ YA  G     +G+F  ML  G + 
Sbjct: 124 VLQMYCE-CRSLEDADKLFDEMSELNAVSRTTMISAYAEQGILDKAVGLFSGMLASGDKP 182

Query: 213 NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYF 272
               ++  +++  +   + FG+ IHA VI+ G  SN  +   I++MY +   L  A + F
Sbjct: 183 PSSMYTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVF 242

Query: 273 DEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALS 331
           D+M  K  +    ++ GY ++G + + L +F  + +E    + F F+ ++ ACA+L  L+
Sbjct: 243 DQMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACASLEELN 302

Query: 332 CGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG 391
            G+Q+HA + + GL+  +++   L+D Y KC +   + + F E+ + + V+W++++ GY 
Sbjct: 303 LGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYC 362

Query: 392 AHGHGKEAIELFDEM-VKSGVRPDRIVFMAVLTACS-----------HA----------- 428
                +EA++ F  +  K+    +   + ++  ACS           HA           
Sbjct: 363 QMSQFEEAVKTFKSLRSKNASILNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQ 422

Query: 429 -------------GLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKS 475
                        G +D+  + F+SM+    NP+   +   +      G   EA  L + 
Sbjct: 423 YGESALITMYSKCGCLDDANEVFESMD----NPDIVAWTAFISGHAYYGNASEALRLFEK 478

Query: 476 M---PFKPDESVWGPLLGACKEHRLPNLGKL---AALRVLDLKPNMMGTYIILSNIYAAE 529
           M     KP+   +  +L AC    L   GK      LR  ++ P  +  Y  + +IYA  
Sbjct: 479 MVSCGMKPNSVTFIAVLTACSHAGLVEQGKHCLDTMLRKYNVAPT-IDHYDCMIDIYARS 537

Query: 530 GKWEEFAKFRKIM 542
           G  +E  KF K M
Sbjct: 538 GLLDEALKFMKNM 550


>gi|357130409|ref|XP_003566841.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 815

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 188/563 (33%), Positives = 314/563 (55%), Gaps = 14/563 (2%)

Query: 16  HKIPPIIKQSLQ-SVKKSSIQSDPPLIPKG---PSILATNLIKSYFDEGLIEEARTLFDE 71
           + +P ++K  ++  + K        +I +G    ++L + L++ Y      EEA  +F  
Sbjct: 253 YTLPTVLKCCMELGLAKYGQSVHASVIKRGLETDNVLNSCLVEMYSRCLSAEEAYEVFIR 312

Query: 72  MPERDVVSWTVMIAGYTSFNCHNQAWT---VFVEMVRNEVNPNAFTLSSVLKACKGMKSL 128
           + E DVV  + MI   + F+ H+ AW    +FV+M    V PN +    +          
Sbjct: 313 IDEPDVVHCSAMI---SCFDRHDMAWEALDLFVKMSGMGVKPNHYIFVGIAGVASRTGDA 369

Query: 129 SNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITG 188
           +    VH   +K G      V ++++++Y     ++ +A + F+ +   +  SW T+++ 
Sbjct: 370 NLCRSVHAYIVKSGFAMLKGVGDAILNMYVKVG-AVQDATVTFDLIHEPDTFSWNTILSA 428

Query: 189 YAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSN 248
           +    N   GL +FK+M  EG   N Y++   +R C S   + FG  +HA ++K G  ++
Sbjct: 429 FYSGSNCEQGLRIFKQMACEGFSANKYTYVSVLRCCTSLMNLRFGTQVHACILKSGLQND 488

Query: 249 LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKS 307
             V   ++DMY +  C + A   F+++ E+D  +W  I++GY K+  +E  +  F  M  
Sbjct: 489 TDVSRMLVDMYAQSGCFTSACLVFEQLKERDAFSWTVIMSGYAKTEEAEKVVEYFRSMLR 548

Query: 308 ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISD 367
           E   P+  T    ++ C+ +A+L  G Q+H+  ++ G + ++ ++ AL+DMY KCGNI+D
Sbjct: 549 ENIRPSDATLAVSLSVCSDMASLGSGLQLHSWAIKSGWNSSV-VSGALVDMYVKCGNIAD 607

Query: 368 SQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH 427
           ++ +F E   RD V W +++ GY  HGHG +A++ F +MV  G RPD I F+ VL+ACSH
Sbjct: 608 AEMLFHESETRDQVAWNTIICGYSQHGHGYKALDAFKQMVDEGKRPDGITFVGVLSACSH 667

Query: 428 AGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWG 486
           AGL++EG KYFKS++  Y + P  E Y C+VD+L +AGR+ EA  LI  MP  PD S+W 
Sbjct: 668 AGLLNEGRKYFKSLSSIYGITPTMEHYACMVDILSKAGRLVEAESLINQMPLAPDSSIWR 727

Query: 487 PLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546
            +LGAC+ HR   + + AA R+ +L+P+   + I+LSNIYA  G+W +  + R I+   G
Sbjct: 728 TILGACRIHRNIEIAERAAERLFELEPHDASSSILLSNIYADLGRWSDVTRVRNILLDHG 787

Query: 547 SKKEVGMSWIEVRDKVCGFIAND 569
            KKE G SWIE+  ++  F++ D
Sbjct: 788 VKKEPGCSWIEINGQIHMFLSQD 810



 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 216/420 (51%), Gaps = 2/420 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + L  +L+  Y   G + +AR +FD MP RD+V+WT MI+ +T+    +QA  +F  M +
Sbjct: 85  TFLLDSLLNMYCKCGRLVDARRVFDGMPHRDIVAWTAMISAHTAAGDSDQALDMFARMNQ 144

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             + PN FTL+SVLKAC G         VHG  +K       YV +SL++ Y T C  +D
Sbjct: 145 EGIAPNGFTLASVLKACSGGSHSKFTHQVHGQVVKLNGLDDPYVGSSLVEAY-TSCGELD 203

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A  V   +  ++DVSW  L+ GYA  G+    + + ++++  G E++ Y+    ++ C 
Sbjct: 204 AAETVLLGLPERSDVSWNALLNGYARHGDYRRVMIIIEKLVASGDEISKYTLPTVLKCCM 263

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
             G   +G+ +HA+VIK G  ++  + + +++MY R     +A + F  + E D++  + 
Sbjct: 264 ELGLAKYGQSVHASVIKRGLETDNVLNSCLVEMYSRCLSAEEAYEVFIRIDEPDVVHCSA 323

Query: 286 IIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I+ +++   + E L++F KM      PN + F  I    +     +  + VHA IV+ G
Sbjct: 324 MISCFDRHDMAWEALDLFVKMSGMGVKPNHYIFVGIAGVASRTGDANLCRSVHAYIVKSG 383

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
                 + +A+++MY K G + D+   F  + + D  +W +++  + +  + ++ + +F 
Sbjct: 384 FAMLKGVGDAILNMYVKVGAVQDATVTFDLIHEPDTFSWNTILSAFYSGSNCEQGLRIFK 443

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
           +M   G   ++  +++VL  C+    +  G +    +    +  + ++   +VD+  ++G
Sbjct: 444 QMACEGFSANKYTYVSVLRCCTSLMNLRFGTQVHACILKSGLQNDTDVSRMLVDMYAQSG 503



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 139/264 (52%), Gaps = 4/264 (1%)

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
           A++ CA    +  G+ +HA +++     +  +++S+L+MYC+   L DA + FD M  +D
Sbjct: 56  ALQDCAVRRTLRRGQELHARLLRSALHPDTFLLDSLLNMYCKCGRLVDARRVFDGMPHRD 115

Query: 280 LITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           ++ W  +I+ +  +G S + L+MF++M  E  +PN FT  S++ AC+  +      QVH 
Sbjct: 116 IVAWTAMISAHTAAGDSDQALDMFARMNQEGIAPNGFTLASVLKACSGGSHSKFTHQVHG 175

Query: 339 GIVR-RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
            +V+  GLD +  + ++L++ Y  CG +  ++ +   + +R  V+W +++ GY  HG  +
Sbjct: 176 QVVKLNGLD-DPYVGSSLVEAYTSCGELDAAETVLLGLPERSDVSWNALLNGYARHGDYR 234

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVV 457
             + + +++V SG    +     VL  C   GL   G     S+    +  +  +  C+V
Sbjct: 235 RVMIIIEKLVASGDEISKYTLPTVLKCCMELGLAKYGQSVHASVIKRGLETDNVLNSCLV 294

Query: 458 DLLGRAGRVKEAYELIKSMPFKPD 481
           ++  R    +EAYE+   +  +PD
Sbjct: 295 EMYSRCLSAEEAYEVFIRID-EPD 317


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  351 bits (900), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 197/596 (33%), Positives = 319/596 (53%), Gaps = 36/596 (6%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +L   +I  +FD   +  A ++F+ + E +++ W  M  G+   +    A  ++V M+  
Sbjct: 71  LLELCVISPHFDG--LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISL 128

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA-------- 158
            + PN++T   +LK+C   K+      +HG  +K G +  ++V  SL+ VY         
Sbjct: 129 GLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDA 188

Query: 159 ---------------TCCIS-------MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGY 196
                          T  I        +++A+ +F+++  K+ VSW  +I+GYA +GN  
Sbjct: 189 RKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYK 248

Query: 197 GGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSIL 256
             L +FKEM+   +  +  +    V ACA +G +  G+ +H+ +  HGFGSNL ++NS++
Sbjct: 249 EALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLM 308

Query: 257 DMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCF 315
           D+Y +   L  A   F+ +  KD+I+WNT+I GY       E L +F +M      PN  
Sbjct: 309 DLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDV 368

Query: 316 TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA--LANALIDMYAKCGNISDSQKIFS 373
           T  SI+ ACA L A+  G+ +H  I +R      A  L  +LIDMYAKCG+I  + ++F+
Sbjct: 369 TMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFN 428

Query: 374 EMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDE 433
            +  + L +W +M+ G+  HG    A ++F  M K G+ PD I F+ +L+ACS +G++D 
Sbjct: 429 SILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDL 488

Query: 434 GLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGAC 492
           G   F++M  DY + P  E YGC++DLLG +G  KEA E+I +M  +PD  +W  LL AC
Sbjct: 489 GRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKAC 548

Query: 493 KEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVG 552
           K      LG+  A  ++ ++P   G Y++LSNIYA  G+W E AK R ++   G KK  G
Sbjct: 549 KIRGNVELGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPG 608

Query: 553 MSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
            S IE+   V  FI  DK     + +YG+LE +   + +  + PD   ++ ++E E
Sbjct: 609 CSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEE 664


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 200/567 (35%), Positives = 316/567 (55%), Gaps = 9/567 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + LA +LI  Y     +  A  LFD MP  ++VSWT +++G T  + H  A   F  M R
Sbjct: 53  TFLANHLITMYSHCADVPSAVRLFDAMPRPNLVSWTTLVSGLTQNSMHRDALAAFSSMCR 112

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             + P  F LSS  +A   + +    A +H + ++ G +  ++V ++L D+Y+   + ++
Sbjct: 113 AGLVPTQFALSSAARAAAALAARHAGAQLHCVGVRLGFDAELFVASNLADMYSKSGLLVE 172

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGV---EMNPYSFSIAVR 222
             R VF+ M  K+ V+WT +I GYA +GN    +  F++M  EG+   + +     ++  
Sbjct: 173 ACR-VFDQMPQKDAVAWTAMIDGYAKNGNLEAAVIAFRDMRREGLVGADQHVLCSVLSAS 231

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFD-EMTEKDLI 281
                GW++  + IH+ V+K GF   + V N++ DMY +   + +A +    +    +++
Sbjct: 232 GGLKDGWLA--RAIHSCVMKSGFEQEVAVRNALTDMYAKAADMDNAARVVKIDQGSLNVV 289

Query: 282 TWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           +  ++I GY E     + L MF +++ +   PN FTF+S+I  CA  A L  G Q+HA +
Sbjct: 290 SATSLIDGYIETDCIEKALLMFIELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAEV 349

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           ++  L  +  +++ L+DMY KCG IS S ++F E+     + W + +     HGHG+EAI
Sbjct: 350 IKTSLISDSFVSSTLLDMYGKCGLISLSIQLFKEIEYHTDIAWNAAINVLAQHGHGREAI 409

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYN-VNPNKEIYGCVVDL 459
             FD M  SG+RP+ I F+++LTACSHAGLVDEGLKYF SM D++ + P  E Y C++D+
Sbjct: 410 RAFDRMTSSGIRPNHITFVSLLTACSHAGLVDEGLKYFYSMKDHHGIEPKGEHYSCIIDM 469

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
            GRAGR+ EA + I  MP KP+   W  LLGAC+      LG++AA  ++ L+P+  G +
Sbjct: 470 YGRAGRLDEAEKFIGEMPVKPNAYGWCSLLGACRMRGNKELGEIAADNMMKLEPDNTGVH 529

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVY 579
           + LS IYA+ G+WE+    RK+MR    KK  G SW++   K   F + D      + +Y
Sbjct: 530 VSLSGIYASLGQWEDVKAVRKLMRDNRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQEKIY 589

Query: 580 GVLEMLIRHMNETAYEPDIDCLIHDLE 606
             LE L   + E  Y PD   L  +LE
Sbjct: 590 EKLEELYERIKEEGYVPDTRFLPCNLE 616


>gi|224126745|ref|XP_002319916.1| predicted protein [Populus trichocarpa]
 gi|222858292|gb|EEE95839.1| predicted protein [Populus trichocarpa]
          Length = 606

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 193/555 (34%), Positives = 316/555 (56%), Gaps = 29/555 (5%)

Query: 7   LSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGL-IEEA 65
            ++   FH H I            KS + +D          +  +L+  YF  G  + EA
Sbjct: 76  FTHGIQFHSHAI------------KSGLDTD--------RFVGNSLLALYFKLGPNLFEA 115

Query: 66  RTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGM 125
           R +FD +  +D++SWT MI GY       ++  +F+EM+   + PN FTLS+V+KAC G+
Sbjct: 116 RRVFDGLFYKDLISWTSMITGYVKVEKPKKSLELFLEMLGLGIEPNGFTLSAVIKACSGL 175

Query: 126 KSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTL 185
             L      HG+ +  G + +  +  +L+D+Y     ++D+A LVF ++   + + WT++
Sbjct: 176 GDLRLGKCFHGVVMVRGFDLNDVISTALIDMYGRNS-AVDDAILVFVELPQPDAICWTSI 234

Query: 186 ITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG 244
           I+ +  +      LG F  M  + G+  + ++F   + AC + G +  GK +HA VI  G
Sbjct: 235 ISAFTRNDVYDKALGFFYSMCRKHGLSPDGFTFGTVLTACGNLGRLKQGKEVHAKVITSG 294

Query: 245 FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFS 303
              N+ V +S++DMY +   ++ +   FD M+ K+L++W  ++ GY ++G  E  + +F 
Sbjct: 295 LSGNVFVESSLVDMYGKCRLVNQSQCVFDRMSVKNLVSWTALLGGYCQNGDFESVIRIFR 354

Query: 304 KMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG 363
           + K      + ++F +++ ACA LAA+  G++VH   V+R    ++   +AL+D+YAKCG
Sbjct: 355 EGKK----VDTYSFGTVLRACAGLAAVRQGKEVHCQYVKRCCWRDVVTESALVDLYAKCG 410

Query: 364 NISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLT 423
            I  + +IF  MS R+L+TW SM+ G+  +G G E  +LFDEM++ G+RPD I F+ VL 
Sbjct: 411 CIDFAYRIFVRMSVRNLITWNSMIYGFAQNGRGGEVFQLFDEMIEEGIRPDYISFVGVLF 470

Query: 424 ACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDE 482
           ACSHAGLVD+G KYF +M + Y + P  E Y C++DLLGRAG ++EA  LI++   + + 
Sbjct: 471 ACSHAGLVDQGKKYFAAMTEVYEIKPGIEHYNCMIDLLGRAGLLEEAENLIENANCRDEP 530

Query: 483 SVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIM 542
           S+W  LLGAC         +  A + ++LKP+   +Y+ L+N+Y A G+W++  K R +M
Sbjct: 531 SLWTVLLGACAASPHSATAERIAKKAVELKPDHHLSYVYLANVYRAVGRWDDAVKIRNLM 590

Query: 543 RGMGSKKEVGMSWIE 557
              G  K  G SWIE
Sbjct: 591 TKRGVGKMPGTSWIE 605



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 133/444 (29%), Positives = 217/444 (48%), Gaps = 47/444 (10%)

Query: 113 FTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFN 172
           F  +S+L+ C    S ++    H  AIK GL+   +V NSL+ +Y     ++  AR VF+
Sbjct: 61  FFYASLLQTCTKAVSFTHGIQFHSHAIKSGLDTDRFVGNSLLALYFKLGPNLFEARRVFD 120

Query: 173 DMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSF 232
            + +K+ +SWT++ITGY         L +F EML  G+E N ++ S  ++AC+  G +  
Sbjct: 121 GLFYKDLISWTSMITGYVKVEKPKKSLELFLEMLGLGIEPNGFTLSAVIKACSGLGDLRL 180

Query: 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEK 292
           GK  H  V+  GF  N  +  +++DMY R   + DA   F E+ + D I W +II+ + +
Sbjct: 181 GKCFHGVVMVRGFDLNDVISTALIDMYGRNSAVDDAILVFVELPQPDAICWTSIISAFTR 240

Query: 293 SGS-SECLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           +    + L  F  M +    SP+ FTF +++ AC  L  L  G++VHA ++  GL GN+ 
Sbjct: 241 NDVYDKALGFFYSMCRKHGLSPDGFTFGTVLTACGNLGRLKQGKEVHAKVITSGLSGNVF 300

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           + ++L+DMY KC  ++ SQ +F  MS ++LV+WT+++ GY  +G  +  I +F E    G
Sbjct: 301 VESSLVDMYGKCRLVNQSQCVFDRMSVKNLVSWTALLGGYCQNGDFESVIRIFRE----G 356

Query: 411 VRPDRIVFMAVLTAC-----------------------------------SHAGLVDEGL 435
            + D   F  VL AC                                   +  G +D   
Sbjct: 357 KKVDTYSFGTVLRACAGLAAVRQGKEVHCQYVKRCCWRDVVTESALVDLYAKCGCIDFAY 416

Query: 436 KYFKSMNDYN-VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKE 494
           + F  M+  N +  N  IYG   +  GR G V + ++ +     +PD   +  +L AC  
Sbjct: 417 RIFVRMSVRNLITWNSMIYGFAQN--GRGGEVFQLFDEMIEEGIRPDYISFVGVLFACSH 474

Query: 495 HRLPNLGK---LAALRVLDLKPNM 515
             L + GK    A   V ++KP +
Sbjct: 475 AGLVDQGKKYFAAMTEVYEIKPGI 498



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 109/207 (52%), Gaps = 3/207 (1%)

Query: 287 IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I  Y KSGS  E +++ + +   R S   F + S++  C    + + G Q H+  ++ GL
Sbjct: 32  IIQYCKSGSLFEAIHVLNSIDWTRLSNKPFFYASLLQTCTKAVSFTHGIQFHSHAIKSGL 91

Query: 346 DGNLALANALIDMYAKCG-NISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           D +  + N+L+ +Y K G N+ +++++F  +  +DL++WTSM+ GY      K+++ELF 
Sbjct: 92  DTDRFVGNSLLALYFKLGPNLFEARRVFDGLFYKDLISWTSMITGYVKVEKPKKSLELFL 151

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
           EM+  G+ P+     AV+ ACS  G +  G  +   +     + N  I   ++D+ GR  
Sbjct: 152 EMLGLGIEPNGFTLSAVIKACSGLGDLRLGKCFHGVVMVRGFDLNDVISTALIDMYGRNS 211

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGA 491
            V +A  +   +P +PD   W  ++ A
Sbjct: 212 AVDDAILVFVELP-QPDAICWTSIISA 237


>gi|356540347|ref|XP_003538651.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
           chloroplastic-like [Glycine max]
          Length = 753

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 188/536 (35%), Positives = 298/536 (55%), Gaps = 3/536 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           +++ Y D      A   FD++ +RD+ SW  +I+ YT     ++A  +F+ M+   + PN
Sbjct: 120 ILQMYCDCKSFTAAERFFDKIVDRDLSSWATIISAYTEEGRIDEAVGLFLRMLDLGIIPN 179

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
               S+++ +      L     +H   I+      I +E  + ++Y  C   +D A +  
Sbjct: 180 FSIFSTLIMSFADPSMLDLGKQIHSQLIRIEFAADISIETLISNMYVKCGW-LDGAEVAT 238

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           N M  K+ V+ T L+ GY  +      L +F +M+ EGVE++ + FSI ++ACA+ G + 
Sbjct: 239 NKMTRKSAVACTGLMVGYTQAARNRDALLLFSKMISEGVELDGFVFSIILKACAALGDLY 298

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            GK IH+  IK G  S + V   ++D Y +      A Q F+ + E +  +W+ +IAGY 
Sbjct: 299 TGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQAFESIHEPNDFSWSALIAGYC 358

Query: 292 KSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           +SG     L +F  ++S+    N F + +I  AC+ ++ L CG Q+HA  +++GL   L+
Sbjct: 359 QSGKFDRALEVFKTIRSKGVLLNSFIYNNIFQACSAVSDLICGAQIHADAIKKGLVAYLS 418

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
             +A+I MY+KCG +  + + F  +   D V WT+++  +  HG   EA+ LF EM  SG
Sbjct: 419 GESAMITMYSKCGKVDYAHQAFLAIDKPDTVAWTAIICAHAYHGKASEALRLFKEMQGSG 478

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEA 469
           VRP+ + F+ +L ACSH+GLV EG ++  SM D Y VNP  + Y C++D+  RAG + EA
Sbjct: 479 VRPNVVTFIGLLNACSHSGLVKEGKQFLDSMTDKYGVNPTIDHYNCMIDIYSRAGLLLEA 538

Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529
            E+I+SMPF+PD   W  LLG C   R   +G +AA  +  L P    TY+I+ N+YA  
Sbjct: 539 LEVIRSMPFEPDVMSWKSLLGGCWSRRNLEIGMIAADNIFRLDPLDSATYVIMFNLYALA 598

Query: 530 GKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           GKW+E A+FRK+M     +KEV  SWI V+ KV  F+  D+    T+ +Y  L+ L
Sbjct: 599 GKWDEAAQFRKMMAERNLRKEVSCSWIIVKGKVHRFVVGDRHHPQTEQIYSKLKEL 654



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 114/448 (25%), Positives = 210/448 (46%), Gaps = 23/448 (5%)

Query: 36  SDPPLIPKGPSI--------------LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWT 81
           +DP ++  G  I              + T +   Y   G ++ A    ++M  +  V+ T
Sbjct: 191 ADPSMLDLGKQIHSQLIRIEFAADISIETLISNMYVKCGWLDGAEVATNKMTRKSAVACT 250

Query: 82  VMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKE 141
            ++ GYT    +  A  +F +M+   V  + F  S +LKAC  +  L     +H   IK 
Sbjct: 251 GLMVGYTQAARNRDALLLFSKMISEGVELDGFVFSIILKACAALGDLYTGKQIHSYCIKL 310

Query: 142 GLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGV 201
           GLE  + V   L+D Y  C    + AR  F  +   ND SW+ LI GY  SG     L V
Sbjct: 311 GLESEVSVGTPLVDFYVKCA-RFEAARQAFESIHEPNDFSWSALIAGYCQSGKFDRALEV 369

Query: 202 FKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR 261
           FK +  +GV +N + ++   +AC++   +  G  IHA  IK G  + L   ++++ MY +
Sbjct: 370 FKTIRSKGVLLNSFIYNNIFQACSAVSDLICGAQIHADAIKKGLVAYLSGESAMITMYSK 429

Query: 262 FDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSI 320
              +  A+Q F  + + D + W  II  +   G +SE L +F +M+     PN  TF  +
Sbjct: 430 CGKVDYAHQAFLAIDKPDTVAWTAIICAHAYHGKASEALRLFKEMQGSGVRPNVVTFIGL 489

Query: 321 IAACATLAALSCGQQVHAGIVRR-GLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DR 378
           + AC+    +  G+Q    +  + G++  +   N +ID+Y++ G + ++ ++   M  + 
Sbjct: 490 LNACSHSGLVKEGKQFLDSMTDKYGVNPTIDHYNCMIDIYSRAGLLLEALEVIRSMPFEP 549

Query: 379 DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP-DRIVFMAVLTACSHAGLVDEGLKY 437
           D+++W S++ G  +  + +  +   D + +  + P D   ++ +    + AG  DE  ++
Sbjct: 550 DVMSWKSLLGGCWSRRNLEIGMIAADNIFR--LDPLDSATYVIMFNLYALAGKWDEAAQF 607

Query: 438 FKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
            K M + N+   KE+    + + G+  R
Sbjct: 608 RKMMAERNL--RKEVSCSWIIVKGKVHR 633



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 165/328 (50%), Gaps = 7/328 (2%)

Query: 203 KEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRF 262
           + M + G+ +NP S+    + C + G +S GKL H  + +    SN  + N IL MYC  
Sbjct: 69  RNMDIAGISINPRSYEYLFKMCGTLGALSDGKLFHNRLQRMA-NSNKFIDNCILQMYCDC 127

Query: 263 DCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSII 321
              + A ++FD++ ++DL +W TII+ Y + G   E + +F +M      PN   F+++I
Sbjct: 128 KSFTAAERFFDKIVDRDLSSWATIISAYTEEGRIDEAVGLFLRMLDLGIIPNFSIFSTLI 187

Query: 322 AACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLV 381
            + A  + L  G+Q+H+ ++R     ++++   + +MY KCG +  ++   ++M+ +  V
Sbjct: 188 MSFADPSMLDLGKQIHSQLIRIEFAADISIETLISNMYVKCGWLDGAEVATNKMTRKSAV 247

Query: 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441
             T +M+GY      ++A+ LF +M+  GV  D  VF  +L AC+  G +  G +     
Sbjct: 248 ACTGLMVGYTQAARNRDALLLFSKMISEGVELDGFVFSIILKACAALGDLYTGKQIHSYC 307

Query: 442 NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL-GACKEHRLPNL 500
               +     +   +VD   +  R + A +  +S+  +P++  W  L+ G C+  +    
Sbjct: 308 IKLGLESEVSVGTPLVDFYVKCARFEAARQAFESI-HEPNDFSWSALIAGYCQSGKFDR- 365

Query: 501 GKLAALRVLDLKPNMMGTYIILSNIYAA 528
             L   + +  K  ++ ++ I +NI+ A
Sbjct: 366 -ALEVFKTIRSKGVLLNSF-IYNNIFQA 391


>gi|147765322|emb|CAN64903.1| hypothetical protein VITISV_019802 [Vitis vinifera]
          Length = 625

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 190/566 (33%), Positives = 326/566 (57%), Gaps = 13/566 (2%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S LAT LI +Y        +R +FD +  ++V  W  +I G      +N+A+ +F +M  
Sbjct: 58  SFLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGCVKNRLYNEAFQLFNQMCS 117

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           ++V P+ FTLS++ K    + +L +   +HG +I+ G      V NS+M +Y  C  + D
Sbjct: 118 SDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRTGFVSDTVVANSIMSMYCKCG-NFD 176

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGN---GYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            +R VF++M  +N  SW  LI GYA SGN           K+M ++ V  + Y+ S  + 
Sbjct: 177 ESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLP 236

Query: 223 AC-ASTGWVSFGKLIHAAVIKH----GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE 277
            C    G   +G+ +H  ++K+    G  S++ +   ++DMY R + +    + FD M  
Sbjct: 237 LCDGDMGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKC 296

Query: 278 KDLITWNTIIAGYEKSGSS-ECLNMFSKMKS-ERFSPNCFTFTSIIAACATLAALSCGQQ 335
           +++ +W  +I GY ++G S E L++F  M+  +   PN  +  S++ AC++ + L  G+Q
Sbjct: 297 RNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGVEPNRVSLVSVLPACSSFSGLLSGRQ 356

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHG 394
           +H   VR+ L+  ++L NALIDMY+KCG++  ++++F + S  +D ++W+SM+ GYG HG
Sbjct: 357 IHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHG 416

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS-MNDYNVNPNKEIY 453
            G+EAI L+D+M+++G+RPD I  + +L+AC  +GLV+EGL  + S +NDY + P  EI 
Sbjct: 417 KGQEAILLYDKMLQAGIRPDMITTVGILSACGRSGLVNEGLNIYSSVINDYGIEPTLEIC 476

Query: 454 GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513
            C+VD+LGRAG++  A + IK++P +P  SVWG L+     H    + +LA   ++ L+P
Sbjct: 477 ACIVDMLGRAGQLDRALDFIKAIPVEPGPSVWGALVSCSIIHGDLEMQELAYRFLIQLEP 536

Query: 514 NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGS 573
                Y+ +SN+YA+  +W+  A+ R++M+    +K  G SWI + +K   F   DK   
Sbjct: 537 KNPSNYVSISNLYASSRRWDAVAEVRRMMKDKRLRKVPGCSWISINNKTHCFYVADKAHP 596

Query: 574 HTQYVYGVLEMLIRHMNETAYEPDID 599
            +  +Y +L+ L+  MN+    P ++
Sbjct: 597 SSTSIYNMLDDLLLTMNDAICSPHLE 622



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 121/433 (27%), Positives = 208/433 (48%), Gaps = 22/433 (5%)

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           E +P+   L S L      KSL      H   +  GL  + ++   L+  YA C     +
Sbjct: 19  EFDPSLALLQS-LHFSVTHKSLKLTRQSHSRILSLGLSQNSFLATKLIFAYAICQHPY-H 76

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           +RLVF+ ++ KN   W +LI G   +        +F +M    V  + ++ S   +  + 
Sbjct: 77  SRLVFDSLQHKNVFLWNSLINGCVKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSE 136

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G +  GK IH   I+ GF S+  V NSI+ MYC+     ++ + FDEMT ++  +WN +
Sbjct: 137 LGALFSGKSIHGKSIRTGFVSDTVVANSIMSMYCKCGNFDESRKVFDEMTIRNSGSWNVL 196

Query: 287 IAGYEKSGS----SECLNMFSKMKSERFSPNCFTFTSIIAAC-ATLAALSCGQQVHAGIV 341
           IAGY  SG+     E      +M+ +   P+ +T +S++  C   +     G+++H  IV
Sbjct: 197 IAGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDMGKWDYGRELHCYIV 256

Query: 342 RR----GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
           +     GLD ++ L   LIDMY++   +   +++F  M  R++ +WT+M+ GY  +G   
Sbjct: 257 KNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSD 316

Query: 398 EAIELFDEM-VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP--NKEIYG 454
           EA+ LF +M V  GV P+R+  ++VL ACS       GL   + ++ + V    N E+  
Sbjct: 317 EALSLFRDMQVIDGVEPNRVSLVSVLPACSSF----SGLLSGRQIHGFAVRKELNNEVSL 372

Query: 455 C--VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD-- 510
           C  ++D+  + G +  A  + +      D   W  ++     H       L   ++L   
Sbjct: 373 CNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAG 432

Query: 511 LKPNMMGTYIILS 523
           ++P+M+ T  ILS
Sbjct: 433 IRPDMITTVGILS 445



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 6/132 (4%)

Query: 309 RFSPNCFTFTSIIAACATL------AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362
           R+  + F F   +A   +L       +L   +Q H+ I+  GL  N  LA  LI  YA C
Sbjct: 12  RYYASAFEFDPSLALLQSLHFSVTHKSLKLTRQSHSRILSLGLSQNSFLATKLIFAYAIC 71

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
            +   S+ +F  +  +++  W S++ G   +    EA +LF++M  S V PD      + 
Sbjct: 72  QHPYHSRLVFDSLQHKNVFLWNSLINGCVKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLS 131

Query: 423 TACSHAGLVDEG 434
              S  G +  G
Sbjct: 132 KVSSELGALFSG 143


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 182/540 (33%), Positives = 309/540 (57%), Gaps = 3/540 (0%)

Query: 62  IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121
           I+ A ++F+ + + +  ++ VMI G       + A  +F +M    V  + FT SSVLKA
Sbjct: 71  IDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKA 130

Query: 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS 181
           C  MK+L     VH + +K G + + +VEN+L+ +YA C   +  AR VF+ M  ++ V+
Sbjct: 131 CSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCG-QIGVARHVFDGMPERSIVA 189

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           W ++++GY  +G     + +F+++L   +E +  +    + AC     +  G+LI   ++
Sbjct: 190 WNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIV 249

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLN 300
             G   N  +  S++DMY +   +  A + FDEM ++D++ W+ +I+GY ++    E LN
Sbjct: 250 SKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALN 309

Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360
           +F +M+     PN  T  S++ +CA L A   G+ VH  I ++ +   + L   LID YA
Sbjct: 310 LFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYA 369

Query: 361 KCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420
           KCG I  S ++F EMS +++ TWT+++ G   +G GK A+E F  M+++ V+P+ + F+ 
Sbjct: 370 KCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIG 429

Query: 421 VLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
           VL+ACSHA LVD+G   F SM  D+++ P  E YGC+VD+LGRAG ++EAY+ I +MPF 
Sbjct: 430 VLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFP 489

Query: 480 PDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFR 539
           P+  VW  LL +C+ H+   + + +   +  L+P   G YI+LSN YA  G+ E+  + R
Sbjct: 490 PNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVGRVEDAIRVR 549

Query: 540 KIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDID 599
            +++    KK  G S IE+   V  F + D    H++ ++  L+ +++ +    Y P+ D
Sbjct: 550 SLIKEKEIKKIPGCSLIELDGVVHEFFSEDGEHKHSKEIHDALDKMMKQIKRLGYVPNTD 609



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 112/366 (30%), Positives = 185/366 (50%), Gaps = 5/366 (1%)

Query: 116 SSVLKACKGMKSLSNAALVHGMAIK-EGLEGSIYVENSLMDVYATCCISMDNARLVFNDM 174
           S +L+ CK  K L     VH   +K   L   I  E  L         ++D A  +FN +
Sbjct: 25  SLILQQCKTPKDLQQ---VHAHLLKTRRLLDPIITEAVLESAALLLPDTIDYALSIFNHI 81

Query: 175 KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGK 234
                 ++  +I G A   +    L +FK+M  + V+ + ++FS  ++AC+    +  G+
Sbjct: 82  DKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGE 141

Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG 294
            +HA ++K GF SN  V N+++ MY     +  A   FD M E+ ++ WN++++GY K+G
Sbjct: 142 QVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNG 201

Query: 295 S-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353
              E + +F K+   R   +  T  S++ AC  LA L  G+ +   IV +GL  N  L  
Sbjct: 202 LWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTT 261

Query: 354 ALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP 413
           +LIDMYAKCG +  ++K+F EM  RD+V W++M+ GY      KEA+ LF EM K  V P
Sbjct: 262 SLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYP 321

Query: 414 DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELI 473
           + +  ++VL +C+  G  + G      +    +     +   ++D   + G +  + E+ 
Sbjct: 322 NEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVF 381

Query: 474 KSMPFK 479
           K M FK
Sbjct: 382 KEMSFK 387



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 172/355 (48%), Gaps = 6/355 (1%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           K    +   LI+ Y + G I  AR +FD MPER +V+W  M++GYT     ++   +F +
Sbjct: 153 KSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRK 212

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           ++   +  +  T+ SVL AC  + +L    L+    + +GL  +  +  SL+D+YA C  
Sbjct: 213 ILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCG- 271

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            +D AR +F++M  ++ V+W+ +I+GYA +      L +F EM    V  N  +    + 
Sbjct: 272 QVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLY 331

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           +CA  G    GK +H  + K      + +   ++D Y +   +  + + F EM+ K++ T
Sbjct: 332 SCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFT 391

Query: 283 WNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           W  +I G   +G  +  L  FS M      PN  TF  +++AC+    +  G+ +   + 
Sbjct: 392 WTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSM- 450

Query: 342 RRGLDGNLALAN--ALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAH 393
           RR  D    + +   ++D+  + G + ++ +    M    + V W +++    AH
Sbjct: 451 RRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAH 505


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 187/564 (33%), Positives = 310/564 (54%), Gaps = 10/564 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMP-ERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           IL  +L+  Y   G +E+A+ LF+ M   R V SW  MIA Y       +A  ++ +M  
Sbjct: 158 ILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDM-- 215

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISM 164
            +V P+  T +SVL AC  +  L     +H +    G E  + ++N+L+ +YA C C  +
Sbjct: 216 -DVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKC--L 272

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           D+A  +F  +  ++ VSW+ +I  +A +      +  + +M LEGV  N Y+F+  + AC
Sbjct: 273 DDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLAC 332

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           AS G +  G+ +H  ++ +G+   L    +++D+Y  +  L +A   FD++  +D   W 
Sbjct: 333 ASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWT 392

Query: 285 TIIAGYEKSG-SSECLNMFSKMKSERFSPNC-FTFTSIIAACATLAALSCGQQVHAGIVR 342
            +I GY K G  +  L ++ +MK+    P     ++ +I+ACA+L A +  +Q H+ I  
Sbjct: 393 VLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEA 452

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            G+  +  LA +L++MY++ GN+  ++++F +MS RD + WT+++ GY  HG    A+ L
Sbjct: 453 DGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGL 512

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLG 461
           + EM   G  P  + FM VL ACSHAGL ++G + F S+ +DY ++PN   Y C++DLL 
Sbjct: 513 YKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLS 572

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           RAGR+ +A ELI +MP +P++  W  LLGA + H+       AA ++  L P    +Y++
Sbjct: 573 RAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVL 632

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGV 581
           LSN++A  G     A  R  M   G KK  G SWIEV D++  F   D      Q ++  
Sbjct: 633 LSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAE 692

Query: 582 LEMLIRHMNETAYEPDIDCLIHDL 605
           L+ L   + E  Y P+ + ++HD+
Sbjct: 693 LQRLSPKIKEAGYVPESEEVLHDV 716



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 128/476 (26%), Positives = 242/476 (50%), Gaps = 14/476 (2%)

Query: 24  QSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVM 83
           Q L+SV++  I             L   ++++Y   G +  AR  FD +  ++  SW  M
Sbjct: 38  QDLESVRQ--IHDRISGAASANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSM 95

Query: 84  IAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHG-MAIKEG 142
           +  Y     +  A  ++  M   ++ PN    ++VL AC  +++L     +H  ++  +G
Sbjct: 96  LTAYAQNGHYRAALDLYKRM---DLQPNPVVYTTVLGACASIEALEEGKAIHSRISGTKG 152

Query: 143 LEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDV-SWTTLITGYAHSGNGYGGLGV 201
           L+  + +ENSL+ +YA C  S+++A+ +F  M  +  V SW  +I  YA SG+    + +
Sbjct: 153 LKLDVILENSLLTMYAKCG-SLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRL 211

Query: 202 FKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR 261
           +++M    VE +  +F+  + AC++ G +  G+ IHA +   G   +L + N++L MY R
Sbjct: 212 YEDM---DVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYAR 268

Query: 262 FDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSI 320
             CL DA + F  +  +D+++W+ +IA + E     E +  +SKM+ E   PN +TF S+
Sbjct: 269 CKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASV 328

Query: 321 IAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDL 380
           + ACA++  L  G+ VH  I+  G    L    AL+D+Y   G++ +++ +F ++ +RD 
Sbjct: 329 LLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDE 388

Query: 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP-DRIVFMAVLTACSHAGLVDEGLKYFK 439
             WT ++ GY   GH    +EL+ EM  +   P  +I++  V++AC+  G   +  +   
Sbjct: 389 GLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHS 448

Query: 440 SMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            +    +  +  +   +V++  R G ++ A ++   M  + D   W  L+    +H
Sbjct: 449 DIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSR-DTLAWTTLIAGYAKH 503



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 132/429 (30%), Positives = 221/429 (51%), Gaps = 24/429 (5%)

Query: 119 LKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKN 178
           L+ C+ ++S+     +H   I      ++++ N ++  Y  C  S+ +AR+ F+ +  KN
Sbjct: 34  LRQCQDLESVRQ---IHDR-ISGAASANVFLGNEIVRAYGKCG-SVASARVAFDAIARKN 88

Query: 179 DVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHA 238
           D SW +++T YA +G+    L ++K M L+    NP  ++  + ACAS   +  GK IH+
Sbjct: 89  DYSWGSMLTAYAQNGHYRAALDLYKRMDLQP---NPVVYTTVLGACASIEALEEGKAIHS 145

Query: 239 AVI-KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLITWNTIIAGYEKSGS- 295
            +    G   ++ + NS+L MY +   L DA + F+ M+  + + +WN +IA Y +SG  
Sbjct: 146 RISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHF 205

Query: 296 SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
            E + ++  M  E   P+  TFTS+++AC+ L  L  G+++HA I  RG + +L+L NAL
Sbjct: 206 EEAIRLYEDMDVE---PSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNAL 262

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           + MYA+C  + D+ KIF  +  RD+V+W++M+  +       EAIE + +M   GVRP+ 
Sbjct: 263 LTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNY 322

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSM--NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELI 473
             F +VL AC+  G +  G      +  N Y +         +VDL    G + EA  L 
Sbjct: 323 YTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGT--ALVDLYTSYGSLDEARSLF 380

Query: 474 KSMPFKPDESVWGPLLGACKE--HRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK 531
             +  + DE +W  L+G   +  HR    G L   R +     +  T II S + +A   
Sbjct: 381 DQIENR-DEGLWTVLIGGYSKQGHR---TGVLELYREMKNTTKVPATKIIYSCVISACAS 436

Query: 532 WEEFAKFRK 540
              FA  R+
Sbjct: 437 LGAFADARQ 445


>gi|225445472|ref|XP_002281953.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial [Vitis vinifera]
          Length = 773

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 194/533 (36%), Positives = 317/533 (59%), Gaps = 19/533 (3%)

Query: 64  EARTLFDEMPERDVVSWTVMIAGYTSF-NCHNQAWTVFVEMVRNEVNPNAFTLSSVLKAC 122
           EAR +FDEM  +D+VSW  M++GY    N   +A  VF+EM++  +  +  + +  + AC
Sbjct: 229 EARRVFDEMRNKDLVSWNAMLSGYAQEGNSGLEAILVFLEMLKEGMKLDHVSFTGAISAC 288

Query: 123 KGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSW 182
              K       +H +A+K G +  + V N L+  Y+ C   +++A+LVF  +  +N VSW
Sbjct: 289 GHGKEFELGRQIHSLAVKIGYDTHVKVCNVLISTYSKC-EDIEDAKLVFESIIDRNVVSW 347

Query: 183 TTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIK 242
           TT+I+             +F EM  +GV  N  +F   + A      V  G++IH   +K
Sbjct: 348 TTMISISEEDATS-----LFNEMRRDGVYPNDVTFVGLIHAITMKNLVEEGQMIHGVCVK 402

Query: 243 HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNM 301
             F S L V NS++ MY +F+ +SD+ + F+E+  +++I+WN++I+GY ++G   E L  
Sbjct: 403 TSFLSELNVSNSLITMYAKFESMSDSMKVFEELNYREIISWNSLISGYAQNGLWQEALQT 462

Query: 302 F-SKMKSERFSPNCFTFTSIIAACATLAALSC--GQQVHAGIVRRGLDGNLALANALIDM 358
           F S +   R  PN FTF S++++ A+  A+S   GQ+ H+ I++ GL+ N  +++AL+DM
Sbjct: 463 FLSALMESR--PNEFTFGSVLSSIASAEAISMRHGQRCHSHILKLGLNTNPIVSSALLDM 520

Query: 359 YAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVF 418
           YAK G+I +S  +FSE   ++ V WT+++  +  HG  +  + LF +M + GV+PD I F
Sbjct: 521 YAKRGSICESLGVFSETPLKNEVAWTAIISAHARHGDYEAVMNLFKDMEREGVKPDSITF 580

Query: 419 MAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMP 477
           +AV+TAC   G+VD G + F SM  D+ + P+ E Y  +VD+LGRAGR+KEA E +  +P
Sbjct: 581 LAVITACGRKGMVDTGYQLFNSMVKDHLIEPSPEHYSSMVDMLGRAGRLKEAEEFVGQIP 640

Query: 478 FKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAK 537
                SV   LLGAC+ H   ++ K  A  +++++P   G+Y+++SN+YA +G+WE+ AK
Sbjct: 641 GGAGLSVLQSLLGACRIHGNVDMAKRVADDLIEMEPMGSGSYVLMSNLYAEKGEWEKVAK 700

Query: 538 FRKIMRGMGSKKEVGMSWIEVRDK-----VCGFIANDKMGSHTQYVYGVLEML 585
            RK MR  G +KE+G SW++V D      + GF ++DK    ++ +Y + E L
Sbjct: 701 IRKGMRERGVRKEIGFSWVDVGDADGSLYLHGFSSDDKFHPQSEEIYRMAETL 753



 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 126/448 (28%), Positives = 238/448 (53%), Gaps = 13/448 (2%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
           +L+  Y   GL + A  +F+ +   D+VSW  +++G   F   + A    + M    V  
Sbjct: 118 SLMNMYCKAGLFDRALVVFENLNNPDIVSWNTVLSG---FQRSDDALNFALRMNFTGVAF 174

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           +A T ++VL  C   +       +H   +K GL+  ++V N+L+ +Y+ CC  +  AR V
Sbjct: 175 DAVTCTTVLAFCSDHEGFIFGFQLHSRILKCGLDCEVFVGNALITMYSRCC-RLVEARRV 233

Query: 171 FNDMKWKNDVSWTTLITGYAHSGN-GYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           F++M+ K+ VSW  +++GYA  GN G   + VF EML EG++++  SF+ A+ AC     
Sbjct: 234 FDEMRNKDLVSWNAMLSGYAQEGNSGLEAILVFLEMLKEGMKLDHVSFTGAISACGHGKE 293

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
              G+ IH+  +K G+ +++ V N ++  Y + + + DA   F+ + ++++++W T+I+ 
Sbjct: 294 FELGRQIHSLAVKIGYDTHVKVCNVLISTYSKCEDIEDAKLVFESIIDRNVVSWTTMISI 353

Query: 290 YEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
            E+  +S    +F++M+ +   PN  TF  +I A      +  GQ +H   V+      L
Sbjct: 354 SEEDATS----LFNEMRRDGVYPNDVTFVGLIHAITMKNLVEEGQMIHGVCVKTSFLSEL 409

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
            ++N+LI MYAK  ++SDS K+F E++ R++++W S++ GY  +G  +EA++ F   +  
Sbjct: 410 NVSNSLITMYAKFESMSDSMKVFEELNYREIISWNSLISGYAQNGLWQEALQTFLSALME 469

Query: 410 GVRPDRIVFMAVLTACSHAGLVD--EGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
             RP+   F +VL++ + A  +    G +    +    +N N  +   ++D+  + G + 
Sbjct: 470 S-RPNEFTFGSVLSSIASAEAISMRHGQRCHSHILKLGLNTNPIVSSALLDMYAKRGSIC 528

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEH 495
           E+  +    P K +E  W  ++ A   H
Sbjct: 529 ESLGVFSETPLK-NEVAWTAIISAHARH 555



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 103/328 (31%), Positives = 177/328 (53%), Gaps = 13/328 (3%)

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
           N +  T++ VLKAC G   L     +H  AI  G    + V NSLM++Y    +  D A 
Sbjct: 77  NIDQVTVAIVLKACCGDSKL--GCQIHAFAISSGFISHVTVPNSLMNMYCKAGL-FDRAL 133

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
           +VF ++   + VSW T+++G+  S +    L     M   GV  +  + +  +  C+   
Sbjct: 134 VVFENLNNPDIVSWNTVLSGFQRSDD---ALNFALRMNFTGVAFDAVTCTTVLAFCSDHE 190

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
              FG  +H+ ++K G    + V N+++ MY R   L +A + FDEM  KDL++WN +++
Sbjct: 191 GFIFGFQLHSRILKCGLDCEVFVGNALITMYSRCCRLVEARRVFDEMRNKDLVSWNAMLS 250

Query: 289 GYEKSGSS--ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           GY + G+S  E + +F +M  E    +  +FT  I+AC        G+Q+H+  V+ G D
Sbjct: 251 GYAQEGNSGLEAILVFLEMLKEGMKLDHVSFTGAISACGHGKEFELGRQIHSLAVKIGYD 310

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            ++ + N LI  Y+KC +I D++ +F  + DR++V+WT+M+         ++A  LF+EM
Sbjct: 311 THVKVCNVLISTYSKCEDIEDAKLVFESIIDRNVVSWTTMI-----SISEEDATSLFNEM 365

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEG 434
            + GV P+ + F+ ++ A +   LV+EG
Sbjct: 366 RRDGVYPNDVTFVGLIHAITMKNLVEEG 393



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 134/232 (57%), Gaps = 3/232 (1%)

Query: 198 GLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILD 257
            L +FK+ L  G   N    ++A+   A  G    G  IHA  I  GF S++ V NS+++
Sbjct: 62  ALDLFKKQLQWGFVGNIDQVTVAIVLKACCGDSKLGCQIHAFAISSGFISHVTVPNSLMN 121

Query: 258 MYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTF 317
           MYC+      A   F+ +   D+++WNT+++G+++S   + LN   +M     + +  T 
Sbjct: 122 MYCKAGLFDRALVVFENLNNPDIVSWNTVLSGFQRS--DDALNFALRMNFTGVAFDAVTC 179

Query: 318 TSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD 377
           T+++A C+       G Q+H+ I++ GLD  + + NALI MY++C  + +++++F EM +
Sbjct: 180 TTVLAFCSDHEGFIFGFQLHSRILKCGLDCEVFVGNALITMYSRCCRLVEARRVFDEMRN 239

Query: 378 RDLVTWTSMMIGYGAHGH-GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHA 428
           +DLV+W +M+ GY   G+ G EAI +F EM+K G++ D + F   ++AC H 
Sbjct: 240 KDLVSWNAMLSGYAQEGNSGLEAILVFLEMLKEGMKLDHVSFTGAISACGHG 291



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 121/234 (51%), Gaps = 11/234 (4%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           ++ +LI  Y     + ++  +F+E+  R+++SW  +I+GY       +A   F+  +  E
Sbjct: 411 VSNSLITMYAKFESMSDSMKVFEELNYREIISWNSLISGYAQNGLWQEALQTFLSALM-E 469

Query: 108 VNPNAFTLSSVLKACKGMKSLS--NAALVHGMAIKEGLEGSIYVENSLMDVYA---TCCI 162
             PN FT  SVL +    +++S  +    H   +K GL  +  V ++L+D+YA   + C 
Sbjct: 470 SRPNEFTFGSVLSSIASAEAISMRHGQRCHSHILKLGLNTNPIVSSALLDMYAKRGSICE 529

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
           S+     VF++   KN+V+WT +I+ +A  G+    + +FK+M  EGV+ +  +F   + 
Sbjct: 530 SLG----VFSETPLKNEVAWTAIISAHARHGDYEAVMNLFKDMEREGVKPDSITFLAVIT 585

Query: 223 ACASTGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM 275
           AC   G V  G +L ++ V  H    +    +S++DM  R   L +A ++  ++
Sbjct: 586 ACGRKGMVDTGYQLFNSMVKDHLIEPSPEHYSSMVDMLGRAGRLKEAEEFVGQI 639



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 124/285 (43%), Gaps = 14/285 (4%)

Query: 262 FDCLSDANQYFDEMTEKDLITWN-TIIAGYEKSGSSECLNMFSKMKSERFSPNC--FTFT 318
           F      +Q  D+  +  + + N +++    ++ S E L++F K     F  N    T  
Sbjct: 25  FHSSKHVHQPLDQSPQTTIASLNRSMLTALRRNLSLEALDLFKKQLQWGFVGNIDQVTVA 84

Query: 319 SIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR 378
            ++ AC   + L C  Q+HA  +  G   ++ + N+L++MY K G    +  +F  +++ 
Sbjct: 85  IVLKACCGDSKLGC--QIHAFAISSGFISHVTVPNSLMNMYCKAGLFDRALVVFENLNNP 142

Query: 379 DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS-HAGLVDEGLKY 437
           D+V+W +++ G+       +A+     M  +GV  D +    VL  CS H G +  G + 
Sbjct: 143 DIVSWNTVLSGF---QRSDDALNFALRMNFTGVAFDAVTCTTVLAFCSDHEGFI-FGFQL 198

Query: 438 FKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
              +    ++    +   ++ +  R  R+ EA  +   M  K D   W  +L    +   
Sbjct: 199 HSRILKCGLDCEVFVGNALITMYSRCCRLVEARRVFDEMRNK-DLVSWNAMLSGYAQE-- 255

Query: 498 PNLGKLAALRVLD-LKPNMMGTYIILSNIYAAEGKWEEFAKFRKI 541
            N G  A L  L+ LK  M   ++  +   +A G  +EF   R+I
Sbjct: 256 GNSGLEAILVFLEMLKEGMKLDHVSFTGAISACGHGKEFELGRQI 300



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I+++ L+  Y   G I E+  +F E P ++ V+WT +I+ +     +     +F +M R 
Sbjct: 512 IVSSALLDMYAKRGSICESLGVFSETPLKNEVAWTAIISAHARHGDYEAVMNLFKDMERE 571

Query: 107 EVNPNAFTLSSVLKAC--KGM 125
            V P++ T  +V+ AC  KGM
Sbjct: 572 GVKPDSITFLAVITACGRKGM 592


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 198/566 (34%), Positives = 320/566 (56%), Gaps = 11/566 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A +LI  Y   G +E A  +F +MP RDV SW  MI+G+       +A  V   M   E
Sbjct: 184 VAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEE 243

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V  +  T+SS+L  C     +    LVH   IK GLE  ++V N+L+++Y+     + +A
Sbjct: 244 VKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFG-RLQDA 302

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           + VF+ M+ ++ VSW ++I  Y  + +    LG FKEML  G  M P   ++ V   +  
Sbjct: 303 QRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVG--MRPDLLTV-VSLASIF 359

Query: 228 GWVS---FGKLIHAAVIK-HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           G +S    G+ +H  V++      ++ + N++++MY +   +  A   F+++  +D+I+W
Sbjct: 360 GQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISW 419

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSER-FSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           NT+I GY ++G +SE ++ ++ M+  R   PN  T+ SI+ A + + AL  G ++H  ++
Sbjct: 420 NTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLI 479

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           +  L  ++ +A  LIDMY KCG + D+  +F E+     V W +++   G HGHG++A++
Sbjct: 480 KNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEKALQ 539

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLL 460
           LF +M   GV+ D I F+++L+ACSH+GLVDE    F +M  +Y + PN + YGC+VDL 
Sbjct: 540 LFKDMRADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLF 599

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520
           GRAG +++AY L+ +MP + D S+WG LL AC+ H    LG  A+ R+L++    +G Y+
Sbjct: 600 GRAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGNAELGTFASDRLLEVDSENVGYYV 659

Query: 521 ILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYG 580
           +LSNIYA  GKWE   K R + R  G +K  G S + V   V  F A ++       +Y 
Sbjct: 660 LLSNIYANVGKWEGAVKVRSLARDRGLRKTPGWSSVVVGSVVEVFYAGNQSHPQCAEIYE 719

Query: 581 VLEMLIRHMNETAYEPDIDCLIHDLE 606
            L +L   M    Y PD   ++ D+E
Sbjct: 720 ELRVLNAKMKSLGYVPDYSFVLQDVE 745



 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 131/435 (30%), Positives = 237/435 (54%), Gaps = 8/435 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR- 105
           +L T L+  Y   G +  + T F  +  +++ SW  M++ Y     +  +     E++  
Sbjct: 84  VLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVRRGRYRDSMDCVTELLSL 143

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           + V P+ +T   VLKAC    SL++   +H   +K G E  +YV  SL+ +Y+    +++
Sbjct: 144 SGVRPDFYTFPPVLKACL---SLADGEKMHCWVLKMGFEHDVYVAASLIHLYSRFG-AVE 199

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A  VF DM  ++  SW  +I+G+  +GN    L V   M  E V+M+  + S  +  CA
Sbjct: 200 VAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICA 259

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
            +  V  G L+H  VIKHG  S++ V N++++MY +F  L DA + FD M  +DL++WN+
Sbjct: 260 QSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNS 319

Query: 286 IIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR-R 343
           IIA YE++      L  F +M      P+  T  S+ +    L+    G+ VH  +VR R
Sbjct: 320 IIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCR 379

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
            L+ ++ + NAL++MYAK G+I  ++ +F ++  RD+++W +++ GY  +G   EAI+ +
Sbjct: 380 WLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAY 439

Query: 404 DEMVKS-GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           + M +   + P++  ++++L A SH G + +G+K    +    +  +  +  C++D+ G+
Sbjct: 440 NMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGK 499

Query: 463 AGRVKEAYELIKSMP 477
            GR+++A  L   +P
Sbjct: 500 CGRLEDAMSLFYEIP 514



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 167/317 (52%), Gaps = 16/317 (5%)

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
           F++  R+C +   ++  K +HA ++  G   ++ ++  ++ +Y     LS ++  F  + 
Sbjct: 54  FNLVFRSCTN---INVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQ 110

Query: 277 EKDLITWNTIIAGYEKSG----SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSC 332
            K++ +WN++++ Y + G    S +C+     +   R  P+ +TF  ++ AC +LA    
Sbjct: 111 RKNIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVR--PDFYTFPPVLKACLSLAD--- 165

Query: 333 GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA 392
           G+++H  +++ G + ++ +A +LI +Y++ G +  + K+F +M  RD+ +W +M+ G+  
Sbjct: 166 GEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQ 225

Query: 393 HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEI 452
           +G+  EA+ + D M    V+ D +   ++L  C+ +  V  G+     +  + +  +  +
Sbjct: 226 NGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFV 285

Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLP--NLGKLAALRVLD 510
              ++++  + GR+++A  +   M  + D   W  ++ A +++  P   LG    +  + 
Sbjct: 286 SNALINMYSKFGRLQDAQRVFDGMEVR-DLVSWNSIIAAYEQNDDPVTALGFFKEMLFVG 344

Query: 511 LKPNMMGTYIILSNIYA 527
           ++P+++ T + L++I+ 
Sbjct: 345 MRPDLL-TVVSLASIFG 360



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 120/254 (47%), Gaps = 4/254 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++   L+  Y   G I+ AR +F+++P RDV+SW  +I GY      ++A   +  M   
Sbjct: 386 VIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEG 445

Query: 107 E-VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             + PN  T  S+L A   + +L     +HG  IK  L   ++V   L+D+Y  C   ++
Sbjct: 446 RTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCG-RLE 504

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +A  +F ++  +  V W  +I+     G+G   L +FK+M  +GV+ +  +F   + AC+
Sbjct: 505 DAMSLFYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACS 564

Query: 226 STGWVSFGKLIHAAVIK-HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLITW 283
            +G V   +     + K +    NL     ++D++ R   L  A      M  + D   W
Sbjct: 565 HSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIW 624

Query: 284 NTIIAGYEKSGSSE 297
            T++A     G++E
Sbjct: 625 GTLLAACRIHGNAE 638


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 184/554 (33%), Positives = 319/554 (57%), Gaps = 13/554 (2%)

Query: 67  TLFDEMPER-DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGM 125
           TLF+   ++ DV SW  +IA         +A   F  M +  + P   +    +KAC  +
Sbjct: 30  TLFNRYVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSL 89

Query: 126 KSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTL 185
             + +    H  A   G +  I+V ++L+ +Y+TC   +++AR VF+++  +N VSWT++
Sbjct: 90  LDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCG-KLEDARKVFDEIPKRNIVSWTSM 148

Query: 186 ITGYAHSGNGYGGLGVFKEMLLEGVE------MNPYSFSIAVRACASTGWVSFGKLIHAA 239
           I GY  +GN    + +FK++L+E  +      ++       + AC+        + IH+ 
Sbjct: 149 IRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSF 208

Query: 240 VIKHGFGSNLPVMNSILDMYCR--FDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SS 296
           VIK GF   + V N++LD Y +     ++ A + FD++ +KD +++N+I++ Y +SG S+
Sbjct: 209 VIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSN 268

Query: 297 ECLNMFSKMKSERF-SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
           E  ++F ++  E+  + NC T ++++ A +   AL  G+ +H  ++R GL+ ++ +  ++
Sbjct: 269 EAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSI 328

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           IDMY KCG +  ++  F  M ++++ +WT+M+ GYG HGH  +A+ELF  M+ SGVRP+ 
Sbjct: 329 IDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNY 388

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
           I F++VL ACSHAGL D G  +F +M   + V P  E YGC+VDLLGRAG +++AY+LI+
Sbjct: 389 ITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQ 448

Query: 475 SMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEE 534
            M  +PD  +W  LL AC+ H+   L +++  R+ +L P+  G Y++LS+IYA  G+W++
Sbjct: 449 KMKMEPDSIIWSSLLAACRIHKNVELAEISVARLFELDPSNCGYYMLLSHIYADSGRWKD 508

Query: 535 FAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAY 594
             + R  M+  G  K  G S +E+  +V  F+  D+     + +Y  L  L R + E  Y
Sbjct: 509 VERVRMTMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGY 568

Query: 595 EPDIDCLIHDLEGE 608
             +   + HD++ E
Sbjct: 569 VSNTSSVCHDVDEE 582



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/357 (29%), Positives = 181/357 (50%), Gaps = 11/357 (3%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +++ LI  Y   G +E+AR +FDE+P+R++VSWT MI GY        A ++F +++  E
Sbjct: 113 VSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLIEE 172

Query: 108 VNPNA------FTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
            + +A        + SV+ AC  + +      +H   IK G +  + V N+L+D YA   
Sbjct: 173 NDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGG 232

Query: 162 I-SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG-VEMNPYSFSI 219
              +  AR +F+ +  K+ VS+ ++++ YA SG       VF+ ++ E  V  N  + S 
Sbjct: 233 EGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLST 292

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
            + A + +G +  GK IH  VI+ G   ++ V  SI+DMYC+   +  A   FD M  K+
Sbjct: 293 VLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNKN 352

Query: 280 LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG-QQVH 337
           + +W  +IAGY   G +++ L +F  M      PN  TF S++AAC+       G    +
Sbjct: 353 VRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHDVGWHWFN 412

Query: 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAH 393
           A   R G++  L     ++D+  + G +  +  +  +M  + D + W+S++     H
Sbjct: 413 AMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQKMKMEPDSIIWSSLLAACRIH 469



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 42/76 (55%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I+ T++I  Y   G +E AR  FD M  ++V SWT MIAGY       +A  +F  M+ +
Sbjct: 323 IVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDS 382

Query: 107 EVNPNAFTLSSVLKAC 122
            V PN  T  SVL AC
Sbjct: 383 GVRPNYITFVSVLAAC 398


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  350 bits (899), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 195/570 (34%), Positives = 321/570 (56%), Gaps = 15/570 (2%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +++T L  +Y   G + +A+ +FD   ERDVVSW  M+  Y      ++A  +F  M+  
Sbjct: 261 VVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHE 320

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            ++P+  TL   + A  G  SL    ++HG A+++GL+  I + N+L+D+Y T C S + 
Sbjct: 321 GISPSKVTL---VNASTGCSSLRFGRMIHGCALEKGLDRDIVLGNALLDMY-TRCGSPEE 376

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR +F  +   N VSW T+I G +  G     + +F+ M LEG+     ++   + A AS
Sbjct: 377 ARHLFKRIPC-NAVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVAS 435

Query: 227 ----TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE--MTEK-D 279
                  ++ G+ +H+ ++  G+ S   +  +++ MY     + +A   F    M ++ D
Sbjct: 436 NPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHD 495

Query: 280 LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           +++WN II+   + G     L  F +M     +PN  T  +++ ACA  AAL+ G+ VH 
Sbjct: 496 VVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGEIVHD 555

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGK 397
            +   G++ NL +A AL  MY +CG++  +++IF +++ +RD+V + +M+  Y  +G   
Sbjct: 556 HLRHSGMESNLFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAG 615

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCV 456
           EA++LF  M + G RPD   F++VL+ACSH GL DEG + F+SM   Y + P+++ Y C 
Sbjct: 616 EALKLFWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACA 675

Query: 457 VDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMM 516
           VD+LGRAG + +A ELI+ M  KP   VW  LLGAC+++R  + G+LA   V +L P   
Sbjct: 676 VDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDE 735

Query: 517 GTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQ 576
             Y++LSNI A  GKW+E A+ R  M   G +KE G SWIE++ +V  F+A D+    ++
Sbjct: 736 SAYVVLSNILAGAGKWDEAAEVRTEMESRGLRKEAGKSWIEIKSRVHEFVAGDRSHPRSE 795

Query: 577 YVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
            +Y  LE L   + E  Y PD   ++  ++
Sbjct: 796 EIYRELERLHAEIREIGYVPDTRLVLRKVD 825



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 138/488 (28%), Positives = 231/488 (47%), Gaps = 26/488 (5%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L  +L++ Y     + +   +F  +  RD  SWT +I  YT      +A  +F  M +  
Sbjct: 64  LGNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEG 123

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDN 166
           V  +A T  +VLKAC  +  LS    +H   ++ GL+G   + N L+ +Y +C C++  +
Sbjct: 124 VRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLKGKSVLANLLLHIYGSCGCVA--S 181

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A L+F  M+ ++ VSW   I   A SG+    L +F+ M LEGV     +  IA+  CA+
Sbjct: 182 AMLLFEKME-RDLVSWNAAIAANAQSGDLGIALELFQRMQLEGVRPARITLVIALTVCAT 240

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +   + IH  V + G    L V  ++   Y R   L  A + FD   E+D+++WN +
Sbjct: 241 ---IRQAQAIHFIVRESGLEQTLVVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAM 297

Query: 287 IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           +  Y + G  SE   +F++M  E  SP+  T  +    C++   L  G+ +H   + +GL
Sbjct: 298 LGAYAQHGHMSEAALLFARMLHEGISPSKVTLVNASTGCSS---LRFGRMIHGCALEKGL 354

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           D ++ L NAL+DMY +CG+  +++ +F  +   + V+W +M+ G    G  K A+ELF  
Sbjct: 355 DRDIVLGNALLDMYTRCGSPEEARHLFKRIPC-NAVSWNTMIAGSSQKGQMKRAVELFQR 413

Query: 406 MVKSGVRPDRIVFMAVLTACS----HAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461
           M   G+ P R  ++ +L A +     A  + EG K    +          I   VV +  
Sbjct: 414 MQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYA 473

Query: 462 RAGRVKEAYELIK--SMPFKPDESVWGPLLGACKEHRLPNLGK--LAALRVLDLK---PN 514
             G + EA    +  +M  + D   W  ++ +  +H     GK  L   R +DL    PN
Sbjct: 474 SCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQH---GHGKRALGFFRRMDLHGVAPN 530

Query: 515 MMGTYIIL 522
            +    +L
Sbjct: 531 QITCVAVL 538



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 131/457 (28%), Positives = 223/457 (48%), Gaps = 17/457 (3%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           KG S+LA  L+  Y   G +  A  LF++M ERD+VSW   IA          A  +F  
Sbjct: 160 KGKSVLANLLLHIYGSCGCVASAMLLFEKM-ERDLVSWNAAIAANAQSGDLGIALELFQR 218

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M    V P   TL   L  C    ++  A  +H +  + GLE ++ V  +L   YA    
Sbjct: 219 MQLEGVRPARITLVIALTVC---ATIRQAQAIHFIVRESGLEQTLVVSTALASAYARLG- 274

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            +  A+ VF+    ++ VSW  ++  YA  G+      +F  ML EG+  +  +   A  
Sbjct: 275 HLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVTLVNAST 334

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
            C+S   + FG++IH   ++ G   ++ + N++LDMY R     +A   F  +   + ++
Sbjct: 335 GCSS---LRFGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFKRIP-CNAVS 390

Query: 283 WNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACAT----LAALSCGQQVH 337
           WNT+IAG  + G     + +F +M+ E  +P   T+ +++ A A+      A++ G+++H
Sbjct: 391 WNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLH 450

Query: 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSE--MSDR-DLVTWTSMMIGYGAHG 394
           + IV  G     A+  A++ MYA CG I ++   F    M DR D+V+W +++     HG
Sbjct: 451 SRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHG 510

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG 454
           HGK A+  F  M   GV P++I  +AVL AC+ A  + EG      +    +  N  +  
Sbjct: 511 HGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGEIVHDHLRHSGMESNLFVAT 570

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
            +  + GR G ++ A E+ + +  + D  ++  ++ A
Sbjct: 571 ALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAA 607



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 109/366 (29%), Positives = 184/366 (50%), Gaps = 15/366 (4%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM 174
           L  +L+A    + LS    +H   +  GLE  +   N L+ +Y  C  S+ +   VF+ +
Sbjct: 32  LVRLLRAAGDDRLLSQGRRIHARIVSLGLEEEL--GNHLLRLYLKC-ESLGDVEEVFSRL 88

Query: 175 KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGK 234
           + +++ SWTT+IT Y   G     +G+F  M  EGV  +  +F   ++ACA  G +S G+
Sbjct: 89  EVRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGR 148

Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG 294
            IHA +++ G      + N +L +Y    C++ A   F++M E+DL++WN  IA   +SG
Sbjct: 149 SIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKM-ERDLVSWNAAIAANAQSG 207

Query: 295 S-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353
                L +F +M+ E   P   T    +  CAT+      Q +H  +   GL+  L ++ 
Sbjct: 208 DLGIALELFQRMQLEGVRPARITLVIALTVCATIRQ---AQAIHFIVRESGLEQTLVVST 264

Query: 354 ALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP 413
           AL   YA+ G++  ++++F   ++RD+V+W +M+  Y  HGH  EA  LF  M+  G+ P
Sbjct: 265 ALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISP 324

Query: 414 DRIVFMAVLTACS--HAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471
            ++  +   T CS    G +  G    K ++   V  N      ++D+  R G  +EA  
Sbjct: 325 SKVTLVNASTGCSSLRFGRMIHGCALEKGLDRDIVLGN-----ALLDMYTRCGSPEEARH 379

Query: 472 LIKSMP 477
           L K +P
Sbjct: 380 LFKRIP 385


>gi|115466810|ref|NP_001057004.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|55773755|dbj|BAD72438.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595044|dbj|BAF18918.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|125596287|gb|EAZ36067.1| hypothetical protein OsJ_20377 [Oryza sativa Japonica Group]
          Length = 673

 Score =  350 bits (899), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 172/508 (33%), Positives = 299/508 (58%), Gaps = 3/508 (0%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
           +L+  Y   G +E AR +FD +PER+VVSWT M++G        +   +F EM ++ V+P
Sbjct: 162 SLVDMYAKAGDLENARKVFDRVPERNVVSWTSMLSGSIQNGIAEEGLVLFNEMRQDNVHP 221

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           + +T+ SVL AC  +  L     +HG  IK GL  + ++  SL+D+YA C   +++AR V
Sbjct: 222 SEYTMVSVLAACAMLGGLHQGRWIHGSVIKYGLSTNSFISASLLDMYAKC-EKVEDARRV 280

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F+++++ + V WT +I GY  +      L +F       +  N  + +  + A A    +
Sbjct: 281 FDELEFVDIVLWTAMIVGYTQNKRPLDALQLFLHKKFVSIVPNSVTIATVISASAQLRHL 340

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
             G+ +HA  +K G   +  V N+++DMY +   L +AN  F  +  KD++ WN+++AGY
Sbjct: 341 PLGRSVHAIGVKLGTMESDVVRNALVDMYAKCQALPEANSIFGRILIKDVVAWNSMMAGY 400

Query: 291 EKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
            ++G ++E L +F++M+ +  SP+  +  + ++AC  LA L  G+  H   ++     N+
Sbjct: 401 SENGMANESLVLFNRMRMQGISPDAISVVNALSACVCLADLHIGKGFHTYAIKYAFMSNI 460

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
            +  AL+++Y+KC ++  +Q++F++M+DR+ VTW++M+ GYG  G    +I+LF+EM+K 
Sbjct: 461 YVNTALLNLYSKCADLPSAQRVFNDMTDRNSVTWSAMIGGYGMQGDSAGSIDLFNEMLKE 520

Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKE 468
            + P+ +VF ++L+ACSH G+V  G +YF SM   +N+ P+ + Y C+VD++ RAG ++E
Sbjct: 521 NIHPNEVVFTSILSACSHTGMVTAGKEYFDSMARHFNITPSMKHYACMVDVMARAGNLEE 580

Query: 469 AYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA 528
           A E I++MP K   SVWG  L  CK H     G+ A  ++  L P     Y+++SN+Y +
Sbjct: 581 ALEFIQNMPIKAGISVWGSFLHGCKLHSRLEFGEEAIKKMAALHPETPDFYVLMSNLYTS 640

Query: 529 EGKWEEFAKFRKIMRGMGSKKEVGMSWI 556
            G+W++    R+ M+  G  K  G S +
Sbjct: 641 YGRWDKSQTIRRWMQEQGLVKLPGCSSV 668



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 108/383 (28%), Positives = 198/383 (51%), Gaps = 9/383 (2%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S ++ +L+  Y     +E+AR +FDE+   D+V WT MI GYT       A  +F+    
Sbjct: 258 SFISASLLDMYAKCEKVEDARRVFDELEFVDIVLWTAMIVGYTQNKRPLDALQLFLHKKF 317

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             + PN+ T+++V+ A   ++ L     VH + +K G   S  V N+L+D+YA  C ++ 
Sbjct: 318 VSIVPNSVTIATVISASAQLRHLPLGRSVHAIGVKLGTMESDVVRNALVDMYAK-CQALP 376

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A  +F  +  K+ V+W +++ GY+ +G     L +F  M ++G+  +  S   A+ AC 
Sbjct: 377 EANSIFGRILIKDVVAWNSMMAGYSENGMANESLVLFNRMRMQGISPDAISVVNALSACV 436

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               +  GK  H   IK+ F SN+ V  ++L++Y +   L  A + F++MT+++ +TW+ 
Sbjct: 437 CLADLHIGKGFHTYAIKYAFMSNIYVNTALLNLYSKCADLPSAQRVFNDMTDRNSVTWSA 496

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR- 343
           +I GY   G S+  +++F++M  E   PN   FTSI++AC+    ++ G++    + R  
Sbjct: 497 MIGGYGMQGDSAGSIDLFNEMLKENIHPNEVVFTSILSACSHTGMVTAGKEYFDSMARHF 556

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHGH---GKEA 399
            +  ++     ++D+ A+ GN+ ++ +    M  +  +  W S + G   H     G+EA
Sbjct: 557 NITPSMKHYACMVDVMARAGNLEEALEFIQNMPIKAGISVWGSFLHGCKLHSRLEFGEEA 616

Query: 400 IELFDEMVKSGVRPDRIVFMAVL 422
           I+    +      PD  V M+ L
Sbjct: 617 IKKMAALHPE--TPDFYVLMSNL 637



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 102/440 (23%), Positives = 213/440 (48%), Gaps = 15/440 (3%)

Query: 102 EMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
            + R     +A  L  +L AC  ++SL  A     + +  GL   I     L+  YA   
Sbjct: 11  HLARASAPRDASALVLLLPACGTLRSL-RALHGRLLLLTSGLLRGIRARTKLLSCYAALG 69

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE--GVEMNPYSFSI 219
             + +AR V +     +  ++  ++     +G+    + + ++M              S+
Sbjct: 70  -DLASARGVLDGTPRPDAYAYRVMLGWLVDAGSHADAVALHRDMRRRCPAAAQADVVLSL 128

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
           A++AC  +    +G+ +H  V+K G G++  VMNS++DMY +   L +A + FD + E++
Sbjct: 129 ALKACVRSADFRYGRRLHCDVVKAG-GADGFVMNSLVDMYAKAGDLENARKVFDRVPERN 187

Query: 280 LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           +++W ++++G  ++G + E L +F++M+ +   P+ +T  S++AACA L  L  G+ +H 
Sbjct: 188 VVSWTSMLSGSIQNGIAEEGLVLFNEMRQDNVHPSEYTMVSVLAACAMLGGLHQGRWIHG 247

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
            +++ GL  N  ++ +L+DMYAKC  + D++++F E+   D+V WT+M++GY  +    +
Sbjct: 248 SVIKYGLSTNSFISASLLDMYAKCEKVEDARRVFDELEFVDIVLWTAMIVGYTQNKRPLD 307

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVD 458
           A++LF       + P+ +    V++A +    +  G              +  +   +VD
Sbjct: 308 ALQLFLHKKFVSIVPNSVTIATVISASAQLRHLPLGRSVHAIGVKLGTMESDVVRNALVD 367

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKP--- 513
           +  +   + EA  +   +  K D   W  ++    E+ + N  L     +R+  + P   
Sbjct: 368 MYAKCQALPEANSIFGRILIK-DVVAWNSMMAGYSENGMANESLVLFNRMRMQGISPDAI 426

Query: 514 ---NMMGTYIILSNIYAAEG 530
              N +   + L++++  +G
Sbjct: 427 SVVNALSACVCLADLHIGKG 446


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  350 bits (899), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 195/578 (33%), Positives = 317/578 (54%), Gaps = 34/578 (5%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           A ++F+ + E +++ W  M  G+   +    A  ++V M+   + PN++T   +LK+C  
Sbjct: 56  AISVFETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAK 115

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA-----------------------TCC 161
           +K       +HG  +K G E  +YV  SL+ +Y                        T  
Sbjct: 116 LKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTAL 175

Query: 162 IS-------MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP 214
           I+       +++A+ +F+++  K+ VSW  +I+GYA +GN    L +FKEM+   V+ + 
Sbjct: 176 ITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDE 235

Query: 215 YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE 274
            +    V ACA +G +  G+ +H+ +  HG GSNL ++N+++D+Y +   +  A   F  
Sbjct: 236 STMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQG 295

Query: 275 MTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG 333
           ++ KD+I+WNT+I GY       E L +F +M     +PN  T  SI+ ACA L A+  G
Sbjct: 296 LSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFG 355

Query: 334 QQVHAGIVRR--GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG 391
           + +H  I +R  G+    +L  +LIDMYAKCG+I  + ++F+ M  R L    +M+ G+ 
Sbjct: 356 RWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFA 415

Query: 392 AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNK 450
            HG    A ++F  M K+G+ PD I F+ +L+ACSH+G++D G + F+SM  +Y + P  
Sbjct: 416 MHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKL 475

Query: 451 EIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD 510
           E YGC++DLLG  G  KEA E+I +M  +PD  +W  LL ACK H    LG+  A +++ 
Sbjct: 476 EHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKLIK 535

Query: 511 LKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDK 570
           ++P   G+Y++LSNIYA  G+W E A  R ++   G KK  G S IE+   V  FI  DK
Sbjct: 536 IEPENPGSYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDK 595

Query: 571 MGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
                + +YG+LE +   + E  + PD   ++ ++E E
Sbjct: 596 FHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEE 633



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 113/412 (27%), Positives = 203/412 (49%), Gaps = 12/412 (2%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T LI  Y   G IE A+ +FDE+P +DVVSW  +I+GY     + +A  +F EM++  V 
Sbjct: 173 TALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVK 232

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P+  T+ +V+ AC    S+     VH      GL  ++ + N+L+D+Y+ C   ++ A  
Sbjct: 233 PDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCG-EVETACG 291

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           +F  +  K+ +SW T+I GY H       L +F+EML  G   N  +    + ACA  G 
Sbjct: 292 LFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGA 351

Query: 230 VSFGKLIHAAVIKH--GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
           + FG+ IH  + K   G  +   +  S++DMY +   +  A+Q F+ M  + L   N +I
Sbjct: 352 IDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMI 411

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-GL 345
            G+   G ++   ++FS+M+     P+  TF  +++AC+    L  G+++   + +   +
Sbjct: 412 FGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKI 471

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEAIELFD 404
              L     +ID+    G   +++++ + M+ + D V W S++     HG+ +       
Sbjct: 472 TPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQ 531

Query: 405 EMVK-SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455
           +++K     P   V ++ + A   AG  +E       +ND  +   K++ GC
Sbjct: 532 KLIKIEPENPGSYVLLSNIYAT--AGRWNEVANIRALLNDKGM---KKVPGC 578



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 146/294 (49%), Gaps = 38/294 (12%)

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYC----RFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           ++IHA +IK G  +    ++ +L+ +C     FD L  A   F+ + E +L+ WNT+  G
Sbjct: 19  RIIHAQMIKTGLHNTNYALSRLLE-FCILSPNFDGLPYAISVFETIQEPNLLIWNTMFRG 77

Query: 290 YEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           +  S      + ++  M S    PN +TF  ++ +CA L     GQQ+H  +++ G + +
Sbjct: 78  HALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELD 137

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH------------- 395
           L +  +LI MY K G   D+ K+F   S RD+V++T+++ GY + G+             
Sbjct: 138 LYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMFDEIPV 197

Query: 396 ------------------GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY 437
                              KEA++LF EM+K+ V+PD    + V++AC+ +G +  G + 
Sbjct: 198 KDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQV 257

Query: 438 FKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
              ++D+ +  N +I   ++DL  + G V+ A  L + +  K D   W  ++G 
Sbjct: 258 HSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNK-DVISWNTMIGG 310


>gi|449471512|ref|XP_004153331.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 607

 Score =  350 bits (899), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 197/564 (34%), Positives = 322/564 (57%), Gaps = 10/564 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQA-WTVFVEMVR 105
           ++AT L + Y +    E A  LFD+   +D+  W   +      N + +  + VF  M+ 
Sbjct: 46  VVATALAEMYEECIEFENAHQLFDKRSVKDL-GWPSSLTTEGPQNDNGEGIFRVFGRMIA 104

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
            ++ P++FT  ++L+   G+ S+  A +VH +AI   L G + V  +++ +Y+    S+ 
Sbjct: 105 EQLVPDSFTFFNLLRFIAGLNSIQLAKIVHCIAIVSKLSGDLLVNTAVLSLYSKL-RSLV 163

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +AR +F+ M  K+ V W  +I  YA  G     L +FK M   G+  + ++    + + A
Sbjct: 164 DARKLFDKMPEKDRVVWNIMIAAYAREGKPTECLELFKSMARSGIRSDLFTALPVISSIA 223

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               V +GK  HA ++++G  S + V NS++DMYC    L  A + F+ MT+K +I+W+ 
Sbjct: 224 QLKCVDWGKQTHAHILRNGSDSQVSVHNSLIDMYCECKILDSACKIFNWMTDKSVISWSA 283

Query: 286 IIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I GY K+G S   L++FSKMKS+    +     +I+ A   + AL   + +H   ++ G
Sbjct: 284 MIKGYVKNGQSLTALSLFSKMKSDGIQADFVIMINILPAFVHIGALENVKYLHGYSMKLG 343

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSE--MSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
           L    +L  AL+  YAKCG+I  +Q++F E  + D+DL+ W SM+  +  HG   +  +L
Sbjct: 344 LTSLPSLNTALLITYAKCGSIEMAQRLFEEEKIDDKDLIMWNSMISAHANHGDWSQCFKL 403

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLG 461
           ++ M  S  +PD++ F+ +LTAC ++GLV++G ++FK M + Y   P++E Y C+V+LLG
Sbjct: 404 YNRMKCSNSKPDQVTFLGLLTACVNSGLVEKGKEFFKEMTESYGCQPSQEHYACMVNLLG 463

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           RAG + EA EL+K+MP KPD  VWGPLL ACK H    L + AA ++++++P   G YI+
Sbjct: 464 RAGLISEAGELVKNMPIKPDARVWGPLLSACKMHPGSKLAEFAAEKLINMEPRNAGNYIL 523

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVY-- 579
           LSNIYAA GKW+  AK R  +R  G KK  G SW+E+   V  F   D+       +Y  
Sbjct: 524 LSNIYAAAGKWDGVAKMRSFLRNKGLKKIPGCSWLEINGHVTEFRVADQTHPRAGDIYTI 583

Query: 580 -GVLEMLIRHMNETAYEPDIDCLI 602
            G LE+ I+ + E + +  ++ L+
Sbjct: 584 LGNLELEIKEVREKSPDTLVNPLL 607



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 179/338 (52%), Gaps = 5/338 (1%)

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           MV   ++P+  T   VL++C    ++     +HG  +K G +    V  +L ++Y   CI
Sbjct: 1   MVAKSMHPDEETYPFVLRSCSSFSNVGFGRTIHGYLVKLGFDLFDVVATALAEMYEE-CI 59

Query: 163 SMDNARLVFNDMKWKNDVSW-TTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
             +NA  +F D +   D+ W ++L T    + NG G   VF  M+ E +  + ++F   +
Sbjct: 60  EFENAHQLF-DKRSVKDLGWPSSLTTEGPQNDNGEGIFRVFGRMIAEQLVPDSFTFFNLL 118

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
           R  A    +   K++H   I      +L V  ++L +Y +   L DA + FD+M EKD +
Sbjct: 119 RFIAGLNSIQLAKIVHCIAIVSKLSGDLLVNTAVLSLYSKLRSLVDARKLFDKMPEKDRV 178

Query: 282 TWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
            WN +IA Y + G  +ECL +F  M       + FT   +I++ A L  +  G+Q HA I
Sbjct: 179 VWNIMIAAYAREGKPTECLELFKSMARSGIRSDLFTALPVISSIAQLKCVDWGKQTHAHI 238

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           +R G D  +++ N+LIDMY +C  +  + KIF+ M+D+ +++W++M+ GY  +G    A+
Sbjct: 239 LRNGSDSQVSVHNSLIDMYCECKILDSACKIFNWMTDKSVISWSAMIKGYVKNGQSLTAL 298

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYF 438
            LF +M   G++ D ++ + +L A  H G + E +KY 
Sbjct: 299 SLFSKMKSDGIQADFVIMINILPAFVHIGAL-ENVKYL 335



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 15/194 (7%)

Query: 305 MKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGN 364
           M ++   P+  T+  ++ +C++ + +  G+ +H  +V+ G D    +A AL +MY +C  
Sbjct: 1   MVAKSMHPDEETYPFVLRSCSSFSNVGFGRTIHGYLVKLGFDLFDVVATALAEMYEECIE 60

Query: 365 ISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI-ELFDEMVKSGVRPDRIV------ 417
             ++ ++F + S +DL  W S +   G      E I  +F  M+   + PD         
Sbjct: 61  FENAHQLFDKRSVKDL-GWPSSLTTEGPQNDNGEGIFRVFGRMIAEQLVPDSFTFFNLLR 119

Query: 418 FMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMP 477
           F+A L +   A +V       K   D  VN        V+ L  +   + +A +L   MP
Sbjct: 120 FIAGLNSIQLAKIVHCIAIVSKLSGDLLVNT------AVLSLYSKLRSLVDARKLFDKMP 173

Query: 478 FKPDESVWGPLLGA 491
            K D  VW  ++ A
Sbjct: 174 EK-DRVVWNIMIAA 186


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 185/493 (37%), Positives = 291/493 (59%), Gaps = 8/493 (1%)

Query: 124 GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS---MDNARLVFNDM-KWKND 179
           G+ SL+    +H  +I+ G+  S       +  Y     S   M  A  VF+ + K  N 
Sbjct: 26  GVSSLTKLRQIHAFSIRNGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINV 85

Query: 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEG-VEMNPYSFSIAVRACASTGWVSFGKLIHA 238
             W TLI GYA  GN    + +++EM   G VE + +++   ++A      V  G+ IH+
Sbjct: 86  FIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETIHS 145

Query: 239 AVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SE 297
            VI+ GFGS + V NS+L +Y     ++ A + FD+M EKDL+ WN++I G+ ++G   E
Sbjct: 146 VVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEE 205

Query: 298 CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALID 357
            L ++++M  +   P+ FT  S+++ACA + AL+ G++ H  +++ GL  NL  +N L+D
Sbjct: 206 ALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLD 265

Query: 358 MYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM-VKSGVRPDRI 416
           +YA+CG + +++ +F EM D++ V+WTS+++G   +G GKEAIELF  M  K G+ P  I
Sbjct: 266 LYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEI 325

Query: 417 VFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKS 475
            F+ +L ACSH G+V EG +YF+ M++ Y + P  E +GC+VDLL RAG+VK+AYE I  
Sbjct: 326 TFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILK 385

Query: 476 MPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEF 535
           MP +P+  +W  LLGAC  H   +L +LA +++L L+PN  G Y++LSN+YA+E +W + 
Sbjct: 386 MPMQPNVVIWRTLLGACTVHGDSDLAELARMKILQLEPNHSGDYVLLSNMYASEQRWSDV 445

Query: 536 AKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYE 595
            K RK M   G +K  G S +EV ++V  F+  DK       +Y  L+ +   +    Y 
Sbjct: 446 QKIRKQMLRDGVRKVPGHSLVEVGNRVHEFLMGDKSHPQNDMIYAKLKEMTDRLRLEGYV 505

Query: 596 PDIDCLIHDLEGE 608
           P I  +  D+E E
Sbjct: 506 PQISNVYVDVEEE 518



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 162/335 (48%), Gaps = 28/335 (8%)

Query: 76  DVVSWTVMIAGYTSFNCHNQAWTVFVEM-VRNEVNPNAFTLSSVLKACKGMKSLSNAALV 134
           +V  W  +I GY        A +++ EM     V P+  T   +LKA   M  +     +
Sbjct: 84  NVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETI 143

Query: 135 HGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGN 194
           H + I+ G    IYV+NSL+ +YA C   + +A  VF+ M  K+ V+W ++I G+A +G 
Sbjct: 144 HSVVIRSGFGSLIYVQNSLLHLYANCG-DVASAYKVFDKMPEKDLVAWNSVINGFAENGK 202

Query: 195 GYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNS 254
               L ++ EM L+G++ + ++    + ACA  G ++ GK  H  +IK G   NL   N 
Sbjct: 203 PEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNV 262

Query: 255 ILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKS-ERFSP 312
           +LD+Y R   + +A   FDEM +K+ ++W ++I G   +G   E + +F  M+S E   P
Sbjct: 263 LLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLP 322

Query: 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRG------------LDGNLALANALIDMYA 360
              TF  I+ AC+           H G+V+ G            ++  +     ++D+ A
Sbjct: 323 CEITFVGILYACS-----------HCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLA 371

Query: 361 KCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHG 394
           + G +  + +   +M    ++V W +++     HG
Sbjct: 372 RAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHG 406



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 137/269 (50%), Gaps = 5/269 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +  +L+  Y + G +  A  +FD+MPE+D+V+W  +I G+       +A  ++ EM    
Sbjct: 158 VQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMDLKG 217

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + P+ FT+ S+L AC  + +L+     H   IK GL  +++  N L+D+YA C   ++ A
Sbjct: 218 IKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCG-RVEEA 276

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEM-LLEGVEMNPYSFSIAVRACAS 226
           + +F++M  KN VSWT+LI G A +G G   + +FK M   EG+     +F   + AC+ 
Sbjct: 277 KTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACSH 336

Query: 227 TGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLITWN 284
            G V  G +       ++     +     ++D+  R   +  A +Y  +M  + +++ W 
Sbjct: 337 CGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQPNVVIWR 396

Query: 285 TIIAGYEKSGSSECLNMFSKMKSERFSPN 313
           T++      G S+ L   ++MK  +  PN
Sbjct: 397 TLLGACTVHGDSD-LAELARMKILQLEPN 424


>gi|449476598|ref|XP_004154781.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Cucumis sativus]
          Length = 709

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 194/512 (37%), Positives = 292/512 (57%), Gaps = 33/512 (6%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
           +L+  Y + G +  AR +F+ M +R VVSW  MI+G+       +A  VF  M+   V P
Sbjct: 224 SLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVFNSMMDARVEP 283

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           ++ T+ S L +C  +K L     VH +  K  L+  I V N+L+D+Y+ C   +D A LV
Sbjct: 284 DSATIVSALPSCGYLKELELGIKVHKLVQKNHLQEKIEVRNALVDMYSRCG-GIDEASLV 342

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F + K K+ ++WT++I GY  +GN    L +   M L+GV  N  + +  + ACAS  + 
Sbjct: 343 FAETKEKDVITWTSMINGYIMNGNAKSALALCPAMQLDGVVPNAVTLASLLSACASLCY- 401

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
                                      MY + + +S + Q F + ++K  + WN +++G 
Sbjct: 402 ---------------------------MYAKCNAVSYSFQVFAKTSKKRTVPWNALLSGL 434

Query: 291 -EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
                + E + +F  M  E    N  TF S+I A A LA L     +H+ +VR G    +
Sbjct: 435 IHNELAREAVGLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNLHSYLVRSGFISKI 494

Query: 350 ALANALIDMYAKCGNISDSQKIFSEM--SDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           A+   LIDMY+KCG++  + KIF E+   ++D++ W+ ++ GYG HGHG+ A+ LF++MV
Sbjct: 495 AVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGETAVLLFNQMV 554

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRV 466
            SG++P+ I F +VL ACSH GLVD+GL  FK M  +Y  +P    Y CVVDLLGRAGR+
Sbjct: 555 HSGMQPNEITFTSVLHACSHRGLVDDGLTLFKYMIENYPSSPLPNHYTCVVDLLGRAGRL 614

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            EAY+LIKSMPF+ + S+WG LLGAC  H+   LG++AA R+ +L+P   G YI+L+NIY
Sbjct: 615 DEAYDLIKSMPFQQNHSIWGALLGACLIHQNVELGEVAAERLFELEPESTGNYILLANIY 674

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEV 558
           AA G+W++    R IM  +G +K    S + V
Sbjct: 675 AAVGRWKDAENVRHIMSKIGLRKTPAQSSVGV 706



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 117/387 (30%), Positives = 196/387 (50%), Gaps = 21/387 (5%)

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGS---IYVENSLMDVYATC-CISMDN 166
           N     S+L+     +SL+   ++HG  I  GL  S   I++ + L   YA C C+ +  
Sbjct: 78  NVHRCDSLLRHYAATRSLNKTKILHGHTITSGLLHSPNFIHLPSHLAVSYAFCGCVPL-- 135

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG-VEMNPYSFSIAVRACA 225
           AR +F+D+   +   W  +I  Y   G  +  L VF  M+  G    + Y+F + ++AC+
Sbjct: 136 ARKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKFWPDKYTFPLVIKACS 195

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               ++ G LIH   +  GF SN+ V NS+L MY     +  A Q F+ M ++ +++WNT
Sbjct: 196 VMSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNT 255

Query: 286 IIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I+G+ ++G   E L +F+ M   R  P+  T  S + +C  L  L  G +VH  + +  
Sbjct: 256 MISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGYLKELELGIKVHKLVQKNH 315

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           L   + + NAL+DMY++CG I ++  +F+E  ++D++TWTSM+ GY  +G+ K A+ L  
Sbjct: 316 LQEKIEVRNALVDMYSRCGGIDEASLVFAETKEKDVITWTSMINGYIMNGNAKSALALCP 375

Query: 405 EMVKSGVRPDRIVFMAVLTAC-------SHAGLVDEGLKYFKSMNDYNVNP-NKEIYGCV 456
            M   GV P+ +   ++L+AC       +    V    + F   +     P N  + G +
Sbjct: 376 AMQLDGVVPNAVTLASLLSACASLCYMYAKCNAVSYSFQVFAKTSKKRTVPWNALLSGLI 435

Query: 457 VDLLGRAGRVKEAYELIKSMPFKPDES 483
            + L R     EA  L KSM  +  E+
Sbjct: 436 HNELAR-----EAVGLFKSMLIEEVEA 457


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 194/563 (34%), Positives = 316/563 (56%), Gaps = 7/563 (1%)

Query: 48   LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
            +   L+  Y     I+ A ++F  MP +D VSW  MI+G        +A + F  M RN 
Sbjct: 493  IGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNG 552

Query: 108  VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
            + P+ F++ S L +C  +  L+    +HG   K GL+  + V N+L+ +YA    S++  
Sbjct: 553  MVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAET-DSINEC 611

Query: 168  RLVFNDMKWKNDVSWTTLITGYA-HSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
            + VF  M   + VSW + I   A +  +    L  F EM+  G   N  +F   + A +S
Sbjct: 612  QKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSS 671

Query: 227  TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLITWNT 285
               +  G  IHA ++K+    +  + N++L  Y + + + D    F  M+E+ D ++WN+
Sbjct: 672  FSVLGLGHQIHALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNS 731

Query: 286  IIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
            +I+GY  SG   + +++   M       + FTF ++++ACA++A L  G +VHA  VR  
Sbjct: 732  MISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGMEVHACAVRAC 791

Query: 345  LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
            L+ ++ + +AL+DMYAKCG I  + + F  M  R++ +W SM+ GY  HGHG++A+++F 
Sbjct: 792  LESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFT 851

Query: 405  EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRA 463
             M + G  PD + F+ VL+ACSH GLVDEG K+FKSM + Y ++P  E + C+VDLLGRA
Sbjct: 852  RMKQHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKSMGEVYGLSPRIEHFSCMVDLLGRA 911

Query: 464  GRVKEAYELIKSMPFKPDESVWGPLLGAC--KEHRLPNLGKLAALRVLDLKPNMMGTYII 521
            G VK+  + IK+MP  P+  +W  +LGAC     R   LG+ AA  +++L+P     Y++
Sbjct: 912  GDVKKIEDFIKTMPMDPNILIWRTVLGACCRANGRNTELGQRAAKMLIELEPQNAVNYVL 971

Query: 522  LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGV 581
            LSN++AA G WE+  + R  MR    KK+ G SW+ ++D V  F+A D+     + +Y  
Sbjct: 972  LSNMHAAGGNWEDVVEARLAMRKAAVKKDAGCSWVNMKDGVHLFVAGDQTHPEKEKIYEK 1031

Query: 582  LEMLIRHMNETAYEPDIDCLIHD 604
            L+ L+  + +  Y P+    ++D
Sbjct: 1032 LKELMNKIRDAGYVPETKYALYD 1054



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 126/472 (26%), Positives = 237/472 (50%), Gaps = 18/472 (3%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
                LI  Y   G +  AR LFDEMP++++VSW+ +I+GYT     ++A ++F  ++ +
Sbjct: 176 FFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVISS 235

Query: 107 EVNPNAFTLSSVLKACK--GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
            + PN F + S L+AC+  G   +     +H    K      + + N LM +Y+ C  S+
Sbjct: 236 GLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSI 295

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMN--PYSF---SI 219
           D+A  VF+++K++N V+W ++I+ Y   G+      +F  M +EGVE+N  P  +   S+
Sbjct: 296 DDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSL 355

Query: 220 AVRAC--ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE 277
              AC  A  G V   +++   + K GF  +L V +++++ + R+  +  A   F +M +
Sbjct: 356 VTAACSLADCGLVLLEQML-TRIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYD 414

Query: 278 KDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALS----C 332
           ++ +T N ++ G  +     E   +F +MK +    N  +   +++     + L      
Sbjct: 415 RNAVTMNGLMVGLARQHQGEEAAKVFKEMK-DLVEINSESLVVLLSTFTEFSNLKEGKRK 473

Query: 333 GQQVHAGIVRRGL-DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG 391
           GQ+VHA + R GL D  +++ NAL++MY KC  I ++  +F  M  +D V+W SM+ G  
Sbjct: 474 GQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLD 533

Query: 392 AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE 451
            +   +EA+  F  M ++G+ P     ++ L++CS  G +  G +       + ++ +  
Sbjct: 534 HNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVS 593

Query: 452 IYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKL 503
           +   ++ L      + E  ++   MP + D+  W   +GA  ++    L  L
Sbjct: 594 VSNALLTLYAETDSINECQKVFFQMP-EYDQVSWNSFIGALAKYEASVLQAL 644



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 111/395 (28%), Positives = 199/395 (50%), Gaps = 28/395 (7%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM 174
           L S     K   SL +A  +H    K G    ++  N+L+++Y     ++ +AR +F++M
Sbjct: 143 LDSEFDRYKTSSSLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIG-NLVSARKLFDEM 201

Query: 175 KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA---CASTGWVS 231
             KN VSW+ LI+GY  +        +FK ++  G+  N ++   A+RA   C STG + 
Sbjct: 202 PQKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTG-IK 260

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC---LSDANQYFDEMTEKDLITWNTIIA 288
            G  IHA + K    S++ + N ++ MY   DC   + DA++ FDE+  ++ +TWN+II+
Sbjct: 261 LGMQIHAFICKLPCVSDMILSNVLMSMYS--DCSGSIDDAHRVFDEIKFRNSVTWNSIIS 318

Query: 289 GYEKSGSS-ECLNMFSKMKSE----RFSPNCFTFTSIIAACATLAALSCG----QQVHAG 339
            Y + G +     +FS M+ E       PN +T  S++ A  +LA   CG    +Q+   
Sbjct: 319 VYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAACSLA--DCGLVLLEQMLTR 376

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
           I + G   +L + +AL++ +A+ G +  ++ IF +M DR+ VT   +M+G      G+EA
Sbjct: 377 IEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEA 436

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDY-----NVNPNKEIYG 454
            ++F EM K  V  +    + +L+  +    + EG +  + ++ Y      V+    I  
Sbjct: 437 AKVFKEM-KDLVEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGN 495

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
            +V++ G+   +  A  + + MP K D   W  ++
Sbjct: 496 ALVNMYGKCTAIDNACSVFQLMPSK-DTVSWNSMI 529



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 139/274 (50%), Gaps = 16/274 (5%)

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG- 294
           +H  + K GF  ++   N+++++Y R   L  A + FDEM +K+L++W+ +I+GY ++  
Sbjct: 162 LHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRM 221

Query: 295 SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAA--LSCGQQVHAGIVRRGLDGNLALA 352
             E  ++F  + S    PN F   S + AC    +  +  G Q+HA I +     ++ L+
Sbjct: 222 PDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILS 281

Query: 353 NALIDMYAKC-GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411
           N L+ MY+ C G+I D+ ++F E+  R+ VTW S++  Y   G    A +LF  M   GV
Sbjct: 282 NVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGV 341

Query: 412 ----RPDRIVFMAVLT-ACSHAGLVDEGLKYFKSMNDYNVNPN--KEIY--GCVVDLLGR 462
               RP+     +++T ACS   L D GL   + M          +++Y    +V+   R
Sbjct: 342 ELNLRPNEYTLCSLVTAACS---LADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFAR 398

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR 496
            G +  A  + K M  +   ++ G ++G  ++H+
Sbjct: 399 YGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQ 432



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 7/99 (7%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++ + L+  Y   G I+ A   F+ MP R++ SW  MI+GY       +A  +F  M ++
Sbjct: 797 VVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQH 856

Query: 107 EVNPNAFTLSSVLKAC-------KGMKSLSNAALVHGMA 138
             +P+  T   VL AC       +G K   +   V+G++
Sbjct: 857 GQSPDHVTFVGVLSACSHVGLVDEGYKHFKSMGEVYGLS 895


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 198/573 (34%), Positives = 307/573 (53%), Gaps = 54/573 (9%)

Query: 40  LIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTV 99
           L P+  ++    ++ +Y   G +EEAR LF+   E DV+SW  +++GY  +   ++A  +
Sbjct: 31  LAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEAREL 90

Query: 100 FVEMVRNEVNPNAFTLSSVLKACKGM--KSLSNAALVHGMAIKEGLEGSIYVENSLMDVY 157
           F  M   +V      +S   +    +  + L +AA V            ++   +++  Y
Sbjct: 91  FDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR----------DVFTWTAVVSGY 140

Query: 158 ATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSF 217
           A   + ++ AR VF+ M  +N VSW  ++  Y           + + M+ E  E+     
Sbjct: 141 AQNGM-LEEARRVFDAMPERNAVSWNAMVAAY-----------IQRRMMDEAKEL----- 183

Query: 218 SIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE 277
              +  C                       N+   N++L  Y +   L +A   FD M +
Sbjct: 184 -FNMMPC----------------------RNVASWNTMLTGYAQAGMLEEAKAVFDTMPQ 220

Query: 278 KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQV 336
           KD ++W  ++A Y + G S E L +F +M       N   F  +++ CA +AAL CG Q+
Sbjct: 221 KDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQL 280

Query: 337 HAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHG 396
           H  ++R G      + NAL+ MY KCGN+ D++  F EM +RD+V+W +M+ GY  HG G
Sbjct: 281 HGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFG 340

Query: 397 KEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGC 455
           KEA+E+FD M  +  +PD I  + VL ACSH+GLV++G+ YF SM+ D+ V    E Y C
Sbjct: 341 KEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTC 400

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM 515
           ++DLLGRAGR+ EA++L+K MPF+PD ++WG LLGA + HR P LG+ AA ++ +L+P  
Sbjct: 401 MIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPEN 460

Query: 516 MGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHT 575
            G Y++LSNIYA+ GKW +  K R +M   G KK  G SWIEV++KV  F A D +    
Sbjct: 461 AGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEK 520

Query: 576 QYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           + +Y  LE L   M +  Y    D ++HD+E E
Sbjct: 521 EKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEE 553



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 104/445 (23%), Positives = 181/445 (40%), Gaps = 109/445 (24%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIA--------------- 85
           +P   S+    +I S+ + GL+  AR  FD  PE+D VSW  M+A               
Sbjct: 1   MPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF 60

Query: 86  ----------------GYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSS------------ 117
                           GY  +   ++A  +F  M   +V      +S             
Sbjct: 61  NSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARR 120

Query: 118 VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM----------DNA 167
           +  A       +  A+V G A    LE +  V +++ +  A    +M          D A
Sbjct: 121 LFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEA 180

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSG--------------------------NGYGG--- 198
           + +FN M  +N  SW T++TGYA +G                             GG   
Sbjct: 181 KELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSE 240

Query: 199 --LGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSIL 256
             L +F EM   G  +N  +F+  +  CA    +  G  +H  +I+ G+G    V N++L
Sbjct: 241 ETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALL 300

Query: 257 DMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCF 315
            MY +   + DA   F+EM E+D+++WNT+IAGY + G   E L +F  M++    P+  
Sbjct: 301 AMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDI 360

Query: 316 TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN------------ALIDMYAKCG 363
           T   ++AAC+           H+G+V +G+    ++ +             +ID+  + G
Sbjct: 361 TLVGVLAACS-----------HSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAG 409

Query: 364 NISDSQKIFSEMS-DRDLVTWTSMM 387
            ++++  +  +M  + D   W +++
Sbjct: 410 RLAEAHDLMKDMPFEPDSTMWGALL 434



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 125/262 (47%), Gaps = 32/262 (12%)

Query: 249 LPVMNSI-----LDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMF 302
           +PV +S+     +  +     +S A  YFD   EKD ++WN ++A Y ++G   E   +F
Sbjct: 1   MPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF 60

Query: 303 SKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362
           +     R   +  ++ ++++       +S  +++   +  R    ++   N ++  YA+ 
Sbjct: 61  NS----RTEWDVISWNALMSGYVQWGKMSEARELFDRMPGR----DVVSWNIMVSGYARR 112

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR--IVFMA 420
           G++ +++++F     RD+ TWT+++ GY  +G  +EA  +FD M      P+R  + + A
Sbjct: 113 GDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAM------PERNAVSWNA 166

Query: 421 VLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKP 480
           ++ A     ++DE  + F  M   NV      +  ++    +AG ++EA  +  +MP K 
Sbjct: 167 MVAAYIQRRMMDEAKELFNMMPCRNVAS----WNTMLTGYAQAGMLEEAKAVFDTMPQK- 221

Query: 481 DESVWGPLL-----GACKEHRL 497
           D   W  +L     G C E  L
Sbjct: 222 DAVSWAAMLAAYSQGGCSEETL 243


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 214/623 (34%), Positives = 328/623 (52%), Gaps = 63/623 (10%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P+  S+    +I  Y   G  E AR LFDEMPERD+VSW VMI GY       +A  +F
Sbjct: 85  MPRWSSVSYNAMISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELF 144

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHG-MAIKEGLEG----SIYVENSLMD 155
             M   +V     + +++L        + +A  V   M  K  +      S YV+NS ++
Sbjct: 145 ERMPERDV----CSWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLE 200

Query: 156 VYATCCISMDN---------------------ARLVFNDMKWKNDVSWTTLITGYAHSGN 194
                  S +N                     AR  F+ MK ++ VSW T+ITGYA +G 
Sbjct: 201 EACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGE 260

Query: 195 GYGGLGVFKE--------------------MLLEGVEM---NPYSFSIAVRACASTGWVS 231
                 +F E                    M+ E  E+    P    ++  A  + G+V 
Sbjct: 261 IDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPERNEVSWNAMLA-GYVQ 319

Query: 232 FGKLIHAAVIKHGFG----SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
            G+ +  A  K  F      N+   N+++  Y +   +S+A   FD+M ++D ++W  +I
Sbjct: 320 -GERVEMA--KELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMI 376

Query: 288 AGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           AGY +SG S E L +F  M+ E    N  +F+S ++ CA + AL  G+Q+H  +V+ G +
Sbjct: 377 AGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYE 436

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
               + NAL+ MY KCG+I ++  +F EM+ +D+V+W +M+ GY  HG G+EA+  F+ M
Sbjct: 437 TGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESM 496

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGR 465
            + G++PD    +AVL+ACSH GLVD+G +YF +M  DY V PN + Y C+VDLLGRAG 
Sbjct: 497 KREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGL 556

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           ++EA+ L+K+MPF+PD ++WG LLGA + H    L + AA ++  ++P   G Y++LSN+
Sbjct: 557 LEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNL 616

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           YA+ G+W +  K R  MR  G KK  G SWIE+++K   F   D+       ++  LE L
Sbjct: 617 YASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEDL 676

Query: 586 IRHMNETAYEPDIDCLIHDLEGE 608
              M +  Y      ++HD+E E
Sbjct: 677 DLRMKKAGYVSKTSVVLHDVEEE 699



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 13/148 (8%)

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           D ++   N  I  Y + G  S++ ++F  M     V++ +M+ GY  +G  + A  LFDE
Sbjct: 56  DSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDE 115

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEI--YGCVVDLLGRA 463
           M +     D + +  ++        + +  + F+ M      P +++  +  ++    + 
Sbjct: 116 MPER----DLVSWNVMIKGYVRNRNLGKARELFERM------PERDVCSWNTILSGYAQN 165

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGA 491
           G V +A  +   MP K D S W  LL A
Sbjct: 166 GCVDDARRVFDRMPEKNDVS-WNALLSA 192


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 187/511 (36%), Positives = 296/511 (57%), Gaps = 10/511 (1%)

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M+R  + P+ FT   ++KAC  ++       +H   +K G +  +++ NSL+ +Y  C  
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKC-D 59

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
             + +R VF++M  KN VSW+ +I           G  +F++ML EG    P   +I + 
Sbjct: 60  KYELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSR--PSRGAI-LN 116

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           A A          ++  V+++G   +  V ++   M+ R   +  A + FD +  KDL+T
Sbjct: 117 AMACVRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVT 176

Query: 283 WNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           W T I  Y K+    E L +  +M  +   P+  T   +I AC+TLA+      VH GI+
Sbjct: 177 WATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVH-GII 235

Query: 342 RRGLDGN--LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
             G   N  LA+  ALID+Y KCG+++ ++K+F  M +R+++TW++M+ GYG HG G+EA
Sbjct: 236 TTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREA 295

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVD 458
           + LFD+M K+ V+PD I F+++L+ACSH+GLV EG + F SM  D+ V P  E Y C+VD
Sbjct: 296 LNLFDQM-KASVKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVD 354

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518
           +LGRAG++ EA + I+ MP +P+ +VWG LLGAC+ H   +L ++ A  + DL P+  G 
Sbjct: 355 ILGRAGKLDEACDFIERMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDLDPHNAGR 414

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
           Y+IL NIY   GK +E    R +M+  G KK  G S IE+++K+  F+A D+    T  +
Sbjct: 415 YVILYNIYTLTGKRKEADSIRTLMKNRGVKKIAGYSVIEIKNKLYAFVAGDRSHPQTDLI 474

Query: 579 YGVLEMLIRHMNETAYEPDIDCLIHDLEGET 609
           Y  LE L+  + +  Y PDI+ ++HD++ ET
Sbjct: 475 YSELERLMDRIRQEGYTPDINFVLHDVDEET 505



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 177/345 (51%), Gaps = 11/345 (3%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           ++ +LI  Y      E +R +FDEMP+++ VSW+ +I      +   + +++F +M+   
Sbjct: 47  ISNSLITMYGKCDKYELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEG 106

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
             P+     ++L A   ++S   A  V+ + ++ GL+    V+++   ++A C   ++ A
Sbjct: 107 SRPSR---GAILNAMACVRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCG-RVEVA 162

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R +F+ +  K+ V+W T I  Y  +      LG+ K+M+L+G+  +  +    +RAC++ 
Sbjct: 163 RKLFDGIMSKDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTL 222

Query: 228 GWVSFGKLIHAAVIKHGFGSN--LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
                  ++H  +I  GF  N  L V  +++D+Y +   L+ A + FD M E+++ITW+ 
Sbjct: 223 ASFQLAHIVH-GIITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSA 281

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR- 343
           +I+GY   G   E LN+F +MK+    P+  TF SI++AC+    ++ G +    + R  
Sbjct: 282 MISGYGMHGWGREALNLFDQMKAS-VKPDHITFVSILSACSHSGLVAEGWECFNSMARDF 340

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMM 387
           G+         ++D+  + G + ++      M  R +   W +++
Sbjct: 341 GVTPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAAVWGALL 385


>gi|449445401|ref|XP_004140461.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Cucumis sativus]
          Length = 697

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 187/562 (33%), Positives = 313/562 (55%), Gaps = 5/562 (0%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV-RNEV 108
            +LI  Y     +  AR LFD MP R+VVSW+ ++AGY       + + +F +MV ++ +
Sbjct: 61  NSLINLYVKCDEVSIARKLFDSMPRRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNI 120

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
            PN + +++ + +C     +      HG A+K GLE   YV+N+L+ +Y+ C   +  A 
Sbjct: 121 FPNEYVIATAISSCDSQMYVEGKQ-CHGYALKSGLEFHQYVKNALIQLYSKCS-DVGAAI 178

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            +   +   +   +  ++ G     +    + V K ++ EG+E N  ++    R CAS  
Sbjct: 179 QILYTVPGNDIFCYNLVVNGLLQHTHMAEAVDVLKLIISEGIEWNNATYVTIFRLCASLK 238

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            ++ GK +HA ++K     ++ + +SI+DMY +   +     +FD +  +++++W +IIA
Sbjct: 239 DITLGKQVHAQMLKSDIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTSIIA 298

Query: 289 GY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
            Y +     E LN+FSKM+ +   PN +T   +  + A L+AL  G Q+HA   + GL G
Sbjct: 299 AYFQNEFFEEALNLFSKMEIDCIPPNEYTMAVLFNSAAGLSALCLGDQLHARAEKSGLKG 358

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           N+ + NALI MY K G+I  +Q +FS M+  +++TW +++ G+  HG GKEA+ +F +M+
Sbjct: 359 NVMVGNALIIMYFKSGDILAAQSVFSNMTCCNIITWNAIITGHSHHGLGKEALSMFQDMM 418

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS-MNDYNVNPNKEIYGCVVDLLGRAGRV 466
            +G RP+ + F+ V+ AC+H  LVDEG  YF   M  + + P  E Y C+V LL R+GR+
Sbjct: 419 ATGERPNYVTFIGVILACAHLKLVDEGFYYFNHLMKQFRIVPGLEHYTCIVGLLSRSGRL 478

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            EA   ++S     D   W  LL AC  H+  + G+  A  +L L+P  +GTYI+LSN++
Sbjct: 479 DEAENFMRSHQINWDVVSWRTLLNACYVHKHYDKGRKIAEYLLQLEPRDVGTYILLSNMH 538

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           A   +W+   + RK+MR    KKE G+SW+E+R+    F + D        +Y  ++ L+
Sbjct: 539 ARVRRWDHVVEIRKLMRERNVKKEPGVSWLEIRNVAHVFTSEDIKHPEANLIYENVKDLL 598

Query: 587 RHMNETAYEPDIDCLIHDLEGE 608
             +    Y PDID ++HD+E E
Sbjct: 599 SKIRPLGYVPDIDNVLHDIEDE 620



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 130/251 (51%), Gaps = 6/251 (2%)

Query: 221 VRACASTGWVSFGKLIHA--AVIKHGF-GSNLPVMNSILDMYCRFDCLSDANQYFDEMTE 277
           ++  A    + FG+ IHA   +  H +  S +  +NS++++Y + D +S A + FD M  
Sbjct: 26  LKVAADAKNLKFGRTIHAHLTITNHNYRDSKVNQLNSLINLYVKCDEVSIARKLFDSMPR 85

Query: 278 KDLITWNTIIAGYEKSGSS-ECLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQ 335
           +++++W+ ++AGY ++G+  E   +F KM   +   PN +   + I++C +   +  G+Q
Sbjct: 86  RNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNIFPNEYVIATAISSCDSQMYVE-GKQ 144

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
            H   ++ GL+ +  + NALI +Y+KC ++  + +I   +   D+  +  ++ G   H H
Sbjct: 145 CHGYALKSGLEFHQYVKNALIQLYSKCSDVGAAIQILYTVPGNDIFCYNLVVNGLLQHTH 204

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455
             EA+++   ++  G+  +   ++ +   C+    +  G +    M   +++ +  I   
Sbjct: 205 MAEAVDVLKLIISEGIEWNNATYVTIFRLCASLKDITLGKQVHAQMLKSDIDCDVYIGSS 264

Query: 456 VVDLLGRAGRV 466
           ++D+ G+ G V
Sbjct: 265 IIDMYGKCGNV 275



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 121/246 (49%), Gaps = 11/246 (4%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + +++I  Y   G +   RT FD +  R+VVSWT +IA Y       +A  +F +M  + 
Sbjct: 261 IGSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTSIIAAYFQNEFFEEALNLFSKMEIDC 320

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + PN +T++ +  +  G+ +L     +H  A K GL+G++ V N+L+ +Y      +  A
Sbjct: 321 IPPNEYTMAVLFNSAAGLSALCLGDQLHARAEKSGLKGNVMVGNALIIMYFKSG-DILAA 379

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA-- 225
           + VF++M   N ++W  +ITG++H G G   L +F++M+  G   N  +F   + ACA  
Sbjct: 380 QSVFSNMTCCNIITWNAIITGHSHHGLGKEALSMFQDMMATGERPNYVTFIGVILACAHL 439

Query: 226 ---STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYF-DEMTEKDLI 281
                G+  F  L+    I  G    L     I+ +  R   L +A  +        D++
Sbjct: 440 KLVDEGFYYFNHLMKQFRIVPG----LEHYTCIVGLLSRSGRLDEAENFMRSHQINWDVV 495

Query: 282 TWNTII 287
           +W T++
Sbjct: 496 SWRTLL 501



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 13/166 (7%)

Query: 320 IIAACATLAALSCGQQVHAGIV---RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           ++   A    L  G+ +HA +        D  +   N+LI++Y KC  +S ++K+F  M 
Sbjct: 25  LLKVAADAKNLKFGRTIHAHLTITNHNYRDSKVNQLNSLINLYVKCDEVSIARKLFDSMP 84

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEM-VKSGVRPDRIVFMAVLTACSHAGLVDEGL 435
            R++V+W+++M GY  +G+  E  ELF +M VK  + P+  V    +++C     V EG 
Sbjct: 85  RRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNIFPNEYVIATAISSCDSQMYV-EG- 142

Query: 436 KYFKSMNDYNVNPNKEIYGCV----VDLLGRAGRVKEAYELIKSMP 477
              K  + Y +    E +  V    + L  +   V  A +++ ++P
Sbjct: 143 ---KQCHGYALKSGLEFHQYVKNALIQLYSKCSDVGAAIQILYTVP 185



 Score = 47.0 bits (110), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 43/84 (51%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           KG  ++   LI  YF  G I  A+++F  M   ++++W  +I G++      +A ++F +
Sbjct: 357 KGNVMVGNALIIMYFKSGDILAAQSVFSNMTCCNIITWNAIITGHSHHGLGKEALSMFQD 416

Query: 103 MVRNEVNPNAFTLSSVLKACKGMK 126
           M+     PN  T   V+ AC  +K
Sbjct: 417 MMATGERPNYVTFIGVILACAHLK 440


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 186/534 (34%), Positives = 303/534 (56%), Gaps = 4/534 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A  LI  Y   G +E+A  +F  M  RD VSW  +++G      +  A   F +M  + 
Sbjct: 285 VANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSA 344

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
             P+  ++ +++ A     +L N   VH  AI+ GL+ ++ + N+L+D+YA CC  + + 
Sbjct: 345 QKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCC-CVKHM 403

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
              F  M  K+ +SWTT+I GYA +      + +F+++ ++G++++P      +RAC+  
Sbjct: 404 GYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGL 463

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
              +F + IH  V K    +++ + N+I+++Y        A + F+ +  KD+++W ++I
Sbjct: 464 KSRNFIREIHGYVFKRDL-ADIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMI 522

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
                +G   E L +F  +K     P+     S ++A A L++L  G+++H  ++R+G  
Sbjct: 523 TCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFF 582

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
               +A++L+DMYA CG + +S+K+F  +  RDL+ WTSM+   G HG G EAI LF +M
Sbjct: 583 LEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNEAIALFKKM 642

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGR 465
               V PD I F+A+L ACSH+GL+ EG ++F+ M   Y + P  E Y C+VDLL R+  
Sbjct: 643 TDENVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNS 702

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           ++EAY+ ++SMP KP   VW  LLGAC  H    LG+LAA  +L       G Y ++SNI
Sbjct: 703 LEEAYQFVRSMPIKPSSEVWCALLGACHIHSNKELGELAAKELLQSDTKNSGKYALISNI 762

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVY 579
           +AA+G+W +  + R  M+G G KK  G SWIEV +K+  F+A DK    T  +Y
Sbjct: 763 FAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIY 816



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 154/546 (28%), Positives = 273/546 (50%), Gaps = 30/546 (5%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + LAT L+  Y   G +++A  +FDEM ER + +W  M+  + S   + +A  ++ EM  
Sbjct: 79  AFLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRV 138

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             V  +A T  SVLKAC  +      A +HG+A+K G    ++V N+L+ +Y  C   + 
Sbjct: 139 LGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCG-DLG 197

Query: 166 NARLVFND--MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
            AR++F+   M+ ++ VSW ++I+ +   G     L +F+ M   GV  N Y+F  A++ 
Sbjct: 198 GARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQG 257

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
                +V  G  IH A +K    +++ V N+++ MY +   + DA + F  M  +D ++W
Sbjct: 258 VEDPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSW 317

Query: 284 NTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           NT+++G  +     + LN F  M++    P+  +  ++IAA      L  G++VHA  +R
Sbjct: 318 NTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIR 377

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            GLD N+ + N LIDMYAKC  +      F  M ++DL++WT+++ GY  +    EAI L
Sbjct: 378 NGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINL 437

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK---YFKSMNDYNVNPNKE---IYGCV 456
           F ++   G+  D ++  +VL ACS       GLK   + + ++ Y    +     +   +
Sbjct: 438 FRKVQVKGMDVDPMMIGSVLRACS-------GLKSRNFIREIHGYVFKRDLADIMLQNAI 490

Query: 457 VDLLGRAGR---VKEAYELIKSMPFKPDESVWGPLLGACKEHRLP--NLGKLAALRVLDL 511
           V++ G  G     + A+E I+S     D   W  ++  C  + LP   L    +L+  ++
Sbjct: 491 VNVYGEVGHRDYARRAFESIRS----KDIVSWTSMITCCVHNGLPVEALELFYSLKQTNI 546

Query: 512 KPNMMGTYIILSNI--YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIAND 569
           +P+ +     LS     ++  K +E   F  I +G   +  +  S +++    CG + N 
Sbjct: 547 QPDSIAIISALSATANLSSLKKGKEIHGFL-IRKGFFLEGPIASSLVDMY-ACCGTVENS 604

Query: 570 KMGSHT 575
           +   H+
Sbjct: 605 RKMFHS 610



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 103/412 (25%), Positives = 204/412 (49%), Gaps = 11/412 (2%)

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMK 175
           S +L  C  +K+L     +H   +K  L  S ++   L+ +Y  C  S+ +A  VF++M 
Sbjct: 50  SLLLDLCVAVKALPQGQQLHARLLKSHL--SAFLATKLLHMYEKCG-SLKDAVKVFDEMT 106

Query: 176 WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKL 235
            +   +W  ++  +  SG     + ++KEM + GV ++  +F   ++AC + G    G  
Sbjct: 107 ERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAE 166

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE--MTEKDLITWNTIIAGYEKS 293
           IH   +K GFG  + V N+++ MY +   L  A   FD   M ++D ++WN+II+ +   
Sbjct: 167 IHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTE 226

Query: 294 GSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
           G   E L++F +M+    + N +TF + +      + +  G  +H   ++     ++ +A
Sbjct: 227 GKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVA 286

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
           NALI MYAKCG + D++++F+ M  RD V+W +++ G   +   ++A+  F +M  S  +
Sbjct: 287 NALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQK 346

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
           PD++  + ++ A   +G +  G +         ++ N +I   ++D+  +   VK     
Sbjct: 347 PDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYA 406

Query: 473 IKSMPFKPDESVWGPLLGACKEHRLP----NLGKLAALRVLDLKPNMMGTYI 520
            + M  K D   W  ++    ++       NL +   ++ +D+ P M+G+ +
Sbjct: 407 FECMHEK-DLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVL 457


>gi|357128364|ref|XP_003565843.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Brachypodium distachyon]
          Length = 728

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 214/618 (34%), Positives = 332/618 (53%), Gaps = 40/618 (6%)

Query: 6   LLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEA 65
           LL +AA+ H             +V+ S++ S           +AT L  +Y   G +  A
Sbjct: 129 LLPHAASLHAF-----------AVRSSALSS---------VFVATALADAYAKAGRLALA 168

Query: 66  RTLFDEMP--ERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE---VNPNAFTLSSVLK 120
             +FDEMP   R+VVSWT ++A  +     + A   F EM  +     + +A+  +    
Sbjct: 169 LRVFDEMPAARRNVVSWTTLVAALSRAGRRHDALRAFAEMRASAGVACDSHAYAAALTAC 228

Query: 121 ACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDV 180
           A  GM  LS    VH +  K GL+ + YV N+L  +YA     +  A      M  ++  
Sbjct: 229 ADAGM--LSRGREVHALCAKLGLDATPYVANTLATLYARWG-DVGRALAAVGRMGSRDVA 285

Query: 181 SWTTLITGYAHSGNGYGGLGVFKEML----LEGVEMNPYSFSIAVRACASTGWVSFGKLI 236
           +WTT+I+ Y  +G     +  F  M+    +     N Y+++  + ACA T  V  G+ +
Sbjct: 286 AWTTVISSYVQTGRAKEAIEAFVAMVRNEAVNAASPNEYTYAAVIAACADTSCVCLGEQL 345

Query: 237 HAAVIKHGFGSNLPVMNSILDMYCRFDC-LSDANQYFDEMTEKDLITWNTIIAGYEKSG- 294
           H  V + GF S   V NS++ +Y R    LS A+  F E   KD+++W+ II+GY + G 
Sbjct: 346 HGQVAQRGFASARSVANSLVTLYARVAGRLSAADAVFQESAAKDVVSWSAIISGYAQEGL 405

Query: 295 SSECLNMFSKMKSERF-SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353
           + E   +F++M+      PN FT  S+++ CAT A L  G+Q+HA ++  GL+ +  + +
Sbjct: 406 AGEAFALFTEMRRHHCPRPNEFTLASLLSVCATAATLDAGRQLHALVMAAGLEHHAMIRS 465

Query: 354 ALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP 413
           AL+DMY K G++SD+  +FS  +  D+V+WT+M++G+  HG  K A+ELF+EM   G++P
Sbjct: 466 ALVDMYGKSGSMSDADVVFSNRTKDDVVSWTAMIVGHAEHGQSKRALELFEEMCLVGLKP 525

Query: 414 DRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
           D + F+ VL+AC HAG V+ GL+Y  +M+  Y + P KE YGCVVDLLGRAGR+ EA EL
Sbjct: 526 DHVAFIGVLSACCHAGEVELGLRYLSAMSKIYGLEPAKEHYGCVVDLLGRAGRINEAEEL 585

Query: 473 IKSMPF-KPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK 531
           I  M   + D  VW  LL AC        GK AA R ++ +P   G ++ ++N+YA++G+
Sbjct: 586 IGRMAANERDGVVWTSLLRACAARGEEETGKKAAARAMEAEPWGAGAHVAMANLYASKGQ 645

Query: 532 WEEFAKFRKIMRGMGSKKEVGMSWIEV--RDKVCG-FIANDKMGSHTQYVYGVLEMLIRH 588
           W E A+ R +M+  G  K VG S I V   D+  G F+A D+       +Y +LE++   
Sbjct: 646 WCEAAQERHMMKQKGVVKGVGWSSITVGGEDRAVGVFVAGDRTHPQDNVIYEMLELIYYG 705

Query: 589 MNETAYEPDIDCLIHDLE 606
           +    Y P    L  ++E
Sbjct: 706 VGMARYVPAQMNLASEVE 723



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 140/494 (28%), Positives = 250/494 (50%), Gaps = 29/494 (5%)

Query: 29  VKKSSIQSDP------PLIPKGPSILATNL---IKSYFDEGLIEEARTLFDEMPERDVVS 79
           +++ SI +D       P  P+ P +L  +L   +K     G + +A +LFD  P RD  S
Sbjct: 14  LRRRSIWTDAVPVPAHPDPPQSPLLLLQDLNARLKRLVQSGRLADAHSLFDGAPHRDEAS 73

Query: 80  WTVMIAGYTSFNCHNQAWTVFVEMVRNEVN------PNAFTLSSVLKACKGMKS--LSNA 131
           ++ ++AG+ +      A  +FV + R   +       + F LS V KA        L +A
Sbjct: 74  YSALLAGHAAAGDFAGAMALFVRLRRTSSSSRPLDAADPFVLSLVFKASAADPGLLLPHA 133

Query: 132 ALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM--KWKNDVSWTTLITGY 189
           A +H  A++     S++V  +L D YA     +  A  VF++M    +N VSWTTL+   
Sbjct: 134 ASLHAFAVRSSALSSVFVATALADAYAKAG-RLALALRVFDEMPAARRNVVSWTTLVAAL 192

Query: 190 AHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSN 248
           + +G  +  L  F EM    GV  + ++++ A+ ACA  G +S G+ +HA   K G  + 
Sbjct: 193 SRAGRRHDALRAFAEMRASAGVACDSHAYAAALTACADAGMLSRGREVHALCAKLGLDAT 252

Query: 249 LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKM-K 306
             V N++  +Y R+  +  A      M  +D+  W T+I+ Y ++G + E +  F  M +
Sbjct: 253 PYVANTLATLYARWGDVGRALAAVGRMGSRDVAAWTTVISSYVQTGRAKEAIEAFVAMVR 312

Query: 307 SERF---SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK-C 362
           +E     SPN +T+ ++IAACA  + +  G+Q+H  + +RG     ++AN+L+ +YA+  
Sbjct: 313 NEAVNAASPNEYTYAAVIAACADTSCVCLGEQLHGQVAQRGFASARSVANSLVTLYARVA 372

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV-RPDRIVFMAV 421
           G +S +  +F E + +D+V+W++++ GY   G   EA  LF EM +    RP+     ++
Sbjct: 373 GRLSAADAVFQESAAKDVVSWSAIISGYAQEGLAGEAFALFTEMRRHHCPRPNEFTLASL 432

Query: 422 LTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481
           L+ C+ A  +D G +    +    +  +  I   +VD+ G++G + +A +++ S   K D
Sbjct: 433 LSVCATAATLDAGRQLHALVMAAGLEHHAMIRSALVDMYGKSGSMSDA-DVVFSNRTKDD 491

Query: 482 ESVWGPLLGACKEH 495
              W  ++    EH
Sbjct: 492 VVSWTAMIVGHAEH 505


>gi|356495419|ref|XP_003516575.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Glycine max]
          Length = 666

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 190/519 (36%), Positives = 307/519 (59%), Gaps = 5/519 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + +   L+  Y + G  E A+ +FD M ER V+SW  MI GY   NC   A  V+  M+ 
Sbjct: 148 TFVQNTLLAMYMNAGEKEAAQLVFDPMQERTVISWNTMINGYFRNNCAEDAVNVYGRMMD 207

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             V P+  T+ SVL AC  +K++     VH +  ++G  G+I V N+L+D+Y  C   M 
Sbjct: 208 VGVEPDCATVVSVLPACGLLKNVELGREVHTLVQEKGFWGNIVVRNALVDMYVKCG-QMK 266

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A L+   M  K+ V+WTTLI GY  +G+    L +   M  EGV+ N  S +  + AC 
Sbjct: 267 EAWLLAKGMDDKDVVTWTTLINGYILNGDARSALMLCGMMQCEGVKPNSVSIASLLSACG 326

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           S  +++ GK +HA  I+    S + V  ++++MY + +C + + + F   ++K    WN 
Sbjct: 327 SLVYLNHGKCLHAWAIRQKIESEVIVETALINMYAKCNCGNLSYKVFMGTSKKRTAPWNA 386

Query: 286 IIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +++G+ +   + E + +F +M  +   P+  TF S++ A A LA L     +H  ++R G
Sbjct: 387 LLSGFIQNRLAREAIELFKQMLVKDVQPDHATFNSLLPAYAILADLQQAMNIHCYLIRSG 446

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMS--DRDLVTWTSMMIGYGAHGHGKEAIEL 402
               L +A+ L+D+Y+KCG++  + +IF+ +S  D+D++ W++++  YG HGHGK A++L
Sbjct: 447 FLYRLEVASILVDIYSKCGSLGYAHQIFNIISLKDKDIIIWSAIIAAYGKHGHGKMAVKL 506

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLG 461
           F++MV+SGV+P+ + F +VL ACSHAGLV+EG   F  M   + +  + + Y C++DLLG
Sbjct: 507 FNQMVQSGVKPNHVTFTSVLHACSHAGLVNEGFSLFNFMLKQHQIISHVDHYTCMIDLLG 566

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           RAGR+ +AY LI++MP  P+ +VWG LLGAC  H    LG++AA     L+P   G Y++
Sbjct: 567 RAGRLNDAYNLIRTMPITPNHAVWGALLGACVIHENVELGEVAARWTFKLEPENTGNYVL 626

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRD 560
           L+ +YAA G+W +  + R ++  +G +K    S IEVRD
Sbjct: 627 LAKLYAAVGRWGDAERVRDMVNEVGLRKLPAHSLIEVRD 665



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 125/443 (28%), Positives = 222/443 (50%), Gaps = 11/443 (2%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV- 104
           S L + L  +Y        A  LFD++ +  + SW  M+  Y        A  +FVEM+ 
Sbjct: 46  SNLCSKLATTYAQCHHASYASHLFDKLSQPCLFSWNAMMRMYVQIGRPFDALNLFVEMLG 105

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
                P+ FT   V+KAC  +  +     +HG   K G +   +V+N+L+ +Y       
Sbjct: 106 SGRTLPDKFTYPVVIKACGDLSLIDVGVGIHGQTFKFGYDSDTFVQNTLLAMYMNAG-EK 164

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           + A+LVF+ M+ +  +SW T+I GY  +      + V+  M+  GVE +  +    + AC
Sbjct: 165 EAAQLVFDPMQERTVISWNTMINGYFRNNCAEDAVNVYGRMMDVGVEPDCATVVSVLPAC 224

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
                V  G+ +H  V + GF  N+ V N+++DMY +   + +A      M +KD++TW 
Sbjct: 225 GLLKNVELGREVHTLVQEKGFWGNIVVRNALVDMYVKCGQMKEAWLLAKGMDDKDVVTWT 284

Query: 285 TIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           T+I GY  +G +   L +   M+ E   PN  +  S+++AC +L  L+ G+ +HA  +R+
Sbjct: 285 TLINGYILNGDARSALMLCGMMQCEGVKPNSVSIASLLSACGSLVYLNHGKCLHAWAIRQ 344

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
            ++  + +  ALI+MYAKC   + S K+F   S +    W +++ G+  +   +EAIELF
Sbjct: 345 KIESEVIVETALINMYAKCNCGNLSYKVFMGTSKKRTAPWNALLSGFIQNRLAREAIELF 404

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP----NKEIYGCVVDL 459
            +M+   V+PD   F ++L A  +A L D  L+   +++ Y +        E+   +VD+
Sbjct: 405 KQMLVKDVQPDHATFNSLLPA--YAILAD--LQQAMNIHCYLIRSGFLYRLEVASILVDI 460

Query: 460 LGRAGRVKEAYELIKSMPFKPDE 482
             + G +  A+++   +  K  +
Sbjct: 461 YSKCGSLGYAHQIFNIISLKDKD 483



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 109/426 (25%), Positives = 206/426 (48%), Gaps = 20/426 (4%)

Query: 117 SVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW 176
           S+L      +S S    +H + +  G+  S  + + L   YA C  +   A  +F+ +  
Sbjct: 16  SLLGKFSASQSHSETKRLHALILTLGIFSSSNLCSKLATTYAQCHHA-SYASHLFDKLSQ 74

Query: 177 KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEM-NPYSFSIAVRACASTGWVSFGKL 235
               SW  ++  Y   G  +  L +F EML  G  + + +++ + ++AC     +  G  
Sbjct: 75  PCLFSWNAMMRMYVQIGRPFDALNLFVEMLGSGRTLPDKFTYPVVIKACGDLSLIDVGVG 134

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS 295
           IH    K G+ S+  V N++L MY        A   FD M E+ +I+WNT+I GY ++  
Sbjct: 135 IHGQTFKFGYDSDTFVQNTLLAMYMNAGEKEAAQLVFDPMQERTVISWNTMINGYFRNNC 194

Query: 296 SE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
           +E  +N++ +M      P+C T  S++ AC  L  +  G++VH  +  +G  GN+ + NA
Sbjct: 195 AEDAVNVYGRMMDVGVEPDCATVVSVLPACGLLKNVELGREVHTLVQEKGFWGNIVVRNA 254

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
           L+DMY KCG + ++  +   M D+D+VTWT+++ GY  +G  + A+ L   M   GV+P+
Sbjct: 255 LVDMYVKCGQMKEAWLLAKGMDDKDVVTWTTLINGYILNGDARSALMLCGMMQCEGVKPN 314

Query: 415 RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE----IYGCVVDLLGRAGRVKEAY 470
            +   ++L+AC     ++ G    K ++ + +    E    +   ++++  +      +Y
Sbjct: 315 SVSIASLLSACGSLVYLNHG----KCLHAWAIRQKIESEVIVETALINMYAKCNCGNLSY 370

Query: 471 ELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPN------MMGTYIIL 522
           ++      K   + W  LL    ++RL    +     + V D++P+      ++  Y IL
Sbjct: 371 KVFMGTS-KKRTAPWNALLSGFIQNRLAREAIELFKQMLVKDVQPDHATFNSLLPAYAIL 429

Query: 523 SNIYAA 528
           +++  A
Sbjct: 430 ADLQQA 435



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 174/349 (49%), Gaps = 31/349 (8%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G  ++   L+  Y   G ++EA  L   M ++DVV+WT +I GY   N   ++  +   M
Sbjct: 247 GNIVVRNALVDMYVKCGQMKEAWLLAKGMDDKDVVTWTTLINGYI-LNGDARSALMLCGM 305

Query: 104 VRNE-VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-C 161
           ++ E V PN+ +++S+L AC  +  L++   +H  AI++ +E  + VE +L+++YA C C
Sbjct: 306 MQCEGVKPNSVSIASLLSACGSLVYLNHGKCLHAWAIRQKIESEVIVETALINMYAKCNC 365

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
            ++     VF     K    W  L++G+  +      + +FK+ML++ V+ +  +F+  +
Sbjct: 366 GNLSYK--VFMGTSKKRTAPWNALLSGFIQNRLAREAIELFKQMLVKDVQPDHATFNSLL 423

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFD--EMTEKD 279
            A A    +     IH  +I+ GF   L V + ++D+Y +   L  A+Q F+   + +KD
Sbjct: 424 PAYAILADLQQAMNIHCYLIRSGFLYRLEVASILVDIYSKCGSLGYAHQIFNIISLKDKD 483

Query: 280 LITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           +I W+ IIA Y K G  +  + +F++M      PN  TFTS++ AC+           HA
Sbjct: 484 IIIWSAIIAAYGKHGHGKMAVKLFNQMVQSGVKPNHVTFTSVLHACS-----------HA 532

Query: 339 GIVRRGLD-GNLALAN-----------ALIDMYAKCGNISDSQKIFSEM 375
           G+V  G    N  L              +ID+  + G ++D+  +   M
Sbjct: 533 GLVNEGFSLFNFMLKQHQIISHVDHYTCMIDLLGRAGRLNDAYNLIRTM 581



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 9/165 (5%)

Query: 317 FTSIIAACATL-AALSCGQ------QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
           F +  A C +L    S  Q      ++HA I+  G+  +  L + L   YA+C + S + 
Sbjct: 7   FATTAAQCESLLGKFSASQSHSETKRLHALILTLGIFSSSNLCSKLATTYAQCHHASYAS 66

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG-VRPDRIVFMAVLTACSHA 428
            +F ++S   L +W +MM  Y   G   +A+ LF EM+ SG   PD+  +  V+ AC   
Sbjct: 67  HLFDKLSQPCLFSWNAMMRMYVQIGRPFDALNLFVEMLGSGRTLPDKFTYPVVIKACGDL 126

Query: 429 GLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELI 473
            L+D G+        +  + +  +   ++ +   AG  KEA +L+
Sbjct: 127 SLIDVGVGIHGQTFKFGYDSDTFVQNTLLAMYMNAGE-KEAAQLV 170


>gi|413946633|gb|AFW79282.1| hypothetical protein ZEAMMB73_599854 [Zea mays]
          Length = 863

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 204/547 (37%), Positives = 311/547 (56%), Gaps = 4/547 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+  Y   G +  AR +FD M   D +SW  MIAG+      N    +F+ M+ +EV PN
Sbjct: 230 LMTMYAKCGDVMAARKVFDSMTVMDCISWNAMIAGHFENGECNAGLELFLTMLHDEVQPN 289

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
             T++SV  A   +  ++ A  +HG+A+K G  G +   NSL+ +YA+  + M  AR VF
Sbjct: 290 LMTITSVTVASGLLSDVTFAKEMHGLAVKRGFAGDVAFCNSLIQMYASLGM-MRQARTVF 348

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           + M  ++ ++WT +I+GY  +G     L V+  M +  V  +  + + A+ ACA  G + 
Sbjct: 349 SRMDTRDAMTWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLD 408

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY- 290
            G  +H      GF S + V N+IL+MY +   +  A + F  M EKD+++W+++IAG+ 
Sbjct: 409 VGVKLHELAESKGFISYIVVTNAILEMYAKSKRIDKAIEVFKCMHEKDVVSWSSMIAGFC 468

Query: 291 EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
               + E L  F  M ++   PN  TF + +AACA   AL  G+++HA ++R G++    
Sbjct: 469 FNHRNFEALYYFRHMLAD-VKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIEYEGY 527

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           L NALID+Y KCG    +   F     +D+V+W  M+ G+ AHGHG  A+  F++MVK G
Sbjct: 528 LPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAGFVAHGHGDTALSFFNQMVKIG 587

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEA 469
             PD + F+A+L ACS  G+V EG + F SM + Y++ PN + Y C+VDLL RAG++ EA
Sbjct: 588 ECPDEVTFVALLCACSRGGMVSEGWELFHSMTEKYSIVPNLKHYACMVDLLSRAGQLTEA 647

Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529
           Y  I  MP  PD +VWG LL  C+ HR   LG+LAA  VL L+PN  G +++L ++YA  
Sbjct: 648 YNFINEMPITPDAAVWGALLNGCRIHRHVELGELAAKYVLALEPNDAGYHVLLCDLYADA 707

Query: 530 GKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHM 589
             W++ A+ RK MR  G   + G SW+EV+  V  F+ +D+     + +  VLE +   M
Sbjct: 708 CLWDKLARVRKTMREKGLDHDSGCSWVEVKGVVHAFLTDDESHPQIREINTVLEGIYERM 767

Query: 590 NETAYEP 596
             + Y P
Sbjct: 768 KASGYAP 774



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 112/357 (31%), Positives = 188/357 (52%), Gaps = 3/357 (0%)

Query: 64  EARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACK 123
            A  +F +MPERDV SW VM+ GY      ++A  ++  M+   V P+ +T   VL++C 
Sbjct: 141 HAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMWAGVRPDVYTFPCVLRSCG 200

Query: 124 GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWT 183
           G+        VH   ++ G    + V N+LM +YA C   M  AR VF+ M   + +SW 
Sbjct: 201 GVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVM-AARKVFDSMTVMDCISWN 259

Query: 184 TLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH 243
            +I G+  +G    GL +F  ML + V+ N  + +    A      V+F K +H   +K 
Sbjct: 260 AMIAGHFENGECNAGLELFLTMLHDEVQPNLMTITSVTVASGLLSDVTFAKEMHGLAVKR 319

Query: 244 GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMF 302
           GF  ++   NS++ MY     +  A   F  M  +D +TW  +I+GYEK+G   + L ++
Sbjct: 320 GFAGDVAFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMISGYEKNGFPDKALEVY 379

Query: 303 SKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362
           + M+    SP+  T  S +AACA L +L  G ++H     +G    + + NA+++MYAK 
Sbjct: 380 ALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFISYIVVTNAILEMYAKS 439

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFM 419
             I  + ++F  M ++D+V+W+SM+ G+  +    EA+  F  M+ + V+P+ + F+
Sbjct: 440 KRIDKAIEVFKCMHEKDVVSWSSMIAGFCFNHRNFEALYYFRHML-ADVKPNSVTFI 495



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/355 (31%), Positives = 186/355 (52%), Gaps = 11/355 (3%)

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +A  VF  M  ++  SW  ++ GY  SG     L ++  M+  GV  + Y+F   +R+C 
Sbjct: 141 HAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMWAGVRPDVYTFPCVLRSCG 200

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
                  G+ +HA V++ GFG  + V+N+++ MY +   +  A + FD MT  D I+WN 
Sbjct: 201 GVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMAARKVFDSMTVMDCISWNA 260

Query: 286 IIAGYEKSGSSEC---LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           +IAG+ ++G  EC   L +F  M  +   PN  T TS+  A   L+ ++  +++H   V+
Sbjct: 261 MIAGHFENG--ECNAGLELFLTMLHDEVQPNLMTITSVTVASGLLSDVTFAKEMHGLAVK 318

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
           RG  G++A  N+LI MYA  G +  ++ +FS M  RD +TWT+M+ GY  +G   +A+E+
Sbjct: 319 RGFAGDVAFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMISGYEKNGFPDKALEV 378

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           +  M  + V PD I   + L AC+  G +D G+K  +            +   ++++  +
Sbjct: 379 YALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFISYIVVTNAILEMYAK 438

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLL-GACKEHRLPNLGKLAALR--VLDLKPN 514
           + R+ +A E+ K M  K D   W  ++ G C  HR  N   L   R  + D+KPN
Sbjct: 439 SKRIDKAIEVFKCMHEK-DVVSWSSMIAGFCFNHR--NFEALYYFRHMLADVKPN 490



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 105/355 (29%), Positives = 186/355 (52%), Gaps = 5/355 (1%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G      +LI+ Y   G++ +ART+F  M  RD ++WT MI+GY      ++A  V+  M
Sbjct: 323 GDVAFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMISGYEKNGFPDKALEVYALM 382

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
             N V+P+  T++S L AC  + SL     +H +A  +G    I V N+++++YA     
Sbjct: 383 EVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFISYIVVTNAILEMYAK-SKR 441

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +D A  VF  M  K+ VSW+++I G+  +   +  L  F+ ML + V+ N  +F  A+ A
Sbjct: 442 IDKAIEVFKCMHEKDVVSWSSMIAGFCFNHRNFEALYYFRHMLAD-VKPNSVTFIAALAA 500

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           CA+TG +  GK IHA V++ G      + N+++D+Y +      A   F     KD+++W
Sbjct: 501 CAATGALRSGKEIHAHVLRCGIEYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSW 560

Query: 284 NTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQV-HAGIV 341
           N +IAG+   G  +  L+ F++M      P+  TF +++ AC+    +S G ++ H+   
Sbjct: 561 NIMIAGFVAHGHGDTALSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTE 620

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGH 395
           +  +  NL     ++D+ ++ G ++++    +EM    D   W +++ G   H H
Sbjct: 621 KYSIVPNLKHYACMVDLLSRAGQLTEAYNFINEMPITPDAAVWGALLNGCRIHRH 675



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 143/273 (52%), Gaps = 12/273 (4%)

Query: 249 LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKS 307
           L + N++L M  RF     A + F +M E+D+ +WN ++ GY KSG   E L+++ +M  
Sbjct: 123 LRLGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMW 182

Query: 308 ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISD 367
               P+ +TF  ++ +C  +     G++VHA ++R G    + + NAL+ MYAKCG++  
Sbjct: 183 AGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMA 242

Query: 368 SQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH 427
           ++K+F  M+  D ++W +M+ G+  +G     +ELF  M+   V+P+ +   +V  A   
Sbjct: 243 ARKVFDSMTVMDCISWNAMIAGHFENGECNAGLELFLTMLHDEVQPNLMTITSVTVA--- 299

Query: 428 AGLVDEGLKYFKSMNDYNVNPN--KEIYGC--VVDLLGRAGRVKEAYELIKSMPFKPDES 483
           +GL+ + + + K M+   V      ++  C  ++ +    G +++A  +   M  + D  
Sbjct: 300 SGLLSD-VTFAKEMHGLAVKRGFAGDVAFCNSLIQMYASLGMMRQARTVFSRMDTR-DAM 357

Query: 484 VWGPLLGACKEHRLPN--LGKLAALRVLDLKPN 514
            W  ++   +++  P+  L   A + V ++ P+
Sbjct: 358 TWTAMISGYEKNGFPDKALEVYALMEVNNVSPD 390



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 111/247 (44%), Gaps = 8/247 (3%)

Query: 305 MKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGN 364
           ++S    P+   + ++   C    A+  G +  A    R     L L NA++ M  + G 
Sbjct: 79  LESSAEPPDEDAYVALFRLCEWRRAVEPGLRACAHADDRHAWFGLRLGNAMLSMLVRFGE 138

Query: 365 ISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTA 424
              + ++F++M +RD+ +W  M+ GYG  G   EA++L+  M+ +GVRPD   F  VL +
Sbjct: 139 TWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMWAGVRPDVYTFPCVLRS 198

Query: 425 CSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESV 484
           C        G +    +  +      ++   ++ +  + G V  A ++  SM    D   
Sbjct: 199 CGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMAARKVFDSMTVM-DCIS 257

Query: 485 WGPLLGACKEHRLPNLGKLAALRVL--DLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIM 542
           W  ++    E+   N G    L +L  +++PN+M     ++++  A G   +   F K M
Sbjct: 258 WNAMIAGHFENGECNAGLELFLTMLHDEVQPNLM----TITSVTVASGLLSD-VTFAKEM 312

Query: 543 RGMGSKK 549
            G+  K+
Sbjct: 313 HGLAVKR 319


>gi|9279602|dbj|BAB01060.1| unnamed protein product [Arabidopsis thaliana]
          Length = 598

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 194/548 (35%), Positives = 306/548 (55%), Gaps = 6/548 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           ++  ++ SY   G +  A  LFDEMP+RD VSW  MI+GYTS      AW +F  M R+ 
Sbjct: 37  VSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKLEDAWCLFTCMKRSG 96

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
            + + ++ S +LK    +K       VHG+ IK G E ++YV +SL+D+YA C   +++A
Sbjct: 97  SDVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKC-ERVEDA 155

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG-VEMNPYSFSIAVRACAS 226
              F ++   N VSW  LI G+    +      +   M ++  V M+  +F+  +     
Sbjct: 156 FEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLLTLLDD 215

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLITWNT 285
             + +  K +HA V+K G    + + N+++  Y     +SDA + FD +   KDLI+WN+
Sbjct: 216 PMFCNLLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKDLISWNS 275

Query: 286 IIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +IAG+ + G SE  +  FS ++S     + + F++++ +C+ LA L  GQQ+HA   + G
Sbjct: 276 MIAGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLATLQLGQQIHALATKSG 335

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHGHGKEAIELF 403
              N  + ++LI MY+KCG I  ++K F ++S +   V W +M++GY  HG G+ +++LF
Sbjct: 336 FVSNEFVISSLIVMYSKCGIIESARKCFQQISSKHSTVAWNAMILGYAQHGLGQVSLDLF 395

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGR 462
            +M    V+ D + F A+LTACSH GL+ EGL+    M   Y + P  E Y   VDLLGR
Sbjct: 396 SQMCNQNVKLDHVTFTAILTACSHTGLIQEGLELLNLMEPVYKIQPRMEHYAAAVDLLGR 455

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AG V +A ELI+SMP  PD  V    LG C+      +    A  +L+++P    TY+ L
Sbjct: 456 AGLVNKAKELIESMPLNPDPMVLKTFLGVCRACGEIEMATQVANHLLEIEPEDHFTYVSL 515

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           S++Y+   KWEE A  +K+M+  G KK  G SWIE+R++V  F A D+     Q +Y ++
Sbjct: 516 SHMYSDLKKWEEKASVKKMMKERGVKKVPGWSWIEIRNQVKAFNAEDRSNPLCQDIYMMI 575

Query: 583 EMLIRHMN 590
           + L + M 
Sbjct: 576 KDLTQEMQ 583



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 105/398 (26%), Positives = 201/398 (50%), Gaps = 13/398 (3%)

Query: 132 ALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAH 191
           +L H  AIK G    IYV N ++D Y      +  A ++F++M  ++ VSW T+I+GY  
Sbjct: 20  SLTHCYAIKCGSISDIYVSNRILDSYIKFGF-LGYANMLFDEMPKRDSVSWNTMISGYTS 78

Query: 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251
            G       +F  M   G +++ YSFS  ++  AS      G+ +H  VIK G+  N+ V
Sbjct: 79  CGKLEDAWCLFTCMKRSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYV 138

Query: 252 MNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS---GSSECLNMFSKMKSE 308
            +S++DMY + + + DA + F E++E + ++WN +IAG+ +     ++  L    +MK+ 
Sbjct: 139 GSSLVDMYAKCERVEDAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAA 198

Query: 309 RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDS 368
             + +  TF  ++         +  +QVHA +++ GL   + + NA+I  YA CG++SD+
Sbjct: 199 -VTMDAGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDA 257

Query: 369 QKIFSEM-SDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH 427
           +++F  +   +DL++W SM+ G+   G  ++A++ F  +  S ++ D   F A+L +CS 
Sbjct: 258 KRVFDGLGGSKDLISWNSMIAGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSD 317

Query: 428 AGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGP 487
              +  G +            N+ +   ++ +  + G ++ A +  + +  K     W  
Sbjct: 318 LATLQLGQQIHALATKSGFVSNEFVISSLIVMYSKCGIIESARKCFQQISSKHSTVAWNA 377

Query: 488 LLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           ++    +H    LG+++    LDL   M    + L ++
Sbjct: 378 MILGYAQH---GLGQVS----LDLFSQMCNQNVKLDHV 408


>gi|224065397|ref|XP_002301797.1| predicted protein [Populus trichocarpa]
 gi|222843523|gb|EEE81070.1| predicted protein [Populus trichocarpa]
          Length = 602

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 194/560 (34%), Positives = 318/560 (56%), Gaps = 12/560 (2%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           +I SY   G I  AR LFD++P+R V +W  MI  Y+      +   ++ +MV     P+
Sbjct: 46  VIASYARIGGITSARHLFDKLPQRGVDAWNAMIVAYSRRYHLTEVLNLYHQMVNEGGKPD 105

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
           + T +  +KA   +K L     +   A+  G    ++V +S++++Y  C   +D A+LVF
Sbjct: 106 SSTFTVAIKASSSLKDLEAGERIWRRAVDFGYGCDVFVGSSVLNLYVKCG-KIDEAKLVF 164

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           + M  ++ V W T+ITG   +GN    + +F+ M  EG+E +       V+ACA+ G + 
Sbjct: 165 DKMVKRDVVCWATMITGLVQNGNVLEAVDMFRRMRKEGIEGDGVLMLGLVQACANLGELK 224

Query: 232 FGKLIHA-AVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
            G  +H  AV +     ++ +  S++DMY +   L  A++ F++M  K+ ++W  +I+G+
Sbjct: 225 LGLSVHGHAVRREMLMDDVILQTSLVDMYAKIGDLELASRVFEQMPRKNAVSWGALISGF 284

Query: 291 EKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
            ++G +E  L++  +M+S  F P+     S + AC+ +  L  G+ +H  IVRR L   L
Sbjct: 285 AQNGFAEYALDLLVEMQSLEFKPDTAVLVSALLACSQVGHLKLGKSIHGYIVRR-LGFEL 343

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
            L  ALIDMYAKCG++S +  IF  +  RD++ W +M+  YG HG GKE + LF +M ++
Sbjct: 344 VLGTALIDMYAKCGSLSCAHAIFDRVDSRDVILWNTMIASYGIHGDGKEVLSLFLKMKEA 403

Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKE 468
            + PD   F ++L+A SH+G VD G  +F +M N+  + P+++ Y C+VDL  RAGRV+E
Sbjct: 404 NISPDHATFASLLSALSHSGQVDVGQYWFNAMVNECKIPPSEKHYACMVDLFSRAGRVEE 463

Query: 469 AYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA 528
           AY+LI+SM  +P  ++W  LL  C  +R    G++AA ++LDL P+ +G Y ++SN ++ 
Sbjct: 464 AYQLIESMNTEPGLAIWVALLSGCHNYRNLLFGEVAAKKILDLNPDDLGIYALVSNFFSL 523

Query: 529 EGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQY--VYGVLEMLI 586
              W+  +  RKIM+  G KK  G S +EV  K   F+  DK  +H QY  +  +L+ L 
Sbjct: 524 ARMWDRVSILRKIMKETGMKKVPGYSAVEVNGKHEAFLVEDK--NHHQYEEILQMLDSLD 581

Query: 587 RHMNETAYEPDIDCLIHDLE 606
             M    + PD    +HD+E
Sbjct: 582 NEMRVIRHVPDS---LHDVE 598



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 180/348 (51%), Gaps = 10/348 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + ++++  Y   G I+EA+ +FD+M +RDVV W  MI G        +A  +F  M +  
Sbjct: 143 VGSSVLNLYVKCGKIDEAKLVFDKMVKRDVVCWATMITGLVQNGNVLEAVDMFRRMRKEG 202

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAI-KEGLEGSIYVENSLMDVYATCCISMDN 166
           +  +   +  +++AC  +  L     VHG A+ +E L   + ++ SL+D+YA     ++ 
Sbjct: 203 IEGDGVLMLGLVQACANLGELKLGLSVHGHAVRREMLMDDVILQTSLVDMYAKIG-DLEL 261

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI--AVRAC 224
           A  VF  M  KN VSW  LI+G+A +G     L +  EM  + +E  P +  +  A+ AC
Sbjct: 262 ASRVFEQMPRKNAVSWGALISGFAQNGFAEYALDLLVEM--QSLEFKPDTAVLVSALLAC 319

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           +  G +  GK IH  +++   G  L +  +++DMY +   LS A+  FD +  +D+I WN
Sbjct: 320 SQVGHLKLGKSIHGYIVRR-LGFELVLGTALIDMYAKCGSLSCAHAIFDRVDSRDVILWN 378

Query: 285 TIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           T+IA Y   G   E L++F KMK    SP+  TF S+++A +    +  GQ     +V  
Sbjct: 379 TMIASYGIHGDGKEVLSLFLKMKEANISPDHATFASLLSALSHSGQVDVGQYWFNAMVNE 438

Query: 344 -GLDGNLALANALIDMYAKCGNISDSQKIFSEM-SDRDLVTWTSMMIG 389
             +  +      ++D++++ G + ++ ++   M ++  L  W +++ G
Sbjct: 439 CKIPPSEKHYACMVDLFSRAGRVEEAYQLIESMNTEPGLAIWVALLSG 486



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 156/297 (52%), Gaps = 9/297 (3%)

Query: 236 IHAAVIKHG-FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG 294
           IHA +I  G F +N      ++  Y R   ++ A   FD++ ++ +  WN +I  Y +  
Sbjct: 26  IHALIITTGLFFANSNFNGLVIASYARIGGITSARHLFDKLPQRGVDAWNAMIVAYSRRY 85

Query: 295 S-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353
             +E LN++ +M +E   P+  TFT  I A ++L  L  G+++    V  G   ++ + +
Sbjct: 86  HLTEVLNLYHQMVNEGGKPDSSTFTVAIKASSSLKDLEAGERIWRRAVDFGYGCDVFVGS 145

Query: 354 ALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP 413
           +++++Y KCG I +++ +F +M  RD+V W +M+ G   +G+  EA+++F  M K G+  
Sbjct: 146 SVLNLYVKCGKIDEAKLVFDKMVKRDVVCWATMITGLVQNGNVLEAVDMFRRMRKEGIEG 205

Query: 414 DRIVFMAVLTACSHAGLVDEGLK-YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
           D ++ + ++ AC++ G +  GL  +  ++    +  +  +   +VD+  + G ++ A  +
Sbjct: 206 DGVLMLGLVQACANLGELKLGLSVHGHAVRREMLMDDVILQTSLVDMYAKIGDLELASRV 265

Query: 473 IKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNMMGTYIILSNIYA 527
            + MP K   S WG L+    ++      L  L  ++ L+ KP+   T +++S + A
Sbjct: 266 FEQMPRKNAVS-WGALISGFAQNGFAEYALDLLVEMQSLEFKPD---TAVLVSALLA 318



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 120/249 (48%), Gaps = 12/249 (4%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           IL T+L+  Y   G +E A  +F++MP ++ VSW  +I+G+        A  + VEM   
Sbjct: 244 ILQTSLVDMYAKIGDLELASRVFEQMPRKNAVSWGALISGFAQNGFAEYALDLLVEMQSL 303

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKE-GLEGSIYVENSLMDVYATCCISMD 165
           E  P+   L S L AC  +  L     +HG  ++  G E  + +  +L+D+YA C  S+ 
Sbjct: 304 EFKPDTAVLVSALLACSQVGHLKLGKSIHGYIVRRLGFE--LVLGTALIDMYAKCG-SLS 360

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A  +F+ +  ++ + W T+I  Y   G+G   L +F +M    +  +  +F+  + A +
Sbjct: 361 CAHAIFDRVDSRDVILWNTMIASYGIHGDGKEVLSLFLKMKEANISPDHATFASLLSALS 420

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNS----ILDMYCRFDCLSDANQYFDEM-TEKDL 280
            +G V  G+    A++       +P        ++D++ R   + +A Q  + M TE  L
Sbjct: 421 HSGQVDVGQYWFNAMVNE---CKIPPSEKHYACMVDLFSRAGRVEEAYQLIESMNTEPGL 477

Query: 281 ITWNTIIAG 289
             W  +++G
Sbjct: 478 AIWVALLSG 486


>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 198/582 (34%), Positives = 331/582 (56%), Gaps = 21/582 (3%)

Query: 22  IKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWT 81
           IK+    + K ++ +D  + PK        LI ++     +  A  +F+++ + +V  + 
Sbjct: 39  IKEVHAQIIKRNLHNDLYVAPK--------LISAFSLCHQMNLAVNVFNQIQDPNVHLYN 90

Query: 82  VMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKE 141
            +I  +   +   +A+  F +M +N +  + FT   +LKAC G   L    ++H    K 
Sbjct: 91  TLIRAHVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKY 150

Query: 142 GLEGSIYVENSLMDVYATC-CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLG 200
           G  G ++V NSL+D Y+ C  + ++ A  +F +M  K+ VSW ++I G   +G+    LG
Sbjct: 151 GFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGD----LG 206

Query: 201 VFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHA-AVIKHGFGSNLPVMNSILDMY 259
             +++  E  E +  S++  +      G+V  G++  A  + +     N+   ++++  Y
Sbjct: 207 RARKLFDEMAERDAVSWNTIL-----DGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGY 261

Query: 260 CRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFT 318
           C+   +  A   FD+M  K+L+TW  II+G+ EK  + E   ++++M++    P+  T  
Sbjct: 262 CKTGDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLI 321

Query: 319 SIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR 378
           SI+AACA    L  G++VHA I +  +  ++ ++NAL+DMYAKCG +  +  IF+EMS R
Sbjct: 322 SILAACAESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMR 381

Query: 379 DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYF 438
           DLV+W  M+ G   HGHG++AI+LF +M + G +PD++  +A+L AC+HAG VD+GL YF
Sbjct: 382 DLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYF 441

Query: 439 KSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
            SM  D+ + P+ E YGC++DLLGR GR++EA+ L++SMP +P++ +WG LLGAC+ H  
Sbjct: 442 NSMERDHGIVPHIEHYGCMIDLLGRGGRLEEAFRLVQSMPMEPNDVIWGTLLGACRVHNA 501

Query: 498 PNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIE 557
             L +    R++ L+ +  G Y +LSNI+AA G W   A  R  M+  G +K  G S IE
Sbjct: 502 VPLAEKVLDRLITLEQSDPGNYSMLSNIFAAAGDWNSVANMRLQMKSTGVQKPSGASSIE 561

Query: 558 VRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDID 599
           + D+V  F   DK    T  +Y +L  L + + + AY P+ D
Sbjct: 562 LDDEVHEFTVFDKSHPETDKIYQILVKLGQDLKQVAYAPEAD 603


>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
          Length = 852

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 176/560 (31%), Positives = 326/560 (58%), Gaps = 5/560 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A  L+  Y     +++   LF  MP  D+V+W  MI+G       +QA  +F +M ++ 
Sbjct: 284 VANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSG 343

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + P++ TL S+L A   +   +    +HG  ++  +   +++ ++L+D+Y  C  ++  A
Sbjct: 344 IRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKC-RAVRMA 402

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           + V++  K  + V  +T+I+GY  +G     + +F+ +L +G+  N  + +  + ACAS 
Sbjct: 403 QSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASM 462

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  G+ +H+  +K+ +     V ++++DMY +   L  ++  F +++ KD +TWN++I
Sbjct: 463 AAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMI 522

Query: 288 AGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           + + ++G   E LN+F +M  E    +  T +S+++ACA+L A+  G+++H  +++  + 
Sbjct: 523 SSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIR 582

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            +L   +ALIDMY KCGN+  + ++F  M +++ V+W S++  YGA+G  KE++ L   M
Sbjct: 583 ADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHM 642

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGR 465
            + G + D + F+A+++AC+HAG V EGL+ F+ M  +Y + P  E + C+VDL  RAG+
Sbjct: 643 QEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGK 702

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           + +A ELI  MPFKPD  +WG LL AC+ HR   L ++A+  +  L P+  G Y+++SNI
Sbjct: 703 LDKAMELIVDMPFKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNI 762

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
            A  G+W+  +K R++M+    +K  G SW++V +    F+A DK    ++ +Y  L+ +
Sbjct: 763 NAVAGRWDGVSKVRRLMKDTKVQKIPGYSWVDVNNTSHLFVAADKSHPDSEDIYMSLKSI 822

Query: 586 IRHMNETAY--EPDIDCLIH 603
           +  + E  Y   PD+ C  H
Sbjct: 823 LLELREEGYIPMPDLCCPTH 842



 Score =  215 bits (547), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 128/449 (28%), Positives = 234/449 (52%), Gaps = 3/449 (0%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   + + LIK Y + GL+ +AR +FD M ERD V W VM+ GY      + A  +F +M
Sbjct: 179 GDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDM 238

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
             +   PN  TL+  L        L     +H +A+K GLE  + V N+L+ +YA  C  
Sbjct: 239 RASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAK-CKC 297

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +D+   +F  M   + V+W  +I+G   +G     L +F +M   G+  +  +    + A
Sbjct: 298 LDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPA 357

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
                  + GK +H  ++++    ++ ++++++D+Y +   +  A   +D     D++  
Sbjct: 358 LTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIG 417

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           +T+I+GY  +G S E + MF  +  +   PN     S++ ACA++AA+  GQ++H+  ++
Sbjct: 418 STMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALK 477

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
              +G   + +AL+DMYAKCG +  S  IFS++S +D VTW SM+  +  +G  +EA+ L
Sbjct: 478 NAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNL 537

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           F EM   GV+   +   +VL+AC+    +  G +    +    +  +      ++D+ G+
Sbjct: 538 FREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGK 597

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGA 491
            G ++ A+ + +SMP K +E  W  ++ +
Sbjct: 598 CGNLEWAHRVFESMPEK-NEVSWNSIIAS 625



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 117/463 (25%), Positives = 231/463 (49%), Gaps = 16/463 (3%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDV---VSWTVMIAGYTSFNCHNQAWTVFVE 102
           + L T L+  Y       +A  +F  +P       + W  +I G T    +  A   +++
Sbjct: 75  TALQTRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLK 134

Query: 103 MVRNEVNP--NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
           M  +   P  ++ T   V+K+C  + +++   LVH  A   GL+G ++V ++L+ +YA  
Sbjct: 135 MWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANG 194

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
            +  D AR VF+ M  ++ V W  ++ GY  +G+    + +F +M   G E N  + +  
Sbjct: 195 GLLWD-ARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACF 253

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           +   A+   + FG  +H   +K+G  S + V N+++ MY +  CL D  + F  M   DL
Sbjct: 254 LSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDL 313

Query: 281 ITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           +TWN +I+G  ++G   + L +F  M+     P+  T  S++ A   L   + G+++H  
Sbjct: 314 VTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGY 373

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
           IVR  +  ++ L +AL+D+Y KC  +  +Q ++      D+V  ++M+ GY  +G  +EA
Sbjct: 374 IVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEA 433

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE----IYGC 455
           +++F  +++ G+RP+ +   +VL AC+        +K  + ++ Y +    E    +   
Sbjct: 434 VKMFRYLLEQGIRPNAVAIASVLPACASMA----AMKLGQELHSYALKNAYEGRCYVESA 489

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLP 498
           ++D+  + GR+  ++ +   +  K DE  W  ++ +  ++  P
Sbjct: 490 LMDMYAKCGRLDLSHYIFSKISAK-DEVTWNSMISSFAQNGEP 531



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 108/351 (30%), Positives = 173/351 (49%), Gaps = 25/351 (7%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGS-IYVENSLMDVYATCCISMDNARLVFND 173
           L +VL+ C     LS    VHG A+  GL  +   ++  L+ +Y        +A  VF+ 
Sbjct: 42  LLAVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMY-VLARRFRDAVAVFSS 100

Query: 174 MKWKND---VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP--YSFSIAVRACASTG 228
           +        + W  LI G   +G+    L  + +M        P  ++F   V++CA+ G
Sbjct: 101 LPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALG 160

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            ++ G+L+H      G   ++ V ++++ MY     L DA Q FD M E+D + WN ++ 
Sbjct: 161 AIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMD 220

Query: 289 GYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           GY K+GS S  + +F  M++    PN  T    ++  AT + L  G Q+H   V+ GL+ 
Sbjct: 221 GYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLES 280

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
            +A+AN L+ MYAKC  + D  K+F  M   DLVTW  M+ G   +G   +A+ LF +M 
Sbjct: 281 EVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQ 340

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYN-VNPNKEIYGCVV 457
           KSG+RPD +  +++L A                + D N  N  KE++G +V
Sbjct: 341 KSGIRPDSVTLVSLLPA----------------LTDLNGFNQGKELHGYIV 375



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 127/282 (45%), Gaps = 8/282 (2%)

Query: 221 VRACASTGWVSFGKLIHAAVIKHGF-GSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
           +R C S   +S G  +H   +  G   ++  +   ++ MY       DA   F  +    
Sbjct: 46  LRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRGA 105

Query: 280 L---ITWNTIIAGYEKSGS-SECLNMFSKMKSERFSP--NCFTFTSIIAACATLAALSCG 333
               + WN +I G   +G     L  + KM +   +P  +  TF  ++ +CA L A++ G
Sbjct: 106 AACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALG 165

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
           + VH      GLDG++ + +ALI MYA  G + D++++F  M++RD V W  MM GY   
Sbjct: 166 RLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKA 225

Query: 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIY 453
           G    A+ELF +M  SG  P+       L+  +    +  G++       Y +     + 
Sbjct: 226 GSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVA 285

Query: 454 GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
             +V +  +   + + ++L   MP + D   W  ++  C ++
Sbjct: 286 NTLVSMYAKCKCLDDGWKLFGLMP-RDDLVTWNGMISGCVQN 326



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 117/247 (47%), Gaps = 3/247 (1%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           +G   + + L+  Y   G ++ +  +F ++  +D V+W  MI+ +       +A  +F E
Sbjct: 481 EGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFRE 540

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M    V  +  T+SSVL AC  + ++     +HG+ IK  +   ++ E++L+D+Y  C  
Sbjct: 541 MCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCG- 599

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
           +++ A  VF  M  KN+VSW ++I  Y   G     + + + M  EG + +  +F   V 
Sbjct: 600 NLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVS 659

Query: 223 ACASTGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DL 280
           ACA  G V  G +L      ++     +     ++D+Y R   L  A +   +M  K D 
Sbjct: 660 ACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDA 719

Query: 281 ITWNTII 287
             W  ++
Sbjct: 720 GIWGALL 726


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 195/578 (33%), Positives = 316/578 (54%), Gaps = 34/578 (5%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           A ++F+ + E +++ W  M  G+   +    A  ++V M+   + PN +T   +LK+C  
Sbjct: 56  AISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAK 115

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA-----------------------TCC 161
            K+      +HG  +K G +  +YV  SL+ +Y                        T  
Sbjct: 116 SKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTAL 175

Query: 162 IS-------MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP 214
           I+       + +A+ +F+++  K+ VSW  +I+GYA +GN    L +FKEM+   V  + 
Sbjct: 176 ITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDE 235

Query: 215 YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE 274
            +    V ACA +  +  G+ +H+ +  HGFGSNL ++N+++D+Y +   +  A   F+ 
Sbjct: 236 STMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEG 295

Query: 275 MTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG 333
           ++ KD+I+WNT+I GY       E L +F +M     SPN  T  SI+ ACA L A+  G
Sbjct: 296 LSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIG 355

Query: 334 QQVHAGIVRR--GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG 391
           + +H  I +R  G+    +   +LIDMYAKCG+I  +Q++F  + +R L +W +M+ G+ 
Sbjct: 356 RWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFA 415

Query: 392 AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNK 450
            HG    A ++F  M K+ + PD I F+ +L+ACSH+G++D G   F+SM  DY + P  
Sbjct: 416 MHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKL 475

Query: 451 EIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD 510
           E YGC++DLLG +G  KEA E+I +M  +PD  +W  LL ACK +    LG+  A  ++ 
Sbjct: 476 EHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIK 535

Query: 511 LKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDK 570
           ++P   G+Y++LSNIYA  G+W E AK R ++   G KK  G S IE+   V  FI  DK
Sbjct: 536 IEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDK 595

Query: 571 MGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
                + +YG+LE +   + E  + PD   ++ ++E E
Sbjct: 596 FHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEE 633



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 171/343 (49%), Gaps = 6/343 (1%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T LI  Y  +G I  A+ +FDE+P +DVVSW  MI+GY     + +A  +F EM++  V 
Sbjct: 173 TALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVR 232

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P+  T+ SV+ AC    S+     VH      G   ++ + N+L+D+Y  C   ++ A  
Sbjct: 233 PDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCG-EVETACG 291

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           +F  + +K+ +SW TLI GY H       L +F+EML  G   N  +    + ACA  G 
Sbjct: 292 LFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGA 351

Query: 230 VSFGKLIHAAVIKH--GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
           +  G+ IH  + K   G  +      S++DMY +   +  A Q FD +  + L +WN +I
Sbjct: 352 IEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMI 411

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-GL 345
            G+   G ++   ++FS+M+     P+  TF  +++AC+    L  G+ +   +     +
Sbjct: 412 FGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKI 471

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMM 387
              L     +ID+    G   +++++ + M  + D V W S++
Sbjct: 472 TPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLL 514



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 149/294 (50%), Gaps = 38/294 (12%)

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYC----RFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           ++IHA +IK G  +    ++ +++ +C     FD L  A   F+ + E +L+ WNT+  G
Sbjct: 19  RMIHAQMIKTGLHNTNYALSKLIE-FCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRG 77

Query: 290 YEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           +  S      L ++  M S    PNC+TF  ++ +CA   A   GQQ+H  +++ G D +
Sbjct: 78  HALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLD 137

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDR------------------------------ 378
           L +  +LI MY + G + D++K+F + S R                              
Sbjct: 138 LYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPI 197

Query: 379 -DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY 437
            D+V+W +M+ GY   G+ KEA+ELF EM+K+ VRPD    ++V++AC+ +  ++ G + 
Sbjct: 198 KDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQV 257

Query: 438 FKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
              ++D+    N +I   ++DL  + G V+ A  L + + +K D   W  L+G 
Sbjct: 258 HSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYK-DVISWNTLIGG 310


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 176/554 (31%), Positives = 323/554 (58%), Gaps = 3/554 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A  L+  Y     +++A  LF+ MP+ D+V+W  MI+G        +A+ +F +M R+ 
Sbjct: 279 VANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSG 338

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
             P++ TL S+L A   +  L     VHG  ++  +   +++ ++L+D+Y  C   +  A
Sbjct: 339 ARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKC-RDVRMA 397

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           + +++  +  + V  +T+I+GY  +G     L +F+ +L + ++ N  + +  +  CAS 
Sbjct: 398 QNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASM 457

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  G+ IH  V+++ +     V ++++DMY +   L  ++  F +M++KD +TWN++I
Sbjct: 458 AALPLGQQIHGYVLRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMI 517

Query: 288 AGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           + + ++G   E L++F +M  E    N  T ++ ++ACA+L A+  G+++H   ++  + 
Sbjct: 518 SSFSQNGKPQEALDLFRQMCMEGIKYNNITISAALSACASLPAIYYGKEIHGVTIKGPIK 577

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            ++   +ALIDMYAKCGN+  + ++F  M D++ V+W S++  YGAHG  KE++ L   M
Sbjct: 578 ADIFAESALIDMYAKCGNLELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSLLHGM 637

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGR 465
            + G +PD + F+A+++AC+HAGLV+EG++ F+ M   Y + P  E + C+VDL  R+G+
Sbjct: 638 QEEGYKPDHVTFLALISACAHAGLVEEGVQLFQCMTKKYLIAPRMEHFACMVDLYSRSGK 697

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           + +A + I  MPFKPD  +WG LL AC+ HR   L  +A+  +  L P   G Y+++SNI
Sbjct: 698 LDKAIQFIADMPFKPDAGIWGALLHACRVHRNVELADIASQELFKLDPANSGYYVLMSNI 757

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
            A  G+W+  +K R++M+     K  G SW++V +    F+A+DK    ++ +Y  L+ L
Sbjct: 758 NAVAGRWDGVSKVRRLMKDNKILKIPGYSWVDVNNSSHLFVASDKSHPESEDIYTSLKTL 817

Query: 586 IRHMNETAYEPDID 599
           ++ + E  Y P  D
Sbjct: 818 LQELREEGYVPRPD 831



 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 146/502 (29%), Positives = 257/502 (51%), Gaps = 14/502 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + + L+K Y D GL+  AR  FD +PERD V W VM+ G       + A  +F  M  + 
Sbjct: 178 VGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRASG 237

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
             PN  TL+  L  C     L + A +H +A+K GLE  + V N+L+ +YA  C  +D+A
Sbjct: 238 CEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAK-CQCLDDA 296

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             +F  M   + V+W  +I+G   +G      G+F +M   G   +  +    + A    
Sbjct: 297 WRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDL 356

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  GK +H  ++++    ++ ++++++D+Y +   +  A   +D     D++  +T+I
Sbjct: 357 NGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMI 416

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           +GY  +G S E L MF  +  +   PN  T  S++  CA++AAL  GQQ+H  ++R   +
Sbjct: 417 SGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYE 476

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
               + +AL+DMYAKCG +  S  IF +MS +D VTW SM+  +  +G  +EA++LF +M
Sbjct: 477 RKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQEALDLFRQM 536

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN-PNK-EIYG--CVVDLLGR 462
              G++ + I   A L+AC+        + Y K ++   +  P K +I+    ++D+  +
Sbjct: 537 CMEGIKYNNITISAALSACASL----PAIYYGKEIHGVTIKGPIKADIFAESALIDMYAK 592

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL--PNLGKLAALRVLDLKPNMMGTYI 520
            G ++ A  + + MP K +E  W  ++ A   H L   ++  L  ++    KP+ + T++
Sbjct: 593 CGNLELALRVFEFMPDK-NEVSWNSIISAYGAHGLVKESVSLLHGMQEEGYKPDHV-TFL 650

Query: 521 ILSNIYAAEGKWEEFAKFRKIM 542
            L +  A  G  EE  +  + M
Sbjct: 651 ALISACAHAGLVEEGVQLFQCM 672



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 120/458 (26%), Positives = 230/458 (50%), Gaps = 8/458 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVS---WTVMIAGYTSFNCHNQAWTVFVEMV 104
           L T L+  Y       +A  +F  +P     S   W  +I G+T+   H+ A   +V+M 
Sbjct: 72  LHTRLLGMYVLARRFRDAVAVFSALPRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMW 131

Query: 105 RNEV--NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
            +    +P+A TL  V+K+C  + ++S   LVH  A   GL   +YV ++L+ +YA   +
Sbjct: 132 SHPAAPSPDAHTLPYVVKSCAALGAMSLGRLVHRTARAIGLANDVYVGSALVKMYADAGL 191

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            + NAR  F+ +  ++ V W  ++ G   +G+  G + +F+ M   G E N  + +  + 
Sbjct: 192 -LGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLS 250

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
            CA+   +  G  +H+  +K G    + V N++L MY +  CL DA + F+ M + DL+T
Sbjct: 251 VCATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVT 310

Query: 283 WNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           WN +I+G  ++G   E   +F  M+     P+  T  S++ A   L  L  G++VH  IV
Sbjct: 311 WNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIV 370

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           R  ++ ++ L +AL+D+Y KC ++  +Q ++      D+V  ++M+ GY  +G  +EA++
Sbjct: 371 RNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQ 430

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461
           +F  +++  ++P+ +   +VL  C+    +  G +    +          +   ++D+  
Sbjct: 431 MFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYERKCYVESALMDMYA 490

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN 499
           + GR+  ++ +   M  K DE  W  ++ +  ++  P 
Sbjct: 491 KCGRLDLSHYIFLKMSQK-DEVTWNSMISSFSQNGKPQ 527



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 107/376 (28%), Positives = 183/376 (48%), Gaps = 20/376 (5%)

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGL---EGSIYVENSLMDVYATCCISMDNA 167
           +A  L +VL+ C     L     +H  A+  G       + +   L+ +Y        +A
Sbjct: 31  SADRLLAVLRGCVSAPHLPLGLQIHARAVVSGALSDHNHLALHTRLLGMY-VLARRFRDA 89

Query: 168 RLVFNDMKWK---NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP--YSFSIAVR 222
             VF+ +      + + W  LI G+  +G  +  +  + +M       +P  ++    V+
Sbjct: 90  VAVFSALPRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVK 149

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           +CA+ G +S G+L+H      G  +++ V ++++ MY     L +A   FD + E+D + 
Sbjct: 150 SCAALGAMSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVL 209

Query: 283 WNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           WN ++ G  K+G  +  + +F  M++    PN  T    ++ CAT A L  G Q+H+  V
Sbjct: 210 WNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAV 269

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           + GL+  +A+AN L+ MYAKC  + D+ ++F  M   DLVTW  M+ G   +G   EA  
Sbjct: 270 KCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFG 329

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVD-EGLKYFKSMNDY----NVNPNKEIYGCV 456
           LF +M +SG RPD I  +++L A     L D  GLK  K ++ Y     VN +  +   +
Sbjct: 330 LFYDMQRSGARPDSITLVSLLPA-----LTDLNGLKQGKEVHGYIVRNCVNMDVFLVSAL 384

Query: 457 VDLLGRAGRVKEAYEL 472
           VD+  +   V+ A  L
Sbjct: 385 VDIYFKCRDVRMAQNL 400


>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 959

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 193/559 (34%), Positives = 312/559 (55%), Gaps = 27/559 (4%)

Query: 29  VKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYT 88
           V +S  +SDP         +A  +I  Y   G + +AR +FD MP+ D V+W  +IAGY 
Sbjct: 304 VIRSGFESDP--------TVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYV 355

Query: 89  SFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIY 148
                ++A  +F  MV + V  ++ T +S L +     SL     VH   ++ G+   +Y
Sbjct: 356 QNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYIVRHGVPFDVY 415

Query: 149 VENSLMDVY------ATCCISMDNARLVFNDMKWKNDVS-WTTLITGYAHSGNGYGGLGV 201
           ++++L+D+Y         C +     LV        DV+  T +I+GY  +G     L +
Sbjct: 416 LKSALVDIYFKGGDVEMACKTFQQNTLV--------DVAVCTAMISGYVLNGLNVEALNL 467

Query: 202 FKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR 261
           F+ ++ EG+  N  + +  + ACA+   +  GK +H  ++K G  +   V +SI  MY +
Sbjct: 468 FRWLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDILKKGLENVCQVGSSITYMYAK 527

Query: 262 FDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSI 320
              L  A Q+F  M  KD + WN +I  + ++G  E  +++F +M +     +  + ++ 
Sbjct: 528 SGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSAT 587

Query: 321 IAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDL 380
           ++ACA   AL  G+++H  +VR     +  +A+ LIDMY+KCG ++ ++ +F  M  ++ 
Sbjct: 588 LSACANYPALYYGKELHCFVVRNSFISDTFVASTLIDMYSKCGKLALARSVFDMMDWKNE 647

Query: 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS 440
           V+W S++  YG HG  +E ++LF EMV++G++PD + F+ +++AC HAGLVDEG+ YF+ 
Sbjct: 648 VSWNSIIAAYGNHGRPRECLDLFHEMVEAGIQPDHVTFLVIMSACGHAGLVDEGIYYFRC 707

Query: 441 MND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN 499
           M + Y +    E + C+VDL GRAGR+ EA++ IKSMPF PD   WG LLGAC+ H    
Sbjct: 708 MTEEYGICARMEHFACMVDLYGRAGRLHEAFDTIKSMPFTPDAGTWGSLLGACRLHGNVE 767

Query: 500 LGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVR 559
           L KLA+  +++L PN  G Y++LSN++A  G+WE   K R +M+  G +K  G SWI+V 
Sbjct: 768 LAKLASKHLVELDPNNSGYYVLLSNVHAGAGEWESVLKVRSLMKEKGVQKIPGYSWIDVN 827

Query: 560 DKVCGFIANDKMGSHTQYV 578
                F A D  G H Q V
Sbjct: 828 GGTHMFSAAD--GCHPQSV 844



 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 130/457 (28%), Positives = 242/457 (52%), Gaps = 11/457 (2%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + ++LIK Y D G I +A+ LFDE+P RD + W VM+ GY      N A   F EM  +
Sbjct: 213 FIGSSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNS 272

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V PN+ +   +L  C     +     +HG+ I+ G E    V N+++ +Y+ C  ++ +
Sbjct: 273 CVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKCG-NLFD 331

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR +F+ M   + V+W  LI GY  +G     + +FK M+  GV+++  +F+  + +   
Sbjct: 332 ARKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLK 391

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
           +G + + K +H+ +++HG   ++ + ++++D+Y +   +  A + F + T  D+     +
Sbjct: 392 SGSLKYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAM 451

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+GY  +G + E LN+F  +  E   PNC T  S++ ACA LA+L  G+++H  I+++GL
Sbjct: 452 ISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDILKKGL 511

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           +    + +++  MYAK G +  + + F  M  +D V W  M++ +  +G  + AI+LF +
Sbjct: 512 ENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPELAIDLFRQ 571

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN----PNKEIYGCVVDLLG 461
           M  SG + D +   A L+AC++       L Y K ++ + V      +  +   ++D+  
Sbjct: 572 MGTSGTKFDSVSLSATLSACANY----PALYYGKELHCFVVRNSFISDTFVASTLIDMYS 627

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLP 498
           + G++  A  +   M +K +E  W  ++ A   H  P
Sbjct: 628 KCGKLALARSVFDMMDWK-NEVSWNSIIAAYGNHGRP 663



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 124/459 (27%), Positives = 234/459 (50%), Gaps = 3/459 (0%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   L + ++  Y      ++   LF  +     + W  +I G++   C + A   F  M
Sbjct: 109 GSLTLGSRMLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGFSMLGCFDFALMFFFRM 168

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           + + V P+ +T   V+KAC G+ ++    +VH +A   G    +++ +SL+ +Y T    
Sbjct: 169 LGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHELARSMGFHMDLFIGSSLIKLY-TDNGY 227

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           + +A+ +F+++  ++ + W  ++ GY  +G+    LG F+EM    V+ N  SF   +  
Sbjct: 228 IHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSV 287

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           CA+ G V  G  +H  VI+ GF S+  V N+I+ MY +   L DA + FD M + D +TW
Sbjct: 288 CATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTW 347

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N +IAGY ++G + E + +F  M +     +  TF S + +     +L   ++VH+ IVR
Sbjct: 348 NGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYIVR 407

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            G+  ++ L +AL+D+Y K G++  + K F + +  D+   T+M+ GY  +G   EA+ L
Sbjct: 408 HGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGYVLNGLNVEALNL 467

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           F  +++ G+ P+ +   +VL AC+    +  G +    +    +    ++   +  +  +
Sbjct: 468 FRWLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDILKKGLENVCQVGSSITYMYAK 527

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLG 501
           +GR+  AY+  + MP K D   W  ++ +  ++  P L 
Sbjct: 528 SGRLDLAYQFFRRMPVK-DSVCWNLMIVSFSQNGKPELA 565



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 105/341 (30%), Positives = 173/341 (50%), Gaps = 10/341 (2%)

Query: 134 VHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSG 193
           +H   +  G+ GS+ + + ++ +Y  C    D   L F  ++    + W  LI G++  G
Sbjct: 98  IHAKVLVCGMNGSLTLGSRMLGMYVLCRSFKDVGNL-FCRLQLCYSLPWNWLIRGFSMLG 156

Query: 194 NGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMN 253
                L  F  ML   V  + Y+F   ++AC     V   K++H      GF  +L + +
Sbjct: 157 CFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHELARSMGFHMDLFIGS 216

Query: 254 SILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSP 312
           S++ +Y     + DA   FDE+  +D I WN ++ GY K+G  +  L  F +M++    P
Sbjct: 217 SLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKP 276

Query: 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIF 372
           N  +F  +++ CAT   +  G Q+H  ++R G + +  +AN +I MY+KCGN+ D++KIF
Sbjct: 277 NSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIF 336

Query: 373 SEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD 432
             M   D VTW  ++ GY  +G   EA+ LF  MV SGV+ D I F + L +   +G   
Sbjct: 337 DIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSG--- 393

Query: 433 EGLKYFKSMNDYNVNPNK--EIY--GCVVDLLGRAGRVKEA 469
             LKY K ++ Y V      ++Y    +VD+  + G V+ A
Sbjct: 394 -SLKYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMA 433



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 119/259 (45%), Gaps = 2/259 (0%)

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
           + IHA V+  G   +L + + +L MY       D    F  +     + WN +I G+   
Sbjct: 96  RQIHAKVLVCGMNGSLTLGSRMLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGFSML 155

Query: 294 GSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
           G  +  L  F +M     +P+ +TF  +I AC  L  +   + VH      G   +L + 
Sbjct: 156 GCFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHELARSMGFHMDLFIG 215

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
           ++LI +Y   G I D++ +F E+  RD + W  M+ GY  +G    A+  F EM  S V+
Sbjct: 216 SSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVK 275

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
           P+ + F+ +L+ C+  G+V  G++    +       +  +   ++ +  + G + +A ++
Sbjct: 276 PNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKI 335

Query: 473 IKSMPFKPDESVWGPLLGA 491
              MP + D   W  L+  
Sbjct: 336 FDIMP-QTDTVTWNGLIAG 353



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 88/199 (44%), Gaps = 4/199 (2%)

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
           +Q+HA ++  G++G+L L + ++ MY  C +  D   +F  +     + W  ++ G+   
Sbjct: 96  RQIHAKVLVCGMNGSLTLGSRMLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGFSML 155

Query: 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIY 453
           G    A+  F  M+ S V PD+  F  V+ AC     V       +       + +  I 
Sbjct: 156 GCFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHELARSMGFHMDLFIG 215

Query: 454 GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDL 511
             ++ L    G + +A  L   +P + D  +W  +L    ++   N  LG    +R   +
Sbjct: 216 SSLIKLYTDNGYIHDAKYLFDELPVR-DCILWNVMLNGYVKNGDFNSALGTFQEMRNSCV 274

Query: 512 KPNMMGTYIILSNIYAAEG 530
           KPN + +++ L ++ A  G
Sbjct: 275 KPNSV-SFVCLLSVCATRG 292


>gi|15227623|ref|NP_178437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216181|sp|Q9ZQ74.1|PP146_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03380, mitochondrial; Flags: Precursor
 gi|4335760|gb|AAD17437.1| unknown protein [Arabidopsis thaliana]
 gi|330250600|gb|AEC05694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 189/540 (35%), Positives = 311/540 (57%), Gaps = 12/540 (2%)

Query: 24  QSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVM 83
           Q L + KK  I      +P   +++ T L+  Y   G I+ A  +F+++  R+VV WT M
Sbjct: 156 QDLDNGKK--IHCQLVKVPSFDNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSM 213

Query: 84  IAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGL 143
           IAGY   +   +   +F  M  N V  N +T  +++ AC  + +L      HG  +K G+
Sbjct: 214 IAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGI 273

Query: 144 EGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFK 203
           E S  +  SL+D+Y  C   + NAR VFN+    + V WT +I GY H+G+    L +F+
Sbjct: 274 ELSSCLVTSLLDMYVKCG-DISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQ 332

Query: 204 EMLLEGVEMNPYSFSIA--VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR 261
           +M  +GVE+ P   +IA  +  C     +  G+ +H   IK G   +  V N+++ MY +
Sbjct: 333 KM--KGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGIW-DTNVANALVHMYAK 389

Query: 262 FDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSI 320
                DA   F+  +EKD++ WN+II+G+ ++GS  E L +F +M SE  +PN  T  S+
Sbjct: 390 CYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASL 449

Query: 321 IAACATLAALSCGQQVHAGIVRRGL--DGNLALANALIDMYAKCGNISDSQKIFSEMSDR 378
            +ACA+L +L+ G  +HA  V+ G     ++ +  AL+D YAKCG+   ++ IF  + ++
Sbjct: 450 FSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEK 509

Query: 379 DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYF 438
           + +TW++M+ GYG  G    ++ELF+EM+K   +P+   F ++L+AC H G+V+EG KYF
Sbjct: 510 NTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSACGHTGMVNEGKKYF 569

Query: 439 KSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
            SM  DYN  P+ + Y C+VD+L RAG +++A ++I+ MP +PD   +G  L  C  H  
Sbjct: 570 SSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGAFLHGCGMHSR 629

Query: 498 PNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIE 557
            +LG++   ++LDL P+    Y+++SN+YA++G+W +  + R +M+  G  K  G S +E
Sbjct: 630 FDLGEIVIKKMLDLHPDDASYYVLVSNLYASDGRWNQAKEVRNLMKQRGLSKIAGHSTME 689



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 141/497 (28%), Positives = 236/497 (47%), Gaps = 50/497 (10%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +AT L+  Y   G  ++AR +FD++PE D   W VM+  Y       +   ++  ++++ 
Sbjct: 78  IATKLVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKESVEVVKLYDLLMKHG 137

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
              +    S  LKAC  ++ L N   +H   +K     ++ V   L+D+YA C   + +A
Sbjct: 138 FRYDDIVFSKALKACTELQDLDNGKKIHCQLVKVPSFDNV-VLTGLLDMYAKCG-EIKSA 195

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             VFND+  +N V WT++I GY  +     GL +F  M    V  N Y++   + AC   
Sbjct: 196 HKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKL 255

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  GK  H  ++K G   +  ++ S+LDMY +   +S+A + F+E +  DL+ W  +I
Sbjct: 256 SALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMI 315

Query: 288 AGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL- 345
            GY  +GS +E L++F KMK     PNC T  S+++ C  +  L  G+ VH   ++ G+ 
Sbjct: 316 VGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGIW 375

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           D N  +ANAL+ MYAKC    D++ +F   S++D+V W S++ G+  +G   EA+ LF  
Sbjct: 376 DTN--VANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHR 433

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN------------------ 447
           M    V P+ +   ++ +AC+  G +  G     S++ Y+V                   
Sbjct: 434 MNSESVTPNGVTVASLFSACASLGSLAVG----SSLHAYSVKLGFLASSSVHVGTALLDF 489

Query: 448 -------------------PNKEIYGCVVDLLGRAGRVKEAYELIKSM---PFKPDESVW 485
                               N   +  ++   G+ G    + EL + M     KP+ES +
Sbjct: 490 YAKCGDPQSARLIFDTIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTF 549

Query: 486 GPLLGACKEHRLPNLGK 502
             +L AC    + N GK
Sbjct: 550 TSILSACGHTGMVNEGK 566



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 187/345 (54%), Gaps = 16/345 (4%)

Query: 96  AWTVFVEMVRNEVNPNA---FTLSS----VLKACKGMKSLSNAALVHGMAIKEGLEGSIY 148
           ++T   E++  E N  +   +  SS    +L  C  + SL  +   HG+    GL G I 
Sbjct: 21  SFTTIKELILTEENDGSSLHYAASSPCFLLLSKCTNIDSLRQS---HGVLTGNGLMGDIS 77

Query: 149 VENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE 208
           +   L+ +Y     + D ARLVF+ +   +   W  ++  Y  +      + ++  ++  
Sbjct: 78  IATKLVSLYGFFGYTKD-ARLVFDQIPEPDFYLWKVMLRCYCLNKESVEVVKLYDLLMKH 136

Query: 209 GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDA 268
           G   +   FS A++AC     +  GK IH  ++K     N+ V+  +LDMY +   +  A
Sbjct: 137 GFRYDDIVFSKALKACTELQDLDNGKKIHCQLVKVPSFDNV-VLTGLLDMYAKCGEIKSA 195

Query: 269 NQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATL 327
           ++ F+++T ++++ W ++IAGY K+    E L +F++M+      N +T+ ++I AC  L
Sbjct: 196 HKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKL 255

Query: 328 AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMM 387
           +AL  G+  H  +V+ G++ +  L  +L+DMY KCG+IS+++++F+E S  DLV WT+M+
Sbjct: 256 SALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMI 315

Query: 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD 432
           +GY  +G   EA+ LF +M    ++P+ +   +VL+ C   GL++
Sbjct: 316 VGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGC---GLIE 357


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 183/561 (32%), Positives = 318/561 (56%), Gaps = 6/561 (1%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV--RNEVN 109
           ++  Y   G + EA+  F +   ++VVSW  MI+ ++     N+A+ +  EM     E+ 
Sbjct: 289 MVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMK 348

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
            N  T+ +VL AC     L +   +HG + +   +  + + N+ +  YA C  ++++A  
Sbjct: 349 ANEVTILNVLPACLDKLQLRSLKELHGYSFRHCFQ-HVELSNAFILAYAKCG-ALNSAEK 406

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           VF+ +  K   SW  LI G+A +G+    L +  +M   G + + ++ S  + ACA    
Sbjct: 407 VFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKS 466

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           + +GK IH  V+++G  ++  V  S+L  Y      S A   FD M +K+L++WN +I+G
Sbjct: 467 LQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISG 526

Query: 290 YEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           Y ++G   E L +F K  SE    +     S+  AC+ L+AL  G++ H  +++     +
Sbjct: 527 YSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTED 586

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
             +  ++IDMYAK G I +S+K+F  + D+++ +W ++++ +G HGHGKEAIEL++ M K
Sbjct: 587 AFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKK 646

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYN-VNPNKEIYGCVVDLLGRAGRVK 467
            G  PDR  ++ +L AC HAGLV+EGLKYFK M ++N + P  E Y C++D+L RAGR+ 
Sbjct: 647 VGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLARAGRLD 706

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527
           +A  L+  MP + D  +W  LL +C+      +G+  A ++L+L+P+    Y++LSN+YA
Sbjct: 707 DALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVAKKLLELEPDKAENYVLLSNLYA 766

Query: 528 AEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIR 587
             GKW+   + R++M+ +G +K+ G SWIEV  +V  F+  D +   +  +  +   L  
Sbjct: 767 GLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGRVYSFVVGDSLQPKSAEIRVIWRRLEE 826

Query: 588 HMNETAYEPDIDCLIHDLEGE 608
            ++E  Y+P+   ++H++  E
Sbjct: 827 RISEIGYKPNTSSVLHEVGEE 847



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 118/403 (29%), Positives = 214/403 (53%), Gaps = 11/403 (2%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +L T LIK Y   G   ++R +FD M  ++++ W  +++GYT    +     VF+++V +
Sbjct: 80  VLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSD 139

Query: 107 -EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
            +  P+ FT  SV+KAC G+  +    ++HGM IK GL   ++V N+L+ +Y  C  ++D
Sbjct: 140 TDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCG-AVD 198

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEML-LEGVEMNPYSFSIAVRAC 224
            A  VF+ M   N VSW ++I  ++ +G       +  EML  EG+  +  +    +  C
Sbjct: 199 EAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVC 258

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           A  G V  G  IH   +K G    + V N+++ MY +   L++A   F +   K++++WN
Sbjct: 259 AGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWN 318

Query: 285 TIIAGYEKSGS-SECLNMFSKM--KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           T+I+ +   G  +E  N+  +M  + E    N  T  +++ AC     L   +++H    
Sbjct: 319 TMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSF 378

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           R     ++ L+NA I  YAKCG ++ ++K+F  + D+ + +W +++ G+  +G  ++A+ 
Sbjct: 379 RHCFQ-HVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALH 437

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDY 444
           L  +M  SG +PD     ++L AC+H     + L+Y K ++ Y
Sbjct: 438 LLFQMTYSGQQPDWFTISSLLLACAHL----KSLQYGKEIHGY 476



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 110/384 (28%), Positives = 189/384 (49%), Gaps = 32/384 (8%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L+   I +Y   G +  A  +F  + ++ V SW  +I G+       +A  +  +M  + 
Sbjct: 387 LSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSG 446

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
             P+ FT+SS+L AC  +KSL     +HG  ++ GLE   +V  SL+  Y  C     +A
Sbjct: 447 QQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCG-KASSA 505

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R++F+ MK KN VSW  +I+GY+ +G  Y  L +F++ L EG++ +  +      AC+  
Sbjct: 506 RVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQL 565

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  GK  H  V+K     +  V  SI+DMY +  C+ ++ + FD + +K++ +WN II
Sbjct: 566 SALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAII 625

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
             +   G   E + ++ +MK     P+ FT+  I+ AC            HAG+V  GL 
Sbjct: 626 VAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACG-----------HAGLVEEGLK 674

Query: 347 GNLALAN------------ALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAH 393
               + N             LIDM A+ G + D+ ++ +EM +  D   W+S++      
Sbjct: 675 YFKEMQNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTF 734

Query: 394 GHGKEAIELFDEMVKS--GVRPDR 415
           G    A+E+ +++ K    + PD+
Sbjct: 735 G----ALEIGEKVAKKLLELEPDK 754



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 103/391 (26%), Positives = 196/391 (50%), Gaps = 17/391 (4%)

Query: 118 VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENS-LMDVYATCCISMDNARLVFNDMKW 176
           +L+AC   K +     +H          + YV N+ L+ +YA C   +D +RLVF++M+ 
Sbjct: 49  LLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLD-SRLVFDNMET 107

Query: 177 KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP--YSFSIAVRACASTGWVSFGK 234
           KN + W  L++GY  +G     + VF + L+   +  P  ++F   ++AC     V  G+
Sbjct: 108 KNLIQWNALVSGYTRNGLYGDVVKVFMD-LVSDTDFQPDNFTFPSVIKACGGILDVRLGE 166

Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG 294
           +IH  VIK G   ++ V N+++ MY +   + +A + FD M E +L++WN++I  + ++G
Sbjct: 167 VIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENG 226

Query: 295 -SSECLNMFSKMKSER-FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
            S +  ++  +M  E    P+  T  +I+  CA    +  G  +H   V+ GL   + + 
Sbjct: 227 FSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVN 286

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG-- 410
           NA++ MY+KCG ++++Q  F + +++++V+W +M+  +   G   EA  L  EM   G  
Sbjct: 287 NAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEE 346

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN---PNKEIYGCVVDLLGRAGRVK 467
           ++ + +  + VL AC    L    L+  K ++ Y+      + E+    +    + G + 
Sbjct: 347 MKANEVTILNVLPAC----LDKLQLRSLKELHGYSFRHCFQHVELSNAFILAYAKCGALN 402

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRLP 498
            A ++   +  K   S W  L+G   ++  P
Sbjct: 403 SAEKVFHGIGDKTVSS-WNALIGGHAQNGDP 432



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 125/224 (55%), Gaps = 4/224 (1%)

Query: 216 SFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNS-ILDMYCRFDCLSDANQYFDE 274
           +  + ++AC +   +  G+ +H  V       N  V+N+ ++ MY       D+   FD 
Sbjct: 45  AIGLLLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDN 104

Query: 275 MTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSER-FSPNCFTFTSIIAACATLAALSC 332
           M  K+LI WN +++GY ++G   + + +F  + S+  F P+ FTF S+I AC  +  +  
Sbjct: 105 METKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRL 164

Query: 333 GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA 392
           G+ +H  +++ GL  ++ + NAL+ MY KCG + ++ K+F  M + +LV+W SM+  +  
Sbjct: 165 GEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSE 224

Query: 393 HGHGKEAIELFDEMV-KSGVRPDRIVFMAVLTACSHAGLVDEGL 435
           +G  +++ +L  EM+ + G+ PD +  + +L  C+  G VD G+
Sbjct: 225 NGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGM 268



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 83/182 (45%), Gaps = 29/182 (15%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + +  ++I  Y   G I+E+R +FD + +++V SW  +I  +       +A  ++  M +
Sbjct: 587 AFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKK 646

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVEN-----SLMDVYATC 160
               P+ FT   +L AC            H   ++EGL+    ++N       ++ YA C
Sbjct: 647 VGQMPDRFTYIGILMACG-----------HAGLVEEGLKYFKEMQNFNLIEPKLEHYA-C 694

Query: 161 CISM-------DNARLVFNDMKWKNDVS-WTTLITGYAHSGNGYGGLGVFKEMLLEGVEM 212
            I M       D+A  + N+M  + D   W++L+     S   +G L + +++  + +E+
Sbjct: 695 LIDMLARAGRLDDALRLVNEMPEEADNRIWSSLL----RSCRTFGALEIGEKVAKKLLEL 750

Query: 213 NP 214
            P
Sbjct: 751 EP 752


>gi|297797117|ref|XP_002866443.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312278|gb|EFH42702.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 749

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 183/548 (33%), Positives = 305/548 (55%), Gaps = 4/548 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + + T+L+  Y   G I ++  +F+ +  R+ VSW  MI+G+ S   + +A+  F+ M+ 
Sbjct: 199 TFVNTSLLGMYAKLGRIGDSCKVFNSLENRNQVSWNAMISGFVSNGLYAEAYNSFLRMLG 258

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISM 164
            E+ PN     SV KA   +  +     ++ +A + G++ +I+V  +L+D++A C C++ 
Sbjct: 259 EEIRPNVACFISVSKAIGQLGDVEKGRYINRIAFEIGMQSNIHVGTALIDMFAKCGCVTE 318

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
             +  V N      ++ W  +I+G+  SG+G   + +F  M    ++ + Y++   + + 
Sbjct: 319 SWSVFVSNFSGCGVNLPWNAMISGFTISGHGEEAMLLFLRMCQNNIKRDVYTYCSTLNSI 378

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           A    + + K +H  + K G    + + N+++D Y +   L    + FD   E + I+W 
Sbjct: 379 ADMRSLEYVKQLHGMIWKSG-SIGVSLCNALMDAYAKCGELDAMRKLFDTWEESNQISWT 437

Query: 285 TIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           T++  Y +S   E  L++FS+M+   F PN  TF+ ++A+CA+L +L  GQQVH+   + 
Sbjct: 438 TLVTAYSQSSEWEDALSVFSQMREMGFQPNQVTFSGVLASCASLCSLEYGQQVHSLTCKT 497

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G   +  + + LIDMYAKCG++ D+ K+F  + D D+++WT+M+ GY  HG  K+A+ELF
Sbjct: 498 GFARDKCVESVLIDMYAKCGSVRDAIKVFESLKDPDVISWTAMISGYAQHGMAKDALELF 557

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGR 462
            +M      P+   F+ +L ACSH GLVDEGL+YF  M + Y + P  E Y CVVD+LGR
Sbjct: 558 RKMELVLPNPNSATFLCLLFACSHGGLVDEGLRYFHLMEERYGLVPEIEHYACVVDILGR 617

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
            GR+ EA++ I  MP +PDE VW  LLGAC+ H    L K+AA +VL   P+     ++L
Sbjct: 618 VGRLTEAWKFIMKMPIEPDEKVWSTLLGACRVHGNIQLAKIAAQKVLSYNPDDFAALVLL 677

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           SN Y   G  E     R +M+    +KE GMSWI +  K+  F + D+       +Y  L
Sbjct: 678 SNTYREAGNIEGGLNVRNMMKSQAMRKETGMSWICIGGKIHKFCSGDQYHPQKDDIYKTL 737

Query: 583 EMLIRHMN 590
            +L+  + 
Sbjct: 738 NVLMEKVQ 745



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 120/459 (26%), Positives = 231/459 (50%), Gaps = 6/459 (1%)

Query: 40  LIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTV 99
           LI K  +++   L+ +Y        AR +FDE+P++ V SWTV++ G T    +      
Sbjct: 92  LIEKSLTVMLNQLVIAYSKCSDFGSARQVFDEIPQKSVFSWTVLMVGATENGFYRDGIDY 151

Query: 100 FVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
           FVE++  ++ P+ + LS+ ++AC G+ S+    +VH   I  G     +V  SL+ +YA 
Sbjct: 152 FVEILGCDIVPDEYALSAAIQACIGVDSIVVGEMVHAQVITRGFSSRTFVNTSLLGMYAK 211

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
                D+ + VFN ++ +N VSW  +I+G+  +G        F  ML E +  N   F  
Sbjct: 212 LGRIGDSCK-VFNSLENRNQVSWNAMISGFVSNGLYAEAYNSFLRMLGEEIRPNVACFIS 270

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
             +A    G V  G+ I+    + G  SN+ V  +++DM+ +  C++++   F       
Sbjct: 271 VSKAIGQLGDVEKGRYINRIAFEIGMQSNIHVGTALIDMFAKCGCVTESWSVFVSNFSGC 330

Query: 280 LIT--WNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQV 336
            +   WN +I+G+  SG   E + +F +M       + +T+ S + + A + +L   +Q+
Sbjct: 331 GVNLPWNAMISGFTISGHGEEAMLLFLRMCQNNIKRDVYTYCSTLNSIADMRSLEYVKQL 390

Query: 337 HAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHG 396
           H  I + G  G ++L NAL+D YAKCG +   +K+F    + + ++WT+++  Y      
Sbjct: 391 HGMIWKSGSIG-VSLCNALMDAYAKCGELDAMRKLFDTWEESNQISWTTLVTAYSQSSEW 449

Query: 397 KEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCV 456
           ++A+ +F +M + G +P+++ F  VL +C+    ++ G +            +K +   +
Sbjct: 450 EDALSVFSQMREMGFQPNQVTFSGVLASCASLCSLEYGQQVHSLTCKTGFARDKCVESVL 509

Query: 457 VDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           +D+  + G V++A ++ +S+   PD   W  ++    +H
Sbjct: 510 IDMYAKCGSVRDAIKVFESLK-DPDVISWTAMISGYAQH 547



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 174/334 (52%), Gaps = 10/334 (2%)

Query: 114 TLSSVLKACKGMKSLSNAALVHGMAIK-EGLEGSIYVE-NSLMDVYATCCISMDNARLVF 171
           +L  +++     + L  A  +HG  IK + +E S+ V  N L+  Y+ C     +AR VF
Sbjct: 63  SLIELIRESADERCLKKAKSIHGFVIKFQLIEKSLTVMLNQLVIAYSKCS-DFGSARQVF 121

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           +++  K+  SWT L+ G   +G    G+  F E+L   +  + Y+ S A++AC     + 
Sbjct: 122 DEIPQKSVFSWTVLMVGATENGFYRDGIDYFVEILGCDIVPDEYALSAAIQACIGVDSIV 181

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            G+++HA VI  GF S   V  S+L MY +   + D+ + F+ +  ++ ++WN +I+G+ 
Sbjct: 182 VGEMVHAQVITRGFSSRTFVNTSLLGMYAKLGRIGDSCKVFNSLENRNQVSWNAMISGFV 241

Query: 292 KSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
            +G  +E  N F +M  E   PN   F S+  A   L  +  G+ ++      G+  N+ 
Sbjct: 242 SNGLYAEAYNSFLRMLGEEIRPNVACFISVSKAIGQLGDVEKGRYINRIAFEIGMQSNIH 301

Query: 351 LANALIDMYAKCGNISDSQKIF-SEMSDRDL-VTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           +  ALIDM+AKCG +++S  +F S  S   + + W +M+ G+   GHG+EA+ LF  M +
Sbjct: 302 VGTALIDMFAKCGCVTESWSVFVSNFSGCGVNLPWNAMISGFTISGHGEEAMLLFLRMCQ 361

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN 442
           + ++ D   + + L + +        L+Y K ++
Sbjct: 362 NNIKRDVYTYCSTLNSIADM----RSLEYVKQLH 391



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 129/258 (50%), Gaps = 3/258 (1%)

Query: 221 VRACASTGWVSFGKLIHAAVIKHGF-GSNLPVM-NSILDMYCRFDCLSDANQYFDEMTEK 278
           +R  A    +   K IH  VIK      +L VM N ++  Y +      A Q FDE+ +K
Sbjct: 68  IRESADERCLKKAKSIHGFVIKFQLIEKSLTVMLNQLVIAYSKCSDFGSARQVFDEIPQK 127

Query: 279 DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
            + +W  ++ G  ++G   + ++ F ++      P+ +  ++ I AC  + ++  G+ VH
Sbjct: 128 SVFSWTVLMVGATENGFYRDGIDYFVEILGCDIVPDEYALSAAIQACIGVDSIVVGEMVH 187

Query: 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
           A ++ RG      +  +L+ MYAK G I DS K+F+ + +R+ V+W +M+ G+ ++G   
Sbjct: 188 AQVITRGFSSRTFVNTSLLGMYAKLGRIGDSCKVFNSLENRNQVSWNAMISGFVSNGLYA 247

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVV 457
           EA   F  M+   +RP+   F++V  A    G V++G    +   +  +  N  +   ++
Sbjct: 248 EAYNSFLRMLGEEIRPNVACFISVSKAIGQLGDVEKGRYINRIAFEIGMQSNIHVGTALI 307

Query: 458 DLLGRAGRVKEAYELIKS 475
           D+  + G V E++ +  S
Sbjct: 308 DMFAKCGCVTESWSVFVS 325


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 191/575 (33%), Positives = 314/575 (54%), Gaps = 44/575 (7%)

Query: 73  PERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAA 132
           P  +V  W  +I   T     ++A +++ E  R  + P+ +T  SV+ AC G+     A 
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 135

Query: 133 LVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHS 192
            +H   +  G    +Y+ N+L+D+Y      +D AR VF +M  ++ VSW +LI+GY  +
Sbjct: 136 SIHDRVLDMGFGSDLYIGNALIDMYCRFN-DLDKARKVFEEMPLRDVVSWNSLISGYNAN 194

Query: 193 GNGYGGLGVFKEMLLEGVEM----NPYSFSIA--VRACASTGWVSFGKLIHAAVIKHGFG 246
           G     L ++ + +   +EM     P   +I   ++AC   G + FGK +H  +I  G+ 
Sbjct: 195 GYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYE 254

Query: 247 SNLPVMNSILDMYCR-------------FDC------------------LSDANQYFDEM 275
            +    N +++MY +               C                  + D+ + F+ M
Sbjct: 255 CDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENM 314

Query: 276 TEKDLITWNTIIAGYEKSGSSEC---LNMFSKMKSERFSPNCFTFTSIIAACATLAALSC 332
             +D+ITWNTIIA    S   +C   L M S+M++E  +P+  T  SI+  C+ LAA   
Sbjct: 315 KARDIITWNTIIASCVHS--EDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQ 372

Query: 333 GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA 392
           G+++H  I + GL+ ++ + N LI+MY+KCG++ +S ++F  M  +D+VTWT+++   G 
Sbjct: 373 GKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGM 432

Query: 393 HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKE 451
           +G GK+A+  F EM  +G+ PD + F+A++ ACSH+GLV+EGL YF  M  DY + P  E
Sbjct: 433 YGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIE 492

Query: 452 IYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDL 511
            Y CVVDLL R+  + +A + I SMP KPD S+WG LL AC+      + +  + R+++L
Sbjct: 493 HYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIEL 552

Query: 512 KPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKM 571
            P+  G Y+++SNIYAA GKW++    RK ++  G KK+ G SW+E+++KV  F    K 
Sbjct: 553 NPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKF 612

Query: 572 GSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
               + V  +L ML   M +  Y  ++  ++HD++
Sbjct: 613 FEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDID 647


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 185/524 (35%), Positives = 319/524 (60%), Gaps = 9/524 (1%)

Query: 92  CHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVEN 151
           C     T  +E++  E NP   T   ++ +C    SL +A  VH   ++ G +   ++  
Sbjct: 50  CKQGNLTQALELLSLEPNPAQHTYELLILSCTHQNSLLDAQRVHRHLLENGFDQDPFLAT 109

Query: 152 SLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVE 211
            L+++Y+    S+DNAR VF+  + +    +  L    + +G+G   L +++ M   G+ 
Sbjct: 110 KLINMYSFF-DSIDNARKVFDKTRNRTIYVYNALFRALSLAGHGEEVLNMYRRMNSIGIP 168

Query: 212 MNPYSFSIAVRAC-ASTGWVSF---GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSD 267
            + ++++  ++AC AS  +VS    G+ IHA +++HG+   + +M +++DMY +F C+S+
Sbjct: 169 SDRFTYTYVLKACVASECFVSLLNKGREIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSN 228

Query: 268 ANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKM--KSERFSPNCFTFTSIIAAC 324
           A+  F++M  K++++W+ +IA Y K+G + E L +F ++  +++   PN  T  S++ AC
Sbjct: 229 ASCVFNQMPVKNVVSWSAMIACYAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQAC 288

Query: 325 ATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWT 384
           A LAAL  G+ +H  I+R+GLD  L + +AL+ MYA+CG +   Q++F +M  RD+V+W 
Sbjct: 289 AALAALEQGRLIHGYILRKGLDSILPVISALVTMYARCGKLELGQRVFDQMDKRDVVSWN 348

Query: 385 SMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-D 443
           S++  YG HG GK+AI +F+EM  +GV P  I F++VL ACSHAGLVDEG   F SM+  
Sbjct: 349 SLISSYGVHGFGKKAIGIFEEMTYNGVEPSPISFVSVLGACSHAGLVDEGKMLFNSMHVA 408

Query: 444 YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKL 503
           + + P+ E Y C+VDLLGRA R++EA ++I++M  +P   VWG LLG+C+ H    L + 
Sbjct: 409 HGICPSVEHYACMVDLLGRANRLEEAAKIIENMRIEPGPKVWGSLLGSCRIHCNVELAER 468

Query: 504 AALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVC 563
           A++R+ DL+P   G Y++L++IYA  G W+   + +K++   G +K  G SWIEV+ K+ 
Sbjct: 469 ASIRLFDLEPTNAGNYVLLADIYAEAGMWDGVKRVKKLLEARGLQKVPGRSWIEVKRKIY 528

Query: 564 GFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEG 607
            F++ D++    + ++ +L  L   + E  Y P    +++DL+ 
Sbjct: 529 SFVSVDEVNPRMEQLHALLVKLSMELKEEGYVPQTKVVLYDLKA 572



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/373 (26%), Positives = 191/373 (51%), Gaps = 20/373 (5%)

Query: 48  LATNLIK--SYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           LAT LI   S+FD   I+ AR +FD+   R +  +  +    +      +   ++  M  
Sbjct: 107 LATKLINMYSFFDS--IDNARKVFDKTRNRTIYVYNALFRALSLAGHGEEVLNMYRRMNS 164

Query: 106 NEVNPNAFTLSSVLKACKG----MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC- 160
             +  + FT + VLKAC      +  L+    +H   ++ G +G +++  +L+D+YA   
Sbjct: 165 IGIPSDRFTYTYVLKACVASECFVSLLNKGREIHAHILRHGYDGYVHIMTTLVDMYAKFG 224

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI- 219
           C+S  NA  VFN M  KN VSW+ +I  YA +G  +  L +F+E++LE  ++ P S ++ 
Sbjct: 225 CVS--NASCVFNQMPVKNVVSWSAMIACYAKNGKAFEALELFRELMLETQDLCPNSVTMV 282

Query: 220 -AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK 278
             ++ACA+   +  G+LIH  +++ G  S LPV+++++ MY R   L    + FD+M ++
Sbjct: 283 SVLQACAALAALEQGRLIHGYILRKGLDSILPVISALVTMYARCGKLELGQRVFDQMDKR 342

Query: 279 DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
           D+++WN++I+ Y   G   + + +F +M      P+  +F S++ AC+    +  G+ + 
Sbjct: 343 DVVSWNSLISSYGVHGFGKKAIGIFEEMTYNGVEPSPISFVSVLGACSHAGLVDEGKMLF 402

Query: 338 AGI-VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGH 395
             + V  G+  ++     ++D+  +   + ++ KI   M  +     W S++     H +
Sbjct: 403 NSMHVAHGICPSVEHYACMVDLLGRANRLEEAAKIIENMRIEPGPKVWGSLLGSCRIHCN 462

Query: 396 ----GKEAIELFD 404
                + +I LFD
Sbjct: 463 VELAERASIRLFD 475


>gi|15241714|ref|NP_198751.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171567|sp|Q9FLZ9.1|PP405_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g39350
 gi|10177683|dbj|BAB11009.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007040|gb|AED94423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 677

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 187/514 (36%), Positives = 290/514 (56%), Gaps = 7/514 (1%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+  Y + G +E AR +FD M  RDV+SW  MI+GY      N A  +F  MV   V+ +
Sbjct: 158 LLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLD 217

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
             T+ S+L  C  +K L     VH +  ++ L   I V+N+L+++Y  C   MD AR VF
Sbjct: 218 HATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCG-RMDEARFVF 276

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           + M+ ++ ++WT +I GY   G+    L + + M  EGV  N  + +  V  C     V+
Sbjct: 277 DRMERRDVITWTCMINGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCGDALKVN 336

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG-Y 290
            GK +H   ++    S++ +  S++ MY +   +    + F   ++     W+ IIAG  
Sbjct: 337 DGKCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAGCV 396

Query: 291 EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           +    S+ L +F +M+ E   PN  T  S++ A A LA L     +H  + + G   +L 
Sbjct: 397 QNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMSSLD 456

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDR----DLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            A  L+ +Y+KCG +  + KIF+ + ++    D+V W +++ GYG HG G  A+++F EM
Sbjct: 457 AATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEM 516

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGR 465
           V+SGV P+ I F + L ACSH+GLV+EGL  F+ M   Y        Y C+VDLLGRAGR
Sbjct: 517 VRSGVTPNEITFTSALNACSHSGLVEEGLTLFRFMLEHYKTLARSNHYTCIVDLLGRAGR 576

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           + EAY LI ++PF+P  +VWG LL AC  H    LG++AA ++ +L+P   G Y++L+NI
Sbjct: 577 LDEAYNLITTIPFEPTSTVWGALLAACVTHENVQLGEMAANKLFELEPENTGNYVLLANI 636

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVR 559
           YAA G+W++  K R +M  +G +K+ G S IE+R
Sbjct: 637 YAALGRWKDMEKVRSMMENVGLRKKPGHSTIEIR 670



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/455 (26%), Positives = 222/455 (48%), Gaps = 8/455 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           IL+T L  +Y   G I  AR LF+EMP+  ++S+ ++I  Y     ++ A +VF+ MV  
Sbjct: 51  ILST-LSVTYALCGHITYARKLFEEMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSE 109

Query: 107 EVN--PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
            V   P+ +T   V KA   +KS+    +VHG  ++       YV+N+L+ +Y      +
Sbjct: 110 GVKCVPDGYTYPFVAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFG-KV 168

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           + AR VF+ MK ++ +SW T+I+GY  +G     L +F  M+ E V+++  +    +  C
Sbjct: 169 EMARDVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVC 228

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
                +  G+ +H  V +   G  + V N++++MY +   + +A   FD M  +D+ITW 
Sbjct: 229 GHLKDLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRMERRDVITWT 288

Query: 285 TIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +I GY + G  E  L +   M+ E   PN  T  S+++ C     ++ G+ +H   VR+
Sbjct: 289 CMINGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQ 348

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
            +  ++ +  +LI MYAKC  +    ++FS  S      W++++ G   +    +A+ LF
Sbjct: 349 QVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVSDALGLF 408

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
             M +  V P+     ++L A +    + + +     +       + +    +V +  + 
Sbjct: 409 KRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMSSLDAATGLVHVYSKC 468

Query: 464 GRVKEAYELIKSMPFK---PDESVWGPLLGACKEH 495
           G ++ A+++   +  K    D  +WG L+     H
Sbjct: 469 GTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMH 503



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 112/405 (27%), Positives = 198/405 (48%), Gaps = 8/405 (1%)

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMK 175
            S+L      +S+S    +H   I  G   S ++ ++L   YA C   +  AR +F +M 
Sbjct: 19  QSLLNHFAATQSISKTKALHCHVITGG-RVSGHILSTLSVTYALCG-HITYARKLFEEMP 76

Query: 176 WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP--YSFSIAVRACASTGWVSFG 233
             + +S+  +I  Y   G  +  + VF  M+ EGV+  P  Y++    +A      +  G
Sbjct: 77  QSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPFVAKAAGELKSMKLG 136

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
            ++H  +++  FG +  V N++L MY  F  +  A   FD M  +D+I+WNT+I+GY ++
Sbjct: 137 LVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGYYRN 196

Query: 294 G-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
           G  ++ L MF  M +E    +  T  S++  C  L  L  G+ VH  +  + L   + + 
Sbjct: 197 GYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVK 256

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
           NAL++MY KCG + +++ +F  M  RD++TWT M+ GY   G  + A+EL   M   GVR
Sbjct: 257 NALVNMYLKCGRMDEARFVFDRMERRDVITWTCMINGYTEDGDVENALELCRLMQFEGVR 316

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
           P+ +   ++++ C  A  V++G           V  +  I   ++ +  +  RV   + +
Sbjct: 317 PNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRV 376

Query: 473 IKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNM 515
             S   K     W  ++  C ++ L +  LG    +R  D++PN+
Sbjct: 377 F-SGASKYHTGPWSAIIAGCVQNELVSDALGLFKRMRREDVEPNI 420


>gi|297607519|ref|NP_001060096.2| Os07g0578800 [Oryza sativa Japonica Group]
 gi|255677918|dbj|BAF22010.2| Os07g0578800 [Oryza sativa Japonica Group]
          Length = 967

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 199/560 (35%), Positives = 312/560 (55%), Gaps = 37/560 (6%)

Query: 79  SWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNA---FTLSSVLKACKGMKSLSNAALVH 135
           SW   I    S      A ++F++M R  V P +    +L + LK+C G+   + AA +H
Sbjct: 331 SWAYQIRMAASQGQFLHAISLFLQM-RASVAPRSSVPASLPAALKSCAGLGLCTLAASLH 389

Query: 136 GMAIKEGLEGSIYVENSLMDVYATCCISM-----------------------DNARLVFN 172
            +AI+ G     +  N+L+++    CI +                       ++ R VF+
Sbjct: 390 ALAIRSGSFADRFTANALLNL----CIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFD 445

Query: 173 DMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSF 232
           +M  ++ VSW TLI G A        L + +EM  +G   + ++ S  +   A    +  
Sbjct: 446 EMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKR 505

Query: 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEK 292
           G ++H   IK+GF +++ V +S++DMY     +  + + FD  ++ D + WN+++AGY +
Sbjct: 506 GMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQ 565

Query: 293 SGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLAL 351
           +GS  E L +F +M      P   TF+S+I A   L+ L  G+Q+HA ++R   + N+ +
Sbjct: 566 NGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFI 625

Query: 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411
           +++LIDMY KCGN+  ++++F+ +   D+V+WT+M++GY  HG   EA  LF+ M    V
Sbjct: 626 SSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNV 685

Query: 412 RPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470
           +P+ I F+AVLTACSHAGLVD G KYF SM N Y   P+ E    + D LGRAG + EAY
Sbjct: 686 KPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAY 745

Query: 471 ELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEG 530
             I  M  KP  SVW  LL AC+ H+   L +  A ++ +L+P  MG+++ILSN+Y+A G
Sbjct: 746 NFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNMYSASG 805

Query: 531 KWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQY--VYGVLEMLIRH 588
           +W E A+ RK MR  G KKE   SWIEV++K+  FIA+DK  SH  Y  +   L +    
Sbjct: 806 RWNEAAQLRKSMRIKGMKKEPACSWIEVKNKLHVFIAHDK--SHPWYDRIIDALNVYSEQ 863

Query: 589 MNETAYEPDIDCLIHDLEGE 608
           M    Y P+++ ++ D+E E
Sbjct: 864 MIRQGYVPNMEDVLQDIEEE 883



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 174/334 (52%), Gaps = 4/334 (1%)

Query: 63  EEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKAC 122
           E  R +FDEM ERD VSW  +I G      H +A ++  EM R+   P+ FTLS+VL   
Sbjct: 438 ESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIF 497

Query: 123 KGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSW 182
                +    +VHG AIK G +  ++V +SL+D+YA  C  MD +  VF+     + V W
Sbjct: 498 AECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYAN-CTQMDYSMKVFDSFSDCDAVLW 556

Query: 183 TTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIK 242
            +++ GYA +G+    LG+F+ ML  GV   P +FS  + A  +   +  GK +HA +I+
Sbjct: 557 NSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIR 616

Query: 243 HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNM 301
             F  N+ + +S++DMYC+   +  A + F+ +   D+++W  +I GY   G ++E   +
Sbjct: 617 ARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVL 676

Query: 302 FSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-GLDGNLALANALIDMYA 360
           F +M+     PN  TF +++ AC+    +  G +    +  + G   +L    AL D   
Sbjct: 677 FERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLG 736

Query: 361 KCGNISDSQKIFSEMSDRDLVT-WTSMMIGYGAH 393
           + G++ ++    SEM  +   + W++++     H
Sbjct: 737 RAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVH 770



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 119/243 (48%), Gaps = 3/243 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + ++LI  Y +   ++ +  +FD   + D V W  M+AGY       +A  +F  M++ 
Sbjct: 523 FVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQA 582

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V P   T SS++ A   +  L     +H   I+     +I++ +SL+D+Y  C  ++D 
Sbjct: 583 GVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCG-NVDI 641

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR VFN ++  + VSWT +I GYA  G       +F+ M L  V+ N  +F   + AC+ 
Sbjct: 642 ARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSH 701

Query: 227 TGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT-WN 284
            G V  G K  ++   ++GF  +L    ++ D   R   L +A  +  EM  K   + W+
Sbjct: 702 AGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVWS 761

Query: 285 TII 287
           T++
Sbjct: 762 TLL 764


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 194/619 (31%), Positives = 315/619 (50%), Gaps = 42/619 (6%)

Query: 27  QSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAG 86
           ++ +  S+++    +P   +    ++++ +       +AR +FDE P R    WT+ I+G
Sbjct: 30  RAARGGSLEARLATVPHERA----SVLRFWVRRRRFHDARGVFDERPTRTAPVWTLTISG 85

Query: 87  YTSFNCHNQAWTVFVEMV-RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEG 145
                 +      F EM+   E  PNAF L++V++ C GM  + +   VHG  ++ G+  
Sbjct: 86  CARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHL 145

Query: 146 SIYVENSLMDVYATCCISMDNARLVFNDM------KW----------------------- 176
            + + N+++D+YA C    + AR VF  M       W                       
Sbjct: 146 DVVLCNAVLDMYAKCG-QFERARRVFGAMAERDAVSWNIAIGACIQSGDILGSMQLFDES 204

Query: 177 --KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGK 234
             ++  SW T+I+G   SG+    L   + M   GV  N Y++S A            G+
Sbjct: 205 PLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFNHYTYSTAFVLAGMLLLPDLGR 264

Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE---MTEKDLITWNTIIAGYE 291
            +H  V+      +  V +S++DMYC+   L  A   FD    +T      W+T++AGY 
Sbjct: 265 QLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGYV 324

Query: 292 KSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           ++G   E L++F +M  E  + + FT TS+ AACA +  +  G+QVH  + +     +  
Sbjct: 325 QNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKLWYKLDAP 384

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           LA+A++DMYAKCGN+ D++ IF     +++  WTSM+  Y +HG G+ AIELF+ M    
Sbjct: 385 LASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLCSYASHGQGRIAIELFERMTAEK 444

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEA 469
           + P+ I  + VL+ACSH GLV EG  YFK M  +Y + P+ E Y C+VDL GR+G + +A
Sbjct: 445 MTPNEITLVGVLSACSHVGLVSEGELYFKQMQEEYGIVPSIEHYNCIVDLYGRSGLLDKA 504

Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529
              I+      +  VW  LL AC+ H+     KLA+ +++ L+    G+Y++LSNIYA  
Sbjct: 505 KNFIEENNINHEAIVWKTLLSACRLHQHNEYAKLASEKLVQLEQCDAGSYVMLSNIYATN 564

Query: 530 GKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHM 589
            KW +  + R  M+    +K+ G SWI +++ V  F+A D     +  +Y  LE L+  +
Sbjct: 565 NKWHDTFELRVSMQERKVRKQPGRSWIHLKNTVHTFVAGDASHPQSAEIYAYLEKLVERL 624

Query: 590 NETAYEPDIDCLIHDLEGE 608
            E  Y    D ++HD+E E
Sbjct: 625 KEIGYTSRTDLVVHDVEDE 643



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 119/251 (47%), Gaps = 16/251 (6%)

Query: 213 NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYF 272
           +P+S ++ +R  A+ G     +L   A + H   S       +L  + R     DA   F
Sbjct: 19  HPFSAALLLRGRAARGGSLEARL---ATVPHERAS-------VLRFWVRRRRFHDARGVF 68

Query: 273 DEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSE-RFSPNCFTFTSIIAACATLAAL 330
           DE   +    W   I+G  + G  ++ +  F++M +E   +PN F   +++  CA +  +
Sbjct: 69  DERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCAGMGDV 128

Query: 331 SCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY 390
             G++VH  ++R G+  ++ L NA++DMYAKCG    ++++F  M++RD V+W   +   
Sbjct: 129 ESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNIAIGAC 188

Query: 391 GAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK 450
              G    +++LFDE   S +R D   +  +++    +G   + L + + M    V  N 
Sbjct: 189 IQSGDILGSMQLFDE---SPLR-DTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFNH 244

Query: 451 EIYGCVVDLLG 461
             Y     L G
Sbjct: 245 YTYSTAFVLAG 255


>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
            [Brachypodium distachyon]
          Length = 1430

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 192/597 (32%), Positives = 315/597 (52%), Gaps = 41/597 (6%)

Query: 41   IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
            IP   +     L+ ++   G   +AR LF  +P+ D  S+  +IA     +    A    
Sbjct: 821  IPHPNTFSYNALLSAHARLGRPADARALFHAIPDPDQCSYNAVIAALAQHSRGADALLFL 880

Query: 101  VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
              M  ++   NA++ +S L AC   K       VH +  K      +Y+ ++L+D+YA C
Sbjct: 881  AAMHADDFVLNAYSFASALSACAAEKDSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKC 940

Query: 161  CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
                + AR VF  M  +N VSW +LIT Y  +G     L +F  M+  G   +  + +  
Sbjct: 941  EWP-EEARRVFEAMPERNIVSWNSLITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASV 999

Query: 221  VRACASTGWVSFGKLIHAAVIKHG-FGSNLPVMNSILDMY----------CRFDCLS--- 266
            + ACA       G+ +HA V+K   F  ++ + N+++DMY          C FD ++   
Sbjct: 1000 MSACAGLAADREGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRS 1059

Query: 267  ------------------DANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKS 307
                              DA   F +M EK++I WN +IA Y ++G  E  L +F ++K 
Sbjct: 1060 VVSETSLITGYARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKR 1119

Query: 308  ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL------DGNLALANALIDMYAK 361
            E   P  +T+ +++ AC  +A L  GQQ H  +++ G       + ++ + N+L+DMY K
Sbjct: 1120 ESVWPTHYTYGNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLK 1179

Query: 362  CGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAV 421
             G+I D  K+F  M+ RD V+W +M++G+  +G  K+A+ LF+ M+ S   PD +  + V
Sbjct: 1180 TGSIDDGAKVFERMAARDNVSWNAMIVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGV 1239

Query: 422  LTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKP 480
            L+AC H+GLV+EG +YF+SM  D+ + P+++ Y C++DLLGRAG +KE  ELIK M  +P
Sbjct: 1240 LSACGHSGLVEEGRRYFRSMTEDHGIIPSQDHYTCMIDLLGRAGHLKEVEELIKEMSMEP 1299

Query: 481  DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRK 540
            D  +W  LLG+C+ H+   +G+ AA ++ +L P   G Y++LSN+YA  GKW +  + R 
Sbjct: 1300 DAVLWASLLGSCRLHKNVEMGEWAAGKLFELDPRNSGPYVLLSNMYAELGKWADVFRVRS 1359

Query: 541  IMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPD 597
             M+  G  K+ G SWIE+  KV  F+A D        ++ +L ++   M+  + + +
Sbjct: 1360 SMKHRGVSKQPGCSWIEIGRKVSVFLARDNGHPCKNEIHAILRIIQMQMSRVSVDSE 1416



 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 161/500 (32%), Positives = 262/500 (52%), Gaps = 34/500 (6%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           IL T L+  Y +  L+ +AR  FD++ E + +SW V++  Y      + A  +F  M+  
Sbjct: 187 ILGTALVDVYGNCFLLADARRAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSA 246

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC------ 160
            V P  +T+S  + AC+   +L     +H   ++ G E  ++V +S++D+YA C      
Sbjct: 247 GVRPLGYTVSHAVLACRDNNALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAA 306

Query: 161 ------------------------CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGY 196
                                   C  + +A+ VF  MK +N VSW  ++TGY  S +  
Sbjct: 307 QSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLT 366

Query: 197 GGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSIL 256
           G L +F++M  E  E +  +    + AC     +  G+ +HA  IK GF S+  + N+++
Sbjct: 367 GALLLFQQMRQETREFDAITLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALV 426

Query: 257 DMYCRFDCLSDANQY--FDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPN 313
            MY +  CL  A +   F+  +E+D  +WN++I+GYE+   SE  L   +KM+SE  +PN
Sbjct: 427 RMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGYERHSMSEAALYALTKMQSE-VTPN 485

Query: 314 CFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFS 373
             TF+S +AACA +  L  G Q+HA ++R+G + +  L + LIDMY KC     S +IF 
Sbjct: 486 QSTFSSALAACANIFLLKQGMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIRIFE 545

Query: 374 EMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDE 433
               RD++ W SM+ G    G G+  ++LFDEM K G++ D + F+  L +C   G V  
Sbjct: 546 ARPSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQKQGIKADSVTFLGALVSCISEGHVRL 605

Query: 434 GLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACK 493
           G  YF  M D ++ P  E Y C+++LLG+ G + E  + ++ MPF+P  ++W  +   C+
Sbjct: 606 GRSYFTLMMDESIIPRIEHYECMIELLGKHGCMVELEDFVEHMPFEPTTAMWLRIFDCCR 665

Query: 494 EHRLPNLGKLAALRVLDLKP 513
           E+    LG+ AA  + D  P
Sbjct: 666 EYGNRKLGERAAKCINDSNP 685



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 129/482 (26%), Positives = 235/482 (48%), Gaps = 37/482 (7%)

Query: 45  PSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
           P+ L    I+S    G + +AR LFD MP RD  SW  +I   +     ++A ++F  M 
Sbjct: 84  PTFLFNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMN 143

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
              + P   T++SVL  C     L  A  +HG   K   + ++ +  +L+DVY  C +  
Sbjct: 144 SLGIRPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLA 203

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           D AR  F+D+   N +SW  ++  Y  +G G   + +F  ML  GV    Y+ S AV AC
Sbjct: 204 D-ARRAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLAC 262

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCL------------------- 265
                +  G+ IHA V++HG+  ++ V +S++DMY +   +                   
Sbjct: 263 RDNNALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMST 322

Query: 266 ------------SDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSP 312
                       +DA + F+ M E++L++WN ++ GY +S   +  L +F +M+ E    
Sbjct: 323 SIVSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREF 382

Query: 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQK-- 370
           +  T  S+++AC  +  +  G++VHA  ++ G   +  L NAL+ MY+KCG +  +++  
Sbjct: 383 DAITLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLL 442

Query: 371 IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           +F   S+RD  +W S++ GY  H   + A+    +M +S V P++  F + L AC++  L
Sbjct: 443 LFEMGSERDSYSWNSLISGYERHSMSEAALYALTKM-QSEVTPNQSTFSSALAACANIFL 501

Query: 431 VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490
           + +G++    M       +  +   ++D+  +  +   +  + ++ P + D  +W  ++ 
Sbjct: 502 LKQGMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSR-DVILWNSMIF 560

Query: 491 AC 492
            C
Sbjct: 561 GC 562



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 174/372 (46%), Gaps = 3/372 (0%)

Query: 6   LLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEA 65
           +L +    H H    ++    +     + QS   L P    +++T+++      G I +A
Sbjct: 278 VLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADA 337

Query: 66  RTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGM 125
           + +F+ M ER++VSW  M+ GY        A  +F +M +     +A TL SVL AC G+
Sbjct: 338 KRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGI 397

Query: 126 KSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNARLVFNDMKWKNDVSWTT 184
             +     VH  AIK G   S  ++N+L+ +Y+ C C+      L+F     ++  SW +
Sbjct: 398 LDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNS 457

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG 244
           LI+GY         L    +M  E V  N  +FS A+ ACA+   +  G  IHA +I+ G
Sbjct: 458 LISGYERHSMSEAALYALTKMQSE-VTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKG 516

Query: 245 FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSEC-LNMFS 303
           +  +  + + ++DMYC+      + + F+    +D+I WN++I G   SG  E  L++F 
Sbjct: 517 YEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCAYSGKGEYGLDLFD 576

Query: 304 KMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG 363
           +M+ +    +  TF   + +C +   +  G+     ++   +   +     +I++  K G
Sbjct: 577 EMQKQGIKADSVTFLGALVSCISEGHVRLGRSYFTLMMDESIIPRIEHYECMIELLGKHG 636

Query: 364 NISDSQKIFSEM 375
            + + +     M
Sbjct: 637 CMVELEDFVEHM 648



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 125/262 (47%), Gaps = 33/262 (12%)

Query: 241  IKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG------ 294
            +K  F +   ++N+++  Y R   L DA + FDE+   +  ++N +++ + + G      
Sbjct: 787  LKSPFVAETFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADAR 846

Query: 295  --------------------------SSECLNMFSKMKSERFSPNCFTFTSIIAACATLA 328
                                       ++ L   + M ++ F  N ++F S ++ACA   
Sbjct: 847  ALFHAIPDPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEK 906

Query: 329  ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMI 388
                G QVHA + +     ++ + +AL+DMYAKC    +++++F  M +R++V+W S++ 
Sbjct: 907  DSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLIT 966

Query: 389  GYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK-YFKSMNDYNVN 447
             Y  +G   EA+ LF  M+K+G  PD +   +V++AC+      EG + + + +      
Sbjct: 967  CYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFR 1026

Query: 448  PNKEIYGCVVDLLGRAGRVKEA 469
             +  +   +VD+  + GR + A
Sbjct: 1027 EDMVLSNALVDMYAKCGRTRAA 1048



 Score = 42.4 bits (98), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 47/233 (20%), Positives = 92/233 (39%), Gaps = 20/233 (8%)

Query: 351  LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
            L N L+  YA+ G + D++++F E+   +  ++ +++  +   G   +A  LF  +    
Sbjct: 797  LLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARALFHAIPD-- 854

Query: 411  VRPDRIVFMAVLTACSHAGLVDEGLKYFKSM--NDYNVNP---NKEIYGCVVDLLGRAGR 465
              PD+  + AV+ A +      + L +  +M  +D+ +N       +  C  +   R G 
Sbjct: 855  --PDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTG- 911

Query: 466  VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM-MGTYIILSN 524
              + + L+   P   D  +   LL    +   P      A RV +  P   + ++  L  
Sbjct: 912  -VQVHALVSKSPHAKDVYIGSALLDMYAKCEWPE----EARRVFEAMPERNIVSWNSLIT 966

Query: 525  IYAAEGK-WEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQ 576
             Y   G   E    F  +M+      EV ++ +      C  +A D+ G    
Sbjct: 967  CYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVM---SACAGLAADREGRQVH 1016


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 193/565 (34%), Positives = 322/565 (56%), Gaps = 5/565 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A + I  Y   G +  A  LFD M  RD+ +W  MI+G+       +A  VF EM    
Sbjct: 176 IAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKS 235

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V+ ++ T+SS+L  C  +  + +  L+H  AIK GLE  ++V N+L+++YA     + +A
Sbjct: 236 VSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFG-ELRSA 294

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             +FN MK ++ VSW +L+  +  +      LGV+ +M   GV  +  +        A  
Sbjct: 295 ETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAEL 354

Query: 228 GWVSFGKLIHAAVIKH-GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
           G     + IH  V +   F  ++ + N+I+DMY +   +  A + F+ +  KD+I+WN++
Sbjct: 355 GNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSL 414

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFS-PNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           I GY ++G ++E ++++S M+    + PN  T+ SI+ A + L AL  G + H  +++  
Sbjct: 415 ITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNF 474

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           L  ++ ++  L+DMY KCG ++D+  +F E+  +  V+W +++  +G HG+G +A++LF 
Sbjct: 475 LYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFK 534

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRA 463
           EM   GV+PD I F+++L+ACSH+GLVDEG   F+ M + Y + P+ + YGC+VDL GRA
Sbjct: 535 EMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRA 594

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G +++A+  +K+MP +PD SVWG LLGAC+ H    L +  +  +L ++   +G Y++LS
Sbjct: 595 GHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVELVRTVSDHLLKVESENVGYYVLLS 654

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           NIYA  G WE   + R + R  G KK  G S IEV  K+  F   ++     + +Y  L 
Sbjct: 655 NIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIEVDKKIDVFYTGNQTHPKCEEIYSELR 714

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGE 608
            L   M    Y PD + ++ D+E +
Sbjct: 715 NLTAKMKSIGYVPDYNFVLQDVEDD 739



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 138/500 (27%), Positives = 251/500 (50%), Gaps = 23/500 (4%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            L+  LI  Y   G I  AR  FD++  +DV +W  MI+ Y      + A   F E +  
Sbjct: 76  FLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYARIGHFHAAVDCFNEFLST 135

Query: 107 E-VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             +  + +T   V++AC    +L +   VH + +K G E  +Y+  S +  Y+     + 
Sbjct: 136 SFLQSDHYTFPPVIRAC---GNLDDGRKVHCLVLKLGFECDVYIAASFIHFYSRFGF-VS 191

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A  +F++M  ++  +W  +I+G+  +G     L VF EM  + V M+  + S  +  C 
Sbjct: 192 LACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICV 251

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               +  G LIH   IK G   +L V N++++MY +F  L  A   F++M  +D+++WN+
Sbjct: 252 QLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNS 311

Query: 286 IIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR- 343
           ++A +E++      L +++KM S    P+  T  S+ +  A L      + +H  + RR 
Sbjct: 312 LLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRC 371

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
               ++AL NA+IDMYAK G I  ++K+F  +  +D+++W S++ GY  +G   EAI+++
Sbjct: 372 WFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVY 431

Query: 404 DEM-VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
             M   SG  P++  ++++LTA S  G + +G+K    +    +  +  +  C+VD+ G+
Sbjct: 432 SSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGK 491

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD------LKPNMM 516
            G++ +A  L   +P +   S W  ++     H L   G L A+++        +KP+ +
Sbjct: 492 CGKLADALSLFYEVPHQSSVS-WNAIISC---HGLHGYG-LKAVKLFKEMQSEGVKPDHI 546

Query: 517 GTYIILSNIYAA----EGKW 532
               +LS    +    EG+W
Sbjct: 547 TFVSLLSACSHSGLVDEGQW 566



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 150/309 (48%), Gaps = 13/309 (4%)

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           V   K +HA ++  G   ++ +   +++ Y     +  A   FD++  KD+ TWN++I+ 
Sbjct: 56  VHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISA 115

Query: 290 YEKSG----SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           Y + G    + +C N F  + +     + +TF  +I AC  L     G++VH  +++ G 
Sbjct: 116 YARIGHFHAAVDCFNEF--LSTSFLQSDHYTFPPVIRACGNLDD---GRKVHCLVLKLGF 170

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           + ++ +A + I  Y++ G +S +  +F  M  RD+ TW +M+ G+  +G   EA+E+FDE
Sbjct: 171 ECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDE 230

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M    V  D +   ++L  C     +  G+          +  +  +   ++++  + G 
Sbjct: 231 MRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGE 290

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLP--NLGKLAALRVLDLKPNMMGTYIILS 523
           ++ A  +   M  + D   W  LL A ++++ P   LG    +  + + P+++ T + L+
Sbjct: 291 LRSAETIFNQMKVR-DIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLL-TLVSLA 348

Query: 524 NIYAAEGKW 532
           ++ A  G +
Sbjct: 349 SVAAELGNF 357


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 186/565 (32%), Positives = 319/565 (56%), Gaps = 4/565 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++  +L+ SY     +  A  LF  M E+D V++  ++ GY+    ++ A  +F +M   
Sbjct: 175 MVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDL 234

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
              P+ FT ++VL A   M  +     VH   +K     +++V N+L+D Y+     +  
Sbjct: 235 GFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKH-DRIVE 293

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR +F +M   + +S+  LIT  A +G     L +F+E+     +   + F+  +   A+
Sbjct: 294 ARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAAN 353

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
           +  +  G+ IH+  I     S + V NS++DMY + D   +AN+ F ++  +  + W  +
Sbjct: 354 SLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTAL 413

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+GY + G  E  L +F +M   +   +  T+ SI+ ACA LA+L+ G+Q+H+ I+R G 
Sbjct: 414 ISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGC 473

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             N+   +AL+DMYAKCG+I ++ ++F EM  R+ V+W +++  Y  +G G  A+  F++
Sbjct: 474 LSNVFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQ 533

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAG 464
           M+ SG++P+ + F+++L ACSH GLV+EGL+YF SM   Y + P +E Y  +VD+L R+G
Sbjct: 534 MIHSGLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSG 593

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP-NMMGTYIILS 523
           R  EA +L+  MPF+PDE +W  +L +C+ H+   L   AA ++ ++K       Y+ +S
Sbjct: 594 RFDEAEKLMARMPFEPDEIMWSSILNSCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMS 653

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           NIYAA G+W+   K +K +R  G +K    SW+E++ K   F AND     T+ +   L+
Sbjct: 654 NIYAAAGEWDSVGKVKKALRERGIRKVPAYSWVEIKQKTHVFSANDTSHPQTKEITRKLD 713

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGE 608
            L + M E  Y+PD  C +H+++ E
Sbjct: 714 ELEKQMEEQGYKPDSTCALHNVDEE 738



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 130/452 (28%), Positives = 240/452 (53%), Gaps = 3/452 (0%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P    I    +I  Y   G +  AR+LFD M +R VV+WT++I GY   N   +A+ +F
Sbjct: 68  MPHKNVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLF 127

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
            +M R+ + P+  TL+++L      +S++  A VHG  +K G + ++ V NSL+D Y   
Sbjct: 128 ADMCRHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCK- 186

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
             S+  A  +F  M  K++V++  L+TGY+  G  +  + +F +M   G   + ++F+  
Sbjct: 187 TRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAV 246

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           + A      + FG+ +H+ V+K  F  N+ V N++LD Y + D + +A + F EM E D 
Sbjct: 247 LTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDG 306

Query: 281 ITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           I++N +I     +G   E L +F +++  RF    F F ++++  A    L  G+Q+H+ 
Sbjct: 307 ISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQ 366

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
            +       + + N+L+DMYAKC    ++ +IF++++ +  V WT+++ GY   G  ++ 
Sbjct: 367 AIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDG 426

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL 459
           ++LF EM ++ +  D   + ++L AC++   +  G +    +       N      +VD+
Sbjct: 427 LKLFVEMHRAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDM 486

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
             + G +KEA ++ + MP +   S W  L+ A
Sbjct: 487 YAKCGSIKEALQMFQEMPVRNSVS-WNALISA 517



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 44/78 (56%)

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
           Q V A +++ G D N    N  +  + + G++  ++K+F EM  +++++  +M++GY   
Sbjct: 27  QHVDASMIKTGFDPNTCRFNFQVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGYLKS 86

Query: 394 GHGKEAIELFDEMVKSGV 411
           G+   A  LFD MV+  V
Sbjct: 87  GNLSTARSLFDSMVQRSV 104


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 183/463 (39%), Positives = 283/463 (61%), Gaps = 8/463 (1%)

Query: 148 YVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLL 207
           ++ N L+++Y    + + +A+ VF+ M  +N VSWTT+I+ Y+ +      L     ML 
Sbjct: 1   FLINILINMYVKFGL-LHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLR 59

Query: 208 EGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSD 267
           EGV  N +++S  +RAC   G  +  +L H  +IK G  S++ V ++++D+Y R+  L +
Sbjct: 60  EGVRPNMFTYSSVLRAC--DGLFNLRQL-HCCIIKIGLDSDVFVRSALIDVYSRWGELEN 116

Query: 268 ANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACAT 326
           A + FDEM   DL+ W++IIAG+ + S   E L +F +MK   F     T TS++ AC  
Sbjct: 117 ALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTG 176

Query: 327 LAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSM 386
           LA L  G+QVH  +++   D +L L NAL+DMY KCG++ D+  +F  M ++D+++W++M
Sbjct: 177 LALLELGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTM 234

Query: 387 MIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YN 445
           + G   +G+ KEA++LF+ M   G++P+ +  + VL ACSHAGLV+EGL YF SM + + 
Sbjct: 235 IAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFG 294

Query: 446 VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAA 505
           ++P +E YGC++DLLGRAGR+ EA +LI  M  +PD   W  LL AC+ HR  ++   AA
Sbjct: 295 IDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAA 354

Query: 506 LRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGF 565
            ++L L P   GTY++LSNIYA   +W + A+ R+ M   G KKE G SWIEV  ++  F
Sbjct: 355 KQILRLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQIHAF 414

Query: 566 IANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           I  D+     + +   L  LI  +    Y PD + ++ DLEGE
Sbjct: 415 ILGDRSHPQIREINIQLNQLIYKLMGVGYVPDTNFVLQDLEGE 457



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 123/371 (33%), Positives = 201/371 (54%), Gaps = 31/371 (8%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y   GL+ +A+ +FD+MP+R+VVSWT MI+ Y++   +++A    V M+R  V PN
Sbjct: 6   LINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVRPN 65

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
            FT SSVL+AC G+ +L     +H   IK GL+  ++V ++L+DVY+     ++NA  VF
Sbjct: 66  MFTYSSVLRACDGLFNLRQ---LHCCIIKIGLDSDVFVRSALIDVYSRWG-ELENALRVF 121

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           ++M   + V W+++I G+A + +G   L +FK M   G      + +  +RAC     + 
Sbjct: 122 DEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLE 181

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            G+ +H  V+K  +  +L + N++LDMYC+   L DAN  F  M EKD+I+W+T+IAG  
Sbjct: 182 LGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLA 239

Query: 292 KSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL----- 345
           ++G S E L +F  MK     PN  T   ++ AC+           HAG+V  GL     
Sbjct: 240 QNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACS-----------HAGLVEEGLYYFHS 288

Query: 346 -------DGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGK 397
                  D        +ID+  + G +S++  + +EM  + D VTW +++     H +  
Sbjct: 289 MKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVD 348

Query: 398 EAIELFDEMVK 408
            AI    ++++
Sbjct: 349 VAIHAAKQILR 359



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 11/97 (11%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           IL   L+  Y   G +E+A  +F  M E+DV+SW+ MIAG        +A  +F  M   
Sbjct: 198 ILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVL 257

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGL 143
            + PN  T+  VL AC            H   ++EGL
Sbjct: 258 GIKPNYVTIVGVLFACS-----------HAGLVEEGL 283


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 176/503 (34%), Positives = 291/503 (57%), Gaps = 4/503 (0%)

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + P     +S+L++C   K++     +H      G      +   L+++Y  C  S+ +A
Sbjct: 71  LTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVC-DSLSSA 129

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           RL+F+ +   N   W  LI GYA +G     + ++ +M   G+  + ++F   ++ACA+ 
Sbjct: 130 RLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAAL 189

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  G+ IH  V++ G+  ++ V  +++DMY +  C+  A + FD++  +D + WN+++
Sbjct: 190 SAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSML 249

Query: 288 AGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           A Y ++G  + CL++ S+M      P   T  + I+A A  AAL  G+++H    R+  +
Sbjct: 250 AAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFE 309

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            +  +  AL+DMYAKCG++  ++ +F  +  + +V+W +M+ GY  HGH  EA++LF+EM
Sbjct: 310 SHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEM 369

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGR 465
            +   +PD I F+ VL+ACSH GL++EG  +F++M  DY ++P  + Y C+VDLLG +GR
Sbjct: 370 NRVA-KPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGR 428

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           + EAY LI  M   PD  VWG LL +CK H    LG++A  R+++L+P+  G Y+ILSNI
Sbjct: 429 LDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSNI 488

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           YA  GKWE  AK RK+M     KK +  SWIEV++KV  F++ D     +  +Y  LE +
Sbjct: 489 YAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERV 548

Query: 586 IRHMNETAYEPDIDCLIHDLEGE 608
              M E  Y P    + HD+E +
Sbjct: 549 GGLMKEAGYSPSTGSVFHDVEDD 571



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 168/333 (50%), Gaps = 6/333 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           +++AT L+  Y     +  AR LFD +P+ ++  W V+I GY     +  A  ++ +M  
Sbjct: 110 TVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFD 169

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISM 164
             + P+ FT   VLKAC  + ++ +   +H   ++ G E  ++V  +L+D+YA C C+  
Sbjct: 170 YGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVG- 228

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
            +AR VF+ +  ++ V W +++  Y+ +G+    L +  EM+L G+     +   A+ A 
Sbjct: 229 -SAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISAS 287

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           A    +  G+ +H    +  F S+  V  +++DMY +   +  A   F+ +  K +++WN
Sbjct: 288 ADNAALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWN 347

Query: 285 TIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +I GY   G ++E L++F +M +    P+  TF  +++AC+    L  G      ++R 
Sbjct: 348 AMITGYAMHGHATEALDLFEEM-NRVAKPDHITFVGVLSACSHGGLLEEGWMFFETMIRD 406

Query: 344 -GLDGNLALANALIDMYAKCGNISDSQKIFSEM 375
             +D  +     ++D+    G + ++  +  +M
Sbjct: 407 YKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQM 439



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 94/194 (48%), Gaps = 1/194 (0%)

Query: 306 KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNI 365
           +S   +P    + S++ +C    A+  G+Q+HA +   G   +  +A  L+++Y  C ++
Sbjct: 67  ESTCLTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSL 126

Query: 366 SDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTAC 425
           S ++ +F  +   ++  W  ++ GY  +G  + A++L+ +M   G+ PD   F  VL AC
Sbjct: 127 SSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKAC 186

Query: 426 SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVW 485
           +    ++ G +  + +       +  +   ++D+  + G V  A E+   +  + D  +W
Sbjct: 187 AALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVR-DAVLW 245

Query: 486 GPLLGACKEHRLPN 499
             +L A  ++  P+
Sbjct: 246 NSMLAAYSQNGHPD 259


>gi|18409250|ref|NP_564961.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75168871|sp|Q9C507.1|PP111_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial; Flags: Precursor
 gi|12325094|gb|AAG52503.1|AC018364_21 hypothetical protein; 27026-24663 [Arabidopsis thaliana]
 gi|12597785|gb|AAG60097.1|AC073178_8 PPR-repeat protein, putative [Arabidopsis thaliana]
 gi|332196793|gb|AEE34914.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 787

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 193/546 (35%), Positives = 316/546 (57%), Gaps = 5/546 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L  +L+  Y   G +  +  +F+++ +++ VSWT MI+ Y       +A   F EM+++ 
Sbjct: 239 LCNSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMIKSG 298

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSI-YVENSLMDVYATCCISMDN 166
           + PN  TL SVL +C  +  +     VHG A++  L+ +   +  +L+++YA C   + +
Sbjct: 299 IEPNLVTLYSVLSSCGLIGLIREGKSVHGFAVRRELDPNYESLSLALVELYAECG-KLSD 357

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
              V   +  +N V+W +LI+ YAH G     LG+F++M+ + ++ + ++ + ++ AC +
Sbjct: 358 CETVLRVVSDRNIVAWNSLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSISACEN 417

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G V  GK IH  VI+        V NS++DMY +   +  A+  F+++  + ++TWN++
Sbjct: 418 AGLVPLGKQIHGHVIRTDVSDEF-VQNSLIDMYSKSGSVDSASTVFNQIKHRSVVTWNSM 476

Query: 287 IAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           + G+ ++G+S E +++F  M       N  TF ++I AC+++ +L  G+ VH  ++  GL
Sbjct: 477 LCGFSQNGNSVEAISLFDYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVHHKLIISGL 536

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             +L    ALIDMYAKCG+++ ++ +F  MS R +V+W+SM+  YG HG    AI  F++
Sbjct: 537 K-DLFTDTALIDMYAKCGDLNAAETVFRAMSSRSIVSWSSMINAYGMHGRIGSAISTFNQ 595

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           MV+SG +P+ +VFM VL+AC H+G V+EG  YF  M  + V+PN E + C +DLL R+G 
Sbjct: 596 MVESGTKPNEVVFMNVLSACGHSGSVEEGKYYFNLMKSFGVSPNSEHFACFIDLLSRSGD 655

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           +KEAY  IK MPF  D SVWG L+  C+ H+  ++ K     + D+  +  G Y +LSNI
Sbjct: 656 LKEAYRTIKEMPFLADASVWGSLVNGCRIHQKMDIIKAIKNDLSDIVTDDTGYYTLLSNI 715

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           YA EG+WEEF + R  M+    KK  G S IE+  KV  F A ++    T  +Y  L  L
Sbjct: 716 YAEEGEWEEFRRLRSAMKSSNLKKVPGYSAIEIDQKVFRFGAGEENRIQTDEIYRFLGNL 775

Query: 586 IRHMNE 591
               NE
Sbjct: 776 QNLTNE 781



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 114/391 (29%), Positives = 211/391 (53%), Gaps = 4/391 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           +++ T+L+  Y   G + +A  +FD MP RD+V+W+ +++         +A  +F  MV 
Sbjct: 136 AVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLENGEVVKALRMFKCMVD 195

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           + V P+A T+ SV++ C  +  L  A  VHG   ++  +    + NSL+ +Y+ C   + 
Sbjct: 196 DGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDLDETLCNSLLTMYSKCGDLLS 255

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           + R +F  +  KN VSWT +I+ Y         L  F EM+  G+E N  +    + +C 
Sbjct: 256 SER-IFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMIKSGIEPNLVTLYSVLSSCG 314

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMN-SILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
             G +  GK +H   ++     N   ++ +++++Y     LSD       +++++++ WN
Sbjct: 315 LIGLIREGKSVHGFAVRRELDPNYESLSLALVELYAECGKLSDCETVLRVVSDRNIVAWN 374

Query: 285 TIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           ++I+ Y   G   + L +F +M ++R  P+ FT  S I+AC     +  G+Q+H  ++R 
Sbjct: 375 SLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSISACENAGLVPLGKQIHGHVIRT 434

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
            +     + N+LIDMY+K G++  +  +F+++  R +VTW SM+ G+  +G+  EAI LF
Sbjct: 435 DVSDEF-VQNSLIDMYSKSGSVDSASTVFNQIKHRSVVTWNSMLCGFSQNGNSVEAISLF 493

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434
           D M  S +  + + F+AV+ ACS  G +++G
Sbjct: 494 DYMYHSYLEMNEVTFLAVIQACSSIGSLEKG 524



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 122/423 (28%), Positives = 222/423 (52%), Gaps = 5/423 (1%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T LI+SY   G  + +R +F+  P  D   + V+I      +  + A  ++  +V     
Sbjct: 38  TKLIESYAFMGSPDSSRLVFEAFPYPDSFMYGVLIKCNVWCHLLDAAIDLYHRLVSETTQ 97

Query: 110 PNAFTLSSVLKACKGMKS-LSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
            + F   SVL+AC G +  LS    VHG  IK G++    +E SL+ +Y     ++ +A 
Sbjct: 98  ISKFVFPSVLRACAGSREHLSVGGKVHGRIIKGGVDDDAVIETSLLCMYGQTG-NLSDAE 156

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            VF+ M  ++ V+W+TL++    +G     L +FK M+ +GVE +  +    V  CA  G
Sbjct: 157 KVFDGMPVRDLVAWSTLVSSCLENGEVVKALRMFKCMVDDGVEPDAVTMISVVEGCAELG 216

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            +   + +H  + +  F  +  + NS+L MY +   L  + + F+++ +K+ ++W  +I+
Sbjct: 217 CLRIARSVHGQITRKMFDLDETLCNSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMIS 276

Query: 289 GYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
            Y +   SE  L  FS+M      PN  T  S++++C  +  +  G+ VH   VRR LD 
Sbjct: 277 SYNRGEFSEKALRSFSEMIKSGIEPNLVTLYSVLSSCGLIGLIREGKSVHGFAVRRELDP 336

Query: 348 NL-ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
           N  +L+ AL+++YA+CG +SD + +   +SDR++V W S++  Y   G   +A+ LF +M
Sbjct: 337 NYESLSLALVELYAECGKLSDCETVLRVVSDRNIVAWNSLISLYAHRGMVIQALGLFRQM 396

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
           V   ++PD     + ++AC +AGLV  G +    +   +V+ ++ +   ++D+  ++G V
Sbjct: 397 VTQRIKPDAFTLASSISACENAGLVPLGKQIHGHVIRTDVS-DEFVQNSLIDMYSKSGSV 455

Query: 467 KEA 469
             A
Sbjct: 456 DSA 458



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 195/377 (51%), Gaps = 19/377 (5%)

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
           S D++RLVF    + +   +  LI            + ++  ++ E  +++ + F   +R
Sbjct: 49  SPDSSRLVFEAFPYPDSFMYGVLIKCNVWCHLLDAAIDLYHRLVSETTQISKFVFPSVLR 108

Query: 223 ACA-STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
           ACA S   +S G  +H  +IK G   +  +  S+L MY +   LSDA + FD M  +DL+
Sbjct: 109 ACAGSREHLSVGGKVHGRIIKGGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLV 168

Query: 282 TWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
            W+T+++   ++G   + L MF  M  +   P+  T  S++  CA L  L   + VH  I
Sbjct: 169 AWSTLVSSCLENGEVVKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQI 228

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
            R+  D +  L N+L+ MY+KCG++  S++IF +++ ++ V+WT+M+  Y      ++A+
Sbjct: 229 TRKMFDLDETLCNSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRGEFSEKAL 288

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV----NPNKE-IYGC 455
             F EM+KSG+ P+ +   +VL++C   GL+ EG    KS++ + V    +PN E +   
Sbjct: 289 RSFSEMIKSGIEPNLVTLYSVLSSCGLIGLIREG----KSVHGFAVRRELDPNYESLSLA 344

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR---LPNLGKLAALRVLDLK 512
           +V+L    G++ +   +++ +  + +   W  L+ +   HR   +  LG    +    +K
Sbjct: 345 LVELYAECGKLSDCETVLRVVSDR-NIVAWNSLI-SLYAHRGMVIQALGLFRQMVTQRIK 402

Query: 513 PNMMGTYIILSNIYAAE 529
           P+    + + S+I A E
Sbjct: 403 PD---AFTLASSISACE 416


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 201/592 (33%), Positives = 320/592 (54%), Gaps = 54/592 (9%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV-RNEVNP 110
           ++  Y     + +AR LFD MPE+DVVSW  M++GY      ++A  VF  M  +N ++ 
Sbjct: 101 MLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISW 160

Query: 111 N----AFTLSSVLKACKGM-KSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           N    A+  S  L+  + + +S S+  L+    +  G     YV+ +++           
Sbjct: 161 NGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGG-----YVKRNMLG---------- 205

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +AR +F+ +  ++ +SW T+I+GYA  G+      +F+E  +  V    ++++  V A  
Sbjct: 206 DARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDV----FTWTAMVYAYV 261

Query: 226 STGWVSFGKLI------------------HAAVIKHGFGS---------NLPVMNSILDM 258
             G +   + +                  +A   +   G          N+   N ++  
Sbjct: 262 QDGMLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISG 321

Query: 259 YCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTF 317
           YC+   L+ A   FD M ++D ++W  IIAGY ++G   E +NM  +MK +  S N  TF
Sbjct: 322 YCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTF 381

Query: 318 TSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD 377
              ++ACA +AAL  G+QVH  +VR G +    + NAL+ MY KCG I ++  +F  +  
Sbjct: 382 CCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQH 441

Query: 378 RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY 437
           +D+V+W +M+ GY  HG G++A+ +F+ M+ +GV+PD I  + VL+ACSH GL D G +Y
Sbjct: 442 KDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEY 501

Query: 438 FKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR 496
           F SMN DY + PN + Y C++DLLGRAG ++EA  LI++MPF+PD + WG LLGA + H 
Sbjct: 502 FHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHG 561

Query: 497 LPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWI 556
              LG+ AA  V  ++P+  G Y++LSN+YAA G+W + +K R  MR +G +K  G SW+
Sbjct: 562 NMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWV 621

Query: 557 EVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           EV++K+  F   D        +Y  LE L   M    Y      ++HD+E E
Sbjct: 622 EVQNKIHTFTVGDCFHPEKGRIYAFLEELDLKMKHEGYVSSTKLVLHDVEEE 673



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 109/485 (22%), Positives = 203/485 (41%), Gaps = 81/485 (16%)

Query: 39  PLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWT 98
           P      ++  T  I ++   G  + A  +FD MP R+ VS+  MI+GY      + A  
Sbjct: 26  PHFEDPHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARD 85

Query: 99  VFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA 158
           +F +M   ++    F+ + +L                            Y  N       
Sbjct: 86  LFDKMPHKDL----FSWNLMLTG--------------------------YARNR------ 109

Query: 159 TCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFS 218
                + +AR++F+ M  K+ VSW  +++GY  SG+      VF  M        P+  S
Sbjct: 110 ----RLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRM--------PHKNS 157

Query: 219 IAVRACASTGWVSFGKLIHA-AVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE 277
           I+     +  +V  G+L  A  + +      L   N ++  Y + + L DA Q FD++  
Sbjct: 158 ISWNGLLA-AYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPV 216

Query: 278 KDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
           +DLI+WNT+I+GY + G    L+   ++  E    + FT+T+++ A      L   ++V 
Sbjct: 217 RDLISWNTMISGYAQDGD---LSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVF 273

Query: 338 AGI-VRRGLDGNLALA--------------------------NALIDMYAKCGNISDSQK 370
             +  +R +  N+ +A                          N +I  Y + G+++ ++ 
Sbjct: 274 DEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQNGDLAQARN 333

Query: 371 IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           +F  M  RD V+W +++ GY  +G  +EA+ +  EM + G   +R  F   L+AC+    
Sbjct: 334 LFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAA 393

Query: 431 VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490
           ++ G +    +          +   +V +  + G + EAY++ + +  K D   W  +L 
Sbjct: 394 LELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHK-DIVSWNTMLA 452

Query: 491 ACKEH 495
               H
Sbjct: 453 GYARH 457



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 162/376 (43%), Gaps = 70/376 (18%)

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           D A  VF+ M  +N VS+  +I+GY  +                        FS+A    
Sbjct: 50  DLALCVFDAMPLRNSVSYNAMISGYLRNAK----------------------FSLARDL- 86

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
                  F K+ H          +L   N +L  Y R   L DA   FD M EKD+++WN
Sbjct: 87  -------FDKMPH---------KDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWN 130

Query: 285 TIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +++GY +SG   E  ++F +M  +    N  ++  ++AA      L   ++    +   
Sbjct: 131 AMLSGYVRSGHVDEARDVFDRMPHK----NSISWNGLLAAYVRSGRLEEARR----LFES 182

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
             D  L   N L+  Y K   + D++++F ++  RDL++W +M+ GY   G   +A  LF
Sbjct: 183 KSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLF 242

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE--IYGCVVDLLG 461
           +E   S VR D   + A++ A    G++DE  + F  M      P K    Y  ++    
Sbjct: 243 EE---SPVR-DVFTWTAMVYAYVQDGMLDEARRVFDEM------PQKREMSYNVMIAGYA 292

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLL-GACKEHRLPNLGKLAALR-VLDLKPNMMG-T 518
           +  R+    EL + MPF P+   W  ++ G C+       G LA  R + D+ P     +
Sbjct: 293 QYKRMDMGRELFEEMPF-PNIGSWNIMISGYCQN------GDLAQARNLFDMMPQRDSVS 345

Query: 519 YIILSNIYAAEGKWEE 534
           +  +   YA  G +EE
Sbjct: 346 WAAIIAGYAQNGLYEE 361



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/285 (21%), Positives = 123/285 (43%), Gaps = 63/285 (22%)

Query: 272 FDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAAL 330
           FD M  ++ +++N +I+GY ++   S   ++F KM  +    + F++             
Sbjct: 56  FDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHK----DLFSW------------- 98

Query: 331 SCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY 390
                                 N ++  YA+   + D++ +F  M ++D+V+W +M+ GY
Sbjct: 99  ----------------------NLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGY 136

Query: 391 GAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK 450
              GH  EA ++FD M       + I +  +L A   +G ++E  + F+S +D+      
Sbjct: 137 VRSGHVDEARDVFDRMPHK----NSISWNGLLAAYVRSGRLEEARRLFESKSDW------ 186

Query: 451 EIYGCVVDLLGRAGR--VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLA-ALR 507
           E+  C   + G   R  + +A +L   +P + D   W  ++    +      G L+ A R
Sbjct: 187 ELISCNCLMGGYVKRNMLGDARQLFDQIPVR-DLISWNTMISGYAQD-----GDLSQARR 240

Query: 508 VLDLKP-NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEV 551
           + +  P   + T+  +   Y  +G  +E    R++   M  K+E+
Sbjct: 241 LFEESPVRDVFTWTAMVYAYVQDGMLDE---ARRVFDEMPQKREM 282



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 40/76 (52%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++   L+  Y   G I+EA  +F  +  +D+VSW  M+AGY       QA TVF  M+  
Sbjct: 414 LVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITA 473

Query: 107 EVNPNAFTLSSVLKAC 122
            V P+  T+  VL AC
Sbjct: 474 GVKPDEITMVGVLSAC 489


>gi|242088973|ref|XP_002440319.1| hypothetical protein SORBIDRAFT_09g029650 [Sorghum bicolor]
 gi|241945604|gb|EES18749.1| hypothetical protein SORBIDRAFT_09g029650 [Sorghum bicolor]
          Length = 671

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 201/548 (36%), Positives = 306/548 (55%), Gaps = 13/548 (2%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T L  +Y   G +E A  + DE P ++VVSWT ++A        + A   F EM  + V+
Sbjct: 100 TALADAYAKAGSLELALQVLDETPCKNVVSWTTLVASLARGGRRHDALRRFAEMRASGVD 159

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
            ++   ++ L AC G    +    VH +  K GL+   +V N+L  +YA C   +D A  
Sbjct: 160 CDSHACAAALTACAGAGLRARGREVHALCAKLGLDAVPFVANALAALYARCG-DVDRALA 218

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE----GVEMNPYSFSIAVRACA 225
               M  ++  +WTTLI  Y  +G     +  F  ML          N Y+FS  + AC 
Sbjct: 219 AVGRMGTRDVAAWTTLIASYVQTGRAEEAIEAFVRMLRNESSNSASPNEYTFSAVIAACP 278

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           +      G+ +HA   + G      V NS++ +Y R   LS A+  F E   KD+++W+T
Sbjct: 279 NIERAYLGEQLHAQAARRGLSHTRSVANSLVKLYARRGRLSAADAIFRENAVKDVVSWST 338

Query: 286 IIAGYEKSG-SSECLNMFSKMK--SERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           II+GY + G   E   +FS+M+  S    PN FT  S+ + CA+ A+L  G+Q+HA  V 
Sbjct: 339 IISGYAQEGLVEESFALFSEMRHHSSCPRPNEFTLASLFSVCASAASLYAGRQLHALAVA 398

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            GL+ +  + +AL++MY K G+++D+  IFS  +  D+++WT+M++G+  HGH KEA +L
Sbjct: 399 AGLEHHAMVRSALVNMYGKSGSMTDANVIFSSRTRDDVISWTAMIVGHAEHGHSKEAFQL 458

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLG 461
           F+EM + G++PD + F+ VLTACSHAG V+ GL+Y  +MN  Y V P KE YGCVVDLL 
Sbjct: 459 FEEMCRVGLKPDHVTFIGVLTACSHAGEVELGLRYLNAMNKCYVVEPEKEHYGCVVDLLA 518

Query: 462 RAGRVKEAYELIKSMPFK-PDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520
           RAGR+ EA ELI  +     D  VW  LL AC        GK AA R+++ +P   G ++
Sbjct: 519 RAGRIHEAEELIGRIAADGRDGVVWTSLLRACAARGAEETGKKAAERMMEAEPWGSGAHV 578

Query: 521 ILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEV--RDKVCG-FIANDKMGSHTQY 577
            ++N+YA++G+W E A+ R +M+  G  K  G S +EV   D+  G F++ D+   H   
Sbjct: 579 AMANLYASKGQWREAAQERHLMKQKGVLKGAGWSSVEVGGDDRGVGVFVSGDRTNPHDNA 638

Query: 578 VYGVLEML 585
           +Y +LE++
Sbjct: 639 IYMMLELI 646



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 139/483 (28%), Positives = 222/483 (45%), Gaps = 64/483 (13%)

Query: 72  MPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNA----FTLSSVLKACKGMKS 127
           MP RD V++  +++GY        A  +F    R    P+A    F LS VLKAC    +
Sbjct: 1   MPHRDEVAYATLLSGYAMAADFPGAMALFSRF-RASYPPHAAADPFILSPVLKACASASA 59

Query: 128 LSNAALVHGMA-----------------IKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
            + A     +                  +      S++V  +L D YA    S++ A  V
Sbjct: 60  SAAAGAGASVGLLHLPQAAAAAALHAFAVHSSAVSSVFVSTALADAYAKAG-SLELALQV 118

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
            ++   KN VSWTTL+   A  G  +  L  F EM   GV+ + ++ + A+ ACA  G  
Sbjct: 119 LDETPCKNVVSWTTLVASLARGGRRHDALRRFAEMRASGVDCDSHACAAALTACAGAGLR 178

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
           + G+ +HA   K G  +   V N++  +Y R   +  A      M  +D+  W T+IA Y
Sbjct: 179 ARGREVHALCAKLGLDAVPFVANALAALYARCGDVDRALAAVGRMGTRDVAAWTTLIASY 238

Query: 291 EKSG-SSECLNMFSKM----KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
            ++G + E +  F +M     S   SPN +TF+++IAAC  +     G+Q+HA   RRGL
Sbjct: 239 VQTGRAEEAIEAFVRMLRNESSNSASPNEYTFSAVIAACPNIERAYLGEQLHAQAARRGL 298

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
               ++AN+L+ +YA+ G +S +  IF E + +D+V+W++++ GY   G  +E+  LF E
Sbjct: 299 SHTRSVANSLVKLYARRGRLSAADAIFRENAVKDVVSWSTIISGYAQEGLVEESFALFSE 358

Query: 406 MV--KSGVRPDRIVFMAVLTACS-----------HAGLVDEGLKYFK------------- 439
           M    S  RP+     ++ + C+           HA  V  GL++               
Sbjct: 359 MRHHSSCPRPNEFTLASLFSVCASAASLYAGRQLHALAVAAGLEHHAMVRSALVNMYGKS 418

Query: 440 -SMNDYNV----NPNKEIYGCVVDLLGRA--GRVKEAYELIKSM---PFKPDESVWGPLL 489
            SM D NV        ++      ++G A  G  KEA++L + M     KPD   +  +L
Sbjct: 419 GSMTDANVIFSSRTRDDVISWTAMIVGHAEHGHSKEAFQLFEEMCRVGLKPDHVTFIGVL 478

Query: 490 GAC 492
            AC
Sbjct: 479 TAC 481



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 39/77 (50%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           +++ + L+  Y   G + +A  +F      DV+SWT MI G+       +A+ +F EM R
Sbjct: 405 AMVRSALVNMYGKSGSMTDANVIFSSRTRDDVISWTAMIVGHAEHGHSKEAFQLFEEMCR 464

Query: 106 NEVNPNAFTLSSVLKAC 122
             + P+  T   VL AC
Sbjct: 465 VGLKPDHVTFIGVLTAC 481


>gi|357168001|ref|XP_003581434.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Brachypodium distachyon]
          Length = 757

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 187/558 (33%), Positives = 309/558 (55%), Gaps = 5/558 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I+   L+  Y   GL+ +   LF  M E+D +SW  +IAG+    C  +A  +F EMV  
Sbjct: 178 IVQNALVTMYSKSGLVADGFLLFGRMREKDPISWGSIIAGFAQQGCEMEALQIFREMVAE 237

Query: 107 EVN-PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
            ++ PN F   SV  AC  + SL     +H +++K  L+ + Y   SL D+YA C   ++
Sbjct: 238 GMHHPNEFHFGSVFSACGVLGSLEYGEQIHSLSVKYRLDHNSYAGCSLSDMYARC-KKLE 296

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +A+ VF  +   + VSW ++I   +  G     + +  EM   G+  +  +    + AC 
Sbjct: 297 SAKRVFYGIDAPDLVSWNSIINACSVEGLLSEAMVLLSEMRGSGLRPDGITVRGLLCACV 356

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               +  G+L+H+ ++K G   ++ V NS+L MY R    S A   F E  ++D++TWN+
Sbjct: 357 GCDAIQHGRLMHSYLVKLGLDGDVSVCNSLLSMYARCMDFSSAMDVFHETRDRDVVTWNS 416

Query: 286 IIAGYEKSGSSECL-NMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           I+    +    E +  +F+ ++    S +  +  ++++A A L      +QVH    + G
Sbjct: 417 ILTACVQHQHLEVVFKLFNLLQRSLPSLDRISLNNVLSASAELGYFEMVKQVHTCTFKVG 476

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEM-SDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           L  +  L+N LID YAKCG++ D+ K+F  M ++ D+ +W+S+++GY   G+ ++A++LF
Sbjct: 477 LVNDTMLSNGLIDTYAKCGSLDDAVKLFEMMGTNSDVFSWSSLIVGYAQSGYPRKALDLF 536

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGR 462
             M   GVRP+ + F+ VLTACS  GLVDEG  Y+  M  ++ V P +E   CV+DLL R
Sbjct: 537 ARMRNLGVRPNHVTFVGVLTACSRVGLVDEGCYYYSIMEPEHGVLPTREHCSCVIDLLAR 596

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AGR+ EA + +  MPF+PD  +W  LL   K H    +G+ AA  +L++ P+    Y++L
Sbjct: 597 AGRLTEAAKFVDQMPFEPDIVMWKTLLAGSKTHNDVEMGRRAAEGILNIDPSHSAAYVLL 656

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
            NIY+A G W EFA+ +K MR  G KK  G SW++++ ++  FI  D+    ++ +Y +L
Sbjct: 657 CNIYSASGDWNEFARLKKAMRSSGVKKSPGKSWVKLKGELKVFIVEDRSHPESEEIYTML 716

Query: 583 EMLIRHMNETAYEPDIDC 600
           E++   M +  Y P + C
Sbjct: 717 ELVGMEMIKAGYVPKLSC 734



 Score =  225 bits (573), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 144/510 (28%), Positives = 250/510 (49%), Gaps = 8/510 (1%)

Query: 37  DPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQA 96
           DP L+    ++L  +LI  Y      E AR +FDEMP ++ VSW  +IA +        A
Sbjct: 69  DPNLVRN--TVLNNHLITMYGRCAAPESARLVFDEMPAKNPVSWASVIAAHAQNRRSTDA 126

Query: 97  WTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDV 156
             +F  M+R+   P+ F L S ++AC  +  +     VH  A+K      + V+N+L+ +
Sbjct: 127 LGLFSSMLRSGTAPDQFALGSTVRACAELGDIGVGRQVHAQAMKSENGSDLIVQNALVTM 186

Query: 157 YATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEM-NPY 215
           Y+   +  D   L+F  M+ K+ +SW ++I G+A  G     L +F+EM+ EG+   N +
Sbjct: 187 YSKSGLVADGF-LLFGRMREKDPISWGSIIAGFAQQGCEMEALQIFREMVAEGMHHPNEF 245

Query: 216 SFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM 275
            F     AC   G + +G+ IH+  +K+    N     S+ DMY R   L  A + F  +
Sbjct: 246 HFGSVFSACGVLGSLEYGEQIHSLSVKYRLDHNSYAGCSLSDMYARCKKLESAKRVFYGI 305

Query: 276 TEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334
              DL++WN+II      G  SE + + S+M+     P+  T   ++ AC    A+  G+
Sbjct: 306 DAPDLVSWNSIINACSVEGLLSEAMVLLSEMRGSGLRPDGITVRGLLCACVGCDAIQHGR 365

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
            +H+ +V+ GLDG++++ N+L+ MYA+C + S +  +F E  DRD+VTW S++     H 
Sbjct: 366 LMHSYLVKLGLDGDVSVCNSLLSMYARCMDFSSAMDVFHETRDRDVVTWNSILTACVQHQ 425

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG 454
           H +   +LF+ + +S    DRI    VL+A +  G  +   +         +  +  +  
Sbjct: 426 HLEVVFKLFNLLQRSLPSLDRISLNNVLSASAELGYFEMVKQVHTCTFKVGLVNDTMLSN 485

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLK 512
            ++D   + G + +A +L + M    D   W  L+    +   P   L   A +R L ++
Sbjct: 486 GLIDTYAKCGSLDDAVKLFEMMGTNSDVFSWSSLIVGYAQSGYPRKALDLFARMRNLGVR 545

Query: 513 PNMMGTYIILSNIYAAEGKWEEFAKFRKIM 542
           PN + T++ +    +  G  +E   +  IM
Sbjct: 546 PNHV-TFVGVLTACSRVGLVDEGCYYYSIM 574



 Score =  194 bits (494), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 127/426 (29%), Positives = 212/426 (49%), Gaps = 11/426 (2%)

Query: 122 CKGMKSLSNAALVHGMAIKE---GLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKN 178
           C  +++L    LVH   +      L  +  + N L+ +Y  C  + ++ARLVF++M  KN
Sbjct: 48  CSRLRALCLGCLVHRHLLASPDPNLVRNTVLNNHLITMYGRCA-APESARLVFDEMPAKN 106

Query: 179 DVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHA 238
            VSW ++I  +A +      LG+F  ML  G   + ++    VRACA  G +  G+ +HA
Sbjct: 107 PVSWASVIAAHAQNRRSTDALGLFSSMLRSGTAPDQFALGSTVRACAELGDIGVGRQVHA 166

Query: 239 AVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-E 297
             +K   GS+L V N+++ MY +   ++D    F  M EKD I+W +IIAG+ + G   E
Sbjct: 167 QAMKSENGSDLIVQNALVTMYSKSGLVADGFLLFGRMREKDPISWGSIIAGFAQQGCEME 226

Query: 298 CLNMFSKMKSERF-SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALI 356
            L +F +M +E    PN F F S+ +AC  L +L  G+Q+H+  V+  LD N     +L 
Sbjct: 227 ALQIFREMVAEGMHHPNEFHFGSVFSACGVLGSLEYGEQIHSLSVKYRLDHNSYAGCSLS 286

Query: 357 DMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI 416
           DMYA+C  +  ++++F  +   DLV+W S++      G   EA+ L  EM  SG+RPD I
Sbjct: 287 DMYARCKKLESAKRVFYGIDAPDLVSWNSIINACSVEGLLSEAMVLLSEMRGSGLRPDGI 346

Query: 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
               +L AC     +  G      +    ++ +  +   ++ +  R      A ++    
Sbjct: 347 TVRGLLCACVGCDAIQHGRLMHSYLVKLGLDGDVSVCNSLLSMYARCMDFSSAMDVFHET 406

Query: 477 PFKPDESVWGPLLGACKEHR-LPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEF 535
             + D   W  +L AC +H+ L  + KL  L    L P++    I L+N+ +A  +   F
Sbjct: 407 RDR-DVVTWNSILTACVQHQHLEVVFKLFNLLQRSL-PSL--DRISLNNVLSASAELGYF 462

Query: 536 AKFRKI 541
              +++
Sbjct: 463 EMVKQV 468


>gi|413932452|gb|AFW67003.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 719

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 191/544 (35%), Positives = 305/544 (56%), Gaps = 12/544 (2%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI+ Y   G +  A  +F  M   DVV +T +++         +A  V  +M R  + PN
Sbjct: 177 LIELYSRCGSLRAAEEVFRRMEAPDVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPN 236

Query: 112 AFTLSSVLKAC-KGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
             T++S+L  C +G+        +HG  +K     S+Y   +L+D Y+        A+ V
Sbjct: 237 EHTMTSMLAECPRGI-----GEQIHGYMLKVMGSQSVYASTALIDFYSRYG-DFGTAKTV 290

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F +++ KN VSW +++      G     L VF EM+ EGV+ N ++FSIA+ AC S   V
Sbjct: 291 FENLESKNVVSWCSMMQLCIRDGRLDDALRVFSEMISEGVQPNEFAFSIALSACGS---V 347

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
             G+ IH + IK    +++ V N++L MY R   +S+      ++   DL++W   I+  
Sbjct: 348 CLGRQIHCSAIKRDLMTDIRVSNALLSMYGRSGFVSELEAVLGKIENPDLVSWTAAISAN 407

Query: 291 EKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
            ++G SE  + +  +M SE F+PN + F+S +++CA LA L  G+Q+H   ++ G D  +
Sbjct: 408 FQNGFSEKAVALLLQMHSEGFTPNDYAFSSGLSSCADLALLHQGRQLHCLALKLGCDFKV 467

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
              NALI+MY+KCG I  ++  F  M   D+++W S++ G   HG    A+E F EM  S
Sbjct: 468 CTGNALINMYSKCGRIGSARLAFDVMDTHDVMSWNSLIHGLAQHGDANLALETFSEMCSS 527

Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKE 468
             RPD   F++VL  C+HAGLV EG  +F+ M D Y + P    Y C++D+LGR GR  E
Sbjct: 528 DWRPDDSTFLSVLVGCNHAGLVKEGETFFRQMTDRYGLTPTPSHYACMIDMLGRNGRFAE 587

Query: 469 AYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA 528
           A  +I++MPF+PD  +W  LL +CK HR  ++GKLAA ++++L      +Y+++SN+YA 
Sbjct: 588 ALRMIENMPFEPDVLIWKTLLASCKLHRNLDIGKLAADKLMELSERDSASYVLMSNLYAM 647

Query: 529 EGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRH 588
             +W +  + R+ M  +G KK+ G SWIEV+++V  F+A D     +  +Y +L  L+  
Sbjct: 648 HEEWRDAERVRRRMDEIGVKKDAGWSWIEVKNEVNTFVAGDMSHPDSTSIYQMLAELLVV 707

Query: 589 MNET 592
           M +T
Sbjct: 708 MQDT 711



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 114/465 (24%), Positives = 227/465 (48%), Gaps = 18/465 (3%)

Query: 42  PKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFV 101
           P    +L    +      G + +A  LFD MP ++VV+WT  I+G T       A T+F 
Sbjct: 66  PPPDVVLDCKRLDGLMKSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFA 125

Query: 102 EMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
           +M+ + V PN F  ++ L AC    +L     VH +A++ G     ++ + L+++Y+ C 
Sbjct: 126 DMLESGVAPNDFACNAALAACAAAGALGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCG 185

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
            S+  A  VF  M+  + V +T+L++    +G     + V  +M  +G++ N ++ +  +
Sbjct: 186 -SLRAAEEVFRRMEAPDVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSML 244

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
             C        G+ IH  ++K     ++    +++D Y R+     A   F+ +  K+++
Sbjct: 245 AECPR----GIGEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFGTAKTVFENLESKNVV 300

Query: 282 TWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           +W +++    + G   + L +FS+M SE   PN F F+  ++AC ++     G+Q+H   
Sbjct: 301 SWCSMMQLCIRDGRLDDALRVFSEMISEGVQPNEFAFSIALSACGSVC---LGRQIHCSA 357

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           ++R L  ++ ++NAL+ MY + G +S+ + +  ++ + DLV+WT+ +     +G  ++A+
Sbjct: 358 IKRDLMTDIRVSNALLSMYGRSGFVSELEAVLGKIENPDLVSWTAAISANFQNGFSEKAV 417

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY----FKSMNDYNVNPNKEIYGCV 456
            L  +M   G  P+   F + L++C+   L+ +G +      K   D+ V     +   +
Sbjct: 418 ALLLQMHSEGFTPNDYAFSSGLSSCADLALLHQGRQLHCLALKLGCDFKVCTGNALIN-M 476

Query: 457 VDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLG 501
               GR G  + A++++ +     D   W  L+    +H   NL 
Sbjct: 477 YSKCGRIGSARLAFDVMDTH----DVMSWNSLIHGLAQHGDANLA 517



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 132/268 (49%), Gaps = 20/268 (7%)

Query: 265 LSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECL-NMFSKMKSERFSPNCFTFTSIIAA 323
           L DA   FD M  K+++ W T I+G  ++G  E    MF+ M     +PN F   + +AA
Sbjct: 86  LGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADMLESGVAPNDFACNAALAA 145

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTW 383
           CA   AL  G+QVH+  VR G   +  + + LI++Y++CG++  ++++F  M   D+V +
Sbjct: 146 CAAAGALGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSLRAAEEVFRRMEAPDVVGY 205

Query: 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY-FKSMN 442
           TS++     +G    A+++  +M + G++P+     ++L  C   G+ ++   Y  K M 
Sbjct: 206 TSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLAECPR-GIGEQIHGYMLKVMG 264

Query: 443 DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGAC-KEHRLPNLG 501
             +V  +  +    +D   R G    A  + +++  K   S W  ++  C ++ RL +  
Sbjct: 265 SQSVYASTAL----IDFYSRYGDFGTAKTVFENLESKNVVS-WCSMMQLCIRDGRLDD-- 317

Query: 502 KLAALRVLD------LKPNMMGTYIILS 523
              ALRV        ++PN     I LS
Sbjct: 318 ---ALRVFSEMISEGVQPNEFAFSIALS 342


>gi|90657601|gb|ABD96900.1| hypothetical protein [Cleome spinosa]
          Length = 924

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 192/574 (33%), Positives = 322/574 (56%), Gaps = 32/574 (5%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I+ T  +  Y     +++A+ LFD     ++ S+  MI GY+  +   +A  +F ++ ++
Sbjct: 318 IVRTATLDMYAKCNNMQDAQRLFDMSENLNLQSYNAMITGYSQKDNGFRALLLFRKLSKS 377

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            +  +  +LS  L+AC  +K LS    +HG+A K     +I V N+ +D+Y  C  ++D 
Sbjct: 378 SLGFDEISLSGALRACATVKGLSEGLQLHGLATKSNFSRNICVANAFIDMYGKC-EALDE 436

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  VF++M  K+ VSW  +I  +  +      L +   ML  G+E + Y+F   ++ACA 
Sbjct: 437 ACRVFDEMGRKDAVSWNAIIAAHEQNEERSKTLNILVSMLRSGMEPDEYTFGSVLKACAG 496

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR--------------FDCLSDANQYF 272
              ++ G  IH  ++K G  SN  + +S++DMY +              F  + D+N Y 
Sbjct: 497 DS-LNHGMEIHTTIVKLGMASNPYIGSSLVDMYSKCGMIDEAEKIHNKIFIGIGDSNTYS 555

Query: 273 -------------DEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFT 318
                        D   ++ +++WN II+GY  +  S +    F++M     +P+ FT++
Sbjct: 556 EHPETIEEPKGIQDRRVQEMIVSWNAIISGYVMRKQSEDAQRFFNRMMEMGITPDKFTYS 615

Query: 319 SIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR 378
           +++  CA LA++  G+Q+HA ++++ L  ++ + + L+DMY+KCGN+ DS+ +F +   R
Sbjct: 616 TVLDTCANLASIGLGKQIHAHVIKKELQYDVYICSTLVDMYSKCGNLHDSRLMFEKAPIR 675

Query: 379 DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYF 438
           D VTW +M+ GY  HG G+EAI+LF+ MV   + P+   F+++L AC+H GLV+ GL YF
Sbjct: 676 DFVTWNAMICGYAHHGMGEEAIKLFESMVLMNIMPNHATFVSLLRACAHMGLVERGLDYF 735

Query: 439 KSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR- 496
             M  +Y ++P  E Y  +VD+LG++G V++A ELI+ MPF+ D+ +W  LL ACK +R 
Sbjct: 736 HMMKKEYGLDPRLEHYSNMVDILGKSGEVEKALELIQEMPFEADDVIWRTLLSACKINRN 795

Query: 497 LPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWI 556
                ++AA  +L L P    TYI+LSNIYA  G W++ ++ R  MR    KKE G SW+
Sbjct: 796 NVEAAEVAANALLRLDPQDSSTYILLSNIYADAGMWDKASELRTAMRSDKLKKEPGCSWV 855

Query: 557 EVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMN 590
           E+RD+   F+  DK     + +Y  L ++   MN
Sbjct: 856 EIRDEFHTFLVGDKAHPRWKEIYNGLALIYNEMN 889



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 134/473 (28%), Positives = 235/473 (49%), Gaps = 37/473 (7%)

Query: 35  QSDPPLIPKG--PSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFN 91
           Q+   +I  G  P++  +N L++ Y + G +  A  LFD MP RDVVSW  MI GY + N
Sbjct: 70  QAHAHMIISGFRPTVFVSNCLLQLYINCGNLGYATKLFDGMPLRDVVSWNAMIFGYAASN 129

Query: 92  CHNQA--------------WT-----------------VFVEMVRNEVNPNAFTLSSVLK 120
              +A              W                  VF+EM R+ V  +  + S +LK
Sbjct: 130 DMVRASLCFEMMPTRDVVSWNSMLSGFLQTGENLESVKVFIEMGRSGVEFDNKSFSVILK 189

Query: 121 ACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDV 180
            C  +++      +HG+A++ G +  +   ++L+D+YA  C  +D +  VF  M  KN +
Sbjct: 190 VCSILENYKLGTQIHGIALRMGYDTDVVSGSALLDMYAK-CKRLDESFTVFYAMPQKNWI 248

Query: 181 SWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAV 240
           SW+ +I G   +    GGL +FKEM   GV ++   ++  +++CA+   +  G  +HA  
Sbjct: 249 SWSAIIAGCVQNNFLDGGLKMFKEMQKVGVGVSQSIYASVLKSCATLPDLRLGTQLHAHA 308

Query: 241 IKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECL 299
           +K  F  +  V  + LDMY + + + DA + FD     +L ++N +I GY +K      L
Sbjct: 309 LKSDFVKDGIVRTATLDMYAKCNNMQDAQRLFDMSENLNLQSYNAMITGYSQKDNGFRAL 368

Query: 300 NMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMY 359
            +F K+       +  + +  + ACAT+  LS G Q+H    +     N+ +ANA IDMY
Sbjct: 369 LLFRKLSKSSLGFDEISLSGALRACATVKGLSEGLQLHGLATKSNFSRNICVANAFIDMY 428

Query: 360 AKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFM 419
            KC  + ++ ++F EM  +D V+W +++  +  +    + + +   M++SG+ PD   F 
Sbjct: 429 GKCEALDEACRVFDEMGRKDAVSWNAIIAAHEQNEERSKTLNILVSMLRSGMEPDEYTFG 488

Query: 420 AVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
           +VL AC+   L + G++   ++    +  N  I   +VD+  + G + EA ++
Sbjct: 489 SVLKACAGDSL-NHGMEIHTTIVKLGMASNPYIGSSLVDMYSKCGMIDEAEKI 540



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 124/490 (25%), Positives = 216/490 (44%), Gaps = 45/490 (9%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-------------- 160
            S V K C   ++       H   I  G   +++V N L+ +Y  C              
Sbjct: 52  FSFVFKECAKQRAHELGKQAHAHMIISGFRPTVFVSNCLLQLYINCGNLGYATKLFDGMP 111

Query: 161 ----------------CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKE 204
                              M  A L F  M  ++ VSW ++++G+  +G     + VF E
Sbjct: 112 LRDVVSWNAMIFGYAASNDMVRASLCFEMMPTRDVVSWNSMLSGFLQTGENLESVKVFIE 171

Query: 205 MLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264
           M   GVE +  SFS+ ++ C+       G  IH   ++ G+ +++   +++LDMY +   
Sbjct: 172 MGRSGVEFDNKSFSVILKVCSILENYKLGTQIHGIALRMGYDTDVVSGSALLDMYAKCKR 231

Query: 265 LSDANQYFDEMTEKDLITWNTIIAG-YEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAA 323
           L ++   F  M +K+ I+W+ IIAG  + +     L MF +M+      +   + S++ +
Sbjct: 232 LDESFTVFYAMPQKNWISWSAIIAGCVQNNFLDGGLKMFKEMQKVGVGVSQSIYASVLKS 291

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTW 383
           CATL  L  G Q+HA  ++     +  +  A +DMYAKC N+ D+Q++F    + +L ++
Sbjct: 292 CATLPDLRLGTQLHAHALKSDFVKDGIVRTATLDMYAKCNNMQDAQRLFDMSENLNLQSY 351

Query: 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND 443
            +M+ GY    +G  A+ LF ++ KS +  D I     L AC+    + EGL+       
Sbjct: 352 NAMITGYSQKDNGFRALLLFRKLSKSSLGFDEISLSGALRACATVKGLSEGLQLHGLATK 411

Query: 444 YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACK--EHRLPNLG 501
            N + N  +    +D+ G+   + EA  +   M  + D   W  ++ A +  E R   L 
Sbjct: 412 SNFSRNICVANAFIDMYGKCEALDEACRVFDEMG-RKDAVSWNAIIAAHEQNEERSKTLN 470

Query: 502 KLAALRVLDLKPNMMGTYIILSNIYAAEGK-----WEEFAKFRKIMRGMGSKKEVGMSWI 556
            L ++    ++P+    Y   S + A  G       E      K+  GM S   +G S +
Sbjct: 471 ILVSMLRSGMEPD---EYTFGSVLKACAGDSLNHGMEIHTTIVKL--GMASNPYIGSSLV 525

Query: 557 EVRDKVCGFI 566
           ++  K CG I
Sbjct: 526 DMYSK-CGMI 534



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 32/225 (14%)

Query: 308 ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISD 367
           E+ + +   F+ +   CA   A   G+Q HA ++  G    + ++N L+ +Y  CGN+  
Sbjct: 43  EKPATSVANFSFVFKECAKQRAHELGKQAHAHMIISGFRPTVFVSNCLLQLYINCGNLGY 102

Query: 368 SQKIFSEMSDRDLVTWTSMMIGYGAH-------------------------------GHG 396
           + K+F  M  RD+V+W +M+ GY A                                G  
Sbjct: 103 ATKLFDGMPLRDVVSWNAMIFGYAASNDMVRASLCFEMMPTRDVVSWNSMLSGFLQTGEN 162

Query: 397 KEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCV 456
            E++++F EM +SGV  D   F  +L  CS       G +          + +      +
Sbjct: 163 LESVKVFIEMGRSGVEFDNKSFSVILKVCSILENYKLGTQIHGIALRMGYDTDVVSGSAL 222

Query: 457 VDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLG 501
           +D+  +  R+ E++ +  +MP K   S W  ++  C ++   + G
Sbjct: 223 LDMYAKCKRLDESFTVFYAMPQKNWIS-WSAIIAGCVQNNFLDGG 266


>gi|50080253|gb|AAT69588.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|222632650|gb|EEE64782.1| hypothetical protein OsJ_19638 [Oryza sativa Japonica Group]
          Length = 870

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 198/547 (36%), Positives = 308/547 (56%), Gaps = 4/547 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+  Y   G I  AR +FD M   D +SW  MIAG+   +       +F+ M+ NEV PN
Sbjct: 238 LVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPN 297

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
             T++SV  A   +  +  A  +HG A+K G    +   NSL+ +Y T    M +A  +F
Sbjct: 298 LMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMY-TSLGRMGDAGKIF 356

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           + M+ K+ +SWT +I+GY  +G     L V+  M L  V  +  + + A+ ACA  G + 
Sbjct: 357 SRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLD 416

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY- 290
            G  +H      GF   + V N++L+MY +   +  A + F  M EKD+++W+++IAG+ 
Sbjct: 417 VGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFC 476

Query: 291 EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
               S E L  F  M      PN  TF + ++ACA   AL  G+++HA ++R G+     
Sbjct: 477 FNHRSFEALYYFRYMLGH-VKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGY 535

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           + NAL+D+Y KCG  S +   FS  S++D+V+W  M+ G+ AHG G  A+ LF++MV+ G
Sbjct: 536 VPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMG 595

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEA 469
             PD + F+A+L ACS AG+V +G + F  M + +++ PN + Y C+VDLL R G++ EA
Sbjct: 596 EHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEA 655

Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529
           Y LI  MP KPD +VWG LL  C+ HR   LG+LAA  +L+L+PN +  +++L ++Y   
Sbjct: 656 YNLINRMPIKPDAAVWGALLNGCRIHRHVELGELAAKVILELEPNDVAYHVLLCDLYTDA 715

Query: 530 GKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHM 589
           GKW + A+ RK MR  G +++ G SW+EV+     F+ +D+     + +  VL  +   M
Sbjct: 716 GKWAQVARVRKTMREKGLEQDNGCSWVEVKGVTHAFLTDDESHPQIKEINVVLHGIYERM 775

Query: 590 NETAYEP 596
               + P
Sbjct: 776 KACGFAP 782



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 129/443 (29%), Positives = 221/443 (49%), Gaps = 4/443 (0%)

Query: 60  GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119
           G I  A  +F +MPERDV SW VM+ GY       +A  ++  M+   + P+ +T   VL
Sbjct: 145 GEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVL 204

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179
           + C G+        VH   ++ G    + V N+L+ +YA C   +  AR VF+ M   + 
Sbjct: 205 RTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCG-DIVAARKVFDGMAVTDC 263

Query: 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAA 239
           +SW  +I G+  +     GL +F  ML   V+ N  + +    A      V F K +H  
Sbjct: 264 ISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGF 323

Query: 240 VIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSEC 298
            +K GF  ++   NS++ MY     + DA + F  M  KD ++W  +I+GYEK+G   + 
Sbjct: 324 AVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKA 383

Query: 299 LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDM 358
           L +++ M+    SP+  T  S +AACA L  L  G ++H     +G    + +ANAL++M
Sbjct: 384 LEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEM 443

Query: 359 YAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVF 418
           YAK  +I  + ++F  M+++D+V+W+SM+ G+  +    EA+  F  M+   V+P+ + F
Sbjct: 444 YAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYMLGH-VKPNSVTF 502

Query: 419 MAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPF 478
           +A L+AC+  G +  G +    +    +     +   ++DL  + G+   A+    S+  
Sbjct: 503 IAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQF-SVHS 561

Query: 479 KPDESVWGPLLGACKEHRLPNLG 501
           + D   W  +L     H L ++ 
Sbjct: 562 EKDVVSWNIMLSGFVAHGLGDIA 584



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 184/369 (49%), Gaps = 8/369 (2%)

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +A  VF  M  ++  SW  ++ GY   G     L ++  ML  G+  + Y+F   +R C 
Sbjct: 149 HAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCG 208

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
                  G+ +HA V++ GFG  + V+N+++ MY +   +  A + FD M   D I+WN 
Sbjct: 209 GIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNA 268

Query: 286 IIAGYEKSGSSEC-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +IAG+ ++   E  L +F  M      PN  T TS+  A   L+ +   +++H   V+RG
Sbjct: 269 MIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRG 328

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
              ++A  N+LI MY   G + D+ KIFS M  +D ++WT+M+ GY  +G   +A+E++ 
Sbjct: 329 FAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYA 388

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
            M    V PD +   + L AC+  G +D G+K  +   +        +   ++++  ++ 
Sbjct: 389 LMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSK 448

Query: 465 RVKEAYELIKSMPFKPDESVWGPLL-GACKEHRLPNLGKLAALRVL--DLKPNMMGTYII 521
            + +A E+ K M  K D   W  ++ G C  HR  +   L   R +   +KPN + T+I 
Sbjct: 449 HIDKAIEVFKFMAEK-DVVSWSSMIAGFCFNHR--SFEALYYFRYMLGHVKPNSV-TFIA 504

Query: 522 LSNIYAAEG 530
             +  AA G
Sbjct: 505 ALSACAATG 513



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 102/348 (29%), Positives = 185/348 (53%), Gaps = 5/348 (1%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
           +LI+ Y   G + +A  +F  M  +D +SWT MI+GY      ++A  V+  M  + V+P
Sbjct: 338 SLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSP 397

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           +  T++S L AC  +  L     +H +A  +G    + V N+L+++YA     +D A  V
Sbjct: 398 DDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAK-SKHIDKAIEV 456

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F  M  K+ VSW+++I G+  +   +  L  F+ ML   V+ N  +F  A+ ACA+TG +
Sbjct: 457 FKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYMLGH-VKPNSVTFIAALSACAATGAL 515

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
             GK IHA V++ G GS   V N++LD+Y +    S A   F   +EKD+++WN +++G+
Sbjct: 516 RSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGF 575

Query: 291 EKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQV-HAGIVRRGLDGN 348
              G  +  L++F++M      P+  TF +++ AC+    +  G ++ H    +  +  N
Sbjct: 576 VAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPN 635

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHGH 395
           L     ++D+ ++ G ++++  + + M  + D   W +++ G   H H
Sbjct: 636 LKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRH 683



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 134/252 (53%), Gaps = 10/252 (3%)

Query: 253 NSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFS 311
           N++L M  RF  +  A + F +M E+D+ +WN ++ GY K G   E L+++ +M      
Sbjct: 135 NAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMR 194

Query: 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKI 371
           P+ +TF  ++  C  +     G++VHA ++R G    + + NAL+ MYAKCG+I  ++K+
Sbjct: 195 PDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKV 254

Query: 372 FSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLV 431
           F  M+  D ++W +M+ G+  +   +  +ELF  M+++ V+P+ +   +V  A   +G++
Sbjct: 255 FDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVA---SGML 311

Query: 432 DEGLKYFKSMNDYNVNPNKEI----YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGP 487
            E + + K M+ + V     I       ++ +    GR+ +A ++   M  K D   W  
Sbjct: 312 SE-VGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETK-DAMSWTA 369

Query: 488 LLGACKEHRLPN 499
           ++   +++  P+
Sbjct: 370 MISGYEKNGFPD 381



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 115/245 (46%), Gaps = 4/245 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++A  L++ Y     I++A  +F  M E+DVVSW+ MIAG+  FN  +     +   +  
Sbjct: 435 VVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFC-FNHRSFEALYYFRYMLG 493

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V PN+ T  + L AC    +L +   +H   ++ G+    YV N+L+D+Y  C      
Sbjct: 494 HVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCG-QTSY 552

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A   F+    K+ VSW  +++G+   G G   L +F +M+  G   +  +F   + AC+ 
Sbjct: 553 AWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSR 612

Query: 227 TGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLITWN 284
            G V  G +L H    K     NL     ++D+  R   L++A    + M  K D   W 
Sbjct: 613 AGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWG 672

Query: 285 TIIAG 289
            ++ G
Sbjct: 673 ALLNG 677



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 108/247 (43%), Gaps = 8/247 (3%)

Query: 305 MKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGN 364
           ++S    P+   + ++   C    A+  G +  A          L L NA++ M  + G 
Sbjct: 87  LESSPEPPDEGAYVALFRLCEWRRAVDAGMRACARADAEHPSFGLRLGNAMLSMLVRFGE 146

Query: 365 ISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTA 424
           I  + ++F++M +RD+ +W  M+ GYG  G  +EA++L+  M+ +G+RPD   F  VL  
Sbjct: 147 IWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRT 206

Query: 425 CSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESV 484
           C        G +    +  +      ++   +V +  + G +  A ++   M    D   
Sbjct: 207 CGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVT-DCIS 265

Query: 485 WGPLLGACKEHRLPNLGKLAALRVL--DLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIM 542
           W  ++    E+     G    L +L  +++PN+M     ++++  A G   E   F K M
Sbjct: 266 WNAMIAGHFENHECEAGLELFLTMLENEVQPNLM----TITSVTVASGMLSEVG-FAKEM 320

Query: 543 RGMGSKK 549
            G   K+
Sbjct: 321 HGFAVKR 327


>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 623

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 198/582 (34%), Positives = 318/582 (54%), Gaps = 24/582 (4%)

Query: 22  IKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWT 81
           + Q    +  +  Q +  + PK  +I AT    +Y        AR LFD++P+ ++  W 
Sbjct: 54  VHQIQAQIIANGFQYNEYITPKLVTICATLKRMTY--------ARQLFDQIPDPNIALWN 105

Query: 82  VMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKE 141
            M  GY     + +   +F +M   ++ PN FT   VLK+C  + +L     VH   IK 
Sbjct: 106 SMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKC 165

Query: 142 GLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGV 201
           G  G+ +V  +L+D+Y+    ++ +A  +F +M  +N V+WT++I GY  S +    L  
Sbjct: 166 GFRGNPFVGTTLIDMYSAGG-TVGDAYKIFCEMFERNVVAWTSMINGYILSAD----LVS 220

Query: 202 FKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVM--NSILDMY 259
            + +     E +   ++I V     +G++  G ++ A  + H    N  VM  N++L  Y
Sbjct: 221 ARRLFDLAPERDVVLWNIMV-----SGYIEGGDMVEARKLFHEM-PNRDVMFWNTVLKGY 274

Query: 260 CRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSER-FSPNCFTF 317
                +      F+EM E+++ +WN +I GY  +G   E L  F +M SE    PN  T 
Sbjct: 275 ATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATL 334

Query: 318 TSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD 377
            ++++ACA L AL  G+ VH      GL GN+ + NAL+DMYAKCG I ++  +F  M  
Sbjct: 335 VTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDT 394

Query: 378 RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY 437
           +DL++W +++ G   H  G +A+ LF +M  +G +PD I F+ +L AC+H GLV++G  Y
Sbjct: 395 KDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAY 454

Query: 438 FKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR 496
           F+SM +DY + P  E YGC+VD+L RAGR+++A   ++ MP + D  +W  LLGAC+ ++
Sbjct: 455 FQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYK 514

Query: 497 LPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWI 556
              L +LA  R+++L+P     Y++LSNIY   G+WE+ A+ +  MR  G KK  G S I
Sbjct: 515 NVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLI 574

Query: 557 EVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDI 598
           EV D V  F + D+     + +YGVL  L++ +    Y PD+
Sbjct: 575 EVNDAVVEFYSLDERHPQIEEIYGVLRGLVKVLRSFGYVPDL 616


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 182/445 (40%), Positives = 271/445 (60%), Gaps = 6/445 (1%)

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R VF  M  ++ VSW T+I+G A +G     L + +EM     ++ P SF+++       
Sbjct: 150 RKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREM--GNADLRPDSFTLSSVLPIFA 207

Query: 228 GWVSF--GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
            +V+   GK IH   I++G+ +++ + +S++DMY +   + D+ + F  + + D I+WN+
Sbjct: 208 EYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNS 267

Query: 286 IIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           IIAG  ++G   E L  F +M   +  PN  +F+SI+ ACA L  L  G+Q+H  I+R  
Sbjct: 268 IIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSR 327

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
            DGN+ +A+AL+DMYAKCGNI  ++ IF +M   D+V+WT+M++GY  HGH  +AI LF 
Sbjct: 328 FDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFK 387

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRA 463
            M   GV+P+ + FMAVLTACSHAGLVDE  KYF SM  DY + P  E Y  V DLLGR 
Sbjct: 388 RMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRV 447

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           GR++EAYE I  M  +P  SVW  LL AC+ H+   L +  + ++  + P  +G Y++LS
Sbjct: 448 GRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLS 507

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           NIY+A G+W++  K R  MR  G KK+   SWIE+++KV  F+A DK   +   +   L+
Sbjct: 508 NIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALK 567

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGE 608
           +L+  M    Y  D   ++HD+E E
Sbjct: 568 VLLEQMEREGYVLDTTEVLHDVEEE 592



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 122/446 (27%), Positives = 210/446 (47%), Gaps = 52/446 (11%)

Query: 47  ILATNLIKSYFDEGLIEEA--------------RTLFDEMPERDVVSWTVMIAGYTSFNC 92
           +   N  K  FDEG   +               R +F+ MP+RD+VSW  +I+G      
Sbjct: 117 LYQVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGM 176

Query: 93  HNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENS 152
           H  A  +  EM   ++ P++FTLSSVL       +L     +HG AI+ G +  +++ +S
Sbjct: 177 HEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSS 236

Query: 153 LMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEM 212
           L+D+YA C    D+ R VF  +   + +SW ++I G   +G    GL  F++ML+  ++ 
Sbjct: 237 LIDMYAKCTRVDDSCR-VFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKP 295

Query: 213 NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYF 272
           N  SFS  + ACA    +  GK +H  +I+  F  N+ + ++++DMY +   +  A   F
Sbjct: 296 NHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIF 355

Query: 273 DEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALS 331
           D+M   D+++W  +I GY   G + + +++F +M+ E   PN   F +++ AC+      
Sbjct: 356 DKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACS------ 409

Query: 332 CGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG 391
                HAG+V    D      N++   Y     I    + ++ ++D             G
Sbjct: 410 -----HAGLV----DEAWKYFNSMTQDY----RIIPGLEHYAAVADL-----------LG 445

Query: 392 AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP-NK 450
             G  +EA E   +M    + P   V+  +L AC     ++   K  K +  + V+P N 
Sbjct: 446 RVGRLEEAYEFISDM---HIEPTGSVWSTLLAACRVHKNIELAEKVSKKL--FTVDPQNI 500

Query: 451 EIYGCVVDLLGRAGRVKEAYELIKSM 476
             Y  + ++   AGR K+A +L  +M
Sbjct: 501 GAYVLLSNIYSAAGRWKDARKLRIAM 526



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 6/91 (6%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   +A+ L+  Y   G I  AR +FD+M   D+VSWT MI GY        A ++F  M
Sbjct: 330 GNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRM 389

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALV 134
               V PN     +VL AC      S+A LV
Sbjct: 390 EVEGVKPNYVAFMAVLTAC------SHAGLV 414



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK 361
           P+   F S++ +C  +  L  G+ VH  I+R G+  +L   NAL++MY+K
Sbjct: 8   PDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSK 57


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 199/560 (35%), Positives = 312/560 (55%), Gaps = 37/560 (6%)

Query: 79  SWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNA---FTLSSVLKACKGMKSLSNAALVH 135
           SW   I    S      A ++F++M R  V P +    +L + LK+C G+   + AA +H
Sbjct: 14  SWAYQIRMAASQGQFLHAISLFLQM-RASVAPRSSVPASLPAALKSCAGLGLCTLAASLH 72

Query: 136 GMAIKEGLEGSIYVENSLMDVYATCCISM-----------------------DNARLVFN 172
            +AI+ G     +  N+L+++    CI +                       ++ R VF+
Sbjct: 73  ALAIRSGSFADRFTANALLNL----CIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFD 128

Query: 173 DMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSF 232
           +M  ++ VSW TLI G A        L + +EM  +G   + ++ S  +   A    +  
Sbjct: 129 EMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKR 188

Query: 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEK 292
           G ++H   IK+GF +++ V +S++DMY     +  + + FD  ++ D + WN+++AGY +
Sbjct: 189 GMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQ 248

Query: 293 SGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLAL 351
           +GS  E L +F +M      P   TF+S+I A   L+ L  G+Q+HA ++R   + N+ +
Sbjct: 249 NGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFI 308

Query: 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411
           +++LIDMY KCGN+  ++++F+ +   D+V+WT+M++GY  HG   EA  LF+ M    V
Sbjct: 309 SSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNV 368

Query: 412 RPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470
           +P+ I F+AVLTACSHAGLVD G KYF SM N Y   P+ E    + D LGRAG + EAY
Sbjct: 369 KPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAY 428

Query: 471 ELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEG 530
             I  M  KP  SVW  LL AC+ H+   L +  A ++ +L+P  MG+++ILSN+Y+A G
Sbjct: 429 NFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNMYSASG 488

Query: 531 KWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQY--VYGVLEMLIRH 588
           +W E A+ RK MR  G KKE   SWIEV++K+  FIA+DK  SH  Y  +   L +    
Sbjct: 489 RWNEAAQLRKSMRIKGMKKEPACSWIEVKNKLHVFIAHDK--SHPWYDRIIDALNVYSEQ 546

Query: 589 MNETAYEPDIDCLIHDLEGE 608
           M    Y P+++ ++ D+E E
Sbjct: 547 MIRQGYVPNMEDVLQDIEEE 566



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 174/334 (52%), Gaps = 4/334 (1%)

Query: 63  EEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKAC 122
           E  R +FDEM ERD VSW  +I G      H +A ++  EM R+   P+ FTLS+VL   
Sbjct: 121 ESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIF 180

Query: 123 KGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSW 182
                +    +VHG AIK G +  ++V +SL+D+YA  C  MD +  VF+     + V W
Sbjct: 181 AECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYAN-CTQMDYSMKVFDSFSDCDAVLW 239

Query: 183 TTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIK 242
            +++ GYA +G+    LG+F+ ML  GV   P +FS  + A  +   +  GK +HA +I+
Sbjct: 240 NSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIR 299

Query: 243 HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNM 301
             F  N+ + +S++DMYC+   +  A + F+ +   D+++W  +I GY   G ++E   +
Sbjct: 300 ARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVL 359

Query: 302 FSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-GLDGNLALANALIDMYA 360
           F +M+     PN  TF +++ AC+    +  G +    +  + G   +L    AL D   
Sbjct: 360 FERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLG 419

Query: 361 KCGNISDSQKIFSEMSDRDLVT-WTSMMIGYGAH 393
           + G++ ++    SEM  +   + W++++     H
Sbjct: 420 RAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVH 453



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 119/243 (48%), Gaps = 3/243 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + ++LI  Y +   ++ +  +FD   + D V W  M+AGY       +A  +F  M++ 
Sbjct: 206 FVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQA 265

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V P   T SS++ A   +  L     +H   I+     +I++ +SL+D+Y  C  ++D 
Sbjct: 266 GVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCG-NVDI 324

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR VFN ++  + VSWT +I GYA  G       +F+ M L  V+ N  +F   + AC+ 
Sbjct: 325 ARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSH 384

Query: 227 TGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT-WN 284
            G V  G K  ++   ++GF  +L    ++ D   R   L +A  +  EM  K   + W+
Sbjct: 385 AGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVWS 444

Query: 285 TII 287
           T++
Sbjct: 445 TLL 447


>gi|224112156|ref|XP_002316102.1| predicted protein [Populus trichocarpa]
 gi|222865142|gb|EEF02273.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 183/517 (35%), Positives = 303/517 (58%), Gaps = 7/517 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S + T L+  Y   G IE +R++FDE  +R+V SW+ MIAGY   N       +F  M  
Sbjct: 137 SFVFTGLVDMYAKCGEIECSRSVFDENLDRNVFSWSSMIAGYVQNNLAQDGLVLFNRMRE 196

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             +  N  TL  ++ ACK + +L     +HG  IK G+E   Y+  +L+D+YA C +  D
Sbjct: 197 ELIEANQITLGILVHACKKLGALHQGKWLHGYLIKCGIELGSYLVTALLDLYAKCGVVRD 256

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            AR VF+++   + VSWT +I GY  +G     L +F +     V  N  + +    +C+
Sbjct: 257 -ARSVFDELHGIDIVSWTAMIVGYTQNGCPEEALKLFLQKEQVAVLPNDVTIASVFSSCS 315

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVM-NSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
               ++ G+ IH   IK   GS  P++ NS++D Y +     DA   F+ ++++D++ WN
Sbjct: 316 QLLNLNLGRSIHGLSIK--LGSRDPIVTNSLVDFYAKCQMNRDARYVFETISDRDVVAWN 373

Query: 285 TIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           +II+ + ++GS+ E L +F +M+     P+  T  S+++ACA+L AL  G   HA  V+R
Sbjct: 374 SIISAFSQNGSAYEALELFHQMRMGSVLPDAVTLVSVLSACASLNALQVGSSFHAYAVKR 433

Query: 344 GL-DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
           GL   N+ +  AL+  YAKCG+   ++ IF  M  +  VTW++M+ GYG  G+G+ ++ +
Sbjct: 434 GLLSSNVYVGTALLTFYAKCGDAESARVIFDGMDQKSTVTWSAMISGYGIQGNGRGSLSI 493

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLG 461
           F +M+K+ ++P+  +F ++L+ACSH G++ EG + F  +  DYN+ P+ + Y C+VDLL 
Sbjct: 494 FGDMLKAELKPNEEIFTSILSACSHTGMIGEGWRLFTMICQDYNLVPSTKHYTCMVDLLA 553

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           RAGR+KEA + I+ MP +PD S++G  L  C  H   +LG+LA  R+L+L P     Y++
Sbjct: 554 RAGRLKEALDFIQKMPVQPDVSLFGAFLHGCGLHSRFDLGELAIKRMLELHPGDACYYVL 613

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEV 558
           + N+YA++ +W +  + R++M+  G  K  G S +E+
Sbjct: 614 MCNLYASDARWSKVKQVRELMKQRGLMKTPGCSLMEM 650



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 120/391 (30%), Positives = 202/391 (51%), Gaps = 6/391 (1%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108
           +T L+  Y   G ++ AR +FD +P  D +SW V+I  Y   N   +    F   +R  +
Sbjct: 40  STKLVSLYGSFGRLDLARLVFDTIPHPDFLSWKVIIRWYF-LNSEFRDIVGFYNRMRVCL 98

Query: 109 NP-NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
              +    S VLKAC   ++      VH   +K G   S +V   L+D+YA C   ++ +
Sbjct: 99  KECDNVVFSHVLKACSESRNFDEGRKVHCQIVKFGNPDS-FVFTGLVDMYAKCG-EIECS 156

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R VF++   +N  SW+++I GY  +     GL +F  M  E +E N  +  I V AC   
Sbjct: 157 RSVFDENLDRNVFSWSSMIAGYVQNNLAQDGLVLFNRMREELIEANQITLGILVHACKKL 216

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
           G +  GK +H  +IK G      ++ ++LD+Y +   + DA   FDE+   D+++W  +I
Sbjct: 217 GALHQGKWLHGYLIKCGIELGSYLVTALLDLYAKCGVVRDARSVFDELHGIDIVSWTAMI 276

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            GY ++G   E L +F + +     PN  T  S+ ++C+ L  L+ G+ +H   ++ G  
Sbjct: 277 VGYTQNGCPEEALKLFLQKEQVAVLPNDVTIASVFSSCSQLLNLNLGRSIHGLSIKLG-S 335

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            +  + N+L+D YAKC    D++ +F  +SDRD+V W S++  +  +G   EA+ELF +M
Sbjct: 336 RDPIVTNSLVDFYAKCQMNRDARYVFETISDRDVVAWNSIISAFSQNGSAYEALELFHQM 395

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKY 437
               V PD +  ++VL+AC+    +  G  +
Sbjct: 396 RMGSVLPDAVTLVSVLSACASLNALQVGSSF 426



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 171/330 (51%), Gaps = 18/330 (5%)

Query: 134 VHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSG 193
           +H   + +GL   +     L+ +Y +    +D ARLVF+ +   + +SW  +I  Y  + 
Sbjct: 24  MHAYLVVQGLTRDLSCSTKLVSLYGSFG-RLDLARLVFDTIPHPDFLSWKVIIRWYFLNS 82

Query: 194 NGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMN 253
                +G +  M +   E +   FS  ++AC+ +     G+ +H  ++K G   +  V  
Sbjct: 83  EFRDIVGFYNRMRVCLKECDNVVFSHVLKACSESRNFDEGRKVHCQIVKFGNPDSF-VFT 141

Query: 254 SILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSP 312
            ++DMY +   +  +   FDE  ++++ +W+++IAGY ++  + + L +F++M+ E    
Sbjct: 142 GLVDMYAKCGEIECSRSVFDENLDRNVFSWSSMIAGYVQNNLAQDGLVLFNRMREELIEA 201

Query: 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIF 372
           N  T   ++ AC  L AL  G+ +H  +++ G++    L  AL+D+YAKCG + D++ +F
Sbjct: 202 NQITLGILVHACKKLGALHQGKWLHGYLIKCGIELGSYLVTALLDLYAKCGVVRDARSVF 261

Query: 373 SEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD 432
            E+   D+V+WT+M++GY  +G  +EA++LF +  +  V P+ +   +V ++CS      
Sbjct: 262 DELHGIDIVSWTAMIVGYTQNGCPEEALKLFLQKEQVAVLPNDVTIASVFSSCSQL---- 317

Query: 433 EGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
                       N+N  + I+G  + L  R
Sbjct: 318 -----------LNLNLGRSIHGLSIKLGSR 336



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 67/133 (50%), Gaps = 1/133 (0%)

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
           ++HA +V +GL  +L+ +  L+ +Y   G +  ++ +F  +   D ++W  ++  Y  + 
Sbjct: 23  EMHAYLVVQGLTRDLSCSTKLVSLYGSFGRLDLARLVFDTIPHPDFLSWKVIIRWYFLNS 82

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG 454
             ++ +  ++ M       D +VF  VL ACS +   DEG K    +  +  NP+  ++ 
Sbjct: 83  EFRDIVGFYNRMRVCLKECDNVVFSHVLKACSESRNFDEGRKVHCQIVKFG-NPDSFVFT 141

Query: 455 CVVDLLGRAGRVK 467
            +VD+  + G ++
Sbjct: 142 GLVDMYAKCGEIE 154


>gi|356534169|ref|XP_003535630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Glycine max]
          Length = 595

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 206/586 (35%), Positives = 322/586 (54%), Gaps = 24/586 (4%)

Query: 23  KQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTV 82
           KQ    +  S++ ++  ++ K  + L  ++   ++    +++        P        +
Sbjct: 26  KQIHAHLLTSALVTNDLVVTKAANFLGKHITDVHYPCNFLKQFDWSLSSFP------CNL 79

Query: 83  MIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG 142
           +I+GY S      A  ++   VRN   P+ +T  +VLK+C     +      H +++K G
Sbjct: 80  LISGYASGQLPWLAILIYRWTVRNGFVPDVYTFPAVLKSCAKFSGIGEVRQFHSVSVKTG 139

Query: 143 LEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVF 202
           L   IYV+N+L+ VY+ C  ++   + VF DM  ++ VSWT LI+GY  +G     + +F
Sbjct: 140 LWCDIYVQNTLVHVYSICGDNVGAGK-VFEDMLVRDVVSWTGLISGYVKTGLFNEAISLF 198

Query: 203 KEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRF 262
             M    VE N  +F   + AC   G ++ GK IH  V K  +G  L V N++LDMY + 
Sbjct: 199 LRM---NVEPNVGTFVSILGACGKLGRLNLGKGIHGLVFKCLYGEELVVCNAVLDMYMKC 255

Query: 263 DCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSII 321
           D ++DA + FDEM EKD+I+W ++I G  +  S  E L++FS+M++  F P+    TS++
Sbjct: 256 DSVTDARKMFDEMPEKDIISWTSMIGGLVQCQSPRESLDLFSQMQASGFEPDGVILTSVL 315

Query: 322 AACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLV 381
           +ACA+L  L CG+ VH  I    +  ++ +   L+DMYAKCG I  +Q+IF+ M  +++ 
Sbjct: 316 SACASLGLLDCGRWVHEYIDCHRIKWDVHIGTTLVDMYAKCGCIDMAQRIFNGMPSKNIR 375

Query: 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441
           TW + + G   +G+GKEA++ F+++V+SG RP+ + F+AV TAC H GLVDEG KYF  M
Sbjct: 376 TWNAYIGGLAINGYGKEALKQFEDLVESGTRPNEVTFLAVFTACCHNGLVDEGRKYFNEM 435

Query: 442 ND--YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN 499
               YN++P  E YGC+VDLL RAG V EA ELIK+MP  PD  + G LL +   +   N
Sbjct: 436 TSPLYNLSPCLEHYGCMVDLLCRAGLVGEAVELIKTMPMPPDVQILGALLSS--RNTYGN 493

Query: 500 LGKLAALRVLDLKPNM----MGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSW 555
           +G      +L   PN+     G Y++LSN+YA   KW E    R++M+  G  K  G S 
Sbjct: 494 VG--FTQEMLKSLPNVEFQDSGIYVLLSNLYATNKKWAEVRSVRRLMKQKGISKAPGSSI 551

Query: 556 IEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCL 601
           I V      F+  D     ++ +Y +L +L    N+   E  I+ L
Sbjct: 552 IRVDGMSHEFLVGDNSHPQSEEIYVLLNIL---ANQIYLEGHINTL 594


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 191/563 (33%), Positives = 308/563 (54%), Gaps = 5/563 (0%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T L+ +Y   G + +AR +FD MP R V +W  MI+ Y+      +A+ +F  M      
Sbjct: 49  TALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGER 108

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
            +  T  S+L AC   ++L +   V     +   E  ++V  +L+ +YA C  S +NA  
Sbjct: 109 CDRVTFLSILDACVNPENLQHGKHVRESISETSFELDLFVGTALITMYARC-RSPENAAQ 167

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           VF  MK KN ++W+ +IT +A  G+    L  F+ M  EG+  N  +F   +    +   
Sbjct: 168 VFGRMKQKNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSG 227

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC--LSDANQYFDEMTEKDLITWNTII 287
           +     IH  + +HG      + N+++++Y R +   L  A     EM E+ +  WN +I
Sbjct: 228 LEELSRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLI 287

Query: 288 AGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            GY   G S E L  + +++ E    +  TF S++ AC +  +L+ G+ +H+  V  GLD
Sbjct: 288 NGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLD 347

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            ++ + NAL +MY+KCG++ ++++IF  M  R  V+W  M+  Y  HG  +E ++L  +M
Sbjct: 348 SDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKM 407

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGR 465
            + GV+ + I F++VL++CSHAGL+ EG +YF S+ +D  +    E YGC+VDLLGRAG+
Sbjct: 408 EQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGK 467

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           ++EA + I  MP +P+   W  LLGAC+ H+  + GKLAA ++L+L P      ++LSNI
Sbjct: 468 LQEAEKYISKMPSEPEIVTWASLLGACRVHKDLDRGKLAARKLLELDPGNSSASVVLSNI 527

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           Y+  G W+  AK R+ M     KK  G+S I+V++KV  F   D        +Y  +E L
Sbjct: 528 YSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEEL 587

Query: 586 IRHMNETAYEPDIDCLIHDLEGE 608
              M E  Y PD   ++HD++ E
Sbjct: 588 CFAMREAGYVPDTKMVLHDVDEE 610



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 174/345 (50%), Gaps = 6/345 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + T LI  Y      E A  +F  M ++++++W+ +I  +       +A   F  M +  
Sbjct: 148 VGTALITMYARCRSPENAAQVFGRMKQKNLITWSAIITAFADHGHCGEALRYFRMMQQEG 207

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI-SMDN 166
           + PN  T  S+L        L   + +H +  + GL+ +  + N+L++VY  C    +D 
Sbjct: 208 ILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDV 267

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A ++  +M  +   +W  LI GY   G     L  ++ + LE + ++  +F   + AC S
Sbjct: 268 AEVILQEMDEQQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTS 327

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
           +  ++ GK+IH+  ++ G  S++ V N++ +MY +   + +A + FD M  +  ++WN +
Sbjct: 328 STSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGM 387

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAAC--ATLAALSCGQQVHAGIVRR 343
           +  Y + G S E L +  KM+ E    N  TF S++++C  A L A  C Q  H+    R
Sbjct: 388 LQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGC-QYFHSLGHDR 446

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEM-SDRDLVTWTSMM 387
           G++        L+D+  + G + +++K  S+M S+ ++VTW S++
Sbjct: 447 GIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPSEPEIVTWASLL 491



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 151/296 (51%), Gaps = 8/296 (2%)

Query: 205 MLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264
           MLLEGV+ N  +F   + +      +  GK IH+ V +     ++ V  ++++ Y +   
Sbjct: 1   MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGS 60

Query: 265 LSDANQYFDEMTEKDLITWNTIIAGY---EKSGSSECLNMFSKMKSERFSPNCFTFTSII 321
           L+DA + FD M  + + TWN++I+ Y   E+SG  E   +F +M+ E    +  TF SI+
Sbjct: 61  LTDARKVFDGMPCRSVGTWNSMISAYSISERSG--EAFFIFQRMQHEGERCDRVTFLSIL 118

Query: 322 AACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLV 381
            AC     L  G+ V   I     + +L +  ALI MYA+C +  ++ ++F  M  ++L+
Sbjct: 119 DACVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLI 178

Query: 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441
           TW++++  +  HGH  EA+  F  M + G+ P+R+ F+++L   +    ++E  +    +
Sbjct: 179 TWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLI 238

Query: 442 NDYNVNPNKEIYGCVVDLLGR--AGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            ++ ++    +   +V++ GR   G +  A  +++ M  +   + W  L+     H
Sbjct: 239 TEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMD-EQQITAWNVLINGYTLH 293



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 116/251 (46%), Gaps = 8/251 (3%)

Query: 308 ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISD 367
           E    N  TF +++ +     AL  G+ +H+ +       ++ +  AL++ Y KCG+++D
Sbjct: 4   EGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTD 63

Query: 368 SQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH 427
           ++K+F  M  R + TW SM+  Y       EA  +F  M   G R DR+ F+++L AC +
Sbjct: 64  ARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACVN 123

Query: 428 AGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGP 487
              +  G    +S+++ +   +  +   ++ +  R    + A ++   M  K +   W  
Sbjct: 124 PENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQK-NLITWSA 182

Query: 488 LLGACKEHRLPNLGK-LAALRVLD---LKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMR 543
           ++ A  +H   + G+ L   R++    + PN + T+I L N +      EE ++   ++ 
Sbjct: 183 IITAFADH--GHCGEALRYFRMMQQEGILPNRV-TFISLLNGFTTPSGLEELSRIHLLIT 239

Query: 544 GMGSKKEVGMS 554
             G      MS
Sbjct: 240 EHGLDDTTTMS 250


>gi|147833477|emb|CAN75184.1| hypothetical protein VITISV_001911 [Vitis vinifera]
          Length = 596

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 187/560 (33%), Positives = 307/560 (54%), Gaps = 15/560 (2%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           +  +Y   G +  A   F+ +   ++ SW  ++A ++   C      +F  M++     +
Sbjct: 2   IFGAYIQLGSLHVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVD 61

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
           +F L   +KAC G+     A L H +AIK  LEG  YV  +LM+VY T   S++ A  VF
Sbjct: 62  SFNLVFAVKACFGLSLFQGAKLFHSLAIKLRLEGDPYVAPALMNVY-TELGSLEEAHKVF 120

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
            ++  KN V W  +I GY +    +G   +F  M   G E++P+     ++AC +     
Sbjct: 121 EEVPLKNSVIWGVMIKGYLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGK 180

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            GK  H      G+            +Y     L  A   F+ +  +B++ W+ IIAG+ 
Sbjct: 181 EGKTFHGLYFSSGY------------VYEVRGFLDXALXLFEXIXYRBVVVWSAIIAGFA 228

Query: 292 KSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           ++G + E ++MF +M ++  +PN  TF SI+ AC++L +L  G+ VH  ++R G++ ++ 
Sbjct: 229 RNGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRNGVELDVK 288

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
              + IDMYAKCG I  + ++F ++ ++++ +W++M+ G+G HG   EA+ LF EM    
Sbjct: 289 NYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVN 348

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEA 469
             P+ + F++VL+ACSH+G ++EG  +FKSM+ DY + P +E Y C+VDLLGRAG++ EA
Sbjct: 349 QLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEA 408

Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529
              I +MP +P  S WG LLGAC+ HR   L +  A ++L L+ +  G Y++LSNIYA  
Sbjct: 409 LSFINNMPTEPGASAWGALLGACRIHRRAELAEEVAKKLLPLESDQSGVYVMLSNIYADV 468

Query: 530 GKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHM 589
           G WE   K R  M   G  K VG + IE+++K+  F + D+       +  +   L   M
Sbjct: 469 GMWEMVKKTRLKMCEKGLLKIVGFTSIEIKEKLYLFSSEDRFAYKNTQIESLWNSLKERM 528

Query: 590 NETAYEPDIDCLIHDLEGET 609
            E  Y PD+  ++HD++ E 
Sbjct: 529 RELGYVPDLRFVLHDVDDEV 548



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 170/347 (48%), Gaps = 23/347 (6%)

Query: 31  KSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSF 90
           K  ++ DP + P         L+  Y + G +EEA  +F+E+P ++ V W VMI GY +F
Sbjct: 90  KLRLEGDPYVAPA--------LMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGYLNF 141

Query: 91  NCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVE 150
           +     + +F  M R+    + F +  +++AC  + +       HG+    G        
Sbjct: 142 SEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLYFSSGY------- 194

Query: 151 NSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGV 210
                VY      +D A  +F  + ++B V W+ +I G+A +G     + +F++ML + V
Sbjct: 195 -----VYEVRGF-LDXALXLFEXIXYRBVVVWSAIIAGFARNGRALESISMFRQMLADSV 248

Query: 211 EMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQ 270
             N  +F+  V AC+S G +  G+ +H  +I++G   ++    S +DMY +  C+  A +
Sbjct: 249 TPNSVTFASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYR 308

Query: 271 YFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAA 329
            F ++ EK++ +W+T+I G+   G  +E LN+F +M+S    PN  TF S+++AC+    
Sbjct: 309 VFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGR 368

Query: 330 LSCGQQVHAGIVR-RGLDGNLALANALIDMYAKCGNISDSQKIFSEM 375
           +  G      + R  G+         ++D+  + G I ++    + M
Sbjct: 369 IEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNM 415


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 194/582 (33%), Positives = 313/582 (53%), Gaps = 38/582 (6%)

Query: 65  ARTLFDEMPER--DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKAC 122
           A +LF  +  +  ++  W  +I  ++       +  +F +M+ + + PN+ T  S+ K+C
Sbjct: 78  ALSLFHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSC 137

Query: 123 KGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA-----------------------T 159
              K+   A  +H  A+K  L    +V  SL+ +Y+                       T
Sbjct: 138 AKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFT 197

Query: 160 CCIS-------MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEM 212
             I+       +D+AR +F+++  K+ VSW  +I GY  SG     L  F  M    V  
Sbjct: 198 ALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSP 257

Query: 213 NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYF 272
           N  +    + AC     +  GK I + V   GFG NL ++N+++DMY +   +  A + F
Sbjct: 258 NQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLF 317

Query: 273 DEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALS 331
           D M +KD+I WNT+I GY   S   E L +F  M  E  +PN  TF +++ ACA+L AL 
Sbjct: 318 DGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALD 377

Query: 332 CGQQVHAGIVRR----GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMM 387
            G+ VHA I +     G   N++L  ++I MYAKCG +  ++++F  M  R L +W +M+
Sbjct: 378 LGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMI 437

Query: 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNV 446
            G   +GH + A+ LF+EM+  G +PD I F+ VL+AC+ AG V+ G +YF SMN DY +
Sbjct: 438 SGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGI 497

Query: 447 NPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAAL 506
           +P  + YGC++DLL R+G+  EA  L+ +M  +PD ++WG LL AC+ H     G+  A 
Sbjct: 498 SPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAE 557

Query: 507 RVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFI 566
           R+ +L+P   G Y++LSNIYA  G+W++ AK R  +   G KK  G + IE+   V  F+
Sbjct: 558 RLFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTSIEIDGVVHEFL 617

Query: 567 ANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
             DK    ++ ++ +L+ + R + ET + PD   +++D++ E
Sbjct: 618 VGDKFHPQSENIFRMLDEVDRLLEETGFVPDTSEVLYDMDEE 659



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 113/352 (32%), Positives = 182/352 (51%), Gaps = 8/352 (2%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T LI  Y  EG +++AR LFDE+P +DVVSW  MIAGY       +A   F  M   +V+
Sbjct: 197 TALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVS 256

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           PN  T+ SVL AC  ++SL     +       G   ++ + N+L+D+Y+ C   +  AR 
Sbjct: 257 PNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCG-EIGTARK 315

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           +F+ M+ K+ + W T+I GY H       L +F+ ML E V  N  +F   + ACAS G 
Sbjct: 316 LFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGA 375

Query: 230 VSFGKLIHAAVIKHGFGS----NLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           +  GK +HA + K+  G+    N+ +  SI+ MY +  C+  A Q F  M  + L +WN 
Sbjct: 376 LDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNA 435

Query: 286 IIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR- 343
           +I+G   +G +E  L +F +M +E F P+  TF  +++AC     +  G +  + + +  
Sbjct: 436 MISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDY 495

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHG 394
           G+   L     +ID+ A+ G   +++ +   M  + D   W S++     HG
Sbjct: 496 GISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHG 547



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/403 (28%), Positives = 203/403 (50%), Gaps = 50/403 (12%)

Query: 117 SVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS----MDNARLVFN 172
           ++L  C  + SL     +H + IK GL  +++ ++ L++    C +S    +  A  +F+
Sbjct: 30  NLLAKCPDIPSLKQ---IHSLIIKSGLHNTLFAQSKLIEF---CALSPSRDLSYALSLFH 83

Query: 173 DMKWK--NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
            +  +  N   W TLI  ++ +      L +F +ML  G+  N ++F    ++CA +   
Sbjct: 84  SIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKAT 143

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCR----------FD----------------- 263
              K +HA  +K     +  V  S++ MY +          FD                 
Sbjct: 144 HEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGY 203

Query: 264 ----CLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFT 318
                + DA + FDE+  KD+++WN +IAGY +SG   E L  F++M+    SPN  T  
Sbjct: 204 VSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMV 263

Query: 319 SIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR 378
           S+++AC  L +L  G+ + + +  RG   NL L NAL+DMY+KCG I  ++K+F  M D+
Sbjct: 264 SVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDK 323

Query: 379 DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYF 438
           D++ W +M+ GY      +EA+ LF+ M++  V P+ + F+AVL AC+  G +D G K+ 
Sbjct: 324 DVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLG-KWV 382

Query: 439 KSMNDYNVN-----PNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
            +  D N+       N  ++  ++ +  + G V+ A ++ +SM
Sbjct: 383 HAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSM 425



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 128/271 (47%), Gaps = 15/271 (5%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L   L+  Y   G I  AR LFD M ++DV+ W  MI GY   + + +A  +F  M+R  
Sbjct: 296 LVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLREN 355

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVEN-----SLMDVYATC-C 161
           V PN  T  +VL AC  + +L     VH   I + L+G+  V N     S++ +YA C C
Sbjct: 356 VTPNDVTFLAVLPACASLGALDLGKWVHAY-IDKNLKGTGNVNNVSLWTSIIVMYAKCGC 414

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
           + +  A  VF  M  ++  SW  +I+G A +G+    LG+F+EM+ EG + +  +F   +
Sbjct: 415 VEV--AEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVL 472

Query: 222 RACASTGWVSFGKLIHAAVIK-HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKD 279
            AC   G+V  G    +++ K +G    L     ++D+  R     +A      M  E D
Sbjct: 473 SACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPD 532

Query: 280 LITWNTIIAGYEKSGSSECLNMFSKMKSERF 310
              W +++      G  E    F +  +ER 
Sbjct: 533 GAIWGSLLNACRIHGQVE----FGEYVAERL 559


>gi|297604953|ref|NP_001056393.2| Os05g0574800 [Oryza sativa Japonica Group]
 gi|255676596|dbj|BAF18307.2| Os05g0574800 [Oryza sativa Japonica Group]
          Length = 857

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 198/547 (36%), Positives = 308/547 (56%), Gaps = 4/547 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+  Y   G I  AR +FD M   D +SW  MIAG+   +       +F+ M+ NEV PN
Sbjct: 238 LVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPN 297

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
             T++SV  A   +  +  A  +HG A+K G    +   NSL+ +Y T    M +A  +F
Sbjct: 298 LMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMY-TSLGRMGDAGKIF 356

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           + M+ K+ +SWT +I+GY  +G     L V+  M L  V  +  + + A+ ACA  G + 
Sbjct: 357 SRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLD 416

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY- 290
            G  +H      GF   + V N++L+MY +   +  A + F  M EKD+++W+++IAG+ 
Sbjct: 417 VGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFC 476

Query: 291 EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
               S E L  F  M      PN  TF + ++ACA   AL  G+++HA ++R G+     
Sbjct: 477 FNHRSFEALYYFRYMLGH-VKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGY 535

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           + NAL+D+Y KCG  S +   FS  S++D+V+W  M+ G+ AHG G  A+ LF++MV+ G
Sbjct: 536 VPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMG 595

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEA 469
             PD + F+A+L ACS AG+V +G + F  M + +++ PN + Y C+VDLL R G++ EA
Sbjct: 596 EHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEA 655

Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529
           Y LI  MP KPD +VWG LL  C+ HR   LG+LAA  +L+L+PN +  +++L ++Y   
Sbjct: 656 YNLINRMPIKPDAAVWGALLNGCRIHRHVELGELAAKVILELEPNDVAYHVLLCDLYTDA 715

Query: 530 GKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHM 589
           GKW + A+ RK MR  G +++ G SW+EV+     F+ +D+     + +  VL  +   M
Sbjct: 716 GKWAQVARVRKTMREKGLEQDNGCSWVEVKGVTHAFLTDDESHPQIKEINVVLHGIYERM 775

Query: 590 NETAYEP 596
               + P
Sbjct: 776 KACGFAP 782



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 129/443 (29%), Positives = 221/443 (49%), Gaps = 4/443 (0%)

Query: 60  GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119
           G I  A  +F +MPERDV SW VM+ GY       +A  ++  M+   + P+ +T   VL
Sbjct: 145 GEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVL 204

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179
           + C G+        VH   ++ G    + V N+L+ +YA C   +  AR VF+ M   + 
Sbjct: 205 RTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCG-DIVAARKVFDGMAVTDC 263

Query: 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAA 239
           +SW  +I G+  +     GL +F  ML   V+ N  + +    A      V F K +H  
Sbjct: 264 ISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGF 323

Query: 240 VIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSEC 298
            +K GF  ++   NS++ MY     + DA + F  M  KD ++W  +I+GYEK+G   + 
Sbjct: 324 AVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKA 383

Query: 299 LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDM 358
           L +++ M+    SP+  T  S +AACA L  L  G ++H     +G    + +ANAL++M
Sbjct: 384 LEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEM 443

Query: 359 YAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVF 418
           YAK  +I  + ++F  M+++D+V+W+SM+ G+  +    EA+  F  M+   V+P+ + F
Sbjct: 444 YAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYMLGH-VKPNSVTF 502

Query: 419 MAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPF 478
           +A L+AC+  G +  G +    +    +     +   ++DL  + G+   A+    S+  
Sbjct: 503 IAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQF-SVHS 561

Query: 479 KPDESVWGPLLGACKEHRLPNLG 501
           + D   W  +L     H L ++ 
Sbjct: 562 EKDVVSWNIMLSGFVAHGLGDIA 584



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 184/369 (49%), Gaps = 8/369 (2%)

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +A  VF  M  ++  SW  ++ GY   G     L ++  ML  G+  + Y+F   +R C 
Sbjct: 149 HAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCG 208

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
                  G+ +HA V++ GFG  + V+N+++ MY +   +  A + FD M   D I+WN 
Sbjct: 209 GIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNA 268

Query: 286 IIAGYEKSGSSEC-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +IAG+ ++   E  L +F  M      PN  T TS+  A   L+ +   +++H   V+RG
Sbjct: 269 MIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRG 328

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
              ++A  N+LI MY   G + D+ KIFS M  +D ++WT+M+ GY  +G   +A+E++ 
Sbjct: 329 FAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYA 388

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
            M    V PD +   + L AC+  G +D G+K  +   +        +   ++++  ++ 
Sbjct: 389 LMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSK 448

Query: 465 RVKEAYELIKSMPFKPDESVWGPLL-GACKEHRLPNLGKLAALRVL--DLKPNMMGTYII 521
            + +A E+ K M  K D   W  ++ G C  HR  +   L   R +   +KPN + T+I 
Sbjct: 449 HIDKAIEVFKFMAEK-DVVSWSSMIAGFCFNHR--SFEALYYFRYMLGHVKPNSV-TFIA 504

Query: 522 LSNIYAAEG 530
             +  AA G
Sbjct: 505 ALSACAATG 513



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 102/348 (29%), Positives = 185/348 (53%), Gaps = 5/348 (1%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
           +LI+ Y   G + +A  +F  M  +D +SWT MI+GY      ++A  V+  M  + V+P
Sbjct: 338 SLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSP 397

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           +  T++S L AC  +  L     +H +A  +G    + V N+L+++YA     +D A  V
Sbjct: 398 DDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAK-SKHIDKAIEV 456

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F  M  K+ VSW+++I G+  +   +  L  F+ ML   V+ N  +F  A+ ACA+TG +
Sbjct: 457 FKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYMLGH-VKPNSVTFIAALSACAATGAL 515

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
             GK IHA V++ G GS   V N++LD+Y +    S A   F   +EKD+++WN +++G+
Sbjct: 516 RSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGF 575

Query: 291 EKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQV-HAGIVRRGLDGN 348
              G  +  L++F++M      P+  TF +++ AC+    +  G ++ H    +  +  N
Sbjct: 576 VAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPN 635

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHGH 395
           L     ++D+ ++ G ++++  + + M  + D   W +++ G   H H
Sbjct: 636 LKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRH 683



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 134/252 (53%), Gaps = 10/252 (3%)

Query: 253 NSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFS 311
           N++L M  RF  +  A + F +M E+D+ +WN ++ GY K G   E L+++ +M      
Sbjct: 135 NAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMR 194

Query: 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKI 371
           P+ +TF  ++  C  +     G++VHA ++R G    + + NAL+ MYAKCG+I  ++K+
Sbjct: 195 PDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKV 254

Query: 372 FSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLV 431
           F  M+  D ++W +M+ G+  +   +  +ELF  M+++ V+P+ +   +V  A   +G++
Sbjct: 255 FDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVA---SGML 311

Query: 432 DEGLKYFKSMNDYNVNPNKEI----YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGP 487
            E + + K M+ + V     I       ++ +    GR+ +A ++   M  K D   W  
Sbjct: 312 SE-VGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETK-DAMSWTA 369

Query: 488 LLGACKEHRLPN 499
           ++   +++  P+
Sbjct: 370 MISGYEKNGFPD 381



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 115/245 (46%), Gaps = 4/245 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++A  L++ Y     I++A  +F  M E+DVVSW+ MIAG+  FN  +     +   +  
Sbjct: 435 VVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFC-FNHRSFEALYYFRYMLG 493

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V PN+ T  + L AC    +L +   +H   ++ G+    YV N+L+D+Y  C      
Sbjct: 494 HVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCG-QTSY 552

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A   F+    K+ VSW  +++G+   G G   L +F +M+  G   +  +F   + AC+ 
Sbjct: 553 AWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSR 612

Query: 227 TGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLITWN 284
            G V  G +L H    K     NL     ++D+  R   L++A    + M  K D   W 
Sbjct: 613 AGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWG 672

Query: 285 TIIAG 289
            ++ G
Sbjct: 673 ALLNG 677



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 108/247 (43%), Gaps = 8/247 (3%)

Query: 305 MKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGN 364
           ++S    P+   + ++   C    A+  G +  A          L L NA++ M  + G 
Sbjct: 87  LESSPEPPDEGAYVALFRLCEWRRAVDAGMRACARADAEHPSFGLRLGNAMLSMLVRFGE 146

Query: 365 ISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTA 424
           I  + ++F++M +RD+ +W  M+ GYG  G  +EA++L+  M+ +G+RPD   F  VL  
Sbjct: 147 IWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRT 206

Query: 425 CSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESV 484
           C        G +    +  +      ++   +V +  + G +  A ++   M    D   
Sbjct: 207 CGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVT-DCIS 265

Query: 485 WGPLLGACKEHRLPNLGKLAALRVL--DLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIM 542
           W  ++    E+     G    L +L  +++PN+M     ++++  A G   E   F K M
Sbjct: 266 WNAMIAGHFENHECEAGLELFLTMLENEVQPNLM----TITSVTVASGMLSEVG-FAKEM 320

Query: 543 RGMGSKK 549
            G   K+
Sbjct: 321 HGFAVKR 327


>gi|225456755|ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
           chloroplastic [Vitis vinifera]
 gi|297733984|emb|CBI15231.3| unnamed protein product [Vitis vinifera]
          Length = 893

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 183/512 (35%), Positives = 305/512 (59%), Gaps = 7/512 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPE-RDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
           S +++ LI  Y   G+++ +  +F EM   +++  W VMI+ +       +A  +F  M+
Sbjct: 384 SNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQSGSTGRAVELFQRML 443

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
           +  + P+ F  SSVL     + SLS   L+H   +K GL   I V +SL  +Y+ C  S+
Sbjct: 444 QEGLRPDKFCSSSVLSI---IDSLSLGRLIHCYILKIGLFTDISVGSSLFTMYSKCG-SL 499

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           + +  VF  M  K++VSW ++ITG++   +    + +F+EMLLE +  +  + + A+ AC
Sbjct: 500 EESYTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQMTLTAALTAC 559

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           ++   +  GK +H   ++   G  + V  ++++MY +   +  A + FD + +KD  + +
Sbjct: 560 SALHSLEKGKEVHGYALRARVGKEVLVGGALVNMYSKCGAIVLARRVFDMLPQKDQFSCS 619

Query: 285 TIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           ++++GY ++G  E  L +F +++      + FT +S+I A A L +L  G Q+HA + + 
Sbjct: 620 SLVSGYAQNGYIEDALLLFHEIRMADLWIDSFTVSSVIGAVAILNSLDIGTQLHACVTKM 679

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           GL+  +++ ++L+ MY+KCG+I +  K+F ++   DL++WT+M++ Y  HG G EA++++
Sbjct: 680 GLNAEVSVGSSLVTMYSKCGSIDECHKVFEQIEKPDLISWTAMIVSYAQHGKGAEALKVY 739

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGR 462
           D M K G +PD + F+ VL+ACSH G+V+EG  +  SM  +Y + P    Y C+VDLLGR
Sbjct: 740 DLMRKEGTKPDSVTFVGVLSACSHNGMVEEGYSHLNSMAKEYGIEPGYYHYACMVDLLGR 799

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           +GR+KEA   I +MP +PD  +WG LL ACK H    LG+LAA RV++L+P   G Y+ L
Sbjct: 800 SGRLKEAERFINNMPIEPDALLWGILLAACKVHGDIELGRLAAKRVIELEPCEAGAYVTL 859

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMS 554
           SNI A  G WE+  K R +M G G KKE G S
Sbjct: 860 SNICADMGWWEDVMKIRSLMEGTGVKKEPGWS 891



 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 129/460 (28%), Positives = 233/460 (50%), Gaps = 13/460 (2%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           I +  + +  +L+  Y     +  A  LFD+ P  +V+SW ++I+G         +W  F
Sbjct: 76  ILQSNTFMTNSLMGWYCKSNSMVHALRLFDKTPHPNVISWNILISGCNQNFSFEDSWRNF 135

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
            +M  +  +PN FT  SVL AC  + S     LV+ +A+K G   + YV   ++D++A  
Sbjct: 136 CKMRFSGFDPNQFTYGSVLSACTALGSPLYGELVYSLALKNGFFSNGYVRAGMIDLFAKL 195

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
           C S ++A  VF D+  +N V W  +I+G   +   +  L +F +M       N ++FS  
Sbjct: 196 C-SFEDALRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMCCRFFMPNSFTFSSI 254

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           + ACA+   + FG+ +   VIK G G ++ V  +I+D+Y +   +  A + F  M  +++
Sbjct: 255 LTACAALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEFLRMPIRNV 314

Query: 281 ITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           ++W TII+G+ +K  S    + F +M+      N +T TS++ AC     +    Q+H+ 
Sbjct: 315 VSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSW 374

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEM-SDRDLVTWTSMMIGYGAHGHGKE 398
           I + G   +  +++ALI+MY+K G +  S+++F EM S ++L  W  M+  +   G    
Sbjct: 375 IFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQSGSTGR 434

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLT---ACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455
           A+ELF  M++ G+RPD+    +VL+   + S   L+   +       D +V  +      
Sbjct: 435 AVELFQRMLQEGLRPDKFCSSSVLSIIDSLSLGRLIHCYILKIGLFTDISVGSS------ 488

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           +  +  + G ++E+Y + + MP K D   W  ++    EH
Sbjct: 489 LFTMYSKCGSLEESYTVFEQMPDK-DNVSWASMITGFSEH 527



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 189/370 (51%), Gaps = 3/370 (0%)

Query: 124 GMKSLSNAALVHGMAIKEG-LEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSW 182
           G  +L N  ++H   +K   L+ + ++ NSLM  Y     SM +A  +F+     N +SW
Sbjct: 57  GRCTLRNTKILHAHFLKTAILQSNTFMTNSLMGWYCKSN-SMVHALRLFDKTPHPNVISW 115

Query: 183 TTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIK 242
             LI+G   + +       F +M   G + N +++   + AC + G   +G+L+++  +K
Sbjct: 116 NILISGCNQNFSFEDSWRNFCKMRFSGFDPNQFTYGSVLSACTALGSPLYGELVYSLALK 175

Query: 243 HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNM 301
           +GF SN  V   ++D++ +     DA + F ++  ++++ WN II+G  K+  +   L++
Sbjct: 176 NGFFSNGYVRAGMIDLFAKLCSFEDALRVFQDVLCENVVCWNAIISGAVKNRENWVALDL 235

Query: 302 FSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK 361
           F +M    F PN FTF+SI+ ACA L  L  G+ V   +++ G   ++ +  A+ID+YAK
Sbjct: 236 FCQMCCRFFMPNSFTFSSILTACAALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAK 295

Query: 362 CGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAV 421
           C ++  + K F  M  R++V+WT+++ G+        A   F EM K G + +     +V
Sbjct: 296 CRDMDQAVKEFLRMPIRNVVSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSV 355

Query: 422 LTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481
           LTAC+   ++ E ++    +       +  +   ++++  + G V  +  + + M    +
Sbjct: 356 LTACTEPVMIKEAVQLHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKN 415

Query: 482 ESVWGPLLGA 491
            ++W  ++ A
Sbjct: 416 LAMWAVMISA 425



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 112/260 (43%), Gaps = 34/260 (13%)

Query: 40  LIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTV 99
           ++P+      ++L+  Y   G IE+A  LF E+   D+  W                   
Sbjct: 609 MLPQKDQFSCSSLVSGYAQNGYIEDALLLFHEIRMADL--WI------------------ 648

Query: 100 FVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
                      ++FT+SSV+ A   + SL     +H    K GL   + V +SL+ +Y+ 
Sbjct: 649 -----------DSFTVSSVIGAVAILNSLDIGTQLHACVTKMGLNAEVSVGSSLVTMYSK 697

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
           C  S+D    VF  ++  + +SWT +I  YA  G G   L V+  M  EG + +  +F  
Sbjct: 698 CG-SIDECHKVFEQIEKPDLISWTAMIVSYAQHGKGAEALKVYDLMRKEGTKPDSVTFVG 756

Query: 220 AVRACASTGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TE 277
            + AC+  G V  G   +++   ++G          ++D+  R   L +A ++ + M  E
Sbjct: 757 VLSACSHNGMVEEGYSHLNSMAKEYGIEPGYYHYACMVDLLGRSGRLKEAERFINNMPIE 816

Query: 278 KDLITWNTIIAGYEKSGSSE 297
            D + W  ++A  +  G  E
Sbjct: 817 PDALLWGILLAACKVHGDIE 836


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 194/584 (33%), Positives = 318/584 (54%), Gaps = 38/584 (6%)

Query: 60  GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119
           G +E AR +FD MP  +   W  MI GY+   C N A +++ EM+   V P+ +T   +L
Sbjct: 67  GDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLL 126

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179
           K      ++     +H   +K G   +++V+N+L+ +Y+     +  AR VF+     + 
Sbjct: 127 KRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSG-EVSVARGVFDRSSKGDV 185

Query: 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA--VRACASTGWVSFGKLIH 237
           V+W  +I+GY  S      + +F EM  E + + P S ++   + AC+    ++ GK +H
Sbjct: 186 VTWNVMISGYNRSKQFDESMKLFDEM--ERMRVLPSSITLVSVLSACSKLKDLNVGKRVH 243

Query: 238 AAVIKHGFGSNLPVMNSILDMYCR----------FDCLSD-------------------- 267
             V          + N+++DMY            FD +                      
Sbjct: 244 RYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVG 303

Query: 268 -ANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACA 325
            A  YFD+M E+D ++W  +I GY +     E L++F +M++    P+ FT  SI+ ACA
Sbjct: 304 LARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACA 363

Query: 326 TLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTS 385
            L AL  G+ + A I +  +  +  + NALIDMY  CGN+  + +IF+ M  RD ++WT+
Sbjct: 364 HLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTA 423

Query: 386 MMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DY 444
           ++ G   +G+G+EA+++F +M+K+ + PD +  + VL AC+H+G+VD+G K+F  M   +
Sbjct: 424 VIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQH 483

Query: 445 NVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLA 504
            + PN   YGC+VDLLGRAG +KEA+E+IK+MP KP+  VWG LLGAC+ HR   + ++A
Sbjct: 484 GIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMA 543

Query: 505 ALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCG 564
           A ++L+L+P     Y++L NIYAA  +WE+  + RK+M   G KK  G S IE+   V  
Sbjct: 544 AQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHE 603

Query: 565 FIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           F+A D++   ++ +Y  L+ +   +    Y PD   +  D+  E
Sbjct: 604 FVAGDQVHPQSKEIYSKLDEMSVDLKFAGYSPDTSEVFLDIGEE 647



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 117/410 (28%), Positives = 203/410 (49%), Gaps = 45/410 (10%)

Query: 117 SVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI----SMDNARLVFN 172
           S++K CK M  L     +H   I  GL  +  V   ++   A CC      M+ AR+VF+
Sbjct: 24  SLIKTCKSMAQLKQ---IHSQTICTGLISNPIVPAQII---AFCCKHELGDMEYARMVFD 77

Query: 173 DMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSF 232
            M   N   W  +I GY+  G     + ++ EML  GV  + Y++   ++       V  
Sbjct: 78  TMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKC 137

Query: 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEK 292
           G+ +H  ++K GF SN+ V N+++ +Y     +S A   FD  ++ D++TWN +I+GY +
Sbjct: 138 GRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNR 197

Query: 293 SGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLAL 351
           S    E + +F +M+  R  P+  T  S+++AC+ L  L+ G++VH  +    ++    L
Sbjct: 198 SKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVL 257

Query: 352 ANALIDMYAKCGNISDSQKI-------------------------------FSEMSDRDL 380
            NALIDMYA CG++  +  I                               F +M +RD 
Sbjct: 258 ENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDF 317

Query: 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS 440
           V+WT+M+ GY      KE + LF EM  + ++PD    +++LTAC+H G ++ G ++ K+
Sbjct: 318 VSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELG-EWIKA 376

Query: 441 MNDYN-VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
             D N +  +  +   ++D+    G V++A  +  +MP + D+  W  ++
Sbjct: 377 YIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHR-DKISWTAVI 425



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 188/372 (50%), Gaps = 39/372 (10%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y   G +  AR +FD   + DVV+W VMI+GY      +++  +F EM R  V P+
Sbjct: 160 LIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPS 219

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
           + TL SVL AC  +K L+    VH       +E    +EN+L+D+YA C   MD A  +F
Sbjct: 220 SITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACG-DMDTALGIF 278

Query: 172 NDMKWKNDVSWTTLITGYAHSG------------------------NGYGGLGVFKEML- 206
           ++MK ++ +SWT ++TG+ + G                        +GY  +  FKE+L 
Sbjct: 279 DNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLS 338

Query: 207 ----LEGVEMNPYSFSIA--VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYC 260
               ++   + P  F++   + ACA  G +  G+ I A + K+    +  V N+++DMY 
Sbjct: 339 LFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMY- 397

Query: 261 RFDC--LSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTF 317
            F+C  +  A + F+ M  +D I+W  +I G   +G   E L+MFS+M     +P+  T 
Sbjct: 398 -FNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTC 456

Query: 318 TSIIAACATLAALSCGQQVHAGI-VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
             ++ AC     +  G++  A +  + G++ N+A    ++D+  + G++ ++ ++   M 
Sbjct: 457 IGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMP 516

Query: 377 DR-DLVTWTSMM 387
            + + + W S++
Sbjct: 517 VKPNSIVWGSLL 528



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 143/301 (47%), Gaps = 9/301 (2%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T ++  + + G +  AR  FD+MPERD VSWT MI GY   N   +  ++F EM    + 
Sbjct: 290 TAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIK 349

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P+ FT+ S+L AC  + +L     +     K  ++   +V N+L+D+Y  C  +++ A  
Sbjct: 350 PDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCG-NVEKAIR 408

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           +FN M  ++ +SWT +I G A +G G   L +F +ML   +  +  +    + AC  +G 
Sbjct: 409 IFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGM 468

Query: 230 VSFGKLIHAAV-IKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLITWNTII 287
           V  GK   A +  +HG   N+     ++D+  R   L +A++    M  K + I W +++
Sbjct: 469 VDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLL 528

Query: 288 AGYEKSGSSECLNMFSKMKSERFSPNCFTFT---SIIAACATLAALSCGQQVHAGIVRRG 344
                    E   M ++   E    N   +    +I AAC     L    +V   ++ RG
Sbjct: 529 GACRVHRDEEMAEMAAQQILELEPENGAVYVLLCNIYAACNRWEKL---HEVRKLMMDRG 585

Query: 345 L 345
           +
Sbjct: 586 I 586



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 15/149 (10%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S +   LI  YF+ G +E+A  +F+ MP RD +SWT +I G        +A  +F +M++
Sbjct: 387 SFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLK 446

Query: 106 NEVNPNAFTLSSVLKAC-------KGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA 158
             + P+  T   VL AC       KG K  +       M  + G+E ++     ++D+  
Sbjct: 447 ASITPDEVTCIGVLCACTHSGMVDKGKKFFAR------MTTQHGIEPNVAHYGCMVDLLG 500

Query: 159 TCCISMDNARLVFNDMKWK-NDVSWTTLI 186
                +  A  V  +M  K N + W +L+
Sbjct: 501 RAG-HLKEAHEVIKNMPVKPNSIVWGSLL 528


>gi|125571373|gb|EAZ12888.1| hypothetical protein OsJ_02809 [Oryza sativa Japonica Group]
          Length = 669

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 180/512 (35%), Positives = 296/512 (57%), Gaps = 5/512 (0%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           + L+  Y     +EEA  +F+EM ERDVVSWT MI+        ++   +  EM    + 
Sbjct: 160 SGLVNYYGAFRSVEEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGII 219

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNAR 168
           PN  T+ S+L AC   +++     V+    K G+E  + + N+L+ +Y  C C+S  +A 
Sbjct: 220 PNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLS--DAL 277

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
             F  M  +   SW TLI G+  +      L +F+EMLL GV  +  +    + ACA  G
Sbjct: 278 EAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLG 337

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            +  G  +H+ +  +G   +  + NS+++MY +   ++ A + F  MT+KD+++W  ++ 
Sbjct: 338 ELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVC 397

Query: 289 GYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           GY K    +   N+F +MK      +     S+++AC+ L AL  G+++H+ I    +  
Sbjct: 398 GYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAK 457

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           +L L +AL+DMYAKCG I  + +IF +M  +  ++W +M+ G  ++G+GKEA+ELFD+M+
Sbjct: 458 DLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQML 517

Query: 408 K-SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
           +    +PD I   AVL AC+H G+VDEGL+YF  M+   V P+ E YGC+VDLLGRAG +
Sbjct: 518 ELQDPKPDGITLKAVLGACAHVGMVDEGLRYFYLMSSLGVVPDTEHYGCIVDLLGRAGML 577

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            EA+  IK MP +P+  +WG LL AC+ H   +LGK+    ++++ PN +G ++++SN++
Sbjct: 578 DEAFHFIKKMPIEPNPVIWGSLLAACRVHHRMDLGKVIGQHIVNVAPNDVGVHVLVSNLH 637

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEV 558
           A E +W++    R +M   G +K  G S ++V
Sbjct: 638 AEESQWDDVEHVRGLMGSRGIEKTPGHSSVQV 669



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 133/430 (30%), Positives = 226/430 (52%), Gaps = 6/430 (1%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTL---SSVLKA 121
           AR +FD M + +   W  MI GY+S      A  VF EM R  V+P+ +T+    S   A
Sbjct: 71  ARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAA 130

Query: 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS 181
             G+K  SN   +H +  + G    ++V + L++ Y     S++ A  VF +M  ++ VS
Sbjct: 131 FAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGA-FRSVEEASKVFEEMYERDVVS 189

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           WT++I+  A  G+    L +  EM  EG+  N  +    + AC  T  V  G+ ++  V 
Sbjct: 190 WTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVG 249

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLN 300
           K G  +++ + N+++ MY +  CLSDA + F  M  +   +WNT+I G+ +     E L 
Sbjct: 250 KFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALR 309

Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360
           +F +M     +P+  T  S+++ACA L  L  G  VH+ I   G+  +  L N+LI+MYA
Sbjct: 310 IFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYA 369

Query: 361 KCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420
           KCG+++ ++++F  M+ +D+V+WT M+ GY        A  LF+EM  + V    +  ++
Sbjct: 370 KCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVS 429

Query: 421 VLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKP 480
           +L+ACS  G +D+G +    + + NV  +  +   +VD+  + G +  A E+ + M  K 
Sbjct: 430 LLSACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQ 489

Query: 481 DESVWGPLLG 490
             S W  ++G
Sbjct: 490 TLS-WNAMIG 498



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 116/399 (29%), Positives = 209/399 (52%), Gaps = 11/399 (2%)

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           ++  P    L + L AC    S ++ A +HG  ++  L    +V   L+ + A+     D
Sbjct: 11  SQARPIRHHLLAYLDACA---SRAHLAELHGRLVRAHLTSDSFVAGRLIALLASPAARHD 67

Query: 166 --NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
              AR VF+ M   N   W  +I GY+        L VF+EM   GV  + Y+ +  V A
Sbjct: 68  MRYARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSA 127

Query: 224 CASTG---WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
            A+     W S G  IHA V + GF S++ VM+ +++ Y  F  + +A++ F+EM E+D+
Sbjct: 128 SAAFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVEEASKVFEEMYERDV 187

Query: 281 ITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           ++W ++I+   + G   + L M S+M++E   PN  T  S+++AC    A+  G+ V+  
Sbjct: 188 VSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQ 247

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
           + + G++ ++ + NALI MY KCG +SD+ + F  M  R   +W +++ G+  +   KEA
Sbjct: 248 VGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEA 307

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL 459
           + +F+EM+  GV PD I  ++VL+AC+  G + +G+     + D  +  +  +   ++++
Sbjct: 308 LRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINM 367

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLL-GACKEHRL 497
             + G +  A  + ++M  K D   W  ++ G  K H+ 
Sbjct: 368 YAKCGDMAAAERVFQTMT-KKDVVSWTVMVCGYVKGHQF 405



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 120/247 (48%), Gaps = 5/247 (2%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           +IL  +LI  Y   G +  A  +F  M ++DVVSWTVM+ GY   +    A+ +F EM  
Sbjct: 358 NILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKI 417

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISM 164
            EV  +   L S+L AC  + +L     +H    +  +   + +E++L+D+YA C CI  
Sbjct: 418 AEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCI-- 475

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEML-LEGVEMNPYSFSIAVRA 223
           D A  +F  M+ K  +SW  +I G A +G G   + +F +ML L+  + +  +    + A
Sbjct: 476 DTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGA 535

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLIT 282
           CA  G V  G      +   G   +      I+D+  R   L +A  +  +M  E + + 
Sbjct: 536 CAHVGMVDEGLRYFYLMSSLGVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIEPNPVI 595

Query: 283 WNTIIAG 289
           W +++A 
Sbjct: 596 WGSLLAA 602


>gi|297843162|ref|XP_002889462.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335304|gb|EFH65721.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 608

 Score =  348 bits (892), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 198/557 (35%), Positives = 320/557 (57%), Gaps = 21/557 (3%)

Query: 9   YAATFH-CHKIPPIIK--QSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGL-IEE 64
           YA+    C K+   I   Q    V KS +++D  +          +L+  YF  G  + E
Sbjct: 63  YASLLQTCRKVFSFIHGLQFHAHVVKSGLETDRNV--------GNSLLSLYFKLGPDMRE 114

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
            R +FD M  +D +SWT M++GY +   H +A  VFVEMV   + PN FTLSS +KAC  
Sbjct: 115 TRRVFDGMFVKDAISWTSMMSGYVASKEHVKALEVFVEMVSFGLQPNKFTLSSAVKACFE 174

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTT 184
           +  +      HG+ I  G E +  + ++L  +Y      +D AR VF++M   + + WT 
Sbjct: 175 LGEVRLGRCFHGVVITHGFEWNHVISSTLAYMYGVNKEPVD-ARRVFDEMPEPDVICWTA 233

Query: 185 LITGYAHSGNGYGGLGVFKEMLL-EGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH 243
           +++ ++ +      LG+F  M   +G+  +  +F   + AC +   +  GK IH  +I +
Sbjct: 234 VLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITN 293

Query: 244 GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMF 302
           G GSN+ V +S+LDMY +   + +A Q F+ M  K++++W+ ++ GY ++G  E  + MF
Sbjct: 294 GIGSNVVVESSLLDMYGKSGSVREARQVFNGMPRKNIVSWSALLGGYCQNGEHEKAIEMF 353

Query: 303 SKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362
            +M+ +    + + F +++ ACA LAA+  G+++H   VRRG  GN+ + +ALID+Y K 
Sbjct: 354 REMEEK----DLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALIDLYGKS 409

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
           G I  + +++S+MS R+++TW +M+     +G G+EA+  F++MVK G++PD I F+AVL
Sbjct: 410 GCIDYASRVYSKMSVRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYISFIAVL 469

Query: 423 TACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481
           TAC H GLV+EG  YF  M   Y + P  E Y C++DLLGRAG  +EA  L+     + D
Sbjct: 470 TACGHTGLVEEGRNYFALMAKSYGIKPGTEHYSCMIDLLGRAGLFEEAENLLDRAECRND 529

Query: 482 ESVWGPLLGACKEHR-LPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRK 540
            S+WG LLG C  +    ++ +  A R+++L+P    +Y++LSN+Y A G+  +  K RK
Sbjct: 530 ASLWGVLLGPCAANTDASSIAERIAKRMMELEPKYHMSYVLLSNMYKAIGRHGDALKIRK 589

Query: 541 IMRGMGSKKEVGMSWIE 557
           +M   G  K VG SWI+
Sbjct: 590 LMVRRGVAKTVGQSWID 606



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 114/392 (29%), Positives = 205/392 (52%), Gaps = 7/392 (1%)

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           +E++  +   +S+L+ C+ + S  +    H   +K GLE    V NSL+ +Y      M 
Sbjct: 54  SEISAKSNLYASLLQTCRKVFSFIHGLQFHAHVVKSGLETDRNVGNSLLSLYFKLGPDMR 113

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
             R VF+ M  K+ +SWT++++GY  S      L VF EM+  G++ N ++ S AV+AC 
Sbjct: 114 ETRRVFDGMFVKDAISWTSMMSGYVASKEHVKALEVFVEMVSFGLQPNKFTLSSAVKACF 173

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
             G V  G+  H  VI HGF  N  + +++  MY       DA + FDEM E D+I W  
Sbjct: 174 ELGEVRLGRCFHGVVITHGFEWNHVISSTLAYMYGVNKEPVDARRVFDEMPEPDVICWTA 233

Query: 286 IIAGYEKSG-SSECLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           +++ + K+    E L +F  M + +   P+  TF +++ AC  L  L  G+++H  ++  
Sbjct: 234 VLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITN 293

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G+  N+ + ++L+DMY K G++ +++++F+ M  +++V+W++++ GY  +G  ++AIE+F
Sbjct: 294 GIGSNVVVESSLLDMYGKSGSVREARQVFNGMPRKNIVSWSALLGGYCQNGEHEKAIEMF 353

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
            EM +     D   F  VL AC+    V  G +            N  +   ++DL G++
Sbjct: 354 REMEE----KDLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALIDLYGKS 409

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           G +  A  +   M  + +   W  +L A  ++
Sbjct: 410 GCIDYASRVYSKMSVR-NMITWNAMLSALAQN 440



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 100/203 (49%), Gaps = 2/203 (0%)

Query: 296 SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
           ++ + + +   S   S     + S++  C  + +   G Q HA +V+ GL+ +  + N+L
Sbjct: 42  TDAIRILNSTHSSEISAKSNLYASLLQTCRKVFSFIHGLQFHAHVVKSGLETDRNVGNSL 101

Query: 356 IDMYAKCG-NISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
           + +Y K G ++ +++++F  M  +D ++WTSMM GY A     +A+E+F EMV  G++P+
Sbjct: 102 LSLYFKLGPDMRETRRVFDGMFVKDAISWTSMMSGYVASKEHVKALEVFVEMVSFGLQPN 161

Query: 415 RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
           +    + + AC   G V  G  +   +  +    N  I   +  + G      +A  +  
Sbjct: 162 KFTLSSAVKACFELGEVRLGRCFHGVVITHGFEWNHVISSTLAYMYGVNKEPVDARRVFD 221

Query: 475 SMPFKPDESVWGPLLGACKEHRL 497
            MP +PD   W  +L A  ++ L
Sbjct: 222 EMP-EPDVICWTAVLSAFSKNDL 243


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  348 bits (892), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 180/560 (32%), Positives = 315/560 (56%), Gaps = 4/560 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+KSY +   ++ A  LF+E+ ++D V++  +I GY     + +A  +F++M ++   P+
Sbjct: 184 LLKSYCEVRRLDLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPS 243

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
            FT S VLKA  G+   +    +HG+++  G      V N ++  Y+     ++  R +F
Sbjct: 244 DFTFSGVLKAVVGLHDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLET-RNLF 302

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           N+M   + VS+  +I+ Y+ +      L +F+EM   G +   + F+  +   A+   + 
Sbjct: 303 NEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQ 362

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            G+ +H   I     S L V NS++DMY + +   +A   F  ++++  ++W  +I+GY 
Sbjct: 363 VGRQVHCQAIVATADSILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYV 422

Query: 292 KSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           + G     L +F+KM+      +  TF +++ A A  A+L  G+Q+HA I+R G   N+ 
Sbjct: 423 QKGLHGAGLKLFTKMRGANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRSGNLENVF 482

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
             + L+DMYAKCG+I D+ ++F EM DR+ V+W +++  Y  +G G+ AI  F +M++SG
Sbjct: 483 SGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQSG 542

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEA 469
           ++PD +  + VL ACSH G V++G ++F++M+  Y + P K+ Y C++DLLGR GR  EA
Sbjct: 543 LQPDSVSILGVLIACSHCGFVEQGTEFFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEA 602

Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDL-KPNMMGTYIILSNIYAA 528
            +L+  MPF+PDE +W  +L AC+ ++  +L + AA ++  + K      Y+ +SNIYAA
Sbjct: 603 EKLMDEMPFEPDEIMWSSVLNACRIYKNQSLAERAAEQLFSMEKLRDAAAYVSMSNIYAA 662

Query: 529 EGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRH 588
            GKWE     +K MR  G KK    SW+EV  K+  F +ND+   +   +   +  L   
Sbjct: 663 AGKWENVRHVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVKKINELTTE 722

Query: 589 MNETAYEPDIDCLIHDLEGE 608
           +    Y+PD   ++ D++ +
Sbjct: 723 IEREGYKPDTSSVVQDIDEQ 742



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 136/462 (29%), Positives = 240/462 (51%), Gaps = 21/462 (4%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P   ++    +I  Y   G +  AR LFD MP+R VV+WT+++  Y   N  ++A+ +F
Sbjct: 70  MPHKNTVSTNTMISGYVKMGDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLF 129

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVE--NSLMDVYA 158
            +M R+   P+  T +++L  C      +    VH  A+K G + ++++   N L+  Y 
Sbjct: 130 RQMCRSCTLPDYVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSY- 188

Query: 159 TCCI-SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSF 217
            C +  +D A ++F ++  K+ V++ TLITGY   G     + +F +M   G + + ++F
Sbjct: 189 -CEVRRLDLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTF 247

Query: 218 SIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE 277
           S  ++A       + G+ +H   +  GF  +  V N IL  Y + D + +    F+EM E
Sbjct: 248 SGVLKAVVGLHDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPE 307

Query: 278 KDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQV 336
            D +++N +I+ Y ++    E LN+F +M+   F    F F ++++  A L++L  G+QV
Sbjct: 308 LDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQV 367

Query: 337 HAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY---GAH 393
           H   +    D  L + N+L+DMYAKC    +++ IF  +S R  V+WT+++ GY   G H
Sbjct: 368 HCQAIVATADSILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLH 427

Query: 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG--LVDEGLKYF--KSMNDYNVNPN 449
           G G   ++LF +M  + +R D+  F  VL A +     L+ + L  F  +S N  NV   
Sbjct: 428 GAG---LKLFTKMRGANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRSGNLENVFSG 484

Query: 450 KEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
             +    VD+  + G +K+A ++ + MP +   S W  L+ A
Sbjct: 485 SGL----VDMYAKCGSIKDAVQVFEEMPDRNAVS-WNALISA 521



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 120/282 (42%), Gaps = 42/282 (14%)

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
           + + A +IK GF ++    N  ++   R   +S A + +DEM  K+ ++ NT+I+GY K 
Sbjct: 29  RRVDARIIKTGFNTDTCRSNFTVEDLLRRGQVSAALKVYDEMPHKNTVSTNTMISGYVKM 88

Query: 294 GS--------------------------------SECLNMFSKMKSERFSPNCFTFTSII 321
           G                                  E   +F +M      P+  TFT+++
Sbjct: 89  GDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMCRSCTLPDYVTFTTLL 148

Query: 322 AACATLAALSCGQQVHAGIVRRGLDGNLALA--NALIDMYAKCGNISDSQKIFSEMSDRD 379
             C      +   QVHA  V+ G D NL L   N L+  Y +   +  +  +F E+ D+D
Sbjct: 149 PGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLACVLFEEILDKD 208

Query: 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439
            VT+ +++ GY   G   EAI LF +M +SG +P    F  VL A    GL D  L   +
Sbjct: 209 SVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAV--VGLHDFALG--Q 264

Query: 440 SMNDYNVNP----NKEIYGCVVDLLGRAGRVKEAYELIKSMP 477
            ++  +V      +  +   ++    +  RV E   L   MP
Sbjct: 265 QLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMP 306



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/201 (21%), Positives = 83/201 (41%), Gaps = 36/201 (17%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           + L+  Y   G I++A  +F+EMP+R+ VSW  +I+ Y        A   F +M+++ + 
Sbjct: 485 SGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQSGLQ 544

Query: 110 PNAFTLSSVLKAC-------KGMKSLSNAALVHGMAIKE----------GLEGSIYVENS 152
           P++ ++  VL AC       +G +     + ++G+  K+          G  G       
Sbjct: 545 PDSVSILGVLIACSHCGFVEQGTEFFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEK 604

Query: 153 LMD-------------------VYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSG 193
           LMD                   +Y    ++   A  +F+  K ++  ++ ++   YA +G
Sbjct: 605 LMDEMPFEPDEIMWSSVLNACRIYKNQSLAERAAEQLFSMEKLRDAAAYVSMSNIYAAAG 664

Query: 194 NGYGGLGVFKEMLLEGVEMNP 214
                  V K M   G++  P
Sbjct: 665 KWENVRHVKKAMRERGIKKVP 685


>gi|242037437|ref|XP_002466113.1| hypothetical protein SORBIDRAFT_01g001570 [Sorghum bicolor]
 gi|241919967|gb|EER93111.1| hypothetical protein SORBIDRAFT_01g001570 [Sorghum bicolor]
          Length = 693

 Score =  347 bits (891), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 192/547 (35%), Positives = 306/547 (55%), Gaps = 10/547 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + + LI+ Y   G +  A  +F  M   DVV +T +++         +A  V  +M+R  
Sbjct: 147 IGSCLIELYSRCGSMWAAEEVFRRMEAPDVVGYTSLVSALCRNGDLARAVEVLCQMMRQG 206

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + PN  T++S+L  C  M        +HG  +K     S+Y   +L+D Y+      D A
Sbjct: 207 LQPNEHTMTSMLAECPRMI----GEQIHGYMLKVMGSQSVYASTALIDFYSRYG-DFDMA 261

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             VF ++  KN VSW +++      G     L VF EM+ E VE N ++FSIA+ AC S 
Sbjct: 262 ETVFENLDSKNVVSWCSMMQLCIRDGRLEDALRVFSEMISEAVEPNEFAFSIALGACGS- 320

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             V  G+ IH + IK    +++ V N++L MY R   +S+      ++   DL++W   I
Sbjct: 321 --VCLGRQIHCSAIKCNLMTDIRVSNALLSMYGRSGFVSEVEAVLGKIENPDLVSWTAAI 378

Query: 288 AGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           +   ++G SE  + +  +M SE F+PN + F+S +++CA LA L  G+Q+H   ++ G D
Sbjct: 379 SANFQNGFSEKAVALLLQMHSEGFTPNDYAFSSGLSSCADLALLDQGRQLHCLALKLGCD 438

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
             +   NALI+MY+KCG I  ++  F  M+  D+++W S++ G   HG     +E F EM
Sbjct: 439 FKVCTGNALINMYSKCGQIGSARLAFDVMNLHDVMSWNSLIHGLAQHGAANLVLEAFSEM 498

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGR 465
             SG +PD   F+AVL  C+HAGLV EG  +F+ M D Y + P    Y C++D+LGR GR
Sbjct: 499 CSSGWQPDDSTFIAVLVGCNHAGLVKEGETFFRLMTDRYGLTPTPSHYACMIDMLGRNGR 558

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
             EA  +IK+MPF+PD  +W  LL +CK H+  ++GKLA  ++++L      +Y+++SN+
Sbjct: 559 FDEALHMIKNMPFEPDVLIWKTLLASCKLHKNLDIGKLATDKLMELSERDSASYVLMSNL 618

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           YA   +W++  + R+ M  +G KK+ G SWIEV+++V  F+A D   S +  +Y +L  L
Sbjct: 619 YAMHEEWQDAERVRRRMDEIGVKKDAGWSWIEVKNEVSTFVARDTSHSDSASIYQMLAEL 678

Query: 586 IRHMNET 592
           +  M +T
Sbjct: 679 VVVMQDT 685



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 123/505 (24%), Positives = 238/505 (47%), Gaps = 31/505 (6%)

Query: 3   TKRLLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLI 62
           T RLL  A T H    PP           ++++   P  P    +L    + +    G +
Sbjct: 10  TLRLLP-APTSHVIARPP--------TAAANVRLGAP--PPPDVVLDCKRLDALMKSGRL 58

Query: 63  EEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAF--TLSSVLK 120
            +A  LFD MP ++VV+WT  I+G T       A  +F +M+ + V  N F    +    
Sbjct: 59  SDALDLFDRMPRKNVVAWTTAISGCTRNGQPEAAAAMFADMLESGVAANDFACNAALAAC 118

Query: 121 ACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDV 180
           A  G  +LS    VH +A++ G     ++ + L+++Y+ C  SM  A  VF  M+  + V
Sbjct: 119 AAAGAGALSLGEQVHSLAVRAGFAADAWIGSCLIELYSRCG-SMWAAEEVFRRMEAPDVV 177

Query: 181 SWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAV 240
            +T+L++    +G+    + V  +M+ +G++ N ++ +  +  C        G+ IH  +
Sbjct: 178 GYTSLVSALCRNGDLARAVEVLCQMMRQGLQPNEHTMTSMLAECPRM----IGEQIHGYM 233

Query: 241 IKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CL 299
           +K     ++    +++D Y R+     A   F+ +  K++++W +++    + G  E  L
Sbjct: 234 LKVMGSQSVYASTALIDFYSRYGDFDMAETVFENLDSKNVVSWCSMMQLCIRDGRLEDAL 293

Query: 300 NMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMY 359
            +FS+M SE   PN F F+  + AC ++     G+Q+H   ++  L  ++ ++NAL+ MY
Sbjct: 294 RVFSEMISEAVEPNEFAFSIALGACGSVC---LGRQIHCSAIKCNLMTDIRVSNALLSMY 350

Query: 360 AKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFM 419
            + G +S+ + +  ++ + DLV+WT+ +     +G  ++A+ L  +M   G  P+   F 
Sbjct: 351 GRSGFVSEVEAVLGKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFTPNDYAFS 410

Query: 420 AVLTACSHAGLVDEGLKY----FKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKS 475
           + L++C+   L+D+G +      K   D+ V     +    +++  + G++  A      
Sbjct: 411 SGLSSCADLALLDQGRQLHCLALKLGCDFKVCTGNAL----INMYSKCGQIGSARLAFDV 466

Query: 476 MPFKPDESVWGPLLGACKEHRLPNL 500
           M    D   W  L+    +H   NL
Sbjct: 467 MNLH-DVMSWNSLIHGLAQHGAANL 490


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Glycine max]
          Length = 1033

 Score =  347 bits (891), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 199/567 (35%), Positives = 316/567 (55%), Gaps = 13/567 (2%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++   L+  Y     I+ AR++F  MP +D VSW  +I+G        +A   F  M RN
Sbjct: 391 LIGNALVNLYAKCNAIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRN 450

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA-TCCISMD 165
            + P+ F++ S L +C  +  +     +HG  IK GL+  + V N+L+ +YA T C  M+
Sbjct: 451 GMVPSKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETDC--ME 508

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHS-GNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
             + VF  M   + VSW + I   A S  +    +  F EM+  G + N  +F   + A 
Sbjct: 509 EYQKVFFLMPEYDQVSWNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFINILSAV 568

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLITW 283
           +S   +  G+ IHA ++KH    +  + N++L  Y + + + D    F  M+E+ D ++W
Sbjct: 569 SSLSLLELGRQIHALILKHSVADDNAIENTLLAFYGKCEQMEDCEIIFSRMSERRDEVSW 628

Query: 284 NTIIAGYEKSG---SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           N +I+GY  +G    +  L      K +R     FT  ++++ACA++A L  G +VHA  
Sbjct: 629 NAMISGYIHNGILHKAMGLVWLMMQKGQRLDD--FTLATVLSACASVATLERGMEVHACA 686

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           +R  L+  + + +AL+DMYAKCG I  + + F  M  R++ +W SM+ GY  HGHG +A+
Sbjct: 687 IRACLEAEVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGGKAL 746

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDL 459
           +LF +M + G  PD + F+ VL+ACSH GLVDEG ++FKSM + Y + P  E + C+VDL
Sbjct: 747 KLFTQMKQHGQLPDHVTFVGVLSACSHVGLVDEGFEHFKSMGEVYELAPRIEHFSCMVDL 806

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGAC--KEHRLPNLGKLAALRVLDLKPNMMG 517
           LGRAG VK+  E IK+MP  P+  +W  +LGAC     R   LG+ AA  +++L+P    
Sbjct: 807 LGRAGDVKKLEEFIKTMPMNPNALIWRTILGACCRANSRNTELGRRAAKMLIELEPLNAV 866

Query: 518 TYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQY 577
            Y++LSN++AA GKWE+  + R  MR    KKE G SW+ ++D V  F+A D+     + 
Sbjct: 867 NYVLLSNMHAAGGKWEDVEEARLAMRNAEVKKEAGCSWVTMKDGVHVFVAGDQTHPEKEK 926

Query: 578 VYGVLEMLIRHMNETAYEPDIDCLIHD 604
           +Y  L+ ++  M +  Y P+    ++D
Sbjct: 927 IYDKLKEIMNKMRDLGYVPETKYALYD 953



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 117/455 (25%), Positives = 230/455 (50%), Gaps = 18/455 (3%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+  +   G +  A+ LFDEMP++++VSW+ +++GY      ++A  +F  ++   + PN
Sbjct: 80  LVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQNGMPDEACMLFRGIISAGLLPN 139

Query: 112 AFTLSSVLKACK--GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
            + + S L+AC+  G   L     +HG+  K      + + N LM +Y+ C  S+D+AR 
Sbjct: 140 HYAIGSALRACQELGPNMLKLGMEIHGLISKSPYASDMVLSNVLMSMYSHCSASIDDARR 199

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEM----NPYSF-SIAVRAC 224
           VF ++K K   SW ++I+ Y   G+      +F  M  E  E+    N Y+F S+   AC
Sbjct: 200 VFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQREATELNCRPNEYTFCSLVTVAC 259

Query: 225 A--STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           +    G     +++ A + K  F  +L V ++++  + R+  +  A   F++M +++ +T
Sbjct: 260 SLVDCGLTLLEQML-ARIEKSSFVKDLYVGSALVSGFARYGLIDSAKMIFEQMDDRNAVT 318

Query: 283 WNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALS----CGQQVH 337
            N ++ G  +     E   +F +MK +    N  ++  +++A    + L      GQ+VH
Sbjct: 319 MNGLMVGLARQHQGEEAAKIFKEMK-DLVEINASSYAVLLSAFTEFSNLKEGKRKGQEVH 377

Query: 338 AGIVRRGL-DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHG 396
           A ++R  L D  + + NAL+++YAKC  I +++ IF  M  +D V+W S++ G   +   
Sbjct: 378 AYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQLMPSKDTVSWNSIISGLDHNERF 437

Query: 397 KEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCV 456
           +EA+  F  M ++G+ P +   ++ L++C+  G +  G +         ++ +  +   +
Sbjct: 438 EEAVACFHTMRRNGMVPSKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNAL 497

Query: 457 VDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
           + L      ++E  ++   MP + D+  W   +GA
Sbjct: 498 LTLYAETDCMEEYQKVFFLMP-EYDQVSWNSFIGA 531



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 139/281 (49%), Gaps = 16/281 (5%)

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG- 294
           +H  + K G  S++   N++++++ R   L  A + FDEM +K+L++W+ +++GY ++G 
Sbjct: 61  LHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQNGM 120

Query: 295 SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAA--LSCGQQVHAGIVRRGLDGNLALA 352
             E   +F  + S    PN +   S + AC  L    L  G ++H  I +     ++ L+
Sbjct: 121 PDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYASDMVLS 180

Query: 353 NALIDMYAKC-GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411
           N L+ MY+ C  +I D++++F E+  +   +W S++  Y   G    A +LF  M +   
Sbjct: 181 NVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQREAT 240

Query: 412 ----RPDRIVFMAVLT-ACSHAGLVDEGLKYFKSMNDYNVNPN--KEIY--GCVVDLLGR 462
               RP+   F +++T ACS   LVD GL   + M       +  K++Y    +V    R
Sbjct: 241 ELNCRPNEYTFCSLVTVACS---LVDCGLTLLEQMLARIEKSSFVKDLYVGSALVSGFAR 297

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKL 503
            G +  A  + + M  +   ++ G ++G  ++H+     K+
Sbjct: 298 YGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKI 338



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 55/97 (56%)

Query: 333 GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA 392
             Q+H  I + GL  ++   N L++++ + GN+  +QK+F EM  ++LV+W+ ++ GY  
Sbjct: 58  AHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQ 117

Query: 393 HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
           +G   EA  LF  ++ +G+ P+     + L AC   G
Sbjct: 118 NGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELG 154


>gi|357118484|ref|XP_003560984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial-like [Brachypodium distachyon]
          Length = 678

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 179/515 (34%), Positives = 296/515 (57%), Gaps = 3/515 (0%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   +  NL+  Y   G ++ AR +FD +P+R+VVSWT M++G        +   +F EM
Sbjct: 160 GDLFVMNNLVDMYAKGGDLKNARKVFDRIPDRNVVSWTSMLSGCLQNGLAKEGLVLFNEM 219

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
            +  + P+ +T++SVL AC  + SL    L+HG  +K GL  + ++  +++D+Y  C  +
Sbjct: 220 RQESILPSEYTMASVLMACTMLGSLHQGRLIHGSVMKHGLVSNHFITAAMLDMYVKCGEA 279

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
            D AR VF+++ + + V WTT+I GY  +G+    L +F +     +  N  + +  + A
Sbjct: 280 ED-ARQVFDELSFVDLVLWTTMIVGYTQNGSPLDALLLFVDDKFMRIVPNSVTIATVLSA 338

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
            A    +S G+ IH   +K G   N  VMN+++DMY +   LSDA   F  +  KD++TW
Sbjct: 339 SAQLRNLSLGRSIHGISVKLGAVENDVVMNALVDMYAKCKALSDAKGIFGRVLNKDVVTW 398

Query: 284 NTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N++IAGY E    S+ L +FS M+ +   P+  +  + ++AC  L  L  G+  H   V+
Sbjct: 399 NSLIAGYAENDMGSDALMLFSHMRVQGSLPDAISVVNALSACVCLGDLLIGKCFHTYAVK 458

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
                N+ +  AL+++Y KC ++  +Q++FSEM+DR+ VTW +M+ GYG  G    +I+L
Sbjct: 459 HAFMSNIYVNTALLNLYNKCADLPSAQRVFSEMNDRNTVTWGAMIGGYGMQGDSAGSIDL 518

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDY-NVNPNKEIYGCVVDLLG 461
           F+EM+K  ++P+  VF ++L+ CSH G+V  G K F+SM  Y N+ P+ + Y C+VD+L 
Sbjct: 519 FNEMLKDNIQPNEAVFTSILSTCSHTGMVTVGKKCFESMAHYFNITPSMKHYACMVDVLA 578

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           RAG ++EA E I+ MP + D S+W   L  CK H      + A  R++ L P+     ++
Sbjct: 579 RAGNLEEALEFIQKMPMQADTSIWQAFLHGCKLHSRLEFAEEAVNRMMVLHPDTPDFCVM 638

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWI 556
           +SN+Y + G+W++    RK+M+  G  K  G S +
Sbjct: 639 MSNLYTSYGRWDKSLAIRKLMKERGLVKLPGCSSV 673



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 198/396 (50%), Gaps = 20/396 (5%)

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           + NP    L  +L AC  + SL     +H   +  GL   +     L+  YA     + +
Sbjct: 26  DANP---LLHRLLPACTTLPSLRA---LHARLLAHGLLRGLRAHTKLLSCYAALG-DLAS 78

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE--GVEMNPYSFSIAVRAC 224
           AR V ++    +  ++   +  +A +G     + V ++M       + +    S+A++A 
Sbjct: 79  ARRVLDETPHPDAYTYKVALGWHAAAGRHAEAVAVHRDMRRRCPAEQEDVVVLSLALKAA 138

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
             +    +G+ +H  V+K G G +L VMN+++DMY +   L +A + FD + ++++++W 
Sbjct: 139 VRSADFGYGRRLHCDVVKAG-GGDLFVMNNLVDMYAKGGDLKNARKVFDRIPDRNVVSWT 197

Query: 285 TIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           ++++G  ++G + E L +F++M+ E   P+ +T  S++ AC  L +L  G+ +H  +++ 
Sbjct: 198 SMLSGCLQNGLAKEGLVLFNEMRQESILPSEYTMASVLMACTMLGSLHQGRLIHGSVMKH 257

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           GL  N  +  A++DMY KCG   D++++F E+S  DLV WT+M++GY  +G   +A+ LF
Sbjct: 258 GLVSNHFITAAMLDMYVKCGEAEDARQVFDELSFVDLVLWTTMIVGYTQNGSPLDALLLF 317

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN----PNKEIYGCVVDL 459
            +     + P+ +    VL+A +        L   +S++  +V      N  +   +VD+
Sbjct: 318 VDDKFMRIVPNSVTIATVLSASAQL----RNLSLGRSIHGISVKLGAVENDVVMNALVDM 373

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
             +   + +A  +   +    D   W  L+    E+
Sbjct: 374 YAKCKALSDAKGIFGRV-LNKDVVTWNSLIAGYAEN 408


>gi|326515658|dbj|BAK07075.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 796

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 186/553 (33%), Positives = 308/553 (55%), Gaps = 12/553 (2%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   ++ +L+  Y   G + +AR +FD   ERD VSW  +++GY      +    VF  M
Sbjct: 147 GGVFVSNSLVSMYARCGDMGQARQVFDAADERDDVSWNALVSGYVRAGAQDDMLRVFAMM 206

Query: 104 VRNEVNPNAFTLSSVLKACKGMKS--LSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
            R+ +  N+F L SV+K C G     +  AA VHG  +K G +  +++ ++++ +YA   
Sbjct: 207 RRSGIGLNSFALGSVIKCCAGSDDPVMDIAAAVHGCVVKAGFDSDVFLASAMVGMYAKKG 266

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYG------GLGVFKEMLLEGVEMNPY 215
            ++  A  +F  +   N V +  +I G        G       L ++ E+   G+E   +
Sbjct: 267 -ALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVGTDVLREALSLYSEVQSRGMEPTEF 325

Query: 216 SFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM 275
           +FS  +RAC   G + FGK IH  V+KH F  +  + ++++D+Y    C+ D  + F  +
Sbjct: 326 TFSSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDFIGSALIDLYLNSGCMEDGFRCFTSV 385

Query: 276 TEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334
            ++D++TW  +I+G  ++   E  L +F ++      P+ FT +S++ ACA+LA    G+
Sbjct: 386 PKQDVVTWTAMISGCVQNELFERALTLFHELLGAGLKPDPFTISSVMNACASLAVARTGE 445

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
           Q+     + G     A+ N+ I MYA+ G++  + + F EM   D+V+W++++  +  HG
Sbjct: 446 QIQCFATKSGFGRFTAMGNSCIHMYARSGDVHAAVRRFQEMESHDIVSWSAVISSHAQHG 505

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIY 453
             ++A+  F+EMV + V P+ I F+ VLTACSH GLVDEGLKY+++M + Y ++P  +  
Sbjct: 506 CARDALRFFNEMVDAKVVPNEITFLGVLTACSHGGLVDEGLKYYETMKEEYALSPTIKHC 565

Query: 454 GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513
            CVVDLLGRAGR+ +A   I+   F  +  +W  LL +C+ HR    G+L A R+++L+P
Sbjct: 566 TCVVDLLGRAGRLADAEAFIRDSIFHDEPVIWRSLLASCRIHRDMERGQLVADRIMELQP 625

Query: 514 NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGS 573
           +   +Y+ L NIY   G+    +K R +M+  G KKE G+SWIE+R  V  F+A DK   
Sbjct: 626 SSSASYVNLYNIYLDAGELSLASKIRDVMKERGVKKEPGLSWIELRSGVHSFVAGDKSHP 685

Query: 574 HTQYVYGVL-EML 585
            +  +Y  L EML
Sbjct: 686 ESNAIYSKLAEML 698



 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 125/462 (27%), Positives = 229/462 (49%), Gaps = 15/462 (3%)

Query: 45  PSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           PS+   N L+ +Y   G    AR L DEMP  + VS+ ++I  Y+       +   F   
Sbjct: 47  PSLFLRNTLLAAYCRLG--GHARRLLDEMPRTNAVSFNLLIDAYSRAGQPEASLETFARA 104

Query: 104 VRNE-VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
            R+  V  + FT ++ L AC     L     VH +++ EG+ G ++V NSL+ +YA C  
Sbjct: 105 RRSAGVRADRFTYAAALAACSRAGRLREGKAVHALSVLEGIAGGVFVSNSLVSMYARCG- 163

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            M  AR VF+    ++DVSW  L++GY  +G     L VF  M   G+ +N ++    ++
Sbjct: 164 DMGQARQVFDAADERDDVSWNALVSGYVRAGAQDDMLRVFAMMRRSGIGLNSFALGSVIK 223

Query: 223 ACASTG--WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
            CA +    +     +H  V+K GF S++ + ++++ MY +   LS+A   F  + + ++
Sbjct: 224 CCAGSDDPVMDIAAAVHGCVVKAGFDSDVFLASAMVGMYAKKGALSEAVALFKSVLDPNV 283

Query: 281 ITWNTIIAGYEKSGSS-------ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG 333
           + +N +IAG  +  ++       E L+++S+++S    P  FTF+S+I AC     +  G
Sbjct: 284 VVFNAMIAGLCRDEAAVGTDVLREALSLYSEVQSRGMEPTEFTFSSVIRACNLAGDIEFG 343

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
           +Q+H  +++    G+  + +ALID+Y   G + D  + F+ +  +D+VTWT+M+ G   +
Sbjct: 344 KQIHGQVLKHCFQGDDFIGSALIDLYLNSGCMEDGFRCFTSVPKQDVVTWTAMISGCVQN 403

Query: 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIY 453
              + A+ LF E++ +G++PD     +V+ AC+   +   G +               + 
Sbjct: 404 ELFERALTLFHELLGAGLKPDPFTISSVMNACASLAVARTGEQIQCFATKSGFGRFTAMG 463

Query: 454 GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
              + +  R+G V  A    + M    D   W  ++ +  +H
Sbjct: 464 NSCIHMYARSGDVHAAVRRFQEME-SHDIVSWSAVISSHAQH 504



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 105/389 (26%), Positives = 196/389 (50%), Gaps = 17/389 (4%)

Query: 119 LKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKN 178
           L++C   +   +AA VH   ++     S+++ N+L+  Y   C    +AR + ++M   N
Sbjct: 24  LRSCSAPR---HAAAVHAHIVRAHPSPSLFLRNTLLAAY---CRLGGHARRLLDEMPRTN 77

Query: 179 DVSWTTLITGYAHSGNGYGGLGVF-KEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIH 237
            VS+  LI  Y+ +G     L  F +     GV  + ++++ A+ AC+  G +  GK +H
Sbjct: 78  AVSFNLLIDAYSRAGQPEASLETFARARRSAGVRADRFTYAAALAACSRAGRLREGKAVH 137

Query: 238 AAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS- 296
           A  +  G    + V NS++ MY R   +  A Q FD   E+D ++WN +++GY ++G+  
Sbjct: 138 ALSVLEGIAGGVFVSNSLVSMYARCGDMGQARQVFDAADERDDVSWNALVSGYVRAGAQD 197

Query: 297 ECLNMFSKMKSERFSPNCFTFTSIIAACATL--AALSCGQQVHAGIVRRGLDGNLALANA 354
           + L +F+ M+      N F   S+I  CA      +     VH  +V+ G D ++ LA+A
Sbjct: 198 DMLRVFAMMRRSGIGLNSFALGSVIKCCAGSDDPVMDIAAAVHGCVVKAGFDSDVFLASA 257

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY----GAHGHG--KEAIELFDEMVK 408
           ++ MYAK G +S++  +F  + D ++V + +M+ G      A G    +EA+ L+ E+  
Sbjct: 258 MVGMYAKKGALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVGTDVLREALSLYSEVQS 317

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKE 468
            G+ P    F +V+ AC+ AG ++ G +    +  +    +  I   ++DL   +G +++
Sbjct: 318 RGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDFIGSALIDLYLNSGCMED 377

Query: 469 AYELIKSMPFKPDESVWGPLLGACKEHRL 497
            +    S+P K D   W  ++  C ++ L
Sbjct: 378 GFRCFTSVP-KQDVVTWTAMISGCVQNEL 405



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 115/248 (46%), Gaps = 3/248 (1%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           +G   + + LI  Y + G +E+    F  +P++DVV+WT MI+G        +A T+F E
Sbjct: 356 QGDDFIGSALIDLYLNSGCMEDGFRCFTSVPKQDVVTWTAMISGCVQNELFERALTLFHE 415

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           ++   + P+ FT+SSV+ AC  +        +   A K G      + NS + +YA    
Sbjct: 416 LLGAGLKPDPFTISSVMNACASLAVARTGEQIQCFATKSGFGRFTAMGNSCIHMYARSG- 474

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            +  A   F +M+  + VSW+ +I+ +A  G     L  F EM+   V  N  +F   + 
Sbjct: 475 DVHAAVRRFQEMESHDIVSWSAVISSHAQHGCARDALRFFNEMVDAKVVPNEITFLGVLT 534

Query: 223 ACASTGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYF-DEMTEKDL 280
           AC+  G V  G K       ++     +     ++D+  R   L+DA  +  D +   + 
Sbjct: 535 ACSHGGLVDEGLKYYETMKEEYALSPTIKHCTCVVDLLGRAGRLADAEAFIRDSIFHDEP 594

Query: 281 ITWNTIIA 288
           + W +++A
Sbjct: 595 VIWRSLLA 602


>gi|357132450|ref|XP_003567843.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Brachypodium distachyon]
          Length = 868

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 195/547 (35%), Positives = 311/547 (56%), Gaps = 4/547 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+  Y   G +E AR +FD M   D +SW  MIAG+   +       +F+ M+ +EV PN
Sbjct: 236 LVTMYAKCGDVEAARKVFDGMSLTDCISWNAMIAGHFENHECEAGLELFLHMLEDEVEPN 295

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
             T++SV  A   +  L  A  +H +A+K G    +   NSL+ +Y++    M  A  VF
Sbjct: 296 LMTITSVTVASGLLSDLDFAKEIHALAVKRGFATDVAFCNSLIQMYSSLG-RMGEACTVF 354

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           + M+ ++ +SWT +I+GY  +G     L V+  M +  V  +  + + A+ ACAS G + 
Sbjct: 355 SRMETRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDVTVASALAACASLGRLD 414

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY- 290
            G  +H      GF   + V N++++MY +   +  A + F  M +KD+I+W+++IAG+ 
Sbjct: 415 VGIKLHELATSKGFIRYIVVANALVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAGFC 474

Query: 291 EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
               + E L  F  M ++   PN  TF + +AACA   +L CG+++HA ++R+G+     
Sbjct: 475 FNHKNFEALYYFRHMLAD-VKPNSVTFIAALAACAATGSLRCGKEIHAHVLRQGIASEGY 533

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           + NAL+D+Y KCG    +   F     +D+V+W  M+ G+ AHGHG  A+  F+EM+++G
Sbjct: 534 VPNALLDLYVKCGQTGYAWAQFGAHGTKDVVSWNIMLAGFVAHGHGDIALSFFNEMLETG 593

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEA 469
             PD + F+A+L  CS AG+V +G + F SM + Y++ PN + Y C+VDLL R GR+ E 
Sbjct: 594 EHPDEVTFVALLCGCSRAGMVSQGWELFHSMTEKYSIVPNLKHYACMVDLLSRVGRLTEG 653

Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529
           Y  I  MP  PD +VWG LL  C+ HR   LG+LAA  VL+L+PN  G +++LS++YA  
Sbjct: 654 YNFINRMPITPDAAVWGALLNGCRIHRNIELGELAAKIVLELEPNDAGYHVLLSDLYADA 713

Query: 530 GKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHM 589
           G W E +K RK MR  G + + G SW+EV+  +  F+ +D+     + +  VL+ +   M
Sbjct: 714 GMWAEVSKVRKTMRVKGLEHDYGCSWVEVKGAIHAFLTDDESHPQIKEINDVLDGIYERM 773

Query: 590 NETAYEP 596
             + + P
Sbjct: 774 KASGFAP 780



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 123/407 (30%), Positives = 213/407 (52%), Gaps = 3/407 (0%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           A  +F +MPERDV SW VM+ GY       +A  ++  M+     P+ +T   VL++C G
Sbjct: 148 AWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAGARPDVYTFPCVLRSCGG 207

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTT 184
           +  L+    VH   ++ GL   + V N+L+ +YA C   ++ AR VF+ M   + +SW  
Sbjct: 208 VPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCG-DVEAARKVFDGMSLTDCISWNA 266

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG 244
           +I G+  +     GL +F  ML + VE N  + +    A      + F K IHA  +K G
Sbjct: 267 MIAGHFENHECEAGLELFLHMLEDEVEPNLMTITSVTVASGLLSDLDFAKEIHALAVKRG 326

Query: 245 FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFS 303
           F +++   NS++ MY     + +A   F  M  +D ++W  +I+GYEK+G   + L +++
Sbjct: 327 FATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISGYEKNGFPDKALEVYA 386

Query: 304 KMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG 363
            M+    SP+  T  S +AACA+L  L  G ++H     +G    + +ANAL++MYAK  
Sbjct: 387 LMEVNNVSPDDVTVASALAACASLGRLDVGIKLHELATSKGFIRYIVVANALVEMYAKSK 446

Query: 364 NISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLT 423
            I  + ++F  M D+D+++W+SM+ G+  +    EA+  F  M+ + V+P+ + F+A L 
Sbjct: 447 IIEKAIEVFKYMPDKDVISWSSMIAGFCFNHKNFEALYYFRHML-ADVKPNSVTFIAALA 505

Query: 424 ACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470
           AC+  G +  G +    +    +     +   ++DL  + G+   A+
Sbjct: 506 ACAATGSLRCGKEIHAHVLRQGIASEGYVPNALLDLYVKCGQTGYAW 552



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 104/349 (29%), Positives = 182/349 (52%), Gaps = 7/349 (2%)

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           VF  M  ++  SW  ++ GY  +G     L ++  ML  G   + Y+F   +R+C     
Sbjct: 151 VFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAGARPDVYTFPCVLRSCGGVPD 210

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           ++ G+ +HA V++ G G  + V+N+++ MY +   +  A + FD M+  D I+WN +IAG
Sbjct: 211 LTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEAARKVFDGMSLTDCISWNAMIAG 270

Query: 290 YEKSGSSEC-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           + ++   E  L +F  M  +   PN  T TS+  A   L+ L   +++HA  V+RG   +
Sbjct: 271 HFENHECEAGLELFLHMLEDEVEPNLMTITSVTVASGLLSDLDFAKEIHALAVKRGFATD 330

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           +A  N+LI MY+  G + ++  +FS M  RD ++WT+M+ GY  +G   +A+E++  M  
Sbjct: 331 VAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISGYEKNGFPDKALEVYALMEV 390

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKE 468
           + V PD +   + L AC+  G +D G+K  +            +   +V++  ++  +++
Sbjct: 391 NNVSPDDVTVASALAACASLGRLDVGIKLHELATSKGFIRYIVVANALVEMYAKSKIIEK 450

Query: 469 AYELIKSMPFKPDESVWGPLL-GACKEHRLPNLGKLAALR--VLDLKPN 514
           A E+ K MP K D   W  ++ G C  H+  N   L   R  + D+KPN
Sbjct: 451 AIEVFKYMPDK-DVISWSSMIAGFCFNHK--NFEALYYFRHMLADVKPN 496



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 103/346 (29%), Positives = 180/346 (52%), Gaps = 5/346 (1%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
           +LI+ Y   G + EA T+F  M  RD +SWT MI+GY      ++A  V+  M  N V+P
Sbjct: 336 SLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSP 395

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           +  T++S L AC  +  L     +H +A  +G    I V N+L+++YA   I ++ A  V
Sbjct: 396 DDVTVASALAACASLGRLDVGIKLHELATSKGFIRYIVVANALVEMYAKSKI-IEKAIEV 454

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F  M  K+ +SW+++I G+  +   +  L  F+ ML + V+ N  +F  A+ ACA+TG +
Sbjct: 455 FKYMPDKDVISWSSMIAGFCFNHKNFEALYYFRHMLAD-VKPNSVTFIAALAACAATGSL 513

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
             GK IHA V++ G  S   V N++LD+Y +      A   F     KD+++WN ++AG+
Sbjct: 514 RCGKEIHAHVLRQGIASEGYVPNALLDLYVKCGQTGYAWAQFGAHGTKDVVSWNIMLAGF 573

Query: 291 EKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQV-HAGIVRRGLDGN 348
              G  +  L+ F++M      P+  TF +++  C+    +S G ++ H+   +  +  N
Sbjct: 574 VAHGHGDIALSFFNEMLETGEHPDEVTFVALLCGCSRAGMVSQGWELFHSMTEKYSIVPN 633

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAH 393
           L     ++D+ ++ G +++     + M    D   W +++ G   H
Sbjct: 634 LKHYACMVDLLSRVGRLTEGYNFINRMPITPDAAVWGALLNGCRIH 679



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 150/285 (52%), Gaps = 14/285 (4%)

Query: 237 HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS- 295
           HA      FG  L + N++L M  RF     A + F +M E+D+ +WN ++ GY K+G  
Sbjct: 119 HADAAHGTFG--LRLGNAMLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFL 176

Query: 296 SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
            E L+++ +M      P+ +TF  ++ +C  +  L+ G++VHA ++R GL   + + NAL
Sbjct: 177 EEALDLYHRMLWAGARPDVYTFPCVLRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLNAL 236

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           + MYAKCG++  ++K+F  MS  D ++W +M+ G+  +   +  +ELF  M++  V P+ 
Sbjct: 237 VTMYAKCGDVEAARKVFDGMSLTDCISWNAMIAGHFENHECEAGLELFLHMLEDEVEPNL 296

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN--KEIYGC--VVDLLGRAGRVKEAYE 471
           +   +V  A   +GL+ + L + K ++   V      ++  C  ++ +    GR+ EA  
Sbjct: 297 MTITSVTVA---SGLLSD-LDFAKEIHALAVKRGFATDVAFCNSLIQMYSSLGRMGEACT 352

Query: 472 LIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPN 514
           +   M  + D   W  ++   +++  P+  L   A + V ++ P+
Sbjct: 353 VFSRMETR-DAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPD 396



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 117/245 (47%), Gaps = 4/245 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++A  L++ Y    +IE+A  +F  MP++DV+SW+ MIAG+  FN  N     +   +  
Sbjct: 433 VVANALVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAGFC-FNHKNFEALYYFRHMLA 491

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           +V PN+ T  + L AC    SL     +H   +++G+    YV N+L+D+Y  C      
Sbjct: 492 DVKPNSVTFIAALAACAATGSLRCGKEIHAHVLRQGIASEGYVPNALLDLYVKCG-QTGY 550

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A   F     K+ VSW  ++ G+   G+G   L  F EML  G   +  +F   +  C+ 
Sbjct: 551 AWAQFGAHGTKDVVSWNIMLAGFVAHGHGDIALSFFNEMLETGEHPDEVTFVALLCGCSR 610

Query: 227 TGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLITWN 284
            G VS G +L H+   K+    NL     ++D+  R   L++   + + M    D   W 
Sbjct: 611 AGMVSQGWELFHSMTEKYSIVPNLKHYACMVDLLSRVGRLTEGYNFINRMPITPDAAVWG 670

Query: 285 TIIAG 289
            ++ G
Sbjct: 671 ALLNG 675


>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 657

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 186/583 (31%), Positives = 322/583 (55%), Gaps = 40/583 (6%)

Query: 46  SILATNLIKSYFD------EGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTV 99
           S +A+ LI SY        +G +  AR LFD +PE D   +  ++  Y++ +C  +A  +
Sbjct: 42  SSVASQLIASYCTLSAGDRDGGLCHARRLFDRIPEPDRFMYNTLVRAYSNSDCPQEALRL 101

Query: 100 FVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
              +++  + PN FTL  VLKAC  ++++ +A   HG+ +K G    I+V N+L+  +A+
Sbjct: 102 HRGVLQRGILPNEFTLPFVLKACTTVRAVEHALAAHGVVVKLGFVQQIFVANALLHFHAS 161

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
              S+ ++R  F +M  +N VSW T+I GYA +G       +F EM  +G+  + ++   
Sbjct: 162 AG-SLRDSRRFFGEMADRNVVSWNTMIGGYAQAGEVSEACALFGEMRHQGLLADVFTLVS 220

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR----------FDCLSDAN 269
            + AC+S G +  G+L+H  ++  G   +  + N++LDMY +          FD +   N
Sbjct: 221 LLFACSSEGNLEVGRLVHCHMLVSGSRVDRILGNALLDMYGKCGDLWMAHRCFDMMPIKN 280

Query: 270 ---------------------QYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKS 307
                                 +F++M E+++++WN +I+ Y + G   E L+++++M+S
Sbjct: 281 VVTWTSMLCAQAKHGSVDAVRDWFEQMPERNIVSWNAMISCYVQCGRLHETLDLYNRMRS 340

Query: 308 ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISD 367
              +P+ FT   +++AC     L+ G+ +H  +     D  + L N+L+DMYA+CG +  
Sbjct: 341 LGITPDEFTLAGVLSACGQNGDLASGKMIHCYVRDNFNDPGVTLLNSLLDMYARCGQVDT 400

Query: 368 SQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH 427
           +  +F+EM ++++++W  ++     HG  +E +  F  MV     PD I F+ +L+ACSH
Sbjct: 401 AIGLFTEMPNKNVISWNVIIGALAMHGRAQETVTFFRTMVSDAFSPDEITFVGLLSACSH 460

Query: 428 AGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWG 486
            GL++ G  YF++M   YNV P  E YGC+VDLLGR G + +A  LIK M  KPD  VWG
Sbjct: 461 GGLLEAGEYYFEAMARVYNVEPEVEHYGCMVDLLGRRGHLAKAVNLIKDMSIKPDVVVWG 520

Query: 487 PLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546
            LLGAC+ H    +GKL   ++L+L+    G ++++ N++    +WE+  K RK+M+  G
Sbjct: 521 ALLGACRIHGNVEIGKLVIKQLLELEGITGGLFVLICNLFYETNQWEDMKKLRKLMKEQG 580

Query: 547 SKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHM 589
           +KK++G+S IEV++ +  F   D     T  +Y  ++ L  H+
Sbjct: 581 TKKDMGVSSIEVKNIIHEFGVEDLRHESTNEIYAAVDQLSYHL 623



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 146/322 (45%), Gaps = 19/322 (5%)

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDC------LSDANQYFDEMTEKDLITWNTIIAG 289
           IHA ++ HGF     V + ++  YC          L  A + FD + E D   +NT++  
Sbjct: 29  IHAHLVVHGFSDVSSVASQLIASYCTLSAGDRDGGLCHARRLFDRIPEPDRFMYNTLVRA 88

Query: 290 YEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           Y  S    E L +   +      PN FT   ++ AC T+ A+      H  +V+ G    
Sbjct: 89  YSNSDCPQEALRLHRGVLQRGILPNEFTLPFVLKACTTVRAVEHALAAHGVVVKLGFVQQ 148

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           + +ANAL+  +A  G++ DS++ F EM+DR++V+W +M+ GY   G   EA  LF EM  
Sbjct: 149 IFVANALLHFHASAGSLRDSRRFFGEMADRNVVSWNTMIGGYAQAGEVSEACALFGEMRH 208

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKE 468
            G+  D    +++L ACS  G ++ G      M       ++ +   ++D+ G+ G +  
Sbjct: 209 QGLLADVFTLVSLLFACSSEGNLEVGRLVHCHMLVSGSRVDRILGNALLDMYGKCGDLWM 268

Query: 469 AYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII----LSN 524
           A+     MP K +   W  +L A  +H     G + A+R  D    M    I+    + +
Sbjct: 269 AHRCFDMMPIK-NVVTWTSMLCAQAKH-----GSVDAVR--DWFEQMPERNIVSWNAMIS 320

Query: 525 IYAAEGKWEEFAKFRKIMRGMG 546
            Y   G+  E       MR +G
Sbjct: 321 CYVQCGRLHETLDLYNRMRSLG 342


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  347 bits (891), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 198/585 (33%), Positives = 318/585 (54%), Gaps = 31/585 (5%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPER------DVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           L+  Y   GL+++A++LF            DVV+W  MI+         +A  V  +MV 
Sbjct: 216 LLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCAEAVEVLYDMVS 275

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG-LEGSIYVENSLMDVYATCCISM 164
             V P+  T +S L AC  ++ L+    +H + +K+  L  + +V ++L+D+YA     +
Sbjct: 276 LGVRPDGVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYAGN-EKV 334

Query: 165 DNARLVFNDMKWKNDV--SWTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAV 221
            +AR VF+ +   +     W  +I GYA +G     L +F  M  E G   +  + S  +
Sbjct: 335 ASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVL 394

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
            ACA +   +  + +H  V+K G   N  V N+++DMY R   +  A + F  +  +D++
Sbjct: 395 PACARSEGFAGKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVV 454

Query: 282 TWNTIIAGYEKSG-SSECLNMFSKMK----------------SERFSPNCFTFTSIIAAC 324
           +WNT+I G    G ++E   + ++M+                + R  PN  T  +++  C
Sbjct: 455 SWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGC 514

Query: 325 ATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWT 384
           A LAA + G+++H   VR  L+ ++A+ +AL+DMYAKCG ++ S+ +F  +  R+++TW 
Sbjct: 515 AALAAPARGKEIHGYAVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRLPRRNVITWN 574

Query: 385 SMMIGYGAHGHGKEAIELFDEMVKSG-VRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-N 442
            +++ YG HG G EA+ LFDEM   G   P+ + F+A L ACSH+GLVD GL+ F  M  
Sbjct: 575 VLIMAYGMHGLGDEAVALFDEMAAGGEATPNEVTFIAALAACSHSGLVDRGLELFHGMER 634

Query: 443 DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDESVWGPLLGACKEHRLPNLG 501
           D+ V P  +++ CVVD+LGRAGR+ EAY +I SM P +   S W  LLGAC+ HR   LG
Sbjct: 635 DHGVKPTPDLHACVVDVLGRAGRLDEAYSIITSMEPGEQQVSAWSSLLGACRLHRNVELG 694

Query: 502 KLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDK 561
           ++AA R+ +L+P     Y++L NIY+A G W++    R  MR  G  KE G SWIE+   
Sbjct: 695 EVAAERLFELEPGEASHYVLLCNIYSAAGMWDKSVAVRVRMRRQGVAKEPGCSWIELDGA 754

Query: 562 VCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
           +  F+A +     +  V+  ++ L   M    Y PD  C++HD++
Sbjct: 755 IHRFMAGESSHPASAEVHAHMDALWERMRREGYAPDTSCVLHDVD 799



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 177/366 (48%), Gaps = 25/366 (6%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPE--RDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           S +A+ L+  Y     +  AR +FD +PE  R +  W  MI GY       +A  +F  M
Sbjct: 318 SFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRM 377

Query: 104 -VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
                  P+  T+S VL AC   +  +    +HG  +K G+ G+ +V+N+LMD+YA    
Sbjct: 378 EAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQNALMDMYARLG- 436

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLL--------------E 208
            MD AR +F  +  ++ VSW TLITG    G+      +  EM L              E
Sbjct: 437 EMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGE 496

Query: 209 GVEMNPYSFSIA--VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLS 266
                P + ++   +  CA+    + GK IH   ++H   S++ V ++++DMY +  CL+
Sbjct: 497 AHRCMPNNITLMTLLPGCAALAAPARGKEIHGYAVRHALESDIAVGSALVDMYAKCGCLA 556

Query: 267 DANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKS-ERFSPNCFTFTSIIAAC 324
            +   FD +  +++ITWN +I  Y   G   E + +F +M +    +PN  TF + +AAC
Sbjct: 557 ASRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPNEVTFIAALAAC 616

Query: 325 ATLAALSCGQQVHAGIVR-RGLDGNLALANALIDMYAKCGNISDSQKIFSEMS--DRDLV 381
           +    +  G ++  G+ R  G+     L   ++D+  + G + ++  I + M   ++ + 
Sbjct: 617 SHSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSIITSMEPGEQQVS 676

Query: 382 TWTSMM 387
            W+S++
Sbjct: 677 AWSSLL 682



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 119/265 (44%), Gaps = 23/265 (8%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   +   L+  Y   G ++ AR +F  +  RDVVSW  +I G        +A+ +  EM
Sbjct: 420 GNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEM 479

Query: 104 V----------------RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSI 147
                             +   PN  TL ++L  C  + + +    +HG A++  LE  I
Sbjct: 480 QLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEIHGYAVRHALESDI 539

Query: 148 YVENSLMDVYATC-CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEML 206
            V ++L+D+YA C C++   +R VF+ +  +N ++W  LI  Y   G G   + +F EM 
Sbjct: 540 AVGSALVDMYAKCGCLAA--SRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAVALFDEMA 597

Query: 207 LEG-VEMNPYSFSIAVRACASTGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264
             G    N  +F  A+ AC+ +G V  G +L H     HG      +   ++D+  R   
Sbjct: 598 AGGEATPNEVTFIAALAACSHSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGRAGR 657

Query: 265 LSDANQYFDEMT--EKDLITWNTII 287
           L +A      M   E+ +  W++++
Sbjct: 658 LDEAYSIITSMEPGEQQVSAWSSLL 682



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 107/220 (48%), Gaps = 25/220 (11%)

Query: 278 KDLITWNTIIAG------YEKSGSSECLNMFSKMKSE-RFSPNCFTFTSIIAACATLAA- 329
           +D +++N++I+       +E++     L+    M +E R   + FT  S++ AC+ L   
Sbjct: 131 RDAVSYNSLISALCLFRQWERA-----LDALRDMLAEGRHDVSSFTLVSVLLACSHLPGD 185

Query: 330 --LSCGQQVHAGIVRRGL--DGNLALA-NALIDMYAKCGNISDSQKIFSEMSDR------ 378
                G++ HA  ++RG   +G      NAL+ MYA+ G + D+Q +F   +        
Sbjct: 186 DGRRLGREAHAFALKRGFLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGG 245

Query: 379 DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK-Y 437
           D+VTW +M+      G   EA+E+  +MV  GVRPD + F + L ACS   ++  G + +
Sbjct: 246 DVVTWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMH 305

Query: 438 FKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMP 477
              + D ++  N  +   +VD+     +V  A  +   +P
Sbjct: 306 AVVLKDADLAANSFVASALVDMYAGNEKVASARRVFDMVP 345


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  347 bits (891), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 197/596 (33%), Positives = 320/596 (53%), Gaps = 36/596 (6%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +L   ++  +FD   +  A ++FD + E  ++ W  M  G+   +    A  ++V MV  
Sbjct: 40  LLEXCVLSPHFDG--LPYAISVFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSL 97

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA-------- 158
            + PN++T   +LK+C    +      +HG  +K G +  +Y+  SL+ +Y         
Sbjct: 98  GLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDA 157

Query: 159 ---------------TCCIS-------MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGY 196
                          T  I+       +++A  +F+++  K+ VSW   I+GYA +GN  
Sbjct: 158 QKVXDKSSHRDVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYK 217

Query: 197 GGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSIL 256
             L +FK+M+   V  +  +    + ACA +G +  G+ +H+ +  HGFG NL ++N+++
Sbjct: 218 EALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALI 277

Query: 257 DMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCF 315
           D+Y +   L  A   F  ++ KD+I+WNT+I GY       E L +F  M      PN  
Sbjct: 278 DLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDV 337

Query: 316 TFTSIIAACATLAALSCGQQVHAGIVRR--GLDGNLALANALIDMYAKCGNISDSQKIFS 373
           T  SI++ACA L A+  G+ +H  I +R  G+    +L  +LIDMYAKCG+I  +Q++F 
Sbjct: 338 TMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFD 397

Query: 374 EMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDE 433
            M +R L +W +M+ G+  HG    A ++F  M K+G+ PD I F+ +L+ACSH+G++D 
Sbjct: 398 SMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDL 457

Query: 434 GLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGAC 492
           G   F+SM  DY + P  E YGC++DL G +G  KEA ++I +M  +PD  +W  LL AC
Sbjct: 458 GRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKAC 517

Query: 493 KEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVG 552
           K H    LG+  A  ++ ++P   G+Y++LSNIYA   +W E AK R ++   G KK  G
Sbjct: 518 KMHGNVELGESYAQNLIKIEPENPGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPG 577

Query: 553 MSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
            S IE+   V  FI  DK     + +YG+LE +   + E  + PD   ++ ++E E
Sbjct: 578 CSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEE 633



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 40/77 (51%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S L T+LI  Y   G IE A+ +FD M  R + SW  MI G+      N A+ +F  M +
Sbjct: 373 SSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRK 432

Query: 106 NEVNPNAFTLSSVLKAC 122
           N + P+  T   +L AC
Sbjct: 433 NGIEPDDITFVGLLSAC 449


>gi|225428280|ref|XP_002279627.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17210-like [Vitis vinifera]
          Length = 742

 Score =  347 bits (890), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 196/561 (34%), Positives = 312/561 (55%), Gaps = 9/561 (1%)

Query: 45  PSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
           PS+   N + S + +  +E A  LFDEM ERDV+SW+VMI GY        A  +F+EM 
Sbjct: 185 PSV--QNSLLSMYADNDMERAEELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMT 242

Query: 105 RN-EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
            N  +  +  T+ SVLKAC     +S    VHG+ I  GL+  ++V NS++D+Y+ C   
Sbjct: 243 SNASIELDGITMVSVLKACANTGDISMGRSVHGVVICRGLDYDLFVGNSIIDMYSKC-DD 301

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
            ++A   FN+M  +N VSW ++I+G   +      L +F  M   G   +  +    +++
Sbjct: 302 HESAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQS 361

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C         K IH+ VI+ G+  N  V+NS++D Y + D +  A + FD +  KD ++W
Sbjct: 362 CKYFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLIELAWKLFDRLKTKDTVSW 421

Query: 284 NTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           + +IAG+   G   E + +F +M   +  PN  T  S++ A +  A L   +  H   +R
Sbjct: 422 SAMIAGFNHCGKPDEAIALFQEMNQAQEKPNGVTILSLLEAFSVSADLKRSKWAHGIAIR 481

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
           RGL   +A+  A++DMYAKCG I  S+K F ++ ++++V+W +M+   G +G  ++A+ L
Sbjct: 482 RGLAAEVAVGTAILDMYAKCGEIGLSRKAFDQIPEKNIVSWGAMIAACGMNGLARDALAL 541

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLG 461
             EM   G++P+ +  ++VL+ACSH GLV+EGL +F++M  D+ V P  E Y C+VD+L 
Sbjct: 542 LSEMKLHGLKPNVVTTLSVLSACSHGGLVEEGLSFFENMVQDHGVEPGLEHYSCMVDMLS 601

Query: 462 RAGRVKEAYELIKSMP--FKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
           RAG++  A  LI+ MP   +    +WG LL AC+      LG  AA RVL+L+P     Y
Sbjct: 602 RAGKLNSAMNLIEKMPERMRDGAGLWGALLSACRSSGNSRLGAGAAFRVLELEPQSSAGY 661

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVY 579
            + S++YAA G W + A+ R +++  G +   G S + V DK   F+A D+       ++
Sbjct: 662 FLASSMYAASGLWADAARMRWLVKARGVRVVAGYSLVHVEDKAWRFVAGDESHPRAGEIW 721

Query: 580 GVLEMLIRHMNETAYEPDIDC 600
           GV+E L   M + A   + DC
Sbjct: 722 GVVEQLHDCM-KIAERNESDC 741



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 138/481 (28%), Positives = 247/481 (51%), Gaps = 15/481 (3%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
           +++  Y   G ++ A  +FD M  RD VSW +MI G+ S    ++    F +       P
Sbjct: 89  SVLDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDKGLWWFRQARVIAFEP 148

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           N  TL   + AC+ + ++     +HG  I+ G      V+NSL+ +YA     M+ A  +
Sbjct: 149 NVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYADN--DMERAEEL 206

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG-VEMNPYSFSIAVRACASTGW 229
           F++M  ++ +SW+ +I GY  +G     L +F EM     +E++  +    ++ACA+TG 
Sbjct: 207 FDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSVLKACANTGD 266

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           +S G+ +H  VI  G   +L V NSI+DMY + D    A + F+EM  ++ ++WN+II+G
Sbjct: 267 ISMGRSVHGVVICRGLDYDLFVGNSIIDMYSKCDDHESAFKAFNEMPCRNTVSWNSIISG 326

Query: 290 YEKS-GSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
             ++   SE L++F  M    F  +  T  +++ +C         + +H+ ++R G + N
Sbjct: 327 LVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYELN 386

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
             + N+LID Y+KC  I  + K+F  +  +D V+W++M+ G+   G   EAI LF EM +
Sbjct: 387 EFVINSLIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQ 446

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN----PNKEIYGCVVDLLGRAG 464
           +  +P+ +  +++L A S    V   LK  K  +   +         +   ++D+  + G
Sbjct: 447 AQEKPNGVTILSLLEAFS----VSADLKRSKWAHGIAIRRGLAAEVAVGTAILDMYAKCG 502

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNMMGTYIIL 522
            +  + +    +P K   S WG ++ AC  + L    L  L+ +++  LKPN++ T  +L
Sbjct: 503 EIGLSRKAFDQIPEKNIVS-WGAMIAACGMNGLARDALALLSEMKLHGLKPNVVTTLSVL 561

Query: 523 S 523
           S
Sbjct: 562 S 562



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 131/457 (28%), Positives = 231/457 (50%), Gaps = 14/457 (3%)

Query: 117 SVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW 176
           S+LKAC  +  + +   +H   +K+G +      NS++D Y     ++D+A  VF+ M+ 
Sbjct: 55  SILKACSSLP-VRHGKSIHASLLKQGFDSLTSTGNSVLDFYMKTG-ALDSALFVFDSMRS 112

Query: 177 KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLI 236
           ++ VSW  +I G+   G    GL  F++  +   E N  +  +A+ AC S G +  G  +
Sbjct: 113 RDSVSWNIMIHGHLSRGASDKGLWWFRQARVIAFEPNVSTLVLAIHACRSLGAMEEGLKM 172

Query: 237 HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS 296
           H  +I+ GF     V NS+L MY   D +  A + FDEM E+D+I+W+ +I GY ++G +
Sbjct: 173 HGYIIRSGFLDIPSVQNSLLSMYADND-MERAEELFDEMCERDVISWSVMIGGYVQTGEA 231

Query: 297 E-CLNMFSKMKSE-RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
           +  L +F +M S      +  T  S++ ACA    +S G+ VH  ++ RGLD +L + N+
Sbjct: 232 KMALQLFLEMTSNASIELDGITMVSVLKACANTGDISMGRSVHGVVICRGLDYDLFVGNS 291

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
           +IDMY+KC +   + K F+EM  R+ V+W S++ G        EA+ LF  M K+G R D
Sbjct: 292 IIDMYSKCDDHESAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRAD 351

Query: 415 RIVFMAVLTACSHAGLVDE-GLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
            +  + +L +C +   VD    K+  S+   +    N+ +   ++D   +   ++ A++L
Sbjct: 352 EVTLVNLLQSCKY--FVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLIELAWKL 409

Query: 473 IKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNMMGTYIILSNI-YAAE 529
              +  K D   W  ++        P+  +     +     KPN +    +L     +A+
Sbjct: 410 FDRLKTK-DTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQEKPNGVTILSLLEAFSVSAD 468

Query: 530 GKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFI 566
            K  ++A    I RG+ ++  VG + +++  K CG I
Sbjct: 469 LKRSKWAHGIAIRRGLAAEVAVGTAILDMYAK-CGEI 504



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 98/330 (29%), Positives = 159/330 (48%), Gaps = 41/330 (12%)

Query: 202 FKEMLLEGVEM-NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYC 260
           + +M   G ++ +P      ++AC+S   V  GK IHA+++K GF S     NS+LD Y 
Sbjct: 37  YHQMKKAGAQLTDPTLVHSILKACSSLP-VRHGKSIHASLLKQGFDSLTSTGNSVLDFYM 95

Query: 261 RFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTS 319
           +   L  A   FD M  +D ++WN +I G+   G+S+  L  F + +   F PN  T   
Sbjct: 96  KTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDKGLWWFRQARVIAFEPNVSTLVL 155

Query: 320 IIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD 379
            I AC +L A+  G ++H  I+R G     ++ N+L+ MYA   ++  ++++F EM +RD
Sbjct: 156 AIHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYAD-NDMERAEELFDEMCERD 214

Query: 380 LVTWTSMMIGYGAHGHGKEAIELFDEMV-KSGVRPDRIVFMAVLTACSHAG--------- 429
           +++W+ M+ GY   G  K A++LF EM   + +  D I  ++VL AC++ G         
Sbjct: 215 VISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSVLKACANTGDISMGRSVH 274

Query: 430 --LVDEGLKY---------------------FKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
             ++  GL Y                     FK+ N+     N   +  ++  L R  + 
Sbjct: 275 GVVICRGLDYDLFVGNSIIDMYSKCDDHESAFKAFNEMPCR-NTVSWNSIISGLVRTEKH 333

Query: 467 KEAYELIKSM---PFKPDESVWGPLLGACK 493
            EA  L  SM    F+ DE     LL +CK
Sbjct: 334 SEALSLFYSMGKAGFRADEVTLVNLLQSCK 363


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 207/596 (34%), Positives = 320/596 (53%), Gaps = 62/596 (10%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV-RNEVNP 110
           +IK Y     + +AR LF+ MPERDV SW  M++GY    C + A +VF  M  +N+V+ 
Sbjct: 132 MIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSW 191

Query: 111 NAF-----TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           NA        S + +AC   KS  N ALV        L G    +  +++          
Sbjct: 192 NALLSAYVQNSKMEEACMLFKSRENWALVSWNC----LLGGFVKKKKIVE---------- 237

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGV--------------- 210
            AR  F+ M  ++ VSW T+ITGYA SG       +F E  ++ V               
Sbjct: 238 -ARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRM 296

Query: 211 ------------EMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFG----SNLPVMNS 254
                       E N  S++  +      G+V   ++  A   K  F      N+   N+
Sbjct: 297 VEEARELFDKMPERNEVSWNAML-----AGYVQGERMEMA---KELFDVMPCRNVSTWNT 348

Query: 255 ILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPN 313
           ++  Y +   +S+A   FD+M ++D ++W  +IAGY +SG S E L +F +M+ E    N
Sbjct: 349 MITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLN 408

Query: 314 CFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFS 373
             +F+S ++ CA + AL  G+Q+H  +V+ G +    + NAL+ MY KCG+I ++  +F 
Sbjct: 409 RSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFK 468

Query: 374 EMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDE 433
           EM+ +D+V+W +M+ GY  HG G+ A+  F+ M + G++PD    +AVL+ACSH GLVD+
Sbjct: 469 EMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDK 528

Query: 434 GLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGAC 492
           G +YF +M  DY V PN + Y C+VDLLGRAG +++A+ L+K+MPF+PD ++WG LLGA 
Sbjct: 529 GRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGAS 588

Query: 493 KEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVG 552
           + H    L + AA ++  ++P   G Y++LSN+YA+ G+W +  K R  MR  G KK  G
Sbjct: 589 RVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPG 648

Query: 553 MSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
            SWIE+++K   F   D+       ++  LE L   M +  Y      ++HD+E E
Sbjct: 649 YSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEE 704



 Score = 39.7 bits (91), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 15/149 (10%)

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           D ++   N  I  Y + G  +++ ++F  M     V++  M+ GY  +G  + A +LFDE
Sbjct: 61  DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDE 120

Query: 406 MVKSGVRPDR-IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA- 463
           M      P+R +V   V+      G V       K+   + + P +++      L G A 
Sbjct: 121 M------PERDLVSWNVMI----KGYV-RNRNLGKARELFEIMPERDVCSWNTMLSGYAQ 169

Query: 464 -GRVKEAYELIKSMPFKPDESVWGPLLGA 491
            G V +A  +   MP K D S W  LL A
Sbjct: 170 NGCVDDARSVFDRMPEKNDVS-WNALLSA 197


>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
 gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 698

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 206/567 (36%), Positives = 317/567 (55%), Gaps = 9/567 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + LA +LI  Y     +  A  LF  MP R+ VSWT +++G +    H  A   F  M R
Sbjct: 56  TFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRR 115

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             V P  F LSS  +A   + +    A +H + ++ G +  ++V ++L D+Y+ C +  +
Sbjct: 116 AGVAPTRFALSSAARAAAALGAPLPGAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSE 175

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG-VEMNPYSFSIAVRAC 224
             R VF+ M  K+ V+WT +I GYA +G+    +  F++M  EG V  + + F   + A 
Sbjct: 176 ACR-VFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSAS 234

Query: 225 A--STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR-FDCLSDANQYFDEMTEKDLI 281
                GW+S  K IH  V K GF   + V N+++DMY +  D  S +     +    +++
Sbjct: 235 GGLKDGWLS--KSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVV 292

Query: 282 TWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           +  ++I GY E     E L ++ +++ +   PN FTF+S+I  CA  A L  G Q+HA +
Sbjct: 293 SGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQV 352

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           ++  L  +  + + L+DMY KCG IS S ++F+E+  R  + W +++  +  HGHG+EAI
Sbjct: 353 IKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAI 412

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDL 459
           + FD M+ SG+RP+ I F+++LTACSHAGLVDEGLKYF SM + + + P +E Y C++D 
Sbjct: 413 QAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDT 472

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
            GRAGR+ EAY+ I  MP KP+   W  LLGAC+      LG++AA  ++ L+P   G +
Sbjct: 473 YGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEPGNTGIH 532

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVY 579
           + LS IYA+ G+WE+    RK+MR    KK  G SW++   K   F + D      + +Y
Sbjct: 533 VSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQKDIY 592

Query: 580 GVLEMLIRHMNETAYEPDIDCLIHDLE 606
             LE L   + E  Y PD   L  +LE
Sbjct: 593 EKLEELTTRIKEEGYIPDTSFLPCNLE 619



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 138/264 (52%), Gaps = 11/264 (4%)

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVM-NSILDMYCRFDCLSDANQYFDEMTEKD 279
           +++C   G +  G+L+HA ++  G  +    + N ++ MY     L+ A + F  M  ++
Sbjct: 27  LQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRN 86

Query: 280 LITWNTIIAGYEKS-GSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
            ++W T+++G  ++   ++ L  F+ M+    +P  F  +S   A A L A   G Q+H 
Sbjct: 87  AVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPGAQLHC 146

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
             VR G D  L +A+ L DMY+KCG +S++ ++F +M  +D V WT+M+ GY  +G  + 
Sbjct: 147 VGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEA 206

Query: 399 AIELFDEMVKSG-VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE----IY 453
           A+  F +M + G V  D+ VF +VL+A    GL D  L   KS++        E    + 
Sbjct: 207 AVLSFRDMKREGLVGADQHVFCSVLSAS--GGLKDGWLS--KSIHCCVTKAGFELEVAVR 262

Query: 454 GCVVDLLGRAGRVKEAYELIKSMP 477
             ++D+  ++  V+ A  ++K  P
Sbjct: 263 NALIDMYAKSMDVESASRVLKIDP 286


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 184/506 (36%), Positives = 297/506 (58%), Gaps = 12/506 (2%)

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD-- 165
           ++P+ F   S L  C+ +  +     VH      G+   + V N L+     C    D  
Sbjct: 1   MDPDFFI--STLFKCRNIFQIKQ---VHAQVTTTGIIHDLIVANKLL---YMCAKHKDLV 52

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A L+FN M+ ++ VSW+ +I G+  +G+       F+E++  G + + +S    ++AC 
Sbjct: 53  TAHLLFNKMEERDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACR 112

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
            T  +  G+LIH+ V+K+G   +  V ++++DMY +   + +A Q FD M +KDL+T   
Sbjct: 113 DTMGLIMGRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTV 172

Query: 286 IIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +IAGY + G  +E   +F +M+ + F P+     +I+ ACA L A++  + VH  +  R 
Sbjct: 173 MIAGYAECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARR 232

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
              ++ L  A+IDMYAKCG+I  S++IF  M  +++++W++M+  YG HG G+EA+ELF 
Sbjct: 233 YSLDVELGTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFH 292

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRA 463
            M+ SG+ P+RI F+++L ACSHAGLVD+GL+ F  M+  Y V P+ + Y C+VDLLGRA
Sbjct: 293 MMLNSGIIPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRA 352

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           GR+ +A  LI++M  + DE +W   LGAC+ HR  +L + AA  +L L+    G YI+LS
Sbjct: 353 GRLDQALRLIENMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLS 412

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           NIYA  G+W++ AK R +M     KK  G +WIEV + +  F A D     +  +Y +L+
Sbjct: 413 NIYANAGRWKDVAKIRNLMAKRRLKKIPGYTWIEVDNIIYRFGAGDNSHLRSNEIYEMLK 472

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGET 609
            L + +    Y PD + ++HD++ E 
Sbjct: 473 SLSQKLESAGYVPDTNSVLHDVDEEV 498



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 104/381 (27%), Positives = 187/381 (49%), Gaps = 13/381 (3%)

Query: 10  AATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLF 69
           +  F C  I  I KQ    V  + I  D         I+A  L+        +  A  LF
Sbjct: 8   STLFKCRNIFQI-KQVHAQVTTTGIIHDL--------IVANKLLYMCAKHKDLVTAHLLF 58

Query: 70  DEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLS 129
           ++M ERD VSW+VMI G+     + + +  F E++R    P+ F+L  V+KAC+    L 
Sbjct: 59  NKMEERDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLI 118

Query: 130 NAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGY 189
              L+H   +K GL    +V ++L+D+YA C + +DNA+ +F+ M  K+ V+ T +I GY
Sbjct: 119 MGRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGM-IDNAKQLFDRMPKKDLVTRTVMIAGY 177

Query: 190 AHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNL 249
           A  G       +F +M  +G   +  +    V ACA  G ++  +L+H  V    +  ++
Sbjct: 178 AECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDV 237

Query: 250 PVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSE 308
            +  +++DMY +   +  + + FD M +K++I+W+ +I  Y   G   E L +F  M + 
Sbjct: 238 ELGTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNS 297

Query: 309 RFSPNCFTFTSIIAACATLAALSCGQQVHAGI-VRRGLDGNLALANALIDMYAKCGNISD 367
              PN  TF S++ AC+    +  G Q+ + + V  G+  ++     ++D+  + G +  
Sbjct: 298 GIIPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQ 357

Query: 368 SQKIFSEMS-DRDLVTWTSMM 387
           + ++   M  ++D   W + +
Sbjct: 358 ALRLIENMEVEKDEGIWCAFL 378


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 193/578 (33%), Positives = 318/578 (55%), Gaps = 34/578 (5%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           A ++F+ + E + + W  MI G+   +    + T++V MV   + PN++T   +LK+C  
Sbjct: 17  ATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAK 76

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA-----------------------TCC 161
            K+ +    +HG  +K G +  +YV  SL+ +Y                        T  
Sbjct: 77  SKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTAL 136

Query: 162 IS-------MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP 214
           I+       + +A+ +F+++  K+ VSW  +I+GYA +G     L +F+EM+   V  + 
Sbjct: 137 ITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDE 196

Query: 215 YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE 274
            ++   + ACA +G +  G+ +H+ V  HGF SNL ++N+++D+Y +   +  A   F  
Sbjct: 197 STYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQG 256

Query: 275 MTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG 333
           ++ KD+I+WNT+I GY       E L +F +M     +PN  T  S++ ACA L A+  G
Sbjct: 257 LSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIG 316

Query: 334 QQVHAGIVRR--GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG 391
           + +H  I +R  G+    +L  +LIDMYAKCG+I  + ++F+ M  + L +W +M+ G+ 
Sbjct: 317 RWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFA 376

Query: 392 AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNK 450
            HG    + +LF  M K G+ PD I F+ +L+ACSH+G++D G   F+SM  DY + P  
Sbjct: 377 MHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKL 436

Query: 451 EIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD 510
           E YGC++DLLG +G  KEA E+I +M  +PD  +W  LL ACK H    L +  A  ++ 
Sbjct: 437 EHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQNLIK 496

Query: 511 LKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDK 570
           ++P    +YI+LSNIYA+ G+WE+ A+ R ++ G   KK  G S IEV   V  F+  DK
Sbjct: 497 IEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDSVVFEFVVGDK 556

Query: 571 MGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
                + +YG+LE +   + E  + PD   ++ ++E E
Sbjct: 557 FHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEE 594



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 107/364 (29%), Positives = 183/364 (50%), Gaps = 6/364 (1%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T LI  Y   G I  A+ LFDE+P +DVVSW  MI+GY    C+ +A  +F EM++  V 
Sbjct: 134 TALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVR 193

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P+  T  +VL AC    S+     VH      G + ++ + N+L+D+Y+ C   ++ A  
Sbjct: 194 PDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCG-EVETACG 252

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           +F  + +K+ +SW TLI GY H       L +F+EML  G   N  +    + ACA  G 
Sbjct: 253 LFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGA 312

Query: 230 VSFGKLIHAAVIKH--GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
           +  G+ IH  + K   G  +   +  S++DMY +   +  A+Q F+ M  K L +WN +I
Sbjct: 313 IDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMI 372

Query: 288 AGYEKSGSSEC-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-GL 345
            G+   G ++   ++FS+M+     P+  TF  +++AC+    L  G+ +   + +   +
Sbjct: 373 FGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKM 432

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEAIELFD 404
              L     +ID+    G   +++++ + M  + D V W S++     HG+ + A     
Sbjct: 433 TPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQ 492

Query: 405 EMVK 408
            ++K
Sbjct: 493 NLIK 496



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 133/263 (50%), Gaps = 33/263 (12%)

Query: 261 RFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTS 319
            FD L  A   F+ + E + + WNT+I G+  S      L ++  M S    PN +TF  
Sbjct: 10  HFDGLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPF 69

Query: 320 IIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDM--------------------- 358
           ++ +CA     + GQQ+H  +++ G D +L +  +LI M                     
Sbjct: 70  LLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRD 129

Query: 359 ----------YAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
                     YA  G+I  +QK+F E+  +D+V+W +M+ GY   G  KEA+ELF+EM+K
Sbjct: 130 VVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMK 189

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKE 468
             VRPD   ++ VL+AC+H+G ++ G +    ++D+  + N +I   ++DL  + G V+ 
Sbjct: 190 MNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVET 249

Query: 469 AYELIKSMPFKPDESVWGPLLGA 491
           A  L + + +K D   W  L+G 
Sbjct: 250 ACGLFQGLSYK-DVISWNTLIGG 271


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 197/566 (34%), Positives = 316/566 (55%), Gaps = 13/566 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           ++  L+  Y   G I++A  +F  M  RD +SW  +I           A   +  M +N 
Sbjct: 420 VSNGLVNMYAKCGAIDKACRVFQLMEARDRISWNTIITALDQNGYCEAAMMNYCLMRQNS 479

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + P+ F   S L +C G+  L+    +H  A+K GL     V N+L+ +Y  C   M   
Sbjct: 480 IGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGLYLDTSVSNALVKMYGECG-RMSEC 538

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYG-GLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
             +FN M   + VSW +++   A S       + VF  M+  G+  N  +F   + A   
Sbjct: 539 WEIFNSMSAHDVVSWNSIMGVMASSQAPITESVQVFSNMMKSGLVPNKVTFVNFLAALTP 598

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLITWNT 285
              +  GK IH+ ++KHG   +  V N+++  Y +   +    + F  M+  +D I+WN+
Sbjct: 599 LSVLELGKQIHSVMLKHGVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSGRRDAISWNS 658

Query: 286 IIAGYEKSG----SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           +I+GY  +G    + +C+ +   M SE+   +C TF+ ++ ACA++AAL  G ++HA  +
Sbjct: 659 MISGYIYNGHLQEAMDCVCLM--MHSEQMMDHC-TFSIVLNACASVAALERGMEMHAFGL 715

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           R  L+ ++ + +AL+DMY+KCG I  + K+F  MS ++  +W SM+ GY  HG G++A+E
Sbjct: 716 RSHLESDVVVESALVDMYSKCGRIDYASKVFHSMSQKNEFSWNSMISGYARHGLGRKALE 775

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461
           +F+EM +SG  PD + F++VL+ACSHAGLV+ GL YF+ M DY + P  E Y CV+DLLG
Sbjct: 776 IFEEMQESGESPDHVTFVSVLSACSHAGLVERGLDYFELMEDYGILPRIEHYSCVIDLLG 835

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKE--HRLP-NLGKLAALRVLDLKPNMMGT 518
           RAG + +  E +K MP KP+  +W  +L AC++  HR   +LG  A+  +L+L+P     
Sbjct: 836 RAGELDKIQEYMKRMPMKPNTLIWRTVLVACQQSKHRAKIDLGTEASRMLLELEPQNPVN 895

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
           Y++ S  +AA G+WE+ AK R  M+G   KKE G SW+ + D V  FIA D+   +T+ +
Sbjct: 896 YVLSSKFHAAIGRWEDTAKARAAMKGAAVKKEAGRSWVTLTDGVHTFIAGDRSHPNTKEI 955

Query: 579 YGVLEMLIRHMNETAYEPDIDCLIHD 604
           Y  L  LI+ +    Y P  + ++HD
Sbjct: 956 YEKLNFLIQKIRNAGYVPLTEYVLHD 981



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 124/468 (26%), Positives = 231/468 (49%), Gaps = 18/468 (3%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            LA +L+ SY     ++ AR +FD MP R+ VSWT +I+G+        A+ +F  M+R 
Sbjct: 101 FLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLSGLPEDAFPLFRAMLRE 160

Query: 107 E--VNPNAFTLSSVLKACK--GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
                P +FT  SVL+AC+  G   L  A  VHG+  K     +  V N+L+ +Y +C +
Sbjct: 161 GPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSNTTVCNALISMYGSCSV 220

Query: 163 SMDN-ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE--GVEMNP--YSF 217
                A+ VF+    ++ ++W  L++ YA  G+      +F+ M  +  G+E+ P  ++F
Sbjct: 221 GPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAMQYDDSGIELRPTEHTF 280

Query: 218 SIAVRACASTGWVSFGKL--IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM 275
              + A   +   S G L  +   V+K G  S+L V ++++  + R   L +A   +  +
Sbjct: 281 GSLITATYLSS-CSLGLLDQLFVRVLKSGCSSDLYVGSALVSAFARHGMLDEAKDIYLGL 339

Query: 276 TEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLA----ALS 331
            E++ +T N +IAG  K    E          +  + N  T+  +++A A  +     L 
Sbjct: 340 KERNAVTLNGLIAGLVKQQHGEAAAEIFMGARDSAAVNVDTYVVLLSAIAEFSTAEQGLR 399

Query: 332 CGQQVHAGIVRRG-LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY 390
            G++VHA ++R G +   +A++N L++MYAKCG I  + ++F  M  RD ++W +++   
Sbjct: 400 KGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRISWNTIITAL 459

Query: 391 GAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK 450
             +G+ + A+  +  M ++ + P     ++ L++C+  GL+  G +       + +  + 
Sbjct: 460 DQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGLYLDT 519

Query: 451 EIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLP 498
            +   +V + G  GR+ E +E+  SM    D   W  ++G     + P
Sbjct: 520 SVSNALVKMYGECGRMSECWEIFNSMS-AHDVVSWNSIMGVMASSQAP 566



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 144/335 (42%), Gaps = 36/335 (10%)

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS 295
           +H  V+K G   +L + N +++ Y +   L  A + FD M  ++ ++W  +I+G+  SG 
Sbjct: 87  LHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLSGL 146

Query: 296 SE-CLNMFSKMKSE--RFSPNCFTFTSIIAACATLAA--LSCGQQVHAGIVRRGLDGNLA 350
            E    +F  M  E     P  FTF S++ AC       L    QVH  + +     N  
Sbjct: 147 PEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSNTT 206

Query: 351 LANALIDMYAKC--GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV- 407
           + NALI MY  C  G    +Q++F     RDL+TW ++M  Y   G       LF  M  
Sbjct: 207 VCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAMQY 266

Query: 408 -KSGV--RPDRIVFMAVLTA-----CSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL 459
             SG+  RP    F +++TA     CS  GL+D+    F  +     + +  +   +V  
Sbjct: 267 DDSGIELRPTEHTFGSLITATYLSSCS-LGLLDQ---LFVRVLKSGCSSDLYVGSALVSA 322

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAA---LRVLDLKPNMM 516
             R G + EA ++   +  +   ++ G + G  K+      G+ AA   +   D     +
Sbjct: 323 FARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQH----GEAAAEIFMGARDSAAVNV 378

Query: 517 GTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEV 551
            TY++L             A+F    +G+   +EV
Sbjct: 379 DTYVVL---------LSAIAEFSTAEQGLRKGREV 404



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 57/98 (58%), Gaps = 2/98 (2%)

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
           + +H  +V+RGL  +L LAN L++ YAK   +  ++++F  M  R+ V+WT ++ G+   
Sbjct: 85  ESLHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLS 144

Query: 394 GHGKEAIELFDEMVKS--GVRPDRIVFMAVLTACSHAG 429
           G  ++A  LF  M++   G RP    F +VL AC  +G
Sbjct: 145 GLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSG 182



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 83/200 (41%), Gaps = 34/200 (17%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++ + L+  Y   G I+ A  +F  M +++  SW  MI+GY       +A  +F EM  +
Sbjct: 724 VVESALVDMYSKCGRIDYASKVFHSMSQKNEFSWNSMISGYARHGLGRKALEIFEEMQES 783

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA-------- 158
             +P+  T  SVL AC            H   ++ GL+   Y E  LM+ Y         
Sbjct: 784 GESPDHVTFVSVLSACS-----------HAGLVERGLD---YFE--LMEDYGILPRIEHY 827

Query: 159 TCCI-------SMDNARLVFNDMKWK-NDVSWTTLITGYAHSGNGYG-GLGV-FKEMLLE 208
           +C I        +D  +     M  K N + W T++     S +     LG     MLLE
Sbjct: 828 SCVIDLLGRAGELDKIQEYMKRMPMKPNTLIWRTVLVACQQSKHRAKIDLGTEASRMLLE 887

Query: 209 GVEMNPYSFSIAVRACASTG 228
               NP ++ ++ +  A+ G
Sbjct: 888 LEPQNPVNYVLSSKFHAAIG 907


>gi|147790104|emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
          Length = 825

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 192/559 (34%), Positives = 321/559 (57%), Gaps = 12/559 (2%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + ++ I  Y + G ++ AR +FD   ER+   W  MI GY   NC  +A  +FV+++ +
Sbjct: 256 FVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMES 315

Query: 107 E-VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           E    +  T  S L A   ++ L     +H   +K      + + N+++ +Y+ C  S+ 
Sbjct: 316 EQFXLDDVTFLSALTAISQLQWLDLGRQLHAYILKSSTILQVVILNAIIVMYSRCG-SIG 374

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            +  VF++M  ++ V+W T+++ +  +G    GL +  EM  +G  ++  + +  +   +
Sbjct: 375 TSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQGFMVDSVTLTALLSLAS 434

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNS-ILDMYCRFDCLSDANQYFDEMT--EKDLIT 282
           +      GK  HA +I+HG       M+  ++DMY +   ++ A Q F++ +  ++D  T
Sbjct: 435 NLRSQEIGKQAHAYLIRHGI--QFEGMDGYLIDMYAKSGLITTAQQLFEKNSXYDRDEAT 492

Query: 283 WNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           WN +IAGY ++G S E   +F KM  +   PN  T  SI+ AC  +  +  G+Q+H   +
Sbjct: 493 WNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAI 552

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           R  L+ N+ +  AL+DMY+K G I+ ++ +F+E  +++ VT+T+M++ YG HG G+ A+ 
Sbjct: 553 RCFLNQNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMILSYGQHGMGERALS 612

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLL 460
           LF  M+ SG++PD + F+A+L+ACS+AGLVDEGL+ F+SM  +Y + P+ E Y CV D+L
Sbjct: 613 LFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSSEHYCCVADML 672

Query: 461 GRAGRVKEAYELIKSMPFKPDE-SVWGPLLGACKEHRLPNLGKLAALRVLDLKPN--MMG 517
           GR GRV EAYE +K +  + +   +WG LLGAC+ H    LGK+ A ++L+++    + G
Sbjct: 673 GRVGRVXEAYEFVKGLGEEGNTFRIWGSLLGACRIHGEFELGKVVANKLLEMEKGSXLTG 732

Query: 518 TYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQY 577
            +++LSNIYAAEG W+   + RK MR  G  KE G SW+EV   V  F++ D        
Sbjct: 733 YHVLLSNIYAAEGNWDNVDRVRKEMRQKGLMKEAGCSWVEVAGHVNCFMSRDHKHPQCAE 792

Query: 578 VYGVLEMLIRHMNETAYEP 596
           +Y +LE L   M +  Y+P
Sbjct: 793 IYQMLEKLAMEMKDAGYKP 811



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 139/499 (27%), Positives = 239/499 (47%), Gaps = 51/499 (10%)

Query: 59  EGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP----NAFT 114
           +G   +A  LFD +P    V W  +I G   F C+N      +   R   +P    +++T
Sbjct: 50  QGHPHQALHLFDSIPRPTTVLWNTIIIG---FICNNMPIDALLFYARMRASPSPKFDSYT 106

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM---------- 164
            SS LKAC   +SL     +H   ++     S  V NSL+++Y+TC   +          
Sbjct: 107 FSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFN 166

Query: 165 --DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
             D  R VF+ M+ +N V+W T+I+ Y  +        +F+ M+  G+   P SF     
Sbjct: 167 NCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFP 226

Query: 223 ACASTGWVSFGKLIHAAVIKHG--FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           A           +++  V+K G  +  +  V++S + MY    C+  A + FD   E++ 
Sbjct: 227 AVWRMNDYDNANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNT 286

Query: 281 ITWNTIIAGYEKSGSS-ECLNMFSK-MKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
             WNT+I GY ++    E +++F + M+SE+F  +  TF S + A + L  L  G+Q+HA
Sbjct: 287 EVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHA 346

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
            I++      + + NA+I MY++CG+I  S K+FS M +RD+VTW +M+  +  +G   E
Sbjct: 347 YILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDE 406

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACS-----------HAGLVDEGLKYFKSMNDYNVN 447
            + L  EM K G   D +   A+L+  S           HA L+  G++ F+ M+ Y   
Sbjct: 407 GLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQ-FEGMDGY--- 462

Query: 448 PNKEIYGCVVDLLGRAGRVKEAYELI-KSMPFKPDESVWGPLLGACKEHRLPNLGKLAAL 506
                   ++D+  ++G +  A +L  K+  +  DE+ W  ++    ++ L   G  A  
Sbjct: 463 --------LIDMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEG-FAVF 513

Query: 507 RVL---DLKPNMMGTYIIL 522
           R +   +++PN +    IL
Sbjct: 514 RKMIEQNVRPNAVTLASIL 532



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 124/478 (25%), Positives = 237/478 (49%), Gaps = 29/478 (6%)

Query: 5   RLLSYAATFHCHKIPP------IIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFD 58
           R L      HCH +        I+  SL ++  + +   P L              + +D
Sbjct: 118 RSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYL-------------GTAYD 164

Query: 59  EGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSV 118
               +  R +FD M +R+VV+W  MI+ Y       +A+ +F  M+R  + P   +  +V
Sbjct: 165 FNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNV 224

Query: 119 LKACKGMKSLSNAALVHGMAIKEGLE--GSIYVENSLMDVYATC-CISMDNARLVFNDMK 175
             A   M    NA +++G+ +K G +     +V +S + +YA   C+  D AR +F+   
Sbjct: 225 FPAVWRMNDYDNANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCV--DFAREIFDCCL 282

Query: 176 WKNDVSWTTLITGYAHSGNGYGGLGVFKEML-LEGVEMNPYSFSIAVRACASTGWVSFGK 234
            +N   W T+I GY  +      + +F +++  E   ++  +F  A+ A +   W+  G+
Sbjct: 283 ERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGR 342

Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG 294
            +HA ++K      + ++N+I+ MY R   +  + + F  M E+D++TWNT+++ + ++G
Sbjct: 343 QLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNG 402

Query: 295 -SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353
              E L +  +M+ + F  +  T T++++  + L +   G+Q HA ++R G+     +  
Sbjct: 403 LDDEGLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFE-GMDG 461

Query: 354 ALIDMYAKCGNISDSQKIFSEMS--DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411
            LIDMYAK G I+ +Q++F + S  DRD  TW +M+ GY  +G  +E   +F +M++  V
Sbjct: 462 YLIDMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNV 521

Query: 412 RPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
           RP+ +   ++L AC+  G +  G +         +N N  +   ++D+  ++G +  A
Sbjct: 522 RPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNQNVFVGTALLDMYSKSGAITYA 579


>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
 gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 204/592 (34%), Positives = 334/592 (56%), Gaps = 16/592 (2%)

Query: 17  KIPPIIKQ--SLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPE 74
           K+  +IKQ  S   +K+   Q     IPK P+ L + +I    D   +  A  +F+++ +
Sbjct: 35  KLLSLIKQCKSKNLLKQIHAQMLINSIPK-PNFLLSKII----DLKDLAYASLVFNQLTK 89

Query: 75  RDVVSWTVMIAGY-TSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAAL 133
            ++ ++ VM+ G  T++  ++    ++ ++    +  N FT   +  AC  ++ L +  +
Sbjct: 90  PNIYAFNVMLRGLATTWKKYDFCVELYYKLKSLGLKANNFTYPFLFIACGNVRGLVHGKI 149

Query: 134 VHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSG 193
            H +  K GL+G  YV +SL+ +YA C   M  AR VF++M  ++ VSW ++I+GY+  G
Sbjct: 150 GHCLVFKAGLDGDEYVNHSLITMYARCG-EMGFARKVFDEMGDRDLVSWNSMISGYSKMG 208

Query: 194 NGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMN 253
                +G+F EM  EG E +  +    + AC   G +  G+ +   V++     N  + +
Sbjct: 209 FTKEAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVNSYMGS 268

Query: 254 SILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSP 312
           +++DMY +   L  A + FD M  KD++TWN II GY ++G+S E + +F+ M+     P
Sbjct: 269 ALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMREAGPHP 328

Query: 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIF 372
           +  T   +++AC+T+ AL  G+ V      +GL  ++ +A+ALIDMYAKCG++ D+ ++F
Sbjct: 329 DRVTMIEVLSACSTIGALDLGKWVETHASEKGLQHDVYVASALIDMYAKCGSLDDAVRVF 388

Query: 373 SEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG--VRPDRIVFMAVLTACSHAGL 430
             M  ++ V+W +M+     HG  +EA+ LF  M K    V+P+ I F+ VL+AC HAGL
Sbjct: 389 ESMPHKNEVSWNAMISALAFHGQAQEALSLFRRMSKDNGTVQPNDITFIGVLSACVHAGL 448

Query: 431 VDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           VDEG + F+SMN  + + P  E Y C+VDL  RAG + EA++LIK MP KPDE V G LL
Sbjct: 449 VDEGRQLFESMNLSFGLVPKVEHYSCMVDLCARAGLLYEAWDLIKKMPGKPDEIVLGSLL 508

Query: 490 GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKK 549
           GAC+  R  ++G+      L+++ +  G Y+I S IYA   +W++ AK R +MR  G  K
Sbjct: 509 GACQRRRNADVGERVIQLFLEMELSNSGNYVISSKIYANMRRWDDSAKMRVLMRQCGVSK 568

Query: 550 EVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCL 601
             G SWI++   V  F A D + +H+  +Y   ++L   M    Y P+I C+
Sbjct: 569 TPGCSWIDIGAHVHEFHAGDSLHNHSMNIY---QLLNEEMKREGYIPNIGCI 617


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 184/554 (33%), Positives = 320/554 (57%), Gaps = 13/554 (2%)

Query: 67  TLFDEMPER-DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGM 125
           TLF+   ++ DV SW  +IA         +A   F  M +  + P   +    +KAC  +
Sbjct: 30  TLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSL 89

Query: 126 KSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTL 185
             + +    H  A   G +  I+V ++L+ +Y+TC   +++AR VF+++  +N VSWT++
Sbjct: 90  FDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCG-KLEDARKVFDEIPKRNIVSWTSM 148

Query: 186 ITGYAHSGNGYGGLGVFKEMLLE------GVEMNPYSFSIAVRACASTGWVSFGKLIHAA 239
           I GY  +GN    + +FK++L++       + ++       + AC+        + IH+ 
Sbjct: 149 IRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSF 208

Query: 240 VIKHGFGSNLPVMNSILDMYCRFD--CLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SS 296
           VIK GF   + V N++LD Y +     ++ A + FD++ +KD +++N+I++ Y +SG S+
Sbjct: 209 VIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSN 268

Query: 297 ECLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
           E   +F ++ K++  + N  T ++++ A +   AL  G+ +H  ++R GL+ ++ +  ++
Sbjct: 269 EAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSI 328

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           IDMY KCG +  ++K F  M ++++ +WT+M+ GYG HGH  +A+ELF  M+ SGVRP+ 
Sbjct: 329 IDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNY 388

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
           I F++VL ACSHAGL  EG ++F +M   + V P  E YGC+VDLLGRAG +++AY+LI+
Sbjct: 389 ITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQ 448

Query: 475 SMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEE 534
            M  KPD  +W  LL AC+ H+   L +++  R+ +L  +  G Y++LS+IYA  G+W++
Sbjct: 449 RMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKD 508

Query: 535 FAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAY 594
             + R IM+  G  K  G S +E+  +V  F+  D+     + +Y  L  L R + E  Y
Sbjct: 509 VERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGY 568

Query: 595 EPDIDCLIHDLEGE 608
             +   + HD++ E
Sbjct: 569 VSNTSSVCHDVDEE 582



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 182/357 (50%), Gaps = 11/357 (3%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +++ LI  Y   G +E+AR +FDE+P+R++VSWT MI GY        A ++F +++ +E
Sbjct: 113 VSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDE 172

Query: 108 VNP------NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
            +       ++  L SV+ AC  + +      +H   IK G +  + V N+L+D YA   
Sbjct: 173 NDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGG 232

Query: 162 I-SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG-VEMNPYSFSI 219
              +  AR +F+ +  K+ VS+ ++++ YA SG       VF+ ++    V  N  + S 
Sbjct: 233 EGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLST 292

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
            + A + +G +  GK IH  VI+ G   ++ V  SI+DMYC+   +  A + FD M  K+
Sbjct: 293 VLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKN 352

Query: 280 LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG-QQVH 337
           + +W  +IAGY   G +++ L +F  M      PN  TF S++AAC+       G +  +
Sbjct: 353 VRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFN 412

Query: 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAH 393
           A   R G++  L     ++D+  + G +  +  +   M  + D + W+S++     H
Sbjct: 413 AMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIH 469



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 42/76 (55%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I+ T++I  Y   G +E AR  FD M  ++V SWT MIAGY       +A  +F  M+ +
Sbjct: 323 IVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDS 382

Query: 107 EVNPNAFTLSSVLKAC 122
            V PN  T  SVL AC
Sbjct: 383 GVRPNYITFVSVLAAC 398


>gi|413933352|gb|AFW67903.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 788

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 201/627 (32%), Positives = 331/627 (52%), Gaps = 68/627 (10%)

Query: 27  QSVKKSSIQSDPPL---IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVM 83
           + VK   I S   L   +P+   +  T ++ +    G + +A  L++  P   V  +T M
Sbjct: 158 EHVKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFFTAM 217

Query: 84  IAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGL 143
           I+G+     H  A+TVF +M+   V PN  TL  V+KAC G      A  V G+A+K  L
Sbjct: 218 ISGFVRNELHKDAFTVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVKCNL 277

Query: 144 -EGSIYVENSL-------------------------------MDVYATCCISMDNARLVF 171
            E SI V NSL                               +DVYA     +D AR V 
Sbjct: 278 FEKSIEVHNSLITLYLRMGDAAAARRVFDDMEVRDVVSWTALLDVYADLG-DLDGARRVL 336

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           + M  +N+VSW TLI  +   G+    L ++ +ML +G   N   FS  + ACA+   + 
Sbjct: 337 DAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQDLR 396

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            G  IHA  +K G  +NL V +S++DMYC+    + A + F+ + EK+ + WN++I+GY 
Sbjct: 397 GGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYS 456

Query: 292 KSGS--------------------------------SECLNMFSKMKSERFSPNCFTFTS 319
            +G                                  + LN F  M +    P   T +S
Sbjct: 457 WNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEITLSS 516

Query: 320 IIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD 379
           ++ ACA L +L  G+ VHA IV+ G++ N+ +  AL DMYAK G++  S+++F +M +++
Sbjct: 517 VLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALCDMYAKSGDLDSSRRVFYQMPEKN 576

Query: 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439
            +TWT+M+ G   +G  +E+I LF++M+++G+ P+   F+A+L ACSH GLV++ + YF+
Sbjct: 577 NITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCGLVEQAIHYFE 636

Query: 440 SMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN 499
           +M  + + P  + Y C+VD+L RAG + EA EL+  +  + D S W  LL AC  +R   
Sbjct: 637 TMQAHGIPPKSKHYTCMVDVLARAGCLPEAEELLMKVSSELDTSSWSSLLSACSTYRNKE 696

Query: 500 LGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVR 559
           +G+ AA ++ +L+ +    Y++LSN+YA+ GKW++ A+ R +M+G   KK+ G SW+++R
Sbjct: 697 IGERAAKKLHELEKDNTAGYVLLSNMYASCGKWKDAAETRILMQGASLKKDAGCSWLQLR 756

Query: 560 DKVCGFIANDKMGSHTQYVYGVLEMLI 586
            +   F +  +    +  +Y +L++L+
Sbjct: 757 GQYHAFFSWKEKHPLSLEIYEILDLLM 783



 Score = 46.2 bits (108), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 78/192 (40%), Gaps = 39/192 (20%)

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL------------ 402
           ++  + K G+I+ ++++F  M ++ +V++T+M+      G  ++A+EL            
Sbjct: 155 MVSEHVKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFF 214

Query: 403 -------------------FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND 443
                              F +M+   VRP+ +  + V+ AC  AG  D  +        
Sbjct: 215 TAMISGFVRNELHKDAFTVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVK 274

Query: 444 YNV-NPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGK 502
            N+   + E++  ++ L  R G    A  +   M  + D   W  LL         +LG 
Sbjct: 275 CNLFEKSIEVHNSLITLYLRMGDAAAARRVFDDMEVR-DVVSWTALLDV-----YADLGD 328

Query: 503 L-AALRVLDLKP 513
           L  A RVLD  P
Sbjct: 329 LDGARRVLDAMP 340


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 183/577 (31%), Positives = 311/577 (53%), Gaps = 35/577 (6%)

Query: 62  IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121
           ++ A +LF  +P         ++  ++         ++++ + RN    + F+   +LKA
Sbjct: 65  LDYALSLFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKA 124

Query: 122 CKGMKSLSNAALVHGMAIKEGL-EGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDV 180
              + +L+    +HG+A K G      +++++L+ +YA C   MD AR +F+ M  ++ V
Sbjct: 125 VSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMD-ARFLFDKMSHRDVV 183

Query: 181 SWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAV 240
           +W  +I GY+ + +    L +++EM   G E +       + ACA  G +S+GK IH  +
Sbjct: 184 TWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFI 243

Query: 241 IKHGFGSNLPVMNSILDMYC-------------------------------RFDCLSDAN 269
             +GF     +  S+++MY                                +   + DA 
Sbjct: 244 KDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDAR 303

Query: 270 QYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLA 328
             FD M EKDL+ W+ +I+GY +S    E L +F++M+  R  P+  T  S+I+ACA + 
Sbjct: 304 FIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVG 363

Query: 329 ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMI 388
           AL   + +H    + G    L + NALIDMYAKCGN+  ++++F  M  +++++W+SM+ 
Sbjct: 364 ALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMIN 423

Query: 389 GYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVN 447
            +  HG    AI LF  M +  + P+ + F+ VL ACSHAGLV+EG K+F SM N++ ++
Sbjct: 424 AFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRIS 483

Query: 448 PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALR 507
           P +E YGC+VDL  RA  +++A ELI++MPF P+  +WG L+ AC+ H    LG+ AA R
Sbjct: 484 PQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEFAATR 543

Query: 508 VLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIA 567
           +L+L+P+  G  ++LSNIYA E +W++    RK+M+  G  KE   S IEV ++V  F+ 
Sbjct: 544 LLELEPDHDGALVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRIEVNNEVHVFMM 603

Query: 568 NDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHD 604
            D+    +  +Y  L+ ++  +    Y P    ++ D
Sbjct: 604 ADRYHKQSDEIYKKLDAVVSQLKLVGYTPSTSGILVD 640



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 113/424 (26%), Positives = 195/424 (45%), Gaps = 74/424 (17%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + + LI  Y   G I +AR LFD+M  RDVV+W +MI GY+    ++    ++ EM  +
Sbjct: 152 FIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTS 211

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC------ 160
              P+A  L +VL AC    +LS    +H      G     +++ SL+++YA C      
Sbjct: 212 GTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLA 271

Query: 161 ------------CIS------------MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGY 196
                        +S            + +AR +F+ M  K+ V W+ +I+GYA S    
Sbjct: 272 REVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPL 331

Query: 197 GGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSIL 256
             L +F EM    +  +  +    + ACA+ G +   K IH    K+GFG  LP+ N+++
Sbjct: 332 EALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALI 391

Query: 257 DMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCF 315
           DMY +   L  A + F+ M  K++I+W+++I  +   G ++  + +F +MK +   PN  
Sbjct: 392 DMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGV 451

Query: 316 TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEM 375
           TF  ++ AC+           HAG+V  G                        QK FS M
Sbjct: 452 TFIGVLYACS-----------HAGLVEEG------------------------QKFFSSM 476

Query: 376 SDRDLVT-----WTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
            +   ++     +  M+  Y    H ++A+EL + M      P+ I++ ++++AC + G 
Sbjct: 477 INEHRISPQREHYGCMVDLYCRANHLRKAMELIETM---PFPPNVIIWGSLMSACQNHGE 533

Query: 431 VDEG 434
           ++ G
Sbjct: 534 IELG 537



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 145/275 (52%), Gaps = 4/275 (1%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P    +++T ++  Y   G++++AR +FD M E+D+V W+ MI+GY       +A  +F
Sbjct: 278 LPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLF 337

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
            EM R  + P+  T+ SV+ AC  + +L  A  +H  A K G   ++ + N+L+D+YA C
Sbjct: 338 NEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKC 397

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
             ++  AR VF +M  KN +SW+++I  +A  G+    + +F  M  + +E N  +F   
Sbjct: 398 G-NLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGV 456

Query: 221 VRACASTGWVSFGKLIHAAVI-KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EK 278
           + AC+  G V  G+   +++I +H           ++D+YCR + L  A +  + M    
Sbjct: 457 LYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPP 516

Query: 279 DLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPN 313
           ++I W ++++  +  G  E L  F+  +     P+
Sbjct: 517 NVIIWGSLMSACQNHGEIE-LGEFAATRLLELEPD 550


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 199/584 (34%), Positives = 319/584 (54%), Gaps = 35/584 (5%)

Query: 59  EGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSV 118
           EGL   A ++F  + E +++ W  M  G+   +    A  ++V M+   + PN++T   V
Sbjct: 82  EGL-PYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFV 140

Query: 119 LKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA-------------------- 158
           LK+C   K+      +HG  +K G +  +YV  SL+ +Y                     
Sbjct: 141 LKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDV 200

Query: 159 ---TCCIS-------MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE 208
              T  I        ++NA+ +F+++  K+ VSW  +I+GYA +GN    L +FK+M+  
Sbjct: 201 VSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKT 260

Query: 209 GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDA 268
            V  +  +    V ACA +G +  G+ +H  +  HGFGSNL ++N+++D+Y +   L  A
Sbjct: 261 NVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETA 320

Query: 269 NQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATL 327
              F+ +  KD+I+WNT+I GY       E L +F +M     +PN  T  SI+ ACA L
Sbjct: 321 CGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHL 380

Query: 328 AALSCGQQVHAGIVRR--GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTS 385
            A+  G+ +H  I +R  G+    +L  +LIDMYAKCG+I  + ++F+ +  + L +W +
Sbjct: 381 GAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNA 440

Query: 386 MMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDY 444
           M+ G+  HG    + +LF  M K G++PD I F+ +L+ACSH+G++D G   F++M  DY
Sbjct: 441 MIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDY 500

Query: 445 NVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLA 504
            + P  E YGC++DLLG +G  KEA E+I  M  +PD  +W  LL ACK H    LG+  
Sbjct: 501 KMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESF 560

Query: 505 ALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCG 564
           A  ++ ++P   G+Y++LSNIYA+ G+W E AK R ++   G KK  G S IE+   V  
Sbjct: 561 AENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHE 620

Query: 565 FIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           FI  DK     + +YG+LE +   + +  + PD   ++ ++E E
Sbjct: 621 FIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEE 664



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 144/553 (26%), Positives = 250/553 (45%), Gaps = 59/553 (10%)

Query: 42  PKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFV 101
           P    +  T LIK Y   G IE A+ LFDE+P +DVVSW  MI+GY     + +A  +F 
Sbjct: 196 PHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFK 255

Query: 102 EMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
           +M++  V P+  T+ +V+ AC    S+     VH      G   ++ + N+L+D+Y+ C 
Sbjct: 256 DMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCG 315

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
             ++ A  +F  + +K+ +SW TLI GY H       L +F+EML  G   N  +    +
Sbjct: 316 -ELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSIL 374

Query: 222 RACASTGWVSFGKLIHAAVIKH--GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
            ACA  G +  G+ IH  + K   G  +   +  S++DMY +   +  A+Q F+ +  K 
Sbjct: 375 PACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKS 434

Query: 280 LITWNTIIAGYEKSGSSEC-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           L +WN +I G+   G ++   ++FS+M+     P+  TF  +++AC+    L  G+ +  
Sbjct: 435 LSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFR 494

Query: 339 GIVRR-GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHGHG 396
            + +   +   L     +ID+    G   +++++ + M    D V W S++     HG+ 
Sbjct: 495 TMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNV 554

Query: 397 KEAIELFDEMVK-SGVRPDRIVFMAVLTAC---------SHAGLVDEGLKYFKSMNDYNV 446
           +      + ++K     P   V ++ + A          + A L D+G+K     +   +
Sbjct: 555 ELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEI 614

Query: 447 NP--------------NKEIYGCVVD---LLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           +               N+EIYG + +   LL +AG V +  E+++ M     E  W    
Sbjct: 615 DSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEM-----EEEWKE-- 667

Query: 490 GACKEHRLPNLGKLA-ALRVLDLKPNMMGTYI--------------ILSNIYAAEGKWEE 534
           GA + H      KLA A  ++  KP    T +              ++S IY  E    +
Sbjct: 668 GALRHHS----EKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARD 723

Query: 535 FAKFRKIMRGMGS 547
             +F     G+ S
Sbjct: 724 RTRFHHFRDGVCS 736



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 148/294 (50%), Gaps = 38/294 (12%)

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYC----RFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           ++IHA +IK G  +    ++ +++ +C     F+ L  A   F  + E +L+ WNT+  G
Sbjct: 50  RIIHAQMIKIGLHNTNYALSKLIE-FCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRG 108

Query: 290 YEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           +  S      L ++  M S    PN +TF  ++ +CA   A   GQQ+H  +++ G D +
Sbjct: 109 HALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLD 168

Query: 349 LALANALIDMYAKCGNISD-------------------------------SQKIFSEMSD 377
           L +  +LI MY + G + D                               +QK+F E+  
Sbjct: 169 LYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPV 228

Query: 378 RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY 437
           +D+V+W +M+ GY   G+ KEA+ELF +M+K+ VRPD    + V++AC+ +G ++ G + 
Sbjct: 229 KDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQV 288

Query: 438 FKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
              ++D+    N +I   ++DL  + G ++ A  L + +P+K D   W  L+G 
Sbjct: 289 HLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYK-DVISWNTLIGG 341


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 185/565 (32%), Positives = 316/565 (55%), Gaps = 6/565 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM-V 104
           + L+ + +  Y   G ++    LFD+M +R++VSWT +I G+   +   +A + F +M +
Sbjct: 110 TFLSNHFLNLYSKCGELDYTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRI 169

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
             E+    F LSSVL+AC  + ++     VH + +K G    ++V ++L D+Y+ C   +
Sbjct: 170 EGEI-ATQFALSSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCG-EL 227

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
            +A   F +M  K+ V WT++I G+  +G+    L  + +M+ + V ++ +     + AC
Sbjct: 228 SDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSAC 287

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE-KDLITW 283
           ++    SFGK +HA ++K GF     + N++ DMY +   +  A+  F   ++   +++ 
Sbjct: 288 SALKASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASNVFQIHSDCISIVSL 347

Query: 284 NTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
             II GY E     + L+ F  ++     PN FTFTS+I ACA  A L  G Q+H  +V+
Sbjct: 348 TAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVK 407

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
                +  +++ L+DMY KCG    S ++F E+ + D + W +++  +  HG G+ AIE 
Sbjct: 408 FNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIET 467

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLG 461
           F+ M+  G++P+ + F+ +L  CSHAG+V++GL YF SM   Y V P +E Y CV+DLLG
Sbjct: 468 FNGMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEKIYGVVPKEEHYSCVIDLLG 527

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           RAG++KEA + I +MPF+P+   W   LGACK H      K AA +++ L+P   G +++
Sbjct: 528 RAGKLKEAEDFINNMPFEPNVFGWCSFLGACKIHGDMERAKFAADKLMKLEPENSGAHVL 587

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGV 581
           LSNIYA E +WE+    RK+++     K  G SW+++R+K   F   D      + +Y  
Sbjct: 588 LSNIYAKEKQWEDVQSLRKMIKDGNMNKLPGYSWVDIRNKTHVFGVEDWSHPQKKEIYEK 647

Query: 582 LEMLIRHMNETAYEPDIDCLIHDLE 606
           L+ L+  +    Y P  + ++ D++
Sbjct: 648 LDNLLDQIKRIGYVPQTESVLIDMD 672



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 126/229 (55%), Gaps = 12/229 (5%)

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           ++  A T  ++ GK +HA +I+ G   N  + N  L++Y +   L    + FD+M+++++
Sbjct: 82  IQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLFDKMSQRNM 141

Query: 281 ITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           ++W +II G+   S   E L+ F +M+ E      F  +S++ AC +L A+  G QVH  
Sbjct: 142 VSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQFGTQVHCL 201

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
           +V+ G    L + + L DMY+KCG +SD+ K F EM  +D V WTSM+ G+  +G  K+A
Sbjct: 202 VVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKA 261

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACS-----------HAGLVDEGLKY 437
           +  + +MV   V  D+ V  + L+ACS           HA ++  G +Y
Sbjct: 262 LTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEY 310



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 88/174 (50%), Gaps = 1/174 (0%)

Query: 316 TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEM 375
           T   +I   A    L+ G+Q+HA ++R G   N  L+N  +++Y+KCG +  + K+F +M
Sbjct: 77  TVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLFDKM 136

Query: 376 SDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGL 435
           S R++V+WTS++ G+  +   +EA+  F +M   G    +    +VL AC+  G +  G 
Sbjct: 137 SQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQFGT 196

Query: 436 KYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           +    +          +   + D+  + G + +A +  + MP K D  +W  ++
Sbjct: 197 QVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCK-DAVLWTSMI 249



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 7/106 (6%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           K    +++ L+  Y   GL + +  LFDE+   D ++W  ++  ++       A   F  
Sbjct: 411 KRDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIETFNG 470

Query: 103 MVRNEVNPNAFTLSSVLKACK-------GMKSLSNAALVHGMAIKE 141
           M+   + PNA T  ++LK C        G+   S+   ++G+  KE
Sbjct: 471 MIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEKIYGVVPKE 516


>gi|302753382|ref|XP_002960115.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
 gi|300171054|gb|EFJ37654.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
          Length = 653

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 189/573 (32%), Positives = 308/573 (53%), Gaps = 32/573 (5%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           AR +FD + +R+  SW++++  Y     + +A  V+ EMVR E++ +A+TLSSVL AC  
Sbjct: 1   ARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVREEISIDAYTLSSVLAACTK 60

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC------------------------ 160
           +  +    +V   A + G E  + V  SL+ ++A C                        
Sbjct: 61  LLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVTA 120

Query: 161 -----CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPY 215
                C S+ +++ +F  M  K+ VSW  +I  Y   G+      +F  M   G   + Y
Sbjct: 121 MIGAYCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIY 180

Query: 216 SFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM 275
           +FS  + ACAS   +  G+++H  +   GF  +  + N+++ MY R   L  A +YF  +
Sbjct: 181 TFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMYTRCGSLESARRYFYSI 240

Query: 276 TEKDLITWNTIIAGYEK-SGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334
            +K+L  WNT++A Y +     + L ++  M  E F+P+ FTF+S++ +CA+L AL  G+
Sbjct: 241 EKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGK 300

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
            +H      G + ++ L  AL++MYAKCG+++D++K F  +S++D+V+W++M+     HG
Sbjct: 301 FIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQHG 360

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIY 453
           H +EA+EL   M   G+  + +   +VL ACSH G + EG+ YF  ++ D+ +  ++E  
Sbjct: 361 HAEEALELSHLMNLQGIAQNEVTASSVLHACSHGGRLYEGIDYFMGLSQDFGIERDEENT 420

Query: 454 GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513
              +DLLGRAG +KEA  ++ +MPFK        LLG CK H     GK    R++ L+P
Sbjct: 421 VGFIDLLGRAGWLKEAEHVLHTMPFKVSFVALVTLLGGCKVHGDVRRGKAFTKRIVALEP 480

Query: 514 NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGS 573
              G+Y++L+N+YAA G+W++ AK R+ MR  G K++ G S IE RDK+  F   D    
Sbjct: 481 ENPGSYVLLNNMYAAAGRWDDVAKLRRYMRKKGVKRQTGCSSIEYRDKIYEFSVGDTSNP 540

Query: 574 HTQYVYGVLEMLIRHMN-ETAYEPDIDCLIHDL 605
               +   LE L   M  E  Y PD   + HD+
Sbjct: 541 RNLEIRAELERLYSRMKEEEGYVPDTRDVFHDV 573



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 182/351 (51%), Gaps = 6/351 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I  T +I +Y   G ++++++LF  M  +DVVSW  MIA YT +     A+++F  M   
Sbjct: 116 ISVTAMIGAYC--GSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTL 173

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
              P+ +T SS+L AC   K L +  ++H      G +    ++N+L+ +Y T C S+++
Sbjct: 174 GHTPDIYTFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMY-TRCGSLES 232

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR  F  ++ K   +W T++  YA    G   L ++K MLLEG   + ++FS  V +CAS
Sbjct: 233 ARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCAS 292

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G +  GK IH      GF  ++ +  ++++MY +   L+DA + FD ++ KD+++W+ +
Sbjct: 293 LGALREGKFIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGISNKDVVSWSAM 352

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-G 344
           IA   + G + E L +   M  +  + N  T +S++ AC+    L  G     G+ +  G
Sbjct: 353 IAASAQHGHAEEALELSHLMNLQGIAQNEVTASSVLHACSHGGRLYEGIDYFMGLSQDFG 412

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHG 394
           ++ +       ID+  + G + +++ +   M  +   V   +++ G   HG
Sbjct: 413 IERDEENTVGFIDLLGRAGWLKEAEHVLHTMPFKVSFVALVTLLGGCKVHG 463


>gi|413944103|gb|AFW76752.1| hypothetical protein ZEAMMB73_846363 [Zea mays]
          Length = 562

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 177/512 (34%), Positives = 305/512 (59%), Gaps = 4/512 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L T L+  Y   G +  AR +FD MP R VVSWT M++GY   +   +A  +F  M+R+ 
Sbjct: 50  LNTKLVIFYSHFGDVAAARRVFDGMPHRSVVSWTAMVSGYAKNSRPQEALDLFAFMLRSG 109

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
             PN FT  S ++AC G +   +   +H  A K    G ++V+++LMD++  C  S+ +A
Sbjct: 110 ARPNQFTFGSAVRACTGARCARSGEQIHACAAKGRFAGDMFVQSALMDMHLRCG-SVGDA 168

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R +F +M+ K+ VSW +L+ G+    +    LG+F  ML +G+  + ++F  A++AC + 
Sbjct: 169 RRLFAEMERKDLVSWNSLMRGFVEREHCNDALGLFDSMLRDGMLPDHFTFGSALKACGAI 228

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +   +LIHA +IK G+      + S++D Y +   LS A   +D M E DL++   +I
Sbjct: 229 SVLFNVELIHACIIKLGYWDENVAIASLIDSYAKCRSLSSARVIYDSMCEPDLVSSTALI 288

Query: 288 AGY--EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           +GY  +++ S + + +F K+  +    +    +S++  CA +A++  G Q+HA + ++  
Sbjct: 289 SGYSMDRNYSDDAMKLFCKIHRKGLRIDAILLSSLLGVCANVASIKFGTQIHAYMHKKQP 348

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
            G+LAL NAL+DMYAK G   DS++ F EM +R++++WTS++     HG G++A+ LF  
Sbjct: 349 MGDLALDNALVDMYAKSGEFLDSRRAFDEMPNRNVISWTSLITSCAQHGFGEDAVTLFAR 408

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS-MNDYNVNPNKEIYGCVVDLLGRAG 464
           M + GV+P+ + F+++L+ACSH+G++++G++YF S M+ Y ++P  + Y   VDLL R G
Sbjct: 409 MEEDGVKPNDVTFLSLLSACSHSGMMNKGMEYFTSMMSKYGIDPRFKHYSSAVDLLARGG 468

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           ++++A+ L+++   +   S++G +LGACK H    LG+ AA  +L + P     Y +L+N
Sbjct: 469 QLEDAWMLVQNTNTECKSSMYGTMLGACKVHGNMPLGETAAKNLLSIDPESSVNYAVLAN 528

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWI 556
           +YA    WE+  + RK++      KE G S I
Sbjct: 529 MYAESHLWEDAQRTRKLLVETSKGKEAGFSVI 560



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 173/328 (52%), Gaps = 4/328 (1%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   + + L+  +   G + +AR LF EM  +D+VSW  ++ G+      N A  +F  M
Sbjct: 147 GDMFVQSALMDMHLRCGSVGDARRLFAEMERKDLVSWNSLMRGFVEREHCNDALGLFDSM 206

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           +R+ + P+ FT  S LKAC  +  L N  L+H   IK G         SL+D YA  C S
Sbjct: 207 LRDGMLPDHFTFGSALKACGAISVLFNVELIHACIIKLGYWDENVAIASLIDSYAK-CRS 265

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGN-GYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
           + +AR++++ M   + VS T LI+GY+   N     + +F ++  +G+ ++    S  + 
Sbjct: 266 LSSARVIYDSMCEPDLVSSTALISGYSMDRNYSDDAMKLFCKIHRKGLRIDAILLSSLLG 325

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
            CA+   + FG  IHA + K     +L + N+++DMY +     D+ + FDEM  +++I+
Sbjct: 326 VCANVASIKFGTQIHAYMHKKQPMGDLALDNALVDMYAKSGEFLDSRRAFDEMPNRNVIS 385

Query: 283 WNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           W ++I    + G  E  + +F++M+ +   PN  TF S+++AC+    ++ G +    ++
Sbjct: 386 WTSLITSCAQHGFGEDAVTLFARMEEDGVKPNDVTFLSLLSACSHSGMMNKGMEYFTSMM 445

Query: 342 RR-GLDGNLALANALIDMYAKCGNISDS 368
            + G+D      ++ +D+ A+ G + D+
Sbjct: 446 SKYGIDPRFKHYSSAVDLLARGGQLEDA 473



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 110/196 (56%), Gaps = 3/196 (1%)

Query: 233 GKLIH--AAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
           GK +H  A +       +L +   ++  Y  F  ++ A + FD M  + +++W  +++GY
Sbjct: 30  GKSVHHRAIITSSASPPDLHLNTKLVIFYSHFGDVAAARRVFDGMPHRSVVSWTAMVSGY 89

Query: 291 EK-SGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
            K S   E L++F+ M      PN FTF S + AC        G+Q+HA   +    G++
Sbjct: 90  AKNSRPQEALDLFAFMLRSGARPNQFTFGSAVRACTGARCARSGEQIHACAAKGRFAGDM 149

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
            + +AL+DM+ +CG++ D++++F+EM  +DLV+W S+M G+    H  +A+ LFD M++ 
Sbjct: 150 FVQSALMDMHLRCGSVGDARRLFAEMERKDLVSWNSLMRGFVEREHCNDALGLFDSMLRD 209

Query: 410 GVRPDRIVFMAVLTAC 425
           G+ PD   F + L AC
Sbjct: 210 GMLPDHFTFGSALKAC 225



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 85/175 (48%), Gaps = 3/175 (1%)

Query: 317 FTSIIAACATLAALSCGQQVH--AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSE 374
           ++S++ +     A   G+ VH  A I       +L L   L+  Y+  G+++ ++++F  
Sbjct: 14  YSSLLQSSMGANAFRQGKSVHHRAIITSSASPPDLHLNTKLVIFYSHFGDVAAARRVFDG 73

Query: 375 MSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434
           M  R +V+WT+M+ GY  +   +EA++LF  M++SG RP++  F + + AC+ A     G
Sbjct: 74  MPHRSVVSWTAMVSGYAKNSRPQEALDLFAFMLRSGARPNQFTFGSAVRACTGARCARSG 133

Query: 435 LKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
            +            +  +   ++D+  R G V +A  L   M  K D   W  L+
Sbjct: 134 EQIHACAAKGRFAGDMFVQSALMDMHLRCGSVGDARRLFAEMERK-DLVSWNSLM 187



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 39/81 (48%)

Query: 42  PKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFV 101
           P G   L   L+  Y   G   ++R  FDEMP R+V+SWT +I           A T+F 
Sbjct: 348 PMGDLALDNALVDMYAKSGEFLDSRRAFDEMPNRNVISWTSLITSCAQHGFGEDAVTLFA 407

Query: 102 EMVRNEVNPNAFTLSSVLKAC 122
            M  + V PN  T  S+L AC
Sbjct: 408 RMEEDGVKPNDVTFLSLLSAC 428


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 193/570 (33%), Positives = 319/570 (55%), Gaps = 15/570 (2%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +++T L  +Y   G +++A+ +FD   ERDVVSW  M+  Y      ++A  +F  M+  
Sbjct: 261 VVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHE 320

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + P+  TL   + A  G  SL    ++H  A+++GL+  I + N+L+D+Y T C S + 
Sbjct: 321 GIPPSKVTL---VNASTGCSSLRFGRMIHACALEKGLDRDIVLGNALLDMY-TRCGSPEE 376

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR +F  +   N VSW T+I G +  G     L +F+ M LEG+     ++   + A AS
Sbjct: 377 ARHLFEGIP-GNAVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVAS 435

Query: 227 ----TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE--MTEK-D 279
                  ++ G+ +H+ ++  G+ S   +  +++ MY     + +A   F    M ++ D
Sbjct: 436 NPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHD 495

Query: 280 LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           +++WN II+   + G     L  F +M     +PN  T  +++ ACA  AAL+ G  VH 
Sbjct: 496 VVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGVIVHD 555

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGK 397
            +   G++ N+ +A AL  MY +CG++  +++IF +++ +RD+V + +M+  Y  +G   
Sbjct: 556 HLRHSGMESNVFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAG 615

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCV 456
           EA++LF  M + G RPD   F++VL+ACSH GL DEG + F+SM   Y + P+++ Y C 
Sbjct: 616 EALKLFWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACA 675

Query: 457 VDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMM 516
           VD+LGRAG + +A ELI+ M  KP   VW  LLGAC+++R  + G+LA   V +L P   
Sbjct: 676 VDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDE 735

Query: 517 GTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQ 576
             Y++LSNI A  GKW+E A+ R  M   G +K+ G SWIE++ +V  F+A D+    ++
Sbjct: 736 SAYVVLSNILAGAGKWDEAAEVRTEMESRGLRKQAGKSWIEIKSRVHEFVAGDRSHPRSE 795

Query: 577 YVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
            +Y  LE L   + E  Y PD   ++  ++
Sbjct: 796 EIYRELERLHAEIREIGYVPDTRLVLRKVD 825



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 134/457 (29%), Positives = 226/457 (49%), Gaps = 17/457 (3%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           +G S+LA  L+  Y   G +  A  LF+ M ERD+VSW   IA        + A  +F  
Sbjct: 160 EGKSVLANLLLHIYGSCGCVASAMLLFERM-ERDLVSWNAAIAANAQSGDLDMALELFQR 218

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M    V P   TL   L  C  ++    A  +H +  + GLE ++ V  +L   YA    
Sbjct: 219 MQLEGVRPARITLVITLSVCAKIR---QARAIHSIVRESGLEQTLVVSTALASAYARLG- 274

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            +D A+ VF+    ++ VSW  ++  YA  G+      +F  ML EG+  +  +   A  
Sbjct: 275 HLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVTLVNAST 334

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
            C+S   + FG++IHA  ++ G   ++ + N++LDMY R     +A   F E    + ++
Sbjct: 335 GCSS---LRFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLF-EGIPGNAVS 390

Query: 283 WNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACAT----LAALSCGQQVH 337
           WNT+IAG  + G     L +F +M+ E  +P   T+ +++ A A+      A++ G+++H
Sbjct: 391 WNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLH 450

Query: 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSE--MSDR-DLVTWTSMMIGYGAHG 394
           + IV  G     A+  A++ MYA CG I ++   F    M DR D+V+W +++     HG
Sbjct: 451 SRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHG 510

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG 454
           HGK A+  F  M   GV P++I  +AVL AC+ A  + EG+     +    +  N  +  
Sbjct: 511 HGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGVIVHDHLRHSGMESNVFVAT 570

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
            +  + GR G ++ A E+ + +  + D  ++  ++ A
Sbjct: 571 ALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAA 607



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 138/488 (28%), Positives = 230/488 (47%), Gaps = 26/488 (5%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L  +L++ Y     + +   +F  +  RD  SWT +I  YT      +A  +F  M +  
Sbjct: 64  LGNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEG 123

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDN 166
           V  +A T  +VLKAC  +  LS    +H   ++ GLEG   + N L+ +Y +C C++  +
Sbjct: 124 VRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLEGKSVLANLLLHIYGSCGCVA--S 181

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A L+F  M+ ++ VSW   I   A SG+    L +F+ M LEGV     +  I +  CA 
Sbjct: 182 AMLLFERME-RDLVSWNAAIAANAQSGDLDMALELFQRMQLEGVRPARITLVITLSVCAK 240

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +   + IH+ V + G    L V  ++   Y R   L  A + FD   E+D+++WN +
Sbjct: 241 ---IRQARAIHSIVRESGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAM 297

Query: 287 IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           +  Y + G  SE   +F++M  E   P+  T  +    C++   L  G+ +HA  + +GL
Sbjct: 298 LGAYAQHGHMSEAALLFARMLHEGIPPSKVTLVNASTGCSS---LRFGRMIHACALEKGL 354

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           D ++ L NAL+DMY +CG+  +++ +F  +   + V+W +M+ G    G  K A+ELF  
Sbjct: 355 DRDIVLGNALLDMYTRCGSPEEARHLFEGIPG-NAVSWNTMIAGSSQKGQMKRALELFQR 413

Query: 406 MVKSGVRPDRIVFMAVLTACS----HAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461
           M   G+ P R  ++ +L A +     A  + EG K    +          I   VV +  
Sbjct: 414 MQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYA 473

Query: 462 RAGRVKEAYELIK--SMPFKPDESVWGPLLGACKEHRLPNLGK--LAALRVLDLK---PN 514
             G + EA    +  +M  + D   W  ++ +  +H     GK  L   R +DL    PN
Sbjct: 474 SCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQH---GHGKRALGFFRRMDLHGVAPN 530

Query: 515 MMGTYIIL 522
            +    +L
Sbjct: 531 QITCVAVL 538



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 186/372 (50%), Gaps = 27/372 (7%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM 174
           L  +L+A    + LS    +H   +  GLE  +   N L+ +Y  C  S+ +   VF+ +
Sbjct: 32  LVRLLRAAGDDRLLSQGRRIHARIVSLGLEEEL--GNHLLRLYLKC-ESLGDVEEVFSRL 88

Query: 175 KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGK 234
           + +++ SWTT+IT Y   G     + +F  M  EGV  +  +F   ++ACA  G +S G+
Sbjct: 89  EVRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGR 148

Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG 294
            IHA +++ G      + N +L +Y    C++ A   F+ M E+DL++WN  IA   +SG
Sbjct: 149 SIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERM-ERDLVSWNAAIAANAQSG 207

Query: 295 SSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353
             +  L +F +M+ E   P   T    ++ CA +      + +H+ +   GL+  L ++ 
Sbjct: 208 DLDMALELFQRMQLEGVRPARITLVITLSVCAKIRQ---ARAIHSIVRESGLEQTLVVST 264

Query: 354 ALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP 413
           AL   YA+ G++  ++++F   ++RD+V+W +M+  Y  HGH  EA  LF  M+  G+ P
Sbjct: 265 ALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPP 324

Query: 414 DRIVFMAVLTACS--------HAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
            ++  +   T CS        HA  +++GL           + +  +   ++D+  R G 
Sbjct: 325 SKVTLVNASTGCSSLRFGRMIHACALEKGL-----------DRDIVLGNALLDMYTRCGS 373

Query: 466 VKEAYELIKSMP 477
            +EA  L + +P
Sbjct: 374 PEEARHLFEGIP 385


>gi|297794157|ref|XP_002864963.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310798|gb|EFH41222.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 720

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 199/598 (33%), Positives = 330/598 (55%), Gaps = 10/598 (1%)

Query: 16  HKIPPIIKQSLQSVKKSSIQSDPPLIPKG--PSILA-TNLIKSYFDEGLIEEARTLFDEM 72
           H    +++Q +     S I++    + K   P  L+ + L+ +    G I  AR LFD M
Sbjct: 48  HTFSQLLRQCIDERSISGIKNIQAQMLKSGFPVELSGSKLVDASLKCGEIGYARQLFDGM 107

Query: 73  PERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAA 132
           PER +V+W  +IA Y       +A  ++  M+ N V P+ +TLSSV KA   +     A 
Sbjct: 108 PERHIVTWNSIIAYYIKHRRSKEAVEMYRLMISNNVLPDEYTLSSVFKAFSDLSLEKEAQ 167

Query: 133 LVHGMAIKEGLEGS-IYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAH 191
             HG+A+  GLE S ++V ++L+D+Y     + + A+LV + ++ K+ V  T LI GY+ 
Sbjct: 168 RSHGLAVILGLEVSNVFVGSALVDMYVKFGKTRE-AKLVLDRVEEKDVVLITALIVGYSQ 226

Query: 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251
            G     +  F+ ML+E V+ N Y+++  + +C +   +  GKLIH  ++K GF S L  
Sbjct: 227 KGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALAS 286

Query: 252 MNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERF 310
             S+L MY R   + D+   F  +   + +TW ++I+G  ++G  E  L  F KM  +  
Sbjct: 287 QTSLLTMYLRCSLVDDSLLVFKCIKYPNQVTWTSLISGLVQNGREETALIEFRKMMRDSV 346

Query: 311 SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQK 370
            PN FT +S +  C+ LA    G+QVH  + + G D +    + LI++Y KCG    ++ 
Sbjct: 347 KPNSFTLSSALRGCSNLAMFEEGRQVHGIVSKYGFDRDKYAGSGLIELYGKCGCSDMARL 406

Query: 371 IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           +F  +S+ D+++  +M+  Y  +G G+EA+ELF+ M+  G++P+ +  ++VL AC+++GL
Sbjct: 407 VFDTLSEVDVISLNTMIYSYAQNGFGREALELFERMINLGLQPNDVTVLSVLLACNNSGL 466

Query: 431 VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490
           V+EG + F S     +    + Y C+VD+LGRAGR++EA  LI  +   PD  +W  LL 
Sbjct: 467 VEEGCELFDSFRKDKIMLTNDHYACMVDMLGRAGRLEEAEMLITEVT-NPDLVLWRTLLS 525

Query: 491 ACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKE 550
           ACK HR   + +    ++L++ P   GT I+LSN+YA+ GKW+   + +  M+ M  KK 
Sbjct: 526 ACKVHRKVEMAERITRKILEIAPGDEGTLILLSNLYASTGKWKRVIEMKSKMKEMKLKKN 585

Query: 551 VGMSWIEVRDKVCGFIANDKMGSH--TQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
             MSW+E+  +   F+A D + SH  ++ +   LE LI+   +  Y  D  C+  D+E
Sbjct: 586 PAMSWVEIDKETHTFMAGD-LFSHPNSEQILENLEELIKKAKDLGYVEDKSCVFQDME 642


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 185/516 (35%), Positives = 296/516 (57%), Gaps = 9/516 (1%)

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
           V+++  E NP   T   ++ +C    SLS+   VH   +  GL+   Y+   L+++Y   
Sbjct: 63  VQLLCCEPNPTKKTFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDL 122

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
             S+D+A  VF++ + K    W  +    A +  G   L ++ +M   G+  N ++++  
Sbjct: 123 G-SVDHACKVFDETREKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYV 181

Query: 221 VRACA----STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
           ++AC     S   +  GK IHA +++HG+  ++ VM ++LD+Y RF  +S A+  F  M 
Sbjct: 182 LKACVVSELSICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMP 241

Query: 277 EKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFS--PNCFTFTSIIAACATLAALSCG 333
           +K++++W+ +IA Y K+    + L +F  M  E     PN  T  S++ ACA+LAAL  G
Sbjct: 242 DKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHG 301

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
           + VHA ++RRGLD  L + N LI MY +CG IS  Q++F  M  RD+++W S++  YG H
Sbjct: 302 KLVHAYVLRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYGMH 361

Query: 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEI 452
           G GK+AI++F+ M+  GV P  I F+ VL ACSHAGLV+E    F+SM N Y ++P  E 
Sbjct: 362 GLGKKAIQIFENMINRGVSPSYITFITVLCACSHAGLVEEAKILFESMLNKYRIHPRMEH 421

Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLK 512
           Y C+VD+LGRA R+ EA ELI++M FKP  +VWG LLG+C+ H    L + A+  + +L+
Sbjct: 422 YACMVDILGRANRLDEAIELIQNMDFKPGPTVWGSLLGSCRIHCNVELAERASAMLFELE 481

Query: 513 PNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMG 572
           P   G Y++LS+IYA    W +  + RK +   G +K    SWIEV+ K+   ++ ++  
Sbjct: 482 PKNAGNYVLLSHIYAKSRMWNDVRRVRKQLESRGLQKIPSCSWIEVKRKIYSLVSIEEYN 541

Query: 573 SHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
              + +   L  L+  +    Y P  + + +DL+ E
Sbjct: 542 PQIEELCAFLITLLTEIKNQGYVPQTNVVTYDLDEE 577



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 153/304 (50%), Gaps = 19/304 (6%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           LAT LI  Y D G ++ A  +FDE  E+ +  W  +       +       ++ +M    
Sbjct: 111 LATKLINMYCDLGSVDHACKVFDETREKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIG 170

Query: 108 VNPNAFTLSSVLKACK----GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           +  N FT + VLKAC      +  L     +H   ++ G EG ++V  +L+DVYA     
Sbjct: 171 IPSNRFTYTYVLKACVVSELSICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGY- 229

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEM--NPYSFSIAV 221
           +  A  VF  M  KN VSW+ +I  YA +      L +F+ M+LE  +   NP +    +
Sbjct: 230 VSYASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVL 289

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
           +ACAS   +  GKL+HA V++ G  S LPV+N+++ MY R   +S   + FD M ++D+I
Sbjct: 290 QACASLAALEHGKLVHAYVLRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVI 349

Query: 282 TWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           +WN++I+ Y   G   + + +F  M +   SP+  TF +++ AC+           HAG+
Sbjct: 350 SWNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITFITVLCACS-----------HAGL 398

Query: 341 VRRG 344
           V   
Sbjct: 399 VEEA 402


>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 188/566 (33%), Positives = 307/566 (54%), Gaps = 67/566 (11%)

Query: 94  NQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLE-GSIYVENS 152
           N+A +    + R  +  ++ TL+S+L+ C   ++L     VH      GL+    ++ N 
Sbjct: 41  NEAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGLKRPGTFLSNH 100

Query: 153 LMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYA---------------------- 190
           L+++YA C   ++ AR VF+ M  +N  SW  +++GYA                      
Sbjct: 101 LINMYAKCGKEVE-ARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVS 159

Query: 191 -------HSGNGY--GGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
                  H+  GY    L  + E    G++ N +SF+  +  C     V   + +H  ++
Sbjct: 160 WNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQIL 219

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS------ 295
             GF SN+ + +S+LD Y +   + DA + FDEM+ +D++ W T+++GY K G       
Sbjct: 220 VAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANE 279

Query: 296 --------------------------SECLNMFSKMKSERFSPNCFTFTSIIAACATLAA 329
                                      + L +F+KM      P+ FTF+S + ACA++A+
Sbjct: 280 LFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIAS 339

Query: 330 LSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMI 388
           L  G+Q+HA ++R     N  + +ALIDMY+KCG++   +K+F  M ++ D+V W +++ 
Sbjct: 340 LKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIIS 399

Query: 389 GYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVN 447
               HG G+EAI++ D+MV+SG +PD+I F+ +L ACSH+GLV +GL +F+SM+ DY + 
Sbjct: 400 ALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIV 459

Query: 448 PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALR 507
           P++E Y C++DLLGRAG  +E  + ++ MP+KPD+ VW  LLG C+ H    LG+ AA R
Sbjct: 460 PSQEHYACLIDLLGRAGCFEEVMDQLEKMPYKPDDRVWNALLGVCRIHGHIELGRKAAER 519

Query: 508 VLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIA 567
           +++L+P     Y++LS+IYA  G+WE   K R++M     KKE  +SW+E+ +KV  F  
Sbjct: 520 LIELEPQSSTAYVLLSSIYAVLGRWESVQKVRQLMNERQVKKERAISWLEIENKVHSFSV 579

Query: 568 NDKMGSHTQYVYGVLEMLIRHMNETA 593
           +D      + +Y VLE L   M E A
Sbjct: 580 SDSSHPLKEQIYSVLEQLAGQMEEDA 605



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 128/470 (27%), Positives = 218/470 (46%), Gaps = 69/470 (14%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
            N++  Y   G+I+ AR LFD+MPE+DVVSW  M+  +      ++A   + E  +  + 
Sbjct: 130 NNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQ 189

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
            N F+ + VL  C  +K +     VHG  +  G   ++ + +S++D Y  C + M +AR 
Sbjct: 190 CNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGL-MGDARK 248

Query: 170 VFNDM----------------KW---------------KNDVSWTTLITGYAHSGNGYGG 198
           +F++M                KW               KN VSWT LI+GYA +G G+  
Sbjct: 249 LFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKA 308

Query: 199 LGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDM 258
           L +F +M+L  V  + ++FS  + ACAS   +  GK IHA +++  F  N  V+++++DM
Sbjct: 309 LELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDM 368

Query: 259 YCRFDCLSDANQYFDEMTEK-DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFT 316
           Y +   L    + FD M  K D++ WNTII+   + G   E + M   M      P+  T
Sbjct: 369 YSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKIT 428

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           F  I+ AC+           H+G+V++GL       N    M    G I  SQ+ ++ + 
Sbjct: 429 FVVILNACS-----------HSGLVQQGL-------NFFESMSCDYG-IVPSQEHYACLI 469

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
           D         ++G           E+ D++ K   +PD  V+ A+L  C   G ++ G K
Sbjct: 470 D---------LLGRAGCFE-----EVMDQLEKMPYKPDDRVWNALLGVCRIHGHIELGRK 515

Query: 437 YFKSMNDYNVNPNKE--IYGCVVDLLGRAGRVKEAYELIKSMPFKPDESV 484
             + + +     +    +   +  +LGR   V++  +L+     K + ++
Sbjct: 516 AAERLIELEPQSSTAYVLLSSIYAVLGRWESVQKVRQLMNERQVKKERAI 565



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 5/166 (3%)

Query: 285 TIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
            I+   +K+  +E ++    +       +  T  S++  CA   AL  G++VH  +   G
Sbjct: 30  AIVKLCKKNKLNEAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTG 89

Query: 345 LD-GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           L      L+N LI+MYAKCG   +++K+F +MS R+L +W +M+ GY   G  K A +LF
Sbjct: 90  LKRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLF 149

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN 449
           D+M +     D + +  ++ A +  G  DE L+++       +  N
Sbjct: 150 DKMPEK----DVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCN 191


>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
          Length = 907

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 172/532 (32%), Positives = 302/532 (56%), Gaps = 5/532 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           LA +++  Y   G +E+A+ LF+ M  RDV+SW  +++GY       +   + + M  + 
Sbjct: 183 LANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDG 242

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + P+  T  S++ A      L    +VHG  ++ GLE   ++E SL+ +Y  C  ++++A
Sbjct: 243 IEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCG-NVNSA 301

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             +F  M  K+ +SWT +I+G   +      + VF+ ML   V  +  + +  + ACA  
Sbjct: 302 FRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAEL 361

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
           G    G  +H  +++     ++P  NS++ MY +   L  +   FD M+ +D+++WN I+
Sbjct: 362 GSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIV 421

Query: 288 AGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           +G+ ++G   + L +F++M+  R  P+  T  S++ ACA++ AL  G+ +H  + +  L 
Sbjct: 422 SGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSCLG 481

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
             + +  AL+DMY+KCG++  +QK F  M  +DLV+W+S++ GYG+HG G+ A+ ++ + 
Sbjct: 482 PCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYSDF 541

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGR 465
           + +G++P+ ++++++L+ACSH GLVD+GL +F SM  D+ + P  E   C+VDLL RAGR
Sbjct: 542 LHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACIVDLLSRAGR 601

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           V+EAY   K M  KP   V G LL AC+      LG + A  ++ LKP   G Y+ L++ 
Sbjct: 602 VEEAYSFYKRMFPKPSMDVLGILLDACRTTGNVELGDIVAREIVILKPANAGNYVQLAHS 661

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQY 577
           YA+  +W+   +    M+ +  KK  G S+IE+   +  F  +    SH Q+
Sbjct: 662 YASMKRWDGVGEVWTQMKSLHLKKLPGWSFIELHGTITTFFTDH--SSHPQF 711



 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 134/451 (29%), Positives = 242/451 (53%), Gaps = 6/451 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S +AT+LI  Y   G  + AR +FD M +R+VV WT MI  YT    H+ A++++  M R
Sbjct: 83  SYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRR 142

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             + P++ T+  +L    G+  L +   +H   I+ G    + + NS+++VY  C   ++
Sbjct: 143 QGIQPSSVTMLGLL---SGVLELVHLQCLHACVIQYGFGSDVALANSMLNVYCKCG-RVE 198

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +A+ +F  M  ++ +SW +L++GYA  GN    L +   M  +G+E +  +F   V A A
Sbjct: 199 DAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAA 258

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               +  GK++H  +++ G   +  +  S++ MY +   ++ A + F+ M  KD+I+W  
Sbjct: 259 MQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTA 318

Query: 286 IIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I+G  ++  ++  + +F +M   R  P+  T  S++AACA L +   G  VH  I+R+ 
Sbjct: 319 MISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQR 378

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           +  ++   N+L+ MYAKCG++  S  +F  MS RD+V+W +++ G+  +GH  +A+ LF+
Sbjct: 379 IKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFN 438

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
           EM K+  RPD I  +++L AC+  G + +G      +    + P   I   +VD+  + G
Sbjct: 439 EMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCG 498

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            +  A +    MP + D   W  ++     H
Sbjct: 499 DLGSAQKCFDRMP-QQDLVSWSSIIAGYGSH 528



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 183/332 (55%), Gaps = 5/332 (1%)

Query: 99  VFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA 158
            +  M+  +  P+A T  S++KAC  +   S+    H   I +G     Y+  SL++ Y+
Sbjct: 35  TYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRVIVDGYSSDSYIATSLINFYS 94

Query: 159 TCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFS 218
               +  +AR VF+ M  +N V WTT+I  Y  +G       ++  M  +G++  P S +
Sbjct: 95  KFGHN-QSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQ--PSSVT 151

Query: 219 IAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK 278
           +          V   + +HA VI++GFGS++ + NS+L++YC+   + DA   F+ M  +
Sbjct: 152 MLGLLSGVLELVHL-QCLHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDAR 210

Query: 279 DLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
           D+I+WN++++GY + G+  E L +  +MK++   P+  TF S+++A A  + L  G+ VH
Sbjct: 211 DVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVH 270

Query: 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
             I+R GL+ +  +  +LI MY KCGN++ + +IF  M  +D+++WT+M+ G   +    
Sbjct: 271 GHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCAD 330

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
            A+ +F  M+KS V P      +VL AC+  G
Sbjct: 331 MAVTVFRRMLKSRVMPSTATIASVLAACAELG 362



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 103/334 (30%), Positives = 177/334 (52%), Gaps = 7/334 (2%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S + T+LI  Y   G +  A  +F+ M  +DV+SWT MI+G    +C + A TVF  M++
Sbjct: 282 SHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLK 341

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           + V P+  T++SVL AC  + S      VHG  +++ ++  I  +NSL+ +YA C   ++
Sbjct: 342 SRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCG-HLE 400

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA--VRA 223
            +  VF+ M  ++ VSW  +++G+A +G+    L +F EM        P S ++   ++A
Sbjct: 401 QSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEM--RKARQRPDSITVVSLLQA 458

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           CAS G +  GK IH  V K   G  + +  +++DMY +   L  A + FD M ++DL++W
Sbjct: 459 CASIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSW 518

Query: 284 NTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ-VHAGIV 341
           ++IIAGY   G  E  L M+S        PN   + SI++AC+    +  G    H+   
Sbjct: 519 SSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTK 578

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEM 375
             G++  L     ++D+ ++ G + ++   +  M
Sbjct: 579 DFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRM 612



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 173/356 (48%), Gaps = 7/356 (1%)

Query: 181 SWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAV 240
           S+  +I   + +G     L  +  ML      + ++F   V+AC S    S G   H  V
Sbjct: 15  SYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRV 74

Query: 241 IKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CL 299
           I  G+ S+  +  S+++ Y +F     A + FD M +++++ W T+I  Y ++G  +   
Sbjct: 75  IVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAF 134

Query: 300 NMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMY 359
           +M++ M+ +   P+  T   +++    L  L C   +HA +++ G   ++ALAN+++++Y
Sbjct: 135 SMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQC---LHACVIQYGFGSDVALANSMLNVY 191

Query: 360 AKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFM 419
            KCG + D+Q +F  M  RD+++W S++ GY   G+ +E ++L   M   G+ PD+  F 
Sbjct: 192 CKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFG 251

Query: 420 AVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
           ++++A +    +  G      +    +  +  I   ++ +  + G V  A+ + + M  K
Sbjct: 252 SLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHK 311

Query: 480 PDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEF 535
            D   W  ++    ++   ++      R+  LK  +M +   ++++ AA  +   F
Sbjct: 312 -DVISWTAMISGLVQNDCADMAVTVFRRM--LKSRVMPSTATIASVLAACAELGSF 364


>gi|125527050|gb|EAY75164.1| hypothetical protein OsI_03056 [Oryza sativa Indica Group]
          Length = 669

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 179/512 (34%), Positives = 296/512 (57%), Gaps = 5/512 (0%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           + L+  Y     ++EA  +F+EM ERDVVSWT MI+        ++   +  EM    + 
Sbjct: 160 SGLVNYYGAFRSVKEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGII 219

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNAR 168
           PN  T+ S+L AC   +++     V+    K G+E  + + N+L+ +Y  C C+S  +A 
Sbjct: 220 PNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLS--DAL 277

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
             F  M  +   SW TLI G+  +      L +F+EMLL GV  +  +    + ACA  G
Sbjct: 278 EAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLG 337

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            +  G  +H+ +  +G   +  + NS+++MY +   ++ A + F  MT+KD+++W  ++ 
Sbjct: 338 ELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVC 397

Query: 289 GYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           GY K    +   N+F +MK      +     S+++AC+ L AL  G+++H+ I    +  
Sbjct: 398 GYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAK 457

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           +L L +AL+DMYAKCG I  + +IF +M  +  ++W +M+ G  ++G+GKEA+ELFD+M+
Sbjct: 458 DLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQML 517

Query: 408 K-SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
           +    +PD I   AVL AC+H G+VDEGL+YF  M+   V P+ E YGC+VDLLGRAG +
Sbjct: 518 ELQDPKPDGITLKAVLGACAHVGMVDEGLRYFYLMSSLGVVPDTEHYGCIVDLLGRAGML 577

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            EA+  IK MP +P+  +WG LL AC+ H   +LGK+    ++++ PN +G ++++SN++
Sbjct: 578 DEAFHFIKKMPIEPNPVIWGSLLAACRVHHRMDLGKVIGQHIVNVAPNDVGVHVLVSNLH 637

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEV 558
           A E +W++    R +M   G +K  G S ++V
Sbjct: 638 AEESQWDDVEHVRGLMGSRGIEKTPGHSSVQV 669



 Score =  222 bits (565), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 133/430 (30%), Positives = 225/430 (52%), Gaps = 6/430 (1%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTL---SSVLKA 121
           AR +FD M + +   W  MI GY+S      A  VF EM R  V+P+ +T+    S   A
Sbjct: 71  ARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAA 130

Query: 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS 181
             G+K  SN   +H +  + G    ++V + L++ Y     S+  A  VF +M  ++ VS
Sbjct: 131 FAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGA-FRSVKEASKVFEEMYERDVVS 189

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           WT++I+  A  G+    L +  EM  EG+  N  +    + AC  T  V  G+ ++  V 
Sbjct: 190 WTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVG 249

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLN 300
           K G  +++ + N+++ MY +  CLSDA + F  M  +   +WNT+I G+ +     E L 
Sbjct: 250 KFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALR 309

Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360
           +F +M     +P+  T  S+++ACA L  L  G  VH+ I   G+  +  L N+LI+MYA
Sbjct: 310 IFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYA 369

Query: 361 KCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420
           KCG+++ ++++F  M+ +D+V+WT M+ GY        A  LF+EM  + V    +  ++
Sbjct: 370 KCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVS 429

Query: 421 VLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKP 480
           +L+ACS  G +D+G +    + + NV  +  +   +VD+  + G +  A E+ + M  K 
Sbjct: 430 LLSACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQ 489

Query: 481 DESVWGPLLG 490
             S W  ++G
Sbjct: 490 TLS-WNAMIG 498



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 116/399 (29%), Positives = 209/399 (52%), Gaps = 11/399 (2%)

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           ++  P    L + L AC    S ++ A +HG  ++  L    +V   L+ + A+     D
Sbjct: 11  SQARPIRHHLLAYLDACA---SRAHLAELHGRLVRAHLTSDSFVAGRLIALLASPAARHD 67

Query: 166 --NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
              AR VF+ M   N   W  +I GY+        L VF+EM   GV  + Y+ +  V A
Sbjct: 68  MRYARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSA 127

Query: 224 CASTG---WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
            A+     W S G  IHA V + GF S++ VM+ +++ Y  F  + +A++ F+EM E+D+
Sbjct: 128 SAAFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVKEASKVFEEMYERDV 187

Query: 281 ITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           ++W ++I+   + G   + L M S+M++E   PN  T  S+++AC    A+  G+ V+  
Sbjct: 188 VSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQ 247

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
           + + G++ ++ + NALI MY KCG +SD+ + F  M  R   +W +++ G+  +   KEA
Sbjct: 248 VGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEA 307

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL 459
           + +F+EM+  GV PD I  ++VL+AC+  G + +G+     + D  +  +  +   ++++
Sbjct: 308 LRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINM 367

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLL-GACKEHRL 497
             + G +  A  + ++M  K D   W  ++ G  K H+ 
Sbjct: 368 YAKCGDMAAAERVFQTMT-KKDVVSWTVMVCGYVKGHQF 405



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 120/247 (48%), Gaps = 5/247 (2%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           +IL  +LI  Y   G +  A  +F  M ++DVVSWTVM+ GY   +    A+ +F EM  
Sbjct: 358 NILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKI 417

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISM 164
            EV  +   L S+L AC  + +L     +H    +  +   + +E++L+D+YA C CI  
Sbjct: 418 AEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCI-- 475

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEML-LEGVEMNPYSFSIAVRA 223
           D A  +F  M+ K  +SW  +I G A +G G   + +F +ML L+  + +  +    + A
Sbjct: 476 DTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGA 535

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLIT 282
           CA  G V  G      +   G   +      I+D+  R   L +A  +  +M  E + + 
Sbjct: 536 CAHVGMVDEGLRYFYLMSSLGVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIEPNPVI 595

Query: 283 WNTIIAG 289
           W +++A 
Sbjct: 596 WGSLLAA 602


>gi|413918945|gb|AFW58877.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 768

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 195/579 (33%), Positives = 317/579 (54%), Gaps = 10/579 (1%)

Query: 27  QSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAG 86
           + V   +I+SD      G  I+   L+  Y   G + +   LF+ + ++D+ SW  +IAG
Sbjct: 166 RQVHAQAIKSDN----GGHLIVQNALVTMYSKSGSVGDGFALFERIRDKDLFSWGSIIAG 221

Query: 87  YTSFNCHNQAWTVFVEMVRNEVN-PNAFTLSSVLKACKG-MKSLSNAALVHGMAIKEGLE 144
                    A  +F EM+   ++ PN F   SV +AC   + SL     +HG+ +K  L+
Sbjct: 222 LAQQGREMDALHIFREMIAEGMHHPNEFHFGSVFRACSVVINSLEYGEQIHGLCVKYKLD 281

Query: 145 GSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKE 204
            + Y   SL D+YA C   +D+A  VF  ++  + VSW +LI  ++  G     + +F E
Sbjct: 282 RNSYAGCSLGDMYARCN-KLDSAMKVFYRIESPDLVSWNSLINAFSADGLLSEAMVLFSE 340

Query: 205 MLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264
           M    ++ +  +    + AC     +  G+ IH+ ++K G G ++ V NS++ MY R   
Sbjct: 341 MRYSSLKPDGITVMALLCACVGCDALRQGRSIHSYLVKLGLGGDVMVCNSLISMYTRCLD 400

Query: 265 LSDANQYFDEMTEKDLITWNTII-AGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAA 323
              A   F E  ++D++TWN+I+ A  +     +   +F  + S   S +  +  ++++A
Sbjct: 401 FPSAMDVFHETNDRDVVTWNSILTACVQHRHMEDVFKLFRLLHSSMPSLDRISLNNVLSA 460

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEM-SDRDLVT 382
            A L      +QVHA   + GL  +  L+NALID YAKCG++ D+ K+F  M + RD+ +
Sbjct: 461 SAELGYFEMAKQVHAYAFKVGLVSDAILSNALIDTYAKCGSLDDANKLFEIMGTGRDVFS 520

Query: 383 WTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN 442
           W+S+++GY   G+ KEA++LF  M   GV+P+ + F+ VL ACS  GLVDEG  Y+  M 
Sbjct: 521 WSSLIVGYAQFGYAKEALDLFARMRNLGVKPNHVTFVGVLIACSRVGLVDEGCYYYSIME 580

Query: 443 -DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLG 501
            +Y + P KE   CV+DLL RAGR+ EA + +  MPF+PD  +W  LL A + H    +G
Sbjct: 581 PEYGIVPTKEHCSCVIDLLARAGRLSEAAKFVDQMPFEPDIIMWNTLLAASRTHNDVEMG 640

Query: 502 KLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDK 561
           K AA  VL++ P+    Y++L NIYA+ G W EFA+ +K MR  G +K  G SWI+++ +
Sbjct: 641 KRAAEGVLNIDPSHSAAYVLLCNIYASSGNWNEFARLKKDMRSSGVQKSPGKSWIKLKGE 700

Query: 562 VCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDC 600
           +  FI  D+    +  +Y +L+++   M +  Y P++ C
Sbjct: 701 LKVFIVEDRSHPESDEMYTMLDLIGFEMVKAGYIPELSC 739



 Score =  211 bits (538), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 138/478 (28%), Positives = 234/478 (48%), Gaps = 14/478 (2%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           +IL+ +LI  Y      + AR +FD M +R+ VSW  +IA +   +    A  +F  M+R
Sbjct: 80  TILSNHLITMYGRCAAPDSARMVFDGMLDRNPVSWAAVIAAHAQNSRCADAMGLFSSMLR 139

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
               P+ F L S ++AC  +  L     VH  AIK    G + V+N+L+ +Y+    S+ 
Sbjct: 140 LGTAPDEFALGSAVRACAELGDLGLGRQVHAQAIKSDNGGHLIVQNALVTMYSKSG-SVG 198

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEM-NPYSFSIAVRAC 224
           +   +F  ++ K+  SW ++I G A  G     L +F+EM+ EG+   N + F    RAC
Sbjct: 199 DGFALFERIRDKDLFSWGSIIAGLAQQGREMDALHIFREMIAEGMHHPNEFHFGSVFRAC 258

Query: 225 AST-GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           +     + +G+ IH   +K+    N     S+ DMY R + L  A + F  +   DL++W
Sbjct: 259 SVVINSLEYGEQIHGLCVKYKLDRNSYAGCSLGDMYARCNKLDSAMKVFYRIESPDLVSW 318

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N++I  +   G  SE + +FS+M+     P+  T  +++ AC    AL  G+ +H+ +V+
Sbjct: 319 NSLINAFSADGLLSEAMVLFSEMRYSSLKPDGITVMALLCACVGCDALRQGRSIHSYLVK 378

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            GL G++ + N+LI MY +C +   +  +F E +DRD+VTW S++     H H ++  +L
Sbjct: 379 LGLGGDVMVCNSLISMYTRCLDFPSAMDVFHETNDRDVVTWNSILTACVQHRHMEDVFKL 438

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           F  +  S    DRI    VL+A +  G  +   +         +  +  +   ++D   +
Sbjct: 439 FRLLHSSMPSLDRISLNNVLSASAELGYFEMAKQVHAYAFKVGLVSDAILSNALIDTYAK 498

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLL------GACKEHRLPNLGKLAALRVLDLKPN 514
            G + +A +L + M    D   W  L+      G  KE     L   A +R L +KPN
Sbjct: 499 CGSLDDANKLFEIMGTGRDVFSWSSLIVGYAQFGYAKE----ALDLFARMRNLGVKPN 552



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 117/383 (30%), Positives = 192/383 (50%), Gaps = 10/383 (2%)

Query: 122 CKGMKSLSNAALVHG--MAIKEG---LEGSIYVENSLMDVYATCCISMDNARLVFNDMKW 176
           C  ++S     LVH   +A   G   L  +  + N L+ +Y  C  + D+AR+VF+ M  
Sbjct: 50  CSRLRSFPQGRLVHRHLLASSAGAAYLARNTILSNHLITMYGRCA-APDSARMVFDGMLD 108

Query: 177 KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLI 236
           +N VSW  +I  +A +      +G+F  ML  G   + ++   AVRACA  G +  G+ +
Sbjct: 109 RNPVSWAAVIAAHAQNSRCADAMGLFSSMLRLGTAPDEFALGSAVRACAELGDLGLGRQV 168

Query: 237 HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS 296
           HA  IK   G +L V N+++ MY +   + D    F+ + +KDL +W +IIAG  + G  
Sbjct: 169 HAQAIKSDNGGHLIVQNALVTMYSKSGSVGDGFALFERIRDKDLFSWGSIIAGLAQQGRE 228

Query: 297 -ECLNMFSKMKSERF-SPNCFTFTSIIAACA-TLAALSCGQQVHAGIVRRGLDGNLALAN 353
            + L++F +M +E    PN F F S+  AC+  + +L  G+Q+H   V+  LD N     
Sbjct: 229 MDALHIFREMIAEGMHHPNEFHFGSVFRACSVVINSLEYGEQIHGLCVKYKLDRNSYAGC 288

Query: 354 ALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP 413
           +L DMYA+C  +  + K+F  +   DLV+W S++  + A G   EA+ LF EM  S ++P
Sbjct: 289 SLGDMYARCNKLDSAMKVFYRIESPDLVSWNSLINAFSADGLLSEAMVLFSEMRYSSLKP 348

Query: 414 DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELI 473
           D I  MA+L AC     + +G      +    +  +  +   ++ +  R      A ++ 
Sbjct: 349 DGITVMALLCACVGCDALRQGRSIHSYLVKLGLGGDVMVCNSLISMYTRCLDFPSAMDVF 408

Query: 474 KSMPFKPDESVWGPLLGACKEHR 496
                + D   W  +L AC +HR
Sbjct: 409 HETNDR-DVVTWNSILTACVQHR 430


>gi|356509996|ref|XP_003523727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Glycine max]
          Length = 586

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 183/502 (36%), Positives = 299/502 (59%), Gaps = 9/502 (1%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM 174
           L+ +L  C   + L     VHG+  K G +    V NS++D+Y+ C +  + AR VFN +
Sbjct: 7   LNKILNKCSKRRLLDQGKQVHGVVEKLGFDVIXVVGNSMIDMYSKCGMVGEAAR-VFNTL 65

Query: 175 KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGK 234
             +N +SW  +I GY +  NG   L +F+EM  +G   + Y++S +++AC+       G 
Sbjct: 66  PVRNVISWNAMIAGYTNERNGEEALNLFREMREKGEVPDGYTYSSSLKACSCADAAGEGM 125

Query: 235 LIHAAVIKHGFG--SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-E 291
            IHAA+I+HGF   +   V  +++D+Y +   +++A + FD + EK +++W+T+I GY +
Sbjct: 126 QIHAALIRHGFPYLAQSAVAGALVDLYVKCRRMAEARKVFDRIEEKSVMSWSTLILGYAQ 185

Query: 292 KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR--RGLDGNL 349
           +    E +++F +++  R   + F  +SII   A  A L  G+Q+HA  ++   GL   +
Sbjct: 186 EDNLKEAMDLFRELRESRHRMDGFVLSSIIGVFADFALLEQGKQMHAYTIKVPYGLL-EM 244

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
           ++AN+++DMY KCG   ++  +F EM +R++V+WT M+ GYG HG G +A+ELF+EM ++
Sbjct: 245 SVANSVLDMYMKCGLTVEADALFREMLERNVVSWTVMITGYGKHGIGNKAVELFNEMQEN 304

Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKE 468
           G+ PD + ++AVL+ACSH+GL+ EG KYF  + ++  + P  E Y C+VDLLGR GR+KE
Sbjct: 305 GIEPDSVTYLAVLSACSHSGLIKEGKKYFSILCSNQKIKPKVEHYACMVDLLGRGGRLKE 364

Query: 469 AYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA 528
           A  LI+ MP KP+  +W  LL  C+ H    +GK     +L  + N    Y+++SN+YA 
Sbjct: 365 AKNLIEKMPLKPNVGIWQTLLSVCRMHGDVEMGKQVGEILLRREGNNPANYVMVSNMYAH 424

Query: 529 EGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL-EMLIR 587
            G W+E  K R+ ++  G KKE G SW+E+  ++  F   D M    + ++ VL EM  R
Sbjct: 425 AGYWKESEKIRETLKRKGLKKEAGRSWVEMDKEIHIFYNGDGMHPLIEEIHEVLKEMEKR 484

Query: 588 HMNETAYEPDIDCLIHDLEGET 609
              E  Y   I+  +HD+E E+
Sbjct: 485 VKEEMGYVHSINFSLHDVEEES 506



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 117/456 (25%), Positives = 224/456 (49%), Gaps = 24/456 (5%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++  ++I  Y   G++ EA  +F+ +P R+V+SW  MIAGYT+     +A  +F EM   
Sbjct: 40  VVGNSMIDMYSKCGMVGEAARVFNTLPVRNVISWNAMIAGYTNERNGEEALNLFREMREK 99

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLE--GSIYVENSLMDVYATCCISM 164
              P+ +T SS LKAC    +      +H   I+ G        V  +L+D+Y   C  M
Sbjct: 100 GEVPDGYTYSSSLKACSCADAAGEGMQIHAALIRHGFPYLAQSAVAGALVDLYVK-CRRM 158

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
             AR VF+ ++ K+ +SW+TLI GYA   N    + +F+E+      M+ +  S  +   
Sbjct: 159 AEARKVFDRIEEKSVMSWSTLILGYAQEDNLKEAMDLFRELRESRHRMDGFVLSSIIGVF 218

Query: 225 ASTGWVSFGKLIHAAVIKHGFG-SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           A    +  GK +HA  IK  +G   + V NS+LDMY +     +A+  F EM E+++++W
Sbjct: 219 ADFALLEQGKQMHAYTIKVPYGLLEMSVANSVLDMYMKCGLTVEADALFREMLERNVVSW 278

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV- 341
             +I GY K G  ++ + +F++M+     P+  T+ ++++AC+    +  G++  + +  
Sbjct: 279 TVMITGYGKHGIGNKAVELFNEMQENGIEPDSVTYLAVLSACSHSGLIKEGKKYFSILCS 338

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHGH---GK 397
            + +   +     ++D+  + G + +++ +  +M  + ++  W +++     HG    GK
Sbjct: 339 NQKIKPKVEHYACMVDLLGRGGRLKEAKNLIEKMPLKPNVGIWQTLLSVCRMHGDVEMGK 398

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYN---------VNP 448
           +  E+   + + G  P   V ++ + A  HAG   E  K  +++             V  
Sbjct: 399 QVGEIL--LRREGNNPANYVMVSNMYA--HAGYWKESEKIRETLKRKGLKKEAGRSWVEM 454

Query: 449 NKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESV 484
           +KEI+    +  G    ++E +E++K M  +  E +
Sbjct: 455 DKEIH-IFYNGDGMHPLIEEIHEVLKEMEKRVKEEM 489



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 167/395 (42%), Gaps = 56/395 (14%)

Query: 34  IQSDPPLIPKG-----PSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYT 88
           +Q    LI  G      S +A  L+  Y     + EAR +FD + E+ V+SW+ +I GY 
Sbjct: 125 MQIHAALIRHGFPYLAQSAVAGALVDLYVKCRRMAEARKVFDRIEEKSVMSWSTLILGYA 184

Query: 89  SFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIK--EGLEGS 146
             +   +A  +F E+  +    + F LSS++        L     +H   IK   GL   
Sbjct: 185 QEDNLKEAMDLFRELRESRHRMDGFVLSSIIGVFADFALLEQGKQMHAYTIKVPYGLL-E 243

Query: 147 IYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEML 206
           + V NS++D+Y  C ++++ A  +F +M  +N VSWT +ITGY   G G   + +F EM 
Sbjct: 244 MSVANSVLDMYMKCGLTVE-ADALFREMLERNVVSWTVMITGYGKHGIGNKAVELFNEMQ 302

Query: 207 LEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLS 266
             G+E +  ++   + AC+ +G +  GK   + +      SN  +   +    C  D L 
Sbjct: 303 ENGIEPDSVTYLAVLSACSHSGLIKEGKKYFSILC-----SNQKIKPKVEHYACMVDLLG 357

Query: 267 DANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACAT 326
              +                          E  N+  KM      PN   + ++++ C  
Sbjct: 358 RGGRL------------------------KEAKNLIEKMP---LKPNVGIWQTLLSVCRM 390

Query: 327 LAALSCGQQVHAGIVRRGLDGNLALANALI-DMYAKCGNISDSQKIFSEMSDRDL----- 380
              +  G+QV   ++RR  +GN      ++ +MYA  G   +S+KI   +  + L     
Sbjct: 391 HGDVEMGKQVGEILLRR--EGNNPANYVMVSNMYAHAGYWKESEKIRETLKRKGLKKEAG 448

Query: 381 VTWTSM-------MIGYGAHGHGKEAIELFDEMVK 408
            +W  M         G G H   +E  E+  EM K
Sbjct: 449 RSWVEMDKEIHIFYNGDGMHPLIEEIHEVLKEMEK 483


>gi|297744484|emb|CBI37746.3| unnamed protein product [Vitis vinifera]
          Length = 2090

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 192/546 (35%), Positives = 306/546 (56%), Gaps = 8/546 (1%)

Query: 45  PSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
           PS+   N + S + +  +E A  LFDEM ERDV+SW+VMI GY        A  +F+EM 
Sbjct: 171 PSV--QNSLLSMYADNDMERAEELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMT 228

Query: 105 RN-EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
            N  +  +  T+ SVLKAC     +S    VHG+ I  GL+  ++V NS++D+Y+ C   
Sbjct: 229 SNASIELDGITMVSVLKACANTGDISMGRSVHGVVICRGLDYDLFVGNSIIDMYSKC-DD 287

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
            ++A   FN+M  +N VSW ++I+G   +      L +F  M   G   +  +    +++
Sbjct: 288 HESAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQS 347

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C         K IH+ VI+ G+  N  V+NS++D Y + D +  A + FD +  KD ++W
Sbjct: 348 CKYFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLIELAWKLFDRLKTKDTVSW 407

Query: 284 NTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           + +IAG+   G   E + +F +M   +  PN  T  S++ A +  A L   +  H   +R
Sbjct: 408 SAMIAGFNHCGKPDEAIALFQEMNQAQEKPNGVTILSLLEAFSVSADLKRSKWAHGIAIR 467

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
           RGL   +A+  A++DMYAKCG I  S+K F ++ ++++V+W +M+   G +G  ++A+ L
Sbjct: 468 RGLAAEVAVGTAILDMYAKCGEIGLSRKAFDQIPEKNIVSWGAMIAACGMNGLARDALAL 527

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLG 461
             EM   G++P+ +  ++VL+ACSH GLV+EGL +F++M  D+ V P  E Y C+VD+L 
Sbjct: 528 LSEMKLHGLKPNVVTTLSVLSACSHGGLVEEGLSFFENMVQDHGVEPGLEHYSCMVDMLS 587

Query: 462 RAGRVKEAYELIKSMP--FKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
           RAG++  A  LI+ MP   +    +WG LL AC+      LG  AA RVL+L+P     Y
Sbjct: 588 RAGKLNSAMNLIEKMPERMRDGAGLWGALLSACRSSGNSRLGAGAAFRVLELEPQSSAGY 647

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVY 579
            + S++YAA G W + A+ R +++  G +   G S + V DK   F+A D+       ++
Sbjct: 648 FLASSMYAASGLWADAARMRWLVKARGVRVVAGYSLVHVEDKAWRFVAGDESHPRAGEIW 707

Query: 580 GVLEML 585
           GV+E L
Sbjct: 708 GVVEQL 713



 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 147/518 (28%), Positives = 262/518 (50%), Gaps = 28/518 (5%)

Query: 27  QSVKKSSIQ-SDPPLI----------PKGPSILAT--NLIKSYFDEGLIEEARTLFDEMP 73
             +KK+  Q +DP L+          P   S+ +T  +++  Y   G ++ A  +FD M 
Sbjct: 38  HQMKKAGAQLTDPTLVHSILKACSSLPGFDSLTSTGNSVLDFYMKTGALDSALFVFDSMR 97

Query: 74  ERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAAL 133
            RD VSW +MI G+ S    ++    F +       PN  TL   + AC+ + ++     
Sbjct: 98  SRDSVSWNIMIHGHLSRGASDKGLWWFRQARVIAFEPNVSTLVLAIHACRSLGAMEEGLK 157

Query: 134 VHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSG 193
           +HG  I+ G      V+NSL+ +YA     M+ A  +F++M  ++ +SW+ +I GY  +G
Sbjct: 158 MHGYIIRSGFLDIPSVQNSLLSMYADN--DMERAEELFDEMCERDVISWSVMIGGYVQTG 215

Query: 194 NGYGGLGVFKEMLLEG-VEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVM 252
                L +F EM     +E++  +    ++ACA+TG +S G+ +H  VI  G   +L V 
Sbjct: 216 EAKMALQLFLEMTSNASIELDGITMVSVLKACANTGDISMGRSVHGVVICRGLDYDLFVG 275

Query: 253 NSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFS 311
           NSI+DMY + D    A + F+EM  ++ ++WN+II+G  ++   SE L++F  M    F 
Sbjct: 276 NSIIDMYSKCDDHESAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFR 335

Query: 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKI 371
            +  T  +++ +C         + +H+ ++R G + N  + N+LID Y+KC  I  + K+
Sbjct: 336 ADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLIELAWKL 395

Query: 372 FSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLV 431
           F  +  +D V+W++M+ G+   G   EAI LF EM ++  +P+ +  +++L A S    V
Sbjct: 396 FDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQEKPNGVTILSLLEAFS----V 451

Query: 432 DEGLKYFKSMNDYNVN----PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGP 487
              LK  K  +   +         +   ++D+  + G +  + +    +P K   S WG 
Sbjct: 452 SADLKRSKWAHGIAIRRGLAAEVAVGTAILDMYAKCGEIGLSRKAFDQIPEKNIVS-WGA 510

Query: 488 LLGACKEHRLPN--LGKLAALRVLDLKPNMMGTYIILS 523
           ++ AC  + L    L  L+ +++  LKPN++ T  +LS
Sbjct: 511 MIAACGMNGLARDALALLSEMKLHGLKPNVVTTLSVLS 548



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 129/455 (28%), Positives = 226/455 (49%), Gaps = 17/455 (3%)

Query: 123 KGMKSLSNAALVHGM----AIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKN 178
           K    L++  LVH +    +   G +      NS++D Y     ++D+A  VF+ M+ ++
Sbjct: 42  KAGAQLTDPTLVHSILKACSSLPGFDSLTSTGNSVLDFYMKTG-ALDSALFVFDSMRSRD 100

Query: 179 DVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHA 238
            VSW  +I G+   G    GL  F++  +   E N  +  +A+ AC S G +  G  +H 
Sbjct: 101 SVSWNIMIHGHLSRGASDKGLWWFRQARVIAFEPNVSTLVLAIHACRSLGAMEEGLKMHG 160

Query: 239 AVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE- 297
            +I+ GF     V NS+L MY   D +  A + FDEM E+D+I+W+ +I GY ++G ++ 
Sbjct: 161 YIIRSGFLDIPSVQNSLLSMYADND-MERAEELFDEMCERDVISWSVMIGGYVQTGEAKM 219

Query: 298 CLNMFSKMKSE-RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALI 356
            L +F +M S      +  T  S++ ACA    +S G+ VH  ++ RGLD +L + N++I
Sbjct: 220 ALQLFLEMTSNASIELDGITMVSVLKACANTGDISMGRSVHGVVICRGLDYDLFVGNSII 279

Query: 357 DMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI 416
           DMY+KC +   + K F+EM  R+ V+W S++ G        EA+ LF  M K+G R D +
Sbjct: 280 DMYSKCDDHESAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEV 339

Query: 417 VFMAVLTACSHAGLVDE-GLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
             + +L +C +   VD    K+  S+   +    N+ +   ++D   +   ++ A++L  
Sbjct: 340 TLVNLLQSCKY--FVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLIELAWKLFD 397

Query: 475 SMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNMMGTYIILSNI-YAAEGK 531
            +  K D   W  ++        P+  +     +     KPN +    +L     +A+ K
Sbjct: 398 RLKTK-DTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQEKPNGVTILSLLEAFSVSADLK 456

Query: 532 WEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFI 566
             ++A    I RG+ ++  VG + +++  K CG I
Sbjct: 457 RSKWAHGIAIRRGLAAEVAVGTAILDMYAK-CGEI 490


>gi|218194084|gb|EEC76511.1| hypothetical protein OsI_14286 [Oryza sativa Indica Group]
          Length = 656

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 183/597 (30%), Positives = 317/597 (53%), Gaps = 53/597 (8%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +L    +      G + +A  LFD MP ++VV+WT +++G T       A  +F +MV +
Sbjct: 49  VLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGCTRNGRPEAALAMFADMVES 108

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V PN F  ++ L AC  + +L     VH +A++ G  G  ++ + L+++Y+ C  S+  
Sbjct: 109 GVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCG-SLPA 167

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC-- 224
           A+ VF+ M   + V +T+LI+ +  +G          +ML +G++ N ++ +  + AC  
Sbjct: 168 AKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPR 227

Query: 225 ----------------------ASTGWVSF--------------------------GKLI 236
                                 +ST  + F                          G+ +
Sbjct: 228 VLGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNEGVDPNEFALSIVLGACGSIGLGRQL 287

Query: 237 HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS 296
           H + IKH   +++ V N++L MY R   + +     +++   DL++W T I+   ++G  
Sbjct: 288 HCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFG 347

Query: 297 E-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
           E  + +  +M SE F+PN + F+S++++CA +A+L  G Q H   ++ G D  +   NAL
Sbjct: 348 EKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNAL 407

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           I+MY+KCG +  ++  F  M   D+ +W S++ G+  HG   +A+E+F +M  +G++PD 
Sbjct: 408 INMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDD 467

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
             F+ VL  C+H+G+V+EG  +F+ M D Y+  P    Y C++D+LGR GR  EA  +I 
Sbjct: 468 STFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMIN 527

Query: 475 SMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEE 534
            MPF+PD  +W  LL +CK HR  ++GKLAA R+++L      +Y+++SNIYA  G+WE+
Sbjct: 528 DMPFEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWED 587

Query: 535 FAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNE 591
             K R+ M   G KK+ G SWIE+ ++V  F + D    ++  +Y +L  L+  M +
Sbjct: 588 ARKVRRRMDETGVKKDAGCSWIEINNEVHTFASRDMSHPNSDSIYQMLGELVAVMQD 644


>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Vitis vinifera]
          Length = 732

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 176/550 (32%), Positives = 310/550 (56%), Gaps = 7/550 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           LA +++  Y   G +E+A+ LF+ M  RDV+SW  +++GY       +   + + M  + 
Sbjct: 183 LANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDG 242

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + P+  T  S++ A      L    +VHG  ++ GLE   ++E SL+ +Y  C  ++++A
Sbjct: 243 IEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCG-NVNSA 301

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             +F  M  K+ +SWT +I+G   +      + VF+ ML   V  +  + +  + ACA  
Sbjct: 302 FRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAEL 361

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
           G    G  +H  +++     ++P  NS++ MY +   L  +   FD M+ +D+++WN I+
Sbjct: 362 GSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIV 421

Query: 288 AGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           +G+ ++G   + L +F++M+  R  P+  T  S++ ACA++ AL  G+ +H  + +  L 
Sbjct: 422 SGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSCLG 481

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
             + +  AL+DMY+KCG++  +QK F  M  +DLV+W+S++ GYG+HG G+ A+ ++ + 
Sbjct: 482 PCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYSDF 541

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGR 465
           + +G++P+ ++++++L+ACSH GLVD+GL +F SM  D+ + P  E   C+VDLL RAGR
Sbjct: 542 LHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACIVDLLSRAGR 601

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           V+EAY   K M  KP   V G LL AC+      LG + A  ++ LKP   G Y+ L++ 
Sbjct: 602 VEEAYSFYKRMFPKPSMDVLGILLDACRTTGNVELGDIVAREIVILKPANAGNYVQLAHS 661

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQY--VYGVLE 583
           YA+  +W+   +    M+ +  KK  G S+IE+   +  F  +    SH Q+  +  VL+
Sbjct: 662 YASMKRWDGVGEVWTQMKSLHLKKLPGWSFIELHGTITTFFTDHS--SHPQFEEIMLVLK 719

Query: 584 MLIRHMNETA 593
           +L   M +  
Sbjct: 720 ILGSEMRKVG 729



 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 134/451 (29%), Positives = 242/451 (53%), Gaps = 6/451 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S +AT+LI  Y   G  + AR +FD M +R+VV WT MI  YT    H+ A++++  M R
Sbjct: 83  SYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRR 142

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             + P++ T+  +L    G+  L +   +H   I+ G    + + NS+++VY  C   ++
Sbjct: 143 QGIQPSSVTMLGLL---SGVLELVHLQCLHACVIQYGFGSDVALANSMLNVYCKCG-RVE 198

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +A+ +F  M  ++ +SW +L++GYA  GN    L +   M  +G+E +  +F   V A A
Sbjct: 199 DAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAA 258

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               +  GK++H  +++ G   +  +  S++ MY +   ++ A + F+ M  KD+I+W  
Sbjct: 259 MQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTA 318

Query: 286 IIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I+G  ++  ++  + +F +M   R  P+  T  S++AACA L +   G  VH  I+R+ 
Sbjct: 319 MISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQR 378

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           +  ++   N+L+ MYAKCG++  S  +F  MS RD+V+W +++ G+  +GH  +A+ LF+
Sbjct: 379 IKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFN 438

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
           EM K+  RPD I  +++L AC+  G + +G      +    + P   I   +VD+  + G
Sbjct: 439 EMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCG 498

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            +  A +    MP + D   W  ++     H
Sbjct: 499 DLGSAQKCFDRMP-QQDLVSWSSIIAGYGSH 528



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 183/331 (55%), Gaps = 5/331 (1%)

Query: 100 FVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
           +  M+  +  P+A T  S++KAC  +   S+    H   I +G     Y+  SL++ Y+ 
Sbjct: 36  YSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRVIVDGYSSDSYIATSLINFYSK 95

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
              +  +AR VF+ M  +N V WTT+I  Y  +G       ++  M  +G++  P S ++
Sbjct: 96  FGHN-QSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQ--PSSVTM 152

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
                     V   + +HA VI++GFGS++ + NS+L++YC+   + DA   F+ M  +D
Sbjct: 153 LGLLSGVLELVHL-QCLHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARD 211

Query: 280 LITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           +I+WN++++GY + G+  E L +  +MK++   P+  TF S+++A A  + L  G+ VH 
Sbjct: 212 VISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHG 271

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
            I+R GL+ +  +  +LI MY KCGN++ + +IF  M  +D+++WT+M+ G   +     
Sbjct: 272 HILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADM 331

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
           A+ +F  M+KS V P      +VL AC+  G
Sbjct: 332 AVTVFRRMLKSRVMPSTATIASVLAACAELG 362



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 103/334 (30%), Positives = 177/334 (52%), Gaps = 7/334 (2%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S + T+LI  Y   G +  A  +F+ M  +DV+SWT MI+G    +C + A TVF  M++
Sbjct: 282 SHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLK 341

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           + V P+  T++SVL AC  + S      VHG  +++ ++  I  +NSL+ +YA C   ++
Sbjct: 342 SRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCG-HLE 400

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA--VRA 223
            +  VF+ M  ++ VSW  +++G+A +G+    L +F EM        P S ++   ++A
Sbjct: 401 QSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEM--RKARQRPDSITVVSLLQA 458

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           CAS G +  GK IH  V K   G  + +  +++DMY +   L  A + FD M ++DL++W
Sbjct: 459 CASIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSW 518

Query: 284 NTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ-VHAGIV 341
           ++IIAGY   G  E  L M+S        PN   + SI++AC+    +  G    H+   
Sbjct: 519 SSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTK 578

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEM 375
             G++  L     ++D+ ++ G + ++   +  M
Sbjct: 579 DFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRM 612



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 173/356 (48%), Gaps = 7/356 (1%)

Query: 181 SWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAV 240
           S+  +I   + +G     L  +  ML      + ++F   V+AC S    S G   H  V
Sbjct: 15  SYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRV 74

Query: 241 IKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CL 299
           I  G+ S+  +  S+++ Y +F     A + FD M +++++ W T+I  Y ++G  +   
Sbjct: 75  IVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAF 134

Query: 300 NMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMY 359
           +M++ M+ +   P+  T   +++    L  L C   +HA +++ G   ++ALAN+++++Y
Sbjct: 135 SMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQC---LHACVIQYGFGSDVALANSMLNVY 191

Query: 360 AKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFM 419
            KCG + D+Q +F  M  RD+++W S++ GY   G+ +E ++L   M   G+ PD+  F 
Sbjct: 192 CKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFG 251

Query: 420 AVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
           ++++A +    +  G      +    +  +  I   ++ +  + G V  A+ + + M  K
Sbjct: 252 SLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHK 311

Query: 480 PDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEF 535
            D   W  ++    ++   ++      R+  LK  +M +   ++++ AA  +   F
Sbjct: 312 -DVISWTAMISGLVQNDCADMAVTVFRRM--LKSRVMPSTATIASVLAACAELGSF 364


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 184/510 (36%), Positives = 291/510 (57%), Gaps = 9/510 (1%)

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           E NP   T   ++ +C    SLS+   VH   +  G +   ++   L+++Y     S+D 
Sbjct: 73  EPNPTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELG-SIDR 131

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA- 225
           AR VF++ + +    W  L    A  G G   L ++ +M   G+  + ++++  ++AC  
Sbjct: 132 ARKVFDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVV 191

Query: 226 ---STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
              S   +  GK IHA +++HG+ +N+ VM ++LD+Y +F  +S AN  F  M  K+ ++
Sbjct: 192 SELSVSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVS 251

Query: 283 WNTIIAGYEKSGSS-ECLNMFSKMKSERFS--PNCFTFTSIIAACATLAALSCGQQVHAG 339
           W+ +IA + K+    + L +F  M  E     PN  T  +++ ACA LAAL  G+ +H  
Sbjct: 252 WSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGY 311

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
           I+RRGLD  L + NALI MY +CG I   Q++F  M +RD+V+W S++  YG HG GK+A
Sbjct: 312 ILRRGLDSILPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGFGKKA 371

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVD 458
           I++F+ M+  G  P  I F+ VL ACSHAGLV+EG   F+SM + Y ++P  E Y C+VD
Sbjct: 372 IQIFENMIHQGSSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVD 431

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518
           LLGRA R+ EA +LI+ M F+P  +VWG LLG+C+ H    L + A+  + +L+P   G 
Sbjct: 432 LLGRANRLDEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTLLFELEPRNAGN 491

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
           Y++L++IYA    W E     K++   G +K  G SWIEV+ KV  F++ D+     + +
Sbjct: 492 YVLLADIYAEAKMWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEI 551

Query: 579 YGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           + +L  L   M    Y P  + +++DL+ E
Sbjct: 552 HALLVKLSNEMKAQGYVPQTNVVLYDLDEE 581



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 156/304 (51%), Gaps = 19/304 (6%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           LAT LI  Y++ G I+ AR +FDE  ER +  W  +        C  +   ++V+M    
Sbjct: 115 LATKLINMYYELGSIDRARKVFDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIG 174

Query: 108 VNPNAFTLSSVLKACK----GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           +  + FT + VLKAC      +  L     +H   ++ G E +I+V  +L+DVYA    S
Sbjct: 175 IPSDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFG-S 233

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI--AV 221
           +  A  VF  M  KN VSW+ +I  +A +      L +F+ M+LE  +  P S ++   +
Sbjct: 234 VSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVL 293

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
           +ACA    +  GKLIH  +++ G  S LPV+N+++ MY R   +    + FD M  +D++
Sbjct: 294 QACAGLAALEQGKLIHGYILRRGLDSILPVLNALITMYGRCGEILMGQRVFDNMKNRDVV 353

Query: 282 TWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           +WN++I+ Y   G   + + +F  M  +  SP+  +F +++ AC+           HAG+
Sbjct: 354 SWNSLISIYGMHGFGKKAIQIFENMIHQGSSPSYISFITVLGACS-----------HAGL 402

Query: 341 VRRG 344
           V  G
Sbjct: 403 VEEG 406


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 184/524 (35%), Positives = 303/524 (57%), Gaps = 5/524 (0%)

Query: 80  WTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAI 139
           W V +      +  +++ +++  M+R+  +P+AF+   +LK+C  +    +   +H    
Sbjct: 21  WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80

Query: 140 KEGLEGSIYVENSLMDVYATCCISMDNARLVF--NDMKWKNDVSWTTLITGYAHSGNGYG 197
           K G E   +V  +L+ +Y  C +  D AR VF  N    +  V +  LI+GY  +     
Sbjct: 81  KGGCETEPFVLTALISMYCKCGLVAD-ARKVFEENPQSSQLSVCYNALISGYTANSKVTD 139

Query: 198 GLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILD 257
              +F+ M   GV ++  +    V  C    ++  G+ +H   +K G  S + V+NS + 
Sbjct: 140 AAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFIT 199

Query: 258 MYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFT 316
           MY +   +    + FDEM  K LITWN +I+GY ++G + + L ++ +MKS    P+ FT
Sbjct: 200 MYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFT 259

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
             S++++CA L A   G +V   +   G   N+ ++NA I MYA+CGN++ ++ +F  M 
Sbjct: 260 LVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMP 319

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
            + LV+WT+M+  YG HG G+  + LFD+M+K G+RPD  VF+ VL+ACSH+GL D+GL+
Sbjct: 320 VKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLE 379

Query: 437 YFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            F++M  +Y + P  E Y C+VDLLGRAGR+ EA E I+SMP +PD +VWG LLGACK H
Sbjct: 380 LFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIH 439

Query: 496 RLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSW 555
           +  ++ +LA  +V++ +PN +G Y+++SNIY+     E   + R +MR    +K+ G S+
Sbjct: 440 KNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSY 499

Query: 556 IEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDID 599
           +E + +V  F+A D+    T+ V+ +L+ L   + E A   D D
Sbjct: 500 VEHKGRVHLFLAGDRSHEQTEEVHRMLDELETSVMELAGNMDCD 543



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 114/473 (24%), Positives = 213/473 (45%), Gaps = 58/473 (12%)

Query: 20  PIIKQSLQ-SVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVV 78
           P+  Q L   V K   +++P         + T LI  Y   GL+ +AR +F+E P+   +
Sbjct: 69  PVSGQQLHCHVTKGGCETEP--------FVLTALISMYCKCGLVADARKVFEENPQSSQL 120

Query: 79  S--WTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHG 136
           S  +  +I+GYT+ +    A  +F  M    V+ ++ T+  ++  C   + L     +HG
Sbjct: 121 SVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHG 180

Query: 137 MAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGY 196
             +K GL+  + V NS + +Y  C  S++  R +F++M  K  ++W  +I+GY+ +G  Y
Sbjct: 181 QCVKGGLDSEVAVLNSFITMYMKCG-SVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAY 239

Query: 197 GGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSIL 256
             L ++++M   GV  +P++    + +CA  G    G  +   V  +GF  N+ V N+ +
Sbjct: 240 DVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASI 299

Query: 257 DMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSEC-LNMFSKMKSERFSPNCF 315
            MY R   L+ A   FD M  K L++W  +I  Y   G  E  L +F  M      P+  
Sbjct: 300 SMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGA 359

Query: 316 TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA------------NALIDMYAKCG 363
            F  +++AC+           H+G+  +GL+   A+             + L+D+  + G
Sbjct: 360 VFVMVLSACS-----------HSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAG 408

Query: 364 NISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
            + ++ +    M  + D   W +++     H +   A   F ++++    P+ I +  ++
Sbjct: 409 RLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIE--FEPNNIGYYVLM 466

Query: 423 TACSHAGLVDEGLKYFKSMNDYNVNPNKE-IYGCVVDLLGRAGRVKEAYELIK 474
           +                  N Y+ + N+E I+   V +  RA R K  Y  ++
Sbjct: 467 S------------------NIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVE 501


>gi|147805932|emb|CAN74403.1| hypothetical protein VITISV_043633 [Vitis vinifera]
          Length = 841

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 184/558 (32%), Positives = 300/558 (53%), Gaps = 27/558 (4%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+  Y + G +E +  LF+ +P RD   W  MI+ Y +F CH +A  +F+ M    V  +
Sbjct: 303 LLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKD 362

Query: 112 AFTLSSVLKACKGMKS-LSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNARL 169
             T+  +L  C+ + S L     +H   IK G+     + N+L+ +Y    C+  ++ + 
Sbjct: 363 ERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMRIDASLGNALLSMYTELNCV--ESVQK 420

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           +F+ MK  + +SW T+I   A +        +F+ M    ++ N Y+    + AC     
Sbjct: 421 IFDRMKGVDIISWNTMILALARNTLRAQACELFERMRESEIKPNSYTIISILAACEDVTC 480

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           + FG+ IH  V+KH    N P+  ++ DMY      + A   F+   ++DLI+WN +I  
Sbjct: 481 LDFGRSIHGYVMKHSIEINQPLRTALADMYMNCGDEATARDLFEGCPDRDLISWNAMIXK 540

Query: 290 YEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG--LDG 347
            E                    PN  T  +++++   LA L  GQ +HA + RRG  L  
Sbjct: 541 AE--------------------PNSVTIINVLSSFTHLATLPQGQSLHAYVTRRGFSLGL 580

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           +L+LANA I MYA+CG++  ++ IF  +  R++++W +M+ GYG +G G +A+  F +M+
Sbjct: 581 DLSLANAFITMYARCGSLQSAENIFKTLPKRNIISWNAMIAGYGMNGRGSDAMLAFSQML 640

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRV 466
           + G RP+ + F++VL+ACSH+G ++ GL+ F SM  D+NV P    Y C+VDLL R G +
Sbjct: 641 EDGFRPNGVTFVSVLSACSHSGFIEMGLQLFHSMVQDFNVTPELVHYSCIVDLLARGGCI 700

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            EA E I SMP +PD SVW  LL +C+ +      K    ++  L+P   G Y++LSN+Y
Sbjct: 701 DEAREFIDSMPIEPDASVWRALLSSCRAYSDAKQAKTIFEKLDKLEPMNAGNYVLLSNVY 760

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           A  G W E  + R  ++  G +K  G+SWI V+++V  F A D+    +  +Y  L +L+
Sbjct: 761 ATAGLWLEVRRIRTWLKEKGLRKPPGISWIIVKNQVHCFSAGDRSHPQSDKIYAKLSILL 820

Query: 587 RHMNETAYEPDIDCLIHD 604
             M ET Y+PD+  + H+
Sbjct: 821 SSMRETGYDPDLRWVFHE 838



 Score =  231 bits (590), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 132/470 (28%), Positives = 246/470 (52%), Gaps = 6/470 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + T ++  Y   G +E+AR +FD M +RDVV W  M+ GY  + C+ +A  +  EM R  
Sbjct: 97  VGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMGREN 156

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGL-EGSIYVENSLMDVYATCCISMDN 166
           + PN+ T+ ++L AC+G   L     VHG  ++ G+ + + +V  +L+  Y      M  
Sbjct: 157 LRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLR--FDMRV 214

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
             L+F+ M  +N VSW  +I+GY   G+ +  L +F +ML++ V+ +  +  +AV+ACA 
Sbjct: 215 LPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAE 274

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G +  GK IH   IK  F  +L ++N++L+MY     L  ++Q F+ +  +D   WN++
Sbjct: 275 LGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSM 334

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAA-LSCGQQVHAGIVRRG 344
           I+ Y   G   E +++F +M+SE    +  T   +++ C  LA+ L  G+ +HA +++ G
Sbjct: 335 ISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSG 394

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           +  + +L NAL+ MY +   +   QKIF  M   D+++W +M++    +    +A ELF+
Sbjct: 395 MRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFE 454

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
            M +S ++P+    +++L AC     +D G      +  +++  N+ +   + D+    G
Sbjct: 455 RMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCG 514

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514
               A +L +  P + D   W  ++   + + +  +  L++   L   P 
Sbjct: 515 DEATARDLFEGCPDR-DLISWNAMIXKAEPNSVTIINVLSSFTHLATLPQ 563



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 113/466 (24%), Positives = 207/466 (44%), Gaps = 41/466 (8%)

Query: 75  RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALV 134
           +D   W  +I    +        + + +M    V PN  TL  VLKAC    ++     +
Sbjct: 23  KDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKSI 82

Query: 135 HGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGN 194
           H       L   + V  +++D Y  C   +++AR VF+ M  ++ V W  ++ GY   G 
Sbjct: 83  HRSIQGTDLMDDVRVGTAVVDFYCKCGF-VEDARCVFDAMSDRDVVLWNAMVYGYVGWGC 141

Query: 195 GYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG-FGSNLPVMN 253
               + + +EM  E +  N  +    + AC     +  G+ +H   +++G F SN  V  
Sbjct: 142 YEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVAT 201

Query: 254 SILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSP 312
           +++  Y RFD +      FD M  +++++WN +I+GY   G   + L +F +M  +    
Sbjct: 202 ALIGFYLRFD-MRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKF 260

Query: 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIF 372
           +C T    + ACA L +L  G+Q+H   ++     +L + NAL++MY+  G++  S ++F
Sbjct: 261 DCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLF 320

Query: 373 SEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS------ 426
             + +RD   W SM+  Y A G  +EA++LF  M   GV+ D    + +L+ C       
Sbjct: 321 ESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGL 380

Query: 427 ------HAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK------------- 467
                 HA ++  G++   S+ +  ++   E+  CV  +     R+K             
Sbjct: 381 LKGKSLHAHVIKSGMRIDASLGNALLSMYTEL-NCVESVQKIFDRMKGVDIISWNTMILA 439

Query: 468 -----------EAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGK 502
                      E +E ++    KP+      +L AC++    + G+
Sbjct: 440 LARNTLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGR 485



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 164/333 (49%), Gaps = 6/333 (1%)

Query: 163 SMDNARLVFNDMKW--KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
           SM   RL  +  K   K+   W ++I   A+  N    L  + +M   GV  N  +  + 
Sbjct: 7   SMGLQRLTLSPTKIQIKDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLV 66

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           ++ACA+   V  GK IH ++       ++ V  +++D YC+   + DA   FD M+++D+
Sbjct: 67  LKACAAQNAVERGKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDV 126

Query: 281 ITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           + WN ++ GY   G   E + +  +M  E   PN  T  +++ AC   + L  G+ VH  
Sbjct: 127 VLWNAMVYGYVGWGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGY 186

Query: 340 IVRRGL-DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
            +R G+ D N  +A ALI  Y +  ++     +F  M  R++V+W +M+ GY   G   +
Sbjct: 187 CLRNGMFDSNPHVATALIGFYLRF-DMRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFK 245

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVD 458
           A+ELF +M+   V+ D +  +  + AC+  G +  G +  +    +    +  I   +++
Sbjct: 246 ALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLN 305

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
           +    G ++ +++L +S+P + D  +W  ++ A
Sbjct: 306 MYSNNGSLESSHQLFESVPNR-DAPLWNSMISA 337



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 9/193 (4%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           LA   I  Y   G ++ A  +F  +P+R+++SW  MIAGY      + A   F +M+ + 
Sbjct: 584 LANAFITMYARCGSLQSAENIFKTLPKRNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDG 643

Query: 108 VNPNAFTLSSVLKACKGMKSLS-NAALVHGMAIKEGLEGSIYVENSLMDVYAT-CCISMD 165
             PN  T  SVL AC     +     L H M     +   +   + ++D+ A   CI  D
Sbjct: 644 FRPNGVTFVSVLSACSHSGFIEMGLQLFHSMVQDFNVTPELVHYSCIVDLLARGGCI--D 701

Query: 166 NARLVFNDMKWKNDVS-WTTLITGYAHSGNGYGGLGVFKEMLLEGVE-MNPYSFSIAVRA 223
            AR   + M  + D S W  L++      +      +F++  L+ +E MN  ++ +    
Sbjct: 702 EAREFIDSMPIEPDASVWRALLSSCRAYSDAKQAKTIFEK--LDKLEPMNAGNYVLLSNV 759

Query: 224 CASTG-WVSFGKL 235
            A+ G W+   ++
Sbjct: 760 YATAGLWLEVRRI 772


>gi|224145066|ref|XP_002325515.1| predicted protein [Populus trichocarpa]
 gi|222862390|gb|EEE99896.1| predicted protein [Populus trichocarpa]
          Length = 683

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 196/587 (33%), Positives = 314/587 (53%), Gaps = 40/587 (6%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +L   L+  Y    L+ +A T+       + + W ++I+ Y +   H +A + + EMV  
Sbjct: 77  VLVPKLVTFYSSFSLLADAHTITVNSDIVNPLPWNLLISSYVNNGLHGEALSAYREMVHK 136

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVH-GMAIKEGLEGSIYVENSLMDVYATCCISMD 165
            V P+ FT  SVLKAC     L     VH  +    G   ++YV NSL+ +Y      +D
Sbjct: 137 GVRPDNFTYPSVLKACGEKLDLDFGREVHESINAAYGHRWNLYVHNSLVSMYGKFG-ELD 195

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMN------------ 213
            AR +FN M  ++ VSW  +I+ YA  G       +F+EM L G E+N            
Sbjct: 196 AARRLFNQMPERDAVSWNGIISNYASRGLWKEAFELFEEMRLAGAEVNIITWNTIAGGCV 255

Query: 214 -----------------------PYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLP 250
                                  P +  I + AC+  G +  G +IHA+ I+  F     
Sbjct: 256 QTRNFKGALELLSQMRRCDIDLDPVAMIIGLGACSHIGAIKLGTVIHASAIRSCFDGFDN 315

Query: 251 VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLN-MFSKMKSER 309
           V N+++ MY R   L  A+  F  +  K L TWN++++GY     SE  + +F +M    
Sbjct: 316 VRNALITMYSRCKDLRHADILFKSIKTKSLTTWNSMLSGYTHMDRSEEASFLFREMLFSG 375

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-GLDGNLALANALIDMYAKCGNISDS 368
             PN  T  SI+  CA +A L  G++ H  I+RR G +  L L N+L++MYA+ G +  +
Sbjct: 376 IEPNYVTIASILPHCARVANLQQGKEFHCYIMRREGFEDYLLLWNSLVEMYARSGKVLSA 435

Query: 369 QKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHA 428
           +++F  +  RD VT+TS++ GYG  G GK A++LFDEM+K  ++PD++  +AVL+ACSH+
Sbjct: 436 KRVFDSLRRRDKVTYTSLIAGYGIQGEGKTALKLFDEMIKHRIKPDQVTMVAVLSACSHS 495

Query: 429 GLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGP 487
           GLV EG   F+ M+  Y + P  E + C+VDL GRAG + +A ++I SMP++P  ++W  
Sbjct: 496 GLVTEGNVLFEKMSTLYGIVPAVEHFSCMVDLFGRAGLLNKAKKVITSMPYRPTTAMWAT 555

Query: 488 LLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547
           L+GAC+ H    +G+ AA ++L++KP   G Y++++N++AA G+W + A+ R  MR +G 
Sbjct: 556 LVGACRIHGNTEIGEWAAEKLLEMKPENPGYYVLIANMHAAAGRWSKLAEVRTYMRDLGV 615

Query: 548 KKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAY 594
           +K  G +W++V      F+  D    ++  +Y +LE L   M +  Y
Sbjct: 616 RKAPGCTWVDVGSGFSPFVVGDTSKHNSNDLYELLEGLTDLMKDAGY 662



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 113/459 (24%), Positives = 212/459 (46%), Gaps = 60/459 (13%)

Query: 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFND 173
           ++SS+L +C  +KSL     +H   I  G E  + +   L+  Y++  +  D   +  N 
Sbjct: 43  SISSLLYSCTNLKSLPQGKQLHAHTISLGFENHLVLVPKLVTFYSSFSLLADAHTITVNS 102

Query: 174 MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG 233
               N + W  LI+ Y ++G     L  ++EM+ +GV  + +++   ++AC     + FG
Sbjct: 103 -DIVNPLPWNLLISSYVNNGLHGEALSAYREMVHKGVRPDNFTYPSVLKACGEKLDLDFG 161

Query: 234 KLIHAAV-IKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEK 292
           + +H ++   +G   NL V NS++ MY +F  L  A + F++M E+D ++WN II+ Y  
Sbjct: 162 REVHESINAAYGHRWNLYVHNSLVSMYGKFGELDAARRLFNQMPERDAVSWNGIISNYAS 221

Query: 293 SGS-SECLNMFSKMKSERFSPNCFTFTSI------------------------------- 320
            G   E   +F +M+      N  T+ +I                               
Sbjct: 222 RGLWKEAFELFEEMRLAGAEVNIITWNTIAGGCVQTRNFKGALELLSQMRRCDIDLDPVA 281

Query: 321 ----IAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
               + AC+ + A+  G  +HA  +R   DG   + NALI MY++C ++  +  +F  + 
Sbjct: 282 MIIGLGACSHIGAIKLGTVIHASAIRSCFDGFDNVRNALITMYSRCKDLRHADILFKSIK 341

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
            + L TW SM+ GY      +EA  LF EM+ SG+ P+ +   ++L  C+    + +G +
Sbjct: 342 TKSLTTWNSMLSGYTHMDRSEEASFLFREMLFSGIEPNYVTIASILPHCARVANLQQGKE 401

Query: 437 YF------KSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490
           +       +   DY +     ++  +V++  R+G+V  A  +  S+  + D+  +  L+ 
Sbjct: 402 FHCYIMRREGFEDYLL-----LWNSLVEMYARSGKVLSAKRVFDSLR-RRDKVTYTSLIA 455

Query: 491 ACKEHRLPNLGKLAALRVLD------LKPNMMGTYIILS 523
               + +   GK  AL++ D      +KP+ +    +LS
Sbjct: 456 G---YGIQGEGK-TALKLFDEMIKHRIKPDQVTMVAVLS 490



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 122/244 (50%), Gaps = 4/244 (1%)

Query: 215 YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE 274
           +S S  + +C +   +  GK +HA  I  GF ++L ++  ++  Y  F  L+DA+     
Sbjct: 42  HSISSLLYSCTNLKSLPQGKQLHAHTISLGFENHLVLVPKLVTFYSSFSLLADAHTITVN 101

Query: 275 MTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG 333
               + + WN +I+ Y  +G   E L+ + +M  +   P+ FT+ S++ AC     L  G
Sbjct: 102 SDIVNPLPWNLLISSYVNNGLHGEALSAYREMVHKGVRPDNFTYPSVLKACGEKLDLDFG 161

Query: 334 QQVHAGI-VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA 392
           ++VH  I    G   NL + N+L+ MY K G +  ++++F++M +RD V+W  ++  Y +
Sbjct: 162 REVHESINAAYGHRWNLYVHNSLVSMYGKFGELDAARRLFNQMPERDAVSWNGIISNYAS 221

Query: 393 HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN--DYNVNPNK 450
            G  KEA ELF+EM  +G   + I +  +   C         L+    M   D +++P  
Sbjct: 222 RGLWKEAFELFEEMRLAGAEVNIITWNTIAGGCVQTRNFKGALELLSQMRRCDIDLDPVA 281

Query: 451 EIYG 454
            I G
Sbjct: 282 MIIG 285


>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Vitis vinifera]
          Length = 635

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 207/566 (36%), Positives = 323/566 (57%), Gaps = 28/566 (4%)

Query: 43  KGPSILA-TNLIKSYFDEGLIEEARTLFDEM-PERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           + P ++  T +I  Y   G+IEEAR LFD +  +++VV+WT M+ GY   N  + A  +F
Sbjct: 79  REPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLF 138

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGL-EGSIYVENSLMDVYAT 159
            EM     N N  + ++++          N  +   M + E + E ++   N++M + A 
Sbjct: 139 NEMP----NKNVVSWNTMIDGYA-----QNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQ 189

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
           C   ++ AR +F+ M  ++ +SWT +I G + +G       +F  M     E N  S++ 
Sbjct: 190 CG-RIEEARRLFDRMPERDVISWTAMIAGLSKNGRIDEARLLFDRM----PERNVVSWNA 244

Query: 220 AVRACASTGWVSFGKLIHAA-VIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK 278
            +     TG+    +L  A  + +     +LP  N+++    +   L  A + F+EM +K
Sbjct: 245 MI-----TGYAQNLRLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKK 299

Query: 279 DLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFS-PNCFTFTSIIAACATLAALSCGQQV 336
           ++I+W T+I G  + G SE  L +FS+M S   + PN  TF S++ AC+ LA L  GQQV
Sbjct: 300 NVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQV 359

Query: 337 HAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSE--MSDRDLVTWTSMMIGYGAHG 394
           H  I +     +  + +ALI+MY+KCG +  ++K+F +   S RDLV+W  ++  Y  HG
Sbjct: 360 HQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHG 419

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIY 453
           +GKEAI  F EM KSG +PD + ++ +L+ACSHAGLV+EGLKYF  +  D ++   ++ Y
Sbjct: 420 YGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHY 479

Query: 454 GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513
            C+VDL GRAGR+KEA+  I+ +  KP   VWG LL  C  H    +GK AA ++L+++P
Sbjct: 480 ACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKIGKQAAKKLLEVEP 539

Query: 514 NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGS 573
              GTY++LSNIYA+ GKW E A+ R  M+  G KK+ G SWIEV ++V  F+  DK  S
Sbjct: 540 ENAGTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQPGCSWIEVGNRVHVFVVGDKSHS 599

Query: 574 HTQYVYGVLEMLIRHMNETAYEPDID 599
            ++ +Y +L  L   M +  YEP+ D
Sbjct: 600 QSKLIYSLLRDLHSKMKKAGYEPNND 625



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 176/382 (46%), Gaps = 77/382 (20%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P+   I  T +I      G I+EAR LFD MPER+VVSW  MI GY      ++A  +F
Sbjct: 203 MPERDVISWTAMIAGLSKNGRIDEARLLFDRMPERNVVSWNAMITGYAQNLRLDEALDLF 262

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
             M   ++ P+  T+ + L                   I+ G                  
Sbjct: 263 ERMPERDL-PSWNTMITGL-------------------IQNG------------------ 284

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEML-LEGVEMNPYSFSI 219
              +  AR +FN+M  KN +SWTT+ITG    G     L +F  ML   G + N  +F  
Sbjct: 285 --DLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVS 342

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE--MTE 277
            + AC++   +  G+ +H  + K  +  +  V++++++MY +   L  A + FD+   ++
Sbjct: 343 VLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQ 402

Query: 278 KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQV 336
           +DL++WN IIA Y   G   E +N F +M+   F P+  T+  +++AC+           
Sbjct: 403 RDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACS----------- 451

Query: 337 HAGIVRRGL--------DGNLALAN----ALIDMYAKCGNISDS----QKIFSEMSDRDL 380
           HAG+V  GL        D ++ +       L+D+  + G + ++    +++ ++ S R  
Sbjct: 452 HAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSAR-- 509

Query: 381 VTWTSMMIGYGAHGH---GKEA 399
             W +++ G   H +   GK+A
Sbjct: 510 -VWGALLAGCNVHANVKIGKQA 530



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 83/181 (45%), Gaps = 32/181 (17%)

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           +DGN+A  N +I   +K G I +++++F EM + D++TWT+++ GY   G  +EA  LFD
Sbjct: 48  VDGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFD 107

Query: 405 E------------MVKSGVRPDRI----------------VFMAVLTACSHAGLVDEGLK 436
                        MV   +R ++I                 +  ++   +  G +D  + 
Sbjct: 108 RVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMY 167

Query: 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR 496
            F+ M + NV      +  V+ +L + GR++EA  L   MP +   S    + G  K  R
Sbjct: 168 LFEKMPERNVVS----WNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLSKNGR 223

Query: 497 L 497
           +
Sbjct: 224 I 224


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 190/509 (37%), Positives = 293/509 (57%), Gaps = 18/509 (3%)

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M+R+  +PNAFT    +K+C  +        +H    K G     +V+ SL+ +Y  C +
Sbjct: 1   MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSL 60

Query: 163 SMDNARLVF--NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
            +DNAR +F  N    K  V + +L++GYA +      + +F EM   GVE+N  +    
Sbjct: 61  -IDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGL 119

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           V+ C   G +  G  +H   +K G   +  V N +L MY +   +    + FDEM  K L
Sbjct: 120 VQPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGL 179

Query: 281 ITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           ITWN +I GY ++G ++  L ++ +M+S+ F P+  T   ++++CA L ALS G++V   
Sbjct: 180 ITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERK 239

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
           +   G   N  L NAL++MYA+CGN+  ++ IF  M  + +V+WT+++ GYG HG G+ A
Sbjct: 240 MEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVA 299

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVD 458
           + LFDEM++ G++PD   F++VL+ACSHAGL ++GL YF  M   Y + P  E Y C+VD
Sbjct: 300 VGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMVD 359

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518
           LLGRAGR+ EA ELI+SM  + D ++WG LLGACK HR   L +LA  +V++L+P   G 
Sbjct: 360 LLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELAELAFEQVIELEPTNTGY 419

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
           Y++LSN+Y   G  E   + R +MR    KK+ G S++E + +V  F A D+    T  +
Sbjct: 420 YVLLSNVYTEAGNLEGILRVRMLMRKRKLKKDPGCSYVEFKGRVHLFFAGDRNHPQTNEI 479

Query: 579 YGVLEMLIRHMNETAYEPDIDCLIHDLEG 607
           Y       + +NE      ++ L+ DL+G
Sbjct: 480 Y-------KKLNE------LENLVKDLDG 495



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 180/368 (48%), Gaps = 8/368 (2%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPE--RDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
            + T+LI  Y    LI+ AR LFDE P+  +  V +  +++GY   +       +F EM 
Sbjct: 46  FVQTSLISMYGKCSLIDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMR 105

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
              V  N  T+  +++ C    +L     VHG  +K GL+    V N L+ +Y      +
Sbjct: 106 ELGVEINGVTMLGLVQPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSG-EI 164

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           D  R +F++M  K  ++W  +I GYA +G     L ++KEM  +G   +P +    + +C
Sbjct: 165 DCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSC 224

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           A  G +S GK +   +   GF SN  + N++++MY R   L  A   FD M  K +++W 
Sbjct: 225 AHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWT 284

Query: 285 TIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            II GY   G  E  + +F +M      P+   F S+++AC+  A L+     + G++ R
Sbjct: 285 AIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSH-AGLTNKGLDYFGVMER 343

Query: 344 --GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHGHGKEAI 400
             GL       + ++D+  + G +++++++   M  R D   W +++     H + + A 
Sbjct: 344 KYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELAE 403

Query: 401 ELFDEMVK 408
             F+++++
Sbjct: 404 LAFEQVIE 411


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 184/502 (36%), Positives = 302/502 (60%), Gaps = 8/502 (1%)

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           PN FT SS+L A      + +   +H +  K G + +I+V  +L+D+YA C   M +A  
Sbjct: 8   PNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCA-DMHSAVR 66

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEM-NPYSFSIAVRACASTG 228
           VF+ M  +N VSW ++I G+ H+      +GVFK++L E   + N  S S  + ACA+ G
Sbjct: 67  VFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMG 126

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMY--CRFDCLSDANQYFDEMTEKDLITWNTI 286
            ++FG+ +H  V+K G      VMNS++DMY  CRF    +  + F  + ++D++TWN +
Sbjct: 127 GLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRF--FDEGVKLFQCVGDRDVVTWNVL 184

Query: 287 IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           + G+ ++    E  N F  M+ E   P+  +F++++ + A+LAAL  G  +H  I++ G 
Sbjct: 185 VMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGY 244

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             N+ +  +LI MYAKCG++ D+ ++F  + D ++++WT+M+  Y  HG   + IELF+ 
Sbjct: 245 VKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEH 304

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAG 464
           M+  G+ P  + F+ VL+ACSH G V+EGL +F SM   +++NP  E Y C+VDLLGRAG
Sbjct: 305 MLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAG 364

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
            + EA   I+SMP KP  SVWG LLGAC+++    +G+ AA R+ +++P   G Y++L+N
Sbjct: 365 WLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLAN 424

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           +    G+ EE  + R++M   G +KE G SWI+V++    F A+D+  S +  +Y +LE 
Sbjct: 425 MCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDEIYKMLEK 484

Query: 585 LIRHMNETAYEPDIDCLIHDLE 606
           L + + +  Y  + + + + LE
Sbjct: 485 LEKLVKKKGYVAETEFVTNHLE 506



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 118/417 (28%), Positives = 207/417 (49%), Gaps = 17/417 (4%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + T L+  Y     +  A  +FD+MPER++VSW  MI G+   N +++A  VF +++R 
Sbjct: 46  FVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLRE 105

Query: 107 E-VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           + V PN  ++SSVL AC  M  L+    VHG+ +K GL    YV NSLMD+Y  C    D
Sbjct: 106 KTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRF-FD 164

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
               +F  +  ++ V+W  L+ G+  +         F  M  EG+  +  SFS  + + A
Sbjct: 165 EGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSA 224

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           S   +  G  IH  +IK G+  N+ ++ S++ MY +   L DA Q F+ + + ++I+W  
Sbjct: 225 SLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTA 284

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I+ Y+  G +++ + +F  M SE   P+  TF  +++AC+    +  G   H   +++ 
Sbjct: 285 MISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEG-LAHFNSMKKI 343

Query: 345 LDGNLALAN--ALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIG----YGAHGHGKE 398
            D N    +   ++D+  + G + ++++    M  +   +    ++G    YG    G+E
Sbjct: 344 HDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGRE 403

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455
           A E   EM      P   V +A    C+ +G ++E  +  + M    VN  ++  GC
Sbjct: 404 AAERLFEM--EPYNPGNYVLLA--NMCTRSGRLEEANEVRRLM---GVNGVRKEPGC 453



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 170/325 (52%), Gaps = 14/325 (4%)

Query: 205 MLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264
           M   G   N ++FS  + A A+T  V  G+ +H+ + KHGF +N+ V  +++DMY +   
Sbjct: 1   MRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCAD 60

Query: 265 LSDANQYFDEMTEKDLITWNTIIAG-YEKSGSSECLNMFSKMKSER-FSPNCFTFTSIIA 322
           +  A + FD+M E++L++WN++I G +  +     + +F  +  E+   PN  + +S+++
Sbjct: 61  MHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLS 120

Query: 323 ACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVT 382
           ACA +  L+ G+QVH  +V+ GL     + N+L+DMY KC    +  K+F  + DRD+VT
Sbjct: 121 ACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVT 180

Query: 383 WTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN 442
           W  +++G+  +   +EA   F  M + G+ PD   F  VL + +    + +G      + 
Sbjct: 181 WNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQII 240

Query: 443 DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESV--WGPLLGACKEHRLPNL 500
                 N  I G ++ +  + G + +AY++ + +    D +V  W  ++ A + H   N 
Sbjct: 241 KLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGI---EDHNVISWTAMISAYQLHGCAN- 296

Query: 501 GKLAALRVLDLKPNMMGTYIILSNI 525
                 +V++L  +M+   I  S++
Sbjct: 297 ------QVIELFEHMLSEGIEPSHV 315


>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 188/523 (35%), Positives = 305/523 (58%), Gaps = 13/523 (2%)

Query: 94  NQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSL 153
           NQA  V  +    E NP   T   ++ +C    SL     +H   I +G +   ++   L
Sbjct: 64  NQALQVLSQ----EPNPTQHTYELLILSCTRQNSLPQGIDLHRHLIHDGSDQDPFLATKL 119

Query: 154 MDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMN 213
           +++Y+    S+DNAR VF+  + +    W  L      +G G   L +++ M   GV  +
Sbjct: 120 INMYSEL-DSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVLDLYRRMNRIGVPSD 178

Query: 214 PYSFSIAVRAC-ASTGWVSF---GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDAN 269
            ++++  ++AC AS  +VS    G+ IH  +++HGF  ++ +M ++LDMY RF C+ +A+
Sbjct: 179 RFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFEGHVHIMTTLLDMYARFGCVLNAS 238

Query: 270 QYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKM--KSERFSPNCFTFTSIIAACAT 326
           + FD+M  K++++W+ +IA Y K+G   E L +F KM  +++   PN  T  S++ ACA 
Sbjct: 239 RVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLPNSVTMVSVLQACAA 298

Query: 327 LAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSM 386
           LAAL  G+ +H  I+RRGLD  L + +AL+ +YA+CGN+    ++F  M  RD+V+W S+
Sbjct: 299 LAALEQGKLMHGYILRRGLDSILPVVSALVTVYARCGNLELGHRVFERMEKRDVVSWNSL 358

Query: 387 MIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYN 445
           +  YG HG G++AI++F EM+  G+ P  I F++VL ACSHAGLV+EG   F+SM   + 
Sbjct: 359 ISSYGIHGFGRKAIQIFKEMIDQGLSPSPISFVSVLGACSHAGLVEEGKVLFESMVRGHK 418

Query: 446 VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAA 505
           + P+ E Y C+VDLLGRA R+ EA ++I  M  +P   VWG LLG+C+ H    L + A 
Sbjct: 419 IFPSVEHYACMVDLLGRANRLDEAAKIIDDMRIEPGPKVWGSLLGSCRIHCNVELAERAT 478

Query: 506 LRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGF 565
            R+ +L+P   G Y++L++IYA    W E  + + ++   G +K  G S IE+R K+  F
Sbjct: 479 SRLFELEPTNAGNYVLLADIYAEAKMWNEVKRVKMLLEARGLQKVPGRSCIEIRRKIYSF 538

Query: 566 IANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           ++ D+     + ++ +L  L   M E  Y PD   +++DL+ E
Sbjct: 539 MSVDEFNPQIEQLHALLLKLSMEMKEKGYVPDTKVVLYDLDPE 581



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 181/338 (53%), Gaps = 13/338 (3%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           LAT LI  Y +   I+ AR +FD+  +R +  W  +    T      +   ++  M R  
Sbjct: 115 LATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVLDLYRRMNRIG 174

Query: 108 VNPNAFTLSSVLKACKGMKS----LSNAALVHGMAIKEGLEGSIYVENSLMDVYAT--CC 161
           V  + FT + VLKAC   ++    L N   +HG  ++ G EG +++  +L+D+YA   C 
Sbjct: 175 VPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFEGHVHIMTTLLDMYARFGCV 234

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI-- 219
           +   NA  VF+ M  KN VSW+ +I  Y+ +G     L +F++M+LE  ++ P S ++  
Sbjct: 235 L---NASRVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLPNSVTMVS 291

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
            ++ACA+   +  GKL+H  +++ G  S LPV+++++ +Y R   L   ++ F+ M ++D
Sbjct: 292 VLQACAALAALEQGKLMHGYILRRGLDSILPVVSALVTVYARCGNLELGHRVFERMEKRD 351

Query: 280 LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           +++WN++I+ Y   G   + + +F +M  +  SP+  +F S++ AC+    +  G+ +  
Sbjct: 352 VVSWNSLISSYGIHGFGRKAIQIFKEMIDQGLSPSPISFVSVLGACSHAGLVEEGKVLFE 411

Query: 339 GIVR-RGLDGNLALANALIDMYAKCGNISDSQKIFSEM 375
            +VR   +  ++     ++D+  +   + ++ KI  +M
Sbjct: 412 SMVRGHKIFPSVEHYACMVDLLGRANRLDEAAKIIDDM 449



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 168/345 (48%), Gaps = 27/345 (7%)

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP--YSF 217
           CC+++  +    ++    N+     LI      GN    L V  +      E NP  +++
Sbjct: 31  CCLALRPSTTTRSNGDSNNN---NPLIQSLCKQGNLNQALQVLSQ------EPNPTQHTY 81

Query: 218 SIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE 277
            + + +C     +  G  +H  +I  G   +  +   +++MY   D + +A + FD+  +
Sbjct: 82  ELLILSCTRQNSLPQGIDLHRHLIHDGSDQDPFLATKLINMYSELDSIDNARKVFDKTRK 141

Query: 278 KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAAC----ATLAALSC 332
           + +  WN +      +G   E L+++ +M       + FT+T ++ AC    A ++ L  
Sbjct: 142 RTIYVWNALFRALTLAGYGREVLDLYRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLN 201

Query: 333 GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA 392
           G+++H  I+R G +G++ +   L+DMYA+ G + ++ ++F +M  +++V+W++M+  Y  
Sbjct: 202 GREIHGHILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSK 261

Query: 393 HGHGKEAIELFDEMV--KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK 450
           +G   EA+ELF +M+     + P+ +  ++VL AC+    +++G    K M+ Y +    
Sbjct: 262 NGKPLEALELFRKMMLENQDLLPNSVTMVSVLQACAALAALEQG----KLMHGYILRRGL 317

Query: 451 E----IYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
           +    +   +V +  R G ++  + + + M  K D   W  L+ +
Sbjct: 318 DSILPVVSALVTVYARCGNLELGHRVFERME-KRDVVSWNSLISS 361



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 108/240 (45%), Gaps = 14/240 (5%)

Query: 284 NTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           N +I    K G+   LN   ++ S+  +P   T+  +I +C    +L  G  +H  ++  
Sbjct: 51  NPLIQSLCKQGN---LNQALQVLSQEPNPTQHTYELLILSCTRQNSLPQGIDLHRHLIHD 107

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G D +  LA  LI+MY++  +I +++K+F +   R +  W ++       G+G+E ++L+
Sbjct: 108 GSDQDPFLATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVLDLY 167

Query: 404 DEMVKSGVRPDRIVFMAVLTAC----SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL 459
             M + GV  DR  +  VL AC    +   L+  G +    +  +    +  I   ++D+
Sbjct: 168 RRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFEGHVHIMTTLLDM 227

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVL-----DLKPN 514
             R G V  A  +   MP K   S W  ++ AC       L  L   R +     DL PN
Sbjct: 228 YARFGCVLNASRVFDQMPVKNVVS-WSAMI-ACYSKNGKPLEALELFRKMMLENQDLLPN 285


>gi|297834550|ref|XP_002885157.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330997|gb|EFH61416.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 655

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 188/518 (36%), Positives = 294/518 (56%), Gaps = 10/518 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + T L+  Y   G ++ A  +FDEMP+RD+V+W  MI+G++   C      +F++M R++
Sbjct: 140 VCTALVDFYAKCGELDMAIKVFDEMPKRDIVAWNAMISGFSLHCCLTDVIGLFLDMRRSD 199

Query: 108 -VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMD 165
            ++PN  T+  +  A     +L     VHG   + G    + V+  ++DVYA   CI   
Sbjct: 200 CLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIY- 258

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG--VEMNPYSFSIAVRA 223
            AR VF+    KN+V+W+ +I GY  +        VF +ML+      + P +  + +  
Sbjct: 259 -ARRVFDSDFKKNEVTWSAMIGGYVENEMIKEAGEVFLQMLVNADMAMVTPVAIGLILMG 317

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           CA  G +S G+ +H   IK GF  +L V N+++  Y ++  L DA + F E+  KD++++
Sbjct: 318 CARFGDLSGGRCVHCYAIKAGFILDLTVGNTVISFYAKYGSLCDAFRQFTEIGLKDIVSY 377

Query: 284 NTIIAG-YEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N++I+G  E   + E   +F +MKS    P+  T   I+ AC+ LAAL  G   H   V 
Sbjct: 378 NSLISGCVENCRAEESFRLFHQMKSSGIRPDITTLLGILTACSNLAALGHGSSCHGYCVV 437

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            G   N ++ NAL+DMY KCG +  ++++F  M  RD+V+W +M+ G+G HG GKEA+ L
Sbjct: 438 NGYAVNTSICNALMDMYTKCGKLYVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEALSL 497

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN--DYNVNPNKEIYGCVVDLL 460
           F+ M  +GV PD +  +A+L+ACSH+GLVDEG + F SM+  D+NV P  + Y C+ DLL
Sbjct: 498 FNSMQDTGVHPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRLDHYNCMTDLL 557

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520
            RAG + EAY+ +  MPF+PD  V G LL AC  ++   LG   + ++  L      + +
Sbjct: 558 ARAGYLDEAYDFVNKMPFEPDIRVLGTLLSACWTYKNVELGNEVSKKMQSLGET-TESLV 616

Query: 521 ILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEV 558
           +LSN Y+A  +WE+ AK R   +  G  K  G SW++V
Sbjct: 617 LLSNTYSAAERWEDAAKIRMTQKKSGLLKTPGYSWVDV 654



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 129/455 (28%), Positives = 224/455 (49%), Gaps = 18/455 (3%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDV--VSWTVMIAGYTSFNCHNQAWTVFVEM 103
           S +  NL + Y     +E AR +FDE+P   +  ++W +MI  Y S     +A  ++ +M
Sbjct: 35  STVLVNLTRLYASCNEVELARHVFDEIPHPRINPIAWDLMIRAYVSNGFAEKALDLYYKM 94

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           + + V P  FT   VLKAC G++++ +  L+H           +YV  +L+D YA C   
Sbjct: 95  LNSGVRPTKFTYPFVLKACAGLRAIEDGKLIHSHVKCSNFAADMYVCTALVDFYAKCG-E 153

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA--V 221
           +D A  VF++M  ++ V+W  +I+G++        +G+F +M      ++P   +I    
Sbjct: 154 LDMAIKVFDEMPKRDIVAWNAMISGFSLHCCLTDVIGLFLDMRRSDC-LSPNLSTIVGMF 212

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
            A    G +  GK +H    + GF ++L V   ILD+Y +  C+  A + FD   +K+ +
Sbjct: 213 PALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDSDFKKNEV 272

Query: 282 TWNTIIAGYE-----KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQV 336
           TW+ +I GY      K      L M         +P       I+  CA    LS G+ V
Sbjct: 273 TWSAMIGGYVENEMIKEAGEVFLQMLVNADMAMVTP--VAIGLILMGCARFGDLSGGRCV 330

Query: 337 HAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHG 396
           H   ++ G   +L + N +I  YAK G++ D+ + F+E+  +D+V++ S++ G   +   
Sbjct: 331 HCYAIKAGFILDLTVGNTVISFYAKYGSLCDAFRQFTEIGLKDIVSYNSLISGCVENCRA 390

Query: 397 KEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG--LKYFKSMNDYNVNPNKEIYG 454
           +E+  LF +M  SG+RPD    + +LTACS+   +  G     +  +N Y VN +  I  
Sbjct: 391 EESFRLFHQMKSSGIRPDITTLLGILTACSNLAALGHGSSCHGYCVVNGYAVNTS--ICN 448

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
            ++D+  + G++  A  +  +M  K D   W  +L
Sbjct: 449 ALMDMYTKCGKLYVAKRVFDTM-HKRDIVSWNTML 482



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 107/421 (25%), Positives = 196/421 (46%), Gaps = 52/421 (12%)

Query: 118 VLKACKGMKSLSNAALVHGMAIKEGLE-GSIYVENSLMDVYATCCISMDNARLVFNDMKW 176
           +L++C   ++L    ++H   +K  L   S  V  +L  +YA+C   ++ AR VF+++  
Sbjct: 5   LLESCIRSRNLILGQIIHQHLLKRSLTLSSSTVLVNLTRLYASC-NEVELARHVFDEIPH 63

Query: 177 K--NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGK 234
              N ++W  +I  Y  +G     L ++ +ML  GV    +++   ++ACA    +  GK
Sbjct: 64  PRINPIAWDLMIRAYVSNGFAEKALDLYYKMLNSGVRPTKFTYPFVLKACAGLRAIEDGK 123

Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE-KS 293
           LIH+ V    F +++ V  +++D Y +   L  A + FDEM ++D++ WN +I+G+    
Sbjct: 124 LIHSHVKCSNFAADMYVCTALVDFYAKCGELDMAIKVFDEMPKRDIVAWNAMISGFSLHC 183

Query: 294 GSSECLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
             ++ + +F  M +S+  SPN  T   +  A     AL  G+ VH    R G   +L + 
Sbjct: 184 CLTDVIGLFLDMRRSDCLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVK 243

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM------ 406
             ++D+YAK   I  ++++F     ++ VTW++M+ GY  +   KEA E+F +M      
Sbjct: 244 TGILDVYAKSKCIIYARRVFDSDFKKNEVTWSAMIGGYVENEMIKEAGEVFLQMLVNADM 303

Query: 407 -------------------------------VKSGVRPDRIVFMAVLTACSHAGLVDEGL 435
                                          +K+G   D  V   V++  +  G + +  
Sbjct: 304 AMVTPVAIGLILMGCARFGDLSGGRCVHCYAIKAGFILDLTVGNTVISFYAKYGSLCDAF 363

Query: 436 KYFKSMNDYN-VNPNKEIYGCVVDLLGRAGRVKEAYEL---IKSMPFKPDESVWGPLLGA 491
           + F  +   + V+ N  I GCV +      R +E++ L   +KS   +PD +    +L A
Sbjct: 364 RQFTEIGLKDIVSYNSLISGCVENC-----RAEESFRLFHQMKSSGIRPDITTLLGILTA 418

Query: 492 C 492
           C
Sbjct: 419 C 419



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 137/282 (48%), Gaps = 6/282 (2%)

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFG-SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
           + +C  +  +  G++IH  ++K     S+  V+ ++  +Y   + +  A   FDE+    
Sbjct: 6   LESCIRSRNLILGQIIHQHLLKRSLTLSSSTVLVNLTRLYASCNEVELARHVFDEIPHPR 65

Query: 280 L--ITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQV 336
           +  I W+ +I  Y  +G +E  L+++ KM +    P  FT+  ++ ACA L A+  G+ +
Sbjct: 66  INPIAWDLMIRAYVSNGFAEKALDLYYKMLNSGVRPTKFTYPFVLKACAGLRAIEDGKLI 125

Query: 337 HAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHG 396
           H+ +       ++ +  AL+D YAKCG +  + K+F EM  RD+V W +M+ G+  H   
Sbjct: 126 HSHVKCSNFAADMYVCTALVDFYAKCGELDMAIKVFDEMPKRDIVAWNAMISGFSLHCCL 185

Query: 397 KEAIELFDEMVKSG-VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455
            + I LF +M +S  + P+    + +  A   AG + EG            + +  +   
Sbjct: 186 TDVIGLFLDMRRSDCLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVKTG 245

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
           ++D+  ++  +  A  +  S  FK +E  W  ++G   E+ +
Sbjct: 246 ILDVYAKSKCIIYARRVFDS-DFKKNEVTWSAMIGGYVENEM 286


>gi|296089060|emb|CBI38763.3| unnamed protein product [Vitis vinifera]
          Length = 719

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 194/607 (31%), Positives = 316/607 (52%), Gaps = 68/607 (11%)

Query: 40  LIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTV 99
           ++P         +I +Y + G + EAR LF E P R  ++W+ +I+GY  + C  +A  +
Sbjct: 66  VMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALEL 125

Query: 100 FVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
           F EM      PN FT  SVL+ C     L     +H  AIK   + + +V   L+D+YA 
Sbjct: 126 FWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAK 185

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
           C   ++   L       +N V WT ++TGY+ +G+G+  +  F++M  EG+E N ++F  
Sbjct: 186 CKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPS 245

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
            + AC S     FG  +H  +++ GFG+N+ V ++++DMY +   LS+A +  + M   D
Sbjct: 246 ILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDD 305

Query: 280 LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
            ++WN++I G  + G   E L++F  M       + FT+ S++                 
Sbjct: 306 PVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSLVN---------------- 349

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
                         NAL+DMYAK G    +  +F +M+D+D+++WTS++ G   +G  +E
Sbjct: 350 --------------NALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEE 395

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHA--------GLVDE----------------- 433
           A+ LF EM   G+ PD+IV  AVL+A  ++        G +++                 
Sbjct: 396 ALRLFCEMRIMGIHPDQIVIAAVLSALDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWT 455

Query: 434 -----------GLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481
                      G  YF+SM + Y + P  E Y C++DLLGR+G++ EA EL+  M  +PD
Sbjct: 456 ALIVGYAQNGRGRDYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPD 515

Query: 482 ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKI 541
            +VW  LL AC+ H    LG+ AA  + +L+P     Y++LSN+Y+A GKWEE AK R++
Sbjct: 516 ATVWKALLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRL 575

Query: 542 MRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCL 601
           M+  G  KE G SWIE+  KV  F++ D+    T  +Y  ++ ++  + E  Y PD++  
Sbjct: 576 MKLRGVSKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFA 635

Query: 602 IHDLEGE 608
           +HD++ E
Sbjct: 636 LHDMDEE 642



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 163/365 (44%), Gaps = 59/365 (16%)

Query: 265 LSDANQYFDEMTEKDLITWNTIIAGYEKSG------------------------------ 294
           + DA + FD M ++D  +WNT+I  Y  SG                              
Sbjct: 57  VDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRY 116

Query: 295 --SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
               E L +F +M+ E   PN FT+ S++  C+    L  G+Q+HA  ++   D N  + 
Sbjct: 117 GCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVV 176

Query: 353 NALIDMYAKCGNISDSQKIFSEMSD-RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411
             L+DMYAKC  I +++ +F    D R+ V WT+M+ GY  +G G +AIE F +M   G+
Sbjct: 177 TGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGI 236

Query: 412 RPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471
             ++  F ++LTAC        G +    +       N  +   +VD+  + G +  A  
Sbjct: 237 ECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARR 296

Query: 472 LIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLK---------PNMMGTYIIL 522
           ++++M    D   W  ++  C    L     L+  R++ L+         P+++   ++ 
Sbjct: 297 MLETMEVD-DPVSWNSMIVGCVRQGLGEEA-LSLFRIMHLRHMKIDEFTYPSLVNNALV- 353

Query: 523 SNIYAAEGKWE-EFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGV 581
            ++YA  G ++  F  F K+     + K+V +SW  +   V G + N   GS+ + +   
Sbjct: 354 -DMYAKRGYFDYAFDVFEKM-----TDKDV-ISWTSL---VTGCVHN---GSYEEALRLF 400

Query: 582 LEMLI 586
            EM I
Sbjct: 401 CEMRI 405



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 78/182 (42%), Gaps = 36/182 (19%)

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD------------------- 379
           G V    D N  L+N      +KCG + D++K+F  M DRD                   
Sbjct: 36  GTVHSSSDSNWVLSN-----LSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNE 90

Query: 380 ------------LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH 427
                        +TW+S++ GY  +G   EA+ELF EM   G RP++  + +VL  CS 
Sbjct: 91  ARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSM 150

Query: 428 AGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGP 487
             L+++G +          + N  +   +VD+  +   + EA  L +  P K +  +W  
Sbjct: 151 YVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTA 210

Query: 488 LL 489
           ++
Sbjct: 211 MV 212



 Score = 43.1 bits (100), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 30/56 (53%)

Query: 34  IQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTS 89
           I  D  +I    S L  +L+  Y   G IE+A  +FD M  +DV++WT +I GY  
Sbjct: 408 IHPDQIVIAAVLSALDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQ 463


>gi|357126882|ref|XP_003565116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Brachypodium distachyon]
          Length = 796

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 190/552 (34%), Positives = 311/552 (56%), Gaps = 16/552 (2%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            ++ +L+  Y   G + EAR +FD   ERD VSW  +++GY     H +   VF  M R 
Sbjct: 150 FVSNSLVSMYARCGDMGEARRVFDVTEERDDVSWNSLVSGYLRVGAHEEMLRVFALMRRC 209

Query: 107 EVNPNAFTLSSVLKACKG----MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
            +  N+F L SV+K C G    ++ ++ A  VHG  +K GL+  +++ ++++D+YA    
Sbjct: 210 AMGLNSFALGSVIKCCSGGDGSVRGIAEA--VHGCVVKAGLDTDLFLASAMVDMYAKRG- 266

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGY------AHSGNGYGGLGVFKEMLLEGVEMNPYS 216
           ++  A  +F  +   N V +  +I G        H       L ++ E+   G+E   ++
Sbjct: 267 ALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVHKEVVREALSLYSELQSRGMEPTEFT 326

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
           FS  +RAC   G + FGK IH  V+KH F  +  + ++++D+Y    C+ D  + F  + 
Sbjct: 327 FSSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDFIGSALIDLYFNSACMEDGFRCFRSVP 386

Query: 277 EKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ 335
           ++D++TW  +I+G  ++   E  L +F ++      P+ FT +S++ ACA+LA +  G+Q
Sbjct: 387 KQDVVTWTAMISGCVQNELFERALALFHELLGVGLKPDPFTISSVMNACASLAVVRTGEQ 446

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
           +     + G D   A+ N+ I MYA+ GN+  + + F EM   D+V+W++++  +  HG 
Sbjct: 447 MQCFATKSGFDRFTAMGNSCIHMYARSGNVEAAIQRFQEMESHDVVSWSAIISSHAQHGC 506

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYG 454
            ++A++ F+EMV + V P+ I F+ VLTACSH GLVDEGL+Y++ M  +Y + P  +   
Sbjct: 507 ARQALQFFNEMVGAKVVPNEITFLGVLTACSHGGLVDEGLRYYEIMKMEYGLCPTVKHCT 566

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514
           CVVDLLGRAGR+ +A   I+   F  +  VW  LLG+C+ HR    G+L A R+++L+P 
Sbjct: 567 CVVDLLGRAGRLADAEAFIRDSIFHDEPVVWQSLLGSCRIHRDMERGQLVADRIMELQPA 626

Query: 515 MMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSH 574
             G Y+ L N+Y   G+    +K R +M+  G KKE G+SWIE+R  +  F+A DK    
Sbjct: 627 SSGCYVNLYNMYLDAGELSLGSKIRDLMKERGVKKEPGLSWIELRSGIHSFVAGDKSHPE 686

Query: 575 TQYVYGVL-EML 585
              +Y  L EML
Sbjct: 687 CNAIYTKLAEML 698



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 129/464 (27%), Positives = 233/464 (50%), Gaps = 15/464 (3%)

Query: 45  PSILATN-LIKSY--FDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFV 101
           PS+   N L+ +Y     G   +AR L DEMP R+ VS+ ++I  Y+      ++   F+
Sbjct: 43  PSLFLRNTLLAAYCRLGAGDTHQARRLLDEMPRRNAVSFNLLIDAYSRAGQTEESLETFL 102

Query: 102 EMVRN-EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
              R  EV  + FT ++ L AC     L    +VH +A+ EGL   ++V NSL+ +YA C
Sbjct: 103 HAHRAAEVKADRFTYAAALAACSRAGRLKEGKVVHALAVLEGLAEGVFVSNSLVSMYARC 162

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
              M  AR VF+  + ++DVSW +L++GY   G     L VF  M    + +N ++    
Sbjct: 163 G-DMGEARRVFDVTEERDDVSWNSLVSGYLRVGAHEEMLRVFALMRRCAMGLNSFALGSV 221

Query: 221 VRACA-STGWV-SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK 278
           ++ C+   G V    + +H  V+K G  ++L + ++++DMY +   LS+A   F  + + 
Sbjct: 222 IKCCSGGDGSVRGIAEAVHGCVVKAGLDTDLFLASAMVDMYAKRGALSEAVALFKSVLDP 281

Query: 279 DLITWNTIIAGY-------EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALS 331
           +++ +N +IAG         K    E L+++S+++S    P  FTF+S+I AC     + 
Sbjct: 282 NVVVFNAMIAGLCRDEAAVHKEVVREALSLYSELQSRGMEPTEFTFSSVIRACNLAGDIE 341

Query: 332 CGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG 391
            G+Q+H  +++    G+  + +ALID+Y     + D  + F  +  +D+VTWT+M+ G  
Sbjct: 342 FGKQIHGQVLKHCFQGDDFIGSALIDLYFNSACMEDGFRCFRSVPKQDVVTWTAMISGCV 401

Query: 392 AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE 451
            +   + A+ LF E++  G++PD     +V+ AC+   +V  G +          +    
Sbjct: 402 QNELFERALALFHELLGVGLKPDPFTISSVMNACASLAVVRTGEQMQCFATKSGFDRFTA 461

Query: 452 IYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           +    + +  R+G V+ A +  + M    D   W  ++ +  +H
Sbjct: 462 MGNSCIHMYARSGNVEAAIQRFQEME-SHDVVSWSAIISSHAQH 504



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/417 (27%), Positives = 210/417 (50%), Gaps = 18/417 (4%)

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI-SMDNARL 169
           +AF L   L++C    SL  AA VHG   +     S+++ N+L+  Y          AR 
Sbjct: 13  DAFYLHH-LRSCA---SLPQAAAVHGHIARAHPSPSLFLRNTLLAAYCRLGAGDTHQARR 68

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG-VEMNPYSFSIAVRACASTG 228
           + ++M  +N VS+  LI  Y+ +G     L  F        V+ + ++++ A+ AC+  G
Sbjct: 69  LLDEMPRRNAVSFNLLIDAYSRAGQTEESLETFLHAHRAAEVKADRFTYAAALAACSRAG 128

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            +  GK++HA  +  G    + V NS++ MY R   + +A + FD   E+D ++WN++++
Sbjct: 129 RLKEGKVVHALAVLEGLAEGVFVSNSLVSMYARCGDMGEARRVFDVTEERDDVSWNSLVS 188

Query: 289 GYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACA--TLAALSCGQQVHAGIVRRGL 345
           GY + G+  E L +F+ M+      N F   S+I  C+    +     + VH  +V+ GL
Sbjct: 189 GYLRVGAHEEMLRVFALMRRCAMGLNSFALGSVIKCCSGGDGSVRGIAEAVHGCVVKAGL 248

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY---GAHGHG---KEA 399
           D +L LA+A++DMYAK G +S++  +F  + D ++V + +M+ G     A  H    +EA
Sbjct: 249 DTDLFLASAMVDMYAKRGALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVHKEVVREA 308

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL 459
           + L+ E+   G+ P    F +V+ AC+ AG ++ G +    +  +    +  I   ++DL
Sbjct: 309 LSLYSELQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDFIGSALIDL 368

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL--PNLGKLAALRVLDLKPN 514
              +  +++ +   +S+P K D   W  ++  C ++ L    L     L  + LKP+
Sbjct: 369 YFNSACMEDGFRCFRSVP-KQDVVTWTAMISGCVQNELFERALALFHELLGVGLKPD 424



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 119/247 (48%), Gaps = 3/247 (1%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           +G   + + LI  YF+   +E+    F  +P++DVV+WT MI+G        +A  +F E
Sbjct: 356 QGDDFIGSALIDLYFNSACMEDGFRCFRSVPKQDVVTWTAMISGCVQNELFERALALFHE 415

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           ++   + P+ FT+SSV+ AC  +  +     +   A K G +    + NS + +YA    
Sbjct: 416 LLGVGLKPDPFTISSVMNACASLAVVRTGEQMQCFATKSGFDRFTAMGNSCIHMYARSG- 474

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
           +++ A   F +M+  + VSW+ +I+ +A  G     L  F EM+   V  N  +F   + 
Sbjct: 475 NVEAAIQRFQEMESHDVVSWSAIISSHAQHGCARQALQFFNEMVGAKVVPNEITFLGVLT 534

Query: 223 ACASTGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYF-DEMTEKDL 280
           AC+  G V  G +      +++G    +     ++D+  R   L+DA  +  D +   + 
Sbjct: 535 ACSHGGLVDEGLRYYEIMKMEYGLCPTVKHCTCVVDLLGRAGRLADAEAFIRDSIFHDEP 594

Query: 281 ITWNTII 287
           + W +++
Sbjct: 595 VVWQSLL 601


>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
           1
 gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 684

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 193/575 (33%), Positives = 304/575 (52%), Gaps = 10/575 (1%)

Query: 38  PPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAW 97
           PP     P  LA  LI  Y      E AR +    P R+VVSWT +I+G       + A 
Sbjct: 39  PP-----PPFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTAL 93

Query: 98  TVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVY 157
             F EM R  V PN FT     KA   ++       +H +A+K G    ++V  S  D+Y
Sbjct: 94  VEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMY 153

Query: 158 ATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSF 217
               +  D+AR +F+++  +N  +W   I+     G     +  F E        N  +F
Sbjct: 154 CKTRLR-DDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITF 212

Query: 218 SIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE 277
              + AC+    ++ G  +H  V++ GF +++ V N ++D Y +   +  +   F EM  
Sbjct: 213 CAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGT 272

Query: 278 KDLITWNTIIAGYEKSGSSECLN-MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQV 336
           K+ ++W +++A Y ++   E  + ++ + + +    + F  +S+++ACA +A L  G+ +
Sbjct: 273 KNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSI 332

Query: 337 HAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHG 396
           HA  V+  ++  + + +AL+DMY KCG I DS++ F EM +++LVT  S++ GY   G  
Sbjct: 333 HAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQV 392

Query: 397 KEAIELFDEMVKSGV--RPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIY 453
             A+ LF+EM   G    P+ + F+++L+ACS AG V+ G+K F SM   Y + P  E Y
Sbjct: 393 DMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHY 452

Query: 454 GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513
            C+VD+LGRAG V+ AYE IK MP +P  SVWG L  AC+ H  P LG LAA  +  L P
Sbjct: 453 SCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDP 512

Query: 514 NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGS 573
              G +++LSN +AA G+W E    R+ ++G+G KK  G SWI V+++V  F A D+   
Sbjct: 513 KDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHI 572

Query: 574 HTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
             + +   L  L   M    Y+PD+   ++DLE E
Sbjct: 573 LNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEE 607


>gi|242088929|ref|XP_002440297.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
 gi|241945582|gb|EES18727.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
          Length = 869

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 202/547 (36%), Positives = 311/547 (56%), Gaps = 4/547 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+  Y   G +  AR +FD M   D +SW  MIAG+      N    +F+ M+++EV PN
Sbjct: 236 LMTMYAKCGDVVAARKVFDSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQDEVQPN 295

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
             T++SV  A   +  ++ A  +HG+A+K G    +   NSL+ +YA+  + M  AR VF
Sbjct: 296 LMTITSVTVASGLLSDITFAKEMHGLAVKRGFATDVAFCNSLIQMYASLGM-MGQARTVF 354

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           + M  ++ +SWT +I+GY  +G     L V+  M +  V  +  + + A+ ACA  G + 
Sbjct: 355 SRMDTRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLD 414

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY- 290
            G  +H      GF S + V N++L+MY +   +  A + F  M EKD+++W+++IAG+ 
Sbjct: 415 VGVKLHELAESKGFMSYVVVTNALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIAGFC 474

Query: 291 EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
               + E L  F  M ++   PN  TF + +AACA   AL  G+++HA ++R G+     
Sbjct: 475 FNHRNFEALYYFRHMLAD-VKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIAYEGY 533

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           L NALID+Y KCG    +   F     +D+V+W  M+ G+ AHG+G+ A+  F++MVK G
Sbjct: 534 LPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAGFVAHGNGETALSFFNQMVKIG 593

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEA 469
             PD + F+A+L ACS  G+V EG + F SM D Y++ PN + Y C+VDLL R G++ EA
Sbjct: 594 ECPDEVTFVALLCACSRGGMVSEGWELFHSMTDKYSIVPNLKHYACMVDLLSRVGQLTEA 653

Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529
           Y  I  MP  PD +VWG LL  C+ HR   LG+LAA  VL+L+PN  G +++L ++YA  
Sbjct: 654 YNFINEMPITPDAAVWGALLNGCRIHRHVELGELAAKYVLELEPNDAGYHVLLCDLYADA 713

Query: 530 GKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHM 589
           G W++ A+ RK MR  G   + G SW+EV+  V  F+ +D+     + +  VLE +   M
Sbjct: 714 GIWDKLARVRKTMREKGLDHDSGCSWVEVKGVVHAFLTDDESHPQIREINTVLEGIYERM 773

Query: 590 NETAYEP 596
             +   P
Sbjct: 774 KASGCAP 780



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 110/357 (30%), Positives = 188/357 (52%), Gaps = 3/357 (0%)

Query: 64  EARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACK 123
            A  +F +MPERDV SW VM+ GY       +A  ++  M+   V P+ +T   VL++C 
Sbjct: 147 HAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAGVRPDVYTFPCVLRSCG 206

Query: 124 GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWT 183
           G+        VH   ++ G    + V N+LM +YA C   +  AR VF+ M   + +SW 
Sbjct: 207 GVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCG-DVVAARKVFDSMAVMDCISWN 265

Query: 184 TLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH 243
            +I G+  +G    GL +F  ML + V+ N  + +    A      ++F K +H   +K 
Sbjct: 266 AMIAGHFENGECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLSDITFAKEMHGLAVKR 325

Query: 244 GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMF 302
           GF +++   NS++ MY     +  A   F  M  +D ++W  +I+GYEK+G   + L ++
Sbjct: 326 GFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMISGYEKNGFPDKALEVY 385

Query: 303 SKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362
           + M+    SP+  T  S +AACA L +L  G ++H     +G    + + NAL++MYAK 
Sbjct: 386 ALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFMSYVVVTNALLEMYAKS 445

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFM 419
             I  + ++F  M ++D+V+W+SM+ G+  +    EA+  F  M+ + V+P+ + F+
Sbjct: 446 KRIDKAIEVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYYFRHML-ADVKPNSVTFI 501



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 108/355 (30%), Positives = 184/355 (51%), Gaps = 11/355 (3%)

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +A  VF  M  ++  SW  ++ GY  +G     L ++  M+  GV  + Y+F   +R+C 
Sbjct: 147 HAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAGVRPDVYTFPCVLRSCG 206

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
                  G+ +HA V++ GF   + V+N+++ MY +   +  A + FD M   D I+WN 
Sbjct: 207 GVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARKVFDSMAVMDCISWNA 266

Query: 286 IIAGYEKSGSSEC---LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           +IAG+ ++G  EC   L +F  M  +   PN  T TS+  A   L+ ++  +++H   V+
Sbjct: 267 MIAGHFENG--ECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLSDITFAKEMHGLAVK 324

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
           RG   ++A  N+LI MYA  G +  ++ +FS M  RD ++WT+M+ GY  +G   +A+E+
Sbjct: 325 RGFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMISGYEKNGFPDKALEV 384

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           +  M  + V PD I   + L AC+  G +D G+K  +            +   ++++  +
Sbjct: 385 YALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFMSYVVVTNALLEMYAK 444

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLL-GACKEHRLPNLGKLAALR--VLDLKPN 514
           + R+ +A E+ K MP K D   W  ++ G C  HR  N   L   R  + D+KPN
Sbjct: 445 SKRIDKAIEVFKCMPEK-DVVSWSSMIAGFCFNHR--NFEALYYFRHMLADVKPN 496



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 106/348 (30%), Positives = 186/348 (53%), Gaps = 5/348 (1%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
           +LI+ Y   G++ +ART+F  M  RD +SWT MI+GY      ++A  V+  M  N V+P
Sbjct: 336 SLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSP 395

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           +  T++S L AC  + SL     +H +A  +G    + V N+L+++YA     +D A  V
Sbjct: 396 DDITIASALAACACLGSLDVGVKLHELAESKGFMSYVVVTNALLEMYAK-SKRIDKAIEV 454

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F  M  K+ VSW+++I G+  +   +  L  F+ ML + V+ N  +F  A+ ACA+TG +
Sbjct: 455 FKCMPEKDVVSWSSMIAGFCFNHRNFEALYYFRHMLAD-VKPNSVTFIAALAACAATGAL 513

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
             GK IHA V++ G      + N+++D+Y +      A   F     KD+++WN +IAG+
Sbjct: 514 RSGKEIHAHVLRCGIAYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAGF 573

Query: 291 EKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQV-HAGIVRRGLDGN 348
              G+ E  L+ F++M      P+  TF +++ AC+    +S G ++ H+   +  +  N
Sbjct: 574 VAHGNGETALSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTDKYSIVPN 633

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGH 395
           L     ++D+ ++ G ++++    +EM    D   W +++ G   H H
Sbjct: 634 LKHYACMVDLLSRVGQLTEAYNFINEMPITPDAAVWGALLNGCRIHRH 681



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 143/273 (52%), Gaps = 12/273 (4%)

Query: 249 LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKS 307
           L + N++L M  RF     A + F +M E+D+ +WN ++ GY K+G   E L+++ +M  
Sbjct: 129 LRLGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMW 188

Query: 308 ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISD 367
               P+ +TF  ++ +C  +     G++VHA ++R G    + + NAL+ MYAKCG++  
Sbjct: 189 AGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVA 248

Query: 368 SQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH 427
           ++K+F  M+  D ++W +M+ G+  +G     +ELF  M++  V+P+ +   +V  A   
Sbjct: 249 ARKVFDSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQDEVQPNLMTITSVTVA--- 305

Query: 428 AGLVDEGLKYFKSMNDYNVNPN--KEIYGC--VVDLLGRAGRVKEAYELIKSMPFKPDES 483
           +GL+ + + + K M+   V      ++  C  ++ +    G + +A  +   M  + D  
Sbjct: 306 SGLLSD-ITFAKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTR-DAM 363

Query: 484 VWGPLLGACKEHRLPN--LGKLAALRVLDLKPN 514
            W  ++   +++  P+  L   A + V ++ P+
Sbjct: 364 SWTAMISGYEKNGFPDKALEVYALMEVNNVSPD 396



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 120/246 (48%), Gaps = 5/246 (2%)

Query: 47  ILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           ++ TN L++ Y     I++A  +F  MPE+DVVSW+ MIAG+  FN  N     +   + 
Sbjct: 432 VVVTNALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIAGFC-FNHRNFEALYYFRHML 490

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
            +V PN+ T  + L AC    +L +   +H   ++ G+    Y+ N+L+D+Y  C     
Sbjct: 491 ADVKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIAYEGYLPNALIDLYVKCG-QTG 549

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A   F     K+ VSW  +I G+   GNG   L  F +M+  G   +  +F   + AC+
Sbjct: 550 YAWAQFCAHGAKDVVSWNIMIAGFVAHGNGETALSFFNQMVKIGECPDEVTFVALLCACS 609

Query: 226 STGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLITW 283
             G VS G +L H+   K+    NL     ++D+  R   L++A  + +EM    D   W
Sbjct: 610 RGGMVSEGWELFHSMTDKYSIVPNLKHYACMVDLLSRVGQLTEAYNFINEMPITPDAAVW 669

Query: 284 NTIIAG 289
             ++ G
Sbjct: 670 GALLNG 675



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 112/247 (45%), Gaps = 8/247 (3%)

Query: 305 MKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGN 364
           ++S    P+   + ++   C    A+  G +  A    R     L L NA++ M  + G 
Sbjct: 85  LESSAEPPDEDAYVALFRLCEWRRAVEPGLRACAHADDRHAWFGLRLGNAMLSMLVRFGE 144

Query: 365 ISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTA 424
              + ++F++M +RD+ +W  M+ GYG  G  +EA++L+  M+ +GVRPD   F  VL +
Sbjct: 145 TWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAGVRPDVYTFPCVLRS 204

Query: 425 CSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESV 484
           C        G +    +  +      ++   ++ +  + G V  A ++  SM    D   
Sbjct: 205 CGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARKVFDSMAVM-DCIS 263

Query: 485 WGPLLGACKEHRLPNLGKLAALRVL--DLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIM 542
           W  ++    E+   N G    L +L  +++PN+M     ++++  A G   +   F K M
Sbjct: 264 WNAMIAGHFENGECNAGLELFLTMLQDEVQPNLM----TITSVTVASGLLSDIT-FAKEM 318

Query: 543 RGMGSKK 549
            G+  K+
Sbjct: 319 HGLAVKR 325


>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
          Length = 644

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 181/559 (32%), Positives = 315/559 (56%), Gaps = 37/559 (6%)

Query: 40  LIPKGPSILATNLIKSYFD---EGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQA 96
           L+  G   + + ++ SY      G +  AR LFD +P+ D   +  +I  Y + +C  +A
Sbjct: 35  LVVHGVDDVTSQILASYCALPAGGGVWYARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEA 94

Query: 97  WTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDV 156
             +   M+R  + PN FTL  +LKAC  +++  +  + HG+ +K G  G ++V N+L+  
Sbjct: 95  LPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHS 154

Query: 157 YATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYS 216
           YA+   S+ ++R  F++M  +N VSW ++I GYA +GN      +F+ M  +G+  + ++
Sbjct: 155 YASAG-SLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFT 213

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR----------FD--- 263
               + AC++ G + FGKL+H+ ++  G   +L + N+++DMY +          FD   
Sbjct: 214 LVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMP 273

Query: 264 ------------------CLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSK 304
                              +  A  +F+++ EK +I+WN +I+ Y + G   E L+++++
Sbjct: 274 FKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNR 333

Query: 305 MKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGN 364
           MK    +P+ FT  ++++AC  L  L+ G+ +H  I     +  +AL N+L+DMYA+CG 
Sbjct: 334 MKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQ 393

Query: 365 ISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTA 424
           +  +  +FSEM  +++++W +++     HG  ++A+  F  MV     PD I F+A+L+A
Sbjct: 394 VDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRSMVSDAFPPDEITFVALLSA 453

Query: 425 CSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDES 483
           C+H GL++ G  YF++M   YNV P  E Y C+VDLLGR G++ +A +LIK MP +PD  
Sbjct: 454 CNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPDVV 513

Query: 484 VWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMR 543
           VWG LLGAC+ H    +GK    ++L+L+    G ++++SN+     +WE+  + RK+MR
Sbjct: 514 VWGALLGACRIHGHIQIGKQVIKQLLELEGMSGGLFVLISNMLYETHQWEDMKRLRKLMR 573

Query: 544 GMGSKKEVGMSWIEVRDKV 562
             G KK +G+S IE    +
Sbjct: 574 EWGMKKNMGVSSIETNSNI 592


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 187/517 (36%), Positives = 293/517 (56%), Gaps = 24/517 (4%)

Query: 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNA----- 167
           +L + LK+C  +   +  A +H +AI+ G     +  N+L+++Y    C  +D+      
Sbjct: 52  SLPAALKSCAALGLSALGASLHALAIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIV 111

Query: 168 ------------RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPY 215
                       R VF++M  ++ VSW TL+ G A  G  +  LG  ++M  EG   + +
Sbjct: 112 DVPGSSTAFESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSF 171

Query: 216 SFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM 275
           + S  +   A    V  G  +H    ++GF S++ V +S++DMY        + + FD +
Sbjct: 172 TLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNL 231

Query: 276 TEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334
             +D I WN+++AG  ++GS  E L +F +M      P   TF+S+I  C  LA+L  G+
Sbjct: 232 PVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGK 291

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
           Q+HA ++  G + N+ ++++LIDMY KCG IS +  IF +MS  D+V+WT+M++GY  HG
Sbjct: 292 QLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHG 351

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIY 453
             +EA+ LF+ M     +P+ I F+AVLTACSHAGLVD+G KYFKSM N Y + P  E +
Sbjct: 352 PAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHF 411

Query: 454 GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513
             + D LGRAG + EAY  I  M  KP  SVW  LL AC+ H+   L +  A ++++L+P
Sbjct: 412 AALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEP 471

Query: 514 NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGS 573
             +G++++LSN+Y+A G+W E A  R+ MR  G KK+   SWIEV+ K+  F+A+D+  S
Sbjct: 472 RSIGSHVVLSNMYSASGRWNEAAHLRESMRKKGMKKDPACSWIEVKSKLHVFVAHDR--S 529

Query: 574 HTQY--VYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           H  Y  +   L      M    + P+ + +  D+E E
Sbjct: 530 HPWYDRIIDALNAFSEQMAREGHVPNTEDVFQDIEEE 566



 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 106/346 (30%), Positives = 179/346 (51%), Gaps = 26/346 (7%)

Query: 62  IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121
            E  R +FDEM ERDVVSW  ++ G      H++A     +M R    P++FTLS+VL  
Sbjct: 120 FESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPI 179

Query: 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS 181
                 +     VHG A + G +  ++V +SL+D+YA  C   D +  VF+++  ++ + 
Sbjct: 180 FAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYAN-CTRTDYSVKVFDNLPVRDHIL 238

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           W +L+ G A +G+    LG+F+ ML  GV   P +FS  +  C +   + FGK +HA VI
Sbjct: 239 WNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVI 298

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLN 300
             GF  N+ + +S++DMYC+   +S A+  FD+M+  D+++W  +I GY   G + E L 
Sbjct: 299 CGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALV 358

Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN------- 353
           +F +M+     PN  TF +++ AC+           HAG+V +G     +++N       
Sbjct: 359 LFERMELGNAKPNHITFLAVLTACS-----------HAGLVDKGWKYFKSMSNHYGIVPT 407

Query: 354 -----ALIDMYAKCGNISDSQKIFSEMSDRDLVT-WTSMMIGYGAH 393
                AL D   + G + ++    S+M  +   + W++++     H
Sbjct: 408 LEHFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVH 453



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 113/243 (46%), Gaps = 3/243 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + ++LI  Y +    + +  +FD +P RD + W  ++AG        +A  +F  M++ 
Sbjct: 206 FVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQA 265

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V P   T SS++  C  + SL     +H   I  G E ++++ +SL+D+Y  C   +  
Sbjct: 266 GVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCG-EISI 324

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  +F+ M   + VSWT +I GYA  G     L +F+ M L   + N  +F   + AC+ 
Sbjct: 325 AHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSH 384

Query: 227 TGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT-WN 284
            G V  G K   +    +G    L    ++ D   R   L +A  +  +M  K   + W+
Sbjct: 385 AGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEAYNFISKMQIKPTASVWS 444

Query: 285 TII 287
           T++
Sbjct: 445 TLL 447


>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 690

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 180/522 (34%), Positives = 302/522 (57%), Gaps = 5/522 (0%)

Query: 91  NCHNQAWTVF--VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIY 148
           N + +A  +F  +E+  +  +    T  +++ AC G++S+     V    +  G E  +Y
Sbjct: 94  NRYREAMELFEILELEHDGFDVGGSTYDALVSACVGLRSIRGVKRVFNYMVNSGFEPDLY 153

Query: 149 VENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE 208
           V N ++ V+  C + +D AR +F++M  K+  SW T+I G+  SGN     G+F  M  E
Sbjct: 154 VMNRVLFVHVKCGLMLD-ARKLFDEMPEKDMASWMTMIGGFVDSGNFSEAFGLFLCMWEE 212

Query: 209 GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDA 268
             +    +F+  +RA A  G V  G+ IH+  +K G G +  V  +++DMY +   + DA
Sbjct: 213 FNDGRSRTFTTMIRASAGLGLVQVGRQIHSCALKRGVGDDTFVSCALIDMYSKCGSIEDA 272

Query: 269 NQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATL 327
           +  FD+M EK  + WN+IIA Y   G S E L+ + +M+      + FT + +I  CA L
Sbjct: 273 HCVFDQMPEKTTVGWNSIIASYALHGYSEEALSFYYEMRDSGAKIDHFTISIVIRICARL 332

Query: 328 AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMM 387
           A+L   +Q HA +VRRG D ++    AL+D Y+K G + D+  +F+ M  +++++W +++
Sbjct: 333 ASLEYAKQAHAALVRRGYDTDIVANTALVDFYSKWGRMEDAWHVFNRMRRKNVISWNALI 392

Query: 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNV 446
            GYG HG G+EA+E+F++M++ G+ P+ + F+AVL+ACS++GL + G + F SM+ D+ V
Sbjct: 393 AGYGNHGQGEEAVEMFEQMLREGMIPNHVTFLAVLSACSYSGLSERGWEIFYSMSRDHKV 452

Query: 447 NPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAAL 506
            P    Y C+V+LLGR G + EAYELI+S PFKP  ++W  LL AC+ H    LGKLAA 
Sbjct: 453 KPRAMHYACMVELLGREGLLDEAYELIRSAPFKPTTNMWATLLTACRMHENLELGKLAAE 512

Query: 507 RVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFI 566
            +  ++P  +  YI+L N+Y + GK +E A   + ++  G +     +WIEV+ +   F+
Sbjct: 513 NLYGMEPEKLCNYIVLLNLYNSSGKLKEAAGVLQTLKRKGLRMLPACTWIEVKKQSYAFL 572

Query: 567 ANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
             DK  S T+ +Y  +  ++  ++   Y  +   L+ D++ E
Sbjct: 573 CGDKSHSQTKEIYEKVNNMMVEISRHGYVEENKALLPDVDEE 614



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 115/425 (27%), Positives = 210/425 (49%), Gaps = 44/425 (10%)

Query: 60  GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119
           GL+ +AR LFDEMPE+D+ SW  MI G+      ++A+ +F+ M     +  + T ++++
Sbjct: 166 GLMLDARKLFDEMPEKDMASWMTMIGGFVDSGNFSEAFGLFLCMWEEFNDGRSRTFTTMI 225

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179
           +A  G+  +     +H  A+K G+    +V  +L+D+Y+ C  S+++A  VF+ M  K  
Sbjct: 226 RASAGLGLVQVGRQIHSCALKRGVGDDTFVSCALIDMYSKCG-SIEDAHCVFDQMPEKTT 284

Query: 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAA 239
           V W ++I  YA  G     L  + EM   G +++ ++ SI +R CA    + + K  HAA
Sbjct: 285 VGWNSIIASYALHGYSEEALSFYYEMRDSGAKIDHFTISIVIRICARLASLEYAKQAHAA 344

Query: 240 VIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SEC 298
           +++ G+ +++    +++D Y ++  + DA   F+ M  K++I+WN +IAGY   G   E 
Sbjct: 345 LVRRGYDTDIVANTALVDFYSKWGRMEDAWHVFNRMRRKNVISWNALIAGYGNHGQGEEA 404

Query: 299 LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDM 358
           + MF +M  E   PN  TF ++++AC+           ++G+  RG +            
Sbjct: 405 VEMFEQMLREGMIPNHVTFLAVLSACS-----------YSGLSERGWE------------ 441

Query: 359 YAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI--ELFDEMVKSGVRPDRI 416
                       IF  MS    V   +M         G+E +  E ++ +  +  +P   
Sbjct: 442 ------------IFYSMSRDHKVKPRAMHYACMVELLGREGLLDEAYELIRSAPFKPTTN 489

Query: 417 VFMAVLTACS-HAGLVDEGLKYFKSMNDYNVNPNKEI-YGCVVDLLGRAGRVKEAYELIK 474
           ++  +LTAC  H  L    L    + N Y + P K   Y  +++L   +G++KEA  +++
Sbjct: 490 MWATLLTACRMHENL---ELGKLAAENLYGMEPEKLCNYIVLLNLYNSSGKLKEAAGVLQ 546

Query: 475 SMPFK 479
           ++  K
Sbjct: 547 TLKRK 551



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 97/183 (53%), Gaps = 1/183 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + ++  LI  Y   G IE+A  +FD+MPE+  V W  +IA Y       +A + + EM  
Sbjct: 253 TFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEEALSFYYEMRD 312

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           +    + FT+S V++ C  + SL  A   H   ++ G +  I    +L+D Y+     M+
Sbjct: 313 SGAKIDHFTISIVIRICARLASLEYAKQAHAALVRRGYDTDIVANTALVDFYSKWG-RME 371

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +A  VFN M+ KN +SW  LI GY + G G   + +F++ML EG+  N  +F   + AC+
Sbjct: 372 DAWHVFNRMRRKNVISWNALIAGYGNHGQGEEAVEMFEQMLREGMIPNHVTFLAVLSACS 431

Query: 226 STG 228
            +G
Sbjct: 432 YSG 434


>gi|255558188|ref|XP_002520121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540613|gb|EEF42176.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 589

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 207/593 (34%), Positives = 327/593 (55%), Gaps = 21/593 (3%)

Query: 14  HCHKIPPIIKQ-SLQSVK-KSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDE 71
           HC KI   +   SL +   K+ + SD         I++ ++I  Y   G +  AR +FDE
Sbjct: 12  HCAKIKAFLHGLSLHAAALKTGMLSDI--------IVSNHVINLYSKCGNVIFARRMFDE 63

Query: 72  MPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNA 131
           M +R++VSW+ +I+GY        A  +F +M    + PN +  +SV+ AC  + +LS  
Sbjct: 64  MSDRNLVSWSAIISGYDQTGQPLLALNLFSQM---RIVPNEYVFASVISACASLTALSQG 120

Query: 132 ALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAH 191
             VH  ++K G     +V N+L+ +Y  C +  D A LV N M   N VS+  LI G+  
Sbjct: 121 LQVHAQSLKLGCVSVSFVSNALISMYMKCGLCTD-ALLVHNVMSEPNAVSYNALIAGFVE 179

Query: 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251
           +     G+  FK M  +G   + ++FS  +  C S      G  +H  +IK     +  +
Sbjct: 180 NQQPEKGIEAFKVMRQKGFAPDRFTFSGLLGICTSYDDFWRGMQLHCQMIKLNLEDSAFI 239

Query: 252 MNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERF 310
            N I+ MY +F+ + +A + F  + EKDLI+WNT++         E  L +F  M    F
Sbjct: 240 GNVIITMYSKFNLIEEAEKVFGLIKEKDLISWNTLVTACCFCKDHERALRVFRDMLDVCF 299

Query: 311 -SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
             P+ FTF  ++AACA LA++  G+Q+H  ++R     ++ ++NAL++MYAKCG+I +S 
Sbjct: 300 VKPDDFTFAGVLAACAGLASIRHGKQIHGHLIRTRQYQDVGVSNALVNMYAKCGSIKNSY 359

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
            +F   SDR+LV+W +++  +G HG G  A+E F++M   G+ PD + F+ +LTAC+HAG
Sbjct: 360 DVFRRTSDRNLVSWNTIIAAFGNHGLGARALEHFEKMKTVGIHPDSVTFVGLLTACNHAG 419

Query: 430 LVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPL 488
           LV+EG  YF SM + Y + PN E + C++DLLGRAGR++EA E ++ +PF  D  + G L
Sbjct: 420 LVEEGQVYFNSMEEAYGIFPNIEHFSCLIDLLGRAGRLQEAEEYMEKLPFGHDPIILGSL 479

Query: 489 LGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSK 548
           L AC+ H    +G+  A ++L L+P     Y++LSN+YA++  W   A+  K+++  G K
Sbjct: 480 LSACRLHGDMVIGEHLATQLLKLQPVTTSPYVLLSNLYASDEMWGGVAEAWKMLKYSGLK 539

Query: 549 KEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCL 601
           KE G S I+V      F   D   S  + +   ++ML    N T  E  I+ L
Sbjct: 540 KEPGHSLIDVMGMFEKFTMGDLSHSRIEEIKDTIKML----NWTVSEVSINHL 588



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/289 (30%), Positives = 156/289 (53%), Gaps = 8/289 (2%)

Query: 212 MNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQY 271
           M P +    +  CA       G  +HAA +K G  S++ V N ++++Y +   +  A + 
Sbjct: 1   MIPEAIGSLLHHCAKIKAFLHGLSLHAAALKTGMLSDIIVSNHVINLYSKCGNVIFARRM 60

Query: 272 FDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAAL 330
           FDEM++++L++W+ II+GY+++G     LN+FS+M   R  PN + F S+I+ACA+L AL
Sbjct: 61  FDEMSDRNLVSWSAIISGYDQTGQPLLALNLFSQM---RIVPNEYVFASVISACASLTAL 117

Query: 331 SCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY 390
           S G QVHA  ++ G      ++NALI MY KCG  +D+  + + MS+ + V++ +++ G+
Sbjct: 118 SQGLQVHAQSLKLGCVSVSFVSNALISMYMKCGLCTDALLVHNVMSEPNAVSYNALIAGF 177

Query: 391 GAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK 450
             +   ++ IE F  M + G  PDR  F  +L  C+       G++    M   N+  + 
Sbjct: 178 VENQQPEKGIEAFKVMRQKGFAPDRFTFSGLLGICTSYDDFWRGMQLHCQMIKLNLEDSA 237

Query: 451 EIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA---CKEHR 496
            I   ++ +  +   ++EA E +  +  + D   W  L+ A   CK+H 
Sbjct: 238 FIGNVIITMYSKFNLIEEA-EKVFGLIKEKDLISWNTLVTACCFCKDHE 285



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 105/194 (54%), Gaps = 5/194 (2%)

Query: 319 SIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR 378
           S++  CA + A   G  +HA  ++ G+  ++ ++N +I++Y+KCGN+  ++++F EMSDR
Sbjct: 8   SLLHHCAKIKAFLHGLSLHAAALKTGMLSDIIVSNHVINLYSKCGNVIFARRMFDEMSDR 67

Query: 379 DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYF 438
           +LV+W++++ GY   G    A+ LF +M    + P+  VF +V++AC+    + +GL+  
Sbjct: 68  NLVSWSAIISGYDQTGQPLLALNLFSQM---RIVPNEYVFASVISACASLTALSQGLQVH 124

Query: 439 KSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLP 498
                        +   ++ +  + G   +A  L+ ++  +P+   +  L+    E++ P
Sbjct: 125 AQSLKLGCVSVSFVSNALISMYMKCGLCTDAL-LVHNVMSEPNAVSYNALIAGFVENQQP 183

Query: 499 NLGKLAALRVLDLK 512
             G + A +V+  K
Sbjct: 184 EKG-IEAFKVMRQK 196


>gi|125542314|gb|EAY88453.1| hypothetical protein OsI_09918 [Oryza sativa Indica Group]
          Length = 781

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 183/545 (33%), Positives = 309/545 (56%), Gaps = 4/545 (0%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN-EVN 109
           +L+  Y   GL+E+A  +FD MP RD+V+W +M+ GY S    + A   F EM    EV 
Sbjct: 147 SLVAFYAKLGLVEDAERVFDGMPVRDIVTWNIMVDGYVSNGLGSLALACFQEMHDALEVQ 206

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
            ++  + + L AC    S      +HG  I+ GLE  I V  SL+D+Y  C   +  AR 
Sbjct: 207 HDSVGIIAALAACCLEFSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCG-EVAYARS 265

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           VF  M  +  V+W  +I GYA +         F +M  EG+++   +    + ACA T  
Sbjct: 266 VFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTES 325

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
             +G+ +H  V++  F  ++ +  ++L+MY +   +  + + F ++  K L++WN +IA 
Sbjct: 326 SLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAA 385

Query: 290 Y-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           Y  K   +E + +F ++ ++   P+ FT ++++ A   L +L   +Q+H+ I+  G   N
Sbjct: 386 YMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAEN 445

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
             + NA++ MYA+ G++  S++IF +M  +D+++W +M++GY  HG GK A+E+FDEM  
Sbjct: 446 TLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKY 505

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVK 467
           +G++P+   F++VLTACS +GLVDEG  +F  M  +Y + P  E YGC+ DLLGR G ++
Sbjct: 506 NGLQPNESTFVSVLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLR 565

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527
           E  + I+SMP  P   VWG LL A +     ++ + AA R+  L+ +  G YI+LS++YA
Sbjct: 566 EVLQFIESMPIDPTSRVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCYIVLSSMYA 625

Query: 528 AEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIR 587
             G+WE+  + R +M+  G ++   +S +E+    C F   D   S ++ ++ V ++L R
Sbjct: 626 DAGRWEDVERVRLLMKEKGLRRTEPISLVELHSTACSFANGDMSHSQSRTIHEVSDILSR 685

Query: 588 HMNET 592
            + ET
Sbjct: 686 KIKET 690



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 140/472 (29%), Positives = 226/472 (47%), Gaps = 19/472 (4%)

Query: 27  QSVKKSSIQSDPPLIP--KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMI 84
           Q++  ++ +  PP +P  +G S    +L+ S   EG ++EA      +   D     VMI
Sbjct: 23  QNLIPATSKEPPPRLPPKRGSS---KSLVVSLAAEGRMDEAVEALAAVRGPDAFLHNVMI 79

Query: 85  AGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLE 144
            G+        A   +  M+ +   P+ FT   V+K C  +  L      HGM IK GLE
Sbjct: 80  RGFADAGLPAGALAAYRGMLEDGARPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLE 139

Query: 145 GSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKE 204
             +Y  NSL+  YA   +  D  R VF+ M  ++ V+W  ++ GY  +G G   L  F+E
Sbjct: 140 HDVYTCNSLVAFYAKLGLVEDAER-VFDGMPVRDIVTWNIMVDGYVSNGLGSLALACFQE 198

Query: 205 MLLEGVEMNPYSFSI--AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRF 262
           M  + +E+   S  I  A+ AC        GK IH  VI+HG   ++ V  S+LDMYC+ 
Sbjct: 199 M-HDALEVQHDSVGIIAALAACCLEFSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKC 257

Query: 263 DCLSDANQYFDEMTEKDLITWNTIIAGYE-KSGSSECLNMFSKMKSERFSPNCFTFTSII 321
             ++ A   F  M  + ++TWN +I GY       E  + F +M++E       T  +++
Sbjct: 258 GEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLL 317

Query: 322 AACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLV 381
           AACA   +   G+ VH  +VRR    ++ L  AL++MY K G +  S+KIF +++++ LV
Sbjct: 318 AACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLV 377

Query: 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441
           +W +M+  Y       EAI LF E++   + PD      V+ A    G     L++ + +
Sbjct: 378 SWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLG----SLRHCRQI 433

Query: 442 NDYNVN----PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           + Y +      N  I   V+ +  R+G V  + E+   M  K D   W  ++
Sbjct: 434 HSYIIGLGYAENTLIMNAVLHMYARSGDVVASREIFDKMVSK-DVISWNTMI 484



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 168/334 (50%), Gaps = 11/334 (3%)

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           MD A      ++  +      +I G+A +G   G L  ++ ML +G   + ++F + V+ 
Sbjct: 57  MDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYRGMLEDGARPDRFTFPVVVKC 116

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           CA  G +  G+  H  VIK G   ++   NS++  Y +   + DA + FD M  +D++TW
Sbjct: 117 CARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTW 176

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSE-RFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           N ++ GY  +G  S  L  F +M        +     + +AAC    +   G+++H  ++
Sbjct: 177 NIMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAALAACCLEFSSMQGKEIHGYVI 236

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           R GL+ ++ +  +L+DMY KCG ++ ++ +F+ M  R +VTW  M+ GY  +    EA +
Sbjct: 237 RHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFD 296

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN----PNKEIYGCVV 457
            F +M   G++ + +  + +L AC+      E   Y +S++ Y V     P+  +   ++
Sbjct: 297 CFMQMRAEGLQVEVVTAINLLAACAQT----ESSLYGRSVHGYVVRRQFLPHVVLETALL 352

Query: 458 DLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
           ++ G+ G+V+ + ++   +  K   S W  ++ A
Sbjct: 353 EMYGKVGKVESSEKIFGKIANKTLVS-WNNMIAA 385



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 163/343 (47%), Gaps = 4/343 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + T+L+  Y   G +  AR++F  MP R VV+W  MI GY      ++A+  F++M    
Sbjct: 246 VGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEG 305

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           +     T  ++L AC   +S      VHG  ++      + +E +L+++Y      ++++
Sbjct: 306 LQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVG-KVESS 364

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             +F  +  K  VSW  +I  Y +       + +F E+L + +  + ++ S  V A    
Sbjct: 365 EKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLL 424

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
           G +   + IH+ +I  G+  N  +MN++L MY R   +  + + FD+M  KD+I+WNT+I
Sbjct: 425 GSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMI 484

Query: 288 AGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG-QQVHAGIVRRGL 345
            GY   G  +  L MF +MK     PN  TF S++ AC+    +  G    +  +   G+
Sbjct: 485 MGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACSVSGLVDEGWMHFNLMLQEYGM 544

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMM 387
              +     + D+  + G++ +  +    M  D     W S++
Sbjct: 545 IPQIEHYGCMTDLLGREGDLREVLQFIESMPIDPTSRVWGSLL 587



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 118/234 (50%), Gaps = 10/234 (4%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +L T L++ Y   G +E +  +F ++  + +VSW  MIA Y     + +A T+F+E++  
Sbjct: 346 VLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQ 405

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + P+ FT+S+V+ A   + SL +   +H   I  G   +  + N+++ +YA     +  
Sbjct: 406 PLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSG-DVVA 464

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           +R +F+ M  K+ +SW T+I GYA  G G   L +F EM   G++ N  +F   + AC+ 
Sbjct: 465 SREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACSV 524

Query: 227 T-----GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM 275
           +     GW+ F  ++     ++G    +     + D+  R   L +  Q+ + M
Sbjct: 525 SGLVDEGWMHFNLMLQ----EYGMIPQIEHYGCMTDLLGREGDLREVLQFIESM 574



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 40/77 (51%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           +++   ++  Y   G +  +R +FD+M  +DV+SW  MI GY        A  +F EM  
Sbjct: 446 TLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKY 505

Query: 106 NEVNPNAFTLSSVLKAC 122
           N + PN  T  SVL AC
Sbjct: 506 NGLQPNESTFVSVLTAC 522


>gi|225438593|ref|XP_002276456.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial [Vitis vinifera]
 gi|296082485|emb|CBI21490.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 197/589 (33%), Positives = 309/589 (52%), Gaps = 25/589 (4%)

Query: 7   LSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEAR 66
           L Y+   H H            V KS  Q+D          + T+++  Y     +  A 
Sbjct: 70  LKYSQIVHTH------------VVKSRFQADL--------FVQTSVVDMYVKCSQLGFAY 109

Query: 67  TLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMK 126
            LF  MP+RDV SW  MI G+      ++  ++F EM    +  ++ T+  +  +   +K
Sbjct: 110 NLFSRMPKRDVASWNSMILGFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSALSLK 169

Query: 127 SLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFN--DMKWKNDVSWTT 184
            L     +H   IK G++  + V N+ +  YA C      A  VF+  D   K  VSW +
Sbjct: 170 DLKMLESIHSFGIKIGIDTDVSVSNTWIAAYAKCG-EFGLAETVFDGIDKGLKTGVSWNS 228

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG 244
           +I GYAH       +G FK+ML  G   +  +    + +C     +  GKLIHA  I+ G
Sbjct: 229 MIAGYAHFEQCSKAVGFFKKMLCGGFRADLSTILSLLSSCVQPEVLFHGKLIHAHGIQVG 288

Query: 245 FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFS 303
             S++ V+N+++ MY +   +  A   FD M  K  ++W  +IAGY EK    E + +FS
Sbjct: 289 CDSDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAGYAEKGDLDEAMTLFS 348

Query: 304 KMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG 363
            M++    P+  T  S+++ C    AL  G+ +       GL  NL + NALID+YAKCG
Sbjct: 349 AMEAVGEKPDLVTIISLMSGCGQTGALELGKWIDTYATANGLKDNLMVCNALIDVYAKCG 408

Query: 364 NISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLT 423
           ++ +++++F  M ++ LV+WT+++ G   +G  KEA+ LF +MV+ G++P+ I F+AVL 
Sbjct: 409 SMDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFFQMVELGLKPNHITFLAVLQ 468

Query: 424 ACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDE 482
           AC+HAG +++G + F  M   Y +NP  + Y C+ DLLGR GR+KEA+E I++MPFKPD 
Sbjct: 469 ACNHAGFLEKGWECFNLMTKVYKINPGLDHYSCMADLLGRKGRLKEAFEFIQNMPFKPDV 528

Query: 483 SVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIM 542
            +W  LL ACK H+   +G+  A  + +L+P     Y+ ++NIYA+ GKW+  A  R +M
Sbjct: 529 GIWSVLLSACKIHQNVVIGECVAYHLFELEPQTAVPYVQMANIYASAGKWDRVAAIRTMM 588

Query: 543 RGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNE 591
           +   + K  G S ++V  K   F   D+       +Y  LE L   M E
Sbjct: 589 KCNKAMKSPGKSLVQVNGKTHEFTVEDRCHPEGLLIYETLENLALQMKE 637



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 130/477 (27%), Positives = 229/477 (48%), Gaps = 14/477 (2%)

Query: 77  VVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHG 136
           V  W   I    +    ++A  +F +M +N + PN  T  SV KAC  + +L  + +VH 
Sbjct: 19  VAQWNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACSKLLNLKYSQIVHT 78

Query: 137 MAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGY 196
             +K   +  ++V+ S++D+Y  C   +  A  +F+ M  ++  SW ++I G+A  G   
Sbjct: 79  HVVKSRFQADLFVQTSVVDMYVKCS-QLGFAYNLFSRMPKRDVASWNSMILGFAQLGFVD 137

Query: 197 GGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSIL 256
             + +F EM +EG+  +  +      +  S   +   + IH+  IK G  +++ V N+ +
Sbjct: 138 RVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDTDVSVSNTWI 197

Query: 257 DMYCRFDCLSDANQYFDEMTE--KDLITWNTIIAGYEK-SGSSECLNMFSKMKSERFSPN 313
             Y +      A   FD + +  K  ++WN++IAGY      S+ +  F KM    F  +
Sbjct: 198 AAYAKCGEFGLAETVFDGIDKGLKTGVSWNSMIAGYAHFEQCSKAVGFFKKMLCGGFRAD 257

Query: 314 CFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFS 373
             T  S++++C     L  G+ +HA  ++ G D ++ + N LI MY+KCG+I  ++ +F 
Sbjct: 258 LSTILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLFD 317

Query: 374 EMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDE 433
            M  +  V+WT+M+ GY   G   EA+ LF  M   G +PD +  +++++ C   G ++ 
Sbjct: 318 NMLGKTRVSWTAMIAGYAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALEL 377

Query: 434 GLKYFKSMNDYN-VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGAC 492
           G K+  +    N +  N  +   ++D+  + G +  A EL  +MP K   S W  L+  C
Sbjct: 378 G-KWIDTYATANGLKDNLMVCNALIDVYAKCGSMDNARELFYTMPEKSLVS-WTTLIAGC 435

Query: 493 K---EHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA---EGKWEEFAKFRKIMR 543
               E +   LG    +  L LKPN +    +L     A   E  WE F    K+ +
Sbjct: 436 ALNGEFK-EALGLFFQMVELGLKPNHITFLAVLQACNHAGFLEKGWECFNLMTKVYK 491


>gi|15229194|ref|NP_190540.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183401|sp|Q9M2Y7.1|PP274_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49710
 gi|6723416|emb|CAB66909.1| putative protein [Arabidopsis thaliana]
 gi|332645058|gb|AEE78579.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 721

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 185/561 (32%), Positives = 314/561 (55%), Gaps = 10/561 (1%)

Query: 45  PSILATNLI-KSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           P++ + N+I K+Y  +  I  AR LFDE+P+ D VS+  +I+GY        A  +F  M
Sbjct: 72  PNVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRM 131

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
            +     + FTLS ++ AC     L     +H  ++  G +    V N+ +  Y+   + 
Sbjct: 132 RKLGFEVDGFTLSGLIAACCDRVDLIKQ--LHCFSVSGGFDSYSSVNNAFVTYYSKGGLL 189

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
            +   + +   + +++VSW ++I  Y     G   L ++KEM+ +G +++ ++ +  + A
Sbjct: 190 REAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNA 249

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRF---DCLSDANQYFDEMTEKDL 280
             S   +  G+  H  +IK GF  N  V + ++D Y +    D + D+ + F E+   DL
Sbjct: 250 LTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDL 309

Query: 281 ITWNTIIAGYE--KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           + WNT+I+GY   +  S E +  F +M+     P+  +F  + +AC+ L++ S  +Q+H 
Sbjct: 310 VVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHG 369

Query: 339 GIVRRGLDGN-LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
             ++  +  N +++ NALI +Y K GN+ D++ +F  M + + V++  M+ GY  HGHG 
Sbjct: 370 LAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGT 429

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCV 456
           EA+ L+  M+ SG+ P++I F+AVL+AC+H G VDEG +YF +M + + + P  E Y C+
Sbjct: 430 EALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCM 489

Query: 457 VDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMM 516
           +DLLGRAG+++EA   I +MP+KP    W  LLGAC++H+   L + AA  ++ ++P   
Sbjct: 490 IDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAANELMVMQPLAA 549

Query: 517 GTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQ 576
             Y++L+N+YA   KWEE A  RK MRG   +K+ G SWIEV+ K   F+A D      +
Sbjct: 550 TPYVMLANMYADARKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIR 609

Query: 577 YVYGVLEMLIRHMNETAYEPD 597
            V   LE +++ M +  Y  D
Sbjct: 610 EVNEYLEEMMKKMKKVGYVMD 630



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 43/82 (52%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           IP     +   LI  Y+  G +++AR +FD MPE + VS+  MI GY       +A  ++
Sbjct: 376 IPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLY 435

Query: 101 VEMVRNEVNPNAFTLSSVLKAC 122
             M+ + + PN  T  +VL AC
Sbjct: 436 QRMLDSGIAPNKITFVAVLSAC 457



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/216 (20%), Positives = 86/216 (39%), Gaps = 41/216 (18%)

Query: 316 TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNIS--------- 366
           TF  ++        L  G+ +HA  V+  +  +  L+N  +++Y+KCG +S         
Sbjct: 10  TFRDLLLKSVAERDLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYST 69

Query: 367 -----------------DSQ-----KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
                            DS+     ++F E+   D V++ +++ GY        A+ LF 
Sbjct: 70  EEPNVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFK 129

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCV----VDLL 460
            M K G   D      ++ AC       + +   K ++ ++V+   + Y  V    V   
Sbjct: 130 RMRKLGFEVDGFTLSGLIAACC------DRVDLIKQLHCFSVSGGFDSYSSVNNAFVTYY 183

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR 496
            + G ++EA  +   M    DE  W  ++ A  +H+
Sbjct: 184 SKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQHK 219


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 194/601 (32%), Positives = 324/601 (53%), Gaps = 40/601 (6%)

Query: 45  PSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           P++   N L+ +     L+ +   LF  MP+RD VS+  +IAG++      +A   +  +
Sbjct: 74  PNLFTRNALLSALAHARLLPDMDRLFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRAL 133

Query: 104 VRNE-------VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDV 156
           +R E       V P+  T+S ++ A   +   +    VH   ++ G     +  + L+D+
Sbjct: 134 LREEAVVDGARVRPSRITMSGMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDM 193

Query: 157 YATC------------------------------CISMDNARLVFNDMKWKNDVSWTTLI 186
           YA                                C  ++ AR VF  M  ++ ++WTT++
Sbjct: 194 YAKMGLIGDAKRVFDEMVVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMV 253

Query: 187 TGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFG 246
           TG   +G     L VF+ M  EGV ++ Y+F   + AC +      GK IHA  I+  + 
Sbjct: 254 TGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYD 313

Query: 247 SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKM 305
            N+ V ++++DMY +   +  A   F  MT K++I+W  +I GY ++G   E + +FS+M
Sbjct: 314 GNIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEM 373

Query: 306 KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNI 365
           +++   PN FT  S+I++CA LA+L  G Q H   +  GL   + +++AL+ +Y KCG+I
Sbjct: 374 QTDGIKPNDFTLGSVISSCANLASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSI 433

Query: 366 SDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTAC 425
            D+ ++F EM   D V++T+++ GY   G  KE I+LF++M+  GV+P+ + F+ VL+AC
Sbjct: 434 EDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSAC 493

Query: 426 SHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESV 484
           S +GLV++G  YF SM  D+ +    + Y C++DL  R+GR+KEA E I+ MP  PD   
Sbjct: 494 SRSGLVEKGCSYFHSMQQDHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQMPRCPDAIG 553

Query: 485 WGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544
           W  LL AC+      +GK AA  +L   P    +Y++L +++A++G+W E A  R+ MR 
Sbjct: 554 WATLLSACRLRGDMEIGKWAAENLLKTDPQNPASYVLLCSMHASKGEWSEVALLRRGMRD 613

Query: 545 MGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHD 604
              KKE G SWI+ +++V  F A+D+    +  +Y  L+ L   M E  Y+PD+  ++HD
Sbjct: 614 RQVKKEPGCSWIKYKNRVHIFSADDQSHPFSGTIYEKLQWLNSKMAEEGYKPDVSSVLHD 673

Query: 605 L 605
           +
Sbjct: 674 V 674



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 154/306 (50%), Gaps = 12/306 (3%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   + + L+  Y     I  A  +F  M  ++++SWT MI GY    C  +A  VF EM
Sbjct: 314 GNIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEM 373

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
             + + PN FTL SV+ +C  + SL   A  H MA+  GL   I V ++L+ +Y  C  S
Sbjct: 374 QTDGIKPNDFTLGSVISSCANLASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCG-S 432

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +++A  +F++M + + VS+T L++GYA  G     + +F++MLL+GV+ N  +F   + A
Sbjct: 433 IEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSA 492

Query: 224 CASTGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE-KDLI 281
           C+ +G V  G    H+    HG          ++D+Y R   L +A ++  +M    D I
Sbjct: 493 CSRSGLVEKGCSYFHSMQQDHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQMPRCPDAI 552

Query: 282 TWNTIIAGYEKSGSSECLNMFSK--MKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
            W T+++     G  E     ++  +K++  +P      S +  C+  A  S G+     
Sbjct: 553 GWATLLSACRLRGDMEIGKWAAENLLKTDPQNP-----ASYVLLCSMHA--SKGEWSEVA 605

Query: 340 IVRRGL 345
           ++RRG+
Sbjct: 606 LLRRGM 611



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 97/417 (23%), Positives = 166/417 (39%), Gaps = 94/417 (22%)

Query: 251 VMNSILDMYCR----------FDCLSDANQY---------------------FDEMTEKD 279
           V+N +L  Y R          FD + D N +                     F  M ++D
Sbjct: 47  VLNHLLTAYARSGRLPLARRLFDAMPDPNLFTRNALLSALAHARLLPDMDRLFASMPQRD 106

Query: 280 LITWNTIIAGYE--------KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALS 331
            +++N +IAG+                L   + +   R  P+  T + ++ A + L   +
Sbjct: 107 AVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSRITMSGMVMAASALGDRA 166

Query: 332 CGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSE----------------- 374
            G+QVH  I+R G        + L+DMYAK G I D++++F E                 
Sbjct: 167 LGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVVKNVVMYNTMITGLL 226

Query: 375 --------------MSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420
                         M DRD +TWT+M+ G   +G   EA+++F  M   GV  D+  F +
Sbjct: 227 RCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGS 286

Query: 421 VLTACSHAGLVDEGLKYFKSMNDYNV----NPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
           +LTAC      +EG    K ++ Y +    + N  +   +VD+  +   ++ A  + + M
Sbjct: 287 ILTACGALAASEEG----KQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRM 342

Query: 477 PFKPDESVWGPLLG----ACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKW 532
             K   S    ++G     C E     +   + ++   +KPN      ++S+  A     
Sbjct: 343 TCKNIISWTAMIVGYGQNGCGEE---AVRVFSEMQTDGIKPNDFTLGSVISSC-ANLASL 398

Query: 533 EEFAKFR--KIMRGMGSKKEVGMSWIEVRDKVCGFIAN-----DKMGSHTQYVYGVL 582
           EE A+F    ++ G+     V  + + +  K CG I +     D+M  H Q  Y  L
Sbjct: 399 EEGAQFHCMALVSGLRPYITVSSALVTLYGK-CGSIEDAHRLFDEMPFHDQVSYTAL 454


>gi|326495056|dbj|BAJ85624.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 673

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 178/507 (35%), Positives = 296/507 (58%), Gaps = 3/507 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+  Y   G +E AR +FD +  R+VVSWT M++G        +   +F EM    V P+
Sbjct: 163 LVDMYAKAGDLENARKVFDRILGRNVVSWTSMLSGCLQNGFAEEGLALFNEMREERVLPS 222

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
            +T++SVL AC  + SL     VHG  IK G+  + ++  +++D+Y  C   +++AR +F
Sbjct: 223 EYTMASVLMACTMLGSLHQGRWVHGSVIKHGMVFNPFITAAVLDMYVKCG-EVEDARRLF 281

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           +++ + + V WTT+I GY  +G+    L +F +     +  N  + +  + A A    +S
Sbjct: 282 DELGFVDLVLWTTMIVGYTQNGSPLDALLLFSDKKFVHIVPNSVTIATVLSASAQLRNLS 341

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY- 290
            G+LIHA  +K     N  VMN+++DMY +   LS+AN  F  ++ KD++TWN++IAGY 
Sbjct: 342 LGRLIHAMSVKLLVIENDVVMNALVDMYAKCKALSEANGIFGRISNKDVVTWNSLIAGYV 401

Query: 291 EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           E    +E L +FS+M+ +  SP+  +  + ++AC  L  L  G+  H   V+R    N+ 
Sbjct: 402 ENDMGNEALMLFSQMRVQGSSPDAISIVNALSACVCLGDLLIGKCFHTYAVKRAFLSNVY 461

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           +  AL+++Y KC ++  +Q++FSEMS+R+ VTW +M+ GYG  G    +I+L ++M+K  
Sbjct: 462 VNTALLNLYNKCADLPSAQRVFSEMSERNSVTWGAMIGGYGMQGDSAGSIDLLNKMLKDN 521

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDY-NVNPNKEIYGCVVDLLGRAGRVKEA 469
           ++P+ +VF ++L+ CSH G+V  G   F SM  Y N+ P+ + Y C+VD+L RAG ++EA
Sbjct: 522 IQPNEVVFTSILSTCSHTGMVSVGKMCFDSMAQYFNITPSMKHYACMVDVLARAGNLEEA 581

Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529
            E I+ MP   D S+WG  L  CK H     G+ A  R++ L P+    Y+++SN+Y + 
Sbjct: 582 LEFIQKMPMPADISIWGAFLHGCKLHSRLEFGEEAINRMMVLHPDKPDFYVLMSNLYTSY 641

Query: 530 GKWEEFAKFRKIMRGMGSKKEVGMSWI 556
           G+W++    R++M+  G  K  G S +
Sbjct: 642 GRWDKSLAIRRLMQERGLVKLPGCSSV 668



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 122/245 (49%), Gaps = 3/245 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++   L+  Y     + EA  +F  +  +DVV+W  +IAGY   +  N+A  +F +M   
Sbjct: 360 VVMNALVDMYAKCKALSEANGIFGRISNKDVVTWNSLIAGYVENDMGNEALMLFSQMRVQ 419

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
             +P+A ++ + L AC  +  L      H  A+K     ++YV  +L+++Y  C   + +
Sbjct: 420 GSSPDAISIVNALSACVCLGDLLIGKCFHTYAVKRAFLSNVYVNTALLNLYNKCA-DLPS 478

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A+ VF++M  +N V+W  +I GY   G+  G + +  +ML + ++ N   F+  +  C+ 
Sbjct: 479 AQRVFSEMSERNSVTWGAMIGGYGMQGDSAGSIDLLNKMLKDNIQPNEVVFTSILSTCSH 538

Query: 227 TGWVSFGKLIHAAVIKH-GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLITWN 284
           TG VS GK+   ++ ++     ++     ++D+  R   L +A ++  +M    D+  W 
Sbjct: 539 TGMVSVGKMCFDSMAQYFNITPSMKHYACMVDVLARAGNLEEALEFIQKMPMPADISIWG 598

Query: 285 TIIAG 289
             + G
Sbjct: 599 AFLHG 603



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 134/286 (46%), Gaps = 11/286 (3%)

Query: 210 VEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDAN 269
           VE  P+  ++  R   +   +   + +HA ++ HG    L     +L  Y     L+ A 
Sbjct: 16  VEHLPHGGALLHRLLPACATLPSLRALHARLLAHGLLRALRARTKLLSCYAALGDLASAR 75

Query: 270 QYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSP----NCFTFTSIIAAC 324
           +  DE    D  T+   +  +  +G  ++ L +   M+  R  P    +    +  + A 
Sbjct: 76  RVLDETPRPDPYTYRVALGWHAAAGRHADALALHRGMR--RRCPEAHDDVVLLSLALKAS 133

Query: 325 ATLAALSCGQQVHAGIVRRG-LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTW 383
              A    G+++H   V+ G  DG   + N L+DMYAK G++ +++K+F  +  R++V+W
Sbjct: 134 VRSADFRYGRRLHCNAVKAGGADG--FVMNCLVDMYAKAGDLENARKVFDRILGRNVVSW 191

Query: 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND 443
           TSM+ G   +G  +E + LF+EM +  V P      +VL AC+  G + +G     S+  
Sbjct: 192 TSMLSGCLQNGFAEEGLALFNEMREERVLPSEYTMASVLMACTMLGSLHQGRWVHGSVIK 251

Query: 444 YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           + +  N  I   V+D+  + G V++A  L   + F  D  +W  ++
Sbjct: 252 HGMVFNPFITAAVLDMYVKCGEVEDARRLFDELGFV-DLVLWTTMI 296


>gi|15226150|ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101011|sp|P93005.1|PP181_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33680
 gi|1707007|gb|AAC69139.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253774|gb|AEC08868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 727

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 181/560 (32%), Positives = 314/560 (56%), Gaps = 5/560 (0%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   + T+L+  Y   GL+E+   +F  MPER+  +W+ M++GY +     +A  VF   
Sbjct: 151 GDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLF 210

Query: 104 VRN--EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
           +R   E + + +  ++VL +      +     +H + IK GL G + + N+L+ +Y+ C 
Sbjct: 211 LREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKC- 269

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
            S++ A  +F+    +N ++W+ ++TGY+ +G     + +F  M   G++ + Y+    +
Sbjct: 270 ESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVL 329

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
            AC+   ++  GK +H+ ++K GF  +L    +++DMY +  CL+DA + FD + E+D+ 
Sbjct: 330 NACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVA 389

Query: 282 TWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
            W ++I+GY + S + E L ++ +MK+    PN  T  S++ AC++LA L  G+QVH   
Sbjct: 390 LWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHT 449

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           ++ G    + + +AL  MY+KCG++ D   +F    ++D+V+W +M+ G   +G G EA+
Sbjct: 450 IKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEAL 509

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDY-NVNPNKEIYGCVVDL 459
           ELF+EM+  G+ PD + F+ +++ACSH G V+ G  YF  M+D   ++P  + Y C+VDL
Sbjct: 510 ELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDL 569

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
           L RAG++KEA E I+S        +W  LL ACK H    LG  A  +++ L      TY
Sbjct: 570 LSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMALGSRESSTY 629

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVY 579
           + LS IY A G+  +  +  K MR  G  KEVG SWIE++++   F+  D M    +   
Sbjct: 630 VQLSGIYTALGRMRDVERVWKHMRANGVSKEVGCSWIELKNQYHVFVVGDTMHPMIEETK 689

Query: 580 GVLEMLIRHMNETAYEPDID 599
            ++ ++ R M E  +   +D
Sbjct: 690 DLVCLVSRQMIEEGFVTVLD 709



 Score =  221 bits (564), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 142/484 (29%), Positives = 253/484 (52%), Gaps = 41/484 (8%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTV---FVEMVR 105
           A  L+  Y   G + +A ++F+ +  +DVVSW  +I GY+     + ++TV   F EM  
Sbjct: 52  ANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRA 111

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
            ++ PNA+TL+ + KA   ++S +     H + +K    G IYV+ SL+ +Y    +  D
Sbjct: 112 QDILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVED 171

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEM--NPYSFSIAVRA 223
             + VF  M  +N  +W+T+++GYA  G     + VF   L E  E   + Y F+  + +
Sbjct: 172 GLK-VFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSS 230

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
            A+T +V  G+ IH   IK+G    + + N+++ MY + + L++A + FD   +++ ITW
Sbjct: 231 LAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITW 290

Query: 284 NTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           + ++ GY ++G S E + +FS+M S    P+ +T   ++ AC+ +  L  G+Q+H+ +++
Sbjct: 291 SAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLK 350

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            G + +L    AL+DMYAK G ++D++K F  + +RD+  WTS++ GY  +   +EA+ L
Sbjct: 351 LGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALIL 410

Query: 403 FDEMVKSGVRPDRIVFMAVLTACS-----------HAGLVDEGLK------------YFK 439
           +  M  +G+ P+     +VL ACS           H   +  G              Y K
Sbjct: 411 YRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSK 470

Query: 440 --SMNDYNV----NPNKEI--YGCVVDLLGRAGRVKEAYELIKSM---PFKPDESVWGPL 488
             S+ D N+     PNK++  +  ++  L   G+  EA EL + M     +PD+  +  +
Sbjct: 471 CGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNI 530

Query: 489 LGAC 492
           + AC
Sbjct: 531 ISAC 534



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 115/392 (29%), Positives = 208/392 (53%), Gaps = 10/392 (2%)

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
           + E+NP+  TL   L      ++L     VHG  I+ G    I   N L++ YA C   +
Sbjct: 7   QTELNPHTSTLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCG-KL 65

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSG---NGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
             A  +FN +  K+ VSW +LITGY+ +G   + Y  + +F+EM  + +  N Y+ +   
Sbjct: 66  AKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIF 125

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
           +A +S    + G+  HA V+K     ++ V  S++ MYC+   + D  + F  M E++  
Sbjct: 126 KAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTY 185

Query: 282 TWNTIIAGYEKSGSSE----CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
           TW+T+++GY   G  E      N+F + K E  S + + FT+++++ A    +  G+Q+H
Sbjct: 186 TWSTMVSGYATRGRVEEAIKVFNLFLREKEEG-SDSDYVFTAVLSSLAATIYVGLGRQIH 244

Query: 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
              ++ GL G +AL+NAL+ MY+KC +++++ K+F    DR+ +TW++M+ GY  +G   
Sbjct: 245 CITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESL 304

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVV 457
           EA++LF  M  +G++P     + VL ACS    ++EG +    +       +      +V
Sbjct: 305 EAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALV 364

Query: 458 DLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           D+  +AG + +A +    +  + D ++W  L+
Sbjct: 365 DMYAKAGCLADARKGFDCLQ-ERDVALWTSLI 395


>gi|302804548|ref|XP_002984026.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
 gi|300148378|gb|EFJ15038.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
          Length = 745

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 190/563 (33%), Positives = 313/563 (55%), Gaps = 5/563 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPE-RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           ++AT+LI  +   G +EEA ++F  M   RD++S T MI  Y     ++ A   + +M  
Sbjct: 104 VVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRS 163

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             + P+AFT +++L AC     L +   +H   ++    G+I V N+L+ +YA C  S+ 
Sbjct: 164 QGLEPDAFTYAAILGACSSPDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCG-SLK 222

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +++ +F  M  K+ VSW  +I  Y   G+      +F  M   G   + Y+FS  + ACA
Sbjct: 223 DSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACA 282

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           S   +  G+++H  +   GF  +  + N+++ M+ R   L  A +YF  + +K+L  WNT
Sbjct: 283 SPKRLEDGRMLHVRITARGFDRDFAMQNNLISMFTRCGSLESARRYFYSIEKKELGAWNT 342

Query: 286 IIAGYEK-SGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           ++A Y +     + L ++  M  E F+P+ FTF+S++ +CA+L AL  G+ +H      G
Sbjct: 343 MLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIHECSTSCG 402

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
            + ++ L  AL++MYAKCG+++D++K F  +S++D+V+W++M+     HGH +EA+EL  
Sbjct: 403 FEKDVILGTALVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEALELSH 462

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRA 463
            M   G+  + +   +VL ACSH G + EG+ YF  ++ D+ +  ++E     +DLLGRA
Sbjct: 463 LMNLQGIAQNEVTASSVLHACSHGGRLYEGIDYFMGLSQDFGIERDEENTVGFIDLLGRA 522

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G +KEA  ++ +MPFK        LLG CK H     GK    R++ L+P   G+Y++L+
Sbjct: 523 GWLKEAEHVLHTMPFKVSFVALVTLLGGCKVHGDVRRGKALTKRIVALEPENPGSYVLLN 582

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           N+YAA G+W++ AK R+ MR  G K++ G S IE RDK+  F   D        +   LE
Sbjct: 583 NMYAAAGRWDDVAKLRRYMRKKGVKRQTGCSSIEYRDKIYEFSVGDTSNPRNLEIRAELE 642

Query: 584 MLIRHMN-ETAYEPDIDCLIHDL 605
            L   M  E  Y PD   + HD+
Sbjct: 643 RLYSRMKEEEGYVPDTRDVFHDV 665



 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 128/452 (28%), Positives = 235/452 (51%), Gaps = 4/452 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + LA  +I+ Y      E+AR +FD + +R+  SW++++  Y     + +A  V+ EMVR
Sbjct: 2   TFLANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVR 61

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
            E++ +A+TLSSVL AC  +  +    +V   A + G E  + V  SL+ ++A C   ++
Sbjct: 62  KEISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGC-LE 120

Query: 166 NARLVFNDMKWKND-VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
            A  VF  M    D +S T +I  Y   G     L  + +M  +G+E + ++++  + AC
Sbjct: 121 EAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGAC 180

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           +S  ++  GK IH  +++     N+ V N+++ MY +   L D+   F  M  KD+++WN
Sbjct: 181 SSPDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVSWN 240

Query: 285 TIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +IA Y   G   +  ++F +M +   +P+ +TF+SI+ ACA+   L  G+ +H  I  R
Sbjct: 241 AMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVRITAR 300

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G D + A+ N LI M+ +CG++  +++ F  +  ++L  W +M+  Y     GK+A+ L+
Sbjct: 301 GFDRDFAMQNNLISMFTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLY 360

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
             M+  G  PDR  F +V+ +C+  G + EG    +         +  +   +V++  + 
Sbjct: 361 KNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIHECSTSCGFEKDVILGTALVNMYAKC 420

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           G + +A +    +  K D   W  ++ A  +H
Sbjct: 421 GSLADAKKSFDGISNK-DVVSWSAMIAASAQH 451


>gi|449519412|ref|XP_004166729.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial-like [Cucumis sativus]
          Length = 781

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 191/521 (36%), Positives = 303/521 (58%), Gaps = 12/521 (2%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHN-QAWTVFV 101
           KG   +   L+  Y     + +AR +FDEMP RD VSW+ MI GY     +  QA  VFV
Sbjct: 203 KGDVFVGNALVTMYSRWEHLVDARKVFDEMPSRDRVSWSAMITGYAQEGDNGLQAILVFV 262

Query: 102 EMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
           +MVR  V  +   ++  L  C   ++L     +H +A+K G E    V N L+  Y+ C 
Sbjct: 263 QMVREGVKFDNVPITGALSVCGHERNLELGKQIHCLAVKTGHETHTSVGNVLISTYSKCE 322

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
           I +++A+ VF  +  +N +SWTT+I+ Y       G + +F +M L+GV  N  +F   +
Sbjct: 323 I-IEDAKAVFELINDRNVISWTTMISLYEE-----GAVSLFNKMRLDGVYPNDVTFIGLL 376

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
            A      V  G ++H   IK  F S L V NS++ MY +F+ + DA++ F E+  +++I
Sbjct: 377 HAITIRNMVEQGLMVHGLCIKADFVSELTVGNSLITMYAKFEFMQDASRVFIELPYREII 436

Query: 282 TWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSC--GQQVHA 338
           +WN +I+GY ++    E L  F     E + PN +TF S++ A +    +S   GQ+ H+
Sbjct: 437 SWNALISGYAQNALCQEALEAFLYAIME-YKPNEYTFGSVLNAISAGEDISLKHGQRCHS 495

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
            +++ GL+ +  ++ AL+DMYAK G+I +SQ++F+E S +    WT+++ GY  HG  + 
Sbjct: 496 HLIKVGLNVDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTALISGYAQHGDYES 555

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVV 457
            I+LF+EM K  ++PD ++F++VLTACS   +VD G ++F  M  D+ + P  E Y C+V
Sbjct: 556 VIKLFEEMEKERIKPDAVIFLSVLTACSRNRMVDMGRQFFNMMIKDHMIEPEGEHYSCMV 615

Query: 458 DLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG 517
           D+LGRAGR++EA E++  +P  P  S    LLGAC+ H    + +  A  ++  +P   G
Sbjct: 616 DMLGRAGRLEEAEEILARIPGGPGVSALQSLLGACRTHGNVEMAERIANDLMKKEPLESG 675

Query: 518 TYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEV 558
            Y+++SN+YA +G WE+ AK RK MR  G  KE+G SW++V
Sbjct: 676 PYVLMSNLYAQKGDWEKVAKVRKEMRERGVMKEIGFSWVDV 716



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 125/455 (27%), Positives = 234/455 (51%), Gaps = 21/455 (4%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           ++ +L+  Y   G +E A ++F  + + D+VSW  +++G   F     A +  + M  N 
Sbjct: 110 VSNSLMNMYCKSGQLERAFSVFQNLHDPDIVSWNTILSG---FEKSENALSFALRMNLNG 166

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V  ++ T ++ L  C   +       +H +A+K G +G ++V N+L+ +Y+     +D A
Sbjct: 167 VKFDSVTYTTALSFCLDGEEFLFGWQLHTLALKCGFKGDVFVGNALVTMYSRWEHLVD-A 225

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSG-NGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           R VF++M  ++ VSW+ +ITGYA  G NG   + VF +M+ EGV+ +    + A+  C  
Sbjct: 226 RKVFDEMPSRDRVSWSAMITGYAQEGDNGLQAILVFVQMVREGVKFDNVPITGALSVCGH 285

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  GK IH   +K G  ++  V N ++  Y + + + DA   F+ + ++++I+W T+
Sbjct: 286 ERNLELGKQIHCLAVKTGHETHTSVGNVLISTYSKCEIIEDAKAVFELINDRNVISWTTM 345

Query: 287 IAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           I+ YE+   S    +F+KM+ +   PN  TF  ++ A      +  G  VH   ++    
Sbjct: 346 ISLYEEGAVS----LFNKMRLDGVYPNDVTFIGLLHAITIRNMVEQGLMVHGLCIKADFV 401

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
             L + N+LI MYAK   + D+ ++F E+  R++++W +++ GY  +   +EA+E F   
Sbjct: 402 SELTVGNSLITMYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYA 461

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDY------NVNPNKEIYGCVVDLL 460
           +    +P+   F +VL A S AG  D  LK+ +  + +      NV+P   I G ++D+ 
Sbjct: 462 IME-YKPNEYTFGSVLNAIS-AG-EDISLKHGQRCHSHLIKVGLNVDPI--ISGALLDMY 516

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            + G ++E+  +      K  +  W  L+    +H
Sbjct: 517 AKRGSIQESQRVFNETS-KQSQFAWTALISGYAQH 550



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 126/473 (26%), Positives = 230/473 (48%), Gaps = 17/473 (3%)

Query: 62  IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNA--FTLSSVL 119
            +    LFD+ P  +  S+  ++  Y   +   Q+   F    R  ++ NA  FTL   L
Sbjct: 23  FQHDHNLFDQSPPPNAASFNRVLLNYLPRDGAFQSLRFFKNNFRWGLDGNADEFTLVLAL 82

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179
           KAC G   L     +HG  I  G    I V NSLM++Y      ++ A  VF ++   + 
Sbjct: 83  KACCGFPKLGRQ--IHGFVISSGFVSHITVSNSLMNMYCKSG-QLERAFSVFQNLHDPDI 139

Query: 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAA 239
           VSW T+++G+  S N    L     M L GV+ +  +++ A+  C       FG  +H  
Sbjct: 140 VSWNTILSGFEKSEN---ALSFALRMNLNGVKFDSVTYTTALSFCLDGEEFLFGWQLHTL 196

Query: 240 VIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS--E 297
            +K GF  ++ V N+++ MY R++ L DA + FDEM  +D ++W+ +I GY + G +  +
Sbjct: 197 ALKCGFKGDVFVGNALVTMYSRWEHLVDARKVFDEMPSRDRVSWSAMITGYAQEGDNGLQ 256

Query: 298 CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALID 357
            + +F +M  E    +    T  ++ C     L  G+Q+H   V+ G + + ++ N LI 
Sbjct: 257 AILVFVQMVREGVKFDNVPITGALSVCGHERNLELGKQIHCLAVKTGHETHTSVGNVLIS 316

Query: 358 MYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIV 417
            Y+KC  I D++ +F  ++DR++++WT+M+  Y      + A+ LF++M   GV P+ + 
Sbjct: 317 TYSKCEIIEDAKAVFELINDRNVISWTTMISLY-----EEGAVSLFNKMRLDGVYPNDVT 371

Query: 418 FMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMP 477
           F+ +L A +   +V++GL         +      +   ++ +  +   +++A  +   +P
Sbjct: 372 FIGLLHAITIRNMVEQGLMVHGLCIKADFVSELTVGNSLITMYAKFEFMQDASRVFIELP 431

Query: 478 FKPDESVWGPLLGACKEHRLPNLGKLAAL-RVLDLKPNMMGTYIILSNIYAAE 529
           ++   S W  L+    ++ L      A L  +++ KPN      +L+ I A E
Sbjct: 432 YREIIS-WNALISGYAQNALCQEALEAFLYAIMEYKPNEYTFGSVLNAISAGE 483


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 183/504 (36%), Positives = 289/504 (57%), Gaps = 3/504 (0%)

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           E+ P      + + AC   K+L +A  +HG       EG  +++NSL+ +Y  C  S+  
Sbjct: 46  ELAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCG-SVVE 104

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  VF+ M+ K+ VSWT+LI GYA +      +G+   ML    + N ++F+  ++A  +
Sbjct: 105 AHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGA 164

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
                 G  IHA  +K  +  ++ V +++LDMY R   +  A   FD++  K+ ++WN +
Sbjct: 165 YADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNAL 224

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+G+ + G  E  L +F++M+   F    FT++SI +  A + AL  G+ VHA +V+   
Sbjct: 225 ISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQ 284

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
                + N ++DMYAK G++ D++K+F  + ++DLVTW SM+  +  +G GKEA+  F+E
Sbjct: 285 KLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEE 344

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M KSG+  ++I F+ +LTACSH GLV EG  YF  + +YN+ P  E Y  VVDLLGRAG 
Sbjct: 345 MRKSGIYLNQITFLCILTACSHGGLVKEGKHYFDMIKEYNLEPEIEHYVTVVDLLGRAGL 404

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           +  A   I  MP +P  +VWG LL AC+ H+   +G+ AA  V  L P+  G  ++L NI
Sbjct: 405 LNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNI 464

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           YA+ G W+  A+ RK+M+  G KKE   SW+E+ + V  F+AND      + +Y + + +
Sbjct: 465 YASTGHWDAAARVRKMMKATGVKKEPACSWVEIGNSVHMFVANDDTHPRAEEIYKMWDEI 524

Query: 586 IRHMNETAYEPDID-CLIHDLEGE 608
              + +  Y PD+D  L+H  E E
Sbjct: 525 SMKIRKEGYVPDMDYVLLHVDEQE 548



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 101/322 (31%), Positives = 165/322 (51%), Gaps = 2/322 (0%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           +G + L  +LI  Y   G + EA  +FD+M ++D+VSWT +IAGY   +   +A  +   
Sbjct: 83  EGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPG 142

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M++    PN FT +S+LKA            +H +A+K      +YV ++L+D+YA C  
Sbjct: 143 MLKGRFKPNGFTFASLLKAAGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCG- 201

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            MD A  VF+ +  KN VSW  LI+G+A  G+G   L VF EM   G E   +++S    
Sbjct: 202 KMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFS 261

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
             A  G +  GK +HA ++K        V N++LDMY +   + DA + F+ +  KDL+T
Sbjct: 262 GLAGIGALEQGKWVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVT 321

Query: 283 WNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           WN+++  + + G   E ++ F +M+      N  TF  I+ AC+    +  G+     I 
Sbjct: 322 WNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEGKHYFDMIK 381

Query: 342 RRGLDGNLALANALIDMYAKCG 363
              L+  +     ++D+  + G
Sbjct: 382 EYNLEPEIEHYVTVVDLLGRAG 403



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 112/245 (45%), Gaps = 17/245 (6%)

Query: 299 LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDM 358
           L+    + S   +P    + + I ACA    L   +++H  +     +G+  L N+LI +
Sbjct: 36  LHDLDHLDSGELAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHL 95

Query: 359 YAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVF 418
           Y KCG++ ++ K+F +M  +D+V+WTS++ GY  +    EAI L   M+K   +P+   F
Sbjct: 96  YCKCGSVVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTF 155

Query: 419 MAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIY--GCVVDLLGRAGRVKEAYELIKSM 476
            ++L A       D G+           + ++++Y    ++D+  R G++  A  +   +
Sbjct: 156 ASLLKAA--GAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKL 213

Query: 477 PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN-MMGTYIILSNIYAA------- 528
             K   S W  L+           G+ A +   +++ N    T+   S+I++        
Sbjct: 214 DSKNGVS-WNALISGFAR---KGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGAL 269

Query: 529 -EGKW 532
            +GKW
Sbjct: 270 EQGKW 274


>gi|297833652|ref|XP_002884708.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297330548|gb|EFH60967.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1028

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 196/553 (35%), Positives = 318/553 (57%), Gaps = 8/553 (1%)

Query: 52   LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
            L+  Y   G +E+AR +F+ M +RD VSW  +I GY      ++A+ +F+ M    +  +
Sbjct: 469  LVDMYAKCGALEDARQIFEHMCDRDNVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVSD 528

Query: 112  AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
               L+S LKAC  +  L     VH +++K GL+  ++  +SL+D+Y+ C I +++AR VF
Sbjct: 529  GACLASTLKACTNVHGLYQGKQVHCLSVKCGLDRVLHTGSSLIDMYSKCGI-IEDARKVF 587

Query: 172  NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
            + M   + VS   LI GY+ + N    + +F+EML +GV  +  +F+  V AC     ++
Sbjct: 588  SSMPEWSVVSMNALIAGYSQN-NLEEAVVLFQEMLTKGVNPSEITFATIVEACHKPESLT 646

Query: 232  FGKLIHAAVIKHGFGSNLPVMN-SILDMYCRFDCLSDANQYFDEMTE-KDLITWNTIIAG 289
             G   H  +IK GF S    +  S+L +Y     +++A   F E++  K ++ W  +++G
Sbjct: 647  LGTQFHGQIIKWGFSSEGEYLGISLLGLYMNSRRMAEACALFSELSSPKSIVLWTGMMSG 706

Query: 290  YEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
            + ++G   E L  + +M+ +   P+  TF +++  C+ L++L  G+ +H+ I     D +
Sbjct: 707  HSQNGFYEEALKFYKEMRHDGALPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLD 766

Query: 349  LALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
               +N LIDMYAKCG++  S ++F EM  R ++V+W S++ GY  +G+ ++A+++FD M 
Sbjct: 767  ELTSNTLIDMYAKCGDMKSSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMR 826

Query: 408  KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRV 466
            +S + PD I F+ VLTACSHAG V +G K F+ M   Y +    +   C+VDLLGR G +
Sbjct: 827  QSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYL 886

Query: 467  KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            +EA + I++   KPD  +W  LLGAC+ H     G++AA R+++L+P     Y++LSNIY
Sbjct: 887  QEADDFIEAQNLKPDARLWSSLLGACRIHGDDMRGEIAAERLIELEPQNSSAYVLLSNIY 946

Query: 527  AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
            A++G+WEE    RK MR  G KK  G SWI+V  +   F A D+  S    +   LE L 
Sbjct: 947  ASQGRWEEANALRKAMRDRGVKKVPGYSWIDVGQRRHIFAAGDQSHSDIGKIEMFLEDLY 1006

Query: 587  RHMNETA-YEPDI 598
              M + A   PDI
Sbjct: 1007 DLMKDDAVVNPDI 1019



 Score =  252 bits (643), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 151/450 (33%), Positives = 240/450 (53%), Gaps = 9/450 (2%)

Query: 45  PSILA-TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           P  LA   +I +Y   G +++AR LF EMP  DVV+W VMI+G+    C   A   F+ M
Sbjct: 259 PDHLAFVTVINTYISLGKLKDARLLFGEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNM 318

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
            ++ V     TL SVL A   + +L    +VH  AIK GL  +IYV +SL+ +Y+ C   
Sbjct: 319 RKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKC-EK 377

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           M+ A  VF  ++ +NDV W  +I GYAH+G  +  + +F +M   G  ++ ++F+  +  
Sbjct: 378 MEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLST 437

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           CA +  +  G   H+ +IK     NL V N+++DMY +   L DA Q F+ M ++D ++W
Sbjct: 438 CAVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFEHMCDRDNVSW 497

Query: 284 NTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           NTII GY +    SE  ++F +M S     +     S + AC  +  L  G+QVH   V+
Sbjct: 498 NTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLYQGKQVHCLSVK 557

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            GLD  L   ++LIDMY+KCG I D++K+FS M +  +V+  +++ GY +  + +EA+ L
Sbjct: 558 CGLDRVLHTGSSLIDMYSKCGIIEDARKVFSSMPEWSVVSMNALIAGY-SQNNLEEAVVL 616

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG- 461
           F EM+  GV P  I F  ++ AC     +  G ++   +  +  +   E  G  + LLG 
Sbjct: 617 FQEMLTKGVNPSEITFATIVEACHKPESLTLGTQFHGQIIKWGFSSEGEYLG--ISLLGL 674

Query: 462 --RAGRVKEAYELIKSMPFKPDESVWGPLL 489
              + R+ EA  L   +       +W  ++
Sbjct: 675 YMNSRRMAEACALFSELSSPKSIVLWTGMM 704



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 119/444 (26%), Positives = 225/444 (50%), Gaps = 3/444 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + ++L+  Y     +E A  +F+ + ER+ V W  MI GY      ++   +F++M  + 
Sbjct: 364 VGSSLVSMYSKCEKMEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSG 423

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
            N + FT +S+L  C     L   +  H + IK+ L  +++V N+L+D+YA C  ++++A
Sbjct: 424 YNIDDFTFTSLLSTCAVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCG-ALEDA 482

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R +F  M  +++VSW T+I GY    N      +F  M   G+  +    +  ++AC + 
Sbjct: 483 RQIFEHMCDRDNVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNV 542

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  GK +H   +K G    L   +S++DMY +   + DA + F  M E  +++ N +I
Sbjct: 543 HGLYQGKQVHCLSVKCGLDRVLHTGSSLIDMYSKCGIIEDARKVFSSMPEWSVVSMNALI 602

Query: 288 AGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           AGY ++   E + +F +M ++  +P+  TF +I+ AC    +L+ G Q H  I++ G   
Sbjct: 603 AGYSQNNLEEAVVLFQEMLTKGVNPSEITFATIVEACHKPESLTLGTQFHGQIIKWGFSS 662

Query: 348 NLA-LANALIDMYAKCGNISDSQKIFSEMSD-RDLVTWTSMMIGYGAHGHGKEAIELFDE 405
               L  +L+ +Y     ++++  +FSE+S  + +V WT MM G+  +G  +EA++ + E
Sbjct: 663 EGEYLGISLLGLYMNSRRMAEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKE 722

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M   G  PD+  F+ VL  CS    + EG      +     + ++     ++D+  + G 
Sbjct: 723 MRHDGALPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGD 782

Query: 466 VKEAYELIKSMPFKPDESVWGPLL 489
           +K + ++   M  + +   W  L+
Sbjct: 783 MKSSSQVFDEMRRRSNVVSWNSLI 806



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 114/445 (25%), Positives = 203/445 (45%), Gaps = 39/445 (8%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L   ++  Y     +  A   F+ + E+DV +W  M++ Y+S     +    FV +  N 
Sbjct: 97  LGNAIVDLYAKCAQVSYAEKQFNSL-EKDVTAWNSMLSMYSSIGQPGKVLRSFVSLFENL 155

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + PN FT S VL       ++     +H   IK GLE + Y   +L+D+YA  C  + +A
Sbjct: 156 IFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAK-CDRLGDA 214

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           + VF+ +   N V WT L +GY  +G     + VF+ M  EG   +  +F   +      
Sbjct: 215 QRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMRGEGHRPDHLAFVTVINT---- 270

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
            ++S GK                              L DA   F EM   D++ WN +I
Sbjct: 271 -YISLGK------------------------------LKDARLLFGEMPSPDVVAWNVMI 299

Query: 288 AGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           +G+ K G     +  F  M+         T  S+++A   +A L  G  VHA  ++ GL 
Sbjct: 300 SGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLA 359

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            N+ + ++L+ MY+KC  +  + K+F  + +R+ V W +M+ GY  +G   + +ELF +M
Sbjct: 360 SNIYVGSSLVSMYSKCEKMEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDM 419

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
             SG   D   F ++L+ C+ +  ++ G ++   +    +  N  +   +VD+  + G +
Sbjct: 420 KSSGYNIDDFTFTSLLSTCAVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGAL 479

Query: 467 KEAYELIKSMPFKPDESVWGPLLGA 491
           ++A ++ + M  + D   W  ++G 
Sbjct: 480 EDARQIFEHMCDR-DNVSWNTIIGG 503



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 141/295 (47%), Gaps = 26/295 (8%)

Query: 201 VFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYC 260
           VF EM        P+  ++A+R          GK +H+  +  G  S   + N+I+D+Y 
Sbjct: 64  VFDEM--------PHRLALALR---------IGKAVHSKSLILGIDSEGRLGNAIVDLYA 106

Query: 261 RFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTS 319
           +   +S A + F+ + EKD+  WN++++ Y   G   + L  F  +      PN FTF+ 
Sbjct: 107 KCAQVSYAEKQFNSL-EKDVTAWNSMLSMYSSIGQPGKVLRSFVSLFENLIFPNKFTFSI 165

Query: 320 IIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD 379
           +++  A    +  G+Q+H  +++ GL+ N     AL+DMYAKC  + D+Q++F  + D +
Sbjct: 166 VLSTSARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRLGDAQRVFDGIVDPN 225

Query: 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439
            V WT +  GY   G  +EA+ +F+ M   G RPD + F+ V+      G + +    F 
Sbjct: 226 TVCWTCLFSGYVKAGLPEEAVIVFERMRGEGHRPDHLAFVTVINTYISLGKLKDARLLFG 285

Query: 440 SMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM---PFKPDESVWGPLLGA 491
            M     +P+   +  ++   G+ G    A E   +M     K   S  G +L A
Sbjct: 286 EMP----SPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLSA 336



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 160/357 (44%), Gaps = 39/357 (10%)

Query: 134 VHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSG 193
           VH  ++  G++    + N+++D+YA C   +  A   FN ++ K+  +W ++++ Y+  G
Sbjct: 82  VHSKSLILGIDSEGRLGNAIVDLYAKCA-QVSYAEKQFNSLE-KDVTAWNSMLSMYSSIG 139

Query: 194 NGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMN 253
                L  F  +    +  N ++FSI +   A    V FG+ IH ++IK G   N     
Sbjct: 140 QPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGLERNSYCGG 199

Query: 254 SILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSP 312
           +++DMY + D L DA + FD + + + + W  + +GY K+G   E + +F +M+ E   P
Sbjct: 200 ALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMRGEGHRP 259

Query: 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIF 372
           +   F ++                                   I+ Y   G + D++ +F
Sbjct: 260 DHLAFVTV-----------------------------------INTYISLGKLKDARLLF 284

Query: 373 SEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD 432
            EM   D+V W  M+ G+G  G    AIE F  M KS V+  R    +VL+A      +D
Sbjct: 285 GEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLD 344

Query: 433 EGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
            GL          +  N  +   +V +  +  +++ A ++ +++  + D  +W  ++
Sbjct: 345 LGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEERND-VLWNAMI 400



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 169/356 (47%), Gaps = 40/356 (11%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S+++ N + + + +  +EEA  LF EM  +                              
Sbjct: 594 SVVSMNALIAGYSQNNLEEAVVLFQEMLTKG----------------------------- 624

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGL--EGSIYVENSLMDVYATCCIS 163
             VNP+  T +++++AC   +SL+     HG  IK G   EG  Y+  SL+ +Y      
Sbjct: 625 --VNPSEITFATIVEACHKPESLTLGTQFHGQIIKWGFSSEGE-YLGISLLGLYMN-SRR 680

Query: 164 MDNARLVFNDMKW-KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
           M  A  +F+++   K+ V WT +++G++ +G     L  +KEM  +G   +  +F   +R
Sbjct: 681 MAEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGALPDQATFVTVLR 740

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLI 281
            C+    +  G+ IH+ +       +    N+++DMY +   +  ++Q FDEM  + +++
Sbjct: 741 VCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKSSSQVFDEMRRRSNVV 800

Query: 282 TWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           +WN++I GY K+G +E  L +F  M+     P+  TF  ++ AC+    +S G+++   +
Sbjct: 801 SWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMM 860

Query: 341 V-RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHG 394
           + + G++  +     ++D+  + G + ++       + + D   W+S++     HG
Sbjct: 861 IGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHG 916


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 183/554 (33%), Positives = 320/554 (57%), Gaps = 13/554 (2%)

Query: 67  TLFDEMPER-DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGM 125
           TLF+   ++ DV SW  +IA         +A   F  M +  + P   +    +KAC  +
Sbjct: 30  TLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSL 89

Query: 126 KSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTL 185
             + +    H  A   G +  I+V ++L+ +Y+TC   +++AR VF+++  ++ VSWT++
Sbjct: 90  FDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCG-KLEDARKVFDEIPKRDIVSWTSM 148

Query: 186 ITGYAHSGNGYGGLGVFKEMLLE------GVEMNPYSFSIAVRACASTGWVSFGKLIHAA 239
           I GY  +GN    + +FK++L++       + ++       + AC+        + IH+ 
Sbjct: 149 IRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSF 208

Query: 240 VIKHGFGSNLPVMNSILDMYCRFD--CLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SS 296
           VIK GF   + V N++LD Y +     ++ A + FD++ +KD +++N+I++ Y +SG S+
Sbjct: 209 VIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSN 268

Query: 297 ECLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
           E   +F ++ K++  + N  T ++++ A +   AL  G+ +H  ++R GL+ ++ +  ++
Sbjct: 269 EAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSI 328

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           IDMY KCG +  ++K F  M ++++ +WT+M+ GYG HGH  +A+ELF  M+ SGVRP+ 
Sbjct: 329 IDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNY 388

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
           I F++VL ACSHAGL  EG ++F +M   + V P  E YGC+VDLLGRAG +++AY+LI+
Sbjct: 389 ITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQ 448

Query: 475 SMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEE 534
            M  KPD  +W  LL AC+ H+   L +++  R+ +L  +  G Y++LS+IYA  G+W++
Sbjct: 449 RMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKD 508

Query: 535 FAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAY 594
             + R IM+  G  K  G S +E+  +V  F+  D+     + +Y  L  L R + E  Y
Sbjct: 509 VERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGY 568

Query: 595 EPDIDCLIHDLEGE 608
             +   + HD++ E
Sbjct: 569 VSNTSSVCHDVDEE 582



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/357 (29%), Positives = 182/357 (50%), Gaps = 11/357 (3%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +++ LI  Y   G +E+AR +FDE+P+RD+VSWT MI GY        A ++F +++ +E
Sbjct: 113 VSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNALDAVSLFKDLLVDE 172

Query: 108 VNP------NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
            +       ++  L SV+ AC  + +      +H   IK G +  + V N+L+D YA   
Sbjct: 173 NDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGG 232

Query: 162 I-SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG-VEMNPYSFSI 219
              +  AR +F+ +  K+ VS+ ++++ YA SG       VF+ ++    V  N  + S 
Sbjct: 233 EGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLST 292

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
            + A + +G +  GK IH  VI+ G   ++ V  SI+DMYC+   +  A + FD M  K+
Sbjct: 293 VLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKN 352

Query: 280 LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG-QQVH 337
           + +W  +IAGY   G +++ L +F  M      PN  TF S++AAC+       G +  +
Sbjct: 353 VRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFN 412

Query: 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAH 393
           A   R G++  L     ++D+  + G +  +  +   M  + D + W+S++     H
Sbjct: 413 AMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIH 469



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 42/76 (55%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I+ T++I  Y   G +E AR  FD M  ++V SWT MIAGY       +A  +F  M+ +
Sbjct: 323 IVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDS 382

Query: 107 EVNPNAFTLSSVLKAC 122
            V PN  T  SVL AC
Sbjct: 383 GVRPNYITFVSVLAAC 398


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 190/560 (33%), Positives = 316/560 (56%), Gaps = 54/560 (9%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCH-NQAWTV 99
           IP   ++    ++  +   G I EAR LFD+MP R+VV+W  MIA Y   NCH ++A ++
Sbjct: 228 IPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQ-NCHVDEAISL 286

Query: 100 FVEMVRNEVNPNAFTLSSVLKACKGMKSLSNA-ALVHGMAIKEGLEGSIYVENSLMDVYA 158
           F+EM       N+ + ++V+     M  L  A  L++ M  +     ++  + +++  Y 
Sbjct: 287 FMEMPEK----NSISWTTVINGYVRMGKLDEARQLLNQMPYR-----NVAAQTAMISGYV 337

Query: 159 TCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFS 218
                MD+AR +FN +  ++ V W T+I GY+  G     L +FK+M+ + +        
Sbjct: 338 QN-KRMDDARQIFNQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQMVKKDI-------- 388

Query: 219 IAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK 278
                     W                       N+++  Y +   +  A + F+EM EK
Sbjct: 389 --------VSW-----------------------NTMVASYAQVGQMDAAIKIFEEMKEK 417

Query: 279 DLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
           ++++WN++I+G  ++GS  + L  F  M  E   P+  TF   +++CA LAAL  G+Q+H
Sbjct: 418 NIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLH 477

Query: 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
             +++ G   +L ++NALI MYAKCG+IS ++ +F ++   D+V+W S++  Y  +G+G+
Sbjct: 478 QLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGR 537

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCV 456
           EA++LF +M   GV PD + F+ +L+ACSH GL+D+GLK FK M   YN+ P  E Y C+
Sbjct: 538 EALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACM 597

Query: 457 VDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMM 516
           VDLLGRAGR++EA++L++ M    +  +WG LLGAC+ H    L K AA ++L+ +P+  
Sbjct: 598 VDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFAAEKLLEFEPHKT 657

Query: 517 GTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQ 576
             Y++LSN+ A  G+W+E A+ R++M+  G++K+ G SWIE++++V  F++ D       
Sbjct: 658 SNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWIELQNRVHAFLSEDPAHPRAV 717

Query: 577 YVYGVLEMLIRHMNETAYEP 596
            +  +L  L  HM  TA  P
Sbjct: 718 ELCHILRSLTAHMRNTAKCP 737



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 129/475 (27%), Positives = 223/475 (46%), Gaps = 81/475 (17%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P+   +   ++I +Y     +EEAR LFD+MP RD+ SWT+MI  YT      +A  +F
Sbjct: 72  MPQRNIVSWNSMIAAYLHNDRVEEARQLFDKMPTRDLYSWTLMITCYTRNGELAKARNLF 131

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
             ++  + NP           C         A+V G           Y +N         
Sbjct: 132 -NLLPYKWNP---------VCCN--------AMVAG-----------YAKNR-------- 154

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
               D AR +F+ M  K+ VSW +++TGY  +G    GL  F+EM     E +  S+++ 
Sbjct: 155 --QFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEM----AERDVVSWNLM 208

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSI--LDMYC---RFDCLSDANQYFDEM 275
           V      G+V  G L  +      F   +P  N++  + M C   RF  +++A + FD+M
Sbjct: 209 V-----DGFVEVGDLNSS----WEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQM 259

Query: 276 TEKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334
             ++++ WN +IA Y +     E +++F +M  +    N  ++T++I     +  L   +
Sbjct: 260 PIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEK----NSISWTTVINGYVRMGKLDEAR 315

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
           Q+   +  R    N+A   A+I  Y +   + D+++IF+++S RD+V W +M+ GY   G
Sbjct: 316 QLLNQMPYR----NVAAQTAMISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAGYSQCG 371

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYN-VNPNKEIY 453
              EA+ LF +MVK     D + +  ++ + +  G +D  +K F+ M + N V+ N  I 
Sbjct: 372 RMDEALHLFKQMVKK----DIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLIS 427

Query: 454 GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRV 508
           G   +  G      +++ L+     KPD+S +   L +C          LAAL+V
Sbjct: 428 GLTQN--GSYLDALKSFMLMGHEGQKPDQSTFACGLSSC--------AHLAALQV 472



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 120/253 (47%), Gaps = 17/253 (6%)

Query: 240 VIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSEC 298
           V +H    N    NS++  + +   +SDA Q FD M ++++++WN++IA Y       E 
Sbjct: 37  VFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEA 96

Query: 299 LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDM 358
             +F KM +     + +++T +I        L+  + +   +  +    N    NA++  
Sbjct: 97  RQLFDKMPTR----DLYSWTLMITCYTRNGELAKARNLFNLLPYKW---NPVCCNAMVAG 149

Query: 359 YAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVF 418
           YAK     +++++F  M  +DLV+W SM+ GY  +G  +  ++ F+EM +     D + +
Sbjct: 150 YAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAER----DVVSW 205

Query: 419 MAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPF 478
             ++      G ++   ++F+ +     NPN   +  ++    R G++ EA  L   MP 
Sbjct: 206 NLMVDGFVEVGDLNSSWEFFEKIP----NPNTVSWVTMLCGFARFGKIAEARRLFDQMPI 261

Query: 479 KPDESVWGPLLGA 491
           + +   W  ++ A
Sbjct: 262 R-NVVAWNAMIAA 273



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 143/329 (43%), Gaps = 54/329 (16%)

Query: 151 NSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGV 210
           NS++  +A     + +AR +F+ M  +N VSW ++I  Y H+        +F +M    +
Sbjct: 50  NSMISAFAKNG-RISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLFDKMPTRDL 108

Query: 211 EMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQ 270
               YS+++ +      G ++  + +   +    +  N    N+++  Y +     +A +
Sbjct: 109 ----YSWTLMITCYTRNGELAKARNLFNLL---PYKWNPVCCNAMVAGYAKNRQFDEARR 161

Query: 271 YFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAAL 330
            FD M  KDL++WN+++ GY ++G       F +  +ER                     
Sbjct: 162 LFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAER--------------------- 200

Query: 331 SCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY 390
                            ++   N ++D + + G+++ S + F ++ + + V+W +M+ G+
Sbjct: 201 -----------------DVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGF 243

Query: 391 GAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK 450
              G   EA  LFD+M    V    + + A++ A      VDE +  F  M +     N 
Sbjct: 244 ARFGKIAEARRLFDQMPIRNV----VAWNAMIAAYVQNCHVDEAISLFMEMPE----KNS 295

Query: 451 EIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
             +  V++   R G++ EA +L+  MP++
Sbjct: 296 ISWTTVINGYVRMGKLDEARQLLNQMPYR 324



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 17/138 (12%)

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
           N  I    K G I ++ K+F  M+ ++ VT  SM+  +  +G   +A +LFD M +  + 
Sbjct: 19  NLKITQLGKSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNI- 77

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG--CVVDLLGRAGRVKEAY 470
              + + +++ A  H   V+E  + F  M      P +++Y    ++    R G + +A 
Sbjct: 78  ---VSWNSMIAAYLHNDRVEEARQLFDKM------PTRDLYSWTLMITCYTRNGELAKAR 128

Query: 471 ELIKSMPFKPDESVWGPL 488
            L   +P+K     W P+
Sbjct: 129 NLFNLLPYK-----WNPV 141


>gi|356501823|ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 727

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 176/502 (35%), Positives = 301/502 (59%), Gaps = 5/502 (0%)

Query: 60  GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHN-QAWTVFVEMVRNEVNPNAFTLSSV 118
           G +E+AR +F+EMP+RD+ SWT +I G T +N    +A  +F +M    + P++  ++S+
Sbjct: 181 GSVEDARRMFEEMPDRDLASWTALICG-TMWNGECLEALLLFRKMRSEGLMPDSVIVASI 239

Query: 119 LKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKN 178
           L AC  ++++     +   A++ G E  +YV N+++D+Y  C   ++  R VF+ M + +
Sbjct: 240 LPACGRLEAVKLGMALQVCAVRSGFESDLYVSNAVIDMYCKCGDPLEAHR-VFSHMVYSD 298

Query: 179 DVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHA 238
            VSW+TLI GY+ +        ++  M+  G+  N    +  + A      +  GK +H 
Sbjct: 299 VVSWSTLIAGYSQNCLYQESYKLYIGMINVGLATNAIVATSVLPALGKLELLKQGKEMHN 358

Query: 239 AVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE- 297
            V+K G  S++ V ++++ MY     + +A   F+  ++KD++ WN++I GY   G  E 
Sbjct: 359 FVLKEGLMSDVVVGSALIVMYANCGSIKEAESIFECTSDKDIMVWNSMIVGYNLVGDFES 418

Query: 298 CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALID 357
               F ++      PN  T  SI+  C  + AL  G+++H  + + GL  N+++ N+LID
Sbjct: 419 AFFTFRRIWGAEHRPNFITVVSILPICTQMGALRQGKEIHGYVTKSGLGLNVSVGNSLID 478

Query: 358 MYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIV 417
           MY+KCG +   +K+F +M  R++ T+ +M+   G+HG G++ +  +++M + G RP+++ 
Sbjct: 479 MYSKCGFLELGEKVFKQMMVRNVTTYNTMISACGSHGQGEKGLAFYEQMKEEGNRPNKVT 538

Query: 418 FMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
           F+++L+ACSHAGL+D G   + SM NDY + PN E Y C+VDL+GRAG +  AY+ I  M
Sbjct: 539 FISLLSACSHAGLLDRGWLLYNSMINDYGIEPNMEHYSCMVDLIGRAGDLDGAYKFITRM 598

Query: 477 PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFA 536
           P  PD +V+G LLGAC+ H    L +L A R+L LK +  G Y++LSN+YA+  +WE+ +
Sbjct: 599 PMTPDANVFGSLLGACRLHNKVELTELLAERILQLKADDSGHYVLLSNLYASGKRWEDMS 658

Query: 537 KFRKIMRGMGSKKEVGMSWIEV 558
           K R +++  G +K+ G SWI+V
Sbjct: 659 KVRSMIKDKGLEKKPGSSWIQV 680



 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 120/458 (26%), Positives = 238/458 (51%), Gaps = 5/458 (1%)

Query: 39  PLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWT 98
           P  P   S  A+ L+  Y + G ++ A   F  +P + +++W  ++ G  +     +A  
Sbjct: 61  PTCPHSSS-FASQLVNVYVNFGSLQHAFLTFRALPHKPIIAWNAILRGLVAVGHFTKAIH 119

Query: 99  VFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA 158
            +  M+++ V P+ +T   VLKAC  + +L     VH   +    + ++YV+ +++D++A
Sbjct: 120 FYHSMLQHGVTPDNYTYPLVLKACSSLHALQLGRWVHE-TMHGKTKANVYVQCAVIDMFA 178

Query: 159 TCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFS 218
            C  S+++AR +F +M  ++  SWT LI G   +G     L +F++M  EG+  +    +
Sbjct: 179 KCG-SVEDARRMFEEMPDRDLASWTALICGTMWNGECLEALLLFRKMRSEGLMPDSVIVA 237

Query: 219 IAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK 278
             + AC     V  G  +    ++ GF S+L V N+++DMYC+     +A++ F  M   
Sbjct: 238 SILPACGRLEAVKLGMALQVCAVRSGFESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVYS 297

Query: 279 DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
           D+++W+T+IAGY ++    E   ++  M +   + N    TS++ A   L  L  G+++H
Sbjct: 298 DVVSWSTLIAGYSQNCLYQESYKLYIGMINVGLATNAIVATSVLPALGKLELLKQGKEMH 357

Query: 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
             +++ GL  ++ + +ALI MYA CG+I +++ IF   SD+D++ W SM++GY   G  +
Sbjct: 358 NFVLKEGLMSDVVVGSALIVMYANCGSIKEAESIFECTSDKDIMVWNSMIVGYNLVGDFE 417

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVV 457
            A   F  +  +  RP+ I  +++L  C+  G + +G +    +    +  N  +   ++
Sbjct: 418 SAFFTFRRIWGAEHRPNFITVVSILPICTQMGALRQGKEIHGYVTKSGLGLNVSVGNSLI 477

Query: 458 DLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           D+  + G ++   ++ K M  + + + +  ++ AC  H
Sbjct: 478 DMYSKCGFLELGEKVFKQMMVR-NVTTYNTMISACGSH 514


>gi|7413540|emb|CAB86020.1| putative protein [Arabidopsis thaliana]
 gi|9758453|dbj|BAB08982.1| selenium-binding protein-like [Arabidopsis thaliana]
          Length = 864

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 180/519 (34%), Positives = 300/519 (57%), Gaps = 11/519 (2%)

Query: 98  TVFVEMVRNEVNPNAFT--------LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYV 149
           +V     + EV+P  ++        +  +L+ C    ++  A   HG  I+  LEG + +
Sbjct: 31  SVLASYDQEEVSPGRYSNEFSNRNLVHEILQLCARNGAVMEAKACHGKIIRIDLEGDVTL 90

Query: 150 ENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG 209
            N L++ Y+ C   ++ AR VF+ M  ++ VSW T+I  Y  +      L +F EM  EG
Sbjct: 91  LNVLINAYSKCGF-VELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEG 149

Query: 210 VEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDAN 269
            + + ++ S  + AC         K +H   +K     NL V  ++LD+Y +   + DA 
Sbjct: 150 FKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAV 209

Query: 270 QYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLA 328
           Q F+ M +K  +TW++++AGY +     E L ++ + +      N FT +S+I AC+ LA
Sbjct: 210 QVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLA 269

Query: 329 ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMI 388
           AL  G+Q+HA I + G   N+ +A++ +DMYAKCG++ +S  IFSE+ +++L  W +++ 
Sbjct: 270 ALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIIS 329

Query: 389 GYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVN 447
           G+  H   KE + LF++M + G+ P+ + F ++L+ C H GLV+EG ++FK M   Y ++
Sbjct: 330 GFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLS 389

Query: 448 PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALR 507
           PN   Y C+VD+LGRAG + EAYELIKS+PF P  S+WG LL +C+ ++   L ++AA +
Sbjct: 390 PNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEK 449

Query: 508 VLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIA 567
           + +L+P   G +++LSNIYAA  +WEE AK RK++R    KK  G SWI+++DKV  F  
Sbjct: 450 LFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSV 509

Query: 568 NDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
            +      + +   L+ L+    +  Y+P ++  +HD+E
Sbjct: 510 GESGHPRIREICSTLDNLVIKFRKFGYKPSVEHELHDVE 548



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 107/348 (30%), Positives = 186/348 (53%), Gaps = 4/348 (1%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           +G   L   LI +Y   G +E AR +FD M ER +VSW  MI  YT     ++A  +F+E
Sbjct: 85  EGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLE 144

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M       + FT+SSVL AC           +H +++K  ++ ++YV  +L+D+YA C +
Sbjct: 145 MRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGM 204

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
             D A  VF  M+ K+ V+W++++ GY  + N    L +++      +E N ++ S  + 
Sbjct: 205 IKD-AVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVIC 263

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           AC++   +  GK +HA + K GFGSN+ V +S +DMY +   L ++   F E+ EK+L  
Sbjct: 264 ACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLEL 323

Query: 283 WNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI- 340
           WNTII+G+ K     E + +F KM+ +   PN  TF+S+++ C     +  G++    + 
Sbjct: 324 WNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMR 383

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMM 387
              GL  N+   + ++D+  + G +S++ ++   +  D     W S++
Sbjct: 384 TTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLL 431


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 188/563 (33%), Positives = 318/563 (56%), Gaps = 5/563 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A +L+  Y   G+++ A  +F +MP +DV SW  MI+G+        A  V   M    
Sbjct: 158 VAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEG 217

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V  +  T++S+L  C     + N  L+H   +K GL+  ++V N+L+++Y+     + +A
Sbjct: 218 VKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFG-RLQDA 276

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           ++VF+ M+ ++ VSW ++I  Y  + +    L  FK M L G+  +  +        +  
Sbjct: 277 QMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQL 336

Query: 228 GWVSFGKLIHAAVIKHG-FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
                 + I   VI+      ++ + N++++MY +   ++ A+  FD++  KD I+WNT+
Sbjct: 337 SDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTL 396

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFS-PNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           + GY ++G +SE ++ ++ M+  R + PN  T+ SII A + + AL  G ++HA +++  
Sbjct: 397 VTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNS 456

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           L  ++ +A  LID+Y KCG + D+  +F E+     V W +++   G HG G+EA++LF 
Sbjct: 457 LYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFK 516

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRA 463
           +M+   V+ D I F+++L+ACSH+GLVDEG K F  M  +Y + P+ + YGC+VDLLGRA
Sbjct: 517 DMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRA 576

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G +++AYEL+++MP +PD S+WG LL ACK +    LG LA+ R+L++    +G Y++LS
Sbjct: 577 GYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLS 636

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           NIYA   KWE   K R + R  G +K  G S + V  K   F   ++       +Y  L+
Sbjct: 637 NIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELK 696

Query: 584 MLIRHMNETAYEPDIDCLIHDLE 606
           +L   M    Y PD   +  D+E
Sbjct: 697 VLSAKMKSLGYVPDYSFVYQDIE 719



 Score =  242 bits (617), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 142/460 (30%), Positives = 249/460 (54%), Gaps = 20/460 (4%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSF-------NCHNQAWTV 99
           +L+T LI  Y   G I  +R+ FD + ++++ SW  +I+ Y  F       NC NQ   +
Sbjct: 55  VLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQ---L 111

Query: 100 FVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
           F       + P+ +T   +LKAC    SL +   VH    K G E  ++V  SL+ +Y+ 
Sbjct: 112 FSMCGGGHLRPDFYTFPPILKAC---VSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSR 168

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
             + +D A  VF DM  K+  SW  +I+G+  +GN  G LGV   M  EGV+M+  + + 
Sbjct: 169 YGV-LDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVAS 227

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
            +  CA +  V  G LIH  V+KHG  S++ V N++++MY +F  L DA   FD+M  +D
Sbjct: 228 ILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRD 287

Query: 280 LITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           L++WN+IIA YE++   S  L  F  M+     P+  T  S+ +  + L+     + +  
Sbjct: 288 LVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILG 347

Query: 339 GIVRRG-LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
            ++RR  LD ++ + NAL++MYAK G ++ +  +F ++  +D ++W +++ GY  +G   
Sbjct: 348 FVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLAS 407

Query: 398 EAIELFDEMVK-SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCV 456
           EAI+ ++ M +     P++  +++++ A SH G + +G+K    +   ++  +  +  C+
Sbjct: 408 EAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCL 467

Query: 457 VDLLGRAGRVKEAYELIKSMPFKPDESV-WGPLLGACKEH 495
           +DL G+ GR+++A  L   +P   D SV W  ++ +   H
Sbjct: 468 IDLYGKCGRLEDAMSLFYEIP--RDTSVPWNAIIASLGIH 505



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/305 (21%), Positives = 163/305 (53%), Gaps = 12/305 (3%)

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           V+  K +HA ++  G   N+ +   ++++Y     +S +   FD + +K++ +WN+II+ 
Sbjct: 35  VNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISA 94

Query: 290 YEKSG----SSECLN-MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           Y + G    +  C+N +FS        P+ +TF  I+ AC +L     G++VH  + + G
Sbjct: 95  YVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKVHCCVFKMG 151

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
            + ++ +A +L+ +Y++ G +  + K+F +M  +D+ +W +M+ G+  +G+   A+ + +
Sbjct: 152 FEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLN 211

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
            M   GV+ D I   ++L  C+ +  V  G+     +  + ++ +  +   ++++  + G
Sbjct: 212 RMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFG 271

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNMMGTYIIL 522
           R+++A  +   M  + D   W  ++ A +++  P+  L     +++  ++P+++ T + L
Sbjct: 272 RLQDAQMVFDQMEVR-DLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLL-TVVSL 329

Query: 523 SNIYA 527
           ++I++
Sbjct: 330 TSIFS 334



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 120/255 (47%), Gaps = 6/255 (2%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF--VEMV 104
           ++   L+  Y   G +  A T+FD++P +D +SW  ++ GYT     ++A   +  +E  
Sbjct: 360 VIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEEC 419

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
           R+ + PN  T  S++ A   + +L     +H   IK  L   ++V   L+D+Y  C   +
Sbjct: 420 RDTI-PNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCG-RL 477

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           ++A  +F ++     V W  +I      G G   L +FK+ML E V+ +  +F   + AC
Sbjct: 478 EDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSAC 537

Query: 225 ASTGWVSFGKLIHAAVIK-HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLIT 282
           + +G V  G+     + K +G   +L     ++D+  R   L  A +    M  + D   
Sbjct: 538 SHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASI 597

Query: 283 WNTIIAGYEKSGSSE 297
           W  +++  +  G++E
Sbjct: 598 WGALLSACKIYGNAE 612


>gi|302768409|ref|XP_002967624.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
 gi|300164362|gb|EFJ30971.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
          Length = 795

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 185/570 (32%), Positives = 324/570 (56%), Gaps = 8/570 (1%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           +G  ++   +++ Y   G +E+A  +FD + + +V SWT++IA Y       +   +   
Sbjct: 149 EGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFSWTIIIAAYAQNGHCMEVLRLLSR 208

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKE-GLEGSIYVENSLMDVYATCC 161
           M +  V P+ +T ++VL AC  + +L  A ++H   I   GL+    V  +L+++Y  C 
Sbjct: 209 MNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISSTGLDRDAAVGTALINLYGKCG 268

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
            +++ A  VF  +  K+ VSW+++I  +A SG     + +   M LEGV  N  +F   +
Sbjct: 269 -ALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAIQLLMLMDLEGVRPNNVTFVNVL 327

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
            A  S     +GK IHA +++ G+  ++ + ++++ MYC +  +  A   F+   E+D++
Sbjct: 328 EAVTSLKAFQYGKEIHARIVQAGYSDDVCLTSALVKMYCNWGWVETARSIFESSRERDVV 387

Query: 282 TWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           +W+++IAGY ++ S +  L++F +M+ +   PN  TF S I ACA + AL  G Q+H  +
Sbjct: 388 SWSSMIAGYSQNESPARALSLFREMEVDGVQPNSVTFVSAIDACAGVGALRRGTQLHERV 447

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
              GLD ++ +A AL+++Y KCG + +++ +F  M  ++L+TWTS+ + YG +GHG  ++
Sbjct: 448 RCLGLDKDVPVATALVNLYGKCGRLEEAEAVFLGMKKKNLLTWTSIAMAYGQNGHGSRSL 507

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDL 459
           +L   M   G++PD IVF+A+L +C++AG + +GL Y+  M  D+ + P  E  GC+VD+
Sbjct: 508 KLLHGMELQGMKPDGIVFVAILVSCNYAGQMSKGLHYYNLMTQDFGIAPAVEHCGCMVDI 567

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
           LGRAG+++ A +LI +M F+   + W  LL ACK H        AA ++  L+P     Y
Sbjct: 568 LGRAGKLEAAEQLINTMKFESSLA-WMMLLTACKAHNDTARAARAAEKIFQLEPKNATPY 626

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSH--TQY 577
           ++LS+++ A G WE   + R+ M G G ++ +G S IE+ D+V  F+A   +  H     
Sbjct: 627 VLLSSVFCAAGSWEAAEETRRRMDGRGVQRLLGRSSIEIGDRVHEFVAASDVLPHHLVGE 686

Query: 578 VYGVLEMLIRHMNETAYEPDIDCL-IHDLE 606
           ++  LE L R M    Y PD   + + D+E
Sbjct: 687 IFAALEKLGREMQGAGYVPDATAVRLRDVE 716



 Score =  224 bits (572), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 139/507 (27%), Positives = 268/507 (52%), Gaps = 12/507 (2%)

Query: 29  VKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYT 88
           +++S +Q + P      S+L   +I+ Y   G  + A  +FD M +++VV+WT +I+ +T
Sbjct: 37  MRESLLQDERP----DESLLENIVIQMYLRCGCTDLALDVFDRMKDQNVVAWTSLISAFT 92

Query: 89  SFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGM-KSLSNAALVHGMAIKEGLEGSI 147
                  A  +F +M+ + V+P+  T +S+L    G  ++L     VH   ++ G EG  
Sbjct: 93  FAGHFGDAMVLFRKMLLSGVSPDRITFTSILLKWSGRERNLDEGKRVHSHIMQTGYEGDR 152

Query: 148 YVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLL 207
            V N ++++Y  C   ++ A  VF+ ++  N  SWT +I  YA +G+    L +   M  
Sbjct: 153 MVMNLVVEMYGKCG-DVEQAGNVFDSIQDPNVFSWTIIIAAYAQNGHCMEVLRLLSRMNQ 211

Query: 208 EGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH-GFGSNLPVMNSILDMYCRFDCLS 266
            GV+ + Y+F+  + AC + G +   K++HAA I   G   +  V  +++++Y +   L 
Sbjct: 212 AGVKPDGYTFTTVLGACTAVGALEEAKILHAATISSTGLDRDAAVGTALINLYGKCGALE 271

Query: 267 DANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACA 325
           +A   F ++  KD+++W+++IA + +SG ++  + +   M  E   PN  TF +++ A  
Sbjct: 272 EAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAIQLLMLMDLEGVRPNNVTFVNVLEAVT 331

Query: 326 TLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTS 385
           +L A   G+++HA IV+ G   ++ L +AL+ MY   G +  ++ IF    +RD+V+W+S
Sbjct: 332 SLKAFQYGKEIHARIVQAGYSDDVCLTSALVKMYCNWGWVETARSIFESSRERDVVSWSS 391

Query: 386 MMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYN 445
           M+ GY  +     A+ LF EM   GV+P+ + F++ + AC+  G +  G +  + +    
Sbjct: 392 MIAGYSQNESPARALSLFREMEVDGVQPNSVTFVSAIDACAGVGALRRGTQLHERVRCLG 451

Query: 446 VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKE--HRLPNLGKL 503
           ++ +  +   +V+L G+ GR++EA  +   M  K +   W  +  A  +  H   +L  L
Sbjct: 452 LDKDVPVATALVNLYGKCGRLEEAEAVFLGMK-KKNLLTWTSIAMAYGQNGHGSRSLKLL 510

Query: 504 AALRVLDLKPN-MMGTYIILSNIYAAE 529
             + +  +KP+ ++   I++S  YA +
Sbjct: 511 HGMELQGMKPDGIVFVAILVSCNYAGQ 537



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 121/459 (26%), Positives = 231/459 (50%), Gaps = 13/459 (2%)

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGL-----EGSIYVENSLMDVY 157
           M   E+       +++L AC  +++L     VHG+ ++E L          +EN ++ +Y
Sbjct: 1   MEAREIQAEISACAAILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMY 60

Query: 158 ATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSF 217
             C  + D A  VF+ MK +N V+WT+LI+ +  +G+    + +F++MLL GV  +  +F
Sbjct: 61  LRCGCT-DLALDVFDRMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITF 119

Query: 218 -SIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
            SI ++       +  GK +H+ +++ G+  +  VMN +++MY +   +  A   FD + 
Sbjct: 120 TSILLKWSGRERNLDEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQ 179

Query: 277 EKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ 335
           + ++ +W  IIA Y ++G   E L + S+M      P+ +TFT+++ AC  + AL   + 
Sbjct: 180 DPNVFSWTIIIAAYAQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKI 239

Query: 336 VHAG-IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
           +HA  I   GLD + A+  ALI++Y KCG + ++  +F ++ ++D+V+W+SM+  +   G
Sbjct: 240 LHAATISSTGLDRDAAVGTALINLYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSG 299

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG 454
             K AI+L   M   GVRP+ + F+ VL A +       G +    +     + +  +  
Sbjct: 300 QAKSAIQLLMLMDLEGVRPNNVTFVNVLEAVTSLKAFQYGKEIHARIVQAGYSDDVCLTS 359

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLP--NLGKLAALRVLDLK 512
            +V +    G V+ A  + +S   + D   W  ++    ++  P   L     + V  ++
Sbjct: 360 ALVKMYCNWGWVETARSIFES-SRERDVVSWSSMIAGYSQNESPARALSLFREMEVDGVQ 418

Query: 513 PNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEV 551
           PN + T++   +  A  G      +  + +R +G  K+V
Sbjct: 419 PNSV-TFVSAIDACAGVGALRRGTQLHERVRCLGLDKDV 456


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 205/607 (33%), Positives = 322/607 (53%), Gaps = 66/607 (10%)

Query: 47  ILATNLIKSY-FDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           ++ T ++  Y  D  +++ A   F+ M ER+  +W+ MIA  +     + A  V+     
Sbjct: 260 VIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVY----- 314

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMA----------IKEGLEGSIYVE-NSLM 154
            E +P    + S+  AC+        AL+ G+A          + E +   I V  N+L+
Sbjct: 315 -ERDP----VKSI--ACR-------TALITGLAQCGRIDDARILFEQIPEPIVVSWNALI 360

Query: 155 DVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP 214
             Y    + ++ A+ +F+ M ++N +SW  +I GYA +G     LG+ +E+   G+  + 
Sbjct: 361 TGYMQNGM-VNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSL 419

Query: 215 YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMY--CRF---------- 262
            S +    AC++   +  G  +H+  +K G   N    N+++ MY  CR           
Sbjct: 420 SSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSR 479

Query: 263 -------------------DCLSDANQYFDEMTEKDLITWNTIIAGYEKS-GSSECLNMF 302
                              D L +A   FD M  +D ++W TII+ Y  +  S+E +  F
Sbjct: 480 MVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAF 539

Query: 303 SKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362
             M  E   PN    T ++  C +L A   GQQ+H   ++ G+D  L +ANALI MY KC
Sbjct: 540 KTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKC 599

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
           G  +DS++IF  M +RD+ TW +++ GY  HG G+EAI+++  M  +GV P+ + F+ +L
Sbjct: 600 G-CADSRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLL 658

Query: 423 TACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481
            ACSHAGLVDEG K+FKSM+ DY + P  E Y C+VDLLGR G V+ A + I  MP +PD
Sbjct: 659 NACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPD 718

Query: 482 ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKI 541
             +W  LLGACK H+   +GK AA ++  ++P+  G Y++LSNIY++ G W E A+ RKI
Sbjct: 719 TVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKI 778

Query: 542 MRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCL 601
           M+  G  KE G SW +++DK+  F+  DK     + +   LE L   +  T Y PD + +
Sbjct: 779 MKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYVPDTEFV 838

Query: 602 IHDLEGE 608
           +HD++ E
Sbjct: 839 LHDIDEE 845



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 124/406 (30%), Positives = 211/406 (51%), Gaps = 15/406 (3%)

Query: 64  EARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACK 123
           +AR LF++MPER++VSWTVMI+GY     H +AW +F +M R  + P+    +S L A K
Sbjct: 176 DARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVK 235

Query: 124 GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWT 183
           G+ +L     +  +A+K G E  + +  ++++VY+     +D A   F  M  +N+ +W+
Sbjct: 236 GLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWS 295

Query: 184 TLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH 243
           T+I   +H G     + V+        E +P   SIA R    TG    G++  A ++  
Sbjct: 296 TMIAALSHGGRIDAAIAVY--------ERDPVK-SIACRTALITGLAQCGRIDDARILFE 346

Query: 244 GFGSNLPV-MNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNM 301
                + V  N+++  Y +   +++A + FD+M  ++ I+W  +IAGY ++G S E L +
Sbjct: 347 QIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGL 406

Query: 302 FSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK 361
             ++      P+  + TSI  AC+ + AL  G QVH+  V+ G   N    NALI MY K
Sbjct: 407 LQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGK 466

Query: 362 CGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAV 421
           C N+  ++++FS M  +D+V+W S +     +    EA   FD M+      D + +  +
Sbjct: 467 CRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSR----DDVSWTTI 522

Query: 422 LTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
           ++A +HA   +E +  FK+M   +  PN  I   ++ + G  G  K
Sbjct: 523 ISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASK 568



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 121/409 (29%), Positives = 199/409 (48%), Gaps = 61/409 (14%)

Query: 41  IPKGPSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTV 99
           IP+ P +++ N LI  Y   G++ EA+ LFD+MP R+ +SW  MIAGY       +A  +
Sbjct: 348 IPE-PIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGL 406

Query: 100 FVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
             E+ R+ + P+  +L+S+  AC  + +L     VH +A+K G + + +  N+L+ +Y  
Sbjct: 407 LQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGK 466

Query: 160 C-----------------CIS-------------MDNARLVFNDMKWKNDVSWTTLITGY 189
           C                  +S             +D AR  F++M  ++DVSWTT+I+ Y
Sbjct: 467 CRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAY 526

Query: 190 AHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNL 249
           AH+      +G FK M  E    N    +I +  C S G    G+ IH   IK G  S L
Sbjct: 527 AHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSEL 586

Query: 250 PVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSE 308
            V N+++ MY +  C +D+ + FD M E+D+ TWNTII GY + G   E + M+  M+S 
Sbjct: 587 IVANALISMYFKCGC-ADSRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESA 645

Query: 309 RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN------------ALI 356
              PN  TF  ++ AC+           HAG+V  G     +++              ++
Sbjct: 646 GVLPNEVTFVGLLNACS-----------HAGLVDEGWKFFKSMSQDYGLTPLPEHYACMV 694

Query: 357 DMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGH---GKEAIE 401
           D+  + G++  +++   +M  + D V W++++     H +   GK A E
Sbjct: 695 DLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAE 743



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 115/467 (24%), Positives = 207/467 (44%), Gaps = 43/467 (9%)

Query: 60  GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHN----QAWTVFVEMVRNEVNPNAFTL 115
           G + EAR +FD MP RD+++W  MI+ Y    CHN     A  ++  +    +   A  L
Sbjct: 48  GRVGEAREVFDAMPRRDIIAWNSMISAY----CHNGMPDAARDLYDAISGGNMRTGAILL 103

Query: 116 SS------VLKACKGMKSL--SNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS---- 163
           S       VL+A +    +   N    + M       G I +   L D   +  +S    
Sbjct: 104 SGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNS 163

Query: 164 ----------MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMN 213
                     M +AR +F  M  +N VSWT +I+GY    N      +F +M  EG+  +
Sbjct: 164 MLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPD 223

Query: 214 PYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR-FDCLSDANQYF 272
             +F+ A+ A    G +   + +    +K GF  ++ +  +IL++Y R    L  A ++F
Sbjct: 224 QSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFF 283

Query: 273 DEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALS- 331
           + M E++  TW+T+IA     G  +     + +      P      SI    A +  L+ 
Sbjct: 284 ESMIERNEYTWSTMIAALSHGGRID-----AAIAVYERDP----VKSIACRTALITGLAQ 334

Query: 332 CGQQVHAGIVRRGLDGNLALA-NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY 390
           CG+   A I+   +   + ++ NALI  Y + G +++++++F +M  R+ ++W  M+ GY
Sbjct: 335 CGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGY 394

Query: 391 GAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK 450
             +G  +EA+ L  E+ +SG+ P      ++  ACS+   ++ G +            N 
Sbjct: 395 AQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNS 454

Query: 451 EIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
                ++ + G+   ++ A ++   M  K D   W   L A  ++ L
Sbjct: 455 FACNALITMYGKCRNMEYARQVFSRMVTK-DIVSWNSFLAALVQNDL 500



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 114/287 (39%), Gaps = 80/287 (27%)

Query: 261 RFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSI 320
           R   + +A + FD M  +D+I WN++I+ Y  +G  +         S     N  T   +
Sbjct: 46  RLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAIS---GGNMRTGAIL 102

Query: 321 IAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNIS-------------- 366
           ++    L  +   ++V  G++ R    N    NA+I  Y + G+I+              
Sbjct: 103 LSGYGRLGRVLEARRVFDGMLER----NTVAWNAMISCYVQNGDITMARRLFDAMPSRDV 158

Query: 367 -----------------DSQKIFSEMSDRDLVTWTSMMIGYGA-HGHGKEAIELFDEMVK 408
                            D++ +F +M +R+LV+WT M+ GYG    HGK A ++F +M +
Sbjct: 159 SSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGK-AWDIFCKMHR 217

Query: 409 SGVRPDRIVFMAVLTACSHAG------------------------------------LVD 432
            G+ PD+  F + L+A    G                                    ++D
Sbjct: 218 EGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLD 277

Query: 433 EGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
             +K+F+SM    +  N+  +  ++  L   GR+  A  + +  P K
Sbjct: 278 TAIKFFESM----IERNEYTWSTMIAALSHGGRIDAAIAVYERDPVK 320



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 10/141 (7%)

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
           +A I    + G + +++++F  M  RD++ W SM+  Y  +G    A +L+D +    +R
Sbjct: 38  SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMR 97

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
              I    +L+     G V E  + F  M + N      +  C V    + G +  A  L
Sbjct: 98  TGAI----LLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYV----QNGDITMARRL 149

Query: 473 IKSMPFKPDESVWGPLL-GAC 492
             +MP + D S W  +L G C
Sbjct: 150 FDAMPSR-DVSSWNSMLTGYC 169


>gi|224121686|ref|XP_002318647.1| predicted protein [Populus trichocarpa]
 gi|222859320|gb|EEE96867.1| predicted protein [Populus trichocarpa]
          Length = 744

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 191/569 (33%), Positives = 312/569 (54%), Gaps = 11/569 (1%)

Query: 40  LIPKG---PSILATNLIKSYFDEGLIEEARTLFD-----EMPERDVVSWTVMIAGYTSFN 91
           L+ KG      L + LI+ Y   G I+ A  +F+     E+  R++  W VMI GY S  
Sbjct: 168 LVKKGVDSDEFLVSALIEMYMKCGDIKNAENVFERIRDNELVGRNMAVWNVMILGYVSNE 227

Query: 92  CHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVEN 151
           C + A  +FVEM+   ++P++ T+  VL  C  +  L+    +HG+ +  GL+  + V  
Sbjct: 228 CLSLALELFVEMLELGISPDSSTVVVVLVLCSQLLDLAVGKQIHGLILGLGLDDDVRVGT 287

Query: 152 SLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVE 211
           +LM++Y  C    + +  +F   +  N V W +++   A +G     L  F E +L+   
Sbjct: 288 ALMEMYFKCG-DPETSLQIFKRSQNHNLVMWGSVMLNCAQNGYPNEALEFFSEFMLDCGF 346

Query: 212 MNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQY 271
            +P     A+RAC+       G  IH   IK GF S++ V  +++D Y +   +  A Q 
Sbjct: 347 PDPVILLAALRACSFLSLKPRGMAIHGFAIKMGFDSDVFVGGALVDFYGKCGDMEYAQQV 406

Query: 272 FDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAAL 330
           F  ++ +DL++WN +I+G+ ++  + E L  F  M+S++  PN  T   I++ C  L+ +
Sbjct: 407 FYGLSTRDLVSWNALISGFAQNKCADEALKAFRDMQSKQIKPNTVTMACILSVCTHLSVM 466

Query: 331 SCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY 390
              ++VH  ++R   + N  + N+LI  YAKCG+I  S+ +F ++  R+ VTW S+++G+
Sbjct: 467 ILCKEVHCYLLRHWFETNALVNNSLISAYAKCGDIHSSRTVFEKLPVRNEVTWNSILLGF 526

Query: 391 GAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPN 449
           G HG   E    F++M ++ ++PD   F ++L++CSH+G VD G KYF SM  DYN+ P 
Sbjct: 527 GMHGRTDEMFATFEKMKEANIKPDHGTFTSLLSSCSHSGKVDAGWKYFNSMMEDYNLEPR 586

Query: 450 KEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVL 509
            E Y C+VDLLGRAG + +AY+LI SMP  PD+ +WG LL +CK H    L ++ A  + 
Sbjct: 587 VEQYTCMVDLLGRAGNLNQAYDLIMSMPCSPDDRIWGSLLASCKNHGNTKLAEVVANHIF 646

Query: 510 DLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIAND 569
           +L  + +G  ++L+N+Y   G   E  + R  ++ MG KK+ G SWIEV + +  F+A D
Sbjct: 647 ELDASSVGYRVLLANLYEDSGNLNEVFRVRTDIKQMGLKKQPGCSWIEVDNSIHIFVAGD 706

Query: 570 KMGSHTQYVYGVLEMLIRHMNETAYEPDI 598
                +  +Y  +E L   M    Y P I
Sbjct: 707 YSHDRSGDIYATIESLSLEMKRVGYVPHI 735



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/419 (27%), Positives = 214/419 (51%), Gaps = 18/419 (4%)

Query: 118 VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK 177
           ++KA  G+  ++    +HG  +K G    I+V+NSL+ +Y  C     NA  +F  M+ +
Sbjct: 45  LIKAFGGLYDVNKGKQIHGHLLKFGFLQDIFVKNSLLGMYWKCGAG-GNAVDMFERMEER 103

Query: 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLE--GVEMNPYSFSIAVRACASTGWVSFGKL 235
           + VSW T+I+G+  SG+    L +F+ M+ E  G   N  +   A+ +CAS   ++ G  
Sbjct: 104 DSVSWNTMISGFCQSGDYVKSLVMFRRMVKECGGSYHNRVACLAALSSCASIKCLTHGLE 163

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI-----TWNTIIAGY 290
           IH  ++K G  S+  +++++++MY +   + +A   F+ + + +L+      WN +I GY
Sbjct: 164 IHGFLVKKGVDSDEFLVSALIEMYMKCGDIKNAENVFERIRDNELVGRNMAVWNVMILGY 223

Query: 291 EKSGSSECLN----MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
               S+ECL+    +F +M     SP+  T   ++  C+ L  L+ G+Q+H  I+  GLD
Sbjct: 224 V---SNECLSLALELFVEMLELGISPDSSTVVVVLVLCSQLLDLAVGKQIHGLILGLGLD 280

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            ++ +  AL++MY KCG+   S +IF    + +LV W S+M+    +G+  EA+E F E 
Sbjct: 281 DDVRVGTALMEMYFKCGDPETSLQIFKRSQNHNLVMWGSVMLNCAQNGYPNEALEFFSEF 340

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
           +     PD ++ +A L ACS   L   G+           + +  + G +VD  G+ G +
Sbjct: 341 MLDCGFPDPVILLAALRACSFLSLKPRGMAIHGFAIKMGFDSDVFVGGALVDFYGKCGDM 400

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNMMGTYIILS 523
           + A ++   +  + D   W  L+    +++  +  L     ++   +KPN +    ILS
Sbjct: 401 EYAQQVFYGLSTR-DLVSWNALISGFAQNKCADEALKAFRDMQSKQIKPNTVTMACILS 458



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 112/503 (22%), Positives = 238/503 (47%), Gaps = 17/503 (3%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            +  +L+  Y+  G    A  +F+ M ERD VSW  MI+G+     + ++  +F  MV+ 
Sbjct: 75  FVKNSLLGMYWKCGAGGNAVDMFERMEERDSVSWNTMISGFCQSGDYVKSLVMFRRMVKE 134

Query: 107 --EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
                 N     + L +C  +K L++   +HG  +K+G++   ++ ++L+++Y  C   +
Sbjct: 135 CGGSYHNRVACLAALSSCASIKCLTHGLEIHGFLVKKGVDSDEFLVSALIEMYMKCG-DI 193

Query: 165 DNARLVF-----NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
            NA  VF     N++  +N   W  +I GY  +      L +F EML  G+  +  +  +
Sbjct: 194 KNAENVFERIRDNELVGRNMAVWNVMILGYVSNECLSLALELFVEMLELGISPDSSTVVV 253

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
            +  C+    ++ GK IH  ++  G   ++ V  ++++MY +      + Q F      +
Sbjct: 254 VLVLCSQLLDLAVGKQIHGLILGLGLDDDVRVGTALMEMYFKCGDPETSLQIFKRSQNHN 313

Query: 280 LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           L+ W +++    ++G  +E L  FS+   +   P+     + + AC+ L+    G  +H 
Sbjct: 314 LVMWGSVMLNCAQNGYPNEALEFFSEFMLDCGFPDPVILLAALRACSFLSLKPRGMAIHG 373

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
             ++ G D ++ +  AL+D Y KCG++  +Q++F  +S RDLV+W +++ G+  +    E
Sbjct: 374 FAIKMGFDSDVFVGGALVDFYGKCGDMEYAQQVFYGLSTRDLVSWNALISGFAQNKCADE 433

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVD 458
           A++ F +M    ++P+ +    +L+ C+H  ++    +    +  +    N  +   ++ 
Sbjct: 434 ALKAFRDMQSKQIKPNTVTMACILSVCTHLSVMILCKEVHCYLLRHWFETNALVNNSLIS 493

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNMM 516
              + G +  +  + + +P + +E  W  +L     H   +        ++  ++KP+  
Sbjct: 494 AYAKCGDIHSSRTVFEKLPVR-NEVTWNSILLGFGMHGRTDEMFATFEKMKEANIKPD-H 551

Query: 517 GTYIILSNIYAAEGK----WEEF 535
           GT+  L +  +  GK    W+ F
Sbjct: 552 GTFTSLLSSCSHSGKVDAGWKYF 574



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 164/332 (49%), Gaps = 30/332 (9%)

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
           F   ++A      V+ GK IH  ++K GF  ++ V NS+L MY +     +A   F+ M 
Sbjct: 42  FPCLIKAFGGLYDVNKGKQIHGHLLKFGFLQDIFVKNSLLGMYWKCGAGGNAVDMFERME 101

Query: 277 EKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSP--NCFTFTSIIAACATLAALSCG 333
           E+D ++WNT+I+G+ +SG   + L MF +M  E      N     + +++CA++  L+ G
Sbjct: 102 ERDSVSWNTMISGFCQSGDYVKSLVMFRRMVKECGGSYHNRVACLAALSSCASIKCLTHG 161

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLV-----TWTSMMI 388
            ++H  +V++G+D +  L +ALI+MY KCG+I +++ +F  + D +LV      W  M++
Sbjct: 162 LEIHGFLVKKGVDSDEFLVSALIEMYMKCGDIKNAENVFERIRDNELVGRNMAVWNVMIL 221

Query: 389 GYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP 448
           GY ++     A+ELF EM++ G+ PD    + VL  CS    +  G +    +    ++ 
Sbjct: 222 GYVSNECLSLALELFVEMLELGISPDSSTVVVVLVLCSQLLDLAVGKQIHGLILGLGLDD 281

Query: 449 NKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--------- 499
           +  +   ++++  + G  + + ++ K      +  +WG ++  C ++  PN         
Sbjct: 282 DVRVGTALMEMYFKCGDPETSLQIFKRSQ-NHNLVMWGSVMLNCAQNGYPNEALEFFSEF 340

Query: 500 ------------LGKLAALRVLDLKPNMMGTY 519
                       L  L A   L LKP  M  +
Sbjct: 341 MLDCGFPDPVILLAALRACSFLSLKPRGMAIH 372


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 205/607 (33%), Positives = 322/607 (53%), Gaps = 66/607 (10%)

Query: 47  ILATNLIKSY-FDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           ++ T ++  Y  D  +++ A   F+ M ER+  +W+ MIA  +     + A  V+     
Sbjct: 260 VIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVY----- 314

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMA----------IKEGLEGSIYVE-NSLM 154
            E +P    + S+  AC+        AL+ G+A          + E +   I V  N+L+
Sbjct: 315 -ERDP----VKSI--ACR-------TALITGLAQCGRIDDARILFEQIPEPIVVSWNALI 360

Query: 155 DVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP 214
             Y    + ++ A+ +F+ M ++N +SW  +I GYA +G     LG+ +E+   G+  + 
Sbjct: 361 TGYMQNGM-VNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSL 419

Query: 215 YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMY--CRF---------- 262
            S +    AC++   +  G  +H+  +K G   N    N+++ MY  CR           
Sbjct: 420 SSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSR 479

Query: 263 -------------------DCLSDANQYFDEMTEKDLITWNTIIAGYEKS-GSSECLNMF 302
                              D L +A   FD M  +D ++W TII+ Y  +  S+E +  F
Sbjct: 480 MVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAF 539

Query: 303 SKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362
             M  E   PN    T ++  C +L A   GQQ+H   ++ G+D  L +ANALI MY KC
Sbjct: 540 KTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKC 599

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
           G  +DS++IF  M +RD+ TW +++ GY  HG G+EAI+++  M  +GV P+ + F+ +L
Sbjct: 600 G-CADSRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLL 658

Query: 423 TACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481
            ACSHAGLVDEG K+FKSM+ DY + P  E Y C+VDLLGR G V+ A + I  MP +PD
Sbjct: 659 NACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPD 718

Query: 482 ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKI 541
             +W  LLGACK H+   +GK AA ++  ++P+  G Y++LSNIY++ G W E A+ RKI
Sbjct: 719 TVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKI 778

Query: 542 MRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCL 601
           M+  G  KE G SW +++DK+  F+  DK     + +   LE L   +  T Y PD + +
Sbjct: 779 MKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYVPDTEFV 838

Query: 602 IHDLEGE 608
           +HD++ E
Sbjct: 839 LHDIDEE 845



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 124/406 (30%), Positives = 211/406 (51%), Gaps = 15/406 (3%)

Query: 64  EARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACK 123
           +AR LF++MPER++VSWTVMI+GY     H +AW +F +M R  + P+    +S L A K
Sbjct: 176 DARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVK 235

Query: 124 GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWT 183
           G+ +L     +  +A+K G E  + +  ++++VY+     +D A   F  M  +N+ +W+
Sbjct: 236 GLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWS 295

Query: 184 TLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH 243
           T+I   +H G     + V+        E +P   SIA R    TG    G++  A ++  
Sbjct: 296 TMIAALSHGGRIDAAIAVY--------ERDPVK-SIACRTALITGLAQCGRIDDARILFE 346

Query: 244 GFGSNLPV-MNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNM 301
                + V  N+++  Y +   +++A + FD+M  ++ I+W  +IAGY ++G S E L +
Sbjct: 347 QIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGL 406

Query: 302 FSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK 361
             ++      P+  + TSI  AC+ + AL  G QVH+  V+ G   N    NALI MY K
Sbjct: 407 LQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGK 466

Query: 362 CGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAV 421
           C N+  ++++FS M  +D+V+W S +     +    EA   FD M+      D + +  +
Sbjct: 467 CRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSR----DDVSWTTI 522

Query: 422 LTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
           ++A +HA   +E +  FK+M   +  PN  I   ++ + G  G  K
Sbjct: 523 ISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASK 568



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 121/409 (29%), Positives = 199/409 (48%), Gaps = 61/409 (14%)

Query: 41  IPKGPSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTV 99
           IP+ P +++ N LI  Y   G++ EA+ LFD+MP R+ +SW  MIAGY       +A  +
Sbjct: 348 IPE-PIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGL 406

Query: 100 FVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
             E+ R+ + P+  +L+S+  AC  + +L     VH +A+K G + + +  N+L+ +Y  
Sbjct: 407 LQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGK 466

Query: 160 C-----------------CIS-------------MDNARLVFNDMKWKNDVSWTTLITGY 189
           C                  +S             +D AR  F++M  ++DVSWTT+I+ Y
Sbjct: 467 CRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAY 526

Query: 190 AHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNL 249
           AH+      +G FK M  E    N    +I +  C S G    G+ IH   IK G  S L
Sbjct: 527 AHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSEL 586

Query: 250 PVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSE 308
            V N+++ MY +  C +D+ + FD M E+D+ TWNTII GY + G   E + M+  M+S 
Sbjct: 587 IVANALISMYFKCGC-ADSRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESA 645

Query: 309 RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN------------ALI 356
              PN  TF  ++ AC+           HAG+V  G     +++              ++
Sbjct: 646 GVLPNEVTFVGLLNACS-----------HAGLVDEGWKFFKSMSQDYGLTPLPEHYACMV 694

Query: 357 DMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGH---GKEAIE 401
           D+  + G++  +++   +M  + D V W++++     H +   GK A E
Sbjct: 695 DLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAE 743



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 115/467 (24%), Positives = 207/467 (44%), Gaps = 43/467 (9%)

Query: 60  GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHN----QAWTVFVEMVRNEVNPNAFTL 115
           G + EAR +FD MP RD+++W  MI+ Y    CHN     A  ++  +    +   A  L
Sbjct: 48  GRVGEAREVFDAMPRRDIIAWNSMISAY----CHNGMPDAARDLYDAISGGNMRTGAILL 103

Query: 116 SS------VLKACKGMKSL--SNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS---- 163
           S       VL+A +    +   N    + M       G I +   L D   +  +S    
Sbjct: 104 SGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNS 163

Query: 164 ----------MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMN 213
                     M +AR +F  M  +N VSWT +I+GY    N      +F +M  EG+  +
Sbjct: 164 MLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPD 223

Query: 214 PYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR-FDCLSDANQYF 272
             +F+ A+ A    G +   + +    +K GF  ++ +  +IL++Y R    L  A ++F
Sbjct: 224 QSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFF 283

Query: 273 DEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALS- 331
           + M E++  TW+T+IA     G  +     + +      P      SI    A +  L+ 
Sbjct: 284 ESMIERNEYTWSTMIAALSHGGRID-----AAIAVYERDP----VKSIACRTALITGLAQ 334

Query: 332 CGQQVHAGIVRRGLDGNLALA-NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY 390
           CG+   A I+   +   + ++ NALI  Y + G +++++++F +M  R+ ++W  M+ GY
Sbjct: 335 CGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGY 394

Query: 391 GAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK 450
             +G  +EA+ L  E+ +SG+ P      ++  ACS+   ++ G +            N 
Sbjct: 395 AQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNS 454

Query: 451 EIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
                ++ + G+   ++ A ++   M  K D   W   L A  ++ L
Sbjct: 455 FACNALITMYGKCRNMEYARQVFSRMVTK-DIVSWNSFLAALVQNDL 500



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 114/287 (39%), Gaps = 80/287 (27%)

Query: 261 RFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSI 320
           R   + +A + FD M  +D+I WN++I+ Y  +G  +         S     N  T   +
Sbjct: 46  RLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAIS---GGNMRTGAIL 102

Query: 321 IAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNIS-------------- 366
           ++    L  +   ++V  G++ R    N    NA+I  Y + G+I+              
Sbjct: 103 LSGYGRLGRVLEARRVFDGMLER----NTVAWNAMISCYVQNGDITMARRLFDAMPSRDV 158

Query: 367 -----------------DSQKIFSEMSDRDLVTWTSMMIGYGA-HGHGKEAIELFDEMVK 408
                            D++ +F +M +R+LV+WT M+ GYG    HGK A ++F +M +
Sbjct: 159 SSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGK-AWDIFCKMHR 217

Query: 409 SGVRPDRIVFMAVLTACSHAG------------------------------------LVD 432
            G+ PD+  F + L+A    G                                    ++D
Sbjct: 218 EGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLD 277

Query: 433 EGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
             +K+F+SM    +  N+  +  ++  L   GR+  A  + +  P K
Sbjct: 278 TAIKFFESM----IERNEYTWSTMIAALSHGGRIDAAIAVYERDPVK 320



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 10/141 (7%)

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
           +A I    + G + +++++F  M  RD++ W SM+  Y  +G    A +L+D +    +R
Sbjct: 38  SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMR 97

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
              I    +L+     G V E  + F  M + N      +  C V    + G +  A  L
Sbjct: 98  TGAI----LLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYV----QNGDITMARRL 149

Query: 473 IKSMPFKPDESVWGPLL-GAC 492
             +MP + D S W  +L G C
Sbjct: 150 FDAMPSR-DVSSWNSMLTGYC 169


>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Vitis vinifera]
          Length = 541

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 183/526 (34%), Positives = 294/526 (55%), Gaps = 43/526 (8%)

Query: 118 VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK 177
           +LK C  +  L     +H   +K  L  S ++   ++DV        + A L+F  +   
Sbjct: 20  ILKNCPNIVELKK---IHAHIVKFSLSQSSFLVTKMVDV-CNHHAETEYANLLFKRVADP 75

Query: 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP-----YSFSIAVRACASTGWVSF 232
           N   +  +I  Y H+      + V+K+ML      NP     ++F   V++CA       
Sbjct: 76  NAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLMCYDL 135

Query: 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEK 292
           GK +H  V K G  SN  V NS+++MY + D L DA++ F+EMTE+D ++WNT+I+G+ +
Sbjct: 136 GKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVR 195

Query: 293 SGS--------------------------------SECLNMFSKMKSERFSPNCFTFTSI 320
            G                                 ++ L  F +M+     P+  +  S+
Sbjct: 196 LGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSV 255

Query: 321 IAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDL 380
           + ACA L AL  G+ +H    + G   N+ + NALI+MYAKCG+I + +++F +M++RD+
Sbjct: 256 LPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDV 315

Query: 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS 440
           ++W++M++G   HG   EAIELF EM K+ + P+ I F+ +L+AC+HAGL++EGL+YF+S
Sbjct: 316 ISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGLRYFES 375

Query: 441 M-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN 499
           M  DYN+ P  E YGC+V+LLG +GR+ +A ELIK MP KPD ++WG LL +C+ H    
Sbjct: 376 MKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLLSSCRSHSNLE 435

Query: 500 LGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVR 559
           +  +A   +L+L+P   G Y++LSN+YA  GKW+  ++ RK+MR    KK  G S IEV 
Sbjct: 436 IAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVD 495

Query: 560 DKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDL 605
           + V  F + D     ++ +Y VL++L+ H      +  I+ ++HD+
Sbjct: 496 NMVQEFASGDDSKPFSKAIYRVLKLLVMHQRRMD-DDIIEIMVHDI 540



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 104/394 (26%), Positives = 184/394 (46%), Gaps = 40/394 (10%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV- 104
           S L T ++         E A  LF  + + +   +  MI  Y     +  A TV+ +M+ 
Sbjct: 46  SFLVTKMVDVCNHHAETEYANLLFKRVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLG 105

Query: 105 ----RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
                N + P+ FT   V+K+C G+        VHG   K G + +  VENSL+++Y   
Sbjct: 106 HSHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVK- 164

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSG------------------------NGY 196
           C S+D+A  VF +M  ++ VSW TLI+G+   G                        +GY
Sbjct: 165 CDSLDDAHKVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGY 224

Query: 197 GGLG-------VFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNL 249
             +G        F+ M + G+E +  S    + ACA  G +  GK IH    K GF  N+
Sbjct: 225 ARIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNI 284

Query: 250 PVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSE 308
            V N++++MY +   + +  + FD+M E+D+I+W+T+I G    G + E + +F +M+  
Sbjct: 285 CVCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKA 344

Query: 309 RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-GLDGNLALANALIDMYAKCGNISD 367
           +  PN  TF  +++ACA    L+ G +    + R   ++  +     L+++    G +  
Sbjct: 345 KIEPNIITFVGLLSACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQ 404

Query: 368 SQKIFSEMSDR-DLVTWTSMMIGYGAHGHGKEAI 400
           + ++  +M  + D   W S++    +H + + A+
Sbjct: 405 ALELIKKMPMKPDSAIWGSLLSSCRSHSNLEIAV 438



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 106/222 (47%), Gaps = 32/222 (14%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVV------------------------ 78
           K  +++  +L++ Y     +++A  +F+EM ERD V                        
Sbjct: 149 KSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEE 208

Query: 79  -------SWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNA 131
                  SWT +++GY    C+  A   F  M    + P+  +L SVL AC  + +L   
Sbjct: 209 MQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELG 268

Query: 132 ALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAH 191
             +H  A K G   +I V N+L+++YA C  S+D  R +F+ M  ++ +SW+T+I G A+
Sbjct: 269 KWIHFYADKAGFLRNICVCNALIEMYAKCG-SIDEGRRLFDQMNERDVISWSTMIVGLAN 327

Query: 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG 233
            G  +  + +F+EM    +E N  +F   + ACA  G ++ G
Sbjct: 328 HGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEG 369


>gi|92429671|gb|ABE77204.1| unknown [Sorghum bicolor]
          Length = 795

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 184/546 (33%), Positives = 311/546 (56%), Gaps = 4/546 (0%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN-E 107
           A +L+  Y   GL+ +A  +FD MP RD+VSW  M+ GY S      A   F EM    +
Sbjct: 158 ANSLVALYAKLGLVGDAERVFDGMPARDIVSWNTMVDGYVSNGMGALALACFREMNDALQ 217

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V  ++  + + L AC    +L+    +HG AI+ GLE  + V  SL+D+Y  C  ++  A
Sbjct: 218 VGHDSVGVIAALAACCLESALALGREIHGYAIRHGLEQDVKVGTSLVDMYCKCG-NVFFA 276

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             VF  M  +  V+W  +I GYA +         F +M ++G ++   +    + ACA T
Sbjct: 277 ENVFAKMPLRTVVTWNCMIGGYALNERPVDAFDCFMQMRVDGFQVEVVTAINLLTACAQT 336

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
               FG+ +HA V++  F  ++ +  ++L+MY +   +  + + F ++T+K L++WN +I
Sbjct: 337 ESSLFGRSVHAYVVRRHFLPHVVLETALLEMYGKVGKVESSEKIFGQITDKTLVSWNNMI 396

Query: 288 AGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           A Y       E + +F ++ ++   P+ FT T+++ A   L ++   +Q+H+ IV+ G  
Sbjct: 397 AAYMYMEMYQEAIALFLELLNQPLYPDYFTMTTVVPAFVLLGSIRQCKQMHSYIVKLGYG 456

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            +  + NA++ MYA+CGNI  S++IF +M  +D+++W +++IGY  HG GK A+E+FDEM
Sbjct: 457 DSTLIMNAVMHMYARCGNIVASREIFDKMPGKDVISWNTIIIGYAIHGQGKIALEMFDEM 516

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGR 465
             SG+ P+   F++VLTACS +GL  EG K F SM  +Y + P  E YGC+ DLLGRAG 
Sbjct: 517 KCSGMEPNESTFVSVLTACSVSGLEAEGWKEFNSMQQEYGMIPQIEHYGCMTDLLGRAGE 576

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           ++E    I++MP  P   +WG LL A +     ++ + AA R+  L+ N  G Y++LS++
Sbjct: 577 LREVLRFIENMPIAPTSRIWGSLLTASRNKNDIDIAEYAAERIFQLEHNNTGCYVVLSSM 636

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           YA  G+WE+  + R +M+  G ++    S +E+ +K C F+  D     ++ ++   ++L
Sbjct: 637 YADAGRWEDVERIRSLMKEKGLRRTEARSLVELNNKECSFVNGDMSHPQSEKIHEFSDIL 696

Query: 586 IRHMNE 591
            R++ E
Sbjct: 697 SRNIGE 702



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 145/507 (28%), Positives = 237/507 (46%), Gaps = 29/507 (5%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
           +LI S+   G ++EA   F  +         VMI G+   +    A   +  M+     P
Sbjct: 59  SLILSHVAAGRMDEAADAFAGVTRPGAFLHNVMIRGFADADLPLDALAAYRAMLDAGARP 118

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           + FT   VLK C    +L      H   IK GL   +Y  NSL+ +YA   +  D  R V
Sbjct: 119 DRFTFPVVLKCCARAGALGEGRAAHAAVIKLGLGADVYTANSLVALYAKLGLVGDAER-V 177

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI--AVRACASTG 228
           F+ M  ++ VSW T++ GY  +G G   L  F+EM  + +++   S  +  A+ AC    
Sbjct: 178 FDGMPARDIVSWNTMVDGYVSNGMGALALACFREM-NDALQVGHDSVGVIAALAACCLES 236

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            ++ G+ IH   I+HG   ++ V  S++DMYC+   +  A   F +M  + ++TWN +I 
Sbjct: 237 ALALGREIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIG 296

Query: 289 GYE-KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           GY       +  + F +M+ + F     T  +++ ACA   +   G+ VHA +VRR    
Sbjct: 297 GYALNERPVDAFDCFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVVRRHFLP 356

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           ++ L  AL++MY K G +  S+KIF +++D+ LV+W +M+  Y      +EAI LF E++
Sbjct: 357 HVVLETALLEMYGKVGKVESSEKIFGQITDKTLVSWNNMIAAYMYMEMYQEAIALFLELL 416

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN----PNKEIYGCVVDLLGRA 463
              + PD      V+ A    G     ++  K M+ Y V      +  I   V+ +  R 
Sbjct: 417 NQPLYPDYFTMTTVVPAFVLLG----SIRQCKQMHSYIVKLGYGDSTLIMNAVMHMYARC 472

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD------LKPNMMG 517
           G +  + E+   MP K D   W  ++     H     GK+ AL + D      ++PN   
Sbjct: 473 GNIVASREIFDKMPGK-DVISWNTIIIGYAIH---GQGKI-ALEMFDEMKCSGMEPNEST 527

Query: 518 TYIILSNI----YAAEGKWEEFAKFRK 540
              +L+        AEG W+EF   ++
Sbjct: 528 FVSVLTACSVSGLEAEG-WKEFNSMQQ 553



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 139/280 (49%), Gaps = 2/280 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + T+L+  Y   G +  A  +F +MP R VV+W  MI GY        A+  F++M  + 
Sbjct: 259 VGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIGGYALNERPVDAFDCFMQMRVDG 318

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
                 T  ++L AC   +S      VH   ++      + +E +L+++Y      ++++
Sbjct: 319 FQVEVVTAINLLTACAQTESSLFGRSVHAYVVRRHFLPHVVLETALLEMYGKVG-KVESS 377

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             +F  +  K  VSW  +I  Y +       + +F E+L + +  + ++ +  V A    
Sbjct: 378 EKIFGQITDKTLVSWNNMIAAYMYMEMYQEAIALFLELLNQPLYPDYFTMTTVVPAFVLL 437

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
           G +   K +H+ ++K G+G +  +MN+++ MY R   +  + + FD+M  KD+I+WNTII
Sbjct: 438 GSIRQCKQMHSYIVKLGYGDSTLIMNAVMHMYARCGNIVASREIFDKMPGKDVISWNTII 497

Query: 288 AGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACAT 326
            GY   G  +  L MF +MK     PN  TF S++ AC+ 
Sbjct: 498 IGYAIHGQGKIALEMFDEMKCSGMEPNESTFVSVLTACSV 537



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 104/194 (53%), Gaps = 6/194 (3%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +L T L++ Y   G +E +  +F ++ ++ +VSW  MIA Y     + +A  +F+E++  
Sbjct: 359 VLETALLEMYGKVGKVESSEKIFGQITDKTLVSWNNMIAAYMYMEMYQEAIALFLELLNQ 418

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + P+ FT+++V+ A   + S+     +H   +K G   S  + N++M +YA C  ++  
Sbjct: 419 PLYPDYFTMTTVVPAFVLLGSIRQCKQMHSYIVKLGYGDSTLIMNAVMHMYARCG-NIVA 477

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA- 225
           +R +F+ M  K+ +SW T+I GYA  G G   L +F EM   G+E N  +F   + AC+ 
Sbjct: 478 SREIFDKMPGKDVISWNTIIIGYAIHGQGKIALEMFDEMKCSGMEPNESTFVSVLTACSV 537

Query: 226 ----STGWVSFGKL 235
               + GW  F  +
Sbjct: 538 SGLEAEGWKEFNSM 551



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 44  GPSILATNLIKSYFDE-GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           G S L  N +   +   G I  +R +FD+MP +DV+SW  +I GY        A  +F E
Sbjct: 456 GDSTLIMNAVMHMYARCGNIVASREIFDKMPGKDVISWNTIIIGYAIHGQGKIALEMFDE 515

Query: 103 MVRNEVNPNAFTLSSVLKAC 122
           M  + + PN  T  SVL AC
Sbjct: 516 MKCSGMEPNESTFVSVLTAC 535



 Score = 45.8 bits (107), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 30/141 (21%), Positives = 59/141 (41%)

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
           G   R +  + +   +LI  +   G + ++   F+ ++         M+ G+       +
Sbjct: 44  GGASRPISSSGSRPKSLILSHVAAGRMDEAADAFAGVTRPGAFLHNVMIRGFADADLPLD 103

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVD 458
           A+  +  M+ +G RPDR  F  VL  C+ AG + EG     ++    +  +      +V 
Sbjct: 104 ALAAYRAMLDAGARPDRFTFPVVLKCCARAGALGEGRAAHAAVIKLGLGADVYTANSLVA 163

Query: 459 LLGRAGRVKEAYELIKSMPFK 479
           L  + G V +A  +   MP +
Sbjct: 164 LYAKLGLVGDAERVFDGMPAR 184


>gi|15233292|ref|NP_188854.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273371|sp|Q9LIE7.1|PP246_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22150, chloroplastic; Flags: Precursor
 gi|11994734|dbj|BAB03063.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|110739449|dbj|BAF01634.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643073|gb|AEE76594.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 820

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 197/568 (34%), Positives = 322/568 (56%), Gaps = 12/568 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV-RN 106
           + ++ I  Y + G IE +R +FD   ER++  W  MI  Y   +C  ++  +F+E +   
Sbjct: 253 VVSSAISMYAELGDIESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIGSK 312

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           E+  +  T      A   ++ +      HG   K   E  I + NSLM +Y+ C  S+  
Sbjct: 313 EIVSDEVTYLLAASAVSALQQVELGRQFHGFVSKNFRELPIVIVNSLMVMYSRCG-SVHK 371

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           +  VF  M+ ++ VSW T+I+ +  +G    GL +  EM  +G +++  + +  + A ++
Sbjct: 372 SFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASN 431

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNS-ILDMYCRFDCLSDANQYFDE--MTEKDLITW 283
                 GK  HA +I+ G       MNS ++DMY +   +  + + F+     E+D  TW
Sbjct: 432 LRNKEIGKQTHAFLIRQGI--QFEGMNSYLIDMYSKSGLIRISQKLFEGSGYAERDQATW 489

Query: 284 NTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N++I+GY ++G +E    +F KM  +   PN  T  SI+ AC+ + ++  G+Q+H   +R
Sbjct: 490 NSMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQIGSVDLGKQLHGFSIR 549

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
           + LD N+ +A+AL+DMY+K G I  ++ +FS+  +R+ VT+T+M++GYG HG G+ AI L
Sbjct: 550 QYLDQNVFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQHGMGERAISL 609

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLG 461
           F  M +SG++PD I F+AVL+ACS++GL+DEGLK F+ M + YN+ P+ E Y C+ D+LG
Sbjct: 610 FLSMQESGIKPDAITFVAVLSACSYSGLIDEGLKIFEEMREVYNIQPSSEHYCCITDMLG 669

Query: 462 RAGRVKEAYELIKSMPFKPD-ESVWGPLLGACKEHRLPNLGKLAALRV--LDLKPNMMGT 518
           R GRV EAYE +K +  + +   +WG LLG+CK H    L +  + R+   D   N  G 
Sbjct: 670 RVGRVNEAYEFVKGLGEEGNIAELWGSLLGSCKLHGELELAETVSERLAKFDKGKNFSGY 729

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
            ++LSN+YA E KW+   K R+ MR  G KKEVG S IE+   V  F++ D+   H+  +
Sbjct: 730 EVLLSNMYAEEQKWKSVDKVRRGMREKGLKKEVGRSGIEIAGYVNCFVSRDQEHPHSSEI 789

Query: 579 YGVLEMLIRHMNETAYEPDIDCLIHDLE 606
           Y V++ L + M   ++   +  +   LE
Sbjct: 790 YDVIDGLAKDMRGDSFLTTLPTVTPSLE 817



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 137/518 (26%), Positives = 250/518 (48%), Gaps = 39/518 (7%)

Query: 30  KKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTS 89
           + SS  S P L P+ PSI +   +     +G  + AR LFD +P+   V W  +I G+  
Sbjct: 25  RHSSTFSPPTLTPQTPSIRSR--LSKICQDGNPQLARQLFDAIPKPTTVLWNTIIIGFIC 82

Query: 90  FNCHNQAWTVFVEMVRNE--VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSI 147
            N  ++A   +  M +     N +A+T SS LKAC   K+L     VH   I+     S 
Sbjct: 83  NNLPHEALLFYSRMKKTAPFTNCDAYTYSSTLKACAETKNLKAGKAVHCHLIRCLQNSSR 142

Query: 148 YVENSLMDVYATC-----CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVF 202
            V NSLM++Y +C     C   D  R VF++M+ KN V+W TLI+ Y  +G        F
Sbjct: 143 VVHNSLMNMYVSCLNAPDCFEYDVVRKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQF 202

Query: 203 KEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG--FGSNLPVMNSILDMYC 260
             M+   V+ +P SF     A + +  +    + +  ++K G  +  +L V++S + MY 
Sbjct: 203 GIMMRMEVKPSPVSFVNVFPAVSISRSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYA 262

Query: 261 RFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMF-SKMKSERFSPNCFTFT 318
               +  + + FD   E+++  WNT+I  Y ++    E + +F   + S+    +  T+ 
Sbjct: 263 ELGDIESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTYL 322

Query: 319 SIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR 378
              +A + L  +  G+Q H  + +   +  + + N+L+ MY++CG++  S  +F  M +R
Sbjct: 323 LAASAVSALQQVELGRQFHGFVSKNFRELPIVIVNSLMVMYSRCGSVHKSFGVFLSMRER 382

Query: 379 DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS-----------H 427
           D+V+W +M+  +  +G   E + L  EM K G + D I   A+L+A S           H
Sbjct: 383 DVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTH 442

Query: 428 AGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPF-KPDESVWG 486
           A L+ +G++ F+ MN Y           ++D+  ++G ++ + +L +   + + D++ W 
Sbjct: 443 AFLIRQGIQ-FEGMNSY-----------LIDMYSKSGLIRISQKLFEGSGYAERDQATWN 490

Query: 487 PLLGACKEHRLPNLGKLAALRVLD--LKPNMMGTYIIL 522
            ++    ++       L   ++L+  ++PN +    IL
Sbjct: 491 SMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASIL 528



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/414 (28%), Positives = 222/414 (53%), Gaps = 10/414 (2%)

Query: 66  RTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGM 125
           R +FD M  ++VV+W  +I+ Y     + +A   F  M+R EV P+  +  +V  A    
Sbjct: 168 RKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAVSIS 227

Query: 126 KSLSNAALVHGMAIKEGLE--GSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWT 183
           +S+  A + +G+ +K G E    ++V +S + +YA     ++++R VF+    +N   W 
Sbjct: 228 RSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELG-DIESSRRVFDSCVERNIEVWN 286

Query: 184 TLITGYAHSGNGYGGLGVFKEML-LEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIK 242
           T+I  Y  +      + +F E +  + +  +  ++ +A  A ++   V  G+  H  V K
Sbjct: 287 TMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTYLLAASAVSALQQVELGRQFHGFVSK 346

Query: 243 HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNM 301
           +     + ++NS++ MY R   +  +   F  M E+D+++WNT+I+ + ++G   E L +
Sbjct: 347 NFRELPIVIVNSLMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLML 406

Query: 302 FSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK 361
             +M+ + F  +  T T++++A + L     G+Q HA ++R+G+     + + LIDMY+K
Sbjct: 407 VYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHAFLIRQGIQFE-GMNSYLIDMYSK 465

Query: 362 CGNISDSQKIF--SEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFM 419
            G I  SQK+F  S  ++RD  TW SM+ GY  +GH ++   +F +M++  +RP+ +   
Sbjct: 466 SGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVA 525

Query: 420 AVLTACSHAGLVDEGLKYFK-SMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
           ++L ACS  G VD G +    S+  Y ++ N  +   +VD+  +AG +K A ++
Sbjct: 526 SILPACSQIGSVDLGKQLHGFSIRQY-LDQNVFVASALVDMYSKAGAIKYAEDM 578


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 183/507 (36%), Positives = 292/507 (57%), Gaps = 5/507 (0%)

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           E+ P      S + AC   K+L +A  +H         G  +++NSL+ +Y  C   +D 
Sbjct: 46  ELAPTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLD- 104

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR VF+ M+ K+ VSWT+LI GYA +      +G+   ML    + N ++F+  ++A  +
Sbjct: 105 ARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGA 164

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
                 G+ IHA  +K G+  ++ V +++LDMY R   +  A   FD++  K+ ++WN +
Sbjct: 165 YADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNAL 224

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+G+ + G  E  L  F++M    F    FT++S+ ++ A L AL  G+ VHA +++   
Sbjct: 225 ISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQ 284

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
                + N L+DMYAK G++ D++K+F  + ++DLVTW SM+  +  +G GKEA+  F+E
Sbjct: 285 KLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEE 344

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M KSGV  ++I F+ +LTACSH GLV EG +YF+ M +Y++ P  + Y  VV LLGRAG 
Sbjct: 345 MRKSGVYLNQITFLCILTACSHGGLVKEGKRYFEMMKEYDLEPEIDHYVTVVALLGRAGL 404

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           +  A   I  MP +P  +VWG LL AC+ H+   +G+ AA  V +L P+  G  ++L NI
Sbjct: 405 LNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNI 464

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           YA+ G+W+  A+ R +M+  G KKE   SW+E+ + V  F+AND      + +Y +   +
Sbjct: 465 YASTGQWDAAARVRMMMKTTGVKKEPACSWVEMENSVHMFVANDDTHPQAEEIYKMWGEI 524

Query: 586 IRHMNETAYEPDID-CLIH--DLEGET 609
            + + +  Y PD+D  L+H  D E E 
Sbjct: 525 SKKIRKEGYVPDMDYVLLHVDDQEKEA 551



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 103/302 (34%), Positives = 158/302 (52%), Gaps = 13/302 (4%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G + L  +LI  Y     + +AR +FD+M  +D+VSWT +IAGY   +   +A  +   M
Sbjct: 84  GDAFLDNSLIHMYCKCRSVLDARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGM 143

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           ++    PN FT +S+LKA            +H +A+K G    +YV ++L+D+YA C   
Sbjct: 144 LKGRFKPNGFTFASLLKAAGAYADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCG-K 202

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           MD A  VF+ +  KN VSW  LI+G+A  G+G   L  F EML  G E   +++S    +
Sbjct: 203 MDMATAVFDKLDSKNGVSWNALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSS 262

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
            A  G +  GK +HA VIK        V N++LDMY +   + DA + FD +  KDL+TW
Sbjct: 263 IARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTW 322

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N+++  + + G   E ++ F +M+      N  TF  I+ AC+           H G+V+
Sbjct: 323 NSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACS-----------HGGLVK 371

Query: 343 RG 344
            G
Sbjct: 372 EG 373


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 178/521 (34%), Positives = 306/521 (58%), Gaps = 13/521 (2%)

Query: 98  TVFVEMVRNEVNPNAFT----------LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSI 147
           +VF    + E++P  ++             +L+ C    ++  A   HG  ++  L+G +
Sbjct: 39  SVFASYEQEELSPGRYSDEFNVVQASDFIEILQLCARNGAVMEAKACHGKTMRMELQGDV 98

Query: 148 YVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLL 207
            + N L++ Y+ C   ++ AR VF+ M  ++ VSW T+I  Y  +      L +F EM  
Sbjct: 99  TLSNVLINAYSKCGF-VELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFWEMRN 157

Query: 208 EGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSD 267
           EG + + ++ S  + AC +       K +H   +K     NL V  ++LD+Y +   ++D
Sbjct: 158 EGFKFSEFTISSVLSACGANCDALECKKLHCLSMKTSLDLNLYVGTALLDLYAKCGMIND 217

Query: 268 ANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACAT 326
           A Q F+ M +K  +TW++++AGY +S +  E L ++ + +      N FT +S+I AC+ 
Sbjct: 218 AVQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSN 277

Query: 327 LAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSM 386
           LAAL  G+Q+HA I + G   N+ +A++ +DMYAKCG++ +S  IFSE+ ++++  W ++
Sbjct: 278 LAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTI 337

Query: 387 MIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYN 445
           + G+  H   KE + LF++M + G+ P+ + F ++L+ C H GLV+EG ++FK M   Y 
Sbjct: 338 ISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYG 397

Query: 446 VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAA 505
           ++PN   Y C+VD+LGRAG + EAYELIKS+PF+P  S+WG LL +C+  +   L ++AA
Sbjct: 398 LSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFEPTASIWGSLLASCRVCKNLELAEVAA 457

Query: 506 LRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGF 565
            ++ +L+P   G +++LSNIYAA  +WEE AK RK++R    KK  G SWI+++DKV  F
Sbjct: 458 KKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGQSWIDIKDKVHIF 517

Query: 566 IANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
              +      + +  +L+ L+  + +  Y+P ++  +HD+E
Sbjct: 518 RVGESSHPRIREICTMLDNLVIELRKFGYKPSVEHELHDVE 558



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 182/331 (54%), Gaps = 3/331 (0%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           +G   L+  LI +Y   G +E AR +FD M ER +VSW  MI  YT     ++A  +F E
Sbjct: 95  QGDVTLSNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFWE 154

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M       + FT+SSVL AC           +H +++K  L+ ++YV  +L+D+YA C +
Sbjct: 155 MRNEGFKFSEFTISSVLSACGANCDALECKKLHCLSMKTSLDLNLYVGTALLDLYAKCGM 214

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            +++A  VF  M+ K+ V+W++++ GY  S N    L +++      +E N ++ S  + 
Sbjct: 215 -INDAVQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVIC 273

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           AC++   +  GK +HA + K GFGSN+ V +S +DMY +   L ++   F E+ EK++  
Sbjct: 274 ACSNLAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIEL 333

Query: 283 WNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI- 340
           WNTII+G+ K     E + +F KM+ +   PN  TF+S+++ C     +  G++    + 
Sbjct: 334 WNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMR 393

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKI 371
              GL  N+   + ++D+  + G +S++ ++
Sbjct: 394 TTYGLSPNVVHYSCMVDILGRAGLLSEAYEL 424


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 188/563 (33%), Positives = 318/563 (56%), Gaps = 5/563 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A +L+  Y   G+++ A  +F +MP +DV SW  MI+G+        A  V   M    
Sbjct: 158 VAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEG 217

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V  +  T++S+L  C     + N  L+H   +K GL+  ++V N+L+++Y+     + +A
Sbjct: 218 VKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFG-RLQDA 276

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           ++VF+ M+ ++ VSW ++I  Y  + +    L  FK M L G+  +  +        +  
Sbjct: 277 QMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQL 336

Query: 228 GWVSFGKLIHAAVIKHG-FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
                 + I   VI+      ++ + N++++MY +   ++ A+  FD++  KD I+WNT+
Sbjct: 337 SDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTL 396

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFS-PNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           + GY ++G +SE ++ ++ M+  R + PN  T+ SII A + + AL  G ++HA +++  
Sbjct: 397 VTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNS 456

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           L  ++ +A  LID+Y KCG + D+  +F E+     V W +++   G HG G+EA++LF 
Sbjct: 457 LYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFK 516

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRA 463
           +M+   V+ D I F+++L+ACSH+GLVDEG K F  M  +Y + P+ + YGC+VDLLGRA
Sbjct: 517 DMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRA 576

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G +++AYEL+++MP +PD S+WG LL ACK +    LG LA+ R+L++    +G Y++LS
Sbjct: 577 GYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLS 636

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           NIYA   KWE   K R + R  G +K  G S + V  K   F   ++       +Y  L+
Sbjct: 637 NIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELK 696

Query: 584 MLIRHMNETAYEPDIDCLIHDLE 606
           +L   M    Y PD   +  D+E
Sbjct: 697 VLSAKMKSLGYVPDYSFVYQDIE 719



 Score =  241 bits (616), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 142/460 (30%), Positives = 249/460 (54%), Gaps = 20/460 (4%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSF-------NCHNQAWTV 99
           +L+T LI  Y   G I  +R+ FD + ++++ SW  +I+ Y  F       NC NQ   +
Sbjct: 55  VLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQ---L 111

Query: 100 FVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
           F       + P+ +T   +LKAC    SL +   VH    K G E  ++V  SL+ +Y+ 
Sbjct: 112 FSMCGGGHLRPDFYTFPPILKAC---VSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSR 168

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
             + +D A  VF DM  K+  SW  +I+G+  +GN  G LGV   M  EGV+M+  + + 
Sbjct: 169 YGV-LDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVAS 227

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
            +  CA +  V  G LIH  V+KHG  S++ V N++++MY +F  L DA   FD+M  +D
Sbjct: 228 ILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRD 287

Query: 280 LITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           L++WN+IIA YE++   S  L  F  M+     P+  T  S+ +  + L+     + +  
Sbjct: 288 LVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILG 347

Query: 339 GIVRRG-LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
            ++RR  LD ++ + NAL++MYAK G ++ +  +F ++  +D ++W +++ GY  +G   
Sbjct: 348 FVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLAS 407

Query: 398 EAIELFDEMVK-SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCV 456
           EAI+ ++ M +     P++  +++++ A SH G + +G+K    +   ++  +  +  C+
Sbjct: 408 EAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCL 467

Query: 457 VDLLGRAGRVKEAYELIKSMPFKPDESV-WGPLLGACKEH 495
           +DL G+ GR+++A  L   +P   D SV W  ++ +   H
Sbjct: 468 IDLYGKCGRLEDAMSLFYEIP--RDTSVPWNAIIASLGIH 505



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/305 (21%), Positives = 163/305 (53%), Gaps = 12/305 (3%)

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           V+  K +HA ++  G   N+ +   ++++Y     +S +   FD + +K++ +WN+II+ 
Sbjct: 35  VNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISA 94

Query: 290 YEKSG----SSECLN-MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           Y + G    +  C+N +FS        P+ +TF  I+ AC +L     G++VH  + + G
Sbjct: 95  YVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKVHCCVFKMG 151

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
            + ++ +A +L+ +Y++ G +  + K+F +M  +D+ +W +M+ G+  +G+   A+ + +
Sbjct: 152 FEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLN 211

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
            M   GV+ D I   ++L  C+ +  V  G+     +  + ++ +  +   ++++  + G
Sbjct: 212 RMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFG 271

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNMMGTYIIL 522
           R+++A  +   M  + D   W  ++ A +++  P+  L     +++  ++P+++ T + L
Sbjct: 272 RLQDAQMVFDQMEVR-DLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLL-TVVSL 329

Query: 523 SNIYA 527
           ++I++
Sbjct: 330 TSIFS 334



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 120/255 (47%), Gaps = 6/255 (2%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF--VEMV 104
           ++   L+  Y   G +  A T+FD++P +D +SW  ++ GYT     ++A   +  +E  
Sbjct: 360 VIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEEC 419

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
           R+ + PN  T  S++ A   + +L     +H   IK  L   ++V   L+D+Y  C   +
Sbjct: 420 RDTI-PNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCG-RL 477

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           ++A  +F ++     V W  +I      G G   L +FK+ML E V+ +  +F   + AC
Sbjct: 478 EDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSAC 537

Query: 225 ASTGWVSFGKLIHAAVIK-HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLIT 282
           + +G V  G+     + K +G   +L     ++D+  R   L  A +    M  + D   
Sbjct: 538 SHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASI 597

Query: 283 WNTIIAGYEKSGSSE 297
           W  +++  +  G++E
Sbjct: 598 WGALLSACKIYGNAE 612


>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
          Length = 644

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 181/559 (32%), Positives = 315/559 (56%), Gaps = 37/559 (6%)

Query: 40  LIPKGPSILATNLIKSYFD---EGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQA 96
           L+  G   + + ++ SY      G +  AR LFD +P+ D   +  +I  Y + +C  +A
Sbjct: 35  LVVHGVDDVTSQILASYCALPAGGGVWYARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEA 94

Query: 97  WTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDV 156
             +   M+R  + PN FTL  +LKAC  +++  +  + HG+ +K G  G ++V N+L+  
Sbjct: 95  LPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHS 154

Query: 157 YATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYS 216
           YA+   S+ ++R  F++M  +N VSW ++I GYA +GN      +F+ M  +G+  + ++
Sbjct: 155 YASAG-SLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFT 213

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR----------FD--- 263
               + AC++ G + FGKL+H+ ++  G   +L + N+++DMY +          FD   
Sbjct: 214 LVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMP 273

Query: 264 ------------------CLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSK 304
                              +  A  +F+++ EK +I+WN +I+ Y + G   E L+++++
Sbjct: 274 FKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNR 333

Query: 305 MKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGN 364
           MK    +P+ FT  ++++AC  L  L+ G+ +H  I     +  +AL N+L+DMYA+CG 
Sbjct: 334 MKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQ 393

Query: 365 ISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTA 424
           +  +  +FSEM  +++++W +++     HG  ++A+  F  MV     PD I F+A+L+A
Sbjct: 394 VDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRSMVFDAFPPDEITFVALLSA 453

Query: 425 CSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDES 483
           C+H GL++ G  YF++M   YNV P  E Y C+VDLLGR G++ +A +LIK MP +PD  
Sbjct: 454 CNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPDVV 513

Query: 484 VWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMR 543
           VWG LLGAC+ H    +GK    ++L+L+    G ++++SN+     +WE+  + RK+MR
Sbjct: 514 VWGALLGACRIHGHIQIGKQVIKQLLELEGMSGGLFVLISNMLYETHQWEDMKRLRKLMR 573

Query: 544 GMGSKKEVGMSWIEVRDKV 562
             G KK +G+S IE    +
Sbjct: 574 EWGMKKNMGVSSIETNSNI 592


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 196/563 (34%), Positives = 308/563 (54%), Gaps = 9/563 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            +  +L+  Y   GL+EEAR +F  M  RD+VSW  ++AG        +A  +F +   +
Sbjct: 193 FVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSS 252

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
                  T S+V+  C  +K L  A  +H   +K G      V  +LMD Y      +D 
Sbjct: 253 ITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAG-QLDK 311

Query: 167 ARLVFNDMKW-KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           A  VF  M   +N VSWT +I G   +G+      +F  M  +GV  N  ++S  +    
Sbjct: 312 ALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTIL---- 367

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           +    SF   IHA VIK  +     V  +++  Y +     +A   F  + +KD+++W+ 
Sbjct: 368 TVSEASFPPQIHAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSWSA 427

Query: 286 IIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAA-LSCGQQVHAGIVRR 343
           ++  Y ++G      N F KM      PN FT +S I ACA+ AA +  G+Q HA  ++ 
Sbjct: 428 MLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDACASPAAGVDLGRQFHAISIKH 487

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
                L +++AL+ MYA+ G+I ++Q +F   +DRDL++W SM+ GY  HG+ ++A+++F
Sbjct: 488 RCHDALCVSSALVSMYARKGSIENAQCVFERQTDRDLLSWNSMLSGYAQHGYSQKALDVF 547

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGR 462
            +M   G+  D + F++V+  C+HAGLV+EG +YF  M  DY + P  + Y C+VDL  R
Sbjct: 548 RQMEVEGIDMDGLTFLSVIMGCAHAGLVEEGQQYFDLMVRDYGITPTMDHYACMVDLYSR 607

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AG++ E   LI+ MPF    ++W  LLGAC+ H+   LGKLAA ++L L+P    TY++L
Sbjct: 608 AGKLDETMSLIEGMPFPAGPTIWRALLGACRVHKNVELGKLAAEKLLSLEPLDSATYVLL 667

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           SNIY+A GKW+E  + RK+M     +KE G SWI++++KV  FIA+DK    ++ +Y  L
Sbjct: 668 SNIYSAAGKWKEKDEVRKLMDTKKVRKEAGCSWIQIKNKVHFFIASDKSHPLSEQIYAKL 727

Query: 583 EMLIRHMNETAYEPDIDCLIHDL 605
             +   + +  Y PD   + HD+
Sbjct: 728 RAMTAKLKQEGYCPDTSFVPHDV 750



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 121/453 (26%), Positives = 227/453 (50%), Gaps = 13/453 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + T+L+  Y +   + + R +F+ M +R+VV+WT ++ GY          ++F  M    
Sbjct: 93  VGTSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEG 152

Query: 108 VNPNAFTLSSVLK--ACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           V PN FT SSVL   A +GM  L     VH  +IK G   +++V NSLM++YA C + ++
Sbjct: 153 VWPNPFTFSSVLSMVASQGMVDLGQH--VHAQSIKFGCCSTVFVCNSLMNMYAKCGL-VE 209

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            AR+VF  M+ ++ VSW TL+ G   +G     L +F +       +   ++S  +  CA
Sbjct: 210 EARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLCA 269

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLITWN 284
           +   +   + +H++V+KHGF S   VM +++D Y +   L  A   F  M+  +++++W 
Sbjct: 270 NLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWT 329

Query: 285 TIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +I G  ++G       +FS+M+ +  +PN  T+++I+    T++  S   Q+HA +++ 
Sbjct: 330 AMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTIL----TVSEASFPPQIHAQVIKT 385

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
             +    +  AL+  Y+K  +  ++  IF  +  +D+V+W++M+  Y   G    A   F
Sbjct: 386 NYECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDCNGATNAF 445

Query: 404 DEMVKSGVRPDRIVFMAVLTAC-SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
            +M   G++P+     + + AC S A  VD G ++      +  +    +   +V +  R
Sbjct: 446 IKMTMHGLKPNEFTISSAIDACASPAAGVDLGRQFHAISIKHRCHDALCVSSALVSMYAR 505

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            G ++ A  + +    + D   W  +L    +H
Sbjct: 506 KGSIENAQCVFERQTDR-DLLSWNSMLSGYAQH 537



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 98/312 (31%), Positives = 164/312 (52%), Gaps = 4/312 (1%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLE-GSIYVENSLMDVYATCCISMDNARLVFND 173
           L  ++K C  +        +H + ++ G + G I V  SL+D+Y      +D  R VF  
Sbjct: 58  LLGIIKICGSVPDRVLGKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLD-GRKVFEG 116

Query: 174 MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG 233
           M  +N V+WT+L+TGY  +G     + +F  M  EGV  NP++FS  +   AS G V  G
Sbjct: 117 MLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLG 176

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
           + +HA  IK G  S + V NS+++MY +   + +A   F  M  +D+++WNT++AG   +
Sbjct: 177 QHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLN 236

Query: 294 GSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
           G   E L +F   +S        T++++I  CA L  L   +Q+H+ +++ G      + 
Sbjct: 237 GRDLEALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVM 296

Query: 353 NALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411
            AL+D Y K G +  +  +F  MS  +++V+WT+M+ G   +G    A  LF  M + GV
Sbjct: 297 TALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGV 356

Query: 412 RPDRIVFMAVLT 423
            P+ + +  +LT
Sbjct: 357 APNDLTYSTILT 368



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 160/307 (52%), Gaps = 4/307 (1%)

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFG-SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
           ++ C S      GK +HA  ++ G    ++ V  S++DMY  +  + D  + F+ M +++
Sbjct: 62  IKICGSVPDRVLGKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKRN 121

Query: 280 LITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           ++TW +++ GY ++G   + +++F +M++E   PN FTF+S+++  A+   +  GQ VHA
Sbjct: 122 VVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVHA 181

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
             ++ G    + + N+L++MYAKCG + +++ +F  M  RD+V+W ++M G   +G   E
Sbjct: 182 QSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLE 241

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVD 458
           A++LF +   S        +  V+  C++   +    +   S+  +  +    +   ++D
Sbjct: 242 ALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMD 301

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH-RLPNLGKL-AALRVLDLKPNMM 516
              +AG++ +A ++   M    +   W  ++  C ++  +P    L + +R   + PN +
Sbjct: 302 AYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDL 361

Query: 517 GTYIILS 523
               IL+
Sbjct: 362 TYSTILT 368


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  344 bits (882), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 200/596 (33%), Positives = 314/596 (52%), Gaps = 54/596 (9%)

Query: 58  DEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSS 117
           + G +  AR +FDE+P+  V  W  MI GY+  NC     +++  M+ + + P+ FT   
Sbjct: 81  ESGDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPF 140

Query: 118 VLK------ACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
           +LK      A K  K L N A++HG      L+ +++V+   + +++ C + ++ AR +F
Sbjct: 141 LLKGFTKDMALKYGKVLLNHAVIHGF-----LDSNLFVQKGFIHLFSLCGL-VNYARKIF 194

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEM--LLEGVEMNPYSFSIAVRACASTGW 229
           +       V+W  +++GY           +F EM    E V  N  +  + + AC+    
Sbjct: 195 DMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKD 254

Query: 230 VSFGKLIHAAVIKHGF-GSNLPVMNSILDMY----------------------------- 259
           +  GK I+   IK G    NL + N+++DM+                             
Sbjct: 255 LVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVT 314

Query: 260 -----CRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPN 313
                CR D    A +YFD+M E+D ++W  +I GY +     E L +F  M+     P+
Sbjct: 315 GFANTCRIDL---ARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPD 371

Query: 314 CFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFS 373
            FT  SI+ ACA L AL  G+     I +  +  +  + NALIDMY KCGN+  ++KIF+
Sbjct: 372 EFTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFN 431

Query: 374 EMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDE 433
           EM  +D  TWT+M++G   +GHG+EA+ +F  M+++ V PD I ++ V+ AC+H GLV +
Sbjct: 432 EMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAK 491

Query: 434 GLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGAC 492
           G  +F +M   + + PN   YGC+VDLLGRAG +KEA E+I +MP KP+  VWG LLGAC
Sbjct: 492 GKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGAC 551

Query: 493 KEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVG 552
           + H+   L ++AA  +L+L+P     Y++L NIYAA  KW+     RK+M   G KK  G
Sbjct: 552 RVHKNVQLAEMAANEILELEPENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPG 611

Query: 553 MSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
            S +E+   V  F+A DK    ++ +Y  LE + + ++   Y PD   +  D+  E
Sbjct: 612 CSLMEMNGIVYEFVAGDKSHPQSKEIYAKLENMKQDLSNAGYSPDTSEVFLDVGEE 667



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 126/242 (52%), Gaps = 3/242 (1%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T+++  + +   I+ AR  FD+MPERD VSWT MI GY   N   +  T+F +M  + V 
Sbjct: 310 TSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVK 369

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P+ FT+ S+L AC  + +L           K  ++   ++ N+L+D+Y  C  +++ A+ 
Sbjct: 370 PDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCG-NVEKAKK 428

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           +FN+M+ K+  +WT +I G A++G+G   L +F  ML   V  +  ++   + AC   G 
Sbjct: 429 IFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGL 488

Query: 230 VSFGK-LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLITWNTII 287
           V+ GK       ++HG   NL     ++D+  R   L +A +    M  K + I W +++
Sbjct: 489 VAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLL 548

Query: 288 AG 289
             
Sbjct: 549 GA 550



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 117/248 (47%), Gaps = 7/248 (2%)

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDC--LSDANQYFDEMTEKDLITWNTIIAGYEKS 293
           IH+  IK G  SN   +  ++   C  +   +  A + FDE+ +  +  WNT+I GY + 
Sbjct: 54  IHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDEIPQPSVFIWNTMIKGYSRI 113

Query: 294 GSSEC-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ-QVHAGIVRRGLDGNLAL 351
             SE  ++++  M      P+ FTF  ++       AL  G+  ++  ++   LD NL +
Sbjct: 114 NCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFV 173

Query: 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK--S 409
               I +++ CG ++ ++KIF      ++VTW  ++ GY      +E+  LF EM K   
Sbjct: 174 QKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCE 233

Query: 410 GVRPDRIVFMAVLTACSH-AGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKE 468
            V P+ +  + +L+ACS    LV     Y K + +  V PN  +   ++D+    G +  
Sbjct: 234 CVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDA 293

Query: 469 AYELIKSM 476
           A  +   M
Sbjct: 294 ARGVFDEM 301



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 7/102 (6%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           K  + +   LI  YF  G +E+A+ +F+EM ++D  +WT MI G  +     +A T+F  
Sbjct: 404 KNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSY 463

Query: 103 MVRNEVNPNAFTLSSVLKAC-------KGMKSLSNAALVHGM 137
           M+   V P+  T   V+ AC       KG    SN A+ HG+
Sbjct: 464 MLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGI 505


>gi|356544234|ref|XP_003540559.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Glycine max]
          Length = 916

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 188/532 (35%), Positives = 309/532 (58%), Gaps = 11/532 (2%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y   G ++EA   F+ M  RD +SW  +I GY        A+++F  M+ + + P+
Sbjct: 359 LIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVGYVQEEVEAGAFSLFRRMILDGIVPD 418

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
             +L+S+L AC  +K L      H +++K GLE +++  +SL+D+Y+ C   + +A   +
Sbjct: 419 EVSLASILSACGNIKVLEAGQQFHCLSVKLGLETNLFAGSSLIDMYSKCG-DIKDAHKTY 477

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           + M  ++ VS   LI GYA   N    + +  EM + G++ +  +F+  +  C  +  V 
Sbjct: 478 SSMPERSVVSVNALIAGYALK-NTKESINLLHEMQILGLKPSEITFASLIDVCKGSAKVI 536

Query: 232 FGKLIHAAVIKHGF--GSNLPVMNSILDMYCRFDCLSDANQYFDEMTE-KDLITWNTIIA 288
            G  IH A++K G   GS   +  S+L MY     L+DAN  F E +  K ++ W  +I+
Sbjct: 537 LGLQIHCAIVKRGLLCGSEF-LGTSLLGMYMDSQRLADANILFSEFSSLKSIVMWTALIS 595

Query: 289 GYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           G+ ++  S+  LN++ +M+    SP+  TF +++ ACA L++L  G+++H+ I   G D 
Sbjct: 596 GHIQNECSDVALNLYREMRDNNISPDQATFVTVLQACALLSSLHDGREIHSLIFHTGFDL 655

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEM-SDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
           +   ++AL+DMYAKCG++  S ++F E+ + +D+++W SM++G+  +G+ K A+++FDEM
Sbjct: 656 DELTSSALVDMYAKCGDVKSSVQVFEELATKKDVISWNSMIVGFAKNGYAKCALKVFDEM 715

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGR 465
            +S + PD + F+ VLTACSHAG V EG + F  M N Y + P  + Y C+VDLLGR G 
Sbjct: 716 TQSCITPDDVTFLGVLTACSHAGWVYEGRQIFDVMVNYYGIEPRVDHYACMVDLLGRWGF 775

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           +KEA E I  +  +P+  +W  LLGAC+ H     G+ AA ++++L+P     Y++LSN+
Sbjct: 776 LKEAEEFIDKLEVEPNAMIWANLLGACRIHGDEKRGQRAAKKLIELEPQSSSPYVLLSNM 835

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQY 577
           YAA G W+E    R+ M     +K  G SWI V  +   F+A D   SH+ Y
Sbjct: 836 YAASGNWDEARSLRRTMIKKDIQKIPGCSWIVVGQETNLFVAGDI--SHSSY 885



 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 133/390 (34%), Positives = 231/390 (59%), Gaps = 5/390 (1%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPE--RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
             ++ +Y   G +++A  LF +MP   R+VV+W VMI+G+     + +A   F +M ++ 
Sbjct: 153 VTVLNAYISLGKLDDACQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHG 212

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V  +  TL+SVL A   + +L++  LVH  AIK+G E SIYV +SL+++Y  C +  D+A
Sbjct: 213 VKSSRSTLASVLSAIASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMP-DDA 271

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R VF+ +  KN + W  ++  Y+ +G     + +F +M+  G+  + ++++  +  CA  
Sbjct: 272 RQVFDAISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACF 331

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
            ++  G+ +H+A+IK  F SNL V N+++DMY +   L +A ++F+ MT +D I+WN II
Sbjct: 332 EYLEVGRQLHSAIIKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAII 391

Query: 288 AGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            GY ++   +   ++F +M  +   P+  +  SI++AC  +  L  GQQ H   V+ GL+
Sbjct: 392 VGYVQEEVEAGAFSLFRRMILDGIVPDEVSLASILSACGNIKVLEAGQQFHCLSVKLGLE 451

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            NL   ++LIDMY+KCG+I D+ K +S M +R +V+  +++ GY A  + KE+I L  EM
Sbjct: 452 TNLFAGSSLIDMYSKCGDIKDAHKTYSSMPERSVVSVNALIAGY-ALKNTKESINLLHEM 510

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
              G++P  I F +++  C  +  V  GL+
Sbjct: 511 QILGLKPSEITFASLIDVCKGSAKVILGLQ 540



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 116/444 (26%), Positives = 231/444 (52%), Gaps = 3/444 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A++LI  Y    + ++AR +FD + +++++ W  M+  Y+     +    +F++M+   
Sbjct: 254 VASSLINMYGKCQMPDDARQVFDAISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCG 313

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           ++P+ FT +S+L  C   + L     +H   IK+    +++V N+L+D+YA    ++  A
Sbjct: 314 IHPDEFTYTSILSTCACFEYLEVGRQLHSAIIKKRFTSNLFVNNALIDMYAKAG-ALKEA 372

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
              F  M +++ +SW  +I GY       G   +F+ M+L+G+  +  S +  + AC + 
Sbjct: 373 GKHFEHMTYRDHISWNAIIVGYVQEEVEAGAFSLFRRMILDGIVPDEVSLASILSACGNI 432

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  G+  H   +K G  +NL   +S++DMY +   + DA++ +  M E+ +++ N +I
Sbjct: 433 KVLEAGQQFHCLSVKLGLETNLFAGSSLIDMYSKCGDIKDAHKTYSSMPERSVVSVNALI 492

Query: 288 AGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD- 346
           AGY    + E +N+  +M+     P+  TF S+I  C   A +  G Q+H  IV+RGL  
Sbjct: 493 AGYALKNTKESINLLHEMQILGLKPSEITFASLIDVCKGSAKVILGLQIHCAIVKRGLLC 552

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSD-RDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           G+  L  +L+ MY     ++D+  +FSE S  + +V WT+++ G+  +     A+ L+ E
Sbjct: 553 GSEFLGTSLLGMYMDSQRLADANILFSEFSSLKSIVMWTALISGHIQNECSDVALNLYRE 612

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M  + + PD+  F+ VL AC+    + +G +    +     + ++     +VD+  + G 
Sbjct: 613 MRDNNISPDQATFVTVLQACALLSSLHDGREIHSLIFHTGFDLDELTSSALVDMYAKCGD 672

Query: 466 VKEAYELIKSMPFKPDESVWGPLL 489
           VK + ++ + +  K D   W  ++
Sbjct: 673 VKSSVQVFEELATKKDVISWNSMI 696



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 129/455 (28%), Positives = 227/455 (49%), Gaps = 42/455 (9%)

Query: 65  ARTLFDE--MPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKAC 122
           ART+F     P    VSWT +I+GY      ++A  +F +M RN   P+   L +VL A 
Sbjct: 101 ARTIFASAPFPHLHTVSWTALISGYVQAGLPHEALHIFDKM-RNSAVPDQVALVTVLNAY 159

Query: 123 KGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW--KNDV 180
             +  L                                    D+A  +F  M    +N V
Sbjct: 160 ISLGKL------------------------------------DDACQLFQQMPIPIRNVV 183

Query: 181 SWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAV 240
           +W  +I+G+A + +    L  F +M   GV+ +  + +  + A AS   ++ G L+HA  
Sbjct: 184 AWNVMISGHAKTAHYEEALAFFHQMSKHGVKSSRSTLASVLSAIASLAALNHGLLVHAHA 243

Query: 241 IKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECL 299
           IK GF S++ V +S+++MY +     DA Q FD +++K++I WN ++  Y ++G  S  +
Sbjct: 244 IKQGFESSIYVASSLINMYGKCQMPDDARQVFDAISQKNMIVWNAMLGVYSQNGFLSNVM 303

Query: 300 NMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMY 359
            +F  M S    P+ FT+TSI++ CA    L  G+Q+H+ I+++    NL + NALIDMY
Sbjct: 304 ELFLDMISCGIHPDEFTYTSILSTCACFEYLEVGRQLHSAIIKKRFTSNLFVNNALIDMY 363

Query: 360 AKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFM 419
           AK G + ++ K F  M+ RD ++W ++++GY        A  LF  M+  G+ PD +   
Sbjct: 364 AKAGALKEAGKHFEHMTYRDHISWNAIIVGYVQEEVEAGAFSLFRRMILDGIVPDEVSLA 423

Query: 420 AVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
           ++L+AC +  +++ G ++        +  N      ++D+  + G +K+A++   SMP +
Sbjct: 424 SILSACGNIKVLEAGQQFHCLSVKLGLETNLFAGSSLIDMYSKCGDIKDAHKTYSSMPER 483

Query: 480 PDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514
              SV   + G   ++   ++  L  +++L LKP+
Sbjct: 484 SVVSVNALIAGYALKNTKESINLLHEMQILGLKPS 518



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 101/386 (26%), Positives = 191/386 (49%), Gaps = 43/386 (11%)

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
           +P+ FT +  L AC  +++L     VH   IK GLE + + + +L+ +YA C  S+  AR
Sbjct: 44  SPDQFTFAVTLSACAKLQNLHLGRAVHSCVIKSGLESTSFCQGALIHLYAKCN-SLTCAR 102

Query: 169 LVFNDMKWK--NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
            +F    +   + VSWT LI+GY  +G  +  L +F +M                R  A 
Sbjct: 103 TIFASAPFPHLHTVSWTALISGYVQAGLPHEALHIFDKM----------------RNSAV 146

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM--TEKDLITWN 284
              V+                    + ++L+ Y     L DA Q F +M    ++++ WN
Sbjct: 147 PDQVA--------------------LVTVLNAYISLGKLDDACQLFQQMPIPIRNVVAWN 186

Query: 285 TIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +I+G+ K+    E L  F +M       +  T  S+++A A+LAAL+ G  VHA  +++
Sbjct: 187 VMISGHAKTAHYEEALAFFHQMSKHGVKSSRSTLASVLSAIASLAALNHGLLVHAHAIKQ 246

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G + ++ +A++LI+MY KC    D++++F  +S ++++ W +M+  Y  +G     +ELF
Sbjct: 247 GFESSIYVASSLINMYGKCQMPDDARQVFDAISQKNMIVWNAMLGVYSQNGFLSNVMELF 306

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
            +M+  G+ PD   + ++L+ C+    ++ G +   ++       N  +   ++D+  +A
Sbjct: 307 LDMISCGIHPDEFTYTSILSTCACFEYLEVGRQLHSAIIKKRFTSNLFVNNALIDMYAKA 366

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLL 489
           G +KEA +  + M ++ D   W  ++
Sbjct: 367 GALKEAGKHFEHMTYR-DHISWNAII 391



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 129/260 (49%), Gaps = 10/260 (3%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPE-RDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           G   L T+L+  Y D   + +A  LF E    + +V WT +I+G+    C + A  ++ E
Sbjct: 553 GSEFLGTSLLGMYMDSQRLADANILFSEFSSLKSIVMWTALISGHIQNECSDVALNLYRE 612

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M  N ++P+  T  +VL+AC  + SL +   +H +    G +      ++L+D+YA C  
Sbjct: 613 MRDNNISPDQATFVTVLQACALLSSLHDGREIHSLIFHTGFDLDELTSSALVDMYAKCG- 671

Query: 163 SMDNARLVFNDMKWKNDV-SWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
            + ++  VF ++  K DV SW ++I G+A +G     L VF EM    +  +  +F   +
Sbjct: 672 DVKSSVQVFEELATKKDVISWNSMIVGFAKNGYAKCALKVFDEMTQSCITPDDVTFLGVL 731

Query: 222 RACASTGWVSFGKLIHAAVIK-HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKD 279
            AC+  GWV  G+ I   ++  +G    +     ++D+  R+  L +A ++ D++  E +
Sbjct: 732 TACSHAGWVYEGRQIFDVMVNYYGIEPRVDHYACMVDLLGRWGFLKEAEEFIDKLEVEPN 791

Query: 280 LITWNTI-----IAGYEKSG 294
            + W  +     I G EK G
Sbjct: 792 AMIWANLLGACRIHGDEKRG 811



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 3/161 (1%)

Query: 283 WNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           WN  + G +   S   L  ++   +   SP+ FTF   ++ACA L  L  G+ VH+ +++
Sbjct: 16  WNWRVQGTKHYSSERVLQFYASFMNSGHSPDQFTFAVTLSACAKLQNLHLGRAVHSCVIK 75

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDL--VTWTSMMIGYGAHGHGKEAI 400
            GL+       ALI +YAKC +++ ++ IF+      L  V+WT+++ GY   G   EA+
Sbjct: 76  SGLESTSFCQGALIHLYAKCNSLTCARTIFASAPFPHLHTVSWTALISGYVQAGLPHEAL 135

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441
            +FD+M  S V PD++  + VL A    G +D+  + F+ M
Sbjct: 136 HIFDKMRNSAV-PDQVALVTVLNAYISLGKLDDACQLFQQM 175


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 180/519 (34%), Positives = 300/519 (57%), Gaps = 11/519 (2%)

Query: 98  TVFVEMVRNEVNPNAFT--------LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYV 149
           +V     + EV+P  ++        +  +L+ C    ++  A   HG  I+  LEG + +
Sbjct: 39  SVLASYDQEEVSPGRYSNEFSNRNLVHEILQLCARNGAVMEAKACHGKIIRIDLEGDVTL 98

Query: 150 ENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG 209
            N L++ Y+ C   ++ AR VF+ M  ++ VSW T+I  Y  +      L +F EM  EG
Sbjct: 99  LNVLINAYSKCGF-VELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEG 157

Query: 210 VEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDAN 269
            + + ++ S  + AC         K +H   +K     NL V  ++LD+Y +   + DA 
Sbjct: 158 FKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAV 217

Query: 270 QYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLA 328
           Q F+ M +K  +TW++++AGY +     E L ++ + +      N FT +S+I AC+ LA
Sbjct: 218 QVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLA 277

Query: 329 ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMI 388
           AL  G+Q+HA I + G   N+ +A++ +DMYAKCG++ +S  IFSE+ +++L  W +++ 
Sbjct: 278 ALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIIS 337

Query: 389 GYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVN 447
           G+  H   KE + LF++M + G+ P+ + F ++L+ C H GLV+EG ++FK M   Y ++
Sbjct: 338 GFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLS 397

Query: 448 PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALR 507
           PN   Y C+VD+LGRAG + EAYELIKS+PF P  S+WG LL +C+ ++   L ++AA +
Sbjct: 398 PNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEK 457

Query: 508 VLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIA 567
           + +L+P   G +++LSNIYAA  +WEE AK RK++R    KK  G SWI+++DKV  F  
Sbjct: 458 LFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSV 517

Query: 568 NDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
            +      + +   L+ L+    +  Y+P ++  +HD+E
Sbjct: 518 GESGHPRIREICSTLDNLVIKFRKFGYKPSVEHELHDVE 556



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 106/348 (30%), Positives = 186/348 (53%), Gaps = 4/348 (1%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           +G   L   LI +Y   G +E AR +FD M ER +VSW  MI  YT     ++A  +F+E
Sbjct: 93  EGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLE 152

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M       + FT+SSVL AC           +H +++K  ++ ++YV  +L+D+YA C +
Sbjct: 153 MRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGM 212

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
             D  + VF  M+ K+ V+W++++ GY  + N    L +++      +E N ++ S  + 
Sbjct: 213 IKDAVQ-VFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVIC 271

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           AC++   +  GK +HA + K GFGSN+ V +S +DMY +   L ++   F E+ EK+L  
Sbjct: 272 ACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLEL 331

Query: 283 WNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI- 340
           WNTII+G+ K     E + +F KM+ +   PN  TF+S+++ C     +  G++    + 
Sbjct: 332 WNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMR 391

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMM 387
              GL  N+   + ++D+  + G +S++ ++   +  D     W S++
Sbjct: 392 TTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLL 439


>gi|413946224|gb|AFW78873.1| hypothetical protein ZEAMMB73_227843 [Zea mays]
          Length = 778

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 181/524 (34%), Positives = 294/524 (56%), Gaps = 3/524 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L   L+  Y   G +E +  +F+ M E++ VSW   I  +     H     +F  M  ++
Sbjct: 257 LGNALVDMYGKFGDLESSMHVFNGMQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHD 316

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V P + TLSS+L A   +        +HG +I+  +E  I++ N+LMD+YA    S + A
Sbjct: 317 VTPGSVTLSSLLPALVDLGYFHLGKELHGYSIRRAVESDIFIANTLMDMYAKFGCS-EKA 375

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             +F +++ +N VSW  +I     +G       +  EM   G   N ++    + AC+  
Sbjct: 376 SAIFENIEVRNVVSWNAMIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNLLPACSRV 435

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             V  GK IHA  I+    S+L V N+++D+Y +   L+ A   FD  +EKD +++NT+I
Sbjct: 436 ASVKMGKQIHAWSIRRSLMSDLFVSNALIDVYAKCGQLNLARYIFDR-SEKDGVSYNTLI 494

Query: 288 AGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            GY +S    E L++F +M+      +  +F   ++AC+ L+A   G+++H  +V+R LD
Sbjct: 495 VGYSQSQCCFESLHLFQQMRLAGIEHDAVSFMGCLSACSNLSAFKQGKEIHGVLVKRLLD 554

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            +  LAN+L+D+Y K G +  + KIF+ ++ +D+ +W +M++GYG HG    A ELFD M
Sbjct: 555 SHPFLANSLLDVYTKGGMLDTASKIFNRITQKDVASWNTMILGYGMHGQIDVAFELFDLM 614

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
              G+  D + ++AVL+ CSH GLVD G KYF  M   N+ P +  Y C+VDLLGRAG++
Sbjct: 615 KDDGIEYDHVSYIAVLSVCSHGGLVDRGKKYFSQMIAQNIKPQQMHYACMVDLLGRAGQL 674

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            E+ E+I++MPF+ +  VWG LLG+C+ H    L +LAA  + +LKP   G Y +L N+Y
Sbjct: 675 SESAEIIRNMPFRANSDVWGALLGSCRIHGDIELARLAAEHLFELKPENSGYYTLLRNMY 734

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDK 570
           +  G W E    +K+M+    +K    SW++  +K+  F+  D+
Sbjct: 735 SESGMWNEANGVKKLMKSRKVQKNPAYSWVQSGNKLQAFLVGDE 778



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 128/445 (28%), Positives = 243/445 (54%), Gaps = 5/445 (1%)

Query: 47  ILATNLIKSYFDE-GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + A N + +++   G   +AR +FDEMP RDVVSW  +++   +      A    V M+R
Sbjct: 154 VFAGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSALLTNGMLEDAKRAVVGMMR 213

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           + V  N  +L S+L AC   +       VHG+ +K GL   + + N+L+D+Y      ++
Sbjct: 214 SGVPVNVASLVSILPACGTERDEGFGLCVHGLVLKFGLNSVVNLGNALVDMYGKFG-DLE 272

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           ++  VFN M+ KN+VSW + I  +AH+G     L +F+ M    V     + S  + A  
Sbjct: 273 SSMHVFNGMQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHDVTPGSVTLSSLLPALV 332

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
             G+   GK +H   I+    S++ + N+++DMY +F C   A+  F+ +  +++++WN 
Sbjct: 333 DLGYFHLGKELHGYSIRRAVESDIFIANTLMDMYAKFGCSEKASAIFENIEVRNVVSWNA 392

Query: 286 IIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +IA   ++G+ +E   +  +M+     PN FT  +++ AC+ +A++  G+Q+HA  +RR 
Sbjct: 393 MIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQIHAWSIRRS 452

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           L  +L ++NALID+YAKCG ++ ++ IF + S++D V++ ++++GY       E++ LF 
Sbjct: 453 LMSDLFVSNALIDVYAKCGQLNLARYIF-DRSEKDGVSYNTLIVGYSQSQCCFESLHLFQ 511

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
           +M  +G+  D + FM  L+ACS+     +G +    +    ++ +  +   ++D+  + G
Sbjct: 512 QMRLAGIEHDAVSFMGCLSACSNLSAFKQGKEIHGVLVKRLLDSHPFLANSLLDVYTKGG 571

Query: 465 RVKEAYELIKSMPFKPDESVWGPLL 489
            +  A ++   +  K D + W  ++
Sbjct: 572 MLDTASKIFNRITQK-DVASWNTMI 595



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 113/394 (28%), Positives = 184/394 (46%), Gaps = 8/394 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMP--ERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           LA  L+ SY     I  A  +    P   R    W  +     S     +A  V+  MVR
Sbjct: 49  LAGALLLSYAALPDIPSAHLILRHHPFRLRSAFLWNSLSRALASAALPCEALRVYNRMVR 108

Query: 106 NEVNPNAFTL---SSVLKACKGMKSLSNAALVHGMAIKEGLE-GSIYVENSLMDVYATCC 161
           + V P+  T         A    +  +  A +H  A++ GL    ++  N+L+  YA C 
Sbjct: 109 SGVRPDDRTFPFALHAAAAVAQAEHPAKGAELHAAALRRGLLLADVFAGNTLVTFYAVCG 168

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
            + D AR VF++M  ++ VSW +L++    +G           M+  GV +N  S    +
Sbjct: 169 RAAD-ARRVFDEMPARDVVSWNSLVSALLTNGMLEDAKRAVVGMMRSGVPVNVASLVSIL 227

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
            AC +     FG  +H  V+K G  S + + N+++DMY +F  L  +   F+ M EK+ +
Sbjct: 228 PACGTERDEGFGLCVHGLVLKFGLNSVVNLGNALVDMYGKFGDLESSMHVFNGMQEKNEV 287

Query: 282 TWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           +WN+ I  +  +G  E  L MF  M     +P   T +S++ A   L     G+++H   
Sbjct: 288 SWNSAIGCFAHAGFHEDVLEMFRLMSEHDVTPGSVTLSSLLPALVDLGYFHLGKELHGYS 347

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           +RR ++ ++ +AN L+DMYAK G    +  IF  +  R++V+W +M+     +G   EA 
Sbjct: 348 IRRAVESDIFIANTLMDMYAKFGCSEKASAIFENIEVRNVVSWNAMIANLTQNGAEAEAF 407

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434
            L  EM K+G  P+    + +L ACS    V  G
Sbjct: 408 RLVIEMQKNGECPNSFTLVNLLPACSRVASVKMG 441



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 120/265 (45%), Gaps = 9/265 (3%)

Query: 238 AAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE--MTEKDLITWNTIIAGYEKSG- 294
           A+++     ++ P+  ++L  Y     +  A+          +    WN++      +  
Sbjct: 36  ASLVSGALTASFPLAGALLLSYAALPDIPSAHLILRHHPFRLRSAFLWNSLSRALASAAL 95

Query: 295 SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAAL---SCGQQVHAGIVRRGLD-GNLA 350
             E L ++++M      P+  TF   + A A +A     + G ++HA  +RRGL   ++ 
Sbjct: 96  PCEALRVYNRMVRSGVRPDDRTFPFALHAAAAVAQAEHPAKGAELHAAALRRGLLLADVF 155

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
             N L+  YA CG  +D++++F EM  RD+V+W S++     +G  ++A      M++SG
Sbjct: 156 AGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSALLTNGMLEDAKRAVVGMMRSG 215

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470
           V  +    +++L AC        GL     +  + +N    +   +VD+ G+ G ++ + 
Sbjct: 216 VPVNVASLVSILPACGTERDEGFGLCVHGLVLKFGLNSVVNLGNALVDMYGKFGDLESSM 275

Query: 471 ELIKSMPFKPDESVWGPLLGACKEH 495
            +   M  K +E  W   +G C  H
Sbjct: 276 HVFNGMQEK-NEVSWNSAIG-CFAH 298


>gi|356506341|ref|XP_003521943.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial-like [Glycine max]
          Length = 895

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 193/550 (35%), Positives = 312/550 (56%), Gaps = 19/550 (3%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTS-FNCHN-QAWTVFVEMV 104
            +   L+  Y   G+++EAR +FDEMPERD+VSW  MI+GY     C+  +A  +FV MV
Sbjct: 211 FIGNALVTMYSRWGMLDEARRVFDEMPERDLVSWNAMISGYAQEGKCYGLEAVLLFVNMV 270

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
           R+ +  +  +L+  + AC  MK+L     +HG+  K G    + V N LM  Y+ C +  
Sbjct: 271 RHGMLIDHVSLTGAVSACGHMKNLELGRQIHGLTQKVGYGTHVSVCNVLMSTYSKCEVPK 330

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           D A+ VF  +  +N VSWTT+I     S +    + +F  M + GV  N  +F   + A 
Sbjct: 331 D-AKAVFESISNRNVVSWTTMI-----SIDEEDAVSLFNAMRVNGVYPNDVTFIGLIHAV 384

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
                V+ G  IH   IK  F S   V NS + MY +F+C+ ++ + F+E+  ++ ++WN
Sbjct: 385 TIRNLVTEGLTIHGLCIKSCFLSEQTVSNSFITMYAKFECIQESTKIFEELNCRETVSWN 444

Query: 285 TIIAGYEKSGSSE--CLNMFSKMKSERFSPNCFTFTSIIAACATLA--ALSCGQQVHAGI 340
            +I+GY ++GS +   L   S +K     PN +TF S++ A A     +L+ G+  H+ +
Sbjct: 445 ALISGYAQNGSYKEALLTYLSAVK--EIKPNQYTFGSVLNAIAAAEDISLNHGKSCHSHL 502

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           ++ GL  +  ++ AL+DMY K G+I +SQ++F+E  +R    WT+++  Y  HG  +  +
Sbjct: 503 LKLGLGTDPIVSGALLDMYGKRGDIIESQRVFNETLERTQFAWTAIISAYARHGDFESVM 562

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDL 459
            L+ EM + G+ PD I F++VL AC   G+VD G + F SM   +++ P  E Y  +VD+
Sbjct: 563 SLYTEMEREGINPDSITFLSVLAACCRKGMVDAGHRVFDSMVKKHSIEPTSEHYSIMVDM 622

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
           LGR GR+ EA EL+  +P  P  SV   LLG+C+ H    + +    R++++ P   G Y
Sbjct: 623 LGRVGRLDEAEELMHQIPGGPGLSVLQSLLGSCRLHGNMEMAEKVVGRLIEMDPASSGPY 682

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRD----KVCGFIANDKMGSHT 575
           ++++N+YA +GKWE+ A+ R+ MRG G KKEVG SW++V +     + GF + DK    +
Sbjct: 683 VLMANLYAEKGKWEKVAEVRRGMRGRGVKKEVGFSWVDVSNVDSLYLHGFSSGDKSHPES 742

Query: 576 QYVYGVLEML 585
           + +  + E L
Sbjct: 743 ENICKIAEFL 752



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 118/455 (25%), Positives = 231/455 (50%), Gaps = 20/455 (4%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGY-TSFNCHNQAWTVFVEMVRN 106
           ++ +L+K Y   G   +A  +F+ +   D+VSW  +++G+  S +  N A +    M   
Sbjct: 114 VSNSLMKMYCKSGNFGKALIVFENLSHPDIVSWNTVLSGFEESVDALNFARS----MHYC 169

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            +  +  T +S L  C G         +H + +K GL   +++ N+L+ +Y+   + +D 
Sbjct: 170 GIAFDPVTYTSALAFCWGDHGFLFGWQLHSLVVKCGLGCEVFIGNALVTMYSRWGM-LDE 228

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYG--GLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           AR VF++M  ++ VSW  +I+GYA  G  YG   + +F  M+  G+ ++  S + AV AC
Sbjct: 229 ARRVFDEMPERDLVSWNAMISGYAQEGKCYGLEAVLLFVNMVRHGMLIDHVSLTGAVSAC 288

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
                +  G+ IH    K G+G+++ V N ++  Y + +   DA   F+ ++ +++++W 
Sbjct: 289 GHMKNLELGRQIHGLTQKVGYGTHVSVCNVLMSTYSKCEVPKDAKAVFESISNRNVVSWT 348

Query: 285 TIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           T+I+  E+    + +++F+ M+     PN  TF  +I A      ++ G  +H   ++  
Sbjct: 349 TMISIDEE----DAVSLFNAMRVNGVYPNDVTFIGLIHAVTIRNLVTEGLTIHGLCIKSC 404

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
                 ++N+ I MYAK   I +S KIF E++ R+ V+W +++ GY  +G  KEA+  + 
Sbjct: 405 FLSEQTVSNSFITMYAKFECIQESTKIFEELNCRETVSWNALISGYAQNGSYKEALLTYL 464

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDY----NVNPNKEIYGCVVDLL 460
             VK  ++P++  F +VL A + A   D  L + KS + +     +  +  + G ++D+ 
Sbjct: 465 SAVKE-IKPNQYTFGSVLNAIAAA--EDISLNHGKSCHSHLLKLGLGTDPIVSGALLDMY 521

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           G+ G + E+  +      +  +  W  ++ A   H
Sbjct: 522 GKRGDIIESQRVFNE-TLERTQFAWTAIISAYARH 555



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 129/501 (25%), Positives = 238/501 (47%), Gaps = 40/501 (7%)

Query: 45  PSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHN-----QAWTV 99
           P  L+  L   +F    ++     FD +P  +  S       ++  NC +     QA T 
Sbjct: 12  PLQLSFRLCSKFFHA--LKHDHHQFDFIPHPNAAS-----VNHSMLNCLHSRLPFQALTA 64

Query: 100 FVE--MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVY 157
           F     + +  N +  T++  LKAC+G   L     +HG A+  G    + V NSLM +Y
Sbjct: 65  FKNHFQLHSLENVDEVTVALSLKACQGESKL--GCQIHGFAVCSGFVSFVTVSNSLMKMY 122

Query: 158 ATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSF 217
                +   A +VF ++   + VSW T+++G+  S +    L   + M   G+  +P ++
Sbjct: 123 CKSG-NFGKALIVFENLSHPDIVSWNTVLSGFEESVDA---LNFARSMHYCGIAFDPVTY 178

Query: 218 SIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE 277
           + A+  C       FG  +H+ V+K G G  + + N+++ MY R+  L +A + FDEM E
Sbjct: 179 TSALAFCWGDHGFLFGWQLHSLVVKCGLGCEVFIGNALVTMYSRWGMLDEARRVFDEMPE 238

Query: 278 KDLITWNTIIAGYEKSGSS---ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334
           +DL++WN +I+GY + G     E + +F  M       +  + T  ++AC  +  L  G+
Sbjct: 239 RDLVSWNAMISGYAQEGKCYGLEAVLLFVNMVRHGMLIDHVSLTGAVSACGHMKNLELGR 298

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
           Q+H    + G   ++++ N L+  Y+KC    D++ +F  +S+R++V+WT+M+       
Sbjct: 299 QIHGLTQKVGYGTHVSVCNVLMSTYSKCEVPKDAKAVFESISNRNVVSWTTMI-----SI 353

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG 454
             ++A+ LF+ M  +GV P+ + F+ ++ A +   LV EGL              + +  
Sbjct: 354 DEEDAVSLFNAMRVNGVYPNDVTFIGLIHAVTIRNLVTEGLTIHGLCIKSCFLSEQTVSN 413

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL------GACKEHRLPNLGKLAALRV 508
             + +  +   ++E+ ++ + +  +   S W  L+      G+ KE  L  L       V
Sbjct: 414 SFITMYAKFECIQESTKIFEELNCRETVS-WNALISGYAQNGSYKEALLTYLSA-----V 467

Query: 509 LDLKPNMMGTYIILSNIYAAE 529
            ++KPN      +L+ I AAE
Sbjct: 468 KEIKPNQYTFGSVLNAIAAAE 488


>gi|357130605|ref|XP_003566938.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 670

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 176/512 (34%), Positives = 287/512 (56%), Gaps = 5/512 (0%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           + LI  Y     +E+AR +F+EM ERDVVSWT+MI+ +      +       EM      
Sbjct: 161 SGLINFYGASKSVEDARKVFEEMHERDVVSWTLMISAFAQCGQWDNVLRSLDEMQSEGTK 220

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNAR 168
           PN  T+ S+L AC  ++++     V+    + G+E  + + N+L+ +Y  C C+S  +A 
Sbjct: 221 PNKITIISLLSACGQVRAVDKGLWVYARVDEYGIEADVDIRNALIGMYVKCGCMS--DAW 278

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
             F  M  +N  SW TLI G+  +G     L +F+EML +GV  +  +    +   A  G
Sbjct: 279 KTFKGMPIRNTKSWNTLIDGFVQNGKHKEALTMFEEMLSDGVIPDVITLVSVLSTYAQLG 338

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            +  G+ +H  +  H    ++ + NS+++MY +   ++ A   F+ M  +D+++W  ++ 
Sbjct: 339 DLQQGRYLHNYIKDHEIHCDIILQNSLINMYAKCGDMAAAEIIFENMARRDIVSWTAMVC 398

Query: 289 GYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           GY K        N+F  MK      +     S+++AC+ L AL  G+++H+ I  + +  
Sbjct: 399 GYVKGLQFRTAFNLFDDMKVRDVMASEMALVSLLSACSQLGALDKGREIHSYIKEKSVRT 458

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           ++ L +AL+DMYAKCG I  + +IFS M  +  + W +M+ G  + G GKEA+ LF++++
Sbjct: 459 DMWLESALVDMYAKCGCIDAAAEIFSRMRHKQTLAWNAMIGGLASQGQGKEAVALFEQLL 518

Query: 408 K-SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
           K    +PD I    VL AC+H G+VDEGL YF  M    + P+ E YGC+VDLLGRAG +
Sbjct: 519 KLRDPKPDAITLKVVLCACTHVGMVDEGLHYFNLMLTLGIVPDNEHYGCIVDLLGRAGLL 578

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            EAY  I+ MP +P+  +WG LL AC+ H    LGK+    ++DL PN +G ++++SN++
Sbjct: 579 DEAYNFIQKMPIQPNPVIWGSLLAACRVHHRMELGKIIGQHIIDLAPNDVGAHVLISNLH 638

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEV 558
           A EG+W++  + R +M     +K  G S I+V
Sbjct: 639 AEEGQWDDVEQVRGMMGSRRVEKSPGHSSIQV 670



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 142/502 (28%), Positives = 258/502 (51%), Gaps = 20/502 (3%)

Query: 31  KSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSF 90
           ++ + SDP +  +  ++LA+ +  S  D   +  AR +FD M +   + W  MI GY S 
Sbjct: 43  RAHLGSDPCVAGRLVTLLASPV--SRHD---MPYARKVFDRMAQPTAIVWNCMIRGYNSC 97

Query: 91  NCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAAL---VHGMAIKEGLEGSI 147
           +    A  +F  M R+ V+P+ +T+++V ++     S    A    VH +  + G    +
Sbjct: 98  HAPMDALELFRAMRRSGVSPDNYTMAAVAQSSAAFASWKGRATGDAVHALVQRIGFASDL 157

Query: 148 YVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLL 207
           +V + L++ Y     S+++AR VF +M  ++ VSWT +I+ +A  G     L    EM  
Sbjct: 158 FVMSGLINFYGA-SKSVEDARKVFEEMHERDVVSWTLMISAFAQCGQWDNVLRSLDEMQS 216

Query: 208 EGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSD 267
           EG + N  +    + AC     V  G  ++A V ++G  +++ + N+++ MY +  C+SD
Sbjct: 217 EGTKPNKITIISLLSACGQVRAVDKGLWVYARVDEYGIEADVDIRNALIGMYVKCGCMSD 276

Query: 268 ANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACAT 326
           A + F  M  ++  +WNT+I G+ ++G   E L MF +M S+   P+  T  S+++  A 
Sbjct: 277 AWKTFKGMPIRNTKSWNTLIDGFVQNGKHKEALTMFEEMLSDGVIPDVITLVSVLSTYAQ 336

Query: 327 LAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSM 386
           L  L  G+ +H  I    +  ++ L N+LI+MYAKCG+++ ++ IF  M+ RD+V+WT+M
Sbjct: 337 LGDLQQGRYLHNYIKDHEIHCDIILQNSLINMYAKCGDMAAAEIIFENMARRDIVSWTAM 396

Query: 387 MIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV 446
           + GY      + A  LFD+M    V    +  +++L+ACS  G +D+G +    + + +V
Sbjct: 397 VCGYVKGLQFRTAFNLFDDMKVRDVMASEMALVSLLSACSQLGALDKGREIHSYIKEKSV 456

Query: 447 NPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAA- 505
             +  +   +VD+  + G +  A E+   M  K   + W  ++G          GK A  
Sbjct: 457 RTDMWLESALVDMYAKCGCIDAAAEIFSRMRHKQTLA-WNAMIGGLASQ---GQGKEAVA 512

Query: 506 -----LRVLDLKPNMMGTYIIL 522
                L++ D KP+ +   ++L
Sbjct: 513 LFEQLLKLRDPKPDAITLKVVL 534



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 106/374 (28%), Positives = 195/374 (52%), Gaps = 13/374 (3%)

Query: 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD--NARLVF 171
           +L + L AC    S +N A +HG  ++  L     V   L+ + A+     D   AR VF
Sbjct: 20  SLLAHLDACA---SRANLAELHGRLVRAHLGSDPCVAGRLVTLLASPVSRHDMPYARKVF 76

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           + M     + W  +I GY         L +F+ M   GV  +P ++++A  A +S  + S
Sbjct: 77  DRMAQPTAIVWNCMIRGYNSCHAPMDALELFRAMRRSGV--SPDNYTMAAVAQSSAAFAS 134

Query: 232 F-----GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
           +     G  +HA V + GF S+L VM+ +++ Y     + DA + F+EM E+D+++W  +
Sbjct: 135 WKGRATGDAVHALVQRIGFASDLFVMSGLINFYGASKSVEDARKVFEEMHERDVVSWTLM 194

Query: 287 IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+ + + G     L    +M+SE   PN  T  S+++AC  + A+  G  V+A +   G+
Sbjct: 195 ISAFAQCGQWDNVLRSLDEMQSEGTKPNKITIISLLSACGQVRAVDKGLWVYARVDEYGI 254

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           + ++ + NALI MY KCG +SD+ K F  M  R+  +W +++ G+  +G  KEA+ +F+E
Sbjct: 255 EADVDIRNALIGMYVKCGCMSDAWKTFKGMPIRNTKSWNTLIDGFVQNGKHKEALTMFEE 314

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M+  GV PD I  ++VL+  +  G + +G      + D+ ++ +  +   ++++  + G 
Sbjct: 315 MLSDGVIPDVITLVSVLSTYAQLGDLQQGRYLHNYIKDHEIHCDIILQNSLINMYAKCGD 374

Query: 466 VKEAYELIKSMPFK 479
           +  A  + ++M  +
Sbjct: 375 MAAAEIIFENMARR 388



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 140/275 (50%), Gaps = 13/275 (4%)

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYC----RFDCLSDANQYFDEMTEK 278
           ACAS   ++    +H  +++   GS+  V   ++ +      R D +  A + FD M + 
Sbjct: 27  ACASRANLAE---LHGRLVRAHLGSDPCVAGRLVTLLASPVSRHD-MPYARKVFDRMAQP 82

Query: 279 DLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAAL---SCGQ 334
             I WN +I GY    +  + L +F  M+    SP+ +T  ++  + A  A+    + G 
Sbjct: 83  TAIVWNCMIRGYNSCHAPMDALELFRAMRRSGVSPDNYTMAAVAQSSAAFASWKGRATGD 142

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
            VHA + R G   +L + + LI+ Y    ++ D++K+F EM +RD+V+WT M+  +   G
Sbjct: 143 AVHALVQRIGFASDLFVMSGLINFYGASKSVEDARKVFEEMHERDVVSWTLMISAFAQCG 202

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG 454
                +   DEM   G +P++I  +++L+AC     VD+GL  +  +++Y +  + +I  
Sbjct: 203 QWDNVLRSLDEMQSEGTKPNKITIISLLSACGQVRAVDKGLWVYARVDEYGIEADVDIRN 262

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
            ++ +  + G + +A++  K MP +  +S W  L+
Sbjct: 263 ALIGMYVKCGCMSDAWKTFKGMPIRNTKS-WNTLI 296



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 120/246 (48%), Gaps = 5/246 (2%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           IL  +LI  Y   G +  A  +F+ M  RD+VSWT M+ GY        A+ +F +M   
Sbjct: 360 ILQNSLINMYAKCGDMAAAEIIFENMARRDIVSWTAMVCGYVKGLQFRTAFNLFDDMKVR 419

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMD 165
           +V  +   L S+L AC  + +L     +H    ++ +   +++E++L+D+YA C CI  D
Sbjct: 420 DVMASEMALVSLLSACSQLGALDKGREIHSYIKEKSVRTDMWLESALVDMYAKCGCI--D 477

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEML-LEGVEMNPYSFSIAVRAC 224
            A  +F+ M+ K  ++W  +I G A  G G   + +F+++L L   + +  +  + + AC
Sbjct: 478 AAAEIFSRMRHKQTLAWNAMIGGLASQGQGKEAVALFEQLLKLRDPKPDAITLKVVLCAC 537

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLITW 283
              G V  G      ++  G   +      I+D+  R   L +A  +  +M  + + + W
Sbjct: 538 THVGMVDEGLHYFNLMLTLGIVPDNEHYGCIVDLLGRAGLLDEAYNFIQKMPIQPNPVIW 597

Query: 284 NTIIAG 289
            +++A 
Sbjct: 598 GSLLAA 603


>gi|296087156|emb|CBI33530.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 180/524 (34%), Positives = 300/524 (57%), Gaps = 5/524 (0%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWT-VFVE 102
           G  ++   L+  Y   G I  A  LFD MP RDVVS+  MI+     N        ++ +
Sbjct: 92  GFILIWNKLLSLYLKFGHIHHAHQLFDTMPRRDVVSFNTMISASVRNNYDALDLVGLYSK 151

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M + +V PN  T + ++ AC G+ +L    + H   ++ GL  + +V +SL+D YA   +
Sbjct: 152 MKKEDVKPNHITFAGLIGACDGLIALRLRGIFHAHTVRCGLSSNEFVGSSLVDGYAKQ-M 210

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            +++A   FN++   + VSW  +I G A + +    + +F +ML   V ++ ++ +  ++
Sbjct: 211 KLEDAIKAFNEIMELDLVSWNIMIDGCARNNSKEHAVRMFSQMLKGNVRVDGFTLTSIIK 270

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFD-CLSDANQYFDEMTEKDLI 281
            C+  G +  G   H + IK G     P+ N+++ MY + +  ++   + F  ++E ++I
Sbjct: 271 TCSKPGDLKHGMQFHGSAIKLGLAHETPIYNALITMYSKCEKGVASPVKIFGSISEPNII 330

Query: 282 TWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           +W  +I+G+ +   + E + +F +M       N F+F+SI+     LA L  G+Q+HA I
Sbjct: 331 SWTAMISGFMQNEQNEEAIGLFKEMLRLGVRENDFSFSSILPVYGNLANLEQGKQIHARI 390

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           ++     +L++ NALIDMY+KCG++ D+  +F +M   D+V+ T+M++ YG HG GKEA+
Sbjct: 391 IKSWFGLDLSVNNALIDMYSKCGSLEDAHLVFMKMGKHDVVSCTTMIMSYGQHGKGKEAL 450

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDL 459
           E+  EM   G+ PD + F+  L ACSH GLV+EG++ FK M  D+N+ P +E + CVVD+
Sbjct: 451 EILAEMKSEGLVPDGVTFLGCLYACSHGGLVEEGVRVFKIMIEDHNLKPKREHFACVVDM 510

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
           LGRAGR+ EA   I  M  + D  VW  LLGAC+ H    LG+ +A ++++L+P   G Y
Sbjct: 511 LGRAGRLNEAENFIDEMGIESDVLVWETLLGACRVHGEMVLGEKSAQKIMELQPGRHGPY 570

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVC 563
           ++L+NIYA  G WE+    R+ +   G KK+VG SW+ +    C
Sbjct: 571 VLLANIYAERGSWEDKVMVREKLVSHGLKKQVGCSWVALETMSC 614



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 129/250 (51%), Gaps = 2/250 (0%)

Query: 215 YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE 274
           + FS  ++ C   G +  G  +H  ++K      + + N +L +Y +F  +  A+Q FD 
Sbjct: 60  HQFSQILQECTDAGDLRTGMSVHTYLVKLNINGFILIWNKLLSLYLKFGHIHHAHQLFDT 119

Query: 275 MTEKDLITWNTIIAGYEKSG--SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSC 332
           M  +D++++NT+I+   ++   + + + ++SKMK E   PN  TF  +I AC  L AL  
Sbjct: 120 MPRRDVVSFNTMISASVRNNYDALDLVGLYSKMKKEDVKPNHITFAGLIGACDGLIALRL 179

Query: 333 GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA 392
               HA  VR GL  N  + ++L+D YAK   + D+ K F+E+ + DLV+W  M+ G   
Sbjct: 180 RGIFHAHTVRCGLSSNEFVGSSLVDGYAKQMKLEDAIKAFNEIMELDLVSWNIMIDGCAR 239

Query: 393 HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEI 452
           +   + A+ +F +M+K  VR D     +++  CS  G +  G+++  S     +     I
Sbjct: 240 NNSKEHAVRMFSQMLKGNVRVDGFTLTSIIKTCSKPGDLKHGMQFHGSAIKLGLAHETPI 299

Query: 453 YGCVVDLLGR 462
           Y  ++ +  +
Sbjct: 300 YNALITMYSK 309


>gi|242096002|ref|XP_002438491.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
 gi|241916714|gb|EER89858.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
          Length = 794

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 197/578 (34%), Positives = 317/578 (54%), Gaps = 34/578 (5%)

Query: 52  LIKSYFDEGLIEEARTLF-----DEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           L+  Y   GL+++A+TLF      ++P   VV+W  M++         +A  V  +MV  
Sbjct: 204 LLSMYARLGLVDDAQTLFGSVGATDVPGGGVVTWNTMVSLLVQSGRCGEAIEVLYDMVAR 263

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG-LEGSIYVENSLMDVYATCCISMD 165
            V P+  T +S L AC  ++ LS    +H   +K+  L  + +V ++L+D+YA+    + 
Sbjct: 264 GVRPDGVTFASALPACSQLEMLSLGREMHAYVLKDADLAANSFVASALVDMYASH-ERVG 322

Query: 166 NARLVFNDMKWKNDVS---WTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAV 221
            ARLVF DM    +     W  +I GYA +G     L +F  M  E GV  +  + +  +
Sbjct: 323 AARLVF-DMVPAGERQLGLWNAMICGYAQAGLDEDALELFARMETEAGVVPSETTIAGVL 381

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
            +CA +   +  + +H  V+K G   N  V N+++D+Y R   +  A   F  +  +D++
Sbjct: 382 PSCARSETFAGKEAVHGYVVKRGMADNPFVQNALMDLYARLGDMDAARWIFATIEPRDVV 441

Query: 282 TWNTIIAGYEKSGS-SECLNMFSKMKSE-RFS-----------------PNCFTFTSIIA 322
           +WNT+I G    G   +   +  +M+ + RF+                 PN  T  +++ 
Sbjct: 442 SWNTLITGCVVQGHIRDAFQLVREMQQQGRFTDAATEDGIAGADEEPVVPNNITLMTLLP 501

Query: 323 ACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVT 382
            CA LAA + G+++H   VR  LD ++A+ +AL+DMYAKCG ++ S+ +F  +  R+++T
Sbjct: 502 GCAMLAAPARGKEIHGYAVRHALDSDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNVIT 561

Query: 383 WTSMMIGYGAHGHGKEAIELFDEMVKSG-VRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441
           W  +++ YG HG G EAI LFD MV S   +P+ + F+A L ACSH+G+VD GL+ F+SM
Sbjct: 562 WNVLIMAYGMHGLGDEAIALFDRMVASDEAKPNEVTFIAALAACSHSGMVDRGLEMFRSM 621

Query: 442 -NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDESVWGPLLGACKEHRLPN 499
             ++ V P  +++ C VD+LGRAGR+ EAY +I SM P +   S W   LGAC+ HR   
Sbjct: 622 KRNHGVEPTPDLHACAVDILGRAGRLDEAYRIISSMEPGEQQVSAWSSFLGACRLHRNVA 681

Query: 500 LGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVR 559
           LG++AA R+ +L+P+    Y++L NIY+A G WE+ ++ R  MR  G  KE G SWIE+ 
Sbjct: 682 LGEIAAERLFELEPDEASHYVLLCNIYSAAGLWEKSSEVRSRMRQRGVSKEPGCSWIELD 741

Query: 560 DKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPD 597
             +  F+A +     +  V+  ++ L   M +  Y PD
Sbjct: 742 GVIHRFMAGESAHPESTLVHAHMDALWERMRDQGYTPD 779



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 138/530 (26%), Positives = 257/530 (48%), Gaps = 53/530 (10%)

Query: 12  TFHCHKIPPIIKQS--------LQSVKKSSIQSDPPLIPKGPSILATN-LIKSYFDEGLI 62
           T     +PP  K +        ++S+  ++++ D   +  GP+   +N L+ +Y   G +
Sbjct: 54  TLDRFALPPAAKSAAALRSLTAVRSIHGAALRHD---LLDGPTPAVSNALLTAYARCGDL 110

Query: 63  EEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN---EVNP-NAFTLSSV 118
             A  LFD MP RD V++  +IA      C  + W   ++ +R+   E +P  +FTL SV
Sbjct: 111 TAALALFDAMPSRDAVTFNSLIAAL----CLFRRWLPALDALRDMLLEGHPLTSFTLVSV 166

Query: 119 LKACKGM-KSLSNAALVHGMAIKEG-LEG-SIYVENSLMDVYATCCISMDNARLVF---- 171
           L AC  + + L      H  A+K G L+G   +  N+L+ +YA   + +D+A+ +F    
Sbjct: 167 LLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGL-VDDAQTLFGSVG 225

Query: 172 -NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
             D+     V+W T+++    SG     + V  +M+  GV  +  +F+ A+ AC+    +
Sbjct: 226 ATDVPGGGVVTWNTMVSLLVQSGRCGEAIEVLYDMVARGVRPDGVTFASALPACSQLEML 285

Query: 231 SFGKLIHAAVIKHG-FGSNLPVMNSILDMYCRFDCLSDANQYFDEMT--EKDLITWNTII 287
           S G+ +HA V+K     +N  V ++++DMY   + +  A   FD +   E+ L  WN +I
Sbjct: 286 SLGREMHAYVLKDADLAANSFVASALVDMYASHERVGAARLVFDMVPAGERQLGLWNAMI 345

Query: 288 AGYEKSGSSE-CLNMFSKMKSER-FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
            GY ++G  E  L +F++M++E    P+  T   ++ +CA     +  + VH  +V+RG+
Sbjct: 346 CGYAQAGLDEDALELFARMETEAGVVPSETTIAGVLPSCARSETFAGKEAVHGYVVKRGM 405

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             N  + NAL+D+YA+ G++  ++ IF+ +  RD+V+W +++ G    GH ++A +L  E
Sbjct: 406 ADNPFVQNALMDLYARLGDMDAARWIFATIEPRDVVSWNTLITGCVVQGHIRDAFQLVRE 465

Query: 406 MVKSG------------------VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN 447
           M + G                  V P+ I  M +L  C+       G +       + ++
Sbjct: 466 MQQQGRFTDAATEDGIAGADEEPVVPNNITLMTLLPGCAMLAAPARGKEIHGYAVRHALD 525

Query: 448 PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
            +  +   +VD+  + G +  +  +   +P + +   W  L+ A   H L
Sbjct: 526 SDVAVGSALVDMYAKCGCLALSRAVFDRLP-RRNVITWNVLIMAYGMHGL 574


>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
          Length = 686

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 197/582 (33%), Positives = 317/582 (54%), Gaps = 24/582 (4%)

Query: 22  IKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWT 81
           + Q    +  +  Q +  + PK  +I AT    +Y        AR LFD++P+ ++  W 
Sbjct: 117 VHQIQAQIIANGFQYNEYITPKLVTICATLKRMTY--------ARQLFDQIPDPNIALWN 168

Query: 82  VMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKE 141
            M  GY     + +   +F +M   ++ PN FT   VLK+C  + +L     VH   IK 
Sbjct: 169 SMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKC 228

Query: 142 GLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGV 201
           G  G+ +V  +L+D+Y+    ++ +A  +F +M  +N V+WT++I GY  S +    L  
Sbjct: 229 GFRGNPFVGTTLIDMYSAGG-TVGDAYKIFCEMFERNVVAWTSMINGYILSAD----LVS 283

Query: 202 FKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVM--NSILDMY 259
            + +     E +   ++I V     +G++  G ++ A  +      N  VM  N++L  Y
Sbjct: 284 ARRLFDLAPERDVVLWNIMV-----SGYIEGGDMVEARKLFXEM-PNRDVMFWNTVLKGY 337

Query: 260 CRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSER-FSPNCFTF 317
                +      F+EM E+++ +WN +I GY  +G   E L  F +M SE    PN  T 
Sbjct: 338 ATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATL 397

Query: 318 TSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD 377
            ++++ACA L AL  G+ VH      GL GN+ + NAL+DMYAKCG I ++  +F  M  
Sbjct: 398 VTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDT 457

Query: 378 RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY 437
           +DL++W +++ G   H  G +A+ LF +M  +G +PD I F+ +L AC+H GLV++G  Y
Sbjct: 458 KDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAY 517

Query: 438 FKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR 496
           F+SM +DY + P  E YGC+VD+L RAGR+++A   ++ MP + D  +W  LLGAC+ ++
Sbjct: 518 FQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAXAFVRKMPVEADGVIWAGLLGACRIYK 577

Query: 497 LPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWI 556
              L +LA  R+++L+P     Y++LSNIY   G+WE+ A+ +  MR  G KK  G S I
Sbjct: 578 NVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLI 637

Query: 557 EVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDI 598
           EV D V  F + D+     + +YGVL  L++ +    Y PD+
Sbjct: 638 EVNDAVVEFYSLDERHPQIEEIYGVLRGLVKVLRSFGYVPDL 679


>gi|449443642|ref|XP_004139586.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449492832|ref|XP_004159115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 663

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 186/581 (32%), Positives = 318/581 (54%), Gaps = 35/581 (6%)

Query: 45  PSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           PS+ + N +I  Y     +  A   F +MPERD VSW  +I+ ++    H Q+   FVEM
Sbjct: 57  PSLFSWNCMIYGYSKLHEMGRAIDTFRQMPERDSVSWNTIISAFSHHGLHIQSLGTFVEM 116

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
                 PN+ T +SVL AC  +        +H   ++      + V N L+D+YA C + 
Sbjct: 117 WIQGCQPNSMTYASVLSACANIYDFQWGKHLHARIVRVEPFLDVLVGNGLVDMYAKCGL- 175

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +D ++ VFN ++  N V+WT+LI+G AH G+      +F +M  + V M+ +  +  +  
Sbjct: 176 IDASKRVFNTLREHNVVTWTSLISGIAHFGSQEEVYDIFYQMRKDCVIMDNFILATILGV 235

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR----------FDCLS------- 266
           C     +S G+ +H   +K G  S++PV N+ L MY +          F+ ++       
Sbjct: 236 CEGETNISIGEQLHGFTVKTGMNSSVPVGNATLSMYAKCGDFEKASLAFETMAAHDVISW 295

Query: 267 --------------DANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFS 311
                          A  YF+ M E+++I+WN ++  Y + S   E L ++  M  +   
Sbjct: 296 TTMITSFSHSGNVERARDYFNRMPERNVISWNAMLGAYCQNSFWEEGLKLYILMLRQEVR 355

Query: 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKI 371
           P+  TF ++I AC+ LA    G Q+ +  V+ GL  ++++ N+ I +Y++CG I ++Q +
Sbjct: 356 PDWITFVTMIGACSELAISKLGTQILSQAVKVGLGSDVSVVNSAITLYSRCGRIEEAQNL 415

Query: 372 FSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLV 431
           F  + +++L++W S+M GY  +G G + IE+F  M+ +G +PD I ++A+L+ CSH+GLV
Sbjct: 416 FDSIQEKNLISWNSIMGGYAQNGEGMKVIEIFQNMLMAGCKPDHITYIAILSGCSHSGLV 475

Query: 432 DEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490
            E   +F SM  D+ ++   E + C+VDL GRAG +K A ++I  MPFKP+ S+WG LL 
Sbjct: 476 KEAKYHFNSMTKDFGISVTLEHFVCMVDLFGRAGLLKLALDMIDQMPFKPNASIWGALLS 535

Query: 491 ACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKE 550
           AC+ H    + +LA   +L+L      +YI+L+N Y++ G+ E  ++ R++M+    +K+
Sbjct: 536 ACRIHHDTEMAELAMKNLLELNTENFESYILLANTYSSFGRLECVSEVRQVMKEKRVQKD 595

Query: 551 VGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNE 591
            G SWIEV ++V  F AND      + +Y  LE +++ + +
Sbjct: 596 PGCSWIEVCNRVHVFTANDTSHPQVKDIYKALEDIVKKIKD 636



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 99/390 (25%), Positives = 170/390 (43%), Gaps = 50/390 (12%)

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQY----------- 271
           AC+S G++     +H    K+GFG+N  + NSI+DMY + D +  A Q            
Sbjct: 2   ACSSVGYIRIAHQLHGLSEKYGFGNNKVIQNSIIDMYIKCDAIYAAEQVFLRIEKPSLFS 61

Query: 272 --------------------FDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERF 310
                               F +M E+D ++WNTII+ +   G   + L  F +M  +  
Sbjct: 62  WNCMIYGYSKLHEMGRAIDTFRQMPERDSVSWNTIISAFSHHGLHIQSLGTFVEMWIQGC 121

Query: 311 SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQK 370
            PN  T+ S+++ACA +     G+ +HA IVR     ++ + N L+DMYAKCG I  S++
Sbjct: 122 QPNSMTYASVLSACANIYDFQWGKHLHARIVRVEPFLDVLVGNGLVDMYAKCGLIDASKR 181

Query: 371 IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           +F+ + + ++VTWTS++ G    G  +E  ++F +M K  V  D  +   +L  C     
Sbjct: 182 VFNTLREHNVVTWTSLISGIAHFGSQEEVYDIFYQMRKDCVIMDNFILATILGVCEGETN 241

Query: 431 VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490
           +  G +         +N +  +    + +  + G  ++A    ++M    D   W  ++ 
Sbjct: 242 ISIGEQLHGFTVKTGMNSSVPVGNATLSMYAKCGDFEKASLAFETMA-AHDVISWTTMIT 300

Query: 491 ACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN----IYAAEGKWEEFAKFRKIMRGMG 546
           +       + G +   R  D    M    +I  N     Y     WEE  K   +M    
Sbjct: 301 S-----FSHSGNVE--RARDYFNRMPERNVISWNAMLGAYCQNSFWEEGLKLYILML--- 350

Query: 547 SKKEVGMSWIEVRDKV--CGFIANDKMGSH 574
            ++EV   WI     +  C  +A  K+G+ 
Sbjct: 351 -RQEVRPDWITFVTMIGACSELAISKLGTQ 379


>gi|115473985|ref|NP_001060591.1| Os07g0670000 [Oryza sativa Japonica Group]
 gi|22831115|dbj|BAC15976.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
 gi|50510078|dbj|BAD30730.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
 gi|113612127|dbj|BAF22505.1| Os07g0670000 [Oryza sativa Japonica Group]
 gi|125559550|gb|EAZ05086.1| hypothetical protein OsI_27276 [Oryza sativa Indica Group]
          Length = 726

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 199/544 (36%), Positives = 301/544 (55%), Gaps = 17/544 (3%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTS-FNCHNQAWTVFVEMVRN-EVN 109
           L+ +Y   G + EAR++FD+MP RD+VSW  +I G     +C  +   VF+ M+R+ +V 
Sbjct: 172 LVTAYSRGGSLGEARSVFDDMPARDLVSWNALICGLAQDGDCPAEVIGVFLRMLRDGDVQ 231

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P+  ++ SV+ AC G   L     VHG A+K G+EG + + N L+ +Y  C  +  +AR 
Sbjct: 232 PDRISVCSVIPACGGEGKLELGRQVHGFAVKLGVEGYVSIGNVLVAMYYKCG-APGSARR 290

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           +F+ M  ++ VSWTT I     S +G   L +F  M  +GV  N  +F   + A  +   
Sbjct: 291 LFDAMSERDVVSWTTAI-----SMDGEDALTLFNGMRRDGVPPNEVTFVALMSALPADCP 345

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
               +++HAA +K          NS++ MY +   + DA   FD M  +++I WN +I+G
Sbjct: 346 ARGAQMVHAACLKAAVSGEAAASNSLITMYAKARRMDDARMVFDLMPRREIIAWNAVISG 405

Query: 290 YEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSC--GQQVHAGIVRRGLD 346
           Y ++G  ++ L +FS M +   +PN  TF S+++A   +  +S   GQ  H+  +  G  
Sbjct: 406 YAQNGRCNDALELFSSM-ARCLTPNETTFASVLSAVTAVETVSMAYGQMYHSRALSMGFG 464

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            +  +A ALIDMYAK GN+ +S+K F E   R L+ WT+++     HG     + LF +M
Sbjct: 465 DSEYVAGALIDMYAKRGNLEESRKAFHETEQRSLIAWTAIISANARHGSYGAVMSLFGDM 524

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGR 465
            +SGV PD +V +AVLTAC + G+VD G   F SM  D  V    E Y CVVD+LGRAGR
Sbjct: 525 ARSGVAPDGVVLLAVLTACRYGGMVDAGRDIFDSMAADRGVELWPEHYSCVVDMLGRAGR 584

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           + EA EL+  MP  P  S    LLGAC+ H    +G+  A  + + +P   G Y++LSNI
Sbjct: 585 LAEAEELMMRMPAGPSVSALQSLLGACRIHGDAEIGERIARILTEKEPTESGAYVLLSNI 644

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRD----KVCGFIANDKMGSHTQYVYGV 581
           YA  G W+  AK R+ MR  G KKE+G SW++        +  F ++D     T+ +Y V
Sbjct: 645 YADVGDWDGVAKVRRKMRDRGVKKEIGFSWVDAGAGEALHLHKFSSDDTTHPRTEEIYAV 704

Query: 582 LEML 585
            ++L
Sbjct: 705 ADVL 708



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 127/280 (45%), Gaps = 9/280 (3%)

Query: 200 GVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMY 259
           G+    L     +NP +FS AVRA       +    +HA  +  G      V NS+   Y
Sbjct: 22  GIPHPSLARHRRVNPIAFSAAVRASDPASLPA----LHAVAVTTGLHGFAAVTNSLAARY 77

Query: 260 CRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKM-KSERFSPNCFTFT 318
            +      A   F     +D+ ++NTI++ +     +E L+  S M +S    P+  T T
Sbjct: 78  AKTGSFPSAVGVFAAARARDVSSYNTILSAFPDP--AEALDFASWMLRSGAVRPDAVTCT 135

Query: 319 SIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR 378
             ++  A        +Q+HA   R GL  ++ + NAL+  Y++ G++ +++ +F +M  R
Sbjct: 136 VALSLAAGRGEGFLVRQLHALAWRSGLAADVFVGNALVTAYSRGGSLGEARSVFDDMPAR 195

Query: 379 DLVTWTSMMIGYGAHGH-GKEAIELFDEMVKSG-VRPDRIVFMAVLTACSHAGLVDEGLK 436
           DLV+W +++ G    G    E I +F  M++ G V+PDRI   +V+ AC   G ++ G +
Sbjct: 196 DLVSWNALICGLAQDGDCPAEVIGVFLRMLRDGDVQPDRISVCSVIPACGGEGKLELGRQ 255

Query: 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
                    V     I   +V +  + G    A  L  +M
Sbjct: 256 VHGFAVKLGVEGYVSIGNVLVAMYYKCGAPGSARRLFDAM 295



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 130/270 (48%), Gaps = 6/270 (2%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G +  + +LI  Y     +++AR +FD MP R++++W  +I+GY      N A  +F  M
Sbjct: 363 GEAAASNSLITMYAKARRMDDARMVFDLMPRREIIAWNAVISGYAQNGRCNDALELFSSM 422

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNA--ALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
            R  + PN  T +SVL A   ++++S A   + H  A+  G   S YV  +L+D+YA   
Sbjct: 423 ARC-LTPNETTFASVLSAVTAVETVSMAYGQMYHSRALSMGFGDSEYVAGALIDMYAKRG 481

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
            +++ +R  F++ + ++ ++WT +I+  A  G+    + +F +M   GV  +       +
Sbjct: 482 -NLEESRKAFHETEQRSLIAWTAIISANARHGSYGAVMSLFGDMARSGVAPDGVVLLAVL 540

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNS-ILDMYCRFDCLSDANQYFDEMTEKDL 280
            AC   G V  G+ I  ++         P   S ++DM  R   L++A +    M     
Sbjct: 541 TACRYGGMVDAGRDIFDSMAADRGVELWPEHYSCVVDMLGRAGRLAEAEELMMRMPAGPS 600

Query: 281 IT-WNTIIAGYEKSGSSECLNMFSKMKSER 309
           ++   +++      G +E     +++ +E+
Sbjct: 601 VSALQSLLGACRIHGDAEIGERIARILTEK 630


>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 187/568 (32%), Positives = 304/568 (53%), Gaps = 5/568 (0%)

Query: 45  PSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
           PS L+ +L+  Y    L+  A+ +      R VV+WT +I+G         A   F  M 
Sbjct: 41  PSFLSNHLVNMYSKLDLLNSAQHVLSLTHLRTVVTWTSLISGCVHNRRFLPALLHFTNMR 100

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
           R+ V PN FT   V KA   ++       +HG+A+K G+   ++V  S  D+Y       
Sbjct: 101 RDNVQPNDFTFPCVFKASAFVQIPMTGKQIHGLALKGGMIYDVFVGCSCFDMYCKTGFRG 160

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           D   + F++M  +N  +W   I+           +  FKE L    E N  +F   + AC
Sbjct: 161 DACNM-FDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFLCVHGEPNSITFCAFLNAC 219

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLITW 283
                ++ G+ +HA +++ G+  ++ V N ++D Y +   +  A   F+ +   K++++W
Sbjct: 220 VDMVRLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSW 279

Query: 284 NTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +++A   ++   E   M      +   P  F  +S+++ACA L  L  G+ VHA  V+ 
Sbjct: 280 CSMLAALVQNHEEERACMVFLQARKEVEPTDFMISSVLSACAELGGLELGRSVHALAVKA 339

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
            ++ N+ + +AL+DMY KCG+I +++++FSE+ +R+LVTW +M+ GY   G    A+ LF
Sbjct: 340 CVEDNIFVGSALVDMYGKCGSIENAEQVFSELPERNLVTWNAMIGGYAHQGDIDMALRLF 399

Query: 404 DEMV--KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLL 460
           +EM     G+RP  +  +++L+ CS  G V+ G++ F+SM  +Y + P  E + CVVDLL
Sbjct: 400 EEMTLGSHGIRPSYVTLISILSVCSRVGAVERGIQIFESMRLNYGIEPGAEHFACVVDLL 459

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520
           GR+G V  AYE I++M  +P  SVWG LLGAC+ H    LGK+AA ++ +L     G ++
Sbjct: 460 GRSGLVDRAYEFIQNMAIQPTISVWGALLGACRMHGKTELGKIAAEKLFELDHVDSGNHV 519

Query: 521 ILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYG 580
           +LSN+ A+ G+WEE    RK M+ +G KK VG SWI V++++  F A D        +  
Sbjct: 520 VLSNMLASAGRWEEATVVRKEMKDIGIKKNVGYSWIAVKNRIHVFQAKDSSHDRNSEIQA 579

Query: 581 VLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           +L  L   M E  Y PD +  + DLE E
Sbjct: 580 MLGKLRGGMKEAGYVPDTNLSLFDLEDE 607


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 181/500 (36%), Positives = 289/500 (57%), Gaps = 8/500 (1%)

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           ++ T S ++K C   +++    L+       G    +++ N L+++Y    + +++A  +
Sbjct: 60  DSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNL-LNDAHQL 118

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F+ M  +N +SWTT+I+ Y+        L +   ML + V  N Y++S  +R+C     V
Sbjct: 119 FDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV 178

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
              +++H  +IK G  S++ V ++++D++ +     DA   FDEM   D I WN+II G+
Sbjct: 179 ---RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGF 235

Query: 291 EKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
            ++  S+  L +F +MK   F     T TS++ AC  LA L  G Q H  IV+   D +L
Sbjct: 236 AQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDL 293

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
            L NAL+DMY KCG++ D+ ++F++M +RD++TW++M+ G   +G+ +EA++LF+ M  S
Sbjct: 294 ILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSS 353

Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKE 468
           G +P+ I  + VL ACSHAGL+++G  YF+SM   Y ++P +E YGC++DLLG+AG++ +
Sbjct: 354 GTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDD 413

Query: 469 AYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA 528
           A +L+  M  +PD   W  LLGAC+  R   L + AA +V+ L P   GTY +LSNIYA 
Sbjct: 414 AVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYAN 473

Query: 529 EGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRH 588
             KW+   + R  MR  G KKE G SWIEV  ++  FI  D        V   L  LI  
Sbjct: 474 SQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHR 533

Query: 589 MNETAYEPDIDCLIHDLEGE 608
           +    Y P+ + ++ DLEGE
Sbjct: 534 LTGIGYVPETNFVLQDLEGE 553



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 115/343 (33%), Positives = 191/343 (55%), Gaps = 9/343 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L   LI  Y    L+ +A  LFD+MP+R+V+SWT MI+ Y+    H +A  + V M+R+ 
Sbjct: 98  LVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDN 157

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V PN +T SSVL++C GM   S+  ++H   IKEGLE  ++V ++L+DV+A      ++A
Sbjct: 158 VRPNVYTYSSVLRSCNGM---SDVRMLHCGIIKEGLESDVFVRSALIDVFAKLG-EPEDA 213

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             VF++M   + + W ++I G+A +      L +FK M   G      + +  +RAC   
Sbjct: 214 LSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGL 273

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  G   H  ++K  +  +L + N+++DMYC+   L DA + F++M E+D+ITW+T+I
Sbjct: 274 ALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMI 331

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR-RGL 345
           +G  ++G S E L +F +MKS    PN  T   ++ AC+    L  G      + +  G+
Sbjct: 332 SGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGI 391

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMM 387
           D        +ID+  K G + D+ K+ +EM  + D VTW +++
Sbjct: 392 DPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLL 434



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 173/339 (51%), Gaps = 12/339 (3%)

Query: 209 GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDA 268
           G+  +  ++S  ++ C S   V  G LI   +  +G    + ++N +++MY +F+ L+DA
Sbjct: 56  GLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDA 115

Query: 269 NQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATL 327
           +Q FD+M ++++I+W T+I+ Y K     + L +   M  +   PN +T++S++ +C  +
Sbjct: 116 HQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGM 175

Query: 328 AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMM 387
           + +   + +H GI++ GL+ ++ + +ALID++AK G   D+  +F EM   D + W S++
Sbjct: 176 SDV---RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSII 232

Query: 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN 447
            G+  +     A+ELF  M ++G   ++    +VL AC+   L++ G++    +  Y  +
Sbjct: 233 GGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKY--D 290

Query: 448 PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKE--HRLPNLGKLAA 505
            +  +   +VD+  + G +++A  +   M  + D   W  ++    +  +    L     
Sbjct: 291 QDLILNNALVDMYCKCGSLEDALRVFNQMK-ERDVITWSTMISGLAQNGYSQEALKLFER 349

Query: 506 LRVLDLKPN---MMGTYIILSNIYAAEGKWEEFAKFRKI 541
           ++    KPN   ++G     S+    E  W  F   +K+
Sbjct: 350 MKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKL 388



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 71/156 (45%), Gaps = 31/156 (19%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           IL   L+  Y   G +E+A  +F++M ERDV++W+ MI+G        +A  +F  M  +
Sbjct: 294 ILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSS 353

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT------- 159
              PN  T+  VL AC      S+A L         LE   Y   S+  +Y         
Sbjct: 354 GTKPNYITIVGVLFAC------SHAGL---------LEDGWYYFRSMKKLYGIDPVREHY 398

Query: 160 -CCI-------SMDNARLVFNDMKWKND-VSWTTLI 186
            C I        +D+A  + N+M+ + D V+W TL+
Sbjct: 399 GCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLL 434


>gi|108706064|gb|ABF93859.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125584837|gb|EAZ25501.1| hypothetical protein OsJ_09324 [Oryza sativa Japonica Group]
          Length = 781

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 183/545 (33%), Positives = 307/545 (56%), Gaps = 4/545 (0%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN-EVN 109
           +L+  Y   GL+E+A  +FD MP RD+V+W  M+ GY S    + A   F EM    EV 
Sbjct: 147 SLVAFYAKLGLVEDAERVFDGMPVRDIVTWNTMVDGYVSNGLGSLALACFQEMHDALEVQ 206

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
            ++  + + L AC    S      +HG  I+ GLE  I V  SL+D+Y  C   +  AR 
Sbjct: 207 HDSVGIIAALAACCLEVSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCG-EVAYARS 265

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           VF  M  +  V+W  +I GYA +         F +M  EG+++   +    + ACA T  
Sbjct: 266 VFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTES 325

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
             +G+ +H  V++  F  ++ +  ++L+MY +   +  + + F ++  K L++WN +IA 
Sbjct: 326 SLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAA 385

Query: 290 Y-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           Y  K   +E + +F ++ ++   P+ FT ++++ A   L +L   +Q+H+ I+  G   N
Sbjct: 386 YMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAEN 445

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
             + NA++ MYA+ G++  S++IF +M  +D+++W +M++GY  HG GK A+E+FDEM  
Sbjct: 446 TLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKY 505

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVK 467
           +G++P+   F++VLTACS +GLVDEG  +F  M  +Y + P  E YGC+ DLLGR G ++
Sbjct: 506 NGLQPNESTFVSVLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLR 565

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527
           E  + I+SMP  P   VWG LL A +     ++ + AA R+  L+ +  G YI+LS++YA
Sbjct: 566 EVLQFIESMPIDPTSRVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCYIVLSSMYA 625

Query: 528 AEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIR 587
             G+WE+  + R +M+  G ++   +S +E+    C F   D   S ++ ++ V  +L R
Sbjct: 626 DAGRWEDVERVRLLMKEKGLRRTEPISLVELHSTACSFANGDMSHSQSRTIHEVSNILSR 685

Query: 588 HMNET 592
            + ET
Sbjct: 686 KIEET 690



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 141/468 (30%), Positives = 224/468 (47%), Gaps = 16/468 (3%)

Query: 29  VKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYT 88
           +  +S +  P L PK  S  + +L+ S   EG ++EA      +   D     VMI G+ 
Sbjct: 26  IPATSKEPPPRLPPKRGS--SKSLVVSLAAEGRMDEAVEALAAVRGPDAFLHNVMIRGFA 83

Query: 89  SFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIY 148
                  A   +  M+ +   P+ FT   V+K C  +  L      HGM IK GLE  +Y
Sbjct: 84  DAGLPAGALAAYRGMLEDGARPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDVY 143

Query: 149 VENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE 208
             NSL+  YA   +  D  R VF+ M  ++ V+W T++ GY  +G G   L  F+EM  +
Sbjct: 144 TCNSLVAFYAKLGLVEDAER-VFDGMPVRDIVTWNTMVDGYVSNGLGSLALACFQEM-HD 201

Query: 209 GVEMNPYSFSI--AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLS 266
            +E+   S  I  A+ AC        GK IH  VI+HG   ++ V  S+LDMYC+   ++
Sbjct: 202 ALEVQHDSVGIIAALAACCLEVSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVA 261

Query: 267 DANQYFDEMTEKDLITWNTIIAGYE-KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACA 325
            A   F  M  + ++TWN +I GY       E  + F +M++E       T  +++AACA
Sbjct: 262 YARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACA 321

Query: 326 TLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTS 385
              +   G+ VH  +VRR    ++ L  AL++MY K G +  S+KIF +++++ LV+W +
Sbjct: 322 QTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNN 381

Query: 386 MMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYN 445
           M+  Y       EAI LF E++   + PD      V+ A    G     L++ + ++ Y 
Sbjct: 382 MIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLG----SLRHCRQIHSYI 437

Query: 446 VN----PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           +      N  I   V+ +  R+G V  + E+   M  K D   W  ++
Sbjct: 438 IGLGYAENTLIMNAVLHMYARSGDVVASREIFDKMVSK-DVISWNTMI 484



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 169/334 (50%), Gaps = 11/334 (3%)

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           MD A      ++  +      +I G+A +G   G L  ++ ML +G   + ++F + V+ 
Sbjct: 57  MDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYRGMLEDGARPDRFTFPVVVKC 116

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           CA  G +  G+  H  VIK G   ++   NS++  Y +   + DA + FD M  +D++TW
Sbjct: 117 CARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTW 176

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSE-RFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           NT++ GY  +G  S  L  F +M        +     + +AAC    +   G+++H  ++
Sbjct: 177 NTMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAALAACCLEVSSMQGKEIHGYVI 236

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           R GL+ ++ +  +L+DMY KCG ++ ++ +F+ M  R +VTW  M+ GY  +    EA +
Sbjct: 237 RHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFD 296

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN----PNKEIYGCVV 457
            F +M   G++ + +  + +L AC+      E   Y +S++ Y V     P+  +   ++
Sbjct: 297 CFMQMRAEGLQVEVVTAINLLAACAQT----ESSLYGRSVHGYVVRRQFLPHVVLETALL 352

Query: 458 DLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
           ++ G+ G+V+ + ++   +  K   S W  ++ A
Sbjct: 353 EMYGKVGKVESSEKIFGKIANKTLVS-WNNMIAA 385



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 141/280 (50%), Gaps = 2/280 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + T+L+  Y   G +  AR++F  MP R VV+W  MI GY      ++A+  F++M    
Sbjct: 246 VGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEG 305

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           +     T  ++L AC   +S      VHG  ++      + +E +L+++Y      ++++
Sbjct: 306 LQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVG-KVESS 364

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             +F  +  K  VSW  +I  Y +       + +F E+L + +  + ++ S  V A    
Sbjct: 365 EKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLL 424

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
           G +   + IH+ +I  G+  N  +MN++L MY R   +  + + FD+M  KD+I+WNT+I
Sbjct: 425 GSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMI 484

Query: 288 AGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACAT 326
            GY   G  +  L MF +MK     PN  TF S++ AC+ 
Sbjct: 485 MGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACSV 524



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 118/234 (50%), Gaps = 10/234 (4%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +L T L++ Y   G +E +  +F ++  + +VSW  MIA Y     + +A T+F+E++  
Sbjct: 346 VLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQ 405

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + P+ FT+S+V+ A   + SL +   +H   I  G   +  + N+++ +YA     +  
Sbjct: 406 PLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSG-DVVA 464

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           +R +F+ M  K+ +SW T+I GYA  G G   L +F EM   G++ N  +F   + AC+ 
Sbjct: 465 SREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACSV 524

Query: 227 T-----GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM 275
           +     GW+ F  ++     ++G    +     + D+  R   L +  Q+ + M
Sbjct: 525 SGLVDEGWMHFNLMLQ----EYGMIPQIEHYGCMTDLLGREGDLREVLQFIESM 574



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 40/77 (51%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           +++   ++  Y   G +  +R +FD+M  +DV+SW  MI GY        A  +F EM  
Sbjct: 446 TLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKY 505

Query: 106 NEVNPNAFTLSSVLKAC 122
           N + PN  T  SVL AC
Sbjct: 506 NGLQPNESTFVSVLTAC 522


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 198/565 (35%), Positives = 314/565 (55%), Gaps = 9/565 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +  +LI  Y   GL+EEA+ +F +M  RD+VSW  ++AG        +A  +F +   + 
Sbjct: 238 VCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASM 297

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
              +  T S+V+K C  +K L+ A  +H   +K G      V  ++MD Y+ C   +D+A
Sbjct: 298 AKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCG-ELDDA 356

Query: 168 RLVFNDMKW-KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
             +F  M   +N VSWT +I G   + +      +F  M  + V+ N +++S  + A   
Sbjct: 357 FNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASIP 416

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
                    IHA +IK  +     V  ++L  Y +     +A   F  +  KD++ W+ +
Sbjct: 417 I----LLPQIHAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAM 472

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACAT-LAALSCGQQVHAGIVRRG 344
           ++ Y ++G  +   N+F KM  +   PN FT +S I ACA+  A +  G+Q HA  ++  
Sbjct: 473 LSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYR 532

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
               + + +AL+ MYA+ G+I  ++ +F   +DRDLV+W SM+ GY  HG+ KEA++ F 
Sbjct: 533 YQDAICVGSALVTMYARKGSIDSARIVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFR 592

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRA 463
           +M   G+  D   F+AV+  C+HAGLV EG +YF SM  D+N++P  E Y C+VDL  RA
Sbjct: 593 QMETVGIEMDGATFLAVIVGCTHAGLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRA 652

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G++ E   LI+ MPF     VW  LLGAC+ H+   LGKLAA ++L L+P+   TY++LS
Sbjct: 653 GKLDETMNLIEGMPFPAGAMVWRTLLGACRVHKNVELGKLAAQKLLLLEPDDSATYVLLS 712

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           NIYAA G+W+E  + RK+M     KKE G SWI++++KV  FIA DK    ++ +Y  L+
Sbjct: 713 NIYAAAGRWKERDEVRKLMDSKKVKKEAGCSWIQIKNKVHSFIACDKSHPLSEQIYAKLK 772

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGE 608
            +   + +  Y P+   ++HD+  E
Sbjct: 773 AMTTRLKQEGYCPNTSVVLHDIAEE 797



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 116/451 (25%), Positives = 224/451 (49%), Gaps = 9/451 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + T L+  Y   G +E+ R +F+ MP+R+VV+WT ++ GY      +    +F  M    
Sbjct: 137 VGTALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEG 196

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V PN FT +SVL A     ++     VH  ++K G   +++V NSL+++Y+ C + ++ A
Sbjct: 197 VWPNPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGL-VEEA 255

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           + VF  M+ ++ VSW TL+ G   + +    L +F +      +++  ++S  ++ CA+ 
Sbjct: 256 KAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANL 315

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLITWNTI 286
             ++  + +H+ V+KHGF S+  VM +I+D Y +   L DA   F  M   +++++W  +
Sbjct: 316 KQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAM 375

Query: 287 IAG-YEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I G  + +       +FS+M+ +   PN FT+++++ A   +       Q+HA I++   
Sbjct: 376 IGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPILL----PQIHAQIIKTNY 431

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
               ++  AL+  Y+K GN  ++  IF  +  +D+V W++M+  Y   G    A  +F +
Sbjct: 432 QHAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIK 491

Query: 406 MVKSGVRPDRIVFMAVLTAC-SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
           M   G++P+     + + AC S    +D+G ++      Y       +   +V +  R G
Sbjct: 492 MSMQGMKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYARKG 551

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            +  A  ++       D   W  ++    +H
Sbjct: 552 SIDSA-RIVFERQTDRDLVSWNSMISGYAQH 581



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 190/368 (51%), Gaps = 10/368 (2%)

Query: 65  ARTLFDEMPERDVVSWT----VMIAGY-TSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119
           AR   D MP RD  + +    V I  Y        +A   FV++ R      A  +S VL
Sbjct: 48  ARQALDGMPSRDAAAGSSSNPVAIVDYGRRGKGRGEALDHFVDVHRCGRVQGA-AVSRVL 106

Query: 120 KACKGMKSLSNAALVHGMAIKEGLE-GSIYVENSLMDVYATCCISMDNARLVFNDMKWKN 178
           K C  +    +   +H + +K G +   + V  +L+D+Y  C   +++ R+VF  M  +N
Sbjct: 107 KVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCG-GVEDGRVVFEGMPKRN 165

Query: 179 DVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHA 238
            V+WT+L+TGY         + +F  M  EGV  NP++F+  + A AS G V  G+ +HA
Sbjct: 166 VVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRVHA 225

Query: 239 AVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG-YEKSGSSE 297
             +K G  S + V NS+++MY +   + +A   F +M  +D+++WNT++AG        E
Sbjct: 226 QSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLE 285

Query: 298 CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALID 357
            L +F   ++     +  T++++I  CA L  L+  +Q+H+ +++ G   +  +  A++D
Sbjct: 286 ALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMD 345

Query: 358 MYAKCGNISDSQKIFSEM-SDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI 416
            Y+KCG + D+  IF  M   +++V+WT+M+ G   +     A  LF  M +  V+P+  
Sbjct: 346 AYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEF 405

Query: 417 VFMAVLTA 424
            +  VLTA
Sbjct: 406 TYSTVLTA 413


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 187/501 (37%), Positives = 299/501 (59%), Gaps = 5/501 (0%)

Query: 109 NPNAFT-LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           +PN++   +SVL++C   +SL     +HG  +  GL     +   L+D+YA C + + +A
Sbjct: 58  SPNSYHHYTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGL-VGHA 116

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R +F+ M  +N   W  LI  YA  G     + +++ M+  GVE + +++ +A++ACA+ 
Sbjct: 117 RRLFDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAAL 176

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  G+ +H  V+   +G ++ V   ++DMY +  C+ DA   FD +  +D + WN++I
Sbjct: 177 LDLETGREVHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMI 236

Query: 288 AGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           A Y ++G   E L++   M +    P   T  S I+A A  AAL  G+++H    RRG D
Sbjct: 237 AAYGQNGRPMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFD 296

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
               L  +L+DMYAK G +  ++ +F ++  R+LV+W +M+ GYG HGH  EA++LF++M
Sbjct: 297 RQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKM 356

Query: 407 -VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAG 464
            V++ V PD I F+ VL+AC+H G+V E  ++F  M D Y++ P  + + C+VD+LG AG
Sbjct: 357 RVEAQVTPDNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAG 416

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           R +EAY+LIK MP +PD  +WG LL  CK H+   LG+LA  ++++L+P   G Y++LSN
Sbjct: 417 RFEEAYDLIKGMPMQPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVLLSN 476

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           IYA  GKWE+ A+ RK+M   G KK +G SWIE++ K  GF+  D     +  +Y  LE 
Sbjct: 477 IYAQSGKWEKAARVRKLMTNRGLKKIIGCSWIELKGKTHGFLVGDASHPRSAEIYEELER 536

Query: 585 LIRHMNETAYEPDIDCLIHDL 605
           L   M++  Y PD   + HD+
Sbjct: 537 LEGLMSDAGYMPDTMPVFHDV 557



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/386 (27%), Positives = 181/386 (46%), Gaps = 39/386 (10%)

Query: 44  GP-SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           GP ++LAT L+  Y   GL+  AR LFD MP+R+V  W V+I  Y     H  A  ++  
Sbjct: 94  GPDTVLATKLVDLYAACGLVGHARRLFDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRG 153

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-C 161
           MV   V P+ FT    LKAC  +  L     VH   +       ++V   L+D+YA C C
Sbjct: 154 MVDYGVEPDNFTYPLALKACAALLDLETGREVHERVLGTHWGEDMFVCAGLVDMYAKCGC 213

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
           +  D+AR VF+ ++ ++ V W ++I  Y  +G     L + ++M   GV     +    +
Sbjct: 214 V--DDARAVFDRIRVRDSVVWNSMIAAYGQNGRPMEALSLCRDMAANGVGPTIATLVSTI 271

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
            A A    +  G+ +H    + GF     +  S++DMY +   +  A   F+++ +++L+
Sbjct: 272 SAAADAAALPRGRELHGFGWRRGFDRQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELV 331

Query: 282 TWNTIIAGYEKSGS-SECLNMFSKMKSE-RFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           +WN +I GY   G   E L +F+KM+ E + +P+  TF  +++AC            H G
Sbjct: 332 SWNAMICGYGMHGHFDEALKLFNKMRVEAQVTPDNITFVGVLSACN-----------HGG 380

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
           +V+   +        ++D+Y+    I  + + F+ + D                GH    
Sbjct: 381 MVKEAKE----FFGLMVDVYS----IKPTVQHFTCLVD--------------VLGHAGRF 418

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTAC 425
            E +D +    ++PD  ++ A+L  C
Sbjct: 419 EEAYDLIKGMPMQPDSGIWGALLNGC 444


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 181/500 (36%), Positives = 289/500 (57%), Gaps = 8/500 (1%)

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           ++ T S ++K C   +++    L+       G    +++ N L+++Y    + +++A  +
Sbjct: 60  DSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNL-LNDAHQL 118

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F+ M  +N +SWTT+I+ Y+        L +   ML + V  N Y++S  +R+C     V
Sbjct: 119 FDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV 178

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
              +++H  +IK G  S++ V ++++D++ +     DA   FDEM   D I WN+II G+
Sbjct: 179 ---RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGF 235

Query: 291 EKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
            ++  S+  L +F +MK   F     T TS++ AC  LA L  G Q H  IV+   D +L
Sbjct: 236 AQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDL 293

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
            L NAL+DMY KCG++ D+ ++F++M +RD++TW++M+ G   +G+ +EA++LF+ M  S
Sbjct: 294 ILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSS 353

Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKE 468
           G +P+ I  + VL ACSHAGL+++G  YF+SM   Y ++P +E YGC++DLLG+AG++ +
Sbjct: 354 GTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDD 413

Query: 469 AYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA 528
           A +L+  M  +PD   W  LLGAC+  R   L + AA +V+ L P   GTY +LSNIYA 
Sbjct: 414 AVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYAN 473

Query: 529 EGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRH 588
             KW+   + R  MR  G KKE G SWIEV  ++  FI  D        V   L  LI  
Sbjct: 474 SQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHR 533

Query: 589 MNETAYEPDIDCLIHDLEGE 608
           +    Y P+ + ++ DLEGE
Sbjct: 534 LTGIGYVPETNFVLQDLEGE 553



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 115/343 (33%), Positives = 191/343 (55%), Gaps = 9/343 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L   LI  Y    L+ +A  LFD+MP+R+V+SWT MI+ Y+    H +A  + V M+R+ 
Sbjct: 98  LVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDN 157

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V PN +T SSVL++C GM   S+  ++H   IKEGLE  ++V ++L+DV+A      ++A
Sbjct: 158 VRPNVYTYSSVLRSCNGM---SDVRMLHCGIIKEGLESDVFVRSALIDVFAKLG-EPEDA 213

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             VF++M   + + W ++I G+A +      L +FK M   G      + +  +RAC   
Sbjct: 214 LSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGL 273

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  G   H  ++K  +  +L + N+++DMYC+   L DA + F++M E+D+ITW+T+I
Sbjct: 274 ALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMI 331

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR-RGL 345
           +G  ++G S E L +F +MKS    PN  T   ++ AC+    L  G      + +  G+
Sbjct: 332 SGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGI 391

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMM 387
           D        +ID+  K G + D+ K+ +EM  + D VTW +++
Sbjct: 392 DPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLL 434



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 173/339 (51%), Gaps = 12/339 (3%)

Query: 209 GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDA 268
           G+  +  ++S  ++ C S   V  G LI   +  +G    + ++N +++MY +F+ L+DA
Sbjct: 56  GLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDA 115

Query: 269 NQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATL 327
           +Q FD+M ++++I+W T+I+ Y K     + L +   M  +   PN +T++S++ +C  +
Sbjct: 116 HQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGM 175

Query: 328 AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMM 387
           + +   + +H GI++ GL+ ++ + +ALID++AK G   D+  +F EM   D + W S++
Sbjct: 176 SDV---RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSII 232

Query: 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN 447
            G+  +     A+ELF  M ++G   ++    +VL AC+   L++ G++    +  Y  +
Sbjct: 233 GGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKY--D 290

Query: 448 PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKE--HRLPNLGKLAA 505
            +  +   +VD+  + G +++A  +   M  + D   W  ++    +  +    L     
Sbjct: 291 QDLILNNALVDMYCKCGSLEDALRVFNQMK-ERDVITWSTMISGLAQNGYSQEALKLFER 349

Query: 506 LRVLDLKPN---MMGTYIILSNIYAAEGKWEEFAKFRKI 541
           ++    KPN   ++G     S+    E  W  F   +K+
Sbjct: 350 MKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKL 388



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 71/156 (45%), Gaps = 31/156 (19%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           IL   L+  Y   G +E+A  +F++M ERDV++W+ MI+G        +A  +F  M  +
Sbjct: 294 ILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSS 353

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT------- 159
              PN  T+  VL AC      S+A L         LE   Y   S+  +Y         
Sbjct: 354 GTKPNYITIVGVLFAC------SHAGL---------LEDGWYYFRSMKKLYGIDPVREHY 398

Query: 160 -CCI-------SMDNARLVFNDMKWKND-VSWTTLI 186
            C I        +D+A  + N+M+ + D V+W TL+
Sbjct: 399 GCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLL 434


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 187/566 (33%), Positives = 321/566 (56%), Gaps = 11/566 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A +LI  Y     +  AR LFDEMP RD+ SW  MI+GY       +A T+      N 
Sbjct: 187 VAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTL-----SNG 241

Query: 108 VNP-NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           +   ++ T+ S+L AC      +    +H  +IK GLE  ++V N L+D+YA     + +
Sbjct: 242 LRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFG-RLRD 300

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
            + VF+ M  ++ +SW ++I  Y  +      + +F+EM L  ++ +  +        + 
Sbjct: 301 CQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQ 360

Query: 227 TGWVSFGKLIHAAVIKHG-FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
            G +   + +    ++ G F  ++ + N+++ MY +   +  A   F+ +   D+I+WNT
Sbjct: 361 LGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNT 420

Query: 286 IIAGYEKSG-SSECLNMFSKMKSE-RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           II+GY ++G +SE + M++ M+ E   + N  T+ S++ AC+   AL  G ++H  +++ 
Sbjct: 421 IISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKN 480

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           GL  ++ +  +L DMY KCG + D+  +F ++   + V W +++  +G HGHG++A+ LF
Sbjct: 481 GLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLF 540

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGR 462
            EM+  GV+PD I F+ +L+ACSH+GLVDEG   F+ M  DY + P+ + YGC+VD+ GR
Sbjct: 541 KEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGR 600

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AG+++ A + IKSM  +PD S+WG LL AC+ H   +LGK+A+  + +++P  +G +++L
Sbjct: 601 AGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLL 660

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           SN+YA+ GKWE   + R I  G G +K  G S +EV +KV  F   ++     + +Y  L
Sbjct: 661 SNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYREL 720

Query: 583 EMLIRHMNETAYEPDIDCLIHDLEGE 608
             L   +    Y PD   ++ D+E +
Sbjct: 721 TALQAKLKMIGYVPDHRFVLQDVEDD 746



 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 144/499 (28%), Positives = 262/499 (52%), Gaps = 27/499 (5%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF-VEMVRN 106
           ++  L+  Y   G +  AR  FD +  RDV +W +MI+GY      ++    F + M+ +
Sbjct: 88  ISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSS 147

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + P+  T  SVLKAC   +++ +   +H +A+K G    +YV  SL+ +Y+    ++ N
Sbjct: 148 GLTPDYRTFPSVLKAC---RTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSR-YKAVGN 203

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVE-MNPYSFSIAVRACA 225
           AR++F++M  ++  SW  +I+GY  SGN    L      L  G+  M+  +    + AC 
Sbjct: 204 ARILFDEMPVRDMGSWNAMISGYCQSGNAKEAL-----TLSNGLRAMDSVTVVSLLSACT 258

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
             G  + G  IH+  IKHG  S L V N ++D+Y  F  L D  + FD M  +DLI+WN+
Sbjct: 259 EAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNS 318

Query: 286 IIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           II  YE +      +++F +M+  R  P+C T  S+ +  + L  +   + V    +R+G
Sbjct: 319 IIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKG 378

Query: 345 -LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
               ++ + NA++ MYAK G +  ++ +F+ + + D+++W +++ GY  +G   EAIE++
Sbjct: 379 WFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMY 438

Query: 404 DEMVKSG-VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           + M + G +  ++  +++VL ACS AG + +G+K    +    +  +  +   + D+ G+
Sbjct: 439 NIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGK 498

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAAL---RVLD--LKPNMMG 517
            GR+++A  L   +P + +   W  L+ AC  H     G+ A +    +LD  +KP+ + 
Sbjct: 499 CGRLEDALSLFYQIP-RVNSVPWNTLI-AC--HGFHGHGEKAVMLFKEMLDEGVKPDHIT 554

Query: 518 TYIILSNIYAA----EGKW 532
              +LS    +    EG+W
Sbjct: 555 FVTLLSACSHSGLVDEGQW 573


>gi|297804022|ref|XP_002869895.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315731|gb|EFH46154.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 853

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 177/536 (33%), Positives = 307/536 (57%), Gaps = 6/536 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +  +L+  Y   G  ++A  LF  M   D V+W  MI+GY       ++   F EM+ + 
Sbjct: 272 IKNSLLSMYSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSG 331

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDN 166
           V P+A T SS+L +    ++L     +H   ++  +   I++ ++L+D Y  C  +SM  
Sbjct: 332 VLPDAITFSSLLPSVSKFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSM-- 389

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A+ +F+     + V +T +I+GY H+G     L +F+ ++   +  N  +    +     
Sbjct: 390 AQKIFSQCNSVDVVVFTAMISGYLHNGLNIDALEMFRWLVKVKISPNEITLVSILPVIGG 449

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  G+ +H  +IK GF +   +  +++DMY +   ++ A + F  ++++D+++WN++
Sbjct: 450 LLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFGRLSKRDIVSWNSM 509

Query: 287 IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I    +S + S  +++F +M       +C + ++ ++ACA L + S G+ +H  +++  L
Sbjct: 510 ITRCAQSDNPSAAIDIFRQMGVSGICFDCVSISAALSACANLPSESFGKAIHGFMIKHSL 569

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             ++   + LIDMYAKCGN+  +  +F  M ++++V+W S++  YG HG  K+++ LF E
Sbjct: 570 ALDVYSESTLIDMYAKCGNLKAAMNVFDTMKEKNIVSWNSIIAAYGNHGKLKDSLCLFHE 629

Query: 406 MV-KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRA 463
           MV KSG RPD+I F+ +++ C H G VDEG+++F+SM  DY + P +E Y CVVDL GRA
Sbjct: 630 MVEKSGNRPDQITFLEIISLCCHVGDVDEGVRFFRSMTQDYGIQPQQEHYACVVDLFGRA 689

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           GR+ EAYE +KSMPF PD  VWG LLGA + H+   L K+A+ R++DL P   G Y+++S
Sbjct: 690 GRLSEAYETVKSMPFPPDAGVWGTLLGASRLHKNVELAKVASSRLMDLDPWNSGYYVLIS 749

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVY 579
           N +A  G+WE   K R +M+    +K  G SWIE+      F++ D     + ++Y
Sbjct: 750 NAHANTGEWESVTKVRSLMKEREVQKIPGYSWIEINKITHLFVSGDVNHPESSHIY 805



 Score =  208 bits (530), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 126/449 (28%), Positives = 229/449 (51%), Gaps = 3/449 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A++LIK+Y + G I+ A  LFD + ++D V W VM+ GY      +     F  M  ++
Sbjct: 171 VASSLIKAYLEYGKIDVAGKLFDRVLQKDCVIWNVMLNGYAKCGASDSVIKGFSLMRMDQ 230

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           ++PNA T   VL  C     +     +HG+ +  GL+    ++NSL+ +Y+ C    D+A
Sbjct: 231 ISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGLDFEGSIKNSLLSMYSKCG-RFDDA 289

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             +F  M   + V+W  +I+GY  SG     L  F EM+  GV  +  +FS  + + +  
Sbjct: 290 IKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLPDAITFSSLLPSVSKF 349

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             + + + IH  +++H    ++ + ++++D Y +   +S A + F +    D++ +  +I
Sbjct: 350 ENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKIFSQCNSVDVVVFTAMI 409

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           +GY  +G + + L MF  +   + SPN  T  SI+     L AL  G+++H  I+++G D
Sbjct: 410 SGYLHNGLNIDALEMFRWLVKVKISPNEITLVSILPVIGGLLALKLGRELHGFIIKKGFD 469

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
               +  A+IDMYAKCG ++ + +IF  +S RD+V+W SM+       +   AI++F +M
Sbjct: 470 NRCNIGCAVIDMYAKCGRMNLAYEIFGRLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQM 529

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
             SG+  D +   A L+AC++      G      M  +++  +      ++D+  + G +
Sbjct: 530 GVSGICFDCVSISAALSACANLPSESFGKAIHGFMIKHSLALDVYSESTLIDMYAKCGNL 589

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEH 495
           K A  +  +M  K   S W  ++ A   H
Sbjct: 590 KAAMNVFDTMKEKNIVS-WNSIIAAYGNH 617



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 119/425 (28%), Positives = 212/425 (49%), Gaps = 11/425 (2%)

Query: 80  WTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAI 139
           W  +I+ +      NQA   + +M+   V+P+  T   ++KAC  +K+      +     
Sbjct: 102 WNSIISSFVRMGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIEFLSDTVS 161

Query: 140 KEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGL 199
             G++ + +V +SL+  Y      +D A  +F+ +  K+ V W  ++ GYA  G     +
Sbjct: 162 SLGMDCNEFVASSLIKAYLEYG-KIDVAGKLFDRVLQKDCVIWNVMLNGYAKCGASDSVI 220

Query: 200 GVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMY 259
             F  M ++ +  N  +F   +  CAS   +  G  +H  V+  G      + NS+L MY
Sbjct: 221 KGFSLMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGLDFEGSIKNSLLSMY 280

Query: 260 CRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFT 318
            +     DA + F  M+  D +TWN +I+GY +SG   E L  F +M S    P+  TF+
Sbjct: 281 SKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLPDAITFS 340

Query: 319 SIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR 378
           S++ + +    L   +Q+H  I+R  +  ++ L +ALID Y KC  +S +QKIFS+ +  
Sbjct: 341 SLLPSVSKFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKIFSQCNSV 400

Query: 379 DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYF 438
           D+V +T+M+ GY  +G   +A+E+F  +VK  + P+ I  +++L      GL+   LK  
Sbjct: 401 DVVVFTAMISGYLHNGLNIDALEMFRWLVKVKISPNEITLVSILPVI--GGLL--ALKLG 456

Query: 439 KSMNDYNVNP---NKEIYGC-VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKE 494
           + ++ + +     N+   GC V+D+  + GR+  AYE+   +  K D   W  ++  C +
Sbjct: 457 RELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFGRLS-KRDIVSWNSMITRCAQ 515

Query: 495 HRLPN 499
              P+
Sbjct: 516 SDNPS 520



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 98/332 (29%), Positives = 167/332 (50%), Gaps = 6/332 (1%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFN-D 173
           LS +L+ C  +  L     VH   I   + G  Y +  ++ +YA C    +  ++ +  D
Sbjct: 34  LSLLLQDCSNLTLLRQGKQVHAFVIVNRISGDSYTDERILGMYAMCGSFSNCGKMFYRLD 93

Query: 174 MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG 233
            +  +   W ++I+ +   G     L  + +ML  GV  +  +F   V+AC +       
Sbjct: 94  SRLSSIRPWNSIISSFVRMGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGI 153

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
           + +   V   G   N  V +S++  Y  +  +  A + FD + +KD + WN ++ GY K 
Sbjct: 154 EFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVAGKLFDRVLQKDCVIWNVMLNGYAKC 213

Query: 294 GSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
           G+S+  +  FS M+ ++ SPN  TF  +++ CA+   +  G Q+H  +V  GLD   ++ 
Sbjct: 214 GASDSVIKGFSLMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGLDFEGSIK 273

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
           N+L+ MY+KCG   D+ K+F  MS  D VTW  M+ GY   G  +E++  F EM+ SGV 
Sbjct: 274 NSLLSMYSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVL 333

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDY 444
           PD I F ++L + S      E L+Y + ++ Y
Sbjct: 334 PDAITFSSLLPSVSKF----ENLEYCRQIHCY 361



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 127/282 (45%), Gaps = 4/282 (1%)

Query: 211 EMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQ 270
           E  P   S+ ++ C++   +  GK +HA VI +    +      IL MY      S+  +
Sbjct: 28  ETLPRRLSLLLQDCSNLTLLRQGKQVHAFVIVNRISGDSYTDERILGMYAMCGSFSNCGK 87

Query: 271 YFDEMTEK--DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATL 327
            F  +  +   +  WN+II+ + + G  ++ L  + KM     SP+  TF  ++ AC  L
Sbjct: 88  MFYRLDSRLSSIRPWNSIISSFVRMGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVAL 147

Query: 328 AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMM 387
                 + +   +   G+D N  +A++LI  Y + G I  + K+F  +  +D V W  M+
Sbjct: 148 KNFKGIEFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVAGKLFDRVLQKDCVIWNVML 207

Query: 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN 447
            GY   G     I+ F  M    + P+ + F  VL+ C+   L+D G++    +    ++
Sbjct: 208 NGYAKCGASDSVIKGFSLMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGLD 267

Query: 448 PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
               I   ++ +  + GR  +A +L + M  + D   W  ++
Sbjct: 268 FEGSIKNSLLSMYSKCGRFDDAIKLFRMMS-RADTVTWNCMI 308


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 175/497 (35%), Positives = 288/497 (57%), Gaps = 2/497 (0%)

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           E+ P      + + AC   K+L +A  VH         G  +++NSL+ +Y  C  S+  
Sbjct: 46  ELAPTPRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCG-SVLE 104

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR VF++M+ K+ VSWT+LI GYA +      +G+   ML    + N ++F+  ++A  +
Sbjct: 105 ARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGA 164

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
                 G+ IHA  +K  +  ++ V +++LDMY R   +  A   FD++  K+ ++WN +
Sbjct: 165 HADSGIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNAL 224

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+G+ + G  E  L  F++M    F    FT++S+ ++ A L AL  G+ VHA +++   
Sbjct: 225 ISGFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQ 284

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
                  N L+DMYAK G++ D++K+F  + D+DLVTW +M+  +  +G GKEA+  F+E
Sbjct: 285 KMTAFAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEE 344

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M KSG+  +++ F+ +LTACSH GLV EG +YF+ M +Y++ P  + +  VV LLGRAG 
Sbjct: 345 MRKSGIYLNQVTFLCILTACSHGGLVKEGKRYFEMMKEYDLEPEIDHFVTVVALLGRAGL 404

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           +  A   I  MP +P  +VWG LL AC+ H+   +G+ AA  V +L P+  G  ++L NI
Sbjct: 405 LNFALVFIFKMPIEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNI 464

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           YA+ G+W+  A+ R+IM+  G KKE   SW+E+ + V  F+AND      + +Y +   +
Sbjct: 465 YASTGQWDAAARVRRIMKTTGVKKEPACSWVEMENSVHMFVANDDTHPRAEEIYKMWGQI 524

Query: 586 IRHMNETAYEPDIDCLI 602
            + + +  Y PD+D ++
Sbjct: 525 SKKIRKEGYVPDMDYVL 541



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 74/136 (54%), Gaps = 1/136 (0%)

Query: 294 GSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353
            +S  L     + +   +P    + + I ACA    L   ++VHA +      G+  L N
Sbjct: 31  AASAVLRDLDLLDAGELAPTPRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDN 90

Query: 354 ALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP 413
           +LI +Y KCG++ +++K+F EM  +D+V+WTS++ GY  +   +EAI L   M+K   +P
Sbjct: 91  SLIHLYCKCGSVLEARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKP 150

Query: 414 DRIVFMAVLTAC-SHA 428
           +   F ++L A  +HA
Sbjct: 151 NGFTFASLLKAAGAHA 166



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 11/100 (11%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           K  +     L+  Y   G + +AR +FD + ++D+V+W  M+  +  +    +A + F E
Sbjct: 285 KMTAFAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEE 344

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG 142
           M ++ +  N  T   +L AC            HG  +KEG
Sbjct: 345 MRKSGIYLNQVTFLCILTACS-----------HGGLVKEG 373


>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 599

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 197/578 (34%), Positives = 320/578 (55%), Gaps = 11/578 (1%)

Query: 24  QSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVM 83
           Q L+ +   SI S           + T +I S+     ++ A  +F++  E D   +  M
Sbjct: 20  QQLKQIHAKSIISSLSY----TQFIITKIINSFLSHACLDYATQVFNQTQEPDGFIYNAM 75

Query: 84  IAGYTSFNCHNQAWTVFVEMVR-NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG 142
           I  Y+S      A +++ +M     +  + +T   V KAC    ++     VHG+ ++ G
Sbjct: 76  IRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVEKGKEVHGVIVRIG 135

Query: 143 LEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVF 202
            E   ++++SL++ Y  C   + NA+ VF++   K+ V W  LITGYA  G      GVF
Sbjct: 136 YELDGFLQSSLLNFYMVCG-EIGNAQQVFDEFDAKDVVFWNALITGYARQGMVLDSFGVF 194

Query: 203 KEML-LEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG-FGSNLPVMNSILDMYC 260
           KEM+ ++ V  N  +    + AC  +  +  G+ IH  ++K       + +  +++++Y 
Sbjct: 195 KEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAALINLYV 254

Query: 261 RFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTS 319
           +   L  A + FDE+ EK+ + WN++I GY + GS +E + +  +M      P+ FT + 
Sbjct: 255 KCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSG 314

Query: 320 IIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD 379
           +++ACA + A + G  VH    ++G+  ++ +  ALIDMYAKCG I  ++K+F +M++R+
Sbjct: 315 VLSACAQMGAFNLGNWVHRFAEKKGI-WDVFIGTALIDMYAKCGFIGAARKVFDQMNERN 373

Query: 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439
           + TW +++ GY +HG  + AIELF EM +SG RPD I F+AVL AC+H+GLV+ G +YF 
Sbjct: 374 VATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHSGLVENGKQYFD 433

Query: 440 SM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLP 498
            M   Y + P  E YGC+VDLLGRAG ++EA ELIK M  +P+  VWG LL AC  H   
Sbjct: 434 LMLQYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVEPNVVVWGALLSACSIHGNI 493

Query: 499 NLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEV 558
            +G+ AA  ++ L     G+Y+IL+N+YA+  ++      R++M   G  K  G S IE+
Sbjct: 494 EIGEWAAHHMIKLNAMDGGSYVILANLYASAQRFNRVKAVREMMVEKGICKSHGCSMIEI 553

Query: 559 RDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEP 596
            D V  F+  DKM   ++ +Y VL+ L + +    Y P
Sbjct: 554 GDVVHEFVVADKMHPRSEEIYSVLDELSKKLKMAGYVP 591


>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
 gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 843

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 171/549 (31%), Positives = 321/549 (58%), Gaps = 3/549 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A  L+  Y     +++   LF  MP  D+V+W  MI+G       +QA  +F +M ++ 
Sbjct: 284 VANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSG 343

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + P++ TL S+L A   +   +    +HG  ++  +   +++ ++L+D+Y  C  ++  A
Sbjct: 344 IRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKC-RAVRMA 402

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           + V++  K  + V  +T+I+GY  +G     + +F+ +L +G+  N  + +  + ACAS 
Sbjct: 403 QSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASM 462

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  G+ +H+  +K+ +     V ++++DMY +   L  ++  F +++ KD +TWN++I
Sbjct: 463 AAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMI 522

Query: 288 AGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           + + ++G   E LN+F +M  E    +  T +S+++ACA+L A+  G+++H  +++  + 
Sbjct: 523 SSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIR 582

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            +L   +ALIDMY KCGN+  + ++F  M +++ V+W S++  YGA+G  KE++ L   M
Sbjct: 583 ADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHM 642

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGR 465
            + G + D + F+A+++AC+HAG V EGL+ F+ M  +Y + P  E + C+VDL  RAG+
Sbjct: 643 QEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGK 702

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           + +A ELI  MPFKPD  +WG LL AC+ HR   L ++A+  +  L P+  G Y+++SNI
Sbjct: 703 LDKAMELIVDMPFKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNI 762

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
            A  G+W+  +K R++M+    +K  G SW++V +    F+A DK    ++ +Y  L+ +
Sbjct: 763 NAVAGRWDGVSKVRRLMKDTKVQKIPGYSWVDVNNTSHLFVAADKSHPDSEDIYMSLKSI 822

Query: 586 IRHMNETAY 594
           +  + E  +
Sbjct: 823 LLELREEGH 831



 Score =  215 bits (547), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 128/449 (28%), Positives = 234/449 (52%), Gaps = 3/449 (0%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   + + LIK Y + GL+ +AR +FD M ERD V W VM+ GY      + A  +F +M
Sbjct: 179 GDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDM 238

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
             +   PN  TL+  L        L     +H +A+K GLE  + V N+L+ +YA  C  
Sbjct: 239 RASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAK-CKC 297

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +D+   +F  M   + V+W  +I+G   +G     L +F +M   G+  +  +    + A
Sbjct: 298 LDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPA 357

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
                  + GK +H  ++++    ++ ++++++D+Y +   +  A   +D     D++  
Sbjct: 358 LTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIG 417

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           +T+I+GY  +G S E + MF  +  +   PN     S++ ACA++AA+  GQ++H+  ++
Sbjct: 418 STMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALK 477

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
              +G   + +AL+DMYAKCG +  S  IFS++S +D VTW SM+  +  +G  +EA+ L
Sbjct: 478 NAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNL 537

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           F EM   GV+   +   +VL+AC+    +  G +    +    +  +      ++D+ G+
Sbjct: 538 FREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGK 597

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGA 491
            G ++ A+ + +SMP K +E  W  ++ +
Sbjct: 598 CGNLEWAHRVFESMPEK-NEVSWNSIIAS 625



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 117/463 (25%), Positives = 231/463 (49%), Gaps = 16/463 (3%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDV---VSWTVMIAGYTSFNCHNQAWTVFVE 102
           + L T L+  Y       +A  +F  +P       + W  +I G T    +  A   +++
Sbjct: 75  TALQTRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLK 134

Query: 103 MVRNEVNP--NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
           M  +   P  ++ T   V+K+C  + +++   LVH  A   GL+G ++V ++L+ +YA  
Sbjct: 135 MWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANG 194

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
            +  D AR VF+ M  ++ V W  ++ GY  +G+    + +F +M   G E N  + +  
Sbjct: 195 GLLWD-ARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACF 253

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           +   A+   + FG  +H   +K+G  S + V N+++ MY +  CL D  + F  M   DL
Sbjct: 254 LSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDL 313

Query: 281 ITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           +TWN +I+G  ++G   + L +F  M+     P+  T  S++ A   L   + G+++H  
Sbjct: 314 VTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGY 373

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
           IVR  +  ++ L +AL+D+Y KC  +  +Q ++      D+V  ++M+ GY  +G  +EA
Sbjct: 374 IVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEA 433

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE----IYGC 455
           +++F  +++ G+RP+ +   +VL AC+        +K  + ++ Y +    E    +   
Sbjct: 434 VKMFRYLLEQGIRPNAVAIASVLPACASMA----AMKLGQELHSYALKNAYEGRCYVESA 489

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLP 498
           ++D+  + GR+  ++ +   +  K DE  W  ++ +  ++  P
Sbjct: 490 LMDMYAKCGRLDLSHYIFSKISAK-DEVTWNSMISSFAQNGEP 531



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 108/351 (30%), Positives = 173/351 (49%), Gaps = 25/351 (7%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGS-IYVENSLMDVYATCCISMDNARLVFND 173
           L +VL+ C     LS    VHG A+  GL  +   ++  L+ +Y        +A  VF+ 
Sbjct: 42  LLAVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMY-VLARRFRDAVAVFSS 100

Query: 174 MKWKND---VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP--YSFSIAVRACASTG 228
           +        + W  LI G   +G+    L  + +M        P  ++F   V++CA+ G
Sbjct: 101 LPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALG 160

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            ++ G+L+H      G   ++ V ++++ MY     L DA Q FD M E+D + WN ++ 
Sbjct: 161 AIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMD 220

Query: 289 GYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           GY K+GS S  + +F  M++    PN  T    ++  AT + L  G Q+H   V+ GL+ 
Sbjct: 221 GYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLES 280

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
            +A+AN L+ MYAKC  + D  K+F  M   DLVTW  M+ G   +G   +A+ LF +M 
Sbjct: 281 EVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQ 340

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYN-VNPNKEIYGCVV 457
           KSG+RPD +  +++L A                + D N  N  KE++G +V
Sbjct: 341 KSGIRPDSVTLVSLLPA----------------LTDLNGFNQGKELHGYIV 375



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 127/282 (45%), Gaps = 8/282 (2%)

Query: 221 VRACASTGWVSFGKLIHAAVIKHGF-GSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
           +R C S   +S G  +H   +  G   ++  +   ++ MY       DA   F  +    
Sbjct: 46  LRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRGA 105

Query: 280 L---ITWNTIIAGYEKSGS-SECLNMFSKMKSERFSP--NCFTFTSIIAACATLAALSCG 333
               + WN +I G   +G     L  + KM +   +P  +  TF  ++ +CA L A++ G
Sbjct: 106 AACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALG 165

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
           + VH      GLDG++ + +ALI MYA  G + D++++F  M++RD V W  MM GY   
Sbjct: 166 RLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKA 225

Query: 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIY 453
           G    A+ELF +M  SG  P+       L+  +    +  G++       Y +     + 
Sbjct: 226 GSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVA 285

Query: 454 GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
             +V +  +   + + ++L   MP + D   W  ++  C ++
Sbjct: 286 NTLVSMYAKCKCLDDGWKLFGLMP-RDDLVTWNGMISGCVQN 326



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 117/247 (47%), Gaps = 3/247 (1%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           +G   + + L+  Y   G ++ +  +F ++  +D V+W  MI+ +       +A  +F E
Sbjct: 481 EGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFRE 540

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M    V  +  T+SSVL AC  + ++     +HG+ IK  +   ++ E++L+D+Y  C  
Sbjct: 541 MCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCG- 599

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
           +++ A  VF  M  KN+VSW ++I  Y   G     + + + M  EG + +  +F   V 
Sbjct: 600 NLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVS 659

Query: 223 ACASTGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DL 280
           ACA  G V  G +L      ++     +     ++D+Y R   L  A +   +M  K D 
Sbjct: 660 ACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDA 719

Query: 281 ITWNTII 287
             W  ++
Sbjct: 720 GIWGALL 726


>gi|414869047|tpg|DAA47604.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 694

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 192/546 (35%), Positives = 307/546 (56%), Gaps = 8/546 (1%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108
           A+ L+  Y   G + +AR +FD MP R++VSW  +IAGYT      +A  +F+EM R   
Sbjct: 129 ASALLDVYAKCGRLGDARRVFDGMPVRNIVSWNAIIAGYTDSRKPAEAMELFLEMQRVGS 188

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
            P+  T + +L    G +  S    +HG  +K G    +   N+ +  Y+ C  ++ ++R
Sbjct: 189 VPDGTTFAVLLATIAGPRWYSLMRQLHGKIVKYGSALGLVALNAAITAYSQC-DALADSR 247

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAVRACAST 227
            +F+ ++ ++ +SW +++  YA+ G     +  F  M+ E G++ + YSF+ A+  C+  
Sbjct: 248 KIFDGIESRDLISWNSMLGAYAYHGLDDEAMRFFVRMMRESGIQPDMYSFTSAISVCSEH 307

Query: 228 GWV-SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRF--DCL-SDANQYFDEMTEKDLITW 283
           G     G+ IH+ VIK G     PV N+++ MY RF  +C+  DA   F  +  KD ++W
Sbjct: 308 GCDDQQGRSIHSLVIKFGLEGVTPVCNAMIAMYTRFADNCMMEDAYNCFSSLVFKDAVSW 367

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N+++ GY   G SS+ L  F  M++E    + F  ++ + +C+ LA L  G+QVH+ +V+
Sbjct: 368 NSMLTGYSHHGLSSDALKFFRCMRAENIRTDEFGLSAALRSCSDLAVLRLGRQVHSLVVQ 427

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            G   N  ++++LI MY+KCG + D++K F E      V W SMM GY  HG  +   +L
Sbjct: 428 SGFASNDFVSSSLIFMYSKCGVLGDARKSFEEADKSSSVPWNSMMFGYAQHGQAQTVTDL 487

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLG 461
           F+EM+   V  D + F+A++TA SH GLVDEG +   +M   Y +    E Y C VDL G
Sbjct: 488 FNEMLDLEVPLDHVTFVALITAYSHGGLVDEGSEILNTMETRYKIPMRMEHYACGVDLYG 547

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           RAG++ +A ELI+SMPF+PD  VW  LLGAC+ H    L    A  +   +P    TY++
Sbjct: 548 RAGQLDKAKELIESMPFQPDAIVWMTLLGACRIHGNMELASDVARHLFVAEPRQHSTYVL 607

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGV 581
           LS++Y+  G W + A  +K+MR     K  G SWIEV+++V  F A+D+       ++ +
Sbjct: 608 LSSMYSGLGMWSDRATVQKVMRNRALSKIPGWSWIEVKNEVHSFNADDRSHPRMVEIFDM 667

Query: 582 LEMLIR 587
           L ML++
Sbjct: 668 LRMLLQ 673



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 130/510 (25%), Positives = 242/510 (47%), Gaps = 13/510 (2%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
            L+ +Y   GL   AR +FDE+P  D  SW  ++A + +   H  AW +   M    +  
Sbjct: 31  QLLTAYSATGL-AAARRVFDEIPHPDAASWNSLLAAHVAAGAHRDAWRLLRAMHARGLAA 89

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           + F L S L++    +     A +   +++ GL  +++  ++L+DVYA C   + +AR V
Sbjct: 90  STFALGSALRSAAAARRPELGAQLQSFSVRCGLADNVFPASALLDVYAKCG-RLGDARRV 148

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F+ M  +N VSW  +I GY  S      + +F EM   G   +  +F++ +   A   W 
Sbjct: 149 FDGMPVRNIVSWNAIIAGYTDSRKPAEAMELFLEMQRVGSVPDGTTFAVLLATIAGPRWY 208

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
           S  + +H  ++K+G    L  +N+ +  Y + D L+D+ + FD +  +DLI+WN+++  Y
Sbjct: 209 SLMRQLHGKIVKYGSALGLVALNAAITAYSQCDALADSRKIFDGIESRDLISWNSMLGAY 268

Query: 291 EKSG-SSECLNMFSKMKSER-FSPNCFTFTSIIAACATLAA-LSCGQQVHAGIVRRGLDG 347
              G   E +  F +M  E    P+ ++FTS I+ C+        G+ +H+ +++ GL+G
Sbjct: 269 AYHGLDDEAMRFFVRMMRESGIQPDMYSFTSAISVCSEHGCDDQQGRSIHSLVIKFGLEG 328

Query: 348 NLALANALIDMYAKCGN---ISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
              + NA+I MY +  +   + D+   FS +  +D V+W SM+ GY  HG   +A++ F 
Sbjct: 329 VTPVCNAMIAMYTRFADNCMMEDAYNCFSSLVFKDAVSWNSMLTGYSHHGLSSDALKFFR 388

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
            M    +R D     A L +CS   ++  G +    +       N  +   ++ +  + G
Sbjct: 389 CMRAENIRTDEFGLSAALRSCSDLAVLRLGRQVHSLVVQSGFASNDFVSSSLIFMYSKCG 448

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLK-PNMMGTYIILS 523
            + +A +  +    K     W  ++    +H            +LDL+ P    T++ L 
Sbjct: 449 VLGDARKSFEEAD-KSSSVPWNSMMFGYAQHGQAQTVTDLFNEMLDLEVPLDHVTFVALI 507

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGM 553
             Y+  G  +E +   +I+  M ++ ++ M
Sbjct: 508 TAYSHGGLVDEGS---EILNTMETRYKIPM 534



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 101/373 (27%), Positives = 181/373 (48%), Gaps = 10/373 (2%)

Query: 131 AALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYA 190
           AA  H   +K G   S    N L+  Y+   ++   AR VF+++   +  SW +L+  + 
Sbjct: 11  AAKSHATLLKSG-ASSPTPWNQLLTAYSATGLAA--ARRVFDEIPHPDAASWNSLLAAHV 67

Query: 191 HSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLP 250
            +G       + + M   G+  + ++   A+R+ A+      G  + +  ++ G   N+ 
Sbjct: 68  AAGAHRDAWRLLRAMHARGLAASTFALGSALRSAAAARRPELGAQLQSFSVRCGLADNVF 127

Query: 251 VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS-GSSECLNMFSKMKSER 309
             +++LD+Y +   L DA + FD M  +++++WN IIAGY  S   +E + +F +M+   
Sbjct: 128 PASALLDVYAKCGRLGDARRVFDGMPVRNIVSWNAIIAGYTDSRKPAEAMELFLEMQRVG 187

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
             P+  TF  ++A  A     S  +Q+H  IV+ G    L   NA I  Y++C  ++DS+
Sbjct: 188 SVPDGTTFAVLLATIAGPRWYSLMRQLHGKIVKYGSALGLVALNAAITAYSQCDALADSR 247

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK-SGVRPDRIVFMAVLTACSHA 428
           KIF  +  RDL++W SM+  Y  HG   EA+  F  M++ SG++PD   F + ++ CS  
Sbjct: 248 KIFDGIESRDLISWNSMLGAYAYHGLDDEAMRFFVRMMRESGIQPDMYSFTSAISVCSEH 307

Query: 429 GLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGR---VKEAYELIKSMPFKPDESV 484
           G  D+  +   S+   + +     +   ++ +  R      +++AY    S+ FK D   
Sbjct: 308 GCDDQQGRSIHSLVIKFGLEGVTPVCNAMIAMYTRFADNCMMEDAYNCFSSLVFK-DAVS 366

Query: 485 WGPLLGACKEHRL 497
           W  +L     H L
Sbjct: 367 WNSMLTGYSHHGL 379


>gi|147863814|emb|CAN79347.1| hypothetical protein VITISV_019894 [Vitis vinifera]
          Length = 667

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 187/587 (31%), Positives = 327/587 (55%), Gaps = 13/587 (2%)

Query: 14  HCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKS-YFDEGLIEEARTLFDEM 72
           H ++   +++  + S   S        +P+ PS+++ N I S YF  GL+ EA  LFD  
Sbjct: 49  HVYQCNILLQAYINSQALSDAHKLLHFMPQ-PSVVSYNTILSGYFKFGLVSEAIKLFDGT 107

Query: 73  PERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAA 132
            +RD  SW ++++G    +   +  T F++M  + V P+ FT + ++  C     L    
Sbjct: 108 SKRDCHSWNIVLSGCVKNHKLGEGLTHFMKMRCSSVRPDNFTYAIIIPCC----DLGFGQ 163

Query: 133 LVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHS 192
            VH   +K   +   ++  +L+ +YA     + +AR VF+ M  +  V+W  +I+ Y+  
Sbjct: 164 QVHADIVKVCSDLDAFIGTNLLRMYAEVG-EIGDARKVFDGMPSRGLVTWNAMISCYSKY 222

Query: 193 GNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVM 252
           G G   +G+F+++  EG+  + Y+++I +   A+   V     +H+ +I+ GF S+    
Sbjct: 223 GRGDKSIGLFRQLXREGISADEYTYAIVLNEFAARWQVFEAMQVHSLIIERGFCSDRFTN 282

Query: 253 NSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFS 311
           N+++++Y +   ++ A++ F+E+ ++D+++W  II G+ +SG   E + +F +M+     
Sbjct: 283 NALVNLYSKCGYVASASRLFEEIPDQDVVSWTVIIVGFLQSGHMEEAMWLFYQMQLGDIE 342

Query: 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG-NLALANALIDMYAKCGNISDSQK 370
           PN FTF  ++ ACA   A   G+  H  +++ GL G ++ + +A++DMY+KCG + D+ +
Sbjct: 343 PNSFTFGGLLGACADANAFQKGRHFHGLVLKFGLLGADVVVGSAVVDMYSKCGEMGDALR 402

Query: 371 IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV---KSGVRPDRIVFMAVLTACSH 427
            F EM +RD+ +W  ++ GY  +G G +A++L++EMV    SG+ P+ + F+ VL ACSH
Sbjct: 403 AFQEMPERDIASWNGIICGYAQNGAGMKALKLYNEMVLLGPSGIAPNEVTFVGVLCACSH 462

Query: 428 AGLVDEGLKYFKSMNDYN-VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWG 486
            GL+ EG  YFK M D + + P  E Y C+VDLLGRAG ++EA  LI ++P KPD  +WG
Sbjct: 463 NGLLKEGYSYFKEMVDKHLIKPTAEHYTCMVDLLGRAGLLQEAEALILALPIKPDNVMWG 522

Query: 487 PLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546
            LLGACK H    + +  A  +   +P     Y++L+N Y   G+W E  + R++M   G
Sbjct: 523 ALLGACKLHGDVQMTRRTAEHLYTNEPRNSSNYVLLANSYTDIGEWGEAVEIREVMEARG 582

Query: 547 SKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETA 593
            +K  G SW+E+   +  F+A D +    +    VL  L   M E +
Sbjct: 583 VEKTAGCSWVEIGTCMHSFLAGDXLHPQIEVASQVLPRLYLQMRERS 629



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 162/365 (44%), Gaps = 72/365 (19%)

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           S G +    ++HA+++K+G  +++   N +L  Y     LSDA++    M +  ++++NT
Sbjct: 27  SHGHMYKAPVLHASLVKNGLIAHVYQCNILLQAYINSQALSDAHKLLHFMPQPSVVSYNT 86

Query: 286 IIAGYEKSG--------------------------------SSECLNMFSKMKSERFSPN 313
           I++GY K G                                  E L  F KM+     P+
Sbjct: 87  ILSGYFKFGLVSEAIKLFDGTSKRDCHSWNIVLSGCVKNHKLGEGLTHFMKMRCSSVRPD 146

Query: 314 CFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFS 373
            FT+  II  C     L  GQQVHA IV+   D +  +   L+ MYA+ G I D++K+F 
Sbjct: 147 NFTYAIIIPCC----DLGFGQQVHADIVKVCSDLDAFIGTNLLRMYAEVGEIGDARKVFD 202

Query: 374 EMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS------- 426
            M  R LVTW +M+  Y  +G G ++I LF ++ + G+  D   +  VL   +       
Sbjct: 203 GMPSRGLVTWNAMISCYSKYGRGDKSIGLFRQLXREGISADEYTYAIVLNEFAARWQVFE 262

Query: 427 ----HAGLVDEGLKYFKSMNDYNVN------------------PNKEIYGCVVDLLG--R 462
               H+ +++ G    +  N+  VN                  P++++    V ++G  +
Sbjct: 263 AMQVHSLIIERGFCSDRFTNNALVNLYSKCGYVASASRLFEEIPDQDVVSWTVIIVGFLQ 322

Query: 463 AGRVKEAYELIKSMPF---KPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
           +G ++EA  L   M     +P+   +G LLGAC +      G+      L LK  ++G  
Sbjct: 323 SGHMEEAMWLFYQMQLGDIEPNSFTFGGLLGACADANAFQKGR--HFHGLVLKFGLLGAD 380

Query: 520 IILSN 524
           +++ +
Sbjct: 381 VVVGS 385


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 181/562 (32%), Positives = 314/562 (55%), Gaps = 5/562 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y      ++A  +F  +  ++V SWT+M+A +      ++ W  F  M+   +NP 
Sbjct: 16  LIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFFRGMLLQGINPG 75

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
              +S  L AC   + ++    +    +  G+E    V+ +L+ +Y       D A  VF
Sbjct: 76  EVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHCTDAAS-VF 134

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
             M  ++ V+W+ ++  YA +G+    LG+F++M L+GV  N  +    + ACAS G + 
Sbjct: 135 LRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLR 194

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            G L+H  V   G  S + V  +++++Y +   +  A + F ++ EK+++ W+ I A Y 
Sbjct: 195 SGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVAWSAISAAYA 254

Query: 292 KSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI--VRRGLDGN 348
           ++  + + + +  +M  E  +PN  TF S++ ACA +AAL  G+++H  I  +  GL+ +
Sbjct: 255 RNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGGLESD 314

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           + +  AL++MY+KCGN++ +  +F +++  DLV W S++     HG  ++A+ELF+ M  
Sbjct: 315 VYVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRL 374

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS-MNDYNVNPNKEIYGCVVDLLGRAGRVK 467
            G++P  I F +VL ACSHAG++D+G K+F S + D+ + P  E +GC+VDLLGRAG + 
Sbjct: 375 EGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIV 434

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527
           ++ +L+  MPF+P    W   LGAC+ +R  +    AA  +  L P     Y++LSN+YA
Sbjct: 435 DSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDGAIWAAENLFQLDPRKRAPYVLLSNMYA 494

Query: 528 AEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIR 587
             G+W + A+ R+ M+   + KE G SWIEV+D+V  FI+ D        ++  L+ L +
Sbjct: 495 KAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIHAELQRLTK 554

Query: 588 HMNETAYEPDIDCLIHDLEGET 609
            M    Y PD + ++HD++ E 
Sbjct: 555 LMKAAGYVPDTEMVLHDVKQEV 576



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 112/438 (25%), Positives = 199/438 (45%), Gaps = 42/438 (9%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           SI+ T L+  Y   G   +A ++F  M  RDVV+W+ M+A Y       +A  +F +M  
Sbjct: 111 SIVQTALVSLYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDL 170

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           + V PN  TL S L AC  +  L + AL+H     +G++  + V  +L+++Y  C   ++
Sbjct: 171 DGVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCG-RIE 229

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A   F  +  KN V+W+ +   YA +      + V   M LEG+  N  +F   + ACA
Sbjct: 230 AAAEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACA 289

Query: 226 STGWVSFGKLIHAA--VIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           +   +  G+ IH    V+  G  S++ V+ ++++MY +   L+ A   FD++   DL+ W
Sbjct: 290 AIAALKQGRRIHERIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLW 349

Query: 284 NTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV- 341
           N++IA   + G +E  L +F +M+ E   P   TFTS++ AC+    L  G++     + 
Sbjct: 350 NSLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIG 409

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
             G+         ++D+  + G I DS+ +   M                          
Sbjct: 410 DHGIFPEAEHFGCMVDLLGRAGWIVDSEDLLLHMP------------------------- 444

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEI-YGCVVDLL 460
                      P  + +MA L AC     +D  +  + + N + ++P K   Y  + ++ 
Sbjct: 445 ---------FEPHPVAWMAFLGACRTYRNMDGAI--WAAENLFQLDPRKRAPYVLLSNMY 493

Query: 461 GRAGRVKEAYELIKSMPF 478
            +AGR  +   + ++M  
Sbjct: 494 AKAGRWSDVARMRQAMQL 511



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 115/229 (50%), Gaps = 1/229 (0%)

Query: 244 GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMF 302
           G+  N  + N ++D+Y + D   DA   F  +  K++ +W  ++A + E      C   F
Sbjct: 5   GWIRNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFF 64

Query: 303 SKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362
             M  +  +P     +  ++AC     ++ G+ +   I+  G++    +  AL+ +Y K 
Sbjct: 65  RGMLLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKL 124

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
           G+ +D+  +F  MS RD+V W++M+  Y  +GH +EA+ LF +M   GV P+++  ++ L
Sbjct: 125 GHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGL 184

Query: 423 TACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471
            AC+  G +  G    + +    +     +   +V+L G+ GR++ A E
Sbjct: 185 DACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAE 233



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 69/170 (40%), Gaps = 5/170 (2%)

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           N  L N LID+Y KC    D+  +F  +  +++ +WT M+  +  +         F  M+
Sbjct: 9   NRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFFRGML 68

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
             G+ P  +     L+AC+ A  +  G     ++    +     +   +V L G+ G   
Sbjct: 69  LQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHCT 128

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLK---PN 514
           +A  +   M  + D   W  ++ A   +  P    L   R +DL    PN
Sbjct: 129 DAASVFLRMSHR-DVVAWSAMVAAYARNGHPR-EALGLFRQMDLDGVAPN 176


>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
 gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
          Length = 583

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 194/526 (36%), Positives = 289/526 (54%), Gaps = 13/526 (2%)

Query: 62  IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121
           +E+  T     P      +  +I GY        A +V+  MVR+   P+ FT   +LKA
Sbjct: 61  LEQGNTRLGSFP------FNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKA 114

Query: 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS 181
           C           VHG+ +K GL    YV+NSL+  Y  C      A  VF++M  ++ VS
Sbjct: 115 CSNFSGSREGRQVHGVVVKLGLLADHYVQNSLIRCYGACG-DFSCAGKVFDEMLVRDVVS 173

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           W +LI+G+  +G+    + VF  M    VE +  +    + ACA  G +  GK IH  VI
Sbjct: 174 WNSLISGFMKAGHFDEAISVFFRM---DVEPSMTTLVSVLAACARNGDLCTGKGIHG-VI 229

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLN 300
           +  F  NL + N++LDMY +  C  +A   FDE+  +D+++W  +I G  +S    + L 
Sbjct: 230 ERRFKVNLVLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLE 289

Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360
           +FS M++   SP+    TS+++ACA+L  L  G  VH  I +RG+  ++ +  A++DMYA
Sbjct: 290 LFSMMRTLGISPDAIILTSVLSACASLGTLDFGTWVHEYINQRGIKWDIHIGTAIVDMYA 349

Query: 361 KCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420
           KCG I  + KIF  MS R+  TW +++ G   HG   EA+ LF+ M+ SGV+P+ I F+A
Sbjct: 350 KCGCIEMALKIFYSMSQRNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLA 409

Query: 421 VLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
           +LTAC H GLVDEG KYF +M+  YN+ P  E YGC++DL  RAG ++EA EL ++MP K
Sbjct: 410 ILTACCHCGLVDEGRKYFDNMSKLYNLLPKLEHYGCMIDLFCRAGLLEEAVELARTMPMK 469

Query: 480 PDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFR 539
           PD  +WG LL AC       L       +L+L  +  G +++LSNI A   +W    + R
Sbjct: 470 PDVLIWGLLLNACTTVGNIELSHRIQDYILELDHDDSGVFVLLSNISAINQRWSNVTRLR 529

Query: 540 KIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           ++M+  G +K  G S IEV  K   F+  D     T+ +Y VL ++
Sbjct: 530 RLMKDRGVRKAPGSSVIEVDGKAHEFVVGDISHLQTEEIYKVLNLI 575



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/423 (27%), Positives = 210/423 (49%), Gaps = 28/423 (6%)

Query: 113 FTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT-------CC--IS 163
           + L   +K CK ++       +H   +  GL    +V + +M+ +A         C  + 
Sbjct: 6   WVLLDSIKDCKNLRIFRQ---IHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDYLE 62

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
             N RL            + +LI GY         + V++ M+ +G   + ++F + ++A
Sbjct: 63  QGNTRL--------GSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKA 114

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C++      G+ +H  V+K G  ++  V NS++  Y      S A + FDEM  +D+++W
Sbjct: 115 CSNFSGSREGRQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSW 174

Query: 284 NTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N++I+G+ K+G   E +++F +M  E   P+  T  S++AACA    L  G+ +H G++ 
Sbjct: 175 NSLISGFMKAGHFDEAISVFFRMDVE---PSMTTLVSVLAACARNGDLCTGKGIH-GVIE 230

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
           R    NL L NA++DMY K G   +++ IF E+  RD+V+WT M+ G     H K+++EL
Sbjct: 231 RRFKVNLVLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLEL 290

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           F  M   G+ PD I+  +VL+AC+  G +D G    + +N   +  +  I   +VD+  +
Sbjct: 291 FSMMRTLGISPDAIILTSVLSACASLGTLDFGTWVHEYINQRGIKWDIHIGTAIVDMYAK 350

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNMMGTYI 520
            G ++ A ++  SM  + +   W  LL     H L +  L     + +  +KPN +    
Sbjct: 351 CGCIEMALKIFYSMS-QRNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLA 409

Query: 521 ILS 523
           IL+
Sbjct: 410 ILT 412



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 172/344 (50%), Gaps = 10/344 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +  +LI+ Y   G    A  +FDEM  RDVVSW  +I+G+      ++A +VF  M   +
Sbjct: 142 VQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFDEAISVFFRM---D 198

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA-TCCISMDN 166
           V P+  TL SVL AC     L     +HG+ I+   + ++ + N+++D+Y    C     
Sbjct: 199 VEPSMTTLVSVLAACARNGDLCTGKGIHGV-IERRFKVNLVLGNAMLDMYVKNGCFY--E 255

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A+ +F+++  ++ VSWT +ITG   S +    L +F  M   G+  +    +  + ACAS
Sbjct: 256 AKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDAIILTSVLSACAS 315

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G + FG  +H  + + G   ++ +  +I+DMY +  C+  A + F  M++++  TWN +
Sbjct: 316 LGTLDFGTWVHEYINQRGIKWDIHIGTAIVDMYAKCGCIEMALKIFYSMSQRNTFTWNAL 375

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR-RG 344
           + G    G   E LN+F  M      PN  TF +I+ AC     +  G++    + +   
Sbjct: 376 LCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACCHCGLVDEGRKYFDNMSKLYN 435

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMM 387
           L   L     +ID++ + G + ++ ++   M  + D++ W  ++
Sbjct: 436 LLPKLEHYGCMIDLFCRAGLLEEAVELARTMPMKPDVLIWGLLL 479



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 127/254 (50%), Gaps = 5/254 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +L   ++  Y   G   EA+ +FDE+P RD+VSWT+MI G    +   Q+  +F  M   
Sbjct: 238 VLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTL 297

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMD 165
            ++P+A  L+SVL AC  + +L     VH    + G++  I++  +++D+YA C CI M 
Sbjct: 298 GISPDAIILTSVLSACASLGTLDFGTWVHEYINQRGIKWDIHIGTAIVDMYAKCGCIEM- 356

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A  +F  M  +N  +W  L+ G A  G  +  L +F+ M++ GV+ N  +F   + AC 
Sbjct: 357 -ALKIFYSMSQRNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACC 415

Query: 226 STGWVSFGKLIHAAVIK-HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLITW 283
             G V  G+     + K +     L     ++D++CR   L +A +    M  K D++ W
Sbjct: 416 HCGLVDEGRKYFDNMSKLYNLLPKLEHYGCMIDLFCRAGLLEEAVELARTMPMKPDVLIW 475

Query: 284 NTIIAGYEKSGSSE 297
             ++      G+ E
Sbjct: 476 GLLLNACTTVGNIE 489


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 204/576 (35%), Positives = 323/576 (56%), Gaps = 32/576 (5%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPER--DVVSWTVMIAGYTSFNCHNQAWTVFVEMV-- 104
           A  L+ +Y   G    A  +FDEMPE   DVVSWT +I+ Y+S  C ++A+  F  M   
Sbjct: 90  AAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFKAFGRMRWM 149

Query: 105 -----RNEVNPNAFTLSSVLKACK---GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDV 156
                      +  +L +++ AC    G   L   + VHG+ +K G   S ++ NS++ +
Sbjct: 150 RGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHM 209

Query: 157 YATCCISMDNARLVFNDM--KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG---VE 211
           Y+ C   +  A  VFN +  + ++ VSW +LI+G+  +G     L  F++M+ EG   VE
Sbjct: 210 YSAC-KDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVE 268

Query: 212 MNPYSFSIAVRACASTGWVSFGKLIHAAVI-KHG---FGSNLPVMNSILDMYCRFDCLSD 267
            N  +    +++CA  G V     +H  +  +H       ++ V+ ++LDM+ R   L+ 
Sbjct: 269 PNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLAL 328

Query: 268 ANQYFDEMTEKDLITWNTIIAGYEK-SGSSECLNMFSKMKSE------RFSPNCFTFTSI 320
           A + FD +  K+++ W+ +IAGYE+ S   E L +F +M  E         PN  T  S+
Sbjct: 329 AREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSV 388

Query: 321 IAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEM--SDR 378
           IAAC+ L A      +H   V  GLD +  +A+ALIDM AKCG+I   +++FSEM  S R
Sbjct: 389 IAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTR 448

Query: 379 DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYF 438
            +V+W+SM+   G HG GK A+ELF EM   G  P+ I +++VL+ACSHAGLV++G   F
Sbjct: 449 TVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCF 508

Query: 439 KSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
            SM  DY ++P  + Y C+VDLLGRAG + EA+ +I +MP K D ++WG LL AC  H  
Sbjct: 509 NSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAACHLHGN 568

Query: 498 PNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIE 557
             LG++   ++L L  N +G +++L+N+Y   G+W++  + R  +R  G +K  G S+IE
Sbjct: 569 CKLGEIVEKKILSLDSNSVGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKIPGQSFIE 628

Query: 558 VRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETA 593
           + ++V  F+A D+    ++ +Y  L+ L   + + A
Sbjct: 629 IGNEVYSFMAEDRSHPESEMIYKELDGLDERVRKAA 664



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 122/453 (26%), Positives = 219/453 (48%), Gaps = 39/453 (8%)

Query: 72  MPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNA 131
           +  +D   W  +IA   + N    A T F  M  + V  N FT  ++LKAC  ++ L   
Sbjct: 13  ISHKDTFHWNSLIAKNATQN-PQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPT 71

Query: 132 ALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK--NDVSWTTLITGY 189
             VH    + GL    +   +L+D Y  C  +   A+ VF++M     + VSWT LI+ Y
Sbjct: 72  LQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQ-VFDEMPEGSVDVVSWTALISAY 130

Query: 190 AHSG---NGYGGLGVFKEML-LEGVE---MNPYSFSIAVRACA---STGWVSFGKLIHAA 239
           + +G     +   G  + M   +G E   ++  S    V ACA    +  +  G  +H  
Sbjct: 131 SSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGL 190

Query: 240 VIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFD--EMTEKDLITWNTIIAGYEKSGSSE 297
           V+K+GFG +  + NS++ MY     +  A + F+   + ++D+++WN++I+G+  +G +E
Sbjct: 191 VVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAE 250

Query: 298 -CLNMFSKMKSERFS---PNCFTFTSIIAACATLAALSCGQQVHAGIVRRG----LDGNL 349
             L  F  M SE  S   PN  T  +++ +CA L  +     VH  I  R     +  ++
Sbjct: 251 RALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDV 310

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
            +  AL+DM+A+CGN++ +++IF  +  +++V W++M+ GY      +EA+ LF +M+  
Sbjct: 311 VVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLME 370

Query: 410 G------VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
           G      V+P+ +  ++V+ ACS  G         K      ++ +  I   ++D+  + 
Sbjct: 371 GNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKC 430

Query: 464 GRVKEAYELIKSMPFKPDESV-----WGPLLGA 491
           G ++   ++   M    DES      W  ++GA
Sbjct: 431 GDIEHGRQVFSEM----DESTRTVVSWSSMIGA 459



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 146/300 (48%), Gaps = 18/300 (6%)

Query: 6   LLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEA 65
           LL   A   C +    + + + S + SS+     L+ K   +L T L+  +   G +  A
Sbjct: 277 LLKSCAELGCVETSSWVHEYISS-RHSSL-----LVAKDVVVL-TALLDMHARCGNLALA 329

Query: 66  RTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN------EVNPNAFTLSSVL 119
           R +FD +  ++VV W+ MIAGY   +C  +A  +F +M+        EV PNA TL SV+
Sbjct: 330 REIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVI 389

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM--KWK 177
            AC  + +  +A+++H  A+  GL+    + ++L+D+ A C   +++ R VF++M    +
Sbjct: 390 AACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCG-DIEHGRQVFSEMDESTR 448

Query: 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIH 237
             VSW+++I      G G   L +F EM   G E N  ++   + AC+  G V  GK   
Sbjct: 449 TVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCF 508

Query: 238 AAVIK-HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLITWNTIIAGYEKSGS 295
            ++ K +G          ++D+  R   L +A+     M  K DL  W +++A     G+
Sbjct: 509 NSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAACHLHGN 568



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 74/138 (53%), Gaps = 2/138 (1%)

Query: 271 YFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAAL 330
           Y   ++ KD   WN++IA          L  F++M++     N FTF +++ ACA L  L
Sbjct: 9   YHCSISHKDTFHWNSLIAKNATQNPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRL 68

Query: 331 SCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR--DLVTWTSMMI 388
               QVHA + R GL  +   A AL+D Y KCG+   + ++F EM +   D+V+WT+++ 
Sbjct: 69  LPTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALIS 128

Query: 389 GYGAHGHGKEAIELFDEM 406
            Y ++G   EA + F  M
Sbjct: 129 AYSSNGCVDEAFKAFGRM 146


>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
 gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 172/486 (35%), Positives = 291/486 (59%), Gaps = 3/486 (0%)

Query: 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFND 173
           T  +++ AC G+KS+     +    +  G E   Y+ N ++ ++  C + +D  RL F++
Sbjct: 134 TYDALINACIGLKSIRGVKRLCNYMVDNGFEPDQYMRNRVLLMHVKCGMMIDACRL-FDE 192

Query: 174 MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG 233
           M  +N VSW T+I+GY  SGN      +F  M  E  +  P +F+  +RA A    +  G
Sbjct: 193 MPARNAVSWGTIISGYVDSGNYVEAFRLFILMREEFYDCGPRTFATMIRASAGLEIIFPG 252

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
           + +H+  IK G G ++ V  +++DMY +   L DA+  FDEM +K ++ WN+IIAGY   
Sbjct: 253 RQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDEMPDKTIVGWNSIIAGYALH 312

Query: 294 G-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
           G S E L+++ +M+      + FTF+ II  C+ LA+++  +QVHA +VR G   ++   
Sbjct: 313 GYSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQVHASLVRNGFGLDVVAN 372

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
            AL+D Y+K G + D++ +F  MS R++++W +++ GYG HGHG+EAI++F++M++ G+ 
Sbjct: 373 TALVDFYSKWGKVDDARHVFDRMSCRNIISWNALIAGYGNHGHGEEAIDMFEKMLREGMM 432

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471
           P+ + F+AVL+ACS +GL + G + F+SM  D+ V P    + C+++LLGR G + EAY 
Sbjct: 433 PNHVTFLAVLSACSISGLFERGWEIFQSMTRDHKVKPRAMHFACMIELLGREGLLDEAYA 492

Query: 472 LIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK 531
           LI+  PF+P  ++W  LL AC+ H    LGK AA ++  ++P  +  YI+L NIY + GK
Sbjct: 493 LIRKAPFQPTANMWAALLRACRVHGNLELGKFAAEKLYGMEPEKLSNYIVLLNIYNSSGK 552

Query: 532 WEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNE 591
            +E A   + ++  G +     SWIEV ++   F++ DK     + V G ++ L+ ++++
Sbjct: 553 LKEAADVFQTLKRKGLRMLPACSWIEVNNQPHAFLSGDKHHVQIEKVVGKVDELMLNISK 612

Query: 592 TAYEPD 597
             Y P+
Sbjct: 613 LGYVPE 618



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 120/424 (28%), Positives = 219/424 (51%), Gaps = 42/424 (9%)

Query: 60  GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119
           G++ +A  LFDEMP R+ VSW  +I+GY     + +A+ +F+ M     +    T ++++
Sbjct: 181 GMMIDACRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLFILMREEFYDCGPRTFATMI 240

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179
           +A  G++ +     +H  AIK GL   I+V  +L+D+Y+ C  S+++A  VF++M  K  
Sbjct: 241 RASAGLEIIFPGRQLHSCAIKAGLGQDIFVSCALIDMYSKCG-SLEDAHCVFDEMPDKTI 299

Query: 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAA 239
           V W ++I GYA  G     L ++ EM   GV+M+ ++FSI +R C+    V+  K +HA+
Sbjct: 300 VGWNSIIAGYALHGYSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQVHAS 359

Query: 240 VIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSEC 298
           ++++GFG ++    +++D Y ++  + DA   FD M+ +++I+WN +IAGY   G   E 
Sbjct: 360 LVRNGFGLDVVANTALVDFYSKWGKVDDARHVFDRMSCRNIISWNALIAGYGNHGHGEEA 419

Query: 299 LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDM 358
           ++MF KM  E   PN  TF ++++AC+            +G+  RG +            
Sbjct: 420 IDMFEKMLREGMMPNHVTFLAVLSACSI-----------SGLFERGWE------------ 456

Query: 359 YAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI--ELFDEMVKSGVRPDRI 416
                       IF  M+    V   +M         G+E +  E +  + K+  +P   
Sbjct: 457 ------------IFQSMTRDHKVKPRAMHFACMIELLGREGLLDEAYALIRKAPFQPTAN 504

Query: 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK-EIYGCVVDLLGRAGRVKEAYELIKS 475
           ++ A+L AC   G ++ G   F +   Y + P K   Y  ++++   +G++KEA ++ ++
Sbjct: 505 MWAALLRACRVHGNLELG--KFAAEKLYGMEPEKLSNYIVLLNIYNSSGKLKEAADVFQT 562

Query: 476 MPFK 479
           +  K
Sbjct: 563 LKRK 566



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 149/291 (51%), Gaps = 2/291 (0%)

Query: 206 LLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCL 265
           L +G  +   ++   + AC     +   K +   ++ +GF  +  + N +L M+ +   +
Sbjct: 124 LEDGFHVGYSTYDALINACIGLKSIRGVKRLCNYMVDNGFEPDQYMRNRVLLMHVKCGMM 183

Query: 266 SDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAAC 324
            DA + FDEM  ++ ++W TII+GY  SG+  E   +F  M+ E +     TF ++I A 
Sbjct: 184 IDACRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLFILMREEFYDCGPRTFATMIRAS 243

Query: 325 ATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWT 384
           A L  +  G+Q+H+  ++ GL  ++ ++ ALIDMY+KCG++ D+  +F EM D+ +V W 
Sbjct: 244 AGLEIIFPGRQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDEMPDKTIVGWN 303

Query: 385 SMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDY 444
           S++ GY  HG+ +EA++L+ EM  SGV+ D   F  ++  CS    V    +   S+   
Sbjct: 304 SIIAGYALHGYSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQVHASLVRN 363

Query: 445 NVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
               +      +VD   + G+V +A  +   M  +   S W  L+     H
Sbjct: 364 GFGLDVVANTALVDFYSKWGKVDDARHVFDRMSCRNIIS-WNALIAGYGNH 413



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 99/182 (54%), Gaps = 1/182 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y   G +E+A  +FDEMP++ +V W  +IAGY       +A  ++ EM  + V  +
Sbjct: 274 LIDMYSKCGSLEDAHCVFDEMPDKTIVGWNSIIAGYALHGYSEEALDLYHEMRDSGVKMD 333

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
            FT S +++ C  + S++ A  VH   ++ G    +    +L+D Y+     +D+AR VF
Sbjct: 334 HFTFSIIIRICSRLASVARAKQVHASLVRNGFGLDVVANTALVDFYSKWG-KVDDARHVF 392

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           + M  +N +SW  LI GY + G+G   + +F++ML EG+  N  +F   + AC+ +G   
Sbjct: 393 DRMSCRNIISWNALIAGYGNHGHGEEAIDMFEKMLREGMMPNHVTFLAVLSACSISGLFE 452

Query: 232 FG 233
            G
Sbjct: 453 RG 454



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 43/73 (58%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T L+  Y   G +++AR +FD M  R+++SW  +IAGY +     +A  +F +M+R  + 
Sbjct: 373 TALVDFYSKWGKVDDARHVFDRMSCRNIISWNALIAGYGNHGHGEEAIDMFEKMLREGMM 432

Query: 110 PNAFTLSSVLKAC 122
           PN  T  +VL AC
Sbjct: 433 PNHVTFLAVLSAC 445


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 184/536 (34%), Positives = 305/536 (56%), Gaps = 8/536 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A  LI  Y   G +E+A  +F+ M  RD VSW  +++G      ++ A   F +M  + 
Sbjct: 285 VANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSG 344

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS--MD 165
             P+  ++ +++ A     +L     VH  AI+ GL+ ++ + N+L+D+YA CC    M 
Sbjct: 345 QKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMG 404

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +A   F  M  K+ +SWTT+I GYA +      + +F+++ ++G++++P      +RAC+
Sbjct: 405 HA---FECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACS 461

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
                +F + IH  V K    +++ + N+I+++Y     +  A + F+ +  KD+++W +
Sbjct: 462 GLKSRNFIREIHGYVFKRDL-ADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTS 520

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I     +G   E L +F  +K     P+     S ++A A L++L  G+++H  ++R+G
Sbjct: 521 MITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKG 580

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
                 +A++L+DMYA CG + +S+K+F  +  RDL+ WTSM+   G HG G +AI LF 
Sbjct: 581 FFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFK 640

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRA 463
           +M    V PD I F+A+L ACSH+GL+ EG ++F+ M   Y + P  E Y C+VDLL R+
Sbjct: 641 KMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRS 700

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
             ++EAY  +++MP KP   +W  LLGAC  H    LG+LAA  +L       G Y ++S
Sbjct: 701 NSLEEAYHFVRNMPIKPSSEIWCALLGACHIHSNKELGELAAKELLQSDTENSGKYALIS 760

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVY 579
           NI+AA+G+W +  + R  M+G G KK  G SWIEV +K+  F+A DK    T  +Y
Sbjct: 761 NIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIY 816



 Score =  222 bits (565), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 155/546 (28%), Positives = 277/546 (50%), Gaps = 30/546 (5%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + LAT L+  Y   G + +A  +FDEM ER + SW  ++  + S   + +A  ++ +M  
Sbjct: 79  AFLATKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDMRV 138

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             V  +A T  SVLKAC  +      A +HG+A+K G    ++V N+L+ +Y  C   + 
Sbjct: 139 LGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCG-DLG 197

Query: 166 NARLVFND--MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
            AR++F+   M+ ++ VSW ++I+ +   GN    L +F+ M   GV  N Y+F  A++ 
Sbjct: 198 GARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQG 257

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
                +V  G  IH AV+K    +++ V N+++ MY +   + DA + F+ M  +D ++W
Sbjct: 258 VEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSW 317

Query: 284 NTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           NT+++G  +    S+ LN F  M++    P+  +  ++IAA      L  G++VHA  +R
Sbjct: 318 NTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIR 377

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            GLD N+ + N L+DMYAKC  +      F  M ++DL++WT+++ GY  +    EAI L
Sbjct: 378 NGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINL 437

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK---YFKSMNDYNVNPNKE---IYGCV 456
           F ++   G+  D ++  +VL ACS       GLK   + + ++ Y    +     +   +
Sbjct: 438 FRKVQVKGMDVDPMMIGSVLRACS-------GLKSRNFIREIHGYVFKRDLADIMLQNAI 490

Query: 457 VDLLGRAGRV---KEAYELIKSMPFKPDESVWGPLLGACKEHRLP--NLGKLAALRVLDL 511
           V++ G  G +   + A+E I+S     D   W  ++  C  + LP   L    +L+  ++
Sbjct: 491 VNVYGEVGHIDYARRAFESIRS----KDIVSWTSMITCCVHNGLPVEALELFYSLKQTNI 546

Query: 512 KPNMMGTYIILSNI--YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIAND 569
           +P+ +     LS     ++  K +E   F  I +G   +  +  S +++    CG + N 
Sbjct: 547 QPDSIAIISALSATANLSSLKKGKEIHGFL-IRKGFFLEGPIASSLVDMY-ACCGTVENS 604

Query: 570 KMGSHT 575
           +   H+
Sbjct: 605 RKMFHS 610



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 105/412 (25%), Positives = 205/412 (49%), Gaps = 11/412 (2%)

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMK 175
           S +L  C   K+L     +H + +K  L  S ++   L+ +Y  C  S+ +A  VF++M 
Sbjct: 50  SLLLDLCVAAKALPQGQQLHALLLKSHL--SAFLATKLVLMYGKCG-SLRDAVKVFDEMS 106

Query: 176 WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKL 235
            +   SW  L+  +  SG     + ++K+M + GV ++  +F   ++AC + G    G  
Sbjct: 107 ERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAE 166

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE--MTEKDLITWNTIIAGYEKS 293
           IH   +K G+G  + V N+++ MY +   L  A   FD   M ++D ++WN+II+ +   
Sbjct: 167 IHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAE 226

Query: 294 GSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
           G+  E L++F +M+    + N +TF + +      + +  G  +H  +++     ++ +A
Sbjct: 227 GNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVA 286

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
           NALI MYAKCG + D+ ++F  M  RD V+W +++ G   +    +A+  F +M  SG +
Sbjct: 287 NALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQK 346

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
           PD++  + ++ A   +G + +G +         ++ N +I   +VD+  +   VK     
Sbjct: 347 PDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHA 406

Query: 473 IKSMPFKPDESVWGPLLGACKEHRLP----NLGKLAALRVLDLKPNMMGTYI 520
            + M  K D   W  ++    ++       NL +   ++ +D+ P M+G+ +
Sbjct: 407 FECMHEK-DLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVL 457


>gi|225464746|ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic [Vitis vinifera]
          Length = 825

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 192/559 (34%), Positives = 321/559 (57%), Gaps = 12/559 (2%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + ++ I  Y + G ++ AR +FD   ER+   W  MI GY   NC  +A  +FV+++ +
Sbjct: 256 FVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMES 315

Query: 107 E-VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           E    +  T  S L A   ++ L     +H   +K      + + N+++ +Y+ C  S+ 
Sbjct: 316 EQFVLDDVTFLSALTAISQLQWLELGRQLHAYILKSSTILQVVILNAIIVMYSRCG-SIG 374

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            +  VF++M  ++ V+W T+++ +  +G    GL +   M  +G  ++  + +  +   +
Sbjct: 375 TSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFAMQKQGFMVDSVTLTALLSLAS 434

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNS-ILDMYCRFDCLSDANQYFDEMTE--KDLIT 282
           +      GK  HA +I+HG       M+S ++DMY +   ++ A Q F++ ++  +D  T
Sbjct: 435 NLRSQEIGKQAHAYLIRHGI--QFEGMDSYLIDMYAKSGLITTAQQLFEKNSDYDRDEAT 492

Query: 283 WNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           WN +IAGY ++G S E   +F KM  +   PN  T  SI+ AC  +  +  G+Q+H   +
Sbjct: 493 WNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAI 552

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           R  L+ N+ +  AL+DMY+K G I+ ++ +F+E  +++ VT+T+M+  YG HG G+ A+ 
Sbjct: 553 RCFLNRNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMISSYGQHGMGERALS 612

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLL 460
           LF  M+ SG++PD + F+A+L+ACS+AGLVDEGL+ F+SM  +Y + P+ E Y CV D+L
Sbjct: 613 LFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSAEHYCCVADML 672

Query: 461 GRAGRVKEAYELIKSMPFKPDE-SVWGPLLGACKEHRLPNLGKLAALRVLDLK--PNMMG 517
           GR GRV EAYE +K +  + +   +WG LLGAC+ H    LGK+ A ++L+++   ++ G
Sbjct: 673 GRVGRVVEAYEFVKGLGEEGNTFGIWGSLLGACRIHGEFELGKVVANKLLEMEKGSSLTG 732

Query: 518 TYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQY 577
            +++LSNIYAAEG W+   + RK MR  G  KE G SW+EV   V  F++ D        
Sbjct: 733 YHVLLSNIYAAEGNWDNVDRVRKEMRQKGLMKEAGCSWVEVAGHVNCFMSRDHKHPQCAE 792

Query: 578 VYGVLEMLIRHMNETAYEP 596
           +Y +LE L   M +  Y+P
Sbjct: 793 IYQMLEKLAMEMKDAGYKP 811



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 139/499 (27%), Positives = 238/499 (47%), Gaps = 51/499 (10%)

Query: 59  EGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP----NAFT 114
           +G   +A  LFD +P    V W  +I G   F C+N      +   R   +P    +++T
Sbjct: 50  QGHPHQALHLFDSIPRPTTVLWNTIIIG---FICNNMPIDALLFYARMRASPSPKFDSYT 106

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM---------- 164
            SS LKAC   +SL     +H   ++     S  V NSL+++Y+TC   +          
Sbjct: 107 FSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFN 166

Query: 165 --DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
             D  R VF+ M+ +N V+W T+I+ Y  +        +F+ M+  G+   P SF     
Sbjct: 167 NCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFP 226

Query: 223 ACASTGWVSFGKLIHAAVIKHG--FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           A           +++  V+K G  F  +  V++S + MY    C+  A + FD   E++ 
Sbjct: 227 AVWRMSDYDNANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNT 286

Query: 281 ITWNTIIAGYEKSGSS-ECLNMFSK-MKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
             WNT+I GY ++    E +++F + M+SE+F  +  TF S + A + L  L  G+Q+HA
Sbjct: 287 EVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHA 346

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
            I++      + + NA+I MY++CG+I  S K+FS M +RD+VTW +M+  +  +G   E
Sbjct: 347 YILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDE 406

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACS-----------HAGLVDEGLKYFKSMNDYNVN 447
            + L   M K G   D +   A+L+  S           HA L+  G++ F+ M+ Y   
Sbjct: 407 GLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQ-FEGMDSY--- 462

Query: 448 PNKEIYGCVVDLLGRAGRVKEAYELI-KSMPFKPDESVWGPLLGACKEHRLPNLGKLAAL 506
                   ++D+  ++G +  A +L  K+  +  DE+ W  ++    ++ L   G  A  
Sbjct: 463 --------LIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEG-FAVF 513

Query: 507 RVL---DLKPNMMGTYIIL 522
           R +   +++PN +    IL
Sbjct: 514 RKMIEQNVRPNAVTLASIL 532



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 133/529 (25%), Positives = 259/529 (48%), Gaps = 37/529 (6%)

Query: 5   RLLSYAATFHCHKIPP------IIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFD 58
           R L      HCH +        I+  SL ++  + +   P L              + +D
Sbjct: 118 RSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYL-------------GTAYD 164

Query: 59  EGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSV 118
               +  R +FD M +R+VV+W  MI+ Y       +A+ +F  M+R  + P   +  +V
Sbjct: 165 FNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNV 224

Query: 119 LKACKGMKSLSNAALVHGMAIKEGLE--GSIYVENSLMDVYATC-CISMDNARLVFNDMK 175
             A   M    NA +++G+ +K G +     +V +S + +YA   C+  D AR +F+   
Sbjct: 225 FPAVWRMSDYDNANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCV--DFAREIFDCCL 282

Query: 176 WKNDVSWTTLITGYAHSGNGYGGLGVFKEML-LEGVEMNPYSFSIAVRACASTGWVSFGK 234
            +N   W T+I GY  +      + +F +++  E   ++  +F  A+ A +   W+  G+
Sbjct: 283 ERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGR 342

Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG 294
            +HA ++K      + ++N+I+ MY R   +  + + F  M E+D++TWNT+++ + ++G
Sbjct: 343 QLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNG 402

Query: 295 -SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353
              E L +   M+ + F  +  T T++++  + L +   G+Q HA ++R G+     + +
Sbjct: 403 LDDEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFE-GMDS 461

Query: 354 ALIDMYAKCGNISDSQKIFSEMS--DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411
            LIDMYAK G I+ +Q++F + S  DRD  TW +M+ GY  +G  +E   +F +M++  V
Sbjct: 462 YLIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNV 521

Query: 412 RPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471
           RP+ +   ++L AC+  G +  G +         +N N  +   ++D+  ++G +  A E
Sbjct: 522 RPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNRNVFVGTALLDMYSKSGAITYA-E 580

Query: 472 LIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520
            + +   + +   +  ++ +  +H    +G+    R L L   M+G+ I
Sbjct: 581 NVFAETLEKNSVTYTTMISSYGQH---GMGE----RALSLFHAMLGSGI 622


>gi|297734798|emb|CBI17032.3| unnamed protein product [Vitis vinifera]
          Length = 694

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 198/623 (31%), Positives = 324/623 (52%), Gaps = 33/623 (5%)

Query: 6   LLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSI----------------LA 49
           LL +  T  C   PP +++SL  V+       P   P GP++                L 
Sbjct: 41  LLHHPTTSTC-PFPPHLRRSLPPVRP------PQFSPHGPALHCHMLLHNPNSDFNLFLT 93

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
            +++  Y   GL++ A   FDEM ER++VSWT +++ Y      ++ + VF +M+     
Sbjct: 94  NHVVNMYAKCGLLDYAHQWFDEMLERNIVSWTALVSRYAQHGWPDECFRVFTDMLICH-R 152

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P  F  +SV+    G         VH +A+K   +  +YV N L+ +Y   C   D A  
Sbjct: 153 PTEFAFASVISTSGGDGDCGRQ--VHALAVKTSFDSCVYVGNVLIMMYCRSCGGTDEAWN 210

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSF-SIAVRACASTG 228
           V+  M ++N VSW  +ITG+   G G   L +F +M   G+  +  +  +I    C    
Sbjct: 211 VYEAMGFRNLVSWNFMITGFQVCGCGNRALEIFSQMHFGGIRFDRATLVNIFSCLCGMGD 270

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC-LSDANQYFDEMT-EKDLITWNTI 286
            +     +     K GF S + V   ++  Y      ++D  + F E+   +D+++W  I
Sbjct: 271 GLECCFQLQCLTTKTGFISEIEVPTGLVKAYSSLGGEVNDCYRIFLELDGRQDVVSWTGI 330

Query: 287 IAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           IA + +    E   +F +   E  +P+   F+ ++ ACA LA       V + +++ G +
Sbjct: 331 IAVFAERDPEEAFLLFRQFLRECLAPDRHMFSIVLKACAGLATEGHALTVQSHVLKVGFE 390

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            ++ L NALI   A+CG+++ S++ F ++  RD V+W SM+  Y  HG GKEA++LF +M
Sbjct: 391 DDIVLTNALIHTCARCGSVALSKQAFDKIGSRDTVSWNSMLKAYAMHGQGKEALQLFSQM 450

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGR 465
                +PD   F+A+++ACSHAG+V+EG K F++M N++ + P  + Y C+VD+LGRAGR
Sbjct: 451 ---DAQPDGATFVALISACSHAGMVEEGAKIFEAMSNNHGIVPQLDHYACMVDILGRAGR 507

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           + EA ELI  MP +PD  VW  LLG C++H      KLAA+++ +L PN    YI++SNI
Sbjct: 508 IYEAKELIDKMPMEPDSMVWSALLGGCRKHGETKFAKLAAVKLKELDPNNSLGYILMSNI 567

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           ++  G + E    R+ M     +KE G+SWI+V ++V  F +  +     + +   LE L
Sbjct: 568 FSTNGHFNEARLIRREMERKTVRKEPGLSWIQVGNQVHEFASGGQQHPEKEALCARLEEL 627

Query: 586 IRHMNETAYEPDIDCLIHDLEGE 608
           +R + +  Y P I   +HD+E E
Sbjct: 628 VRQLKDLGYVPQISLALHDIEDE 650


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 200/611 (32%), Positives = 324/611 (53%), Gaps = 21/611 (3%)

Query: 6   LLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEA 65
           LL ++AT    +    I   L    ++S  SD   I         +LI  Y   G  + A
Sbjct: 29  LLKFSATAKSLRFGKTIHAQLVVRNQTSKDSDITQI--------NSLINLYSKCGQSKCA 80

Query: 66  RTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN-----PNAFTLSSVLK 120
           R LFD M +R+VVSW+ ++ GY     H       + + RN V+     PN +  + VL 
Sbjct: 81  RKLFDRMLQRNVVSWSALMMGYL----HKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLS 136

Query: 121 ACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDV 180
            C     +      HG  +K GL    YV+N+L+ +Y+ C   +D+A  + + +   +  
Sbjct: 137 CCADSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRC-FHVDSAMQILDTVPGDDVF 195

Query: 181 SWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAV 240
           S+ ++++    SG       V K M+ E V  +  ++   +  CA    +  G  IHA +
Sbjct: 196 SYNSILSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQL 255

Query: 241 IKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECL 299
           +K G   ++ V ++++D Y +   + +A + FD + +++++ W  ++  Y ++G   E L
Sbjct: 256 LKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETL 315

Query: 300 NMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMY 359
           N+F+KM+ E   PN FTF  ++ ACA+L AL+ G  +H  IV  G   +L + NALI+MY
Sbjct: 316 NLFTKMELEDTRPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLIVGNALINMY 375

Query: 360 AKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFM 419
           +K GNI  S  +FS M +RD++TW +M+ GY  HG GK+A+ +F +M+ +G  P+ + F+
Sbjct: 376 SKSGNIDSSYNVFSNMMNRDVITWNAMICGYSHHGLGKQALLVFQDMMSAGECPNYVTFI 435

Query: 420 AVLTACSHAGLVDEGLKYFKS-MNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK-SMP 477
            VL+AC H  LV EG  YF   M  ++V P  E Y C+V LLGRAG + EA   +K +  
Sbjct: 436 GVLSACVHLALVQEGFYYFDQIMKKFDVEPGLEHYTCMVALLGRAGLLDEAENFMKTTTQ 495

Query: 478 FKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAK 537
            K D   W  LL AC  HR  NLGK     V+ + P+ +GTY +LSN++A   KW+   K
Sbjct: 496 VKWDVVAWRTLLNACHIHRNYNLGKQITETVIQMDPHDVGTYTLLSNMHAKARKWDGVVK 555

Query: 538 FRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPD 597
            RK+M+    KKE G SW+++R+    F++       +  ++  ++ L+  +    Y PD
Sbjct: 556 IRKLMKERNIKKEPGASWLDIRNNTHVFVSEGSNHPESTQIFEKVQQLLAMIKPLGYAPD 615

Query: 598 IDCLIHDLEGE 608
           +  ++HD+E E
Sbjct: 616 VGVVLHDVEDE 626


>gi|297801640|ref|XP_002868704.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
 gi|297314540|gb|EFH44963.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
          Length = 710

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 186/562 (33%), Positives = 309/562 (54%), Gaps = 4/562 (0%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV-RNEV 108
            +LI  Y   G    AR +FD MPER+VVSW  M+ GY +     +   +F  MV  +E 
Sbjct: 73  NSLINLYVKCGETVRARKVFDLMPERNVVSWCAMMKGYQNSGFDFEVLKLFKSMVFSDES 132

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
            PN F  + V K+C     +      HG  +K GL    +V N+L+ +Y+ C  + +  R
Sbjct: 133 RPNEFVATVVFKSCSSSGRIEEGKQFHGCFLKSGLMSHEFVRNTLVYMYSLCSGNGEAIR 192

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            V +D+ + +   +++ ++GY   G    G  V + M  E + ++  ++   +R C++  
Sbjct: 193 -VLDDLPYCDLSVFSSALSGYLECGAFKEGAEVLRRMAKEDLVLDNITYLSCLRLCSNLR 251

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            ++  + IH+ +++ GF S +    +I++MY +   +  A + FD    ++++   TI+ 
Sbjct: 252 DLNLARQIHSRMVRLGFNSEVEASGAIINMYGKCGKVLYAQRVFDNTHAQNIVLNTTIMD 311

Query: 289 GYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
            Y +  S  E LN+FSKM ++   PN +TF   + + A L+ L  G  +H  +++ G   
Sbjct: 312 AYFQDKSFEEALNLFSKMDTKEVPPNEYTFAISLNSIAELSLLKHGDLLHGLVLKSGYRN 371

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           ++ + NAL++MYAK G+I D++K FS M+ RD+VTW +M+ G+  HG G+E +E FD M+
Sbjct: 372 HVMVGNALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMICGFSHHGLGREGLEAFDRMM 431

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS-MNDYNVNPNKEIYGCVVDLLGRAGRV 466
            +G  P+RI F+ VL ACSH G V++GL YF   M  +NV P+ + Y C+V LL +AG  
Sbjct: 432 IAGEIPNRITFIGVLQACSHVGFVEQGLYYFNQLMKKFNVQPDLQHYTCIVGLLSKAGMF 491

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
           K+A + +++ P + D   W  LL AC   R   LGK  A   +   PN  G Y++LSNI+
Sbjct: 492 KDAEDFMRTAPIEWDVVAWRALLNACYVRRNFRLGKKVAEYAIYKYPNDSGVYVLLSNIH 551

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           A   +WE  A+ R +M   G KKE G+SWI +R++   F+A +        +Y  ++ ++
Sbjct: 552 AKSREWEGVAEVRSLMNKRGVKKEPGVSWIGIRNQTHVFLAEENQHPEITLIYAKIKEVL 611

Query: 587 RHMNETAYEPDIDCLIHDLEGE 608
             +    Y PD+  + HD++ E
Sbjct: 612 SKIRPLGYSPDVAGVFHDVDEE 633



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 168/387 (43%), Gaps = 52/387 (13%)

Query: 221 VRACASTGWVSFGKLIHAAVI---KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE 277
           ++ CA++ ++  G+ IH  +I   +     ++  +NS++++Y +      A + FD M E
Sbjct: 38  LKVCANSSYLRTGESIHGHLIVTNQSSRAKDVYQINSLINLYVKCGETVRARKVFDLMPE 97

Query: 278 KDLITWNTIIAGYEKSG-SSECLNMFSKMK-SERFSPNCFTFTSIIAACATLAALSCGQQ 335
           +++++W  ++ GY+ SG   E L +F  M  S+   PN F  T +  +C++   +  G+Q
Sbjct: 98  RNVVSWCAMMKGYQNSGFDFEVLKLFKSMVFSDESRPNEFVATVVFKSCSSSGRIEEGKQ 157

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
            H   ++ GL  +  + N L+ MY+ C    ++ ++  ++   DL  ++S + GY   G 
Sbjct: 158 FHGCFLKSGLMSHEFVRNTLVYMYSLCSGNGEAIRVLDDLPYCDLSVFSSALSGYLECGA 217

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455
            KE  E+   M K  +  D I +++ L  CS+   ++   +    M     N   E  G 
Sbjct: 218 FKEGAEVLRRMAKEDLVLDNITYLSCLRLCSNLRDLNLARQIHSRMVRLGFNSEVEASGA 277

Query: 456 VVDLLGRAGRV-------------------------------KEAYELIKSMPFK---PD 481
           ++++ G+ G+V                               +EA  L   M  K   P+
Sbjct: 278 IINMYGKCGKVLYAQRVFDNTHAQNIVLNTTIMDAYFQDKSFEEALNLFSKMDTKEVPPN 337

Query: 482 ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII---LSNIYAAEGKWEEFAKF 538
           E  +   L +  E  L   G L  L  L LK       ++   L N+YA  G  E+    
Sbjct: 338 EYTFAISLNSIAELSLLKHGDL--LHGLVLKSGYRNHVMVGNALVNMYAKSGSIED---A 392

Query: 539 RKIMRGMGSKKEVGMSWIEVRDKVCGF 565
           RK   GM  +  V  +W      +CGF
Sbjct: 393 RKAFSGMTFRDIV--TW---NTMICGF 414



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 68/125 (54%), Gaps = 4/125 (3%)

Query: 317 FTSIIAACATLAALSCGQQVHAGIV---RRGLDGNLALANALIDMYAKCGNISDSQKIFS 373
              ++  CA  + L  G+ +H  ++   +     ++   N+LI++Y KCG    ++K+F 
Sbjct: 34  LNELLKVCANSSYLRTGESIHGHLIVTNQSSRAKDVYQINSLINLYVKCGETVRARKVFD 93

Query: 374 EMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG-VRPDRIVFMAVLTACSHAGLVD 432
            M +R++V+W +MM GY   G   E ++LF  MV S   RP+  V   V  +CS +G ++
Sbjct: 94  LMPERNVVSWCAMMKGYQNSGFDFEVLKLFKSMVFSDESRPNEFVATVVFKSCSSSGRIE 153

Query: 433 EGLKY 437
           EG ++
Sbjct: 154 EGKQF 158


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 197/584 (33%), Positives = 312/584 (53%), Gaps = 19/584 (3%)

Query: 32  SSIQSDPPLIPK-------------GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVV 78
           + +++DP  +P+              P    + L  +     L+  A +LF   P   + 
Sbjct: 23  APLRTDPRYLPQLHAALIKSGELTGSPKCFHSLLEAAAASPTLLPYAVSLFRLGPRPPLS 82

Query: 79  S--WTVMIAGYTSFNCHNQAWTVFVEMVR-NEVNPNAFTLSSVLKACKGMKSLSNAALVH 135
           +  + V++           A  +FVEM+    V P+  T++  LK+C  M +L     + 
Sbjct: 83  TPCYNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQ 142

Query: 136 GMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNG 195
             A+K GL    +V +SL+ +YA+C   +  A+L+F+ ++    V W  +IT Y  +GN 
Sbjct: 143 AYAVKRGLMADRFVLSSLIHMYASC-RDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNW 201

Query: 196 YGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSI 255
              + +FK ML  GV  +  +    V AC   G    GK +   V + G   N  +M ++
Sbjct: 202 MEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTAL 261

Query: 256 LDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNC 314
           +DMY +   L  A + FD M  +D++ W+ +I+GY ++    E L +FS+M+     PN 
Sbjct: 262 IDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPND 321

Query: 315 FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSE 374
            T  S+++ACA L AL  G+ VH+ I R+ L   + L  AL+D YAKCG I D+ + F  
Sbjct: 322 VTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFES 381

Query: 375 MSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434
           M  ++  TWT+++ G   +G G+EA+ELF  M K+ + P  + F+ VL ACSH+ LV+EG
Sbjct: 382 MPVKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEG 441

Query: 435 LKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACK 493
            ++F SM  DY + P  E YGCVVDLLGRAG + EAY+ I++MP +P+  +W  LL +C 
Sbjct: 442 RRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCA 501

Query: 494 EHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGM 553
            H+   +G+ A  +++ L P+  G YI+LSNIYA+ G+W+  A  RK M+  G +K  G 
Sbjct: 502 VHKNVEIGEEALKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGC 561

Query: 554 SWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPD 597
           S IE+   V  F A D      + +Y  +E +I  +    Y P+
Sbjct: 562 SLIELDGVVVEFFAEDSDHPQLKEIYQKVEEMIDRIKMAGYIPN 605


>gi|225450928|ref|XP_002280725.1| PREDICTED: pentatricopeptide repeat-containing protein At3g05340
           [Vitis vinifera]
          Length = 656

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 189/564 (33%), Positives = 314/564 (55%), Gaps = 6/564 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++  +L+  Y   G + +A  +FD MP +D +SW   I+G          + VF ++  +
Sbjct: 90  VVWNSLLSMYSRCGELRDATKVFDHMPMKDTISWNSRISGLLGNGDIEMGFRVFKQLYES 149

Query: 107 EVNP-NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISM 164
            +   +  TL++VL AC   +    + ++H +    G E  I V N+L+  Y  C C S 
Sbjct: 150 GIYQFDQATLTTVLTACDKPEFCYVSKMIHSLVFLYGYEREITVGNALITSYFRCGCCS- 208

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
            + R VF++M  KN V+WT +I+G +        L +F +M    V+ N  ++  ++ AC
Sbjct: 209 -SGRRVFDEMSEKNVVTWTAVISGLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSSLMAC 267

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           +    +  G+ IH  V K G   +L + ++++DMY +   L DA + F+   E D ++  
Sbjct: 268 SGLQAIREGRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAWKIFESAEEVDEVSMT 327

Query: 285 TIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            I+ G  ++G   E + +F KM       +    ++I+       +L+ G+Q+H+ I+++
Sbjct: 328 VILVGLAQNGFEEESIQVFVKMVKNGVVIDPNMISAILGVFGIDTSLALGKQIHSLIIKK 387

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
               N  + N LI+MY+KCG++ DS KIF  M  R+ V+W SM+  +  HG+G  A++L+
Sbjct: 388 SFGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQRNSVSWNSMIAAFARHGNGSRALQLY 447

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGR 462
           +EM   GV P  + F+++L AC+H GLV++G+ + +SM  DY + P  E Y CVVD++GR
Sbjct: 448 EEMRLEGVWPTDVTFLSLLHACAHVGLVEKGMGFLESMAKDYGIGPRMEHYACVVDMMGR 507

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AG + EA + I+ +P KP   VW  LLGAC  H    +GK AA ++    P     YI+L
Sbjct: 508 AGLLNEAKKFIERLPEKPGILVWQALLGACSIHGNSEMGKYAANQLFLQAPESPAPYILL 567

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           +NIY++EGKW+E A+  K M+ MG  KE G+SWIE+  ++  F+  D+M  H + +YGVL
Sbjct: 568 ANIYSSEGKWKERARTIKKMKDMGVTKETGISWIEIEKQIHSFVVEDRMHPHAEIIYGVL 627

Query: 583 EMLIRHMNETAYEPDIDCLIHDLE 606
             L + M +  Y PD   +++ L+
Sbjct: 628 GELFKLMMDEGYVPDKRFILYYLD 651



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 147/276 (53%), Gaps = 12/276 (4%)

Query: 212 MNPYSFSIAVRACASTGWVSFGKLIHAAVIKH-GF--GSN-------LPVMNSILDMYCR 261
           +N    S  +  C   G++  G  +HA++IK+ GF  G+N       + V NS+L MY R
Sbjct: 42  INQVDISFLLSLCGREGYLHLGSSLHASIIKNFGFLDGNNRDNLRNVIVVWNSLLSMYSR 101

Query: 262 FDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSEC-LNMFSKM-KSERFSPNCFTFTS 319
              L DA + FD M  KD I+WN+ I+G   +G  E    +F ++ +S  +  +  T T+
Sbjct: 102 CGELRDATKVFDHMPMKDTISWNSRISGLLGNGDIEMGFRVFKQLYESGIYQFDQATLTT 161

Query: 320 IIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD 379
           ++ AC         + +H+ +   G +  + + NALI  Y +CG  S  +++F EMS+++
Sbjct: 162 VLTACDKPEFCYVSKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKN 221

Query: 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439
           +VTWT+++ G       +E+++LF +M    V P+ + +++ L ACS    + EG +   
Sbjct: 222 VVTWTAVISGLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREGRQIHG 281

Query: 440 SMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKS 475
            +    V+ +  I   ++D+  + G +++A+++ +S
Sbjct: 282 LVWKLGVHFDLCIESALMDMYSKCGSLEDAWKIFES 317



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 69/131 (52%), Gaps = 11/131 (8%)

Query: 306 KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG--LDGN--------LALANAL 355
           ++ +F+ N    + +++ C     L  G  +HA I++    LDGN        + + N+L
Sbjct: 36  ETSKFAINQVDISFLLSLCGREGYLHLGSSLHASIIKNFGFLDGNNRDNLRNVIVVWNSL 95

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV-RPD 414
           + MY++CG + D+ K+F  M  +D ++W S + G   +G  +    +F ++ +SG+ + D
Sbjct: 96  LSMYSRCGELRDATKVFDHMPMKDTISWNSRISGLLGNGDIEMGFRVFKQLYESGIYQFD 155

Query: 415 RIVFMAVLTAC 425
           +     VLTAC
Sbjct: 156 QATLTTVLTAC 166


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 204/576 (35%), Positives = 323/576 (56%), Gaps = 32/576 (5%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPER--DVVSWTVMIAGYTSFNCHNQAWTVFVEMV-- 104
           A  L+ +Y   G    A  +FDEMPE   DVVSWT +I+ Y+S  C ++A+  F  M   
Sbjct: 90  AAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFXAFGRMRWM 149

Query: 105 -----RNEVNPNAFTLSSVLKACK---GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDV 156
                      +  +L +++ AC    G   L   + VHG+ +K G   S ++ NS++ +
Sbjct: 150 RGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHM 209

Query: 157 YATCCISMDNARLVFNDM--KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG---VE 211
           Y+ C   +  A  VFN +  + ++ VSW +LI+G+  +G     L  F++M+ EG   VE
Sbjct: 210 YSAC-KDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAERALRTFEDMVSEGTSAVE 268

Query: 212 MNPYSFSIAVRACASTGWVSFGKLIHAAVI-KHG---FGSNLPVMNSILDMYCRFDCLSD 267
            N  +    +++CA  G V     +H  +  +H       ++ V+ ++LDM+ R   L+ 
Sbjct: 269 PNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLAL 328

Query: 268 ANQYFDEMTEKDLITWNTIIAGYEK-SGSSECLNMFSKMKSE------RFSPNCFTFTSI 320
           A + FD +  K+++ W+ +IAGYE+ S   E L +F +M  E         PN  T  S+
Sbjct: 329 AREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSV 388

Query: 321 IAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEM--SDR 378
           IAAC+ L A      +H   V  GLD +  +A+ALIDM AKCG+I   +++FSEM  S R
Sbjct: 389 IAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTR 448

Query: 379 DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYF 438
            +V+W+SM+   G HG GK A+ELF EM   G  P+ I +++VL+ACSHAGLV++G   F
Sbjct: 449 TVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCF 508

Query: 439 KSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
            SM  DY ++P  + Y C+VDLLGRAG + EA+ +I +MP K D ++WG LL AC  H  
Sbjct: 509 NSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAACHLHGN 568

Query: 498 PNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIE 557
             LG++   ++L L  N +G +++L+N+Y   G+W++  + R  +R  G +K  G S+IE
Sbjct: 569 CKLGEIVEKKILSLDSNSVGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKIPGQSFIE 628

Query: 558 VRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETA 593
           + ++V  F+A D+    ++ +Y  L+ L   + + A
Sbjct: 629 IGNEVYSFMAEDRSHPESEMIYKELDGLDERVRKAA 664



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 122/453 (26%), Positives = 219/453 (48%), Gaps = 39/453 (8%)

Query: 72  MPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNA 131
           +  +D   W  +IA   + N    A T F  M  + V  N FT  ++LKAC  ++ L   
Sbjct: 13  ISHKDTFHWNSLIAKNATQN-PQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPT 71

Query: 132 ALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK--NDVSWTTLITGY 189
             VH    + GL    +   +L+D Y  C  +   A+ VF++M     + VSWT LI+ Y
Sbjct: 72  LQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQ-VFDEMPEGSVDVVSWTALISAY 130

Query: 190 AHSG---NGYGGLGVFKEML-LEGVE---MNPYSFSIAVRACA---STGWVSFGKLIHAA 239
           + +G     +   G  + M   +G E   ++  S    V ACA    +  +  G  +H  
Sbjct: 131 SSNGCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGL 190

Query: 240 VIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFD--EMTEKDLITWNTIIAGYEKSGSSE 297
           V+K+GFG +  + NS++ MY     +  A + F+   + ++D+++WN++I+G+  +G +E
Sbjct: 191 VVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAE 250

Query: 298 -CLNMFSKMKSERFS---PNCFTFTSIIAACATLAALSCGQQVHAGIVRRG----LDGNL 349
             L  F  M SE  S   PN  T  +++ +CA L  +     VH  I  R     +  ++
Sbjct: 251 RALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDV 310

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
            +  AL+DM+A+CGN++ +++IF  +  +++V W++M+ GY      +EA+ LF +M+  
Sbjct: 311 VVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLME 370

Query: 410 G------VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
           G      V+P+ +  ++V+ ACS  G         K      ++ +  I   ++D+  + 
Sbjct: 371 GNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKC 430

Query: 464 GRVKEAYELIKSMPFKPDESV-----WGPLLGA 491
           G ++   ++   M    DES      W  ++GA
Sbjct: 431 GDIEHGRQVFSEM----DESTRTVVSWSSMIGA 459



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 146/300 (48%), Gaps = 18/300 (6%)

Query: 6   LLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEA 65
           LL   A   C +    + + + S + SS+     L+ K   +L T L+  +   G +  A
Sbjct: 277 LLKSCAELGCVETSSWVHEYISS-RHSSL-----LVAKDVVVL-TALLDMHARCGNLALA 329

Query: 66  RTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN------EVNPNAFTLSSVL 119
           R +FD +  ++VV W+ MIAGY   +C  +A  +F +M+        EV PNA TL SV+
Sbjct: 330 REIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVI 389

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM--KWK 177
            AC  + +  +A+++H  A+  GL+    + ++L+D+ A C   +++ R VF++M    +
Sbjct: 390 AACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCG-DIEHGRQVFSEMDESTR 448

Query: 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIH 237
             VSW+++I      G G   L +F EM   G E N  ++   + AC+  G V  GK   
Sbjct: 449 TVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCF 508

Query: 238 AAVIK-HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLITWNTIIAGYEKSGS 295
            ++ K +G          ++D+  R   L +A+     M  K DL  W +++A     G+
Sbjct: 509 NSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAACHLHGN 568



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 2/138 (1%)

Query: 271 YFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAAL 330
           Y   ++ KD   WN++IA          L  F++M++     N FTF +++ ACA L  L
Sbjct: 9   YXCSISHKDTFHWNSLIAKNATQNPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRL 68

Query: 331 SCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR--DLVTWTSMMI 388
               QVHA + R GL  +   A AL+D Y KCG+   + ++F EM +   D+V+WT+++ 
Sbjct: 69  LPTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALIS 128

Query: 389 GYGAHGHGKEAIELFDEM 406
            Y ++G   EA   F  M
Sbjct: 129 AYSSNGCVDEAFXAFGRM 146


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 193/574 (33%), Positives = 322/574 (56%), Gaps = 13/574 (2%)

Query: 45  PSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           P++ + N LI +Y    LI  AR +FDE+P+ D+VS+  +IA Y           +F E+
Sbjct: 73  PNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEV 132

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
               +  + FTLS V+ AC     L     +H   +  G +    V N+++  Y+     
Sbjct: 133 RELRLGLDGFTLSGVITACGDDVGLVRQ--LHCFVVVCGHDCYASVNNAVLACYSRKGF- 189

Query: 164 MDNARLVFNDMK---WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
           +  AR VF +M     +++VSW  +I        G   +G+F+EM+  G++++ ++ +  
Sbjct: 190 LSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASV 249

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRF-DCLSDANQYFDEMTEKD 279
           + A      +  G+  H  +IK GF  N  V + ++D+Y +    + +  + F+E+T  D
Sbjct: 250 LTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPD 309

Query: 280 LITWNTIIAGYE--KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
           L+ WNT+I+G+   +  S + L  F +M+   F P+  +F  + +AC+ L++ S G+QVH
Sbjct: 310 LVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVH 369

Query: 338 AGIVRRGLDGN-LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHG 396
           A  ++  +  N +++ NAL+ MY+KCGN+ D++++F  M + + V+  SM+ GY  HG  
Sbjct: 370 ALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVE 429

Query: 397 KEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGC 455
            E++ LF+ M++  + P+ I F+AVL+AC H G V+EG KYF  M + + + P  E Y C
Sbjct: 430 VESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAEHYSC 489

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM 515
           ++DLLGRAG++KEA  +I++MPF P    W  LLGAC++H    L   AA   L L+P  
Sbjct: 490 MIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLRLEPYN 549

Query: 516 MGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHT 575
              Y++LSN+YA+  +WEE A  +++MR  G KK+ G SWIE+  KV  F+A D      
Sbjct: 550 AAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMI 609

Query: 576 QYVYGVLEMLIRHMNETAYEPDID-CLIHDLEGE 608
           + ++  +  +++ M +  Y PDI   L+ D E E
Sbjct: 610 KEIHVYMGKMLKKMKQAGYVPDIRWALVKDEEVE 643



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 120/471 (25%), Positives = 216/471 (45%), Gaps = 47/471 (9%)

Query: 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN------- 166
           T  ++LKAC   + L    ++H +  K  +  S Y+ N    +Y+ C  S+ N       
Sbjct: 11  TFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCG-SLHNAQTSFHL 69

Query: 167 ------------------------ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVF 202
                                   AR VF+++   + VS+ TLI  YA  G     L +F
Sbjct: 70  TQYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLF 129

Query: 203 KEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRF 262
           +E+    + ++ ++ S  + AC     V   + +H  V+  G      V N++L  Y R 
Sbjct: 130 EEVRELRLGLDGFTLSGVITACGDD--VGLVRQLHCFVVVCGHDCYASVNNAVLACYSRK 187

Query: 263 DCLSDANQYFDEMTE---KDLITWNTIIA--GYEKSGSSECLNMFSKMKSERFSPNCFTF 317
             LS+A + F EM E   +D ++WN +I   G  + G  E + +F +M       + FT 
Sbjct: 188 GFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREG-MEAVGLFREMVRRGLKVDMFTM 246

Query: 318 TSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC-GNISDSQKIFSEMS 376
            S++ A   +  L  G+Q H  +++ G  GN  + + LID+Y+KC G++ + +K+F E++
Sbjct: 247 ASVLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEIT 306

Query: 377 DRDLVTWTSMMIGYGAHGH-GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGL 435
             DLV W +M+ G+  +    ++ +  F EM ++G RPD   F+ V +ACS+      G 
Sbjct: 307 APDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGK 366

Query: 436 KYFKSMNDYNVNPNK-EIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKE 494
           +        +V  N+  +   +V +  + G V +A  +  +MP     S+   ++    +
Sbjct: 367 QVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSL-NSMIAGYAQ 425

Query: 495 H--RLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMR 543
           H   + +L     +   D+ PN + T+I + +     GK EE  K+  +M+
Sbjct: 426 HGVEVESLRLFELMLEKDIAPNSI-TFIAVLSACVHTGKVEEGQKYFNMMK 475


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 206/614 (33%), Positives = 338/614 (55%), Gaps = 35/614 (5%)

Query: 1   MRTKRLLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEG 60
           MR K ++S+ +         I+    Q+ +    Q+    + +  +I    L+  Y + G
Sbjct: 124 MRDKNIISWNS---------IVAGYFQNKRPQEAQNMFDKMSERNTISWNGLVSGYINNG 174

Query: 61  LIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLK 120
           +I EAR +FD MPER+VVSWT M+ GY      ++A T+F +M    V      L  +L+
Sbjct: 175 MINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQ 234

Query: 121 ACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI-SMDNARLVFNDMKWKND 179
             +    +  A  +  M      E  +    +++  Y  C +  +  AR++F++M  +N 
Sbjct: 235 EGR----IDEACRLFDMMP----EKDVVTRTNMIGGY--CQVGRLVEARMLFDEMPRRNV 284

Query: 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAA 239
           VSWTT+ITGY  +        +F+ M     E N  S++  ++     G+ + G+L  A+
Sbjct: 285 VSWTTMITGYVQNQQVDIARKLFEVM----PEKNEVSWTAMLK-----GYTNCGRLDEAS 335

Query: 240 VIKHGFG-SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-E 297
            + +     ++   N+++  + +   +  A Q FD+M EKD  TW+ +I  YE+ G   +
Sbjct: 336 ELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELD 395

Query: 298 CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALID 357
            L +F  M+ E   PN  +  S+++ CA LA L  G+++HA +VR   D ++ +A+ L+ 
Sbjct: 396 ALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLS 455

Query: 358 MYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIV 417
           MY KCGN++ ++++F   + +D+V W S++ GY  HG G EA+ +F +M  SG+ PD + 
Sbjct: 456 MYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVT 515

Query: 418 FMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
           F+ VL+ACS+ G V +GL+ F SM   Y V    E Y C+VDLLGRAG++ EA +LI+ M
Sbjct: 516 FVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKM 575

Query: 477 PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFA 536
           P + D  +WG LLGAC+ H   +L ++AA ++L L+P   G +I+LSNIYA++G+W++ A
Sbjct: 576 PMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVA 635

Query: 537 KFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMG--SHTQYVYGVLEMLIRHMNETAY 594
           + R+ MR     K  G SWI V  KV  F   D  G   H++ +  +LE L   + E  Y
Sbjct: 636 ELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSE-INRILEWLSGLLREAGY 694

Query: 595 EPDIDCLIHDLEGE 608
            PD   ++HD++ E
Sbjct: 695 YPDQSFVLHDVDEE 708



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 93/194 (47%), Gaps = 23/194 (11%)

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
           N+LI  Y++ G I  ++ +F EM D+++++W S++ GY  +   +EA  +FD+M +    
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNT- 160

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
              I +  +++   + G+++E  + F  M + NV      +  +V    + G + EA  L
Sbjct: 161 ---ISWNGLVSGYINNGMINEAREVFDRMPERNVVS----WTAMVRGYVKEGMISEAETL 213

Query: 473 IKSMPFKPDESVWGPLLGA-CKEHRLPNLGKLAALRVLDLKP--------NMMGTYIILS 523
              MP K   S W  +LG   +E R+       A R+ D+ P        NM+G Y  + 
Sbjct: 214 FWQMPEKNVVS-WTVMLGGLLQEGRIDE-----ACRLFDMMPEKDVVTRTNMIGGYCQVG 267

Query: 524 NIYAAEGKWEEFAK 537
            +  A   ++E  +
Sbjct: 268 RLVEARMLFDEMPR 281


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 206/614 (33%), Positives = 338/614 (55%), Gaps = 35/614 (5%)

Query: 1   MRTKRLLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEG 60
           MR K ++S+ +         I+    Q+ +    Q+    + +  +I    L+  Y + G
Sbjct: 124 MRDKNIISWNS---------IVAGYFQNKRPQEAQNMFDKMSERNTISWNGLVSGYINNG 174

Query: 61  LIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLK 120
           +I EAR +FD MPER+VVSWT M+ GY      ++A T+F +M    V      L  +L+
Sbjct: 175 MINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQ 234

Query: 121 ACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI-SMDNARLVFNDMKWKND 179
             +    +  A  +  M      E  +    +++  Y  C +  +  AR++F++M  +N 
Sbjct: 235 EGR----IDEACRLFDMMP----EKDVVTRTNMIGGY--CQVGRLVEARMLFDEMPRRNV 284

Query: 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAA 239
           VSWTT+ITGY  +        +F+ M     E N  S++  ++     G+ + G+L  A+
Sbjct: 285 VSWTTMITGYVQNQQVDIARKLFEVM----PEKNEVSWTAMLK-----GYTNCGRLDEAS 335

Query: 240 VIKHGFG-SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-E 297
            + +     ++   N+++  + +   +  A Q FD+M EKD  TW+ +I  YE+ G   +
Sbjct: 336 ELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELD 395

Query: 298 CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALID 357
            L +F  M+ E   PN  +  S+++ CA LA L  G+++HA +VR   D ++ +A+ L+ 
Sbjct: 396 ALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLS 455

Query: 358 MYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIV 417
           MY KCGN++ ++++F   + +D+V W S++ GY  HG G EA+ +F +M  SG+ PD + 
Sbjct: 456 MYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVT 515

Query: 418 FMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
           F+ VL+ACS+ G V +GL+ F SM   Y V    E Y C+VDLLGRAG++ EA +LI+ M
Sbjct: 516 FVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKM 575

Query: 477 PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFA 536
           P + D  +WG LLGAC+ H   +L ++AA ++L L+P   G +I+LSNIYA++G+W++ A
Sbjct: 576 PMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVA 635

Query: 537 KFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMG--SHTQYVYGVLEMLIRHMNETAY 594
           + R+ MR     K  G SWI V  KV  F   D  G   H++ +  +LE L   + E  Y
Sbjct: 636 ELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSE-INRILEWLSGLLREAGY 694

Query: 595 EPDIDCLIHDLEGE 608
            PD   ++HD++ E
Sbjct: 695 YPDQSFVLHDVDEE 708



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 93/194 (47%), Gaps = 23/194 (11%)

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
           N+LI  Y++ G I  ++ +F EM D+++++W S++ GY  +   +EA  +FD+M +    
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNT- 160

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
              I +  +++   + G+++E  + F  M + NV      +  +V    + G + EA  L
Sbjct: 161 ---ISWNGLVSGYINNGMINEAREVFDRMPERNVVS----WTAMVRGYVKEGMISEAETL 213

Query: 473 IKSMPFKPDESVWGPLLGA-CKEHRLPNLGKLAALRVLDLKP--------NMMGTYIILS 523
              MP K   S W  +LG   +E R+       A R+ D+ P        NM+G Y  + 
Sbjct: 214 FWQMPEKNVVS-WTVMLGGLLQEGRIDE-----ACRLFDMMPEKDVVTRTNMIGGYCQVG 267

Query: 524 NIYAAEGKWEEFAK 537
            +  A   ++E  +
Sbjct: 268 RLVEARMLFDEMPR 281


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 200/587 (34%), Positives = 318/587 (54%), Gaps = 34/587 (5%)

Query: 52  LIKSYFDEGLIEEARTLF--DEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           L+  Y   GL+++A+ LF        D+V+W  MI+         +A  V  +MV   V 
Sbjct: 198 LLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNTMISLLVQGGRCEEAVQVLYDMVALGVR 257

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG-LEGSIYVENSLMDVYATCCISMDNAR 168
           P+  T +S L AC  ++ L     VH   +K+  L  + +V ++L+D+YA+    + +AR
Sbjct: 258 PDGVTFASALPACSRLELLGVGREVHAFVLKDDDLAANSFVASALVDMYASN-EQVSHAR 316

Query: 169 LVFNDMKWKNDVS---WTTLITGYA-HSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAVRA 223
            VF DM  ++      W  +I GYA H G     + +F  M  E G   +  + +  + A
Sbjct: 317 RVF-DMVPEHGRQLGMWNAMICGYAQHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPA 375

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           CA +   +  + +H  V+K    SN  V N+++DMY R   + +A+  F  +  +D+++W
Sbjct: 376 CARSEVFTGKEAVHGYVVKRDMASNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSW 435

Query: 284 NTIIAGYEKSG-SSECLNMFSKMK--------------------SERFSPNCFTFTSIIA 322
           NT+I G    G  SE   +  +M+                     +R  PN  T  +++ 
Sbjct: 436 NTLITGCIVQGLISEAFQLVREMQLPSSAASGETMLEGDDTSVDGQRCMPNNITLMTLLP 495

Query: 323 ACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVT 382
            CA LAA + G+++H   VR  L+ +LA+ +AL+DMYAKCG ++ ++ +F  +  R+++T
Sbjct: 496 GCAVLAAPARGKEIHGYAVRHALESDLAVGSALVDMYAKCGCLALARAVFDRLPRRNVIT 555

Query: 383 WTSMMIGYGAHGHGKEAIELFDEMVKSG-VRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441
           W  +++ YG HG G EA+ LFD MV +G   P+ + F+A L ACSH+GLVD GL+ F+ M
Sbjct: 556 WNVLIMAYGMHGLGDEALALFDRMVANGEATPNEVTFIAALAACSHSGLVDRGLELFQGM 615

Query: 442 -NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDESVWGPLLGACKEHRLPN 499
             DY   P   ++ CVVD+LGRAGR+ EAY +I SM P +   S W  +LGAC+ HR   
Sbjct: 616 KRDYGFEPTPYLHACVVDVLGRAGRLDEAYGIISSMAPGEHQVSAWSTMLGACRLHRNVK 675

Query: 500 LGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVR 559
           LG++AA R+ +L+P+    Y++L NIY+A G WE   + R +MR  G  KE G SWIE+ 
Sbjct: 676 LGRIAAERLFELEPDEASHYVLLCNIYSAAGLWENSTEVRGMMRQRGVAKEPGCSWIELD 735

Query: 560 DKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
             +  F+A +     +  V+  ++ L   M    Y PD  C++HD++
Sbjct: 736 GAIHRFMAGESAHPESAQVHAHMDALWERMRREGYVPDTSCVLHDVD 782



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 173/371 (46%), Gaps = 30/371 (8%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPE--RDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           S +A+ L+  Y     +  AR +FD +PE  R +  W  MI GY      ++        
Sbjct: 296 SFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAIELFSR 355

Query: 104 VRNEVN--PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
           +  E    P+  T++ VL AC   +  +    VHG  +K  +  + +V+N+LMD+YA   
Sbjct: 356 MEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQNALMDMYARLG 415

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEM-----------LLEGV 210
             MD A  +F  +  ++ VSW TLITG    G       + +EM           +LEG 
Sbjct: 416 -RMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQLVREMQLPSSAASGETMLEGD 474

Query: 211 EM---------NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR 261
           +          N  +    +  CA     + GK IH   ++H   S+L V ++++DMY +
Sbjct: 475 DTSVDGQRCMPNNITLMTLLPGCAVLAAPARGKEIHGYAVRHALESDLAVGSALVDMYAK 534

Query: 262 FDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSE-RFSPNCFTFTS 319
             CL+ A   FD +  +++ITWN +I  Y   G   E L +F +M +    +PN  TF +
Sbjct: 535 CGCLALARAVFDRLPRRNVITWNVLIMAYGMHGLGDEALALFDRMVANGEATPNEVTFIA 594

Query: 320 IIAACATLAALSCGQQVHAGIVRR-GLDGNLALANALIDMYAKCGNISDSQKIFSEMS-- 376
            +AAC+    +  G ++  G+ R  G +    L   ++D+  + G + ++  I S M+  
Sbjct: 595 ALAACSHSGLVDRGLELFQGMKRDYGFEPTPYLHACVVDVLGRAGRLDEAYGIISSMAPG 654

Query: 377 DRDLVTWTSMM 387
           +  +  W++M+
Sbjct: 655 EHQVSAWSTML 665



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 106/211 (50%), Gaps = 14/211 (6%)

Query: 278 KDLITWNTIIAG---YEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLA--ALSC 332
           +D +++N++I+    + + G +  L+    M ++    + FT  S++ AC+ LA      
Sbjct: 116 RDAVSYNSLISALCLFRRWGHA--LDALRDMLADH-EVSSFTLVSVLLACSHLADQGHRL 172

Query: 333 GQQVHAGIVRRGL--DGNLALA-NALIDMYAKCGNISDSQKIF--SEMSDRDLVTWTSMM 387
           G++ HA  ++ G    G      NAL+ MYA+ G + D+Q++F  S     DLVTW +M+
Sbjct: 173 GREAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNTMI 232

Query: 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK-SMNDYNV 446
                 G  +EA+++  +MV  GVRPD + F + L ACS   L+  G +     + D ++
Sbjct: 233 SLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLKDDDL 292

Query: 447 NPNKEIYGCVVDLLGRAGRVKEAYELIKSMP 477
             N  +   +VD+     +V  A  +   +P
Sbjct: 293 AANSFVASALVDMYASNEQVSHARRVFDMVP 323


>gi|357474955|ref|XP_003607763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508818|gb|AES89960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 871

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 177/522 (33%), Positives = 302/522 (57%), Gaps = 11/522 (2%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S + T+L+ +Y   G + +AR +FDE+P+R VVSWT MI  Y    C  +   +F  M  
Sbjct: 169 SFVLTSLVDAYSKCGKLRDARKVFDEIPDRSVVSWTSMIVAYVQNECAEEGLMLFNRMRE 228

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             ++ N FT+ S++ AC  +  L     VHG  IK G+E + Y+  SL+++Y  C   + 
Sbjct: 229 GFLDGNVFTVGSLVTACTKLGCLHQGKWVHGYVIKNGIEINSYLATSLLNMYVKCG-DIG 287

Query: 166 NARLVFNDMKWK------NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
           +AR VF++          + V WT +I GY   G     L +F +     +  N  + + 
Sbjct: 288 DARSVFDEFSVSTCGGGDDLVFWTAMIVGYTQRGYPQAALELFTDKKWYRILPNSVTLAS 347

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
            + ACA    +  GKL+H  V+K+G   +  + NS++DMY +   + DA+  F    +KD
Sbjct: 348 LLSACAQLENIVMGKLLHVLVVKYGL-DDTSLRNSLVDMYAKCGLIPDAHYVFATTVDKD 406

Query: 280 LITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           +++WN++I+GY +SGS+ E L++F++M+ E F P+  T   +++ACA++ A   G  +H 
Sbjct: 407 VVSWNSVISGYAQSGSAYEALDLFNRMRMESFLPDAVTVVGVLSACASVGAHQIGLSLHG 466

Query: 339 GIVRRGL-DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
             ++ GL   ++ +  AL++ YAKCG+ + ++ +F  M +++ VTW +M+ G G  G G 
Sbjct: 467 FALKYGLVSSSIYVGTALLNFYAKCGDATSARMVFDGMGEKNAVTWAAMIGGCGMQGDGV 526

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCV 456
            ++ LF +M+K  + P+ +VF  +L ACSH+G+V+EGL  F  M  + N  P+ + Y C+
Sbjct: 527 GSLALFRDMLKEELVPNEVVFTTLLAACSHSGMVEEGLMIFDFMCKELNFVPSMKHYACM 586

Query: 457 VDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMM 516
           VDLL RAG ++EA + I  MP +P   V+G  L  C  H   + G++A  R+L+L P+  
Sbjct: 587 VDLLARAGNLQEALDFIDKMPVQPGVGVFGAFLHGCGLHSNFDFGEVAIRRMLELHPDQA 646

Query: 517 GTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEV 558
             Y+++SN+YA++G+W    + R++++  G  K  G+S +E+
Sbjct: 647 CYYVLISNLYASDGRWGMVKEVREMIKQRGLNKVPGVSLVEM 688


>gi|302142249|emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 196/583 (33%), Positives = 321/583 (55%), Gaps = 26/583 (4%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L  +L+  Y   G ++ A  LF+ +  +DVVSW  MIA          A  +F  M++ E
Sbjct: 261 LWNSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEGENALGLFRRMLKVE 320

Query: 108 --VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             V PN  T  S+L A  G+ +L     +H    +  LE    + NSL+  Y+ C   + 
Sbjct: 321 PPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTSITNSLITFYSKC-REVG 379

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            AR +F  +  ++ +SW +++ GY  +        +FK M+L G+E + +S +I   A +
Sbjct: 380 KAREIFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLSGIEPDSHSLTIIFNAAS 439

Query: 226 --STGWVSF--GKLIHAAVIKH--GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
             S+G + F  GK IH  +++     G +L V N+IL MY +F+ ++DA + F  M  +D
Sbjct: 440 RDSSGLIYFRRGKEIHGYILRRITPGGVSLSVSNAILKMYAKFNRIADAEKIFKGMKNRD 499

Query: 280 LITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
             +WN ++ GY ++   E  L +F  +  + F  +  + + ++ +C  L +L  G+Q HA
Sbjct: 500 SYSWNAMMDGYSRNAKFEDVLMIFLDILKQGFPLDHVSLSILLTSCGRLVSLQLGKQFHA 559

Query: 339 GIVRRGLDGN--------LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY 390
            +V +  +G         L++ NALI MY+KCG+I D+ ++F +M  +D+ +WT+M+ G 
Sbjct: 560 -VVAKLFNGQDCPHQDSLLSINNALISMYSKCGSIKDAAQVFLKMERKDVFSWTAMITGC 618

Query: 391 GAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPN 449
             HG   EA++LF+ M   G++P+++ F+A+L AC+H GLV EG  YF SM NDY ++P+
Sbjct: 619 AHHGLAVEALQLFERMKTDGIKPNQVTFLALLMACAHGGLVQEGSYYFDSMYNDYGLSPS 678

Query: 450 KEIYGCVVDLLGRAGRVKEAYELIKS--MPFKPDE----SVWGPLLGACKEHRLPNLGKL 503
            E Y C++DL GR+G+   A  L++     FKP      ++W  LLGAC   +  +LG  
Sbjct: 679 IEHYACMIDLFGRSGQFDRAKSLVEFGITLFKPYHDDILNLWKVLLGACHASKQLDLGVE 738

Query: 504 AALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVC 563
           AA ++L+L+P    TYI+L+N+YA+ G WE+  K RK MR  G +KEVG SWI+  ++  
Sbjct: 739 AATKILELEPEDEATYILLANLYASSGLWEDAIKVRKAMRDKGLRKEVGCSWIDTGNRRH 798

Query: 564 GFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
            F+A D      + +Y  L  L        Y P  + ++HD++
Sbjct: 799 VFVAGDVYHPQRKEIYEKLAQLNYSCRRMGYVPMTELVLHDVD 841



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 127/441 (28%), Positives = 231/441 (52%), Gaps = 23/441 (5%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           A+ LFD  P RDV+SW+ +IA Y+      QA+ +F +M+   + PN F+L+S+LK    
Sbjct: 74  AQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLKVSCS 133

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW--KNDVSW 182
              +     +HG +I+ G      +  + + +Y+ C + +++A+ VF++      + + W
Sbjct: 134 TGEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGV-LEDAQRVFDETSLLALDILLW 192

Query: 183 TTLITGYAHSGNGYGGLGVFKEMLLEG-VEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
            ++I  Y   G     L +F +M+  G V     +++  V AC S+G   +G ++H  +I
Sbjct: 193 NSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMVHGRII 252

Query: 242 KHGF-GSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CL 299
           K G   +NL   NS++  Y +   L  A+Q F+ ++ KD+++WN +IA  E+ G  E  L
Sbjct: 253 KAGLEATNL--WNSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEGENAL 310

Query: 300 NMFSKM-KSE-RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALID 357
            +F +M K E    PN  TF S+++A + L+AL CG+++HA I R  L+ + ++ N+LI 
Sbjct: 311 GLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTSITNSLIT 370

Query: 358 MYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIV 417
            Y+KC  +  +++IF  +  RD+++W SM+ GY  +       ++F  M+ SG+ PD   
Sbjct: 371 FYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLSGIEPDSHS 430

Query: 418 FMAVLTACSHAGLVDEGLKYF---KSMNDY---NVNP---NKEIYGCVVDLLGRAGRVKE 468
              +  A S       GL YF   K ++ Y    + P   +  +   ++ +  +  R+ +
Sbjct: 431 LTIIFNAASRD---SSGLIYFRRGKEIHGYILRRITPGGVSLSVSNAILKMYAKFNRIAD 487

Query: 469 AYELIKSMPFKPDESVWGPLL 489
           A ++ K M  + D   W  ++
Sbjct: 488 AEKIFKGMKNR-DSYSWNAMM 507



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 175/335 (52%), Gaps = 8/335 (2%)

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A+ +F++   ++ +SW+ LI  Y+  GN     G+F++M+ EG++ N +S +  ++   S
Sbjct: 74  AQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLKVSCS 133

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE--MTEKDLITWN 284
           TG +   + +H   I+ GFG +  +  + + MY R   L DA + FDE  +   D++ WN
Sbjct: 134 TGEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALDILLWN 193

Query: 285 TIIAGYEKSGS-SECLNMFSKMKS-ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           +IIA Y   G   E L +F KM S    +P   T+ S++ AC +      G  VH  I++
Sbjct: 194 SIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMVHGRIIK 253

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            GL+    L N+L+  Y KCGN+  + ++F  +S +D+V+W +M+      G G+ A+ L
Sbjct: 254 AGLEAT-NLWNSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEGENALGL 312

Query: 403 FDEMVK--SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLL 460
           F  M+K    V+P+R+ F+++L+A S    +  G +    +   ++  +  I   ++   
Sbjct: 313 FRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTSITNSLITFY 372

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            +   V +A E+ + +  + D   W  +L   +++
Sbjct: 373 SKCREVGKAREIFERLLLR-DIISWNSMLAGYEQN 406



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 140/301 (46%), Gaps = 24/301 (7%)

Query: 243 HGFGSNLPVMNSILDMYC-------RFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS 295
           HGF S      S    +        R  C   A Q FD    +D+I+W+ +IA Y + G+
Sbjct: 45  HGFSSQFIFRCSACSKFLVSQSEHERLKC---AQQLFDNFPNRDVISWSALIAAYSRCGN 101

Query: 296 -SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
            ++   +F KM  E   PN F+  S++    +   +   +Q+H   +R G   +  +  A
Sbjct: 102 FAQAFGLFQKMMGEGLQPNGFSLASLLKVSCSTGEIGLCRQLHGWSIRTGFGLDSGIRAA 161

Query: 355 LIDMYAKCGNISDSQKIFSEMS--DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG-V 411
            I MY++CG + D+Q++F E S    D++ W S++  Y  HG   E + LF +MV  G V
Sbjct: 162 WITMYSRCGVLEDAQRVFDETSLLALDILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVV 221

Query: 412 RPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE---IYGCVVDLLGRAGRVKE 468
            P  + + +V+ AC  +G  +E  KY   ++   +    E   ++  +V   G+ G ++ 
Sbjct: 222 APTELTYASVVNACGSSG--EE--KYGAMVHGRIIKAGLEATNLWNSLVTFYGKCGNLQH 277

Query: 469 AYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAAL-RVLDLKPNMMGTYIILSNIYA 527
           A +L + +  + D   W  ++ A  E R      L    R+L ++P +    +   ++ +
Sbjct: 278 ASQLFERIS-RKDVVSWNAMIAA-NEQRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLS 335

Query: 528 A 528
           A
Sbjct: 336 A 336


>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 833

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 195/587 (33%), Positives = 323/587 (55%), Gaps = 23/587 (3%)

Query: 5   RLLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEE 64
             +S+    HC  I            K   + DP         + T+L+  Y    +IE 
Sbjct: 255 EFVSFGKQVHCDAI------------KVGFEDDP--------YVHTSLLTMYGKCQMIES 294

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           A  +F+E+P++++  W  +I+ Y        A  ++ +M    V  ++FT+ +VL +   
Sbjct: 295 AEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSM 354

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTT 184
                   L+H   +K  L+ SI ++++L+ +Y+    S + A  +F+ MK ++ V+W +
Sbjct: 355 AGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSKFGDS-NYANSIFSTMKERDVVAWGS 413

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG 244
           +I+G+  +      L  F+ M  + V+ +    +  + AC     V  G  IH  VIK G
Sbjct: 414 VISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIISACTGLEKVDLGCTIHGFVIKSG 473

Query: 245 FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFS 303
              ++ V +S+LDMY +F     A   F +M  K+L+ WN+II+ Y ++   +  +N+FS
Sbjct: 474 LQLDVFVASSLLDMYSKFGFPERAGNIFSDMPLKNLVAWNSIISCYCRNNLPDLSINLFS 533

Query: 304 KMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG 363
           ++      P+  +FTS++AA +++AAL  G+ VH  +VR  +  +L + N LIDMY KCG
Sbjct: 534 QVLRNDLYPDSVSFTSVLAAISSVAALLKGKSVHGYLVRLWIPFDLQVENTLIDMYIKCG 593

Query: 364 NISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLT 423
            +  +Q IF  +S+++LV W SM+ GYG+HG   +AIELFDEM  SG++PD + F+++L+
Sbjct: 594 LLKYAQHIFERISEKNLVAWNSMIGGYGSHGECSKAIELFDEMRSSGIKPDDVTFLSLLS 653

Query: 424 ACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDE 482
           +C+H+GL++EGL  F+ M   + + P  E Y  +VDL GRAG + +AY  +K+MP +PD 
Sbjct: 654 SCNHSGLIEEGLHLFEMMKMKFGIEPRMEHYVNIVDLYGRAGCLGDAYSFVKNMPVEPDR 713

Query: 483 SVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIM 542
           S+W  LL +CK H    LG++ A ++L+++P+    Y+ L N+Y     W+  A  R  M
Sbjct: 714 SIWLSLLCSCKIHLNLELGEMVANKLLNMEPSKGSNYVQLLNLYGEAELWDRTANLRASM 773

Query: 543 RGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHM 589
           +  G KK  G SWIEVR+KV  F + D     T  +Y  L  L R+M
Sbjct: 774 KEKGLKKTPGCSWIEVRNKVDVFYSGDCSSPITTEIYDTLSSLKRNM 820



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 127/454 (27%), Positives = 233/454 (51%), Gaps = 12/454 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPER-DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           L T LI +YF  G   EAR LF ++ +R ++V+W VMI G+        +   ++     
Sbjct: 176 LETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWNVMIGGFGENGLWENSLEYYLLAKTE 235

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V   + + +  L AC   + +S    VH  AIK G E   YV  SL+ +Y  C + +++
Sbjct: 236 NVKVVSSSFTCTLSACGQGEFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQM-IES 294

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  VFN++  K    W  LI+ Y  +G  Y  L ++K+M L  V  + ++    + + + 
Sbjct: 295 AEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSM 354

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G    G+LIH  ++K    S++ + +++L MY +F   + AN  F  M E+D++ W ++
Sbjct: 355 AGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSKFGDSNYANSIFSTMKERDVVAWGSV 414

Query: 287 IAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+G+ +     E L+ F  M+++   P+     SII+AC  L  +  G  +H  +++ GL
Sbjct: 415 ISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIISACTGLEKVDLGCTIHGFVIKSGL 474

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             ++ +A++L+DMY+K G    +  IFS+M  ++LV W S++  Y  +     +I LF +
Sbjct: 475 QLDVFVASSLLDMYSKFGFPERAGNIFSDMPLKNLVAWNSIISCYCRNNLPDLSINLFSQ 534

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP----NKEIYGCVVDLLG 461
           ++++ + PD + F +VL A S    + +G    KS++ Y V      + ++   ++D+  
Sbjct: 535 VLRNDLYPDSVSFTSVLAAISSVAALLKG----KSVHGYLVRLWIPFDLQVENTLIDMYI 590

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           + G +K A  + + +  K +   W  ++G    H
Sbjct: 591 KCGLLKYAQHIFERISEK-NLVAWNSMIGGYGSH 623



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 126/487 (25%), Positives = 229/487 (47%), Gaps = 31/487 (6%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPER-----DVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           + ++LI  Y   G   +A  +FD++P+      DV  W  +I GY  F    +    F  
Sbjct: 90  ITSSLINIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGR 149

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M            SS  K  K          +H   ++  L    ++E +L+D Y  C  
Sbjct: 150 MQ-----------SSGYKEGKQ---------IHSYIVRNMLNFDPFLETALIDTYFKCGR 189

Query: 163 SMDNARLVFNDMKWK-NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
             + AR +F  +K + N V+W  +I G+  +G     L  +     E V++   SF+  +
Sbjct: 190 PTE-ARYLFKKLKDRSNIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKVVSSSFTCTL 248

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
            AC    +VSFGK +H   IK GF  +  V  S+L MY +   +  A + F+E+ +K++ 
Sbjct: 249 SACGQGEFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIE 308

Query: 282 TWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
            WN +I+ Y  +G + + L ++ +MK      + FT  +++ + +       G+ +H  I
Sbjct: 309 LWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEI 368

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           V+R L  ++ + +AL+ MY+K G+ + +  IFS M +RD+V W S++ G+  +   KEA+
Sbjct: 369 VKRPLQSSITIQSALLTMYSKFGDSNYANSIFSTMKERDVVAWGSVISGFCQNRKYKEAL 428

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLL 460
           + F  M    V+PD  +  ++++AC+    VD G      +    +  +  +   ++D+ 
Sbjct: 429 DFFRAMEADLVKPDSDIMASIISACTGLEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMY 488

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVL--DLKPNMMGT 518
            + G  + A  +   MP K +   W  ++     + LP+L      +VL  DL P+ +  
Sbjct: 489 SKFGFPERAGNIFSDMPLK-NLVAWNSIISCYCRNNLPDLSINLFSQVLRNDLYPDSVSF 547

Query: 519 YIILSNI 525
             +L+ I
Sbjct: 548 TSVLAAI 554



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 95/400 (23%), Positives = 188/400 (47%), Gaps = 30/400 (7%)

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
           ++ V    FT  S+LKAC  + +L     +H   I  GL    Y+ +SL+++Y  C    
Sbjct: 46  KSPVYTTRFTYPSLLKACASLSNLQYGKTIHSSIITTGLHSDQYITSSLINIYVKCGTFT 105

Query: 165 DNARLVFNDMKWK----NDVS-WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
           D  + VF+ +       +DV+ W ++I GY   G    G+  F  M              
Sbjct: 106 DAVK-VFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRM-------------- 150

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK- 278
                 S+G+   GK IH+ ++++    +  +  +++D Y +    ++A   F ++ ++ 
Sbjct: 151 -----QSSGYKE-GKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRS 204

Query: 279 DLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
           +++ WN +I G+ ++G  E  L  +   K+E       +FT  ++AC     +S G+QVH
Sbjct: 205 NIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVH 264

Query: 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
              ++ G + +  +  +L+ MY KC  I  ++K+F+E+ D+++  W +++  Y  +G+  
Sbjct: 265 CDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAY 324

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVV 457
           +A+ ++ +M    V  D    + VLT+ S AGL D G      +    +  +  I   ++
Sbjct: 325 DALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQSSITIQSALL 384

Query: 458 DLLGRAGRVKEAYELIKSMPFKPDESVWGPLL-GACKEHR 496
            +  + G    A  +  +M  + D   WG ++ G C+  +
Sbjct: 385 TMYSKFGDSNYANSIFSTMK-ERDVVAWGSVISGFCQNRK 423


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 203/612 (33%), Positives = 331/612 (54%), Gaps = 32/612 (5%)

Query: 16  HKIPPIIKQSLQSVKKSSIQSDPPLI----PKGPSILATNLIKSYFDEGLIEEARTLFDE 71
           H+ PP   + ++S  +  I      +    PK  S +   LIK Y   G  EEA +L+ E
Sbjct: 377 HRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHE 436

Query: 72  MPERDVVSWTVMI--------AGYTSFNC------HNQAWTVFVEMVRNEVNPNAFTLSS 117
           M  +D    +  +        +G+   +        ++   +F +M+   V P++ T+ S
Sbjct: 437 MVYQDQTQISNFVFPSVLKACSGFGDLSVGGKNGQASEGLDMFSQMISEAVEPDSVTMLS 496

Query: 118 VLKACKGMKSLSNAAL--------VHGMAIKEGLEGSI-YVENSLMDVYATCCISMDNAR 168
           V +AC  + SL    L        VHG  I+  ++  + ++  +LM++YA    ++ +  
Sbjct: 497 VTEACSELGSLRLGRLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTG-NLRDCH 555

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            VF  +K K  +SW TLI+ +  +G     L +F +M  +G+  + YS + ++ AC +  
Sbjct: 556 KVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTIS 615

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
           +   G  IH  +IK G  ++  V N+++DMY +   +  AN+ F+++ EK L+TWN++I 
Sbjct: 616 FSQLGAQIHGYIIKTGNFNDF-VQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMIC 674

Query: 289 GYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           G+ ++G S E + +F +M       +  TF S+I AC+ L  L  G+ VH  ++  GL  
Sbjct: 675 GFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRK 734

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           +  L  AL DMY+KCG +  +  +F  MS+R +V+W+ M+ GYG HG     I LF++M+
Sbjct: 735 DSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQML 794

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
            SG++P+ I FM +L+ACSHAG V+EG  YF SM+++ V P  + + C+VDLL RAG + 
Sbjct: 795 GSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMSEFGVEPKHDHFACMVDLLSRAGDLN 854

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527
            AY++I S+PF  + S+WG LL  C+ H+  ++ K     +LD+     G Y +LSNIYA
Sbjct: 855 GAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYA 914

Query: 528 AEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIR 587
            EG W++F K R +M+  G +K  G S IE+  K+  F   D   S T+ +Y  LE    
Sbjct: 915 EEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRFGPGDTSHSQTKDIYRFLENFRS 974

Query: 588 HMNETAY--EPD 597
            ++   Y  EPD
Sbjct: 975 LVHAQVYDSEPD 986



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/302 (22%), Positives = 124/302 (41%), Gaps = 62/302 (20%)

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG- 294
           +HA +   G   + P    +++ Y +      + + FD   + D   W  +I  Y   G 
Sbjct: 367 LHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGF 426

Query: 295 ---------------------------------------------SSECLNMFSKMKSER 309
                                                        +SE L+MFS+M SE 
Sbjct: 427 FEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKNGQASEGLDMFSQMISEA 486

Query: 310 FSPNCFTFTSIIAACATLAALSC--------GQQVHAGIVRRGLDGNLA-LANALIDMYA 360
             P+  T  S+  AC+ L +L          G+ VH  ++RR +D  L  L  AL+++YA
Sbjct: 487 VEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYA 546

Query: 361 KCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420
             GN+ D  K+F  + ++ +++W +++  +  +G  +EA+ LF +M   G+ PD     +
Sbjct: 547 DTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLAS 606

Query: 421 VLTACSHAGLVDEGLKYFKSMNDYNV---NPNKEIYGCVVDLLGRAGRVKEAYELIKSMP 477
            L+AC        G +    ++ Y +   N N  +   ++D+  + G V  A ++ + + 
Sbjct: 607 SLSACGTISFSQLGAQ----IHGYIIKTGNFNDFVQNALIDMYAKCGFVHSANKMFEKIK 662

Query: 478 FK 479
            K
Sbjct: 663 EK 664



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 77/187 (41%), Gaps = 24/187 (12%)

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTW 383
           CAT   L+   Q+HA +   GL  +   +  LI+ YA+ G    S+++F      D   W
Sbjct: 358 CATSTTLT---QLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMW 414

Query: 384 TSMMIGYGAHGHGKEAIELFDEMV-KSGVRPDRIVFMAVLTACS---------HAGLVDE 433
             ++  Y   G  +EA+ L+ EMV +   +    VF +VL ACS           G   E
Sbjct: 415 GVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKNGQASE 474

Query: 434 GLKYFKSMNDYNVNPNKEIYGCVVDL--------LGRAGRVKEA---YELIKSMPFKPDE 482
           GL  F  M    V P+      V +         LGR GRVKE    +  +      P+ 
Sbjct: 475 GLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRRAMDPEL 534

Query: 483 SVWGPLL 489
              GP L
Sbjct: 535 DFLGPAL 541


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 172/494 (34%), Positives = 295/494 (59%), Gaps = 4/494 (0%)

Query: 117 SVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW 176
           + + AC   ++L     VH   +K      +Y+   L+ +Y  C  ++D+AR V + M  
Sbjct: 46  AAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCG-ALDDARNVLDGMPE 104

Query: 177 KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLI 236
           +N VSWT +I+GY+ SG     L +F  ML  G + N ++ +  + +C     +   + +
Sbjct: 105 RNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQV 164

Query: 237 HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-S 295
           H+ V+K  F S++ V +S+LDMY +   + +A + FD + E+D ++   II+GY + G  
Sbjct: 165 HSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGLD 224

Query: 296 SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
            E L++F ++ S     N  TFT+++ + + LA+L+ G+QVH  I+R+ L   + L N+L
Sbjct: 225 DEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQNSL 284

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           IDMY+KCG +  S+++F  M  R  ++W +M++GYG HG G+E ++LF  M +  V+PD 
Sbjct: 285 IDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMTEE-VKPDS 343

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
           +  +AVL+ CSH GLVDEGL  F  +  + N   +   YGCV+DLLGR+G++++A +LI+
Sbjct: 344 VTLLAVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGRSGQLQKALDLIE 403

Query: 475 SMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEE 534
            MPF+P  ++WG LLGAC+ H   ++G++ A ++LD++P   G Y+ILSNIYAA G W++
Sbjct: 404 HMPFEPTPAIWGSLLGACRVHINVSVGEVVAQKLLDMEPGNAGNYVILSNIYAAAGMWKD 463

Query: 535 FAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAY 594
             + RK+M      KE   SWI +   +  F ++++     + +   ++ +   +    +
Sbjct: 464 VFRVRKLMLENTVTKEPAKSWIILDKVIHTFHSSERFHPRKKDINAKIKEVYVDVKAAGF 523

Query: 595 EPDIDCLIHDLEGE 608
            PD+ C++HD++ E
Sbjct: 524 VPDLSCVLHDVDDE 537



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 167/305 (54%), Gaps = 14/305 (4%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           + P  LAT LI  Y   G +++AR + D MPER+VVSWT MI+GY+    H +A  +F+ 
Sbjct: 73  RPPVYLATRLIILYVRCGALDDARNVLDGMPERNVVSWTAMISGYSQSGRHAEALELFIR 132

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M+R     N FTL++VL +C   +S+     VH + +K   E  ++V +SL+D+Y     
Sbjct: 133 MLRAGCKANEFTLATVLTSCPVHQSIQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSG- 191

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
           ++  AR VF+ +  ++ VS T +I+GYA  G     L +F+++   G++ N  +F+  + 
Sbjct: 192 NIQEARKVFDMLPERDTVSCTAIISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLT 251

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           + +    +++GK +H  +++      + + NS++DMY +   L  + + FD M ++  I+
Sbjct: 252 SLSGLASLNYGKQVHGLILRKELPFFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAIS 311

Query: 283 WNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           WN ++ GY + G   E + +F  M +E   P+  T  ++++ C+           H G+V
Sbjct: 312 WNAMLMGYGRHGIGQEVVQLFRTM-TEEVKPDSVTLLAVLSGCS-----------HGGLV 359

Query: 342 RRGLD 346
             GLD
Sbjct: 360 DEGLD 364



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 167/325 (51%), Gaps = 11/325 (3%)

Query: 205 MLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264
           + + G +   + +  A+ AC     +  G+ +HA ++K  +   + +   ++ +Y R   
Sbjct: 32  LAVPGADARFHDYDAAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGA 91

Query: 265 LSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAA 323
           L DA    D M E+++++W  +I+GY +SG  +E L +F +M       N FT  +++ +
Sbjct: 92  LDDARNVLDGMPERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTS 151

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTW 383
           C    ++   +QVH+ +V+   + ++ + ++L+DMY K GNI +++K+F  + +RD V+ 
Sbjct: 152 CPVHQSIQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSC 211

Query: 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND 443
           T+++ GY   G   EA++LF ++  SG++ + + F  +LT+ S  GL    L Y K ++ 
Sbjct: 212 TAIISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLTSLS--GLA--SLNYGKQVHG 267

Query: 444 YNVNPNKEIY----GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL-P 498
             +      +      ++D+  + G++  +  +  +MP +   S W  +L     H +  
Sbjct: 268 LILRKELPFFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAIS-WNAMLMGYGRHGIGQ 326

Query: 499 NLGKLAALRVLDLKPNMMGTYIILS 523
            + +L      ++KP+ +    +LS
Sbjct: 327 EVVQLFRTMTEEVKPDSVTLLAVLS 351


>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Brachypodium distachyon]
          Length = 802

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 181/504 (35%), Positives = 288/504 (57%), Gaps = 3/504 (0%)

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           E+ P      + + AC   K+L +A  +H         G  +++NSL+ +Y  C  S+  
Sbjct: 46  ELAPTPRVYHAFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCG-SVVE 104

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  VF+ M+ K+ VSWT+LI GYA +      +G+   ML    + N ++F+  ++A  +
Sbjct: 105 AHKVFDKMRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAVGA 164

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
                 G  IHA  +K  +  ++ V +++LDMY R   +  A   FD++  K+ ++WN +
Sbjct: 165 YADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNAL 224

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+G+ + G  E  L +F++M+   F    FT++SI +A A + AL  G+ VHA +++   
Sbjct: 225 ISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQGKWVHAHMIKSRQ 284

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
                + N ++DMYAK G++ D++K+F  + ++DLVTW SM+  +  +G GKEA+  F+E
Sbjct: 285 KLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEE 344

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M KSG+  ++I F+ +LTACSH GLV EG  YF  + +YN+ P  E Y  VVDLLGRAG 
Sbjct: 345 MRKSGIYLNQISFLCILTACSHGGLVKEGKHYFDMIKEYNLEPEIEHYVTVVDLLGRAGL 404

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           +  A   I  MP +P  +VWG LL AC+ H+   +G+ AA  V  L P+  G  ++L NI
Sbjct: 405 LNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNI 464

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           YA+ G W+  A+ RK+M+  G KKE   SW+E+ + V  F+AND      + +Y + + +
Sbjct: 465 YASTGHWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRAEEIYKMWDEI 524

Query: 586 IRHMNETAYEPDID-CLIHDLEGE 608
              + +  Y PD+D  L+H  E E
Sbjct: 525 SMKIRKEGYVPDMDYVLLHVDEQE 548



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 102/321 (31%), Positives = 164/321 (51%), Gaps = 2/321 (0%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G + L  +LI  Y   G + EA  +FD+M  +D+VSWT +IAGY   +   +A  +   M
Sbjct: 84  GDAFLDNSLIHLYCKCGSVVEAHKVFDKMRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGM 143

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           ++    PN FT +S+LKA            +H +A+K      +YV ++L+D+YA C   
Sbjct: 144 LKGRFKPNGFTFASLLKAVGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCG-K 202

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           MD A  VF+ +  KN VSW  LI+G+A  G+G   L VF EM   G E   +++S    A
Sbjct: 203 MDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSA 262

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
            A  G +  GK +HA +IK        V N++LDMY +   + DA + F+ +  KDL+TW
Sbjct: 263 LAGIGALEQGKWVHAHMIKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTW 322

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N+++  + + G   E ++ F +M+      N  +F  I+ AC+    +  G+     I  
Sbjct: 323 NSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQISFLCILTACSHGGLVKEGKHYFDMIKE 382

Query: 343 RGLDGNLALANALIDMYAKCG 363
             L+  +     ++D+  + G
Sbjct: 383 YNLEPEIEHYVTVVDLLGRAG 403



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 126/276 (45%), Gaps = 25/276 (9%)

Query: 299 LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDM 358
           L+    + S   +P    + + I ACA    L   +++HA +      G+  L N+LI +
Sbjct: 36  LHDLDHLDSGELAPTPRVYHAFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHL 95

Query: 359 YAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVF 418
           Y KCG++ ++ K+F +M ++D+V+WTS++ GY  +    EAI L   M+K   +P+   F
Sbjct: 96  YCKCGSVVEAHKVFDKMRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTF 155

Query: 419 MAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIY--GCVVDLLGRAGRVKEAYELIKSM 476
            ++L A       D G+           + ++++Y    ++D+  R G++  A  +   +
Sbjct: 156 ASLLKAV--GAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKL 213

Query: 477 PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN-MMGTYIILSNIYAAEGKWEEF 535
             K   S W  L+           G+ A +   +++ N    T+   S+I++A       
Sbjct: 214 DSKNGVS-WNALISGFARK---GDGETALMVFAEMQRNGFEATHFTYSSIFSA------- 262

Query: 536 AKFRKIMRGMGSKKE---VGMSWIEVRDKVCGFIAN 568
                 + G+G+ ++   V    I+ R K+  F+ N
Sbjct: 263 ------LAGIGALEQGKWVHAHMIKSRQKLTAFVGN 292


>gi|326494876|dbj|BAJ94557.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 783

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 176/493 (35%), Positives = 281/493 (56%), Gaps = 3/493 (0%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           AR LFD M  R++VSWT MIAGY   +   +A ++F ++ +    P+ F  +S+L +C  
Sbjct: 292 ARRLFDSMENRNLVSWTTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCGS 351

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTT 184
           + ++     VH   IK  LE   YV+N+L+D+YA C   +  AR VF  +   + +S+  
Sbjct: 352 LAAIWQGRQVHAHVIKADLESDEYVKNALIDMYAKC-EHLTEARAVFEALAEDDAISYNA 410

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG 244
           +I GYA  G+  G + +F +M    ++ +  +F   +   +S   +   K IH  ++K G
Sbjct: 411 MIEGYARLGDLTGAVEIFGKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQIHGLIVKSG 470

Query: 245 FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFS 303
              +L   ++++D+Y +F  + DA   F  M  +D++ WN +I G  +     E + +F+
Sbjct: 471 TSLDLYAGSALIDVYSKFSLVDDAKLVFSLMQNRDMVIWNAMIFGLAQNERGEEAVKLFA 530

Query: 304 KMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG 363
           +++    +PN FTF +++   +TLA++  GQQ HA I++ G D +  ++NALIDMYAKCG
Sbjct: 531 RLRVSGLTPNEFTFVALVTVASTLASIFHGQQFHAQIIKAGADSDPHISNALIDMYAKCG 590

Query: 364 NISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLT 423
            I + + +F     +D++ W SM+  Y  HGH +EA+ +F  M  +GV P+ + F++VL+
Sbjct: 591 FIEEGRLLFESTLGKDVICWNSMISTYAQHGHAEEALHVFGMMEGAGVEPNYVTFVSVLS 650

Query: 424 ACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDE 482
           AC+HAGLVDEGL +F SM   Y V P  E Y  VV+L GR+G++  A E I+ MP +P  
Sbjct: 651 ACAHAGLVDEGLHHFNSMKTKYAVEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIEPVA 710

Query: 483 SVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIM 542
           ++W  LL AC       +G+ A    L   P   G  +++SNIYA++G W +  K R+ M
Sbjct: 711 TIWRSLLSACHLFGNVEIGRYATEMALLADPADSGPSVLMSNIYASKGLWADAQKLRQGM 770

Query: 543 RGMGSKKEVGMSW 555
              G  KE G SW
Sbjct: 771 DCAGVVKEPGYSW 783



 Score =  251 bits (640), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 161/540 (29%), Positives = 284/540 (52%), Gaps = 23/540 (4%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            LA  L++ Y   G + +AR LFD MP R++VSW   I+ Y      + A  +F      
Sbjct: 66  FLANLLLRGYSKLGRLGDARRLFDSMPSRNLVSWGSAISMYAQHGREDDALLLFAAFPSA 125

Query: 107 EVN------PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
                    PN F L+S L+AC   ++      VHG+A K GL+ +++V  +L+++YA  
Sbjct: 126 GAASPDGEPPNEFLLASALRACAQSRAARFGEQVHGVAAKLGLDANVFVGTALVNLYAKA 185

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
              +D A  VF+ +  +N V+WT +ITGY+ +G     L +F  M L+GV  + +  + A
Sbjct: 186 G-RIDAAMSVFDALPARNPVTWTAVITGYSQAGQAGVALELFGRMGLDGVRPDRFVLASA 244

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
             AC+  G+V  G+ IH    +    S+  V+N+++D+YC+   L  A + FD M  ++L
Sbjct: 245 ASACSGLGFVEGGRQIHGYAYRTAAESDASVVNALIDLYCKCSRLLLARRLFDSMENRNL 304

Query: 281 ITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           ++W T+IAGY + S  +E ++MF ++    + P+ F  TSI+ +C +LAA+  G+QVHA 
Sbjct: 305 VSWTTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCGSLAAIWQGRQVHAH 364

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
           +++  L+ +  + NALIDMYAKC ++++++ +F  +++ D +++ +M+ GY   G    A
Sbjct: 365 VIKADLESDEYVKNALIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYARLGDLTGA 424

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK--EIYG--C 455
           +E+F +M    ++P  + F+++L   S        L+  K ++   V      ++Y    
Sbjct: 425 VEIFGKMRYCSLKPSLLTFVSLLGVSSS----RSDLELSKQIHGLIVKSGTSLDLYAGSA 480

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL-GACKEHRLPNLGKL-AALRVLDLKP 513
           ++D+  +   V +A +L+ S+    D  +W  ++ G  +  R     KL A LRV  L P
Sbjct: 481 LIDVYSKFSLVDDA-KLVFSLMQNRDMVIWNAMIFGLAQNERGEEAVKLFARLRVSGLTP 539

Query: 514 NMMGTYIILSNIYAAEGKWEEFAKFRK--IMRGMGSKKEVGMSWIEVRDKVCGFIANDKM 571
           N   T++ L  + +         +F    I  G  S   +  + I++  K CGFI   ++
Sbjct: 540 NEF-TFVALVTVASTLASIFHGQQFHAQIIKAGADSDPHISNALIDMYAK-CGFIEEGRL 597



 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 130/450 (28%), Positives = 237/450 (52%), Gaps = 3/450 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + T L+  Y   G I+ A ++FD +P R+ V+WT +I GY+       A  +F  M  +
Sbjct: 173 FVGTALVNLYAKAGRIDAAMSVFDALPARNPVTWTAVITGYSQAGQAGVALELFGRMGLD 232

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V P+ F L+S   AC G+  +     +HG A +   E    V N+L+D+Y  C   +  
Sbjct: 233 GVRPDRFVLASAASACSGLGFVEGGRQIHGYAYRTAAESDASVVNALIDLYCKCS-RLLL 291

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR +F+ M+ +N VSWTT+I GY  +      + +F ++   G + + ++ +  + +C S
Sbjct: 292 ARRLFDSMENRNLVSWTTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCGS 351

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  G+ +HA VIK    S+  V N+++DMY + + L++A   F+ + E D I++N +
Sbjct: 352 LAAIWQGRQVHAHVIKADLESDEYVKNALIDMYAKCEHLTEARAVFEALAEDDAISYNAM 411

Query: 287 IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I GY + G  +  + +F KM+     P+  TF S++   ++ + L   +Q+H  IV+ G 
Sbjct: 412 IEGYARLGDLTGAVEIFGKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQIHGLIVKSGT 471

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             +L   +ALID+Y+K   + D++ +FS M +RD+V W +M+ G   +  G+EA++LF  
Sbjct: 472 SLDLYAGSALIDVYSKFSLVDDAKLVFSLMQNRDMVIWNAMIFGLAQNERGEEAVKLFAR 531

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           +  SG+ P+   F+A++T  S    +  G ++   +     + +  I   ++D+  + G 
Sbjct: 532 LRVSGLTPNEFTFVALVTVASTLASIFHGQQFHAQIIKAGADSDPHISNALIDMYAKCGF 591

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           ++E   L +S   K D   W  ++    +H
Sbjct: 592 IEEGRLLFESTLGK-DVICWNSMISTYAQH 620



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 107/447 (23%), Positives = 218/447 (48%), Gaps = 32/447 (7%)

Query: 135 HGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGN 194
           H  A+  GL   +++ N L+  Y+     + +AR +F+ M  +N VSW + I+ YA  G 
Sbjct: 53  HARAVVSGLLPDLFLANLLLRGYSKLG-RLGDARRLFDSMPSRNLVSWGSAISMYAQHGR 111

Query: 195 GYGGLGVFKEMLLEGVEM------NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSN 248
               L +F      G         N +  + A+RACA +    FG+ +H    K G  +N
Sbjct: 112 EDDALLLFAAFPSAGAASPDGEPPNEFLLASALRACAQSRAARFGEQVHGVAAKLGLDAN 171

Query: 249 LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKS 307
           + V  +++++Y +   +  A   FD +  ++ +TW  +I GY ++G +   L +F +M  
Sbjct: 172 VFVGTALVNLYAKAGRIDAAMSVFDALPARNPVTWTAVITGYSQAGQAGVALELFGRMGL 231

Query: 308 ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISD 367
           +   P+ F   S  +AC+ L  +  G+Q+H    R   + + ++ NALID+Y KC  +  
Sbjct: 232 DGVRPDRFVLASAASACSGLGFVEGGRQIHGYAYRTAAESDASVVNALIDLYCKCSRLLL 291

Query: 368 SQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH 427
           ++++F  M +R+LV+WT+M+ GY  +    EA+ +F ++ ++G +PD     ++L +C  
Sbjct: 292 ARRLFDSMENRNLVSWTTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCGS 351

Query: 428 AGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESV--- 484
              + +G +    +   ++  ++ +   ++D+  +   + EA  + +++    D+++   
Sbjct: 352 LAAIWQGRQVHAHVIKADLESDEYVKNALIDMYAKCEHLTEARAVFEAL--AEDDAISYN 409

Query: 485 --------WGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFA 536
                    G L GA +       GK   +R   LKP+++ T++ L  + ++    E   
Sbjct: 410 AMIEGYARLGDLTGAVE-----IFGK---MRYCSLKPSLL-TFVSLLGVSSSRSDLELSK 460

Query: 537 KFRKIMRGMGSKKEV--GMSWIEVRDK 561
           +   ++   G+  ++  G + I+V  K
Sbjct: 461 QIHGLIVKSGTSLDLYAGSALIDVYSK 487



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 44/100 (44%), Gaps = 8/100 (8%)

Query: 23  KQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTV 82
           +Q    + K+   SDP +        +  LI  Y   G IEE R LF+    +DV+ W  
Sbjct: 561 QQFHAQIIKAGADSDPHI--------SNALIDMYAKCGFIEEGRLLFESTLGKDVICWNS 612

Query: 83  MIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKAC 122
           MI+ Y       +A  VF  M    V PN  T  SVL AC
Sbjct: 613 MISTYAQHGHAEEALHVFGMMEGAGVEPNYVTFVSVLSAC 652


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 193/576 (33%), Positives = 322/576 (55%), Gaps = 17/576 (2%)

Query: 45  PSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           P++ + N LI +Y    LI  AR +FDE+P+ D+VS+  +IA Y        A  +F E+
Sbjct: 73  PNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEV 132

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
                  + FTLS V+ AC     L     +H   +  G +    V N+++  Y+     
Sbjct: 133 RELRFGLDGFTLSGVIIACGDDVGLVRQ--LHCFVVVCGYDCYASVNNAVLACYSRKGF- 189

Query: 164 MDNARLVFNDMK---WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
           ++ AR VF +M     +++VSW  +I        G   + +F+EM+  G++++ ++ +  
Sbjct: 190 LNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASV 249

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC---LSDANQYFDEMTE 277
           + A      +  G   H  +IK GF  N  V + ++D+Y +  C   + +  + F+E+  
Sbjct: 250 LTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSK--CAGGMVECRKVFEEIAA 307

Query: 278 KDLITWNTIIAGYEKSG--SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ 335
            DL+ WNT+I+G+ +    S + +  F +M+   F P+  +F  + +AC+ L++ S G+Q
Sbjct: 308 PDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQ 367

Query: 336 VHAGIVRRGLDGN-LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
           VHA  ++  +  N +++ NAL+ MY+KCGN+ D++++F  M + ++V+  SM+ GY  HG
Sbjct: 368 VHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHG 427

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIY 453
              E++ LF+ M++  + P+ I F+AVL+AC H G V+EG KYF  M + + + P  E Y
Sbjct: 428 VEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEHY 487

Query: 454 GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513
            C++DLLGRAG++KEA  +I++MPF P    W  LLGAC++H    L   AA   L L+P
Sbjct: 488 SCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLQLEP 547

Query: 514 NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGS 573
                Y++LSN+YA+  +WEE A  +++MR  G KK+ G SWIE+  KV  F+A D    
Sbjct: 548 YNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHP 607

Query: 574 HTQYVYGVLEMLIRHMNETAYEPDID-CLIHDLEGE 608
             + ++  +  ++R M +  Y PDI   L+ D E E
Sbjct: 608 MIKEIHVYMGEILRKMKQAGYVPDIRWALVKDEEVE 643



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 117/471 (24%), Positives = 210/471 (44%), Gaps = 47/471 (9%)

Query: 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFND 173
           T  ++LKAC   + L     +H +  K  +  S Y+ N    +Y+ C  S+ NA+  F+ 
Sbjct: 11  TFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCG-SLHNAQTSFDL 69

Query: 174 MKWKNDVSWTTLITGYA-HS------------------------------GNGYGGLGVF 202
            ++ N  S+ TLI  YA HS                              G     L +F
Sbjct: 70  TQYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLF 129

Query: 203 KEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRF 262
            E+      ++ ++ S  + AC     V   + +H  V+  G+     V N++L  Y R 
Sbjct: 130 AEVRELRFGLDGFTLSGVIIACGDD--VGLVRQLHCFVVVCGYDCYASVNNAVLACYSRK 187

Query: 263 DCLSDANQYFDEMTE---KDLITWNTIIA--GYEKSGSSECLNMFSKMKSERFSPNCFTF 317
             L++A + F EM E   +D ++WN +I   G  + G  E + +F +M       + FT 
Sbjct: 188 GFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREG-LEAVELFREMVRRGLKVDMFTM 246

Query: 318 TSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC-GNISDSQKIFSEMS 376
            S++ A   +  L  G Q H  +++ G  GN  + + LID+Y+KC G + + +K+F E++
Sbjct: 247 ASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIA 306

Query: 377 DRDLVTWTSMMIGYGAHGH-GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGL 435
             DLV W +M+ G+  +    ++ I  F EM  +G  PD   F+ V +ACS+      G 
Sbjct: 307 APDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGK 366

Query: 436 KYFKSMNDYNVNPNK-EIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKE 494
           +        ++  N+  +   +V +  + G V +A  +  +MP + +      ++    +
Sbjct: 367 QVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMP-EHNMVSLNSMIAGYAQ 425

Query: 495 H--RLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMR 543
           H   + +L     +   D+ PN + T+I + +     GK EE  K+  +M+
Sbjct: 426 HGVEVESLRLFELMLQKDIAPNTI-TFIAVLSACVHTGKVEEGQKYFNMMK 475


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 197/587 (33%), Positives = 318/587 (54%), Gaps = 45/587 (7%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM-VRNEVNP 110
           ++  Y   G +  AR LF++MPE+DVVSW  M++G+       +A  +F +M V+NE++ 
Sbjct: 128 MLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISW 187

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           N   LS+ ++  +    + +A  +        ++  I   N LM  Y      +D+AR +
Sbjct: 188 NGL-LSAYVQNGR----IEDARRL----FDSKMDWEIVSWNCLMGGYVRK-KRLDDARSL 237

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW- 229
           F+ M  ++ +SW  +ITGYA +G       +F+E+ +  V    ++++  V      G  
Sbjct: 238 FDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDV----FAWTAMVSGFVQNGML 293

Query: 230 ---------------VSFGKLIHAAVIKHGF-----------GSNLPVMNSILDMYCRFD 263
                          VS+  +I   V                  N    N+++  Y +  
Sbjct: 294 DEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCG 353

Query: 264 CLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIA 322
            +  A   FDEM ++D I+W  +I+GY +SG SE  L++F KMK +    N       ++
Sbjct: 354 NIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALS 413

Query: 323 ACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVT 382
           +CA +AAL  G+Q+H  +V+ G        NAL+ MY KCG+I ++  +F +++++D+V+
Sbjct: 414 SCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVS 473

Query: 383 WTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM- 441
           W +M+ GY  HG GKEA+ LF+ M K  ++PD +  + VL+ACSH GLVD+G++YF SM 
Sbjct: 474 WNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMY 532

Query: 442 NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLG 501
            +Y +  N + Y C++DLLGRAGR+ EA  L+KSMPF PD + WG LLGA + H    LG
Sbjct: 533 QNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELG 592

Query: 502 KLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDK 561
           + AA +V +++P+  G Y++LSN+YAA G+W E  + R  MR  G KK  G SW+E+++K
Sbjct: 593 EKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNK 652

Query: 562 VCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
              F   D      + +Y  LE L   + +  +      ++HD+E E
Sbjct: 653 THIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLHDVEEE 699



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 175/363 (48%), Gaps = 47/363 (12%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T ++  +   G+++EA  +F+EMPE++ VSW  MIAGY       +A  +F +M      
Sbjct: 281 TAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQM------ 334

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P+  T S                                  N+++  YA C  ++D A++
Sbjct: 335 PSRNTSSW---------------------------------NTMVTGYAQCG-NIDQAKI 360

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           +F++M  ++ +SW  +I+GYA SG     L +F +M  +G  +N  + + A+ +CA    
Sbjct: 361 LFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAA 420

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           +  GK +H  ++K GF +     N++L MY +   + +A   F+++TEKD+++WNT+IAG
Sbjct: 421 LELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAG 480

Query: 290 YEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-GLDG 347
           Y + G   E L +F  MK     P+  T   +++AC+    +  G +    + +  G+  
Sbjct: 481 YARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITA 539

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGH---GKEAIELF 403
           N      +ID+  + G + ++  +   M    D  TW +++     HG    G++A E  
Sbjct: 540 NAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKV 599

Query: 404 DEM 406
            EM
Sbjct: 600 FEM 602



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 153/370 (41%), Gaps = 68/370 (18%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTL-------------------------------F 69
           +P+   +    +I  Y     IE+AR L                               F
Sbjct: 303 MPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILF 362

Query: 70  DEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLS 129
           DEMP+RD +SW  MI+GY       +A  +F++M R+    N   L+  L +C  + +L 
Sbjct: 363 DEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALE 422

Query: 130 NAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGY 189
               +HG  +K G +      N+L+ +Y  C  S++ A  VF D+  K+ VSW T+I GY
Sbjct: 423 LGKQLHGRLVKAGFQTGYIAGNALLAMYGKCG-SIEEAFDVFEDITEKDIVSWNTMIAGY 481

Query: 190 AHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNL 249
           A  G G   L +F+ M +  ++ +  +    + AC+ TG V  G               +
Sbjct: 482 ARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGLVDKG---------------M 525

Query: 250 PVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSE 308
              NS   MY  +   ++A  Y              +I    ++G   E LN+   MKS 
Sbjct: 526 EYFNS---MYQNYGITANAKHY------------TCMIDLLGRAGRLDEALNL---MKSM 567

Query: 309 RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDS 368
            F P+  T+ +++ A         G++    +     D N  +   L ++YA  G   + 
Sbjct: 568 PFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPD-NSGMYVLLSNLYAASGRWREV 626

Query: 369 QKIFSEMSDR 378
           +++ S+M D+
Sbjct: 627 REMRSKMRDK 636



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 85/413 (20%), Positives = 166/413 (40%), Gaps = 87/413 (21%)

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSG------------------------NGY---G 197
           ++A  VFN M+ ++ V++  +I+GY  +                         +GY   G
Sbjct: 77  ESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNG 136

Query: 198 GLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIH---------------AAVIK 242
            L   + +  +  E +  S++  +   A  G+V   + I                +A ++
Sbjct: 137 NLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQ 196

Query: 243 HG--------FGSNLP----VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
           +G        F S +       N ++  Y R   L DA   FD M  +D I+WN +I GY
Sbjct: 197 NGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGY 256

Query: 291 EKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAAC------------------------- 324
            ++G  SE   +F ++       + F +T++++                           
Sbjct: 257 AQNGLLSEARRLFEELPIR----DVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWN 312

Query: 325 ATLAALSCGQQVHAG--IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVT 382
           A +A     QQ+     +  +    N +  N ++  YA+CGNI  ++ +F EM  RD ++
Sbjct: 313 AMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCIS 372

Query: 383 WTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN 442
           W +M+ GY   G  +EA+ LF +M + G   +R      L++C+    ++ G +    + 
Sbjct: 373 WAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLV 432

Query: 443 DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
                        ++ + G+ G ++EA+++ + +  K D   W  ++     H
Sbjct: 433 KAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEK-DIVSWNTMIAGYARH 484



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 111/216 (51%), Gaps = 18/216 (8%)

Query: 275 MTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG 333
           + + D++ WN  I+ Y + G  E  L++F+ M+      +  T+ ++I+   +     C 
Sbjct: 55  IVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRR----STVTYNAMISGYLSNNKFDCA 110

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
           ++V   +     D +L   N ++  Y K GN+S ++ +F++M ++D+V+W +M+ G+  +
Sbjct: 111 RKVFEKMP----DRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQN 166

Query: 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIY 453
           G  +EA ++FD+M+      + I +  +L+A    G +++  + F S  D+ +      +
Sbjct: 167 GFVEEARKIFDQMLV----KNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVS----W 218

Query: 454 GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
            C++    R  R+ +A  L   MP + D+  W  ++
Sbjct: 219 NCLMGGYVRKKRLDDARSLFDRMPVR-DKISWNIMI 253


>gi|242095158|ref|XP_002438069.1| hypothetical protein SORBIDRAFT_10g007640 [Sorghum bicolor]
 gi|241916292|gb|EER89436.1| hypothetical protein SORBIDRAFT_10g007640 [Sorghum bicolor]
          Length = 563

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 180/531 (33%), Positives = 306/531 (57%), Gaps = 9/531 (1%)

Query: 29  VKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYT 88
           +  SS  S P L+      L+T L+  Y   G +  AR +FD MP R VVSWT M++GY 
Sbjct: 39  ITASSDPSPPDLLH-----LSTKLVMFYSHFGDVAAARAVFDGMPHRSVVSWTAMVSGYA 93

Query: 89  SFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIY 148
                 +A  +F  M+R+   PN FT  S  +AC G +   +   VH  A K    G ++
Sbjct: 94  KNGRAPEALELFALMLRSGARPNQFTFGSAARACAGGRCARSGEQVHACAAKGRHAGDMF 153

Query: 149 VENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE 208
           V+++LMD++  C  S+ +AR +F +M+ K+ VSW  L+ G+   G+    LG+F  ML +
Sbjct: 154 VQSALMDMHLRCG-SVGDARRLFAEMERKDLVSWNALMRGFVERGHYSDALGLFASMLRD 212

Query: 209 GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDA 268
           G+  + ++F  A++AC +   +   +LIH  +IK G+        S++D Y +   LS A
Sbjct: 213 GMLPDHFTFGSALKACGAISVIFNVELIHTCIIKLGYWDEKVATASLIDSYAKCRSLSSA 272

Query: 269 NQYFDEMTEKDLITWNTIIAGY--EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACAT 326
              +D + E DL++   +I+ +  +++ S + + +F K+  E    +    ++++  CA 
Sbjct: 273 RVIYDSICEPDLVSSTALISDHSMDRNYSEDAMKLFCKIHREGLRIDGILLSALLGVCAN 332

Query: 327 LAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSM 386
           +A++  G Q+HA + ++   G+LAL NAL+DMYAK G   DS++ F EM  R++++WTS+
Sbjct: 333 VASIKFGTQIHAYMHKKQPMGDLALDNALVDMYAKSGEYLDSRRAFDEMPSRNVISWTSL 392

Query: 387 MIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS-MNDYN 445
           +     HG G++A+ LF  M + GV+P+ + F+++L+ACSH+G++++G++YF S MN Y 
Sbjct: 393 ITACAQHGFGEDAVTLFARMEEDGVKPNDVTFLSLLSACSHSGMMNKGMEYFTSMMNKYG 452

Query: 446 VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAA 505
           ++P  + Y   +DLL R G++++A+ L++    +   S++G +LGACK H    LG+ AA
Sbjct: 453 IDPRAKHYSSAIDLLARGGQLEDAWMLLQKTNTECKSSMYGAMLGACKVHGNIPLGETAA 512

Query: 506 LRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWI 556
             +  + P     Y +L+N+YA    WE+  + RK++      KEVG S I
Sbjct: 513 NNLFSIDPKSSVNYAVLANMYAESCLWEDAQRTRKLLAETSKGKEVGFSVI 563


>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
           [Vitis vinifera]
 gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
          Length = 618

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 192/555 (34%), Positives = 310/555 (55%), Gaps = 6/555 (1%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTS-FNCHNQAWTVFVEMVRNEVNP 110
           L+  + D      A  LF ++P  +  ++ +MI G T+ +   N     + +M    + P
Sbjct: 65  LLHRFIDLKDFNNASLLFSQIPYPNEYAFNIMIRGLTTTWQKFNLTIEFYYQMKDFGIRP 124

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           N FT   V  AC  +  L++    H   +K GL    +V +SL+ +Y+ C   +  AR V
Sbjct: 125 NNFTYPFVFIACANLLVLNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCG-ELGCARRV 183

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F+++  K+ VSW ++I+GY+  G     +G+F EM   G E +  +    + AC   G +
Sbjct: 184 FDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDL 243

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
             G  I   V+++    N  V ++++ MY +   LS A + FD M +KD++TWN +I GY
Sbjct: 244 GLGSWIEGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGY 303

Query: 291 EKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
            ++G S E + +FS M+    +P+  T   +++ACA++ AL  G+ +      RGL  ++
Sbjct: 304 AQNGVSDEAIILFSGMRESGVNPDKITLVGVLSACASIGALDFGKWLDTYASERGLQNDI 363

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
            ++ ALIDMYAKCG++ D+ ++F +M  ++ V+W +M+     HG  +E++ LF  M K 
Sbjct: 364 YVSTALIDMYAKCGSLDDALRVFEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKE 423

Query: 410 G--VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRV 466
           G  VRP+ I F+ VL+AC HAGLVDEG + F  M+  + + P  E + C+VDLL RAG V
Sbjct: 424 GGAVRPNDISFIGVLSACVHAGLVDEGRQLFDLMSSSFGLVPKIEHHSCMVDLLARAGHV 483

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            EA++ I+ MP KPDE V G LLGAC++ R  ++ +     +L+++P   G YII S I+
Sbjct: 484 HEAWDFIEKMPEKPDEVVLGALLGACQKRRNVDVSERVMHMLLEMEPLNSGNYIISSKIF 543

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           A   +W++ A+ R +MR  G  K  G SWIE+ ++V  F A D +   +Q +  V+ +L 
Sbjct: 544 ANMKRWDDSARMRVLMRQRGVTKTPGCSWIEIENQVHEFHAGDVLHFISQDMCQVINLLN 603

Query: 587 RHMNETAYEPDIDCL 601
             M    Y P +D L
Sbjct: 604 EEMKVEGYGPKVDFL 618



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 111/385 (28%), Positives = 185/385 (48%), Gaps = 37/385 (9%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
           +LI  Y   G +  AR +FDE+ E+D+VSW  MI+GY+       A  +F EM      P
Sbjct: 166 SLITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEP 225

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           +  TL S+L AC  +  L   + + G  ++  ++ + +V ++L+ +Y  C   + +AR V
Sbjct: 226 DEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVGSALIGMYGKCG-DLSSARRV 284

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F+ M  K+ V+W  +ITGYA +G     + +F  M   GV  +  +    + ACAS G +
Sbjct: 285 FDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKITLVGVLSACASIGAL 344

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
            FGK +     + G  +++ V  +++DMY +   L DA + F++M +K+ ++WN +I+  
Sbjct: 345 DFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDALRVFEDMPQKNEVSWNAMISAL 404

Query: 291 EKSGS-SECLNMFSKMKSE--RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
              G   E L++F +M  E     PN  +F  +++AC           VHAG+V  G   
Sbjct: 405 AFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSAC-----------VHAGLVDEG--- 450

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
                  L D+ +    +    +  S M D         ++    H H     E +D + 
Sbjct: 451 -----RQLFDLMSSSFGLVPKIEHHSCMVD---------LLARAGHVH-----EAWDFIE 491

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVD 432
           K   +PD +V  A+L AC     VD
Sbjct: 492 KMPEKPDEVVLGALLGACQKRRNVD 516



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/251 (32%), Positives = 124/251 (49%), Gaps = 5/251 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S + + LI  Y   G +  AR +FD M ++DVV+W  MI GY      ++A  +F  M  
Sbjct: 262 SFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRE 321

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           + VNP+  TL  VL AC  + +L     +   A + GL+  IYV  +L+D+YA C  S+D
Sbjct: 322 SGVNPDKITLVGVLSACASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAKCG-SLD 380

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG--VEMNPYSFSIAVRA 223
           +A  VF DM  KN+VSW  +I+  A  G     L +FK M  EG  V  N  SF   + A
Sbjct: 381 DALRVFEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSA 440

Query: 224 CASTGWVSFGK-LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLI 281
           C   G V  G+ L        G    +   + ++D+  R   + +A  + ++M EK D +
Sbjct: 441 CVHAGLVDEGRQLFDLMSSSFGLVPKIEHHSCMVDLLARAGHVHEAWDFIEKMPEKPDEV 500

Query: 282 TWNTIIAGYEK 292
               ++   +K
Sbjct: 501 VLGALLGACQK 511


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 186/560 (33%), Positives = 307/560 (54%), Gaps = 4/560 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L++S       + A  +F + P  ++  +  +I G  S +    A +V+  M ++   P+
Sbjct: 41  LLRSSLHFAATQYATVVFAQTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPD 100

Query: 112 AFTLSSVLKACKGMKSLSNAAL-VHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
            FT   VLKAC  +    +  L +H + IK G +  ++V+  L+ +Y+      D AR V
Sbjct: 101 NFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTD-ARKV 159

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F+++  KN VSWT +I GY  SG     LG+F+ +L  G+  + ++    + AC+  G +
Sbjct: 160 FDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDL 219

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
           + G+ I   + + G   N+ V  S++DMY +   + +A + FD M EKD++ W+ +I GY
Sbjct: 220 ASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGY 279

Query: 291 EKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
             +G   E L++F +M+ E   P+C+    + +AC+ L AL  G      +       N 
Sbjct: 280 ASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNP 339

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
            L  ALID YAKCG+++ ++++F  M  +D V + +++ G    GH   A  +F +MVK 
Sbjct: 340 VLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKV 399

Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKE 468
           G++PD   F+ +L  C+HAGLVD+G +YF  M+  ++V P  E YGC+VDL  RAG + E
Sbjct: 400 GMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVE 459

Query: 469 AYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA 528
           A +LI+SMP + +  VWG LLG C+ H+   L +    ++++L+P   G Y++LSNIY+A
Sbjct: 460 AQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIELEPWNSGHYVLLSNIYSA 519

Query: 529 EGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRH 588
             +W+E  K R  +   G +K  G SW+EV   V  F+  D     +  +Y  LE L + 
Sbjct: 520 SHRWDEAEKIRSSLNQKGMQKLPGCSWVEVDGVVHEFLVGDTSHPLSHKIYEKLESLFKD 579

Query: 589 MNETAYEPDIDCLIHDLEGE 608
           + E  Y P  + ++ D+E E
Sbjct: 580 LREAGYNPTTEFVLFDVEEE 599



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 179/365 (49%), Gaps = 4/365 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + T L+  Y   G + +AR +FDE+PE++VVSWT +I GY    C  +A  +F  ++  
Sbjct: 138 FVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEM 197

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + P++FTL  +L AC  +  L++   + G   + G  G+++V  SL+D+YA C  SM+ 
Sbjct: 198 GLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCG-SMEE 256

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR VF+ M  K+ V W+ LI GYA +G     L VF EM  E V  + Y+      AC+ 
Sbjct: 257 ARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSR 316

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G +  G      +    F SN  +  +++D Y +   ++ A + F  M  KD + +N +
Sbjct: 317 LGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAV 376

Query: 287 IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-G 344
           I+G    G       +F +M      P+  TF  ++  C     +  G +  +G+     
Sbjct: 377 ISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFS 436

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEAIELF 403
           +   +     ++D+ A+ G + ++Q +   M  + + + W +++ G   H   + A  + 
Sbjct: 437 VTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVL 496

Query: 404 DEMVK 408
            ++++
Sbjct: 497 KQLIE 501



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 117/253 (46%), Gaps = 13/253 (5%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   +AT+L+  Y   G +EEAR +FD M E+DVV W+ +I GY S     +A  VF EM
Sbjct: 236 GNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEM 295

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
            R  V P+ + +  V  AC  + +L       G+   +    +  +  +L+D YA C  S
Sbjct: 296 QRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCG-S 354

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +  A+ VF  M+ K+ V +  +I+G A  G+     GVF +M+  G++ +  +F   +  
Sbjct: 355 VAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCG 414

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSI------LDMYCRFDCLSDANQYFDEM-T 276
           C   G V  G    +     G  S   V  +I      +D+  R   L +A      M  
Sbjct: 415 CTHAGLVDDGHRYFS-----GMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPM 469

Query: 277 EKDLITWNTIIAG 289
           E + I W  ++ G
Sbjct: 470 EANSIVWGALLGG 482


>gi|224106429|ref|XP_002314162.1| predicted protein [Populus trichocarpa]
 gi|222850570|gb|EEE88117.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 178/512 (34%), Positives = 300/512 (58%), Gaps = 5/512 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + + ++  Y   G I  AR LFD+MP+R VV+W  +I GY + NC   A  +F++M++  
Sbjct: 106 ICSAVVDMYAKCGEISSARVLFDQMPQRTVVTWNSLIYGYLAVNCPKIAIELFIKMLKAA 165

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           +N +AF++SS L  C  +++      VHG+ +K GL  ++ V  SL+D+Y+ C   +D++
Sbjct: 166 INVSAFSVSSCLAGCSQLEAREVGTQVHGLILKTGLGYNVVVGTSLVDMYSKCG-DVDDS 224

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           RLVF+ M  +N ++WT+++TGY+        + + KEM+L+ +  N  +++  + + +  
Sbjct: 225 RLVFDHMVNRNVITWTSMVTGYSQIEKPDEAMALVKEMVLQDLRPNCVTYNSLLSSFSGP 284

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC-LSDANQYFDEMTEKDLITWNTI 286
             +S+   +H  +I+ G  SN+ +  +++ +Y +    L D  +    +   D I WN +
Sbjct: 285 DCLSYCLQVHCCIIQLGLESNVYIAATLVTVYSKCSSSLEDFKKVCSVVMTCDNIAWNAV 344

Query: 287 IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           IAGY K G   E L  F +MK      + +T TS++ A    + L  G+ +HA I R G 
Sbjct: 345 IAGYSKLGRHEEALRCFHEMKQAGIDIDSYTLTSVVGAIGNSSFLEEGKAMHALIHRTGY 404

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             +L + N L+ MYA+CG I DS+++F  M + D+++W +++  +  HG+G+EA+ELF++
Sbjct: 405 ISHLNVQNGLVSMYARCGAIGDSKRVFWFMEEHDVISWNALLTAFAHHGYGREAVELFEQ 464

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNK-EIYGCVVDLLGRA 463
           M K+ ++P+   F+AVL ACSH G VD+G++YF +M +D  + P K E Y  +VD  GRA
Sbjct: 465 MRKTEIKPNSSTFLAVLCACSHVGFVDKGIEYFDTMKSDILLEPLKVEHYASLVDTFGRA 524

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G + EA   I SMP  P  SV+  LL A   H    +   +A ++L+L PN   TY++LS
Sbjct: 525 GYLNEAEAFINSMPIVPAPSVYKALLSASLVHGNREIAARSAKKLLELWPNDPATYVLLS 584

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSW 555
           ++   +G W++ A  RK+M   G +K+ G SW
Sbjct: 585 SVLTVDGNWDDAADLRKLMCDRGLRKKPGYSW 616



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 106/423 (25%), Positives = 207/423 (48%), Gaps = 12/423 (2%)

Query: 99  VFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA 158
           +  E  R+    N + L+ ++  C    S       H   +K G   ++Y+ ++++D+YA
Sbjct: 56  LIAEFTRHGSLSNPYFLNKIVSFCAKSGSFHLGIQAHSTILKLGFISNVYICSAVVDMYA 115

Query: 159 TCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFS 218
            C   + +AR++F+ M  +  V+W +LI GY         + +F +ML   + ++ +S S
Sbjct: 116 KCG-EISSARVLFDQMPQRTVVTWNSLIYGYLAVNCPKIAIELFIKMLKAAINVSAFSVS 174

Query: 219 IAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK 278
             +  C+       G  +H  ++K G G N+ V  S++DMY +   + D+   FD M  +
Sbjct: 175 SCLAGCSQLEAREVGTQVHGLILKTGLGYNVVVGTSLVDMYSKCGDVDDSRLVFDHMVNR 234

Query: 279 DLITWNTIIAGYEK-SGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
           ++ITW +++ GY +     E + +  +M  +   PNC T+ S++++ +    LS   QVH
Sbjct: 235 NVITWTSMVTGYSQIEKPDEAMALVKEMVLQDLRPNCVTYNSLLSSFSGPDCLSYCLQVH 294

Query: 338 AGIVRRGLDGNLALANALIDMYAKC-GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHG 396
             I++ GL+ N+ +A  L+ +Y+KC  ++ D +K+ S +   D + W +++ GY   G  
Sbjct: 295 CCIIQLGLESNVYIAATLVTVYSKCSSSLEDFKKVCSVVMTCDNIAWNAVIAGYSKLGRH 354

Query: 397 KEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCV 456
           +EA+  F EM ++G+  D     +V+ A  ++  ++EG      ++      +  +   +
Sbjct: 355 EEALRCFHEMKQAGIDIDSYTLTSVVGAIGNSSFLEEGKAMHALIHRTGYISHLNVQNGL 414

Query: 457 VDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAA-----LRVLDL 511
           V +  R G + ++  +   M  + D   W  LL A   H     G+ A      +R  ++
Sbjct: 415 VSMYARCGAIGDSKRVFWFME-EHDVISWNALLTAFAHH---GYGREAVELFEQMRKTEI 470

Query: 512 KPN 514
           KPN
Sbjct: 471 KPN 473



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 181/343 (52%), Gaps = 25/343 (7%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++ T+L+  Y   G ++++R +FD M  R+V++WT M+ GY+     ++A  +  EMV  
Sbjct: 206 VVGTSLVDMYSKCGDVDDSRLVFDHMVNRNVITWTSMVTGYSQIEKPDEAMALVKEMVLQ 265

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           ++ PN  T +S+L +  G   LS    VH   I+ GLE ++Y+  +L+ VY+ C  S+++
Sbjct: 266 DLRPNCVTYNSLLSSFSGPDCLSYCLQVHCCIIQLGLESNVYIAATLVTVYSKCSSSLED 325

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
            + V + +   ++++W  +I GY+  G     L  F EM   G++++ Y+ +  V A  +
Sbjct: 326 FKKVCSVVMTCDNIAWNAVIAGYSKLGRHEEALRCFHEMKQAGIDIDSYTLTSVVGAIGN 385

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
           + ++  GK +HA + + G+ S+L V N ++ MY R   + D+ + F  M E D+I+WN +
Sbjct: 386 SSFLEEGKAMHALIHRTGYISHLNVQNGLVSMYARCGAIGDSKRVFWFMEEHDVISWNAL 445

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           +  +   G   E + +F +M+     PN  TF +++ AC+           H G V +G+
Sbjct: 446 LTAFAHHGYGREAVELFEQMRKTEIKPNSSTFLAVLCACS-----------HVGFVDKGI 494

Query: 346 D------GNLALA-------NALIDMYAKCGNISDSQKIFSEM 375
           +       ++ L         +L+D + + G +++++   + M
Sbjct: 495 EYFDTMKSDILLEPLKVEHYASLVDTFGRAGYLNEAEAFINSM 537



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 104/214 (48%), Gaps = 3/214 (1%)

Query: 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIF 372
           N +    I++ CA   +   G Q H+ I++ G   N+ + +A++DMYAKCG IS ++ +F
Sbjct: 68  NPYFLNKIVSFCAKSGSFHLGIQAHSTILKLGFISNVYICSAVVDMYAKCGEISSARVLF 127

Query: 373 SEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD 432
            +M  R +VTW S++ GY A    K AIELF +M+K+ +        + L  CS     +
Sbjct: 128 DQMPQRTVVTWNSLIYGYLAVNCPKIAIELFIKMLKAAINVSAFSVSSCLAGCSQLEARE 187

Query: 433 EGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGAC 492
            G +    +    +  N  +   +VD+  + G V ++  +   M    +   W  ++   
Sbjct: 188 VGTQVHGLILKTGLGYNVVVGTSLVDMYSKCGDVDDSRLVFDHM-VNRNVITWTSMVTGY 246

Query: 493 KEHRLPN--LGKLAALRVLDLKPNMMGTYIILSN 524
            +   P+  +  +  + + DL+PN +    +LS+
Sbjct: 247 SQIEKPDEAMALVKEMVLQDLRPNCVTYNSLLSS 280


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 186/563 (33%), Positives = 304/563 (53%), Gaps = 3/563 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + T LI  Y      E+A  +F  M + ++++W+ +I  +       +A   F  M +  
Sbjct: 298 VGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEG 357

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + PN  T  S+L        L   + +H +  + GL+ +  + N+L++VY  C  S D+A
Sbjct: 358 ILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRC-ESPDDA 416

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R VF+ ++  N +SW ++I  Y         L +F+ M  +G++ +  +F   + AC   
Sbjct: 417 RTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIG 476

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
                 KL+H  V + G G +  V  S+++MY +   L  A     EM E+ +  WN +I
Sbjct: 477 SHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLI 536

Query: 288 AGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            GY   G S E L  + K++ E    +  TF S++ AC +  +L+ G+ +H+  V  GLD
Sbjct: 537 NGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLD 596

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            ++ + NAL +MY+KCG++ ++++IF  M  R  V+W  M+  Y  HG  +E ++L  +M
Sbjct: 597 SDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKM 656

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGR 465
            + GV+ + I F++VL++CSHAGL+ EG +YF S+ +D  +    E YGC+VDLLGRAG+
Sbjct: 657 EQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGK 716

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           ++EA + I  MP +P    W  LLGAC+  +  + GKLAA ++L+L P      ++LSNI
Sbjct: 717 LQEAEKYISKMPLEPGIVTWASLLGACRVQKDLDRGKLAAGKLLELDPGNSSASVVLSNI 776

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           Y+  G W+  AK R+ M     KK  G+S I+V++KV  F   D        +Y  +E L
Sbjct: 777 YSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEEL 836

Query: 586 IRHMNETAYEPDIDCLIHDLEGE 608
              M E  Y PD   ++HD++ E
Sbjct: 837 CFAMREAGYVPDTKMVLHDVDEE 859



 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 125/443 (28%), Positives = 230/443 (51%), Gaps = 11/443 (2%)

Query: 60  GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119
           G + +A   F ++  R+VVSW VMI+ Y+S+    +A  +F  M+   V PNA TL +VL
Sbjct: 6   GSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITLVAVL 65

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179
            +C   + L +  LVH ++++ G   +  V  +L+++Y  C   +D A+ VF +M  KN 
Sbjct: 66  NSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLD-AQSVFEEMAEKNV 124

Query: 180 VSWTTLITGYAHSGNGYG-GLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHA 238
           V+W  ++  Y+  G  +   + +F  MLLEGV+ N  +F   + +      +  GK IH+
Sbjct: 125 VTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFIHS 184

Query: 239 AVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY---EKSGS 295
            V +     ++ V  ++++ Y +   L+DA + FD M  + + TWN++I+ Y   E+SG 
Sbjct: 185 CVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSG- 243

Query: 296 SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
            E   +F +M+ E    +  TF SI+ AC     L  G+ V   I     + +L +  AL
Sbjct: 244 -EAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTAL 302

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           I MYA+C +  D+ ++F  M   +L+TW++++  +  HGH  EA+  F  M + G+ P+R
Sbjct: 303 ITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNR 362

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKS 475
           + F+++L   +    ++E  +    + ++ ++    +   +V++ GR     +A  +   
Sbjct: 363 VTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQ 422

Query: 476 MPFKPDESVWGPLLG---ACKEH 495
           +   P+   W  ++G    C+ H
Sbjct: 423 LEL-PNLISWNSMIGIYVQCERH 444



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 116/447 (25%), Positives = 221/447 (49%), Gaps = 3/447 (0%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T L+ +Y   G + +AR +FD MP R V +W  MI+ Y+      +A+ +F  M +    
Sbjct: 199 TALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGER 258

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
            +  T  S+L AC   ++L +   V     +   E  ++V  +L+ +YA  C S ++A  
Sbjct: 259 CDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTALITMYAR-CRSPEDAAQ 317

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           VF  MK  N ++W+ +IT +A  G+    L  F+ M  EG+  N  +F   +    +   
Sbjct: 318 VFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSG 377

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           +     IH  + +HG      + N+++++Y R +   DA   FD++   +LI+WN++I  
Sbjct: 378 LEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGI 437

Query: 290 YEK-SGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           Y +     + L +F  M+ +   P+   F +I+ AC   +     + VH  +   GL G+
Sbjct: 438 YVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEESGLGGS 497

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
             +  +L++MYAK G +  ++ I  EM ++ +  W  ++ GY  HG  +EA+E + ++  
Sbjct: 498 PLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAYQKLQL 557

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKE 468
             +  D++ F++VL AC+ +  + EG     +  +  ++ +  +   + ++  + G ++ 
Sbjct: 558 EAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMEN 617

Query: 469 AYELIKSMPFKPDESVWGPLLGACKEH 495
           A  +  SMP +   S W  +L A  +H
Sbjct: 618 ARRIFDSMPIRSAVS-WNGMLQAYAQH 643



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/452 (26%), Positives = 221/452 (48%), Gaps = 4/452 (0%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFN-CHNQAWTVFVEMV 104
           +++AT L+  Y   G + +A+++F+EM E++VV+W  M+  Y+    C   A  +F  M+
Sbjct: 93  TLVATALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAMLGVYSLQGCCWKLAVELFTRML 152

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
              V  N  T  +VL +     +L     +H    +      ++V  +L++ Y T C S+
Sbjct: 153 LEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTY-TKCGSL 211

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
            +AR VF+ M  ++  +W ++I+ Y+ S        +F+ M  EG   +  +F   + AC
Sbjct: 212 TDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDAC 271

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
            +   +  GK +  ++ +  F  +L V  +++ MY R     DA Q F  M + +LITW+
Sbjct: 272 VNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWS 331

Query: 285 TIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            II  +   G   E L  F  M+ E   PN  TF S++    T + L    ++H  I   
Sbjct: 332 AIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEH 391

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           GLD    + NAL+++Y +C +  D++ +F ++   +L++W SM+  Y       +A++LF
Sbjct: 392 GLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLF 451

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
             M + G++PDR+ FM +L AC+            + + +  +  +  +   +V++  +A
Sbjct: 452 RTMQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKA 511

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           G +  A  +++ M  +   + W  L+     H
Sbjct: 512 GELDVAEVILQEMD-EQQITAWNVLINGYALH 542



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 194/392 (49%), Gaps = 10/392 (2%)

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
           C S+ +A   F  ++ +N VSW  +I+ Y+   +    L +F  MLLEGV  N  +    
Sbjct: 5   CGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITLVAV 64

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           + +C S   +  G L+HA  ++ GF  N  V  ++L+MY +   L DA   F+EM EK++
Sbjct: 65  LNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNV 124

Query: 281 ITWNTIIAGYEKSGS--SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           +TWN ++  Y   G      + +F++M  E    N  TF +++ +     AL  G+ +H+
Sbjct: 125 VTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFIHS 184

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
            +       ++ +  AL++ Y KCG+++D++K+F  M  R + TW SM+  Y       E
Sbjct: 185 CVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGE 244

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVD 458
           A  +F  M + G R DR+ F+++L AC +   +  G    +S+++ +   +  +   ++ 
Sbjct: 245 AFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTALIT 304

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGK-LAALRVLD---LKPN 514
           +  R    ++A ++   M  + +   W  ++ A  +H   + G+ L   R++    + PN
Sbjct: 305 MYARCRSPEDAAQVFGRMK-QTNLITWSAIITAFADH--GHCGEALRYFRMMQQEGILPN 361

Query: 515 MMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546
            + T+I L N +      EE ++   ++   G
Sbjct: 362 RV-TFISLLNGFTTPSGLEELSRIHLLITEHG 392



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 121/236 (51%), Gaps = 3/236 (1%)

Query: 258 MYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFT 316
           MY R   L DA   F ++  +++++WN +I+ Y    S  E L +F  M  E  +PN  T
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
             +++ +C +   L  G  VHA  + RG   N  +A AL++MY KCG + D+Q +F EM+
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMA 120

Query: 377 DRDLVTWTSMMIGYGAHGHG-KEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGL 435
           ++++VTW +M+  Y   G   K A+ELF  M+  GV+ + I F+ VL +      + +G 
Sbjct: 121 EKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGK 180

Query: 436 KYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
                + +   + +  +   +V+   + G + +A ++   MP +     W  ++ A
Sbjct: 181 FIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCR-SVGTWNSMISA 235


>gi|225441775|ref|XP_002277828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Vitis vinifera]
          Length = 773

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 182/547 (33%), Positives = 305/547 (55%), Gaps = 2/547 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + T+LI  Y   G +  A  ++  +  +DV     MI+ Y    C  +A  VF+ ++ +
Sbjct: 215 FVGTSLISMYSRCGDLGAAEKVYSNLAYKDVRCLNFMISEYGKAGCGEKAIGVFLHLLGS 274

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + PN +T ++V+ AC G   +    ++HGM IK G    I V N+++ VY    + ++ 
Sbjct: 275 GLEPNDYTFTNVISACNGDIDVEVLRVLHGMCIKCGCGDEISVGNAIVSVYVKHGM-LEE 333

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A   F  M  +N VSWT L++GY  +GNG   L  F ++L  GV  +   F+  +  C+ 
Sbjct: 334 AEKSFCGMGERNLVSWTALLSGYVKNGNGKKALEGFSQILELGVGFDSCCFATLLDGCSE 393

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  G  IH  V+K G+  ++ V  +++D+Y +   L  A   F  + +K+++++N I
Sbjct: 394 CKNLGLGLQIHGFVVKLGYVHDVSVGTALIDLYAKCRKLRSARLVFHSLLDKNIVSFNAI 453

Query: 287 IAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           ++GY  +   + + +FS+++     P+  TF  +++  A  A L  G+ +HA I++ G +
Sbjct: 454 LSGYIGADEEDAMALFSQLRLADIKPDSVTFARLLSLSADQACLVKGKCLHAYIIKTGFE 513

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            N ++ NA+I MYAKCG+I D+ ++F  M+  D ++W +++  Y  HG G++A+ LF+EM
Sbjct: 514 ANPSVGNAVITMYAKCGSIGDACQLFYSMNYLDSISWNAVISAYALHGQGRKALILFEEM 573

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGR 465
            K    PD I  ++VL ACS++GL++EG   F  M + Y + P  E + C+VDLLGRAG 
Sbjct: 574 KKEEFVPDEITILSVLQACSYSGLLEEGFCLFNDMESKYGIKPEIEHFACMVDLLGRAGY 633

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           + EA   I   PF     +W  L+  CK H   N G++A+  +LDL P   G+YI++SN+
Sbjct: 634 LSEAMSFINRSPFSGSPLLWRTLVHVCKLHGDLNFGQIASKHLLDLAPEEAGSYILVSNL 693

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           YA  G   E A+ R +M  +   KE G SWIE+ +KV  F+A+DK    ++ +Y  L++L
Sbjct: 694 YAGGGMLNEAARVRTVMNDLKVSKEAGSSWIEIDNKVHQFVASDKDHPESKEIYAKLDLL 753

Query: 586 IRHMNET 592
              M + 
Sbjct: 754 KSEMKQN 760



 Score =  198 bits (503), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 119/451 (26%), Positives = 235/451 (52%), Gaps = 10/451 (2%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108
             NL+  Y     + +A+++FDEM  R+ ++WT +I G+   N     + +  EM     
Sbjct: 116 GNNLVNLYGKFNKLGDAQSVFDEMLVRNTITWTTLIKGHLQVNDVESVFRIAREMYWVGE 175

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
             N  T S +L+AC  +++L     +HG  IK G +  ++V  SL+ +Y+ C   +  A 
Sbjct: 176 EFNEHTCSVILQACDSLENLVRGEQIHGFVIKRGFDEDVFVGTSLISMYSRCG-DLGAAE 234

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            V++++ +K+      +I+ Y  +G G   +GVF  +L  G+E N Y+F+  + AC    
Sbjct: 235 KVYSNLAYKDVRCLNFMISEYGKAGCGEKAIGVFLHLLGSGLEPNDYTFTNVISACNGDI 294

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            V   +++H   IK G G  + V N+I+ +Y +   L +A + F  M E++L++W  +++
Sbjct: 295 DVEVLRVLHGMCIKCGCGDEISVGNAIVSVYVKHGMLEEAEKSFCGMGERNLVSWTALLS 354

Query: 289 GYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           GY K+G+  + L  FS++       +   F +++  C+    L  G Q+H  +V+ G   
Sbjct: 355 GYVKNGNGKKALEGFSQILELGVGFDSCCFATLLDGCSECKNLGLGLQIHGFVVKLGYVH 414

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY-GAHGHGKEAIELFDEM 406
           ++++  ALID+YAKC  +  ++ +F  + D+++V++ +++ GY GA    ++A+ LF ++
Sbjct: 415 DVSVGTALIDLYAKCRKLRSARLVFHSLLDKNIVSFNAILSGYIGA--DEEDAMALFSQL 472

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEG--LKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
             + ++PD + F  +L+  +    + +G  L  +     +  NP+  +   V+ +  + G
Sbjct: 473 RLADIKPDSVTFARLLSLSADQACLVKGKCLHAYIIKTGFEANPS--VGNAVITMYAKCG 530

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            + +A +L  SM +  D   W  ++ A   H
Sbjct: 531 SIGDACQLFYSMNYL-DSISWNAVISAYALH 560



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 117/447 (26%), Positives = 218/447 (48%), Gaps = 10/447 (2%)

Query: 86  GYTSFNCHN----QAWTVFVEMV----RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGM 137
           G+ S+  HN     + T    MV     ++ NP       +L+   G   L     +H  
Sbjct: 44  GFNSYPGHNAQDPNSKTTHSSMVYCNSDSDQNPLFNDWPQLLQISIGSGDLMLGQAIHAF 103

Query: 138 AIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYG 197
             K G +   +  N+L+++Y      + +A+ VF++M  +N ++WTTLI G+    +   
Sbjct: 104 LAKLGYQNDAFRGNNLVNLYGKFN-KLGDAQSVFDEMLVRNTITWTTLIKGHLQVNDVES 162

Query: 198 GLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILD 257
              + +EM   G E N ++ S+ ++AC S   +  G+ IH  VIK GF  ++ V  S++ 
Sbjct: 163 VFRIAREMYWVGEEFNEHTCSVILQACDSLENLVRGEQIHGFVIKRGFDEDVFVGTSLIS 222

Query: 258 MYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFT 316
           MY R   L  A + +  +  KD+   N +I+ Y K+G  E  + +F  +      PN +T
Sbjct: 223 MYSRCGDLGAAEKVYSNLAYKDVRCLNFMISEYGKAGCGEKAIGVFLHLLGSGLEPNDYT 282

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           FT++I+AC     +   + +H   ++ G    +++ NA++ +Y K G + +++K F  M 
Sbjct: 283 FTNVISACNGDIDVEVLRVLHGMCIKCGCGDEISVGNAIVSVYVKHGMLEEAEKSFCGMG 342

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
           +R+LV+WT+++ GY  +G+GK+A+E F ++++ GV  D   F  +L  CS    +  GL+
Sbjct: 343 ERNLVSWTALLSGYVKNGNGKKALEGFSQILELGVGFDSCCFATLLDGCSECKNLGLGLQ 402

Query: 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR 496
               +       +  +   ++DL  +  +++ A  +  S+  K   S    L G      
Sbjct: 403 IHGFVVKLGYVHDVSVGTALIDLYAKCRKLRSARLVFHSLLDKNIVSFNAILSGYIGADE 462

Query: 497 LPNLGKLAALRVLDLKPNMMGTYIILS 523
              +   + LR+ D+KP+ +    +LS
Sbjct: 463 EDAMALFSQLRLADIKPDSVTFARLLS 489


>gi|15218851|ref|NP_171853.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180299|sp|Q9LR69.1|PPR8_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g03540
 gi|9280645|gb|AAF86514.1|AC002560_7 F21B7.16 [Arabidopsis thaliana]
 gi|91805735|gb|ABE65596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189463|gb|AEE27584.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 609

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 193/557 (34%), Positives = 321/557 (57%), Gaps = 21/557 (3%)

Query: 9   YAATFH-CHKIPPIIK--QSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGL-IEE 64
           YA+    C+K+   I   Q    V KS +++D  +          +L+  YF  G  + E
Sbjct: 64  YASLLQTCNKVFSFIHGIQFHAHVVKSGLETDRNV--------GNSLLSLYFKLGPGMRE 115

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
            R +FD    +D +SWT M++GY +   H +A  VFVEMV   ++ N FTLSS +KAC  
Sbjct: 116 TRRVFDGRFVKDAISWTSMMSGYVTGKEHVKALEVFVEMVSFGLDANEFTLSSAVKACSE 175

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTT 184
           +  +      HG+ I  G E + ++ ++L  +Y      +D AR VF++M   + + WT 
Sbjct: 176 LGEVRLGRCFHGVVITHGFEWNHFISSTLAYLYGVNREPVD-ARRVFDEMPEPDVICWTA 234

Query: 185 LITGYAHSGNGYGGLGVFKEMLL-EGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH 243
           +++ ++ +      LG+F  M   +G+  +  +F   + AC +   +  GK IH  +I +
Sbjct: 235 VLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITN 294

Query: 244 GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMF 302
           G GSN+ V +S+LDMY +   + +A Q F+ M++K+ ++W+ ++ GY ++G  E  + +F
Sbjct: 295 GIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLGGYCQNGEHEKAIEIF 354

Query: 303 SKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362
            +M+ +    + + F +++ ACA LAA+  G+++H   VRRG  GN+ + +ALID+Y K 
Sbjct: 355 REMEEK----DLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALIDLYGKS 410

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
           G I  + +++S+MS R+++TW +M+     +G G+EA+  F++MVK G++PD I F+A+L
Sbjct: 411 GCIDSASRVYSKMSIRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYISFIAIL 470

Query: 423 TACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481
           TAC H G+VDEG  YF  M   Y + P  E Y C++DLLGRAG  +EA  L++    + D
Sbjct: 471 TACGHTGMVDEGRNYFVLMAKSYGIKPGTEHYSCMIDLLGRAGLFEEAENLLERAECRND 530

Query: 482 ESVWGPLLGACKEHR-LPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRK 540
            S+WG LLG C  +     + +  A R+++L+P    +Y++LSN+Y A G+  +    RK
Sbjct: 531 ASLWGVLLGPCAANADASRVAERIAKRMMELEPKYHMSYVLLSNMYKAIGRHGDALNIRK 590

Query: 541 IMRGMGSKKEVGMSWIE 557
           +M   G  K VG SWI+
Sbjct: 591 LMVRRGVAKTVGQSWID 607



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 138/285 (48%), Gaps = 4/285 (1%)

Query: 210 VEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFD-CLSDA 268
           +   P  ++  ++ C        G   HA V+K G  ++  V NS+L +Y +    + + 
Sbjct: 57  IPATPKLYASLLQTCNKVFSFIHGIQFHAHVVKSGLETDRNVGNSLLSLYFKLGPGMRET 116

Query: 269 NQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATL 327
            + FD    KD I+W ++++GY       + L +F +M S     N FT +S + AC+ L
Sbjct: 117 RRVFDGRFVKDAISWTSMMSGYVTGKEHVKALEVFVEMVSFGLDANEFTLSSAVKACSEL 176

Query: 328 AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMM 387
             +  G+  H  ++  G + N  +++ L  +Y       D++++F EM + D++ WT+++
Sbjct: 177 GEVRLGRCFHGVVITHGFEWNHFISSTLAYLYGVNREPVDARRVFDEMPEPDVICWTAVL 236

Query: 388 IGYGAHGHGKEAIELFDEMVK-SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV 446
             +  +   +EA+ LF  M +  G+ PD   F  VLTAC +   + +G +    +    +
Sbjct: 237 SAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGI 296

Query: 447 NPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
             N  +   ++D+ G+ G V+EA ++   M  K +   W  LLG 
Sbjct: 297 GSNVVVESSLLDMYGKCGSVREARQVFNGMS-KKNSVSWSALLGG 340



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 128/305 (41%), Gaps = 42/305 (13%)

Query: 296 SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
           +E + + +   S         + S++  C  + +   G Q HA +V+ GL+ +  + N+L
Sbjct: 43  TEAIRILNSTHSSEIPATPKLYASLLQTCNKVFSFIHGIQFHAHVVKSGLETDRNVGNSL 102

Query: 356 IDMYAKCG-NISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
           + +Y K G  + +++++F     +D ++WTSMM GY       +A+E+F EMV  G+  +
Sbjct: 103 LSLYFKLGPGMRETRRVFDGRFVKDAISWTSMMSGYVTGKEHVKALEVFVEMVSFGLDAN 162

Query: 415 RIVFMAVLTACSHAGLVDEG---------------------LKYFKSMNDYNVN------ 447
                + + ACS  G V  G                     L Y   +N   V+      
Sbjct: 163 EFTLSSAVKACSELGEVRLGRCFHGVVITHGFEWNHFISSTLAYLYGVNREPVDARRVFD 222

Query: 448 ----PNKEIYGCVVDLLGRAGRVKEA----YELIKSMPFKPDESVWGPLLGACKEHRLPN 499
               P+   +  V+    +    +EA    Y + +     PD S +G +L AC   R   
Sbjct: 223 EMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLK 282

Query: 500 LGKLAALRVLDLKPNMMGTYIIL-SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEV 558
            GK    +++    N +G+ +++ S++    GK     + R++  GM  K  V  SW  +
Sbjct: 283 QGKEIHGKLI---TNGIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKNSV--SWSAL 337

Query: 559 RDKVC 563
               C
Sbjct: 338 LGGYC 342


>gi|356503704|ref|XP_003520645.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 855

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 191/555 (34%), Positives = 304/555 (54%), Gaps = 6/555 (1%)

Query: 47  ILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           ++A N LI  Y   G I  A  +F  +  +D++SW  MI G+T      +A  +F +M R
Sbjct: 293 LIAQNALISMYTRFGQIVHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFR 352

Query: 106 NEV-NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
                PN F   SV  AC+ +        +HGM  K GL  +++   SL D+YA     +
Sbjct: 353 QGFYQPNEFIFGSVFSACRSLLEPEFGRQIHGMCAKFGLGRNVFAGCSLCDMYAKFGF-L 411

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
            +A   F  ++  + VSW  +I  ++ SG+    +  F +M+  G+  +  +F   + AC
Sbjct: 412 PSAIRAFYQIESPDLVSWNAIIAAFSDSGDVNEAIYFFCQMMHTGLMPDGITFLSLLCAC 471

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLITW 283
            S   ++ G  IH+ +IK G      V NS+L MY +   L DA   F +++E  +L++W
Sbjct: 472 GSPVTINQGTQIHSYIIKIGLDKEAAVCNSLLTMYTKCSNLHDAFNVFKDVSENANLVSW 531

Query: 284 NTII-AGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N I+ A  +   + E   +F  M      P+  T T+I+  CA LA+L  G QVH   V+
Sbjct: 532 NAILSACLQHKQAGEVFRLFKLMLFSENKPDNITITTILGTCAELASLEVGNQVHCFSVK 591

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            GL  +++++N LIDMYAKCG++  ++ +F    + D+V+W+S+++GY   G G EA+ L
Sbjct: 592 SGLVVDVSVSNRLIDMYAKCGSLKHARDVFGSTQNPDIVSWSSLIVGYAQFGLGHEALNL 651

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLG 461
           F  M   GV+P+ + ++ VL+ACSH GLV+EG  ++ +M  +  + P +E   C+VDLL 
Sbjct: 652 FRMMKNLGVQPNEVTYLGVLSACSHIGLVEEGWHFYNTMEIELGIPPTREHVSCMVDLLA 711

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           RAG + EA   IK M F PD ++W  LL +CK H   ++ + AA  +L L P+     ++
Sbjct: 712 RAGCLYEAENFIKKMGFNPDITMWKTLLASCKTHGNVDIAERAAENILKLDPSNSAALVL 771

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGV 581
           LSNI+A+ G W+E A+ R +M+ MG +K  G SWI V+D++  F + D        +Y +
Sbjct: 772 LSNIHASVGNWKEVARLRNLMKQMGVQKVPGQSWIAVKDQIHVFFSEDNSHQQRGDIYTM 831

Query: 582 LEMLIRHMNETAYEP 596
           LE L   M +  Y+P
Sbjct: 832 LEDLWLQMLDDGYDP 846



 Score =  208 bits (530), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 130/494 (26%), Positives = 241/494 (48%), Gaps = 25/494 (5%)

Query: 19  PPIIKQSLQSVKKSSIQSDPPL----IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPE 74
           PP+   SL   K  S ++ P L     P  P      +    F +GL        DE+P 
Sbjct: 58  PPLRALSLPIPKPCSARTTPFLRTWRTPPWPKPCGGRISPLGFSDGL--------DEIPC 109

Query: 75  RDVV-----SWTVMIAGYTSFNC----HNQAWTVFVEMVRNE-VNPNAFTLSSVLKACKG 124
           + V      S  +    Y +  C    + +A   F    +N  +   + T  +++ AC  
Sbjct: 110 QFVCLIKQHSRELSTNSYINLMCKQRHYREALDTFNFHPKNSSIQLESSTYGNLILACTS 169

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTT 184
           ++SL     +H   +K   +  + ++N ++++Y  C  S+ +AR  F+ M+ +N VSWT 
Sbjct: 170 IRSLKYGKKIHDHILKSNCQPDLVLQNHILNMYGKCG-SLKDARKAFDTMQLRNVVSWTI 228

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG 244
           +I+GY+ +G     + ++ +ML  G   +P +F   ++AC   G +  G+ +H  VIK G
Sbjct: 229 MISGYSQNGQENDAIIMYIQMLQSGYFPDPLTFGSIIKACCIAGDIDLGRQLHGHVIKSG 288

Query: 245 FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFS 303
           +  +L   N+++ MY RF  +  A+  F  ++ KDLI+W ++I G+ + G   E L +F 
Sbjct: 289 YDHHLIAQNALISMYTRFGQIVHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFR 348

Query: 304 KMKSERF-SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362
            M  + F  PN F F S+ +AC +L     G+Q+H    + GL  N+    +L DMYAK 
Sbjct: 349 DMFRQGFYQPNEFIFGSVFSACRSLLEPEFGRQIHGMCAKFGLGRNVFAGCSLCDMYAKF 408

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
           G +  + + F ++   DLV+W +++  +   G   EAI  F +M+ +G+ PD I F+++L
Sbjct: 409 GFLPSAIRAFYQIESPDLVSWNAIIAAFSDSGDVNEAIYFFCQMMHTGLMPDGITFLSLL 468

Query: 423 TACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDE 482
            AC     +++G +    +    ++    +   ++ +  +   + +A+ + K +    + 
Sbjct: 469 CACGSPVTINQGTQIHSYIIKIGLDKEAAVCNSLLTMYTKCSNLHDAFNVFKDVSENANL 528

Query: 483 SVWGPLLGACKEHR 496
             W  +L AC +H+
Sbjct: 529 VSWNAILSACLQHK 542


>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
          Length = 704

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 173/497 (34%), Positives = 290/497 (58%), Gaps = 3/497 (0%)

Query: 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFND 173
           T  +++ AC G+KS+     V    I  GL+   Y+ N ++ ++  C + +D AR +F++
Sbjct: 133 TYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMID-ARRLFDE 191

Query: 174 MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG 233
           M  KN +SW T+I G   +G+ +    +F  M     +     F   +RA A  G +  G
Sbjct: 192 MPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAGSRMFVTMIRASAGLGLIFAG 251

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
           + +H+  +K G G ++ V  +++DMY +   + DA   FD+M EK  + WN+IIAGY   
Sbjct: 252 RQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALH 311

Query: 294 G-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
           G S E L+M+ +M+      + FTF+ II  CA LA+L   +Q HAG+VR G   ++   
Sbjct: 312 GYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVAN 371

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
            AL+D+Y+K G I D++ +F  M  +++++W +++ GYG HG G EA+E+F+ M+  G+ 
Sbjct: 372 TALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMV 431

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471
           P+ + F+AVL+ACS++GL D G + F+SM+ D+ + P    Y C+++LLGR G + EA+ 
Sbjct: 432 PNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 491

Query: 472 LIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK 531
           LIK  PFKP  ++W  LL AC+ H+   LGK AA ++  + P  +  Y++L NIY   G+
Sbjct: 492 LIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYNXSGR 551

Query: 532 WEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNE 591
            EE A   + ++  G +     SWIE++ +  GFI+ DK  + ++ +Y  L+ L+  +++
Sbjct: 552 LEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSKEIYQKLDELMLEISK 611

Query: 592 TAYEPDIDCLIHDLEGE 608
             Y P    L+ D++ +
Sbjct: 612 HGYVPQXKFLLPDVDEQ 628



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/422 (27%), Positives = 214/422 (50%), Gaps = 44/422 (10%)

Query: 60  GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119
           G++ +AR LFDEMPE++++SW  +I G      + +A+ +F+ M +   +  +    +++
Sbjct: 180 GMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAGSRMFVTMI 239

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179
           +A  G+  +     +H  ++K G+ G ++V  +L+D+Y+ C  S+++A+ VF+ M  K  
Sbjct: 240 RASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCG-SIEDAQCVFDQMPEKTT 298

Query: 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAA 239
           V W ++I GYA  G     L ++ EM   GV+++ ++FSI +R CA    +   K  HA 
Sbjct: 299 VGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAG 358

Query: 240 VIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-EC 298
           +++HGFG ++    +++D+Y ++  + DA   FD M  K++I+WN +IAGY   G   E 
Sbjct: 359 LVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEA 418

Query: 299 LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDM 358
           + MF +M  E   PN  TF ++++AC+           ++G+  RG +            
Sbjct: 419 VEMFERMLHEGMVPNHVTFLAVLSACS-----------YSGLSDRGWE------------ 455

Query: 359 YAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI--ELFDEMVKSGVRPDRI 416
                       IF  MS    +   +M         G+E +  E F  +  +  +P   
Sbjct: 456 ------------IFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVN 503

Query: 417 VFMAVLTACS-HAGLVDEGLKYFKSMNDYNVNPNK-EIYGCVVDLLGRAGRVKEAYELIK 474
           ++ A+LTAC  H       L  F +   Y + P K   Y  ++++   +GR++EA  +I+
Sbjct: 504 MWAALLTACRVHKNF---ELGKFAAEKLYGMGPEKLSNYVVLLNIYNXSGRLEEAAAVIQ 560

Query: 475 SM 476
           ++
Sbjct: 561 TL 562



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/311 (30%), Positives = 155/311 (49%), Gaps = 25/311 (8%)

Query: 198 GLGVFKEMLLEGV-EMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSIL 256
            L +F+ + L G  +M+  ++   V AC     +   K +   +I  G   +  + N +L
Sbjct: 114 ALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVL 173

Query: 257 DMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCF 315
            M+ +   + DA + FDEM EK++++WNTII G   +G   E   +F  M          
Sbjct: 174 LMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAGSR 233

Query: 316 TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEM 375
            F ++I A A L  +  G+Q+H+  ++ G+ G++ +A ALIDMY+KCG+I D+Q +F +M
Sbjct: 234 MFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQM 293

Query: 376 SDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTAC---------- 425
            ++  V W S++ GY  HG+ +EA+ ++ EM  SGV+ D   F  ++  C          
Sbjct: 294 PEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAK 353

Query: 426 -SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESV 484
            +HAGLV  G        D   N        +VDL  + GR+++A  +   MP K   S 
Sbjct: 354 QAHAGLVRHGFGL-----DIVANT------ALVDLYSKWGRIEDAKHVFDMMPHKNVIS- 401

Query: 485 WGPLLGACKEH 495
           W  L+     H
Sbjct: 402 WNALIAGYGNH 412



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 100/185 (54%), Gaps = 1/185 (0%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   +A  LI  Y   G IE+A+ +FD+MPE+  V W  +IAGY       +A +++ EM
Sbjct: 265 GDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEM 324

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
             + V  + FT S +++ C  + SL +A   H   ++ G    I    +L+D+Y+     
Sbjct: 325 RDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWG-R 383

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +++A+ VF+ M  KN +SW  LI GY + G G   + +F+ ML EG+  N  +F   + A
Sbjct: 384 IEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSA 443

Query: 224 CASTG 228
           C+ +G
Sbjct: 444 CSYSG 448


>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic [Vitis vinifera]
          Length = 704

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 173/497 (34%), Positives = 291/497 (58%), Gaps = 3/497 (0%)

Query: 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFND 173
           T  +++ AC G+KS+     V    I  GL+   Y+ N ++ ++  C + +D AR +F++
Sbjct: 133 TYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMID-ARRLFDE 191

Query: 174 MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG 233
           M  KN +SW T+I G   +G+ +    +F  M  +  +     F   +RA A  G +  G
Sbjct: 192 MPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMFVTMIRASAGLGLIFAG 251

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
           + +H+  +K G G ++ V  +++DMY +   + DA   FD+M EK  + WN+IIAGY   
Sbjct: 252 RQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALH 311

Query: 294 G-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
           G S E L+M+ +M+      + FTF+ II  CA LA+L   +Q HAG+VR G   ++   
Sbjct: 312 GYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVAN 371

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
            AL+D+Y+K G I D++ +F  M  +++++W +++ GYG HG G EA+E+F+ M+  G+ 
Sbjct: 372 TALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMV 431

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471
           P+ + F+AVL+ACS++GL D G + F+SM+ D+ + P    Y C+++LLGR G + EA+ 
Sbjct: 432 PNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 491

Query: 472 LIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK 531
           LIK  PFKP  ++W  LL AC+ H+   LGK AA ++  + P  +  Y++L NIY   G+
Sbjct: 492 LIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYNRSGR 551

Query: 532 WEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNE 591
            EE A   + ++  G +     SWIE++ +  GFI+ DK  + ++ +Y  L+ L+  +++
Sbjct: 552 LEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSKEIYQKLDELMLEISK 611

Query: 592 TAYEPDIDCLIHDLEGE 608
             Y P    L+ D++ +
Sbjct: 612 HGYVPQDKFLLPDVDEQ 628



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 117/422 (27%), Positives = 216/422 (51%), Gaps = 44/422 (10%)

Query: 60  GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119
           G++ +AR LFDEMPE++++SW  +I G      + +A+ +F+ M ++  +  +    +++
Sbjct: 180 GMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMFVTMI 239

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179
           +A  G+  +     +H  ++K G+ G ++V  +L+D+Y+ C  S+++A+ VF+ M  K  
Sbjct: 240 RASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCG-SIEDAQCVFDQMPEKTT 298

Query: 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAA 239
           V W ++I GYA  G     L ++ EM   GV+++ ++FSI +R CA    +   K  HA 
Sbjct: 299 VGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAG 358

Query: 240 VIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-EC 298
           +++HGFG ++    +++D+Y ++  + DA   FD M  K++I+WN +IAGY   G   E 
Sbjct: 359 LVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEA 418

Query: 299 LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDM 358
           + MF +M  E   PN  TF ++++AC+           ++G+  RG +            
Sbjct: 419 VEMFERMLHEGMVPNHVTFLAVLSACS-----------YSGLSDRGWE------------ 455

Query: 359 YAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI--ELFDEMVKSGVRPDRI 416
                       IF  MS    +   +M         G+E +  E F  +  +  +P   
Sbjct: 456 ------------IFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVN 503

Query: 417 VFMAVLTACS-HAGLVDEGLKYFKSMNDYNVNPNK-EIYGCVVDLLGRAGRVKEAYELIK 474
           ++ A+LTAC  H       L  F +   Y + P K   Y  ++++  R+GR++EA  +I+
Sbjct: 504 MWAALLTACRVHKNF---ELGKFAAEKLYGMGPEKLSNYVVLLNIYNRSGRLEEAAAVIQ 560

Query: 475 SM 476
           ++
Sbjct: 561 TL 562



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/311 (30%), Positives = 156/311 (50%), Gaps = 25/311 (8%)

Query: 198 GLGVFKEMLLEGV-EMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSIL 256
            L +F+ + L G  +M+  ++   V AC     +   K +   +I  G   +  + N +L
Sbjct: 114 ALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVL 173

Query: 257 DMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCF 315
            M+ +   + DA + FDEM EK++++WNTII G   +G   E   +F  M  +       
Sbjct: 174 LMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSR 233

Query: 316 TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEM 375
            F ++I A A L  +  G+Q+H+  ++ G+ G++ +A ALIDMY+KCG+I D+Q +F +M
Sbjct: 234 MFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQM 293

Query: 376 SDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTAC---------- 425
            ++  V W S++ GY  HG+ +EA+ ++ EM  SGV+ D   F  ++  C          
Sbjct: 294 PEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAK 353

Query: 426 -SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESV 484
            +HAGLV  G        D   N        +VDL  + GR+++A  +   MP K   S 
Sbjct: 354 QAHAGLVRHGFGL-----DIVANT------ALVDLYSKWGRIEDAKHVFDMMPHKNVIS- 401

Query: 485 WGPLLGACKEH 495
           W  L+     H
Sbjct: 402 WNALIAGYGNH 412



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 160/377 (42%), Gaps = 48/377 (12%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   +A  LI  Y   G IE+A+ +FD+MPE+  V W  +IAGY       +A +++ EM
Sbjct: 265 GDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEM 324

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
             + V  + FT S +++ C  + SL +A   H   ++ G    I    +L+D+Y+     
Sbjct: 325 RDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWG-R 383

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +++A+ VF+ M  KN +SW  LI GY + G G   + +F+ ML EG+  N  +F   + A
Sbjct: 384 IEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSA 443

Query: 224 CASTGWVSFGKLIHAAVIK-HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           C+ +G    G  I  ++ + H           ++++  R   L +A              
Sbjct: 444 CSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEA-------------- 489

Query: 283 WNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
                              F+ +K   F P    + +++ AC        G+     +  
Sbjct: 490 -------------------FALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYG 530

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDL-----VTWTSM-------MIGY 390
            G +  L+    L+++Y + G + ++  +   +  R L      +W  +       + G 
Sbjct: 531 MGPE-KLSNYVVLLNIYNRSGRLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGD 589

Query: 391 GAHGHGKEAIELFDEMV 407
             H   KE  +  DE++
Sbjct: 590 KCHAQSKEIYQKLDELM 606


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 209/622 (33%), Positives = 320/622 (51%), Gaps = 61/622 (9%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCH-NQAWTV 99
           +P+  S+    +I  Y        AR LFD+MPERD+ SW VM+ GY   NC    A  +
Sbjct: 75  MPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVR-NCRLGDARRL 133

Query: 100 FVEMVRNEV------------NPNAFTLSSVLKACKGMKSLS----NAALVHGMAIKEGL 143
           F  M   +V            N        V        S+S     AA VH   I+E  
Sbjct: 134 FDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEAC 193

Query: 144 EGSIYVENSLMDVYATCCI--------SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNG 195
              ++   S  D+ +  C+         + +AR +F+ M  ++ +SW T+I+GYA  G  
Sbjct: 194 --LLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGG-- 249

Query: 196 YGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW----------------VSFGKLIHAA 239
             GL   + +  E    + ++++  V      G                 VS+  +I   
Sbjct: 250 --GLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGY 307

Query: 240 V-------IKHGFGS----NLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
           V        +  F S    N+   N+++  Y +   ++ A ++FD M ++D ++W  IIA
Sbjct: 308 VQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIA 367

Query: 289 GYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           GY +SG   E LNMF ++K +  S N  TF   ++ CA +AAL  G+Q+H   V+ G   
Sbjct: 368 GYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGT 427

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
              + NAL+ MY KCG+I ++   F  + ++D+V+W +M+ GY  HG G++A+ +F+ M 
Sbjct: 428 GCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMK 487

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRV 466
            +GV+PD I  + VL+ACSH GL+D G +YF SM  DY V P  + Y C++DLLGRAGR+
Sbjct: 488 TAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRL 547

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
           +EA +LI++MPF+P  + WG LLGA + H    LG+ AA  V  ++P   G Y++LSN+Y
Sbjct: 548 EEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLY 607

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           AA G+W +  K R  MR +G +K  G SW+EV++K+  F   D      + +Y  LE L 
Sbjct: 608 AASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELD 667

Query: 587 RHMNETAYEPDIDCLIHDLEGE 608
             M E  Y      ++HD+E E
Sbjct: 668 LKMREEGYVSLTKLVLHDVEEE 689



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 118/508 (23%), Positives = 221/508 (43%), Gaps = 40/508 (7%)

Query: 25  SLQSVKKSSIQSDPPLIPKGPSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVM 83
           S  + +  S+ ++     K P IL  N  I ++   G  + A  +F+ MP R  VS+  M
Sbjct: 27  STSTRRSESVTNNNKPRVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAM 86

Query: 84  IAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGL 143
           I+GY   +  N A  +F +M   ++      L+  ++ C+    L +A  +  +      
Sbjct: 87  ISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCR----LGDARRLFDLMP---- 138

Query: 144 EGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFK 203
           E  +   NSL+  YA     +D AR VF++M  KN +SW  L+  Y H+G       +F+
Sbjct: 139 EKDVVSWNSLLSGYAQNGY-VDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFE 197

Query: 204 EMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVM-----NSILDM 258
                    +   + +    C   G+V   KL  A  +       +PV      N+++  
Sbjct: 198 ---------SKSDWDLISWNCLMGGFVRKKKLGDARWLF----DKMPVRDAISWNTMISG 244

Query: 259 YCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTF 317
           Y +   LS A + FDE   +D+ TW  +++GY ++G   E    F +M  +    N  ++
Sbjct: 245 YAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEK----NEVSY 300

Query: 318 TSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD 377
            ++IA       +   +++   +  R    N++  N +I  Y + G+I+ ++K F  M  
Sbjct: 301 NAMIAGYVQTKKMDIARELFESMPCR----NISSWNTMITGYGQIGDIAQARKFFDMMPQ 356

Query: 378 RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY 437
           RD V+W +++ GY   GH +EA+ +F E+ + G   +R  F   L+ C+    ++ G + 
Sbjct: 357 RDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQI 416

Query: 438 FKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
                         +   ++ +  + G + EA +  + +  K D   W  +L     H  
Sbjct: 417 HGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEK-DVVSWNTMLAGYARHGF 475

Query: 498 PN--LGKLAALRVLDLKPNMMGTYIILS 523
               L    +++   +KP+ +    +LS
Sbjct: 476 GRQALTVFESMKTAGVKPDEITMVGVLS 503



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/300 (21%), Positives = 136/300 (45%), Gaps = 31/300 (10%)

Query: 274 EMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSC 332
            + + D++ WN  I+ + ++G  +  L++F+ M       +  ++ ++I+     +  + 
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRR----SSVSYNAMISGYLRNSKFNL 98

Query: 333 GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA 392
            + +   +  R    +L   N ++  Y +   + D++++F  M ++D+V+W S++ GY  
Sbjct: 99  ARNLFDQMPER----DLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQ 154

Query: 393 HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEI 452
           +G+  EA E+FD M +     + I +  +L A  H G ++E    F+S +D+++      
Sbjct: 155 NGYVDEAREVFDNMPEK----NSISWNGLLAAYVHNGRIEEACLLFESKSDWDLIS---- 206

Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLK 512
           + C++    R  ++ +A  L   MP + D   W  ++    +      G   A R+ D  
Sbjct: 207 WNCLMGGFVRKKKLGDARWLFDKMPVR-DAISWNTMISGYAQ----GGGLSQARRLFDES 261

Query: 513 PNM-MGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKM 571
           P   + T+  + + Y   G  +E   F      M  K EV  + +     + G++   KM
Sbjct: 262 PTRDVFTWTAMVSGYVQNGMLDEAKTF---FDEMPEKNEVSYNAM-----IAGYVQTKKM 313



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 61/140 (43%), Gaps = 39/140 (27%)

Query: 427 HAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVW 485
           + GL+D G +YF  MN+ Y+V P  + Y C++DLLGR  R++E                 
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE----------------- 818

Query: 486 GPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545
           G LLGA + H    LG+ AA     + P   G                        MR +
Sbjct: 819 GALLGASRIHGNTELGEKAAQMFFKMGPQNSGI---------------------SKMRDV 857

Query: 546 GSKKEVGMSWIEVRDKVCGF 565
           G +K  G SW EV++K+  F
Sbjct: 858 GVQKVPGYSWFEVQNKIHTF 877


>gi|222624541|gb|EEE58673.1| hypothetical protein OsJ_10095 [Oryza sativa Japonica Group]
          Length = 669

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 181/501 (36%), Positives = 285/501 (56%), Gaps = 35/501 (6%)

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P    L    K+C     L     +H    + GL+G+++V +S + +YA C    D+A  
Sbjct: 10  PGPLHLPVGFKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCG-RPDDAYQ 68

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           +F +M++++ VSW  +I+G+AH+G     + VF+E++       P + ++A         
Sbjct: 69  MFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCP-KPDAGTMA--------- 118

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
                            S LP M        R + ++     FDEM  K LI+WN ++A 
Sbjct: 119 -----------------SILPSMGK-----ARVEDIALLKGVFDEMRFKGLISWNAMLAV 156

Query: 290 YEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           Y  +    E + +F +M+ +   P+  T  +++ +C  ++ALS G+++H  I RR +  +
Sbjct: 157 YTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSS 216

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           + L NAL+DMYA CG + +++ +F  M  RD+V+WTS++  YG HGHG+EAI+LF++M  
Sbjct: 217 MLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCG 276

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVK 467
            G+ PD I F+A+L ACSHAGL+D G  YF SM +++++ P  E Y C+VDLLGRAG ++
Sbjct: 277 QGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIR 336

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527
           EAY+ I  MP KP+E VWG LLGAC+ H   ++G LAA  +L L P   G Y++LSNIYA
Sbjct: 337 EAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTGYYVLLSNIYA 396

Query: 528 AEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIR 587
             G+W + +  R +M   G KK  G+S  E+ D+V  F   D     ++ +Y  L  L+R
Sbjct: 397 RAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTSHPQSKMIYKKLSELLR 456

Query: 588 HMNETAYEPDIDCLIHDLEGE 608
            + E  Y P+++  +HD+E E
Sbjct: 457 RIREMGYNPEVEATLHDVEEE 477



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 141/294 (47%), Gaps = 36/294 (12%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   +A + I  Y   G  ++A  +F+EM  RDVVSW  MI+G+       +A  VF E+
Sbjct: 45  GNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFREL 104

Query: 104 VRNEV-NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           V  +   P+A T++S+L +  G   + + AL+ G                          
Sbjct: 105 VALQCPKPDAGTMASILPSM-GKARVEDIALLKG-------------------------- 137

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
                  VF++M++K  +SW  ++  Y ++      + +F  M  +G+E +  + +  + 
Sbjct: 138 -------VFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLP 190

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           +C     +S GK IH  + +    S++ + N+++DMY    CL +A   FD M  +D+++
Sbjct: 191 SCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVS 250

Query: 283 WNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ 335
           W +II+ Y + G   E +++F KM  +   P+   F +I+AAC+    L  G+ 
Sbjct: 251 WTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKH 304



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 117/209 (55%), Gaps = 4/209 (1%)

Query: 66  RTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGM 125
           + +FDEM  + ++SW  M+A YT+   H +A  +F+ M ++ + P+A TL++VL +C  +
Sbjct: 136 KGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEV 195

Query: 126 KSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNARLVFNDMKWKNDVSWTT 184
            +LS    +H +  +  +  S+ +EN+LMD+YA C C+    AR VF+ M  ++ VSWT+
Sbjct: 196 SALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLK--EARDVFDSMGTRDVVSWTS 253

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGK-LIHAAVIKH 243
           +I+ Y   G+G   + +F++M  +G+E +  +F   + AC+  G +  GK   ++   + 
Sbjct: 254 IISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEF 313

Query: 244 GFGSNLPVMNSILDMYCRFDCLSDANQYF 272
                L     ++D+  R  C+ +A  + 
Sbjct: 314 HIAPKLEHYACMVDLLGRAGCIREAYDFI 342



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 128/288 (44%), Gaps = 34/288 (11%)

Query: 209 GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDA 268
           G+   P    +  ++CA+T  +  G+ IH++  + G   N+ V +S + MY R     DA
Sbjct: 7   GLLPGPLHLPVGFKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDA 66

Query: 269 NQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLA 328
            Q F+EM  +D+++WN +I+G+  +G                      F   +     L 
Sbjct: 67  YQMFEEMQYRDVVSWNAMISGFAHAG---------------------LFGRAMDVFRELV 105

Query: 329 ALSCGQQVHAGIVRRGLDGNLALANALIDM-YAKCGNISDSQKIFSEMSDRDLVTWTSMM 387
           AL C +   AG           +A+ L  M  A+  +I+  + +F EM  + L++W +M+
Sbjct: 106 ALQCPKP-DAG----------TMASILPSMGKARVEDIALLKGVFDEMRFKGLISWNAML 154

Query: 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN 447
             Y  +    EA+ELF  M K G+ PD +    VL +C     +  G +  + +    + 
Sbjct: 155 AVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMC 214

Query: 448 PNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            +  +   ++D+    G +KEA ++  SM  + D   W  ++ A   H
Sbjct: 215 SSMLLENALMDMYANCGCLKEARDVFDSMGTR-DVVSWTSIISAYGRH 261


>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
          Length = 553

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 183/527 (34%), Positives = 299/527 (56%), Gaps = 24/527 (4%)

Query: 91  NCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVE 150
           +CH   + + +++   ++         +LK C  +  L     +H   +K  L  S ++ 
Sbjct: 38  SCHGWIYVLEMKLRALKIREMEDMFVPILKDCPNIVELKK---IHAHIVKFSLSQSSFLV 94

Query: 151 NSLMDV---YATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLL 207
             ++DV   Y       + A L+F  +   N   +  +I  Y H+      + V+K+ML 
Sbjct: 95  TKMVDVCNHYG----ETEYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLG 150

Query: 208 EGVEMNP-----YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRF 262
                NP     ++F   V++CA       GK +H  V K G  SN  V NS+++MY + 
Sbjct: 151 NPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKC 210

Query: 263 DCLSDANQYFDEMTEKD--LITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTS 319
           D L DA++ F+EMTE+D  + +W  I++GY + G  ++ L  F +M+     P+  +  S
Sbjct: 211 DSLDDAHRVFEEMTERDATIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVS 270

Query: 320 IIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD 379
           ++  CA L AL  G+ +H    + G   N+ + NALI+MYAKCG+I   +++F +M +RD
Sbjct: 271 VLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERD 330

Query: 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439
           +++W++M++G   HG  +EAIELF EM K+ + P  I F+ +LTAC+HAGL++EGL+YF+
Sbjct: 331 VISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFE 390

Query: 440 SM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLP 498
           SM  DYN+ P  E YGC+V+LLG +GR+ +A EL+K MP KPD  +WG LL +C+ H   
Sbjct: 391 SMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNL 450

Query: 499 NLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEV 558
            +  +A   +L+L+P   G Y++LSN+YA  GKW+  ++ RK+MR    KK  G S IEV
Sbjct: 451 KIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEV 510

Query: 559 RDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDL 605
            + V  F + D     ++ +  VL++L+ H ++      I+ ++HD+
Sbjct: 511 DNMVQEFASGDDSKPFSKAICRVLKLLVMHQSKI-----IEIMVHDI 552



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 105/193 (54%), Gaps = 3/193 (1%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERD--VVSWTVMIAGYTSFNCHNQAWTVF 100
           K  +++  +L++ Y     +++A  +F+EM ERD  + SWT +++GY    C+  A   F
Sbjct: 194 KSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDATIFSWTAIVSGYARIGCYADALEFF 253

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
             M    + P+  +L SVL  C  + +L     +H  A K G   +I V N+L+++YA C
Sbjct: 254 RRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKC 313

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
             S+D  R +F+ MK ++ +SW+T+I G A+ G     + +F+EM    +E +  +F   
Sbjct: 314 G-SIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGL 372

Query: 221 VRACASTGWVSFG 233
           + ACA  G ++ G
Sbjct: 373 LTACAHAGLLNEG 385


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 209/622 (33%), Positives = 320/622 (51%), Gaps = 61/622 (9%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCH-NQAWTV 99
           +P+  S+    +I  Y        AR LFD+MPERD+ SW VM+ GY   NC    A  +
Sbjct: 75  MPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVR-NCRLGDARRL 133

Query: 100 FVEMVRNEV------------NPNAFTLSSVLKACKGMKSLS----NAALVHGMAIKEGL 143
           F  M   +V            N        V        S+S     AA VH   I+E  
Sbjct: 134 FDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEAC 193

Query: 144 EGSIYVENSLMDVYATCCI--------SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNG 195
              ++   S  D+ +  C+         + +AR +F+ M  ++ +SW T+I+GYA  G  
Sbjct: 194 --LLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGG-- 249

Query: 196 YGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW----------------VSFGKLIHAA 239
             GL   + +  E    + ++++  V      G                 VS+  +I   
Sbjct: 250 --GLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGY 307

Query: 240 V-------IKHGFGS----NLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
           V        +  F S    N+   N+++  Y +   ++ A ++FD M ++D ++W  IIA
Sbjct: 308 VQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIA 367

Query: 289 GYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           GY +SG   E LNMF ++K +  S N  TF   ++ CA +AAL  G+Q+H   V+ G   
Sbjct: 368 GYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGT 427

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
              + NAL+ MY KCG+I ++   F  + ++D+V+W +M+ GY  HG G++A+ +F+ M 
Sbjct: 428 GCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMK 487

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRV 466
            +GV+PD I  + VL+ACSH GL+D G +YF SM  DY V P  + Y C++DLLGRAGR+
Sbjct: 488 TAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRL 547

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
           +EA +LI++MPF+P  + WG LLGA + H    LG+ AA  V  ++P   G Y++LSN+Y
Sbjct: 548 EEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLY 607

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           AA G+W +  K R  MR +G +K  G SW+EV++K+  F   D      + +Y  LE L 
Sbjct: 608 AASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELD 667

Query: 587 RHMNETAYEPDIDCLIHDLEGE 608
             M E  Y      ++HD+E E
Sbjct: 668 LKMREEGYVSLTKLVLHDVEEE 689



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 118/508 (23%), Positives = 221/508 (43%), Gaps = 40/508 (7%)

Query: 25  SLQSVKKSSIQSDPPLIPKGPSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVM 83
           S  + +  S+ ++     K P IL  N  I ++   G  + A  +F+ MP R  VS+  M
Sbjct: 27  STSTRRSESVTNNNKPRVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAM 86

Query: 84  IAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGL 143
           I+GY   +  N A  +F +M   ++      L+  ++ C+    L +A  +  +      
Sbjct: 87  ISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCR----LGDARRLFDLMP---- 138

Query: 144 EGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFK 203
           E  +   NSL+  YA     +D AR VF++M  KN +SW  L+  Y H+G       +F+
Sbjct: 139 EKDVVSWNSLLSGYAQNGY-VDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFE 197

Query: 204 EMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVM-----NSILDM 258
                    +   + +    C   G+V   KL  A  +       +PV      N+++  
Sbjct: 198 ---------SKSDWDLISWNCLMGGFVRKKKLGDARWLF----DKMPVRDAISWNTMISG 244

Query: 259 YCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTF 317
           Y +   LS A + FDE   +D+ TW  +++GY ++G   E    F +M  +    N  ++
Sbjct: 245 YAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEK----NEVSY 300

Query: 318 TSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD 377
            ++IA       +   +++   +  R    N++  N +I  Y + G+I+ ++K F  M  
Sbjct: 301 NAMIAGYVQTKKMDIARELFESMPCR----NISSWNTMITGYGQIGDIAQARKFFDMMPQ 356

Query: 378 RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY 437
           RD V+W +++ GY   GH +EA+ +F E+ + G   +R  F   L+ C+    ++ G + 
Sbjct: 357 RDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQI 416

Query: 438 FKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
                         +   ++ +  + G + EA +  + +  K D   W  +L     H  
Sbjct: 417 HGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEK-DVVSWNTMLAGYARHGF 475

Query: 498 PN--LGKLAALRVLDLKPNMMGTYIILS 523
               L    +++   +KP+ +    +LS
Sbjct: 476 GRQALTVFESMKTAGVKPDEITMVGVLS 503



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/300 (21%), Positives = 136/300 (45%), Gaps = 31/300 (10%)

Query: 274 EMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSC 332
            + + D++ WN  I+ + ++G  +  L++F+ M       +  ++ ++I+     +  + 
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRR----SSVSYNAMISGYLRNSKFNL 98

Query: 333 GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA 392
            + +   +  R    +L   N ++  Y +   + D++++F  M ++D+V+W S++ GY  
Sbjct: 99  ARNLFDQMPER----DLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQ 154

Query: 393 HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEI 452
           +G+  EA E+FD M +     + I +  +L A  H G ++E    F+S +D+++      
Sbjct: 155 NGYVDEAREVFDNMPEK----NSISWNGLLAAYVHNGRIEEACLLFESKSDWDLIS---- 206

Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLK 512
           + C++    R  ++ +A  L   MP + D   W  ++    +      G   A R+ D  
Sbjct: 207 WNCLMGGFVRKKKLGDARWLFDKMPVR-DAISWNTMISGYAQ----GGGLSQARRLFDES 261

Query: 513 PNM-MGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKM 571
           P   + T+  + + Y   G  +E   F      M  K EV  + +     + G++   KM
Sbjct: 262 PTRDVFTWTAMVSGYVQNGMLDEAKTF---FDEMPEKNEVSYNAM-----IAGYVQTKKM 313


>gi|242076494|ref|XP_002448183.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
 gi|241939366|gb|EES12511.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
          Length = 549

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 185/521 (35%), Positives = 295/521 (56%), Gaps = 24/521 (4%)

Query: 73  PERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNA---FTLSSVLKACKGMKSLS 129
           P    +SW   I    +      A ++F+ M R    P +    +L + LK+C  +   +
Sbjct: 10  PWPPPLSWAHQIRMAAAQGHFRDAISLFLRM-RACAAPRSSVPASLPAALKSCAALGLSA 68

Query: 130 NAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS------------------MDNARLVF 171
             A +H +AI+ G     +  N+L+++Y     S                  +++ R VF
Sbjct: 69  LGASLHALAIRSGAFADRFTANALLNLYCKLPCSYLHSTGVTSVGGTGSSTALESVRKVF 128

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           ++M  ++ VSW TL+ G A  G  +  L + ++M  EG   + ++ S  +   A    V 
Sbjct: 129 DEMIERDVVSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTLSSVLPIFAECADVK 188

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            G  +H   +++GF +++ V +S++DMY        + + FD +  +D I WN+++AG  
Sbjct: 189 RGSEVHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDPILWNSVLAGCA 248

Query: 292 KSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
           ++GS  E L +F +M      P   TF+S+I  C  LA+L  G+Q+HA ++R G + N+ 
Sbjct: 249 QNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVIRGGFEDNVF 308

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           ++++LIDMY KCG IS +  IF  M   D+V+WT+M++GY  HG  +EA+ LF+ M    
Sbjct: 309 ISSSLIDMYCKCGEISIAHHIFDRMCSPDVVSWTAMIMGYALHGPAREALVLFERMELGN 368

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEA 469
            +P+ I F+AVLTACSHAGLVD+G KYFKSM+D Y + P  E    + D+LGRAG + EA
Sbjct: 369 AKPNHITFLAVLTACSHAGLVDKGWKYFKSMSDHYGIVPTLEHCAALADILGRAGELDEA 428

Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529
           Y  I  M  KP  SVW  LL AC+ H+   L +  A ++++L+P  +G++++LSN+Y+A 
Sbjct: 429 YNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSAS 488

Query: 530 GKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDK 570
           G+W E A  RK MR  G KK+   SWIEV++K+  F+A+D+
Sbjct: 489 GRWNEAAHLRKSMRKKGMKKDPACSWIEVKNKLHVFVAHDR 529



 Score =  191 bits (485), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 118/396 (29%), Positives = 203/396 (51%), Gaps = 29/396 (7%)

Query: 62  IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121
           +E  R +FDEM ERDVVSW  ++ G      H++A  +  +M R    P++FTLSSVL  
Sbjct: 121 LESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTLSSVLPI 180

Query: 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS 181
                 +   + VHG A++ G +  ++V +SL+D+YA  C   D +  VF+++  ++ + 
Sbjct: 181 FAECADVKRGSEVHGFAVRNGFDNDVFVGSSLIDMYAN-CTRTDYSVKVFDNLPVRDPIL 239

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           W +++ G A +G+    LG+F+ ML  GV   P +FS  +  C +   + FGK +HA VI
Sbjct: 240 WNSVLAGCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVI 299

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLN 300
           + GF  N+ + +S++DMYC+   +S A+  FD M   D+++W  +I GY   G + E L 
Sbjct: 300 RGGFEDNVFISSSLIDMYCKCGEISIAHHIFDRMCSPDVVSWTAMIMGYALHGPAREALV 359

Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR------------GLDGN 348
           +F +M+     PN  TF +++ AC+           HAG+V +            G+   
Sbjct: 360 LFERMELGNAKPNHITFLAVLTACS-----------HAGLVDKGWKYFKSMSDHYGIVPT 408

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVT-WTSMMIGYGAHGHGKEAIELFDEMV 407
           L    AL D+  + G + ++    S+M  +   + W++++     H +   A E+  +++
Sbjct: 409 LEHCAALADILGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIM 468

Query: 408 KSGVRPDRIVFMAVLTAC-SHAGLVDEGLKYFKSMN 442
           +  + P  I    VL+   S +G  +E     KSM 
Sbjct: 469 E--LEPRSIGSHVVLSNMYSASGRWNEAAHLRKSMR 502



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 115/243 (47%), Gaps = 3/243 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + ++LI  Y +    + +  +FD +P RD + W  ++AG        +A  +F  M++ 
Sbjct: 207 FVGSSLIDMYANCTRTDYSVKVFDNLPVRDPILWNSVLAGCAQNGSVEEALGIFRRMLQT 266

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V P   T SS++  C  + SL     +H   I+ G E ++++ +SL+D+Y  C   +  
Sbjct: 267 GVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVIRGGFEDNVFISSSLIDMYCKCG-EISI 325

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  +F+ M   + VSWT +I GYA  G     L +F+ M L   + N  +F   + AC+ 
Sbjct: 326 AHHIFDRMCSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSH 385

Query: 227 TGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT-WN 284
            G V  G K   +    +G    L    ++ D+  R   L +A  +  +M  K   + W+
Sbjct: 386 AGLVDKGWKYFKSMSDHYGIVPTLEHCAALADILGRAGELDEAYNFISKMQIKPTASVWS 445

Query: 285 TII 287
           T++
Sbjct: 446 TLL 448


>gi|222636858|gb|EEE66990.1| hypothetical protein OsJ_23896 [Oryza sativa Japonica Group]
          Length = 659

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 179/523 (34%), Positives = 293/523 (56%), Gaps = 17/523 (3%)

Query: 100 FVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
           + EM +N V P+ FT  SVL+AC   + L     VH  A   G++G+++ +N+LM +YA 
Sbjct: 138 YQEMGKNGVLPDVFTYPSVLRACAEARELVLGRAVHMHAAGAGMDGNLFFQNALMSMYAK 197

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGN--------------GYGGLGVFKEM 205
           C   + +AR VF+ M  ++ VSW ++I+ YA  G               G   +G+ +EM
Sbjct: 198 CG-DLASARKVFDGMVQRDVVSWNSMISSYAAVGQWAEAMELFRRMRDEGTEPVGLIREM 256

Query: 206 LLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCL 265
           +  G E++  +  I + AC+  GW+  GK IH   ++        V N+++ MY R   +
Sbjct: 257 VRGGAEVDYVTLVIGLNACSRVGWLRLGKEIHGLAVRMCCDQVESVSNALITMYARCKDM 316

Query: 266 SDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAAC 324
             A   F  +    ++TWNT+++ +  S  + E  ++F +M      PN  T  + +A C
Sbjct: 317 ECARMLFRMLECPGVVTWNTMLSSFALSDCAEEASSIFREMICRGVKPNYVTVVTYLALC 376

Query: 325 ATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWT 384
           A +A L  GQ++H  IV+ G  G   L N+LIDMY+K G +S +Q +F  M D D++++T
Sbjct: 377 ARVANLQHGQELHGHIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTMDDCDMISYT 436

Query: 385 SMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-D 443
           SM+ GYG  G G  A+ LF++M+ SG++PD I+ + VL+ACSH+GLV EG + F  M   
Sbjct: 437 SMIAGYGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSACSHSGLVLEGEELFNKMVIS 496

Query: 444 YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKL 503
           Y + P  E Y C++DL  RAG +++A E++   PF P  ++W  L+GAC +     +G+ 
Sbjct: 497 YGIKPQMEHYSCMIDLYARAGLLEKAEEMLDHTPFPPTSTMWAALVGACHDRGNIEIGER 556

Query: 504 AALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVC 563
           AA ++L+++    G Y++++N+YAA G W+E A  RK+MR +G  K  G++W ++ +   
Sbjct: 557 AARKLLEMRTENAGHYVLIANMYAAAGCWDELATVRKLMRDLGVTKAPGLAWTDLGNGFT 616

Query: 564 GFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
            F+  D+       +Y VL+ L   M       D+D L  ++E
Sbjct: 617 PFLVGDRSNPLAPEIYVVLDELSEQMRNINNCSDLDILAENIE 659



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 172/352 (48%), Gaps = 21/352 (5%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF----------- 100
           L+  Y   G +  AR +FD M +RDVVSW  MI+ Y +     +A  +F           
Sbjct: 191 LMSMYAKCGDLASARKVFDGMVQRDVVSWNSMISSYAAVGQWAEAMELFRRMRDEGTEPV 250

Query: 101 ---VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVY 157
               EMVR     +  TL   L AC  +  L     +HG+A++   +    V N+L+ +Y
Sbjct: 251 GLIREMVRGGAEVDYVTLVIGLNACSRVGWLRLGKEIHGLAVRMCCDQVESVSNALITMY 310

Query: 158 ATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSF 217
           A  C  M+ AR++F  ++    V+W T+++ +A S        +F+EM+  GV+ N  + 
Sbjct: 311 AR-CKDMECARMLFRMLECPGVVTWNTMLSSFALSDCAEEASSIFREMICRGVKPNYVTV 369

Query: 218 SIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE 277
              +  CA    +  G+ +H  ++KHGF     + NS++DMY +   LS A   FD M +
Sbjct: 370 VTYLALCARVANLQHGQELHGHIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTMDD 429

Query: 278 KDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQV 336
            D+I++ ++IAGY   G  +  L +F +M      P+     ++++AC+    +  G+++
Sbjct: 430 CDMISYTSMIAGYGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSACSHSGLVLEGEEL 489

Query: 337 -HAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMM 387
            +  ++  G+   +   + +ID+YA+ G +  ++    EM D      TS M
Sbjct: 490 FNKMVISYGIKPQMEHYSCMIDLYARAGLLEKAE----EMLDHTPFPPTSTM 537



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 123/252 (48%), Gaps = 3/252 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           ++  LI  Y     +E AR LF  +    VV+W  M++ +   +C  +A ++F EM+   
Sbjct: 302 VSNALITMYARCKDMECARMLFRMLECPGVVTWNTMLSSFALSDCAEEASSIFREMICRG 361

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V PN  T+ + L  C  + +L +   +HG  +K G +G   + NSL+D+Y+     +  A
Sbjct: 362 VKPNYVTVVTYLALCARVANLQHGQELHGHIVKHGFKGYRLLWNSLIDMYSKSG-RLSVA 420

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           + VF+ M   + +S+T++I GY   G G   L +F++M+  G++ +       + AC+ +
Sbjct: 421 QNVFDTMDDCDMISYTSMIAGYGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSACSHS 480

Query: 228 GWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT-WNT 285
           G V  G +L +  VI +G    +   + ++D+Y R   L  A +  D        T W  
Sbjct: 481 GLVLEGEELFNKMVISYGIKPQMEHYSCMIDLYARAGLLEKAEEMLDHTPFPPTSTMWAA 540

Query: 286 IIAGYEKSGSSE 297
           ++      G+ E
Sbjct: 541 LVGACHDRGNIE 552



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 3/154 (1%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           KG  +L  +LI  Y   G +  A+ +FD M + D++S+T MIAGY        A  +F +
Sbjct: 398 KGYRLLWNSLIDMYSKSGRLSVAQNVFDTMDDCDMISYTSMIAGYGMQGKGTVALRLFEQ 457

Query: 103 MVRNEVNPNAFTLSSVLKAC--KGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
           M+ + + P+   + +VL AC   G+  L    L + M I  G++  +   + ++D+YA  
Sbjct: 458 MIDSGIKPDHIIMVTVLSACSHSGL-VLEGEELFNKMVISYGIKPQMEHYSCMIDLYARA 516

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGN 194
            +      ++ +         W  L+      GN
Sbjct: 517 GLLEKAEEMLDHTPFPPTSTMWAALVGACHDRGN 550


>gi|15228257|ref|NP_188283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274288|sp|Q9LUS3.1|PP237_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16610
 gi|11994615|dbj|BAB02752.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332642322|gb|AEE75843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 188/518 (36%), Positives = 294/518 (56%), Gaps = 10/518 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR-N 106
           + T L+  Y   G +E A  +FDEMP+RD+V+W  MI+G++   C      +F++M R +
Sbjct: 140 VCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRID 199

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMD 165
            ++PN  T+  +  A     +L     VHG   + G    + V+  ++DVYA   CI   
Sbjct: 200 GLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIY- 258

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLL-EGVEM-NPYSFSIAVRA 223
            AR VF+    KN+V+W+ +I GY  +        VF +ML+ + V M  P +  + +  
Sbjct: 259 -ARRVFDLDFKKNEVTWSAMIGGYVENEMIKEAGEVFFQMLVNDNVAMVTPVAIGLILMG 317

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           CA  G +S G+ +H   +K GF  +L V N+I+  Y ++  L DA + F E+  KD+I++
Sbjct: 318 CARFGDLSGGRCVHCYAVKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISY 377

Query: 284 NTIIAG-YEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N++I G        E   +F +M++    P+  T   ++ AC+ LAAL  G   H   V 
Sbjct: 378 NSLITGCVVNCRPEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVV 437

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            G   N ++ NAL+DMY KCG +  ++++F  M  RD+V+W +M+ G+G HG GKEA+ L
Sbjct: 438 HGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEALSL 497

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN--DYNVNPNKEIYGCVVDLL 460
           F+ M ++GV PD +  +A+L+ACSH+GLVDEG + F SM+  D+NV P  + Y C+ DLL
Sbjct: 498 FNSMQETGVNPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRIDHYNCMTDLL 557

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520
            RAG + EAY+ +  MPF+PD  V G LL AC  ++   LG   + ++  L      + +
Sbjct: 558 ARAGYLDEAYDFVNKMPFEPDIRVLGTLLSACWTYKNAELGNEVSKKMQSLGET-TESLV 616

Query: 521 ILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEV 558
           +LSN Y+A  +WE+ A+ R I +  G  K  G SW++V
Sbjct: 617 LLSNTYSAAERWEDAARIRMIQKKRGLLKTPGYSWVDV 654



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 129/452 (28%), Positives = 224/452 (49%), Gaps = 12/452 (2%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDV--VSWTVMIAGYTSFNCHNQAWTVFVEM 103
           S +  NL + Y     +E AR +FDE+P   +  ++W +MI  Y S +   +A  ++ +M
Sbjct: 35  STVLVNLTRLYASCNEVELARHVFDEIPHPRINPIAWDLMIRAYASNDFAEKALDLYYKM 94

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           + + V P  +T   VLKAC G++++ +  L+H           +YV  +L+D YA C   
Sbjct: 95  LNSGVRPTKYTYPFVLKACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCG-E 153

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEM-LLEGVEMNPYSFSIAVR 222
           ++ A  VF++M  ++ V+W  +I+G++        +G+F +M  ++G+  N  +      
Sbjct: 154 LEMAIKVFDEMPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFP 213

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           A    G +  GK +H    + GF ++L V   ILD+Y +  C+  A + FD   +K+ +T
Sbjct: 214 ALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDLDFKKNEVT 273

Query: 283 WNTIIAGY-EKSGSSECLNMFSKM----KSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
           W+ +I GY E     E   +F +M         +P       I+  CA    LS G+ VH
Sbjct: 274 WSAMIGGYVENEMIKEAGEVFFQMLVNDNVAMVTPVAIGL--ILMGCARFGDLSGGRCVH 331

Query: 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
              V+ G   +L + N +I  YAK G++ D+ + FSE+  +D++++ S++ G   +   +
Sbjct: 332 CYAVKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNCRPE 391

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVV 457
           E+  LF EM  SG+RPD    + VLTACSH   +  G         +    N  I   ++
Sbjct: 392 ESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSICNALM 451

Query: 458 DLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           D+  + G++  A  +  +M  K D   W  +L
Sbjct: 452 DMYTKCGKLDVAKRVFDTM-HKRDIVSWNTML 482



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 108/424 (25%), Positives = 194/424 (45%), Gaps = 52/424 (12%)

Query: 117 SVLKACKGMKSLSNAALVHGMAIKEGLE-GSIYVENSLMDVYATCCISMDNARLVFNDMK 175
           S+L+ C   ++L    ++H   +K  L   S  V  +L  +YA+C   ++ AR VF+++ 
Sbjct: 4   SLLETCIRSRNLVLGQVIHQHLLKRSLTLSSSTVLVNLTRLYASCN-EVELARHVFDEIP 62

Query: 176 WK--NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG 233
               N ++W  +I  YA +      L ++ +ML  GV    Y++   ++ACA    +  G
Sbjct: 63  HPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAIDDG 122

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE-K 292
           KLIH+ V    F +++ V  +++D Y +   L  A + FDEM ++D++ WN +I+G+   
Sbjct: 123 KLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGFSLH 182

Query: 293 SGSSECLNMFSKMKS-ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLAL 351
              ++ + +F  M+  +  SPN  T   +  A     AL  G+ VH    R G   +L +
Sbjct: 183 CCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVV 242

Query: 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM----- 406
              ++D+YAK   I  ++++F     ++ VTW++M+ GY  +   KEA E+F +M     
Sbjct: 243 KTGILDVYAKSKCIIYARRVFDLDFKKNEVTWSAMIGGYVENEMIKEAGEVFFQMLVNDN 302

Query: 407 --------------------------------VKSGVRPDRIVFMAVLTACSHAGLVDEG 434
                                           VK+G   D  V   +++  +  G + + 
Sbjct: 303 VAMVTPVAIGLILMGCARFGDLSGGRCVHCYAVKAGFILDLTVQNTIISFYAKYGSLCDA 362

Query: 435 LKYFKSMNDYNV-NPNKEIYGCVVDLLGRAGRVKEAYELIKSMP---FKPDESVWGPLLG 490
            + F  +   +V + N  I GCVV+      R +E++ L   M     +PD +    +L 
Sbjct: 363 FRQFSEIGLKDVISYNSLITGCVVNC-----RPEESFRLFHEMRTSGIRPDITTLLGVLT 417

Query: 491 ACKE 494
           AC  
Sbjct: 418 ACSH 421


>gi|15239085|ref|NP_201360.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180382|sp|Q9LSL8.1|PP446_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65570
 gi|8978285|dbj|BAA98176.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010689|gb|AED98072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 191/598 (31%), Positives = 328/598 (54%), Gaps = 10/598 (1%)

Query: 16  HKIPPIIKQSLQSVKKSSIQSDPPLIPKG---PSILATNLIKSYFDEGLIEEARTLFDEM 72
           H    +++Q +     S I++    + K      I  + L+ +    G I+ AR +FD M
Sbjct: 66  HNFSQLLRQCIDERSISGIKTIQAHMLKSGFPAEISGSKLVDASLKCGDIDYARQVFDGM 125

Query: 73  PERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAA 132
            ER +V+W  +IA         +A  ++  M+ N V P+ +TLSSV KA   +     A 
Sbjct: 126 SERHIVTWNSLIAYLIKHRRSKEAVEMYRLMITNNVLPDEYTLSSVFKAFSDLSLEKEAQ 185

Query: 133 LVHGMAIKEGLEGS-IYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAH 191
             HG+A+  GLE S ++V ++L+D+Y     + + A+LV + ++ K+ V  T LI GY+ 
Sbjct: 186 RSHGLAVILGLEVSNVFVGSALVDMYVKFGKTRE-AKLVLDRVEEKDVVLITALIVGYSQ 244

Query: 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251
            G     +  F+ ML+E V+ N Y+++  + +C +   +  GKLIH  ++K GF S L  
Sbjct: 245 KGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALAS 304

Query: 252 MNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERF 310
             S+L MY R   + D+ + F  +   + ++W ++I+G  ++G  E  L  F KM  +  
Sbjct: 305 QTSLLTMYLRCSLVDDSLRVFKCIEYPNQVSWTSLISGLVQNGREEMALIEFRKMMRDSI 364

Query: 311 SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQK 370
            PN FT +S +  C+ LA    G+Q+H  + + G D +    + LID+Y KCG    ++ 
Sbjct: 365 KPNSFTLSSALRGCSNLAMFEEGRQIHGIVTKYGFDRDKYAGSGLIDLYGKCGCSDMARL 424

Query: 371 IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           +F  +S+ D+++  +M+  Y  +G G+EA++LF+ M+  G++P+ +  ++VL AC+++ L
Sbjct: 425 VFDTLSEVDVISLNTMIYSYAQNGFGREALDLFERMINLGLQPNDVTVLSVLLACNNSRL 484

Query: 431 VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490
           V+EG + F S     +    + Y C+VDLLGRAGR++EA E++ +    PD  +W  LL 
Sbjct: 485 VEEGCELFDSFRKDKIMLTNDHYACMVDLLGRAGRLEEA-EMLTTEVINPDLVLWRTLLS 543

Query: 491 ACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKE 550
           ACK HR   + +    ++L+++P   GT I++SN+YA+ GKW    + +  M+ M  KK 
Sbjct: 544 ACKVHRKVEMAERITRKILEIEPGDEGTLILMSNLYASTGKWNRVIEMKSKMKDMKLKKN 603

Query: 551 VGMSWIEVRDKVCGFIANDKMGSH--TQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
             MSW+E+  +   F+A D + SH  ++ +   LE LI+   +  Y  D  C+  D+E
Sbjct: 604 PAMSWVEINKETHTFMAGD-LFSHPNSEQILENLEELIKKSKDLGYVEDKSCVFQDME 660


>gi|77554180|gb|ABA96976.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 780

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 189/525 (36%), Positives = 294/525 (56%), Gaps = 5/525 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           LA  L+  Y   G +E +  +FD M E++ VSW   I  + +   +     +F +M  + 
Sbjct: 257 LANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHN 316

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V P + TLSS+L A   + S      VHG +IK  ++  I+V NSL+D+YA    S++ A
Sbjct: 317 VMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFG-SLEKA 375

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             +F  MK +N VSW  +I     +G       +  +M   G   N  +    + ACA  
Sbjct: 376 STIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARM 435

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  GK IHA  I+ G   +L + N+++DMY +   LS A   F E +EKD +++NT+I
Sbjct: 436 ASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIF-ERSEKDDVSYNTLI 494

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            GY +S    E L +F +M+S     +  +F   ++AC  L+    G+++H  +VRR L 
Sbjct: 495 LGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLS 554

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
           G+  L+N+L+D+Y K G +  + KIF++++ +D+ +W +M++GYG HG    A ELF+ M
Sbjct: 555 GHPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYGMHGQIDIAFELFELM 614

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
              G+  D + ++AVL ACSH GLVD+G KYF  M   N+ P +  Y C+VDLLGRAG++
Sbjct: 615 KGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQNIEPQQMHYACMVDLLGRAGQL 674

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            +  E+I+ MPF  +  VWG LLGAC+ H    L + AA  + +LKP   G Y ++ N+Y
Sbjct: 675 SKCAEIIRDMPFPANSDVWGALLGACRIHGNIELAQWAAEHLFELKPEHSGYYTLMINMY 734

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRD--KVCGFIAND 569
           A  G+W E  K RK+M+    +K    SW++ +D  K+  F+  D
Sbjct: 735 AETGRWNEANKIRKLMKSRKVQKNPAYSWVQDQDGNKLQAFLVGD 779



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 119/436 (27%), Positives = 214/436 (49%), Gaps = 14/436 (3%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPER--DVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           LA  L+ SY     +  AR +    P R      W  +    +S +  ++A  V+  M+R
Sbjct: 51  LAGALLLSYAALSDLASARLVLRHHPLRLRSAFLWNSLSRALSSASLPSEALRVYNLMLR 110

Query: 106 NEVNPN--AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           + V P+   F  +    A     +      +H  A++ G    ++  N+L+  YA C  +
Sbjct: 111 SAVRPDDRTFPFALHAAAAAVASAEDKGLELHASALRRGHLADVFTGNTLVAFYAACGKA 170

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
            D AR VF++M  ++ VSW +L++ +  +G  +        M+  G  +N  S    V A
Sbjct: 171 CD-ARRVFDEMPERDVVSWNSLVSAFLVNGMFHDARRALVSMMRSGFPLNVASLVSVVPA 229

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C +     FG  IHA  +K G  + + + N+++DMY +F  +  + Q FD M E++ ++W
Sbjct: 230 CGTEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSW 289

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N+ I  +  +G   + L MF KM      P   T +S++ A   L +   G++VH   ++
Sbjct: 290 NSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIK 349

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
           R +D ++ +AN+L+DMYAK G++  +  IF +M DR++V+W +M+     +G   EA  L
Sbjct: 350 RAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRL 409

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP----NKEIYGCVVD 458
             +M KSG  P+ I  + VL AC+        LK  K ++ +++      +  I   ++D
Sbjct: 410 VTDMQKSGECPNSITLVNVLPACARMA----SLKMGKQIHAWSIRRGLMFDLFISNALID 465

Query: 459 LLGRAGRVKEAYELIK 474
           +  + G++  A  + +
Sbjct: 466 MYSKCGQLSLARNIFE 481



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 117/260 (45%), Gaps = 7/260 (2%)

Query: 237 HAAVIKHG-FGSNLPVMNSILDMYCRFDCLSDANQYFDE--MTEKDLITWNTIIAGYEKS 293
           HAA +  G   ++LP+  ++L  Y     L+ A        +  +    WN++      +
Sbjct: 36  HAASLVSGALATSLPLAGALLLSYAALSDLASARLVLRHHPLRLRSAFLWNSLSRALSSA 95

Query: 294 GS-SECLNMFSKMKSERFSPN--CFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
              SE L +++ M      P+   F F    AA A  +A   G ++HA  +RRG   ++ 
Sbjct: 96  SLPSEALRVYNLMLRSAVRPDDRTFPFALHAAAAAVASAEDKGLELHASALRRGHLADVF 155

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
             N L+  YA CG   D++++F EM +RD+V+W S++  +  +G   +A      M++SG
Sbjct: 156 TGNTLVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAFLVNGMFHDARRALVSMMRSG 215

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470
              +    ++V+ AC        GL          +N    +   +VD+ G+ G V+ + 
Sbjct: 216 FPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASM 275

Query: 471 ELIKSMPFKPDESVWGPLLG 490
           ++   M  + +E  W   +G
Sbjct: 276 QVFDGM-LEQNEVSWNSAIG 294



 Score = 40.8 bits (94), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 42/79 (53%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   L+ +L+  Y   G++  A  +F+++ ++DV SW  MI GY      + A+ +F  M
Sbjct: 555 GHPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYGMHGQIDIAFELFELM 614

Query: 104 VRNEVNPNAFTLSSVLKAC 122
             + ++ +  +  +VL AC
Sbjct: 615 KGDGLDYDHVSYIAVLAAC 633


>gi|242055643|ref|XP_002456967.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
 gi|241928942|gb|EES02087.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
          Length = 785

 Score =  341 bits (875), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 181/562 (32%), Positives = 310/562 (55%), Gaps = 21/562 (3%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            L+ +L   Y   G + EAR +FD   E D VSW  +++GY       +   VF  M  +
Sbjct: 139 FLSNSLASMYASCGEMGEARRVFDAAEEHDDVSWNSLLSGYVRAGAREETLKVFSLMCHH 198

Query: 107 EVNPNAFTLSSVLKACKGMKSLSN--AALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
            +  N+F L S++K C     +    A  VHG  +K GL+  +++ ++++D+YA    ++
Sbjct: 199 GLGWNSFALGSIIKCCASGSDVGRHIAEAVHGCVVKAGLDADLFLASAMIDMYAKRG-AL 257

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYG------GLGVFKEMLLEGVEMNPYSFS 218
            NA  +F  +   N + +  +I G+       G       L ++ EM   G++ + ++FS
Sbjct: 258 TNAVALFKSVPDPNVIVFNAMIAGFCRDEAAVGKEVSREALSLYSEMQSRGMQPSEFTFS 317

Query: 219 IAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK 278
             +RAC   G   FGK IH  V+KH F  +  + ++++D+Y    C+ D  + F  + ++
Sbjct: 318 SILRACNLAGEFGFGKQIHGQVLKHSFHDDDYIGSALIDLYSDSGCMEDGYRCFRSLPKQ 377

Query: 279 DLITWNTIIAG------YEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSC 332
           D++TW ++I+G      +EK+     L +F +       P+ FT +S++ ACA+LA    
Sbjct: 378 DIVTWTSMISGCVQNELFEKA-----LRLFQESICYGLKPDLFTMSSVMNACASLAVART 432

Query: 333 GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA 392
           G+Q+    ++ G +   A+ N+ I M A+ G++    + F EM  RD+V+W++++  +  
Sbjct: 433 GEQIQCLAIKYGFNRFTAMGNSFIHMCARSGDVDAVTRRFQEMESRDVVSWSAVISSHAQ 492

Query: 393 HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKE 451
           HG  ++A+ +F+EM+ + V P+ + F+ VLTACSH GLVD+GL+Y++ M N+Y ++P  +
Sbjct: 493 HGCARDALRIFNEMMNAKVAPNEVTFLNVLTACSHGGLVDDGLRYYEIMKNEYGLSPTIK 552

Query: 452 IYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDL 511
              CVVDLLGRAGR+ +A   I+   F  D  VW  LL +C+ H     G+L A +++DL
Sbjct: 553 HVTCVVDLLGRAGRLADAEAFIRDSAFHDDAVVWRSLLASCRIHGDMERGQLVADQIMDL 612

Query: 512 KPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKM 571
           +P    +Y+IL N+Y   G+    +K R +M+  G KKE G+SWIE+R  V  F+A DK 
Sbjct: 613 EPTSSASYVILYNMYLDAGELSLASKTRDLMKERGVKKEPGLSWIELRSGVHSFVAGDKS 672

Query: 572 GSHTQYVYGVLEMLIRHMNETA 593
              +  +Y  L  ++  + + A
Sbjct: 673 HPESNAIYKKLAEMLSKIEKLA 694



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 129/467 (27%), Positives = 230/467 (49%), Gaps = 16/467 (3%)

Query: 42  PKGPSILATNLIKSYFDEGL---IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWT 98
           P     L  +L+ +Y   G+   +  AR L DEMP R+ VS+ ++I+ Y+      +A  
Sbjct: 30  PTASLFLRNSLLAAYCRLGVGAPLHAAR-LIDEMPRRNAVSYNLLISSYSRAGLPGRALE 88

Query: 99  VFVEMVRNE-VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVY 157
            F        +  + FT ++ L AC     L     VH M + +GL   +++ NSL  +Y
Sbjct: 89  TFARARAAAGLRVDRFTYAAALAACSRALDLRTGKAVHAMTVLDGLGNGVFLSNSLASMY 148

Query: 158 ATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSF 217
           A+C   M  AR VF+  +  +DVSW +L++GY  +G     L VF  M   G+  N ++ 
Sbjct: 149 ASCG-EMGEARRVFDAAEEHDDVSWNSLLSGYVRAGAREETLKVFSLMCHHGLGWNSFAL 207

Query: 218 SIAVRACASTGWVS--FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM 275
              ++ CAS   V     + +H  V+K G  ++L + ++++DMY +   L++A   F  +
Sbjct: 208 GSIIKCCASGSDVGRHIAEAVHGCVVKAGLDADLFLASAMIDMYAKRGALTNAVALFKSV 267

Query: 276 TEKDLITWNTIIAGY-------EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLA 328
            + ++I +N +IAG+        K  S E L+++S+M+S    P+ FTF+SI+ AC    
Sbjct: 268 PDPNVIVFNAMIAGFCRDEAAVGKEVSREALSLYSEMQSRGMQPSEFTFSSILRACNLAG 327

Query: 329 ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMI 388
               G+Q+H  +++     +  + +ALID+Y+  G + D  + F  +  +D+VTWTSM+ 
Sbjct: 328 EFGFGKQIHGQVLKHSFHDDDYIGSALIDLYSDSGCMEDGYRCFRSLPKQDIVTWTSMIS 387

Query: 389 GYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP 448
           G   +   ++A+ LF E +  G++PD     +V+ AC+   +   G +       Y  N 
Sbjct: 388 GCVQNELFEKALRLFQESICYGLKPDLFTMSSVMNACASLAVARTGEQIQCLAIKYGFNR 447

Query: 449 NKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
              +    + +  R+G V       + M  + D   W  ++ +  +H
Sbjct: 448 FTAMGNSFIHMCARSGDVDAVTRRFQEMESR-DVVSWSAVISSHAQH 493



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/422 (27%), Positives = 218/422 (51%), Gaps = 28/422 (6%)

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS--MDNARL 169
           AF L  +L++C    +L + A VH    +     S+++ NSL+  Y    +   +  ARL
Sbjct: 3   AFYLD-LLRSCT---ALPHVAAVHAHIARAHPTASLFLRNSLLAAYCRLGVGAPLHAARL 58

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAVRACASTG 228
           + ++M  +N VS+  LI+ Y+ +G     L  F       G+ ++ ++++ A+ AC+   
Sbjct: 59  I-DEMPRRNAVSYNLLISSYSRAGLPGRALETFARARAAAGLRVDRFTYAAALAACSRAL 117

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            +  GK +HA  +  G G+ + + NS+  MY     + +A + FD   E D ++WN++++
Sbjct: 118 DLRTGKAVHAMTVLDGLGNGVFLSNSLASMYASCGEMGEARRVFDAAEEHDDVSWNSLLS 177

Query: 289 GYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALS--CGQQVHAGIVRRGL 345
           GY ++G+  E L +FS M       N F   SII  CA+ + +     + VH  +V+ GL
Sbjct: 178 GYVRAGAREETLKVFSLMCHHGLGWNSFALGSIIKCCASGSDVGRHIAEAVHGCVVKAGL 237

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY----GAHGH--GKEA 399
           D +L LA+A+IDMYAK G ++++  +F  + D +++ + +M+ G+     A G    +EA
Sbjct: 238 DADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVFNAMIAGFCRDEAAVGKEVSREA 297

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL 459
           + L+ EM   G++P    F ++L AC+ AG    G +    +  ++ + +  I   ++DL
Sbjct: 298 LSLYSEMQSRGMQPSEFTFSSILRACNLAGEFGFGKQIHGQVLKHSFHDDDYIGSALIDL 357

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD------LKP 513
              +G +++ Y   +S+P K D   W  ++  C ++ L       ALR+        LKP
Sbjct: 358 YSDSGCMEDGYRCFRSLP-KQDIVTWTSMISGCVQNELFE----KALRLFQESICYGLKP 412

Query: 514 NM 515
           ++
Sbjct: 413 DL 414


>gi|302807997|ref|XP_002985693.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
 gi|300146602|gb|EFJ13271.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
          Length = 706

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 184/563 (32%), Positives = 302/563 (53%), Gaps = 8/563 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           ++ +L+  Y   G +EEAR +F+  P ++V SWT++I          +A  +F EM++  
Sbjct: 71  VSNHLVMMYGKCGSLEEARLVFEATPAKNVFSWTILITVCAQHGRSQEALALFYEMLKQG 130

Query: 108 VNPNAFTLSSVLKACK-GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           + P++ + ++ + AC  G + L     +H +  + G + ++    SL+ +Y+ C  S++ 
Sbjct: 131 IQPHSVSFTAAINACSAGPEFLPAGRALHALLRRYGFQDAVVATTSLVSMYSKCG-SLEE 189

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           +   F  M   N VSW  +I  +A    G   L   ++M LEG+     ++   + A   
Sbjct: 190 SVKTFESMTELNAVSWNAMIAAFAEHRRGLEALRTLQKMFLEGIRACSVTYITLMSAYDQ 249

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +   + IH  +++ GF  +  V+N IL+MY +  CL DA   F  M++ D+I WNT+
Sbjct: 250 PSQLKSARYIHDCILRTGFDQD--VVNVILNMYGKCGCLQDAEAMFKSMSQPDVIAWNTM 307

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           IA Y + G +SE L  +  M+ E   P+ +T+ S+I ACATL  +  G+QVH  +  R  
Sbjct: 308 IAAYSQHGHTSEALRFYELMQEEGVVPDDYTYVSVIDACATLGDMEVGKQVHRRLGDRAF 367

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
                LAN+L++MY KCG +  ++ IF + + +  VTW +M+  Y  H H ++A ELF  
Sbjct: 368 QVT-ELANSLVNMYGKCGILDVARSIFDKTA-KGSVTWNAMIGAYAQHSHEQQAFELFLL 425

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAG 464
           M   G  P  I FM+VL+AC++AGL +E   YF  M  D+ V P    YGC+V+ LG+AG
Sbjct: 426 MRLDGEEPSYITFMSVLSACANAGLPEEAHSYFVCMQQDHGVRPGGGHYGCMVESLGKAG 485

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           R+ +A  LI+ MPF+PD   W   L  C+ H     GK AA   + + P     Y+ L+ 
Sbjct: 486 RLSDAEALIQGMPFEPDVLTWTSFLANCRSHGDMKRGKFAAKGAIRIDPEASTGYVALAR 545

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           I+A  G ++E ++ RK+M   G +K  G S I++   V  F A D+    ++ ++  L+ 
Sbjct: 546 IHADAGDFQEASRIRKLMLDRGIRKNAGRSIIKLGTSVYEFTAGDQSNPRSKEIFDELKR 605

Query: 585 LIRHMNETAYEPDIDCLIHDLEG 607
           L + M    Y+PD+  + HD+E 
Sbjct: 606 LDKEMKRAGYDPDMTHVAHDVEA 628



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 110/380 (28%), Positives = 197/380 (51%), Gaps = 8/380 (2%)

Query: 118 VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK 177
           V+++C  + +L+    +H +  + GL   +YV N L+ +Y  C  S++ ARLVF     K
Sbjct: 40  VIQSCARLGALAEGRRIHQLIRRVGLGSDVYVSNHLVMMYGKCG-SLEEARLVFEATPAK 98

Query: 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC-ASTGWVSFGKLI 236
           N  SWT LIT  A  G     L +F EML +G++ +  SF+ A+ AC A   ++  G+ +
Sbjct: 99  NVFSWTILITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRAL 158

Query: 237 HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGS 295
           HA + ++GF   +    S++ MY +   L ++ + F+ MTE + ++WN +IA + E    
Sbjct: 159 HALLRRYGFQDAVVATTSLVSMYSKCGSLEESVKTFESMTELNAVSWNAMIAAFAEHRRG 218

Query: 296 SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
            E L    KM  E       T+ ++++A    + L   + +H  I+R G D +  + N +
Sbjct: 219 LEALRTLQKMFLEGIRACSVTYITLMSAYDQPSQLKSARYIHDCILRTGFDQD--VVNVI 276

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           ++MY KCG + D++ +F  MS  D++ W +M+  Y  HGH  EA+  ++ M + GV PD 
Sbjct: 277 LNMYGKCGCLQDAEAMFKSMSQPDVIAWNTMIAAYSQHGHTSEALRFYELMQEEGVVPDD 336

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKS 475
             +++V+ AC+  G ++ G +  + + D       E+   +V++ G+ G +  A  +   
Sbjct: 337 YTYVSVIDACATLGDMEVGKQVHRRLGDRAFQVT-ELANSLVNMYGKCGILDVARSIFDK 395

Query: 476 MPFKPDESVWGPLLGACKEH 495
                    W  ++GA  +H
Sbjct: 396 TA--KGSVTWNAMIGAYAQH 413



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 112/461 (24%), Positives = 203/461 (44%), Gaps = 47/461 (10%)

Query: 21  IIKQSLQ------SVKKSSIQSDPPLIPKGPSILA--------------TNLIKSYFDEG 60
           ++KQ +Q      +   ++  + P  +P G ++ A              T+L+  Y   G
Sbjct: 126 MLKQGIQPHSVSFTAAINACSAGPEFLPAGRALHALLRRYGFQDAVVATTSLVSMYSKCG 185

Query: 61  LIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLK 120
            +EE+   F+ M E + VSW  MIA +       +A     +M    +   + T  +++ 
Sbjct: 186 SLEESVKTFESMTELNAVSWNAMIAAFAEHRRGLEALRTLQKMFLEGIRACSVTYITLMS 245

Query: 121 ACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDV 180
           A      L +A  +H   ++ G +  +   N ++++Y  C   + +A  +F  M   + +
Sbjct: 246 AYDQPSQLKSARYIHDCILRTGFDQDVV--NVILNMYGKCGC-LQDAEAMFKSMSQPDVI 302

Query: 181 SWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAV 240
           +W T+I  Y+  G+    L  ++ M  EGV  + Y++   + ACA+ G +  GK +H  +
Sbjct: 303 AWNTMIAAYSQHGHTSEALRFYELMQEEGVVPDDYTYVSVIDACATLGDMEVGKQVHRRL 362

Query: 241 IKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECL 299
               F     + NS+++MY +   L  A   FD+ T K  +TWN +I  Y + S   +  
Sbjct: 363 GDRAFQVT-ELANSLVNMYGKCGILDVARSIFDK-TAKGSVTWNAMIGAYAQHSHEQQAF 420

Query: 300 NMFSKMKSERFSPNCFTFTSIIAACATL-------AALSCGQQVHAGIVRRGLDGNLALA 352
            +F  M+ +   P+  TF S+++ACA         +   C QQ H   VR G  G+    
Sbjct: 421 ELFLLMRLDGEEPSYITFMSVLSACANAGLPEEAHSYFVCMQQDHG--VRPG-GGHY--- 474

Query: 353 NALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411
             +++   K G +SD++ +   M  + D++TWTS +    +HG  K          K  +
Sbjct: 475 GCMVESLGKAGRLSDAEALIQGMPFEPDVLTWTSFLANCRSHGDMKRG----KFAAKGAI 530

Query: 412 RPD---RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN 449
           R D      ++A+    + AG   E  +  K M D  +  N
Sbjct: 531 RIDPEASTGYVALARIHADAGDFQEASRIRKLMLDRGIRKN 571



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 110/215 (51%), Gaps = 15/215 (6%)

Query: 320 IIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD 379
           +I +CA L AL+ G+++H  I R GL  ++ ++N L+ MY KCG++ +++ +F     ++
Sbjct: 40  VIQSCARLGALAEGRRIHQLIRRVGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAKN 99

Query: 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG--LVDEGLKY 437
           + +WT ++     HG  +EA+ LF EM+K G++P  + F A + ACS AG   +  G   
Sbjct: 100 VFSWTILITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAINACS-AGPEFLPAGRAL 158

Query: 438 FKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
              +  Y           +V +  + G ++E+ +  +SM  + +   W  ++ A  EHR 
Sbjct: 159 HALLRRYGFQDAVVATTSLVSMYSKCGSLEESVKTFESMT-ELNAVSWNAMIAAFAEHRR 217

Query: 498 PNLGKLAALRVLDLKPNMMG------TYIILSNIY 526
                L ALR L  K  + G      TYI L + Y
Sbjct: 218 ----GLEALRTLQ-KMFLEGIRACSVTYITLMSAY 247


>gi|195647336|gb|ACG43136.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 788

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 200/630 (31%), Positives = 333/630 (52%), Gaps = 74/630 (11%)

Query: 27  QSVKKSSIQSDPPL---IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVM 83
           + VK   I S   L   +P+   +  T ++ +    G + +A  L++  P   V  +T M
Sbjct: 158 EHVKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFFTAM 217

Query: 84  IAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGL 143
           I+G+     H  A+ VF +M+   V PN  TL  V+KAC G      A  V G+A+K  L
Sbjct: 218 ISGFVRNELHKDAFPVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVKCNL 277

Query: 144 -EGSIYVENSLMDVYATCCISMDNA---RLVFNDMKWKNDVSWTTLITGYAHSGNGYGG- 198
            E SI V NSL+ +Y    + M +A     VF+DM+ ++ VSWT L+  YA  G+ YG  
Sbjct: 278 FEKSIEVHNSLITLY----LRMGDAAAAHRVFDDMEVRDVVSWTALLDVYADLGDLYGAR 333

Query: 199 ------------------------------LGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
                                         L ++ +ML +G   N   FS  + ACA+  
Sbjct: 334 RVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQ 393

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            +  G  IHA  +K G  +NL V +S++DMYC+    + A + F+ + EK+ + WN++I+
Sbjct: 394 DLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLIS 453

Query: 289 GYEKSGS--------------------------------SECLNMFSKMKSERFSPNCFT 316
           GY  +G                                  + LN F  M +    P   T
Sbjct: 454 GYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEIT 513

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
            +S++ ACA L +L  G+ VHA IV+ G++ N+ +  AL DMYAK G++  S+++F +M 
Sbjct: 514 LSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRVFYQMP 573

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
           +++ +TWT+M+ G   +G  +E+I LF++M+++G+ P+   F+A+L ACSH GLV++ + 
Sbjct: 574 EKNNITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCGLVEQAIH 633

Query: 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR 496
           YF++M  + + P  + Y C+VD+L RAG + EA EL+  +  + D S W  LL AC  +R
Sbjct: 634 YFETMQAHGIPPKSKHYTCMVDVLARAGCLPEAEELLMKVSSELDTSSWSSLLSACSTYR 693

Query: 497 LPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWI 556
              +G+ AA ++ +L+ +    Y++LSN+YA+ GKW++ A+ R +M+G   KK+ G SW+
Sbjct: 694 NKEIGERAAKKLHELEKDNTAGYVLLSNMYASCGKWKDAAETRILMQGASLKKDAGCSWL 753

Query: 557 EVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
           ++R +   F +  +    +  +Y +L++L+
Sbjct: 754 QLRGQYHAFFSWKEKHPLSLEIYEILDLLM 783



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 39/192 (20%)

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL------------ 402
           ++  + K G+I+ ++++F  M ++ +V++T+M+      G  ++A+EL            
Sbjct: 155 MVSEHVKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFF 214

Query: 403 -------------------FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND 443
                              F +M+   VRP+ +  + V+ AC  AG  D  +        
Sbjct: 215 TAMISGFVRNELHKDAFPVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVK 274

Query: 444 YNV-NPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGK 502
            N+   + E++  ++ L  R G    A+ +   M  + D   W  LL         +LG 
Sbjct: 275 CNLFEKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVR-DVVSWTALLDV-----YADLGD 328

Query: 503 L-AALRVLDLKP 513
           L  A RVLD  P
Sbjct: 329 LYGARRVLDAMP 340


>gi|125579001|gb|EAZ20147.1| hypothetical protein OsJ_35746 [Oryza sativa Japonica Group]
          Length = 601

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 189/525 (36%), Positives = 294/525 (56%), Gaps = 5/525 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           LA  L+  Y   G +E +  +FD M E++ VSW   I  + +   +     +F +M  + 
Sbjct: 78  LANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHN 137

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V P + TLSS+L A   + S      VHG +IK  ++  I+V NSL+D+YA    S++ A
Sbjct: 138 VMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFG-SLEKA 196

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             +F  MK +N VSW  +I     +G       +  +M   G   N  +    + ACA  
Sbjct: 197 STIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARM 256

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  GK IHA  I+ G   +L + N+++DMY +   LS A   F E +EKD +++NT+I
Sbjct: 257 ASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIF-ERSEKDDVSYNTLI 315

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            GY +S    E L +F +M+S     +  +F   ++AC  L+    G+++H  +VRR L 
Sbjct: 316 LGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLS 375

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
           G+  L+N+L+D+Y K G +  + KIF++++ +D+ +W +M++GYG HG    A ELF+ M
Sbjct: 376 GHPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYGMHGQIDIAFELFELM 435

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
              G+  D + ++AVL ACSH GLVD+G KYF  M   N+ P +  Y C+VDLLGRAG++
Sbjct: 436 KGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQNIEPQQMHYACMVDLLGRAGQL 495

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            +  E+I+ MPF  +  VWG LLGAC+ H    L + AA  + +LKP   G Y ++ N+Y
Sbjct: 496 SKCAEIIRDMPFPANSDVWGALLGACRIHGNIELAQWAAEHLFELKPEHSGYYTLMINMY 555

Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRD--KVCGFIAND 569
           A  G+W E  K RK+M+    +K    SW++ +D  K+  F+  D
Sbjct: 556 AETGRWNEANKIRKLMKSRKVQKNPAYSWVQDQDGNKLQAFLVGD 600



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/419 (28%), Positives = 226/419 (53%), Gaps = 4/419 (0%)

Query: 72  MPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNA 131
           MPERDVVSW  +++ +      + A    V M+R+    N  +L SV+ AC   +     
Sbjct: 1   MPERDVVSWNSLVSAFLVNGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFG 60

Query: 132 ALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAH 191
             +H +A+K GL   + + N+L+D+Y      ++ +  VF+ M  +N+VSW + I  + +
Sbjct: 61  LSIHALAVKVGLNTMVNLANALVDMYGKFG-DVEASMQVFDGMLEQNEVSWNSAIGCFLN 119

Query: 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251
           +G     L +F++M    V     + S  + A    G    G+ +H   IK     ++ V
Sbjct: 120 AGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFV 179

Query: 252 MNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERF 310
            NS++DMY +F  L  A+  F++M ++++++WN +IA   ++G+ +E   + + M+    
Sbjct: 180 ANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGE 239

Query: 311 SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQK 370
            PN  T  +++ ACA +A+L  G+Q+HA  +RRGL  +L ++NALIDMY+KCG +S ++ 
Sbjct: 240 CPNSITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARN 299

Query: 371 IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           IF E S++D V++ ++++GY       E++ LF +M   G+  D + FM  L+AC++  +
Sbjct: 300 IF-ERSEKDDVSYNTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSV 358

Query: 431 VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
              G +    +    ++ +  +   ++DL  + G +  A ++   +  K D + W  ++
Sbjct: 359 FKHGKEIHCVLVRRLLSGHPFLSNSLLDLYTKGGMLVTASKIFNKIT-KKDVASWNTMI 416



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 42/79 (53%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   L+ +L+  Y   G++  A  +F+++ ++DV SW  MI GY      + A+ +F  M
Sbjct: 376 GHPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYGMHGQIDIAFELFELM 435

Query: 104 VRNEVNPNAFTLSSVLKAC 122
             + ++ +  +  +VL AC
Sbjct: 436 KGDGLDYDHVSYIAVLAAC 454


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 193/613 (31%), Positives = 324/613 (52%), Gaps = 34/613 (5%)

Query: 25  SLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMI 84
           SL  +K+   Q     + +  S+L   +I S      ++ A ++F+ +P+ +       +
Sbjct: 35  SLTHLKQVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFNLIPKPETHLCNRFL 94

Query: 85  AGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLE 144
              +      +   V+  M    +  + F+   +LKA   +KSL     +HG+A K G +
Sbjct: 95  RELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFD 154

Query: 145 GSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKE 204
              +V+  L+ +YA C   +  ARL+F+ M  ++ V+W+ +I GY  SG     L +F+E
Sbjct: 155 SDPFVQTGLVRMYAACG-RIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEE 213

Query: 205 MLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGF-----------------GS 247
           M    VE +    S  + AC   G +S+GK+IH  ++++                   GS
Sbjct: 214 MKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGS 273

Query: 248 --------------NLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
                         NL    +++  Y +   + +A   F++M +KDL+ W+ +I+GY +S
Sbjct: 274 MDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAES 333

Query: 294 GS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
            S  E LN+F++M+S    P+  T  S+I ACA L AL   + +H  + + G  G L + 
Sbjct: 334 DSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPIN 393

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
           NALI+MYAKCG++  +++IF +M  +++++WT M+  +  HG    A+  F +M    + 
Sbjct: 394 NALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIE 453

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471
           P+ I F+ VL ACSHAGLV+EG K F SM N++N+ P    YGC+VDL GRA  ++EA E
Sbjct: 454 PNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALE 513

Query: 472 LIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK 531
           L+++MP  P+  +WG L+ AC+ H    LG+ AA R+L+L P+  G ++ LSNIYA   +
Sbjct: 514 LVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGAHVFLSNIYAKARR 573

Query: 532 WEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNE 591
           WE+  + RK+M+  G  KE G S  E+ +++  F+  D+   H   +Y  L  ++  +  
Sbjct: 574 WEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADRSHKHADEIYEKLYEVVSKLKL 633

Query: 592 TAYEPDIDCLIHD 604
             Y P+   ++ D
Sbjct: 634 VGYSPNTCSILVD 646



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 101/398 (25%), Positives = 191/398 (47%), Gaps = 38/398 (9%)

Query: 117 SVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS--MDNARLVFNDM 174
           ++  A     SL++   VH   ++  L+ S  +   L  V ++C +S  +D A  VFN +
Sbjct: 25  TLFSALSSATSLTHLKQVHAQILRSKLDRSTSLLVKL--VISSCALSSSLDYALSVFNLI 82

Query: 175 KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGK 234
                      +   + S      L V++ M  +G+ ++ +SF   ++A +    +  G 
Sbjct: 83  PKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGL 142

Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG 294
            IH    K GF S+  V   ++ MY     +++A   FD+M  +D++TW+ +I GY +SG
Sbjct: 143 EIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSG 202

Query: 295 -SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353
             ++ L +F +MK+    P+    +++++AC     LS G+ +H  I+   +  +  L +
Sbjct: 203 LFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQS 262

Query: 354 ALIDMYAKCGN-------------------------------ISDSQKIFSEMSDRDLVT 382
           AL+ MYA CG+                               I +++ +F++M  +DLV 
Sbjct: 263 ALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVC 322

Query: 383 WTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN 442
           W++M+ GY      +EA+ LF+EM   G++PD++  ++V+TAC+H G +D+  K+     
Sbjct: 323 WSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQA-KWIHLFV 381

Query: 443 DYN-VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
           D N       I   ++++  + G ++ A  +   MP K
Sbjct: 382 DKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRK 419


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 187/509 (36%), Positives = 289/509 (56%), Gaps = 17/509 (3%)

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEG--------LEGSIYVENSLMDVYATCCI 162
           +  +L+ ++K C    +  +  L+H      G          G I+V NSL+ +YA   +
Sbjct: 71  DPVSLTRLVKLCVRHGTAGDGRLIHRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKFGL 130

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHS-GNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
            +D+A  +F+ M  +N V+WTT++   A++ G     L     M  +GV  N Y+FS  +
Sbjct: 131 -LDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYTFSSVL 189

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
            AC + G ++    +HA+ +K G  S++ V +S++D Y +   L    + FDEM  +DL+
Sbjct: 190 GACGTPGVLA---ALHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDLV 246

Query: 282 TWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
            WN+IIAG+ +SG     + +F +MK   FS N  T TS++ AC  +  L  G+QVHA +
Sbjct: 247 VWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGRQVHAHV 306

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           ++   + +L L NAL+DMY KCG++ D++ +F  M  RD+++W++M+ G   +G   EA+
Sbjct: 307 LK--YERDLILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMISGLAQNGKSAEAL 364

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDL 459
            +FD M   GV P+RI  + VL ACSHAGLV++G  YF+SM   + + P +E + C+VDL
Sbjct: 365 RVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLFGIQPEREHHNCMVDL 424

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
           LGRAG++ EA E I+ M  +PD  +W  LLGAC+ H+  NL   AA  +L L+P+  G  
Sbjct: 425 LGRAGKLDEAVEFIRDMNLEPDAVIWRTLLGACRMHKSGNLAAYAAREILKLEPDDQGAR 484

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVY 579
           ++LSN YA   +W +  K  K MR  G KKE G SWIE+   V  FIA D     +  + 
Sbjct: 485 VLLSNTYADLRQWTDAEKSWKAMRDRGMKKEPGRSWIELEKHVHVFIAGDLSHPCSDTIV 544

Query: 580 GVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
             L  LI  ++   Y P  + ++ DL  E
Sbjct: 545 QELNRLIGRISALGYVPQTEFVLQDLAIE 573



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 121/386 (31%), Positives = 202/386 (52%), Gaps = 34/386 (8%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHN-QAWTVFVE 102
           G   ++ +L+  Y   GL+++A  LFD MPER+VV+WT ++A   + +    +A    V 
Sbjct: 113 GGIFVSNSLVSMYAKFGLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVA 172

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M R+ V PNA+T SSVL AC     L   A +H   +K GL+  ++V +SL+D Y     
Sbjct: 173 MWRDGVAPNAYTFSSVLGACGTPGVL---AALHASTVKVGLDSDVFVRSSLIDAYMKLG- 228

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            +D  R VF++M  ++ V W ++I G+A SG+G G + +F  M   G   N  + +  +R
Sbjct: 229 DLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLR 288

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           AC     +  G+ +HA V+K  +  +L + N++LDMYC+   L DA   F  M ++D+I+
Sbjct: 289 ACTGMVMLEAGRQVHAHVLK--YERDLILHNALLDMYCKCGSLEDAEALFHRMPQRDVIS 346

Query: 283 WNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           W+T+I+G  ++G S+E L +F  MKSE  +PN  T   ++ AC+           HAG+V
Sbjct: 347 WSTMISGLAQNGKSAEALRVFDLMKSEGVAPNRITMVGVLFACS-----------HAGLV 395

Query: 342 RR------------GLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMI 388
                         G+       N ++D+  + G + ++ +   +M+ + D V W +++ 
Sbjct: 396 EDGWYYFRSMKKLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIRDMNLEPDAVIWRTLLG 455

Query: 389 GYGAHGHGKEAIELFDEMVKSGVRPD 414
               H  G  A     E++K  + PD
Sbjct: 456 ACRMHKSGNLAAYAAREILK--LEPD 479


>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
           from Arabidopsis thaliana BAC F28A21 gi|T04867 and
           contains multiple PPR PF|01535 repeats. EST gb|AI999742
           comes from this gene. This gene may be cut off, partial
           [Arabidopsis thaliana]
          Length = 757

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 202/657 (30%), Positives = 336/657 (51%), Gaps = 81/657 (12%)

Query: 24  QSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVM 83
           Q+   + KS  Q+D          ++  LI SY +     +A  +   +P+  + S++ +
Sbjct: 36  QAHARILKSGAQND--------GYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSL 87

Query: 84  IAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGL 143
           I   T      Q+  VF  M  + + P++  L ++ K C  + +      +H ++   GL
Sbjct: 88  IYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGL 147

Query: 144 EGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFK 203
           +   +V+ S+  +Y  C   M +AR VF+ M  K+ V+ + L+  YA  G     + +  
Sbjct: 148 DMDAFVQGSMFHMYMRCG-RMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILS 206

Query: 204 EMLLEGVEMNPYSFSIAVRACASTGW---------------------------------- 229
           EM   G+E N  S++  +     +G+                                  
Sbjct: 207 EMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSE 266

Query: 230 -VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR----FDCLSDANQY------------- 271
            ++ G+LIH  VIK G   +  V+++++DMY +    +  +S  NQ+             
Sbjct: 267 MLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYIT 326

Query: 272 -----------------FDEMT-EKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSP 312
                            F E T E ++++W +IIAG  ++G   E L +F +M+     P
Sbjct: 327 GLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKP 386

Query: 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIF 372
           N  T  S++ AC  +AAL  G+  H   VR  L  N+ + +ALIDMYAKCG I+ SQ +F
Sbjct: 387 NHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVF 446

Query: 373 SEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD 432
           + M  ++LV W S+M G+  HG  KE + +F+ ++++ ++PD I F ++L+AC   GL D
Sbjct: 447 NMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTD 506

Query: 433 EGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
           EG KYFK M++ Y + P  E Y C+V+LLGRAG+++EAY+LIK MPF+PD  VWG LL +
Sbjct: 507 EGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNS 566

Query: 492 CKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEV 551
           C+     +L ++AA ++  L+P   GTY++LSNIYAA+G W E    R  M  +G KK  
Sbjct: 567 CRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNP 626

Query: 552 GMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           G SWI+V+++V   +A DK       +   ++ + + M ++ + P++D  +HD+E +
Sbjct: 627 GCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQ 683


>gi|297830924|ref|XP_002883344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329184|gb|EFH59603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 824

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 194/568 (34%), Positives = 321/568 (56%), Gaps = 12/568 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV-RN 106
           + ++ I  Y + G +E +R +FD   ER++  W  MI  Y   +C  ++  +F+E +   
Sbjct: 257 VVSSAISMYAELGDLESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIGSK 316

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           E+  +  T      A  G++ +      HG   K   E  I + NSLM +Y+ C   +  
Sbjct: 317 EIVSDEVTFLLAASAVSGLQQVELGRQFHGFVSKNFRELPIVIINSLMVMYSRCGF-VQK 375

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           +  VF+ M+ ++ VSW T+I+ +  +G    GL +  EM  +G +++  + +  + A ++
Sbjct: 376 SFGVFHSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASN 435

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNS-ILDMYCRFDCLSDANQYFDE--MTEKDLITW 283
                 GK  H  +I+ G       MNS ++DMY +   +  + + F+     E+D  TW
Sbjct: 436 LRNKEIGKQTHGFLIRQGI--QFEGMNSYLIDMYAKSGLIRISQKLFEGSGYAERDQATW 493

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N++I+GY ++G + E   +F KM  +   PN  T  SI+ AC+ + ++  G+Q+H   +R
Sbjct: 494 NSMISGYTQNGHTEETFLVFRKMLEQNIRPNAVTVASILPACSQVGSVDLGKQLHGFSIR 553

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
           + LD N+ +A+AL+DMY+K G I  ++ +FS+  +R+ VT+T+M++GYG HG G+ AI L
Sbjct: 554 QYLDQNVFVASALVDMYSKAGAIKYAENMFSQTKERNSVTYTTMILGYGQHGMGERAISL 613

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLG 461
           F  M + G++PD I F+AVL+ACS++GLVDEGLK F+ M + YN+ P+ E Y C+ D+LG
Sbjct: 614 FLSMQELGIKPDAIAFVAVLSACSYSGLVDEGLKIFEDMREVYNIQPSSEHYCCITDMLG 673

Query: 462 RAGRVKEAYELIKSMPFKPD-ESVWGPLLGACKEHRLPNLGKLAALRV--LDLKPNMMGT 518
           R GRV EAYE +K +  + +   +WG LLG+C+ H    L +  + R+  LD   N  G 
Sbjct: 674 RVGRVNEAYEFVKGLGEEGNIAELWGSLLGSCRLHGELELAETVSERLAKLDKGKNFSGY 733

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
            ++LSN+YA E  W+   + RK MR  G KKEVG S IEV   V  F++ D+   H+  +
Sbjct: 734 EVLLSNMYAEEQNWKSVDRVRKGMREKGLKKEVGRSGIEVAGHVNCFVSRDQEHPHSGEI 793

Query: 579 YGVLEMLIRHMNETAYEPDIDCLIHDLE 606
           Y  ++ L ++M   ++   +  +   LE
Sbjct: 794 YDAIDGLAKNMRGDSFLTTLPIVTPSLE 821



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 138/522 (26%), Positives = 248/522 (47%), Gaps = 43/522 (8%)

Query: 30  KKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTS 89
           + SS  S P L P+ PSI +   +     EG  + AR LFD +P+   V W  +I G+  
Sbjct: 25  RHSSTFSPPTLTPQTPSIRSR--LSKICQEGNPQLARQLFDAIPKPTTVLWNTIIIGFIC 82

Query: 90  FNCHNQAWTVFVEMVRNE--VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSI 147
            N  ++A   +  M +       +A+T SS LKAC   K+L     VH   I+     S 
Sbjct: 83  NNLPHEALLFYSRMKKTAPFTKCDAYTYSSTLKACAETKNLKAGKAVHCHLIRCLQNSSR 142

Query: 148 YVENSLMDVYATC---------CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGG 198
            V NSLM++Y +C         C   D  R VF++M+ KN V+W TLI+ Y  +G     
Sbjct: 143 VVHNSLMNMYVSCLNAPGSELDCFEYDVVRKVFDNMRRKNVVAWNTLISWYVKTGRNAEA 202

Query: 199 LGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG--FGSNLPVMNSIL 256
              F  M+   ++ +P SF     A A++  +    + +  ++K G  +  +L V++S +
Sbjct: 203 CRQFAIMMRMEIKPSPVSFVNVFPAVATSRSIKKANVFYGLMLKLGDEYVKDLFVVSSAI 262

Query: 257 DMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMF-SKMKSERFSPNC 314
            MY     L  + + FD   E+++  WNT+I  Y ++    E + +F   + S+    + 
Sbjct: 263 SMYAELGDLESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDE 322

Query: 315 FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSE 374
            TF    +A + L  +  G+Q H  + +   +  + + N+L+ MY++CG +  S  +F  
Sbjct: 323 VTFLLAASAVSGLQQVELGRQFHGFVSKNFRELPIVIINSLMVMYSRCGFVQKSFGVFHS 382

Query: 375 MSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS-------- 426
           M +RD+V+W +M+  +  +G   E + L  EM K G + D I   A+L+A S        
Sbjct: 383 MRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIG 442

Query: 427 ---HAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPF-KPDE 482
              H  L+ +G++ F+ MN Y           ++D+  ++G ++ + +L +   + + D+
Sbjct: 443 KQTHGFLIRQGIQ-FEGMNSY-----------LIDMYAKSGLIRISQKLFEGSGYAERDQ 490

Query: 483 SVWGPLLGACKEHRLPNLGKLAALRVLD--LKPNMMGTYIIL 522
           + W  ++    ++       L   ++L+  ++PN +    IL
Sbjct: 491 ATWNSMISGYTQNGHTEETFLVFRKMLEQNIRPNAVTVASIL 532



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 126/467 (26%), Positives = 240/467 (51%), Gaps = 13/467 (2%)

Query: 66  RTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGM 125
           R +FD M  ++VV+W  +I+ Y     + +A   F  M+R E+ P+  +  +V  A    
Sbjct: 172 RKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFAIMMRMEIKPSPVSFVNVFPAVATS 231

Query: 126 KSLSNAALVHGMAIKEGLE--GSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWT 183
           +S+  A + +G+ +K G E    ++V +S + +YA     ++++R VF+    +N   W 
Sbjct: 232 RSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELG-DLESSRRVFDSCVERNIEVWN 290

Query: 184 TLITGYAHSGNGYGGLGVFKEML-LEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIK 242
           T+I  Y  +      + +F E +  + +  +  +F +A  A +    V  G+  H  V K
Sbjct: 291 TMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTFLLAASAVSGLQQVELGRQFHGFVSK 350

Query: 243 HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNM 301
           +     + ++NS++ MY R   +  +   F  M E+D+++WNT+I+ + ++G   E L +
Sbjct: 351 NFRELPIVIINSLMVMYSRCGFVQKSFGVFHSMRERDVVSWNTMISAFVQNGLDDEGLML 410

Query: 302 FSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK 361
             +M+ + F  +  T T++++A + L     G+Q H  ++R+G+     + + LIDMYAK
Sbjct: 411 VYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHGFLIRQGIQFE-GMNSYLIDMYAK 469

Query: 362 CGNISDSQKIF--SEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFM 419
            G I  SQK+F  S  ++RD  TW SM+ GY  +GH +E   +F +M++  +RP+ +   
Sbjct: 470 SGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEETFLVFRKMLEQNIRPNAVTVA 529

Query: 420 AVLTACSHAGLVDEGLKYFK-SMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPF 478
           ++L ACS  G VD G +    S+  Y ++ N  +   +VD+  +AG +K A  +      
Sbjct: 530 SILPACSQVGSVDLGKQLHGFSIRQY-LDQNVFVASALVDMYSKAGAIKYAENMFSQTKE 588

Query: 479 KPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNMMGTYIILS 523
           +   +    +LG   +H +    +    +++ L +KP+ +    +LS
Sbjct: 589 RNSVTYTTMILGY-GQHGMGERAISLFLSMQELGIKPDAIAFVAVLS 634



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 152/305 (49%), Gaps = 18/305 (5%)

Query: 45  PSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
           P ++  +L+  Y   G ++++  +F  M ERDVVSW  MI+ +      ++   +  EM 
Sbjct: 356 PIVIINSLMVMYSRCGFVQKSFGVFHSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQ 415

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGL--EGSIYVENSLMDVYA-TCC 161
           +     +  T++++L A   +++       HG  I++G+  EG   + + L+D+YA +  
Sbjct: 416 KQGFKIDYITVTALLSAASNLRNKEIGKQTHGFLIRQGIQFEG---MNSYLIDMYAKSGL 472

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
           I +       +    ++  +W ++I+GY  +G+      VF++ML + +  N  + +  +
Sbjct: 473 IRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEETFLVFRKMLEQNIRPNAVTVASIL 532

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
            AC+  G V  GK +H   I+     N+ V ++++DMY +   +  A   F +  E++ +
Sbjct: 533 PACSQVGSVDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAENMFSQTKERNSV 592

Query: 282 TWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           T+ T+I GY + G  E  +++F  M+     P+   F ++++AC+           ++G+
Sbjct: 593 TYTTMILGYGQHGMGERAISLFLSMQELGIKPDAIAFVAVLSACS-----------YSGL 641

Query: 341 VRRGL 345
           V  GL
Sbjct: 642 VDEGL 646


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 202/657 (30%), Positives = 336/657 (51%), Gaps = 81/657 (12%)

Query: 24  QSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVM 83
           Q+   + KS  Q+D          ++  LI SY +     +A  +   +P+  + S++ +
Sbjct: 36  QAHARILKSGAQND--------GYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSL 87

Query: 84  IAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGL 143
           I   T      Q+  VF  M  + + P++  L ++ K C  + +      +H ++   GL
Sbjct: 88  IYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGL 147

Query: 144 EGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFK 203
           +   +V+ S+  +Y  C   M +AR VF+ M  K+ V+ + L+  YA  G     + +  
Sbjct: 148 DMDAFVQGSMFHMYMRCG-RMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILS 206

Query: 204 EMLLEGVEMNPYSFSIAVRACASTGW---------------------------------- 229
           EM   G+E N  S++  +     +G+                                  
Sbjct: 207 EMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSE 266

Query: 230 -VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR----FDCLSDANQY------------- 271
            ++ G+LIH  VIK G   +  V+++++DMY +    +  +S  NQ+             
Sbjct: 267 MLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYIT 326

Query: 272 -----------------FDEMT-EKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSP 312
                            F E T E ++++W +IIAG  ++G   E L +F +M+     P
Sbjct: 327 GLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKP 386

Query: 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIF 372
           N  T  S++ AC  +AAL  G+  H   VR  L  N+ + +ALIDMYAKCG I+ SQ +F
Sbjct: 387 NHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVF 446

Query: 373 SEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD 432
           + M  ++LV W S+M G+  HG  KE + +F+ ++++ ++PD I F ++L+AC   GL D
Sbjct: 447 NMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTD 506

Query: 433 EGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
           EG KYFK M++ Y + P  E Y C+V+LLGRAG+++EAY+LIK MPF+PD  VWG LL +
Sbjct: 507 EGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNS 566

Query: 492 CKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEV 551
           C+     +L ++AA ++  L+P   GTY++LSNIYAA+G W E    R  M  +G KK  
Sbjct: 567 CRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNP 626

Query: 552 GMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           G SWI+V+++V   +A DK       +   ++ + + M ++ + P++D  +HD+E +
Sbjct: 627 GCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQ 683


>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 177/546 (32%), Positives = 315/546 (57%), Gaps = 3/546 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A  L+  Y     +EEA  LF  MP  D+V+W  MI+G       + A  +F +M ++ 
Sbjct: 285 VANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSG 344

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + P++ TL+S+L A   +        +HG  ++      +++ ++L+D+Y  C   +  A
Sbjct: 345 LQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKC-RDVRMA 403

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           + VF+  K  + V  +T+I+GY  +      + +F+ +L  G++ N    +  + ACAS 
Sbjct: 404 QNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASM 463

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  G+ +H  V+K+ +     V ++++DMY +   L  ++  F +M+ KD +TWN++I
Sbjct: 464 AAMRIGQELHGYVLKNAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMI 523

Query: 288 AGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           + + ++G   E L++F +M  E    N  T +SI++ACA L A+  G+++H  I++  + 
Sbjct: 524 SSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIKGPIR 583

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            +L   +ALIDMY KCGN+  + ++F  M +++ V+W S++  YGAHG  KE+++L   M
Sbjct: 584 ADLFAESALIDMYGKCGNLELALRVFEHMPEKNEVSWNSIISAYGAHGLVKESVDLLCCM 643

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGR 465
            + G + D + F+A+++AC+HAG V EGL+ F+ M  +Y++ P  E   C+VDL  RAG+
Sbjct: 644 QEEGFKADHVTFLALISACAHAGQVQEGLRLFRCMTEEYHIEPQVEHLSCMVDLYSRAGK 703

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           + +A + I  MPFKPD  +WG LL AC+ HR   L ++A+  +  L P+  G Y+++SNI
Sbjct: 704 LDKAMQFIADMPFKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNCGYYVLMSNI 763

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
            A  G+W+  +K R++M+    +K  G SW++V +    F+A DK    ++ +Y  L+ L
Sbjct: 764 NAVAGRWDGVSKMRRLMKDKKVQKIPGYSWVDVNNTSHLFVAADKNHPDSEEIYMSLKSL 823

Query: 586 IRHMNE 591
           I  + +
Sbjct: 824 IIELKQ 829



 Score =  215 bits (547), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 129/451 (28%), Positives = 236/451 (52%), Gaps = 3/451 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + + LIK Y D GL++ AR +FD M ERD V W VM+ GY        A  +F  M  + 
Sbjct: 184 VGSALIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRVMRASG 243

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
            +PN  TL+  L  C     L +   +H +A+K GLE  + V N+L+ +YA  C  ++ A
Sbjct: 244 CDPNFATLACFLSVCAAEADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAK-CQCLEEA 302

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             +F  M   + V+W  +I+G   +G     L +F +M   G++ +  + +  + A    
Sbjct: 303 WRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTEL 362

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
                GK IH  ++++    ++ ++++++D+Y +   +  A   FD     D++  +T+I
Sbjct: 363 NGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMI 422

Query: 288 AGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           +GY  +  SE  + MF  + +    PN     S + ACA++AA+  GQ++H  +++   +
Sbjct: 423 SGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAYE 482

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
           G   + +AL+DMY+KCG +  S  +FS+MS +D VTW SM+  +  +G  +EA++LF +M
Sbjct: 483 GRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQM 542

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
           +  GV+ + +   ++L+AC+    +  G +    +    +  +      ++D+ G+ G +
Sbjct: 543 IMEGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIKGPIRADLFAESALIDMYGKCGNL 602

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
           + A  + + MP K +E  W  ++ A   H L
Sbjct: 603 ELALRVFEHMPEK-NEVSWNSIISAYGAHGL 632



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/465 (25%), Positives = 230/465 (49%), Gaps = 16/465 (3%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDV---VSWTVMIAGYTSFNCHNQAWTVF 100
           GP+ L T L+  Y       +A  +F  +P       + W  +I G+T    H  A   +
Sbjct: 74  GPAALQTRLVGMYVLARRFRDAVAVFSSLPRAAAAAALPWNWLIRGFTMAGHHRLAVLFY 133

Query: 101 VEMVRNEVN--PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA 158
           V+M  +  +  P+  TL  V+K+C  + +L    LVH      GL+  +YV ++L+ +YA
Sbjct: 134 VKMWAHPSSPRPDGHTLPYVVKSCAALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYA 193

Query: 159 TCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFS 218
              + +D AR VF+ M  ++ V W  ++ GY  +G+    +G+F+ M   G + N  + +
Sbjct: 194 DAGL-LDGAREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLA 252

Query: 219 IAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK 278
             +  CA+   +  G  +H   +K+G    + V N+++ MY +  CL +A + F  M   
Sbjct: 253 CFLSVCAAEADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRD 312

Query: 279 DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
           DL+TWN +I+G  ++G   + L +F  M+     P+  T  S++ A   L     G+++H
Sbjct: 313 DLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIH 372

Query: 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
             IVR     ++ L +AL+D+Y KC ++  +Q +F      D+V  ++M+ GY  +   +
Sbjct: 373 GYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMISGYVLNRMSE 432

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE----IY 453
            A+++F  ++  G++P+ ++  + L AC+    +  G    + ++ Y +    E    + 
Sbjct: 433 AAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIG----QELHGYVLKNAYEGRCYVE 488

Query: 454 GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLP 498
             ++D+  + GR+  ++ +   M  K DE  W  ++ +  ++  P
Sbjct: 489 SALMDMYSKCGRLDLSHYMFSKMSAK-DEVTWNSMISSFAQNGEP 532



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 176/374 (47%), Gaps = 20/374 (5%)

Query: 89  SFNCHNQAW--TVFVEMVRNEVN--PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGL- 143
           SF    + W    F E   +  N  P A+ L ++L+ C     L     +H  A+  GL 
Sbjct: 9   SFKPPPRKWLSAAFSETASSATNASPCAYRLLALLRGCVAPSHLPLGLRIHARAVTSGLL 68

Query: 144 ----EGSIYVENSLMDVYATCCISMDNARLVFNDMK---WKNDVSWTTLITGYAHSGNGY 196
                G   ++  L+ +Y        +A  VF+ +        + W  LI G+  +G+  
Sbjct: 69  DAAGPGPAALQTRLVGMY-VLARRFRDAVAVFSSLPRAAAAAALPWNWLIRGFTMAGHHR 127

Query: 197 GGLGVFKEMLLEGVEMNP--YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNS 254
             +  + +M        P  ++    V++CA+ G +  G+L+H      G   ++ V ++
Sbjct: 128 LAVLFYVKMWAHPSSPRPDGHTLPYVVKSCAALGALHLGRLVHRTTRALGLDRDMYVGSA 187

Query: 255 ILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPN 313
           ++ MY     L  A + FD M E+D + WN ++ GY K+G  +  + +F  M++    PN
Sbjct: 188 LIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPN 247

Query: 314 CFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFS 373
             T    ++ CA  A L  G Q+H   V+ GL+  +A+AN L+ MYAKC  + ++ ++F 
Sbjct: 248 FATLACFLSVCAAEADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFG 307

Query: 374 EMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDE 433
            M   DLVTW  M+ G   +G   +A+ LF +M KSG++PD +   ++L A +       
Sbjct: 308 LMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTEL----N 363

Query: 434 GLKYFKSMNDYNVN 447
           G K  K ++ Y V 
Sbjct: 364 GFKQGKEIHGYIVR 377



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 130/311 (41%), Gaps = 14/311 (4%)

Query: 200 GVFKEMLLEGVEMNP--YSFSIAVRACASTGWVSFGKLIHAAVIKHGF----GSNLPVMN 253
             F E        +P  Y     +R C +   +  G  IHA  +  G     G     + 
Sbjct: 20  AAFSETASSATNASPCAYRLLALLRGCVAPSHLPLGLRIHARAVTSGLLDAAGPGPAALQ 79

Query: 254 S-ILDMYCRFDCLSDANQYFDEMTEKDL---ITWNTIIAGYEKSGSSECLNMF-SKMKSE 308
           + ++ MY       DA   F  +        + WN +I G+  +G      +F  KM + 
Sbjct: 80  TRLVGMYVLARRFRDAVAVFSSLPRAAAAAALPWNWLIRGFTMAGHHRLAVLFYVKMWAH 139

Query: 309 RFSP--NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNIS 366
             SP  +  T   ++ +CA L AL  G+ VH      GLD ++ + +ALI MYA  G + 
Sbjct: 140 PSSPRPDGHTLPYVVKSCAALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGLLD 199

Query: 367 DSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS 426
            ++++F  M +RD V W  MM GY   G    A+ LF  M  SG  P+       L+ C+
Sbjct: 200 GAREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCA 259

Query: 427 HAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWG 486
               +  G++       Y + P   +   +V +  +   ++EA+ L   MP + D   W 
Sbjct: 260 AEADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMP-RDDLVTWN 318

Query: 487 PLLGACKEHRL 497
            ++  C ++ L
Sbjct: 319 GMISGCVQNGL 329



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 122/247 (49%), Gaps = 3/247 (1%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           +G   + + L+  Y   G ++ +  +F +M  +D V+W  MI+ +       +A  +F +
Sbjct: 482 EGRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQ 541

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M+   V  N  T+SS+L AC G+ ++     +HG+ IK  +   ++ E++L+D+Y  C  
Sbjct: 542 MIMEGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIKGPIRADLFAESALIDMYGKCG- 600

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
           +++ A  VF  M  KN+VSW ++I+ Y   G     + +   M  EG + +  +F   + 
Sbjct: 601 NLELALRVFEHMPEKNEVSWNSIISAYGAHGLVKESVDLLCCMQEEGFKADHVTFLALIS 660

Query: 223 ACASTGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DL 280
           ACA  G V  G +L      ++     +  ++ ++D+Y R   L  A Q+  +M  K D 
Sbjct: 661 ACAHAGQVQEGLRLFRCMTEEYHIEPQVEHLSCMVDLYSRAGKLDKAMQFIADMPFKPDA 720

Query: 281 ITWNTII 287
             W  ++
Sbjct: 721 GIWGALL 727


>gi|356536685|ref|XP_003536866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Glycine max]
          Length = 723

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 189/585 (32%), Positives = 309/585 (52%), Gaps = 38/585 (6%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           IL + L+  Y +  L+ +A+ + +     D + W ++I+ Y       +A  V+  M+  
Sbjct: 117 ILVSRLVNFYTNVNLLVDAQFVTESSNTLDPLHWNLLISAYVRNGFFVEALCVYKNMLNK 176

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           ++ P+ +T  SVLKAC      ++   VH       +E S++V N+L+ +Y      ++ 
Sbjct: 177 KIEPDEYTYPSVLKACGESLDFNSGLEVHRSIEASSMEWSLFVHNALVSMYGRFG-KLEI 235

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMN------------- 213
           AR +F++M  ++ VSW T+I+ YA  G       +F  M  EGVEMN             
Sbjct: 236 ARHLFDNMPRRDSVSWNTIISCYASRGIWKEAFQLFGSMQEEGVEMNVIIWNTIAGGCLH 295

Query: 214 ---------------------PYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVM 252
                                  +  + + AC+  G +  GK IH   ++  F     V 
Sbjct: 296 SGNFRGALQLISQMRTSIHLDAIAMVVGLNACSHIGAIKLGKEIHGHAVRTCFDVFDNVK 355

Query: 253 NSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLN-MFSKMKSERFS 311
           N+++ MY R   L  A   F    EK LITWN +++GY      E +  +F +M  E   
Sbjct: 356 NALITMYSRCRDLGHAFILFHRTEEKGLITWNAMLSGYAHMDRYEEVTFLFREMLQEGME 415

Query: 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVR-RGLDGNLALANALIDMYAKCGNISDSQK 370
           PN  T  S++  CA +A L  G++ H  I++ +  +  L L NAL+DMY++ G + +++K
Sbjct: 416 PNYVTIASVLPLCARIANLQHGKEFHCYIMKHKQFEEYLLLWNALVDMYSRSGRVLEARK 475

Query: 371 IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           +F  ++ RD VT+TSM++GYG  G G+  ++LF+EM K  ++PD +  +AVLTACSH+GL
Sbjct: 476 VFDSLTKRDEVTYTSMILGYGMKGEGETTLKLFEEMCKLEIKPDHVTMVAVLTACSHSGL 535

Query: 431 VDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           V +G   FK M D + + P  E Y C+ DL GRAG + +A E I  MP+KP  ++W  LL
Sbjct: 536 VAQGQVLFKRMIDVHGIVPRLEHYACMADLFGRAGLLNKAKEFITGMPYKPTSAMWATLL 595

Query: 490 GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKK 549
           GAC+ H    +G+ AA ++L++KP+  G Y++++N+YAA G W + A+ R  MR +G +K
Sbjct: 596 GACRIHGNTEMGEWAAGKLLEMKPDHSGYYVLIANMYAAAGSWRKLAEVRTYMRNLGVRK 655

Query: 550 EVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAY 594
             G +W++V  +   F+  D    H   +Y +++ L   M +  Y
Sbjct: 656 APGCAWVDVGSEFSPFLVGDSSNPHASEIYPLMDGLNELMKDAGY 700



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/454 (24%), Positives = 204/454 (44%), Gaps = 53/454 (11%)

Query: 82  VMIAGYTSFNCHNQ---AWTVFVEMVRNEVNPNAF--TLSSVLKACKGMKSLSNAALVHG 136
           V+IA    F  H     A+  F ++  +  + +     + S+L AC   KSLS    +H 
Sbjct: 46  VLIASLKDFVTHGHLTNAFKTFFQIQHHAASSHLLLHPIGSLLLACTHFKSLSQGKQLHA 105

Query: 137 MAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGY 196
             I  GL+ +  + + L++ Y    + +D A+ V       + + W  LI+ Y  +G   
Sbjct: 106 QVISLGLDQNPILVSRLVNFYTNVNLLVD-AQFVTESSNTLDPLHWNLLISAYVRNGFFV 164

Query: 197 GGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSIL 256
             L V+K ML + +E + Y++   ++AC  +   + G  +H ++       +L V N+++
Sbjct: 165 EALCVYKNMLNKKIEPDEYTYPSVLKACGESLDFNSGLEVHRSIEASSMEWSLFVHNALV 224

Query: 257 DMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCF 315
            MY RF  L  A   FD M  +D ++WNTII+ Y   G   E   +F  M+ E    N  
Sbjct: 225 SMYGRFGKLEIARHLFDNMPRRDSVSWNTIISCYASRGIWKEAFQLFGSMQEEGVEMNVI 284

Query: 316 TFTSI----------------------------------IAACATLAALSCGQQVHAGIV 341
            + +I                                  + AC+ + A+  G+++H   V
Sbjct: 285 IWNTIAGGCLHSGNFRGALQLISQMRTSIHLDAIAMVVGLNACSHIGAIKLGKEIHGHAV 344

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           R   D    + NALI MY++C ++  +  +F    ++ L+TW +M+ GY      +E   
Sbjct: 345 RTCFDVFDNVKNALITMYSRCRDLGHAFILFHRTEEKGLITWNAMLSGYAHMDRYEEVTF 404

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY------FKSMNDYNVNPNKEIYGC 455
           LF EM++ G+ P+ +   +VL  C+    +  G ++       K   +Y +     ++  
Sbjct: 405 LFREMLQEGMEPNYVTIASVLPLCARIANLQHGKEFHCYIMKHKQFEEYLL-----LWNA 459

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           +VD+  R+GRV EA ++  S+  K DE  +  ++
Sbjct: 460 LVDMYSRSGRVLEARKVFDSLT-KRDEVTYTSMI 492



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/269 (22%), Positives = 107/269 (39%), Gaps = 47/269 (17%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +L   L+  Y   G + EAR +FD + +RD V++T MI GY           +F EM + 
Sbjct: 455 LLWNALVDMYSRSGRVLEARKVFDSLTKRDEVTYTSMILGYGMKGEGETTLKLFEEMCKL 514

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIK-EGLEGSIYVENSLMDVYATCCISMD 165
           E+ P+  T+ +VL AC     ++   ++    I   G+   +     + D++    + ++
Sbjct: 515 EIKPDHVTMVAVLTACSHSGLVAQGQVLFKRMIDVHGIVPRLEHYACMADLFGRAGL-LN 573

Query: 166 NARLVFNDMKWK-NDVSWTTLITGYA---------------------HSG------NGYG 197
            A+     M +K     W TL+                         HSG      N Y 
Sbjct: 574 KAKEFITGMPYKPTSAMWATLLGACRIHGNTEMGEWAAGKLLEMKPDHSGYYVLIANMYA 633

Query: 198 GLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSN------LPV 251
             G ++++     E+  Y  ++ VR      WV  G      ++  G  SN       P+
Sbjct: 634 AAGSWRKL----AEVRTYMRNLGVRKAPGCAWVDVGSEFSPFLV--GDSSNPHASEIYPL 687

Query: 252 MNSILDM-----YCRFDCLSDANQYFDEM 275
           M+ + ++     Y R + L  + + F+EM
Sbjct: 688 MDGLNELMKDAGYVRSEELVSSEEDFEEM 716


>gi|222629009|gb|EEE61141.1| hypothetical protein OsJ_15084 [Oryza sativa Japonica Group]
          Length = 897

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 183/543 (33%), Positives = 303/543 (55%), Gaps = 14/543 (2%)

Query: 45  PSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
           PS++++ L   Y      E+AR LF E+PE+D+VSWT +I  Y       +A  +F+ M 
Sbjct: 250 PSVVSS-LFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGME 308

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
            + + P+   +S +L        +      H   ++     S+ + N+L+ +YA C   +
Sbjct: 309 ESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKC-KQV 367

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLL---EGVEMNPYSFSIAV 221
           D A  VF  +  ++  SW++++  Y  +G     L +++EM     +  E +  S    +
Sbjct: 368 DIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISII 427

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
            +C+  G +  G+  H   IKH  G N  V N+++ MY R      A + F  +  KD++
Sbjct: 428 SSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVV 487

Query: 282 TWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           TW+ +I+ Y   G S + L ++ +M +E   PN  T  S+I++CA LAAL  G+ +H+ +
Sbjct: 488 TWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHV 547

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
              GL+ +L++  AL+DMY KCG +  ++K+F  M +RD+VTW  M+ GYG HG   +A+
Sbjct: 548 KDVGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQAL 607

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLL 460
           +LF  M +  V+P+ + F+A+L+AC HAGLVD+G + F  M +Y++ PN + Y C+VDLL
Sbjct: 608 KLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDLL 667

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520
           G++G ++EA +++ +MP +PD  +WG LLGACK H    +G   A +     P   G YI
Sbjct: 668 GKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPENDGYYI 727

Query: 521 ILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYG 580
           ++SN Y +  KW E  K R +M+  G +K +G S I+    +CGF+ N      TQ+ + 
Sbjct: 728 LMSNSYGSAEKWNEIEKLRDMMKNHGVEKSIGWSTID----ICGFMKNQL----TQWQHS 779

Query: 581 VLE 583
           + E
Sbjct: 780 LFE 782



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 142/490 (28%), Positives = 260/490 (53%), Gaps = 12/490 (2%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   +A++L+  Y   G + +A  LFDEMPERDVV+WT +I+G        +  +  V M
Sbjct: 143 GSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRM 202

Query: 104 VRNE----VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
           VR+       PN+ T+ S L+AC  +  LS    +HG  +K G+     V +SL  +Y T
Sbjct: 203 VRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMY-T 261

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
            C S ++AR++F ++  K+ VSWT+LI  Y  +G+    + +F  M   G++ +    S 
Sbjct: 262 KCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISC 321

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
            +    +   V  GK  HAA+++  FG ++ + N+++ MY +   +  A   F  + ++D
Sbjct: 322 LLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRD 381

Query: 280 LITWNTIIAGYEKSG-SSECLNMFSKMK---SERFSPNCFTFTSIIAACATLAALSCGQQ 335
             +W++++  Y K+G   +CL ++ +M+    + F  +  +  SII++C+ L  L  GQ 
Sbjct: 382 TDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQS 441

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
            H   ++     N ++ANALI MY +CGN   ++KIF  +  +D+VTW++++  Y   GH
Sbjct: 442 AHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGH 501

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455
            K+A+ L+D+M+  GV+P+    ++V+++C++   ++ G      + D  +  +  I   
Sbjct: 502 SKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTA 561

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH--RLPNLGKLAALRVLDLKP 513
           +VD+  + G++  A ++  SM  + D   W  ++     H   +  L   + +   ++KP
Sbjct: 562 LVDMYMKCGQLGIARKMFDSM-LERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKP 620

Query: 514 NMMGTYIILS 523
           N +    ILS
Sbjct: 621 NSLTFLAILS 630



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 152/321 (47%), Gaps = 10/321 (3%)

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           W +L+     + +    L   + M   G   + ++  +   A A  G +  G  +HA  +
Sbjct: 75  WNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSV 134

Query: 242 KHGF---GSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS--- 295
           + G      ++ V +S++ MY R   + DA + FDEM E+D++ W  +I+G   +G    
Sbjct: 135 RFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGE 194

Query: 296 --SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353
             S  + M          PN  T  S + AC  L  LS G  +H   V+ G+    ++ +
Sbjct: 195 GLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVS 254

Query: 354 ALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP 413
           +L  MY KC +  D++ +F E+ ++DLV+WTS++  Y   GH ++A+ELF  M +SG++P
Sbjct: 255 SLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQP 314

Query: 414 DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELI 473
           D +V   +L    +   V  G  +  ++   N   +  I   ++ +  +  +V  A  + 
Sbjct: 315 DEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVF 374

Query: 474 KSMPFKPDESVWGPLLGA-CK 493
           + M  + D   W  ++ A CK
Sbjct: 375 R-MLHQRDTDSWSSMVVAYCK 394


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 196/587 (33%), Positives = 317/587 (54%), Gaps = 45/587 (7%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM-VRNEVNP 110
           ++  Y   G +  AR LF++MPE+DVVSW  M++G+       +A  +F +M V+NE++ 
Sbjct: 128 MLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISW 187

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           N   LS+ ++  +    + +A  +        ++  I   N LM  Y      +D+AR +
Sbjct: 188 NGL-LSAYVQNGR----IEDARRL----FDSKMDWEIVSWNCLMGGYVRK-KRLDDARSL 237

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW- 229
           F+ M  ++ +SW  +ITGYA +G       +F+E+ +  V    ++++  V      G  
Sbjct: 238 FDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDV----FAWTAMVSGFVQNGML 293

Query: 230 ---------------VSFGKLIHAAVIKHGF-----------GSNLPVMNSILDMYCRFD 263
                          VS+  +I   V                  N    N+++  Y +  
Sbjct: 294 DEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCG 353

Query: 264 CLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIA 322
            +  A   FDEM ++D I+W  +I+GY +SG SE  L++F KMK +    N       ++
Sbjct: 354 NIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALS 413

Query: 323 ACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVT 382
           +CA +AAL  G+Q+H  +V+ G        NAL+ MY KCG+I ++  +F +++++D+V+
Sbjct: 414 SCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVS 473

Query: 383 WTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM- 441
           W +M+ GY  HG GKEA+ LF+ M K  ++PD +  + VL+ACSH G VD+G++YF SM 
Sbjct: 474 WNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLSACSHTGFVDKGMEYFNSMY 532

Query: 442 NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLG 501
            +Y +  N + Y C++DLLGRAGR+ EA  L+KSMPF PD + WG LLGA + H    LG
Sbjct: 533 QNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELG 592

Query: 502 KLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDK 561
           + AA +V +++P+  G Y++LSN+YAA G+W E  + R  MR  G KK  G SW+E+++K
Sbjct: 593 EKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNK 652

Query: 562 VCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
              F   D      + +Y  LE L   + +  +      ++HD+E E
Sbjct: 653 THIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLHDVEEE 699



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 175/363 (48%), Gaps = 47/363 (12%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T ++  +   G+++EA  +F+EMPE++ VSW  MIAGY       +A  +F +M      
Sbjct: 281 TAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQM------ 334

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P+  T S                                  N+++  YA C  ++D A++
Sbjct: 335 PSRNTSSW---------------------------------NTMVTGYAQCG-NIDQAKI 360

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           +F++M  ++ +SW  +I+GYA SG     L +F +M  +G  +N  + + A+ +CA    
Sbjct: 361 LFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAA 420

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           +  GK +H  ++K GF +     N++L MY +   + +A   F+++TEKD+++WNT+IAG
Sbjct: 421 LELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAG 480

Query: 290 YEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-GLDG 347
           Y + G   E L +F  MK     P+  T   +++AC+    +  G +    + +  G+  
Sbjct: 481 YARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITA 539

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGH---GKEAIELF 403
           N      +ID+  + G + ++  +   M    D  TW +++     HG    G++A E  
Sbjct: 540 NAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKV 599

Query: 404 DEM 406
            EM
Sbjct: 600 FEM 602



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 152/370 (41%), Gaps = 68/370 (18%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTL-------------------------------F 69
           +P+   +    +I  Y     IE+AR L                               F
Sbjct: 303 MPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILF 362

Query: 70  DEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLS 129
           DEMP+RD +SW  MI+GY       +A  +F++M R+    N   L+  L +C  + +L 
Sbjct: 363 DEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALE 422

Query: 130 NAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGY 189
               +HG  +K G +      N+L+ +Y  C  S++ A  VF D+  K+ VSW T+I GY
Sbjct: 423 LGKQLHGRLVKAGFQTGYIAGNALLAMYGKCG-SIEEAFDVFEDITEKDIVSWNTMIAGY 481

Query: 190 AHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNL 249
           A  G G   L +F+ M +  ++ +  +    + AC+ TG+V  G                
Sbjct: 482 ARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGFVDKG---------------- 524

Query: 250 PVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSE 308
             M     MY  +   ++A  Y              +I    ++G   E LN+   MKS 
Sbjct: 525 --MEYFNSMYQNYGITANAKHY------------TCMIDLLGRAGRLDEALNL---MKSM 567

Query: 309 RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDS 368
            F P+  T+ +++ A         G++    +     D N  +   L ++YA  G   + 
Sbjct: 568 PFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPD-NSGMYVLLSNLYAASGRWREV 626

Query: 369 QKIFSEMSDR 378
           +++ S+M D+
Sbjct: 627 REMRSKMRDK 636



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 85/413 (20%), Positives = 166/413 (40%), Gaps = 87/413 (21%)

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSG------------------------NGY---G 197
           ++A  VFN M+ ++ V++  +I+GY  +                         +GY   G
Sbjct: 77  ESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNG 136

Query: 198 GLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIH---------------AAVIK 242
            L   + +  +  E +  S++  +   A  G+V   + I                +A ++
Sbjct: 137 NLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQ 196

Query: 243 HG--------FGSNLP----VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
           +G        F S +       N ++  Y R   L DA   FD M  +D I+WN +I GY
Sbjct: 197 NGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGY 256

Query: 291 EKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAAC------------------------- 324
            ++G  SE   +F ++       + F +T++++                           
Sbjct: 257 AQNGLLSEARRLFEELPIR----DVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWN 312

Query: 325 ATLAALSCGQQVHAG--IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVT 382
           A +A     QQ+     +  +    N +  N ++  YA+CGNI  ++ +F EM  RD ++
Sbjct: 313 AMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCIS 372

Query: 383 WTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN 442
           W +M+ GY   G  +EA+ LF +M + G   +R      L++C+    ++ G +    + 
Sbjct: 373 WAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLV 432

Query: 443 DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
                        ++ + G+ G ++EA+++ + +  K D   W  ++     H
Sbjct: 433 KAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEK-DIVSWNTMIAGYARH 484



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 111/216 (51%), Gaps = 18/216 (8%)

Query: 275 MTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG 333
           + + D++ WN  I+ Y + G  E  L++F+ M+      +  T+ ++I+   +     C 
Sbjct: 55  IVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRR----STVTYNAMISGYLSNNKFDCA 110

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
           ++V   +     D +L   N ++  Y K GN+S ++ +F++M ++D+V+W +M+ G+  +
Sbjct: 111 RKVFEKMP----DRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQN 166

Query: 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIY 453
           G  +EA ++FD+M+      + I +  +L+A    G +++  + F S  D+ +      +
Sbjct: 167 GFVEEARKIFDQMLV----KNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVS----W 218

Query: 454 GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
            C++    R  R+ +A  L   MP + D+  W  ++
Sbjct: 219 NCLMGGYVRKKRLDDARSLFDRMPVR-DKISWNIMI 253


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 195/566 (34%), Positives = 309/566 (54%), Gaps = 19/566 (3%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYT-------SFNCHNQAWTVFVEMV 104
           LI  Y   G + EA  LF ++  + VVSW  MI  Y+       +F+   + W     M 
Sbjct: 354 LIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELME 413

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
            NEV     T+ ++L AC     L +   +HG +++   +    + N+ +  YA C  S+
Sbjct: 414 VNEV-----TILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCG-SL 467

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
             A  VF  M  K+  SW  +I G+A +G+    L  + EM   G+  + +S    + AC
Sbjct: 468 VFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLAC 527

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSD--ANQYFDEMTEKDLIT 282
              G + +GK IH  V+++G   N  V  S+L +Y  F C        YF+ M +K+ + 
Sbjct: 528 GRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLY--FHCSKPFYGRTYFERMGDKNSVC 585

Query: 283 WNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           WN +++GY ++   +E L++F +M S+   P+     SI+ AC+ L+AL  G++VH   +
Sbjct: 586 WNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFAL 645

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           +  L  +  +A +L+DMYAK G +  SQ+IF+ ++ +++ +W  M+ G+G HG G +A+E
Sbjct: 646 KNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVE 705

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLL 460
           LF++M +S  +PDR  F+ VL AC HAGLV EGL Y   M   Y + P  E Y CV+D+L
Sbjct: 706 LFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDML 765

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520
           GRAGR+ EA   I  MP +PD  +W  LL +   +    +G+  A ++L L+ N   +YI
Sbjct: 766 GRAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLLALEANKADSYI 825

Query: 521 ILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYG 580
           +LSN+YA  GKW+     R+ M+ +  +K+VG SWIE+R KV  FIA +     +  +  
Sbjct: 826 LLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIAGENSNPSSDEIRK 885

Query: 581 VLEMLIRHMNETAYEPDIDCLIHDLE 606
           +   L + + E  Y PD  C++H+LE
Sbjct: 886 MWNRLEKQIVEIGYTPDCSCVLHELE 911



 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 142/530 (26%), Positives = 250/530 (47%), Gaps = 46/530 (8%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G  +L T LI  Y   G   E+R +FD +  +++  W  +++GY     +++A   F+E+
Sbjct: 141 GDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLEL 200

Query: 104 VR-NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           +   E  P+ FT   ++KAC G   +     VHGMA+K GL   ++V N+++ +Y  C  
Sbjct: 201 ISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGF 260

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP--YSFSIA 220
            +D A  +F+ M  +N +SW +LI G++ +G        F+ +L  G  + P   +    
Sbjct: 261 -LDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTL 319

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           +  C+  G V  G +IH   +K G    L V N+++DMY +  CLS+A   F ++  K +
Sbjct: 320 LPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSV 379

Query: 281 ITWNTIIAGYEKSG-SSECLNMFSK--MKSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
           ++WN++I  Y + G   E  ++  K  M+ E    N  T  +++ AC   + L   + +H
Sbjct: 380 VSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALH 439

Query: 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
              +R        + NA I  YAKCG++  ++ +F  M+ + + +W +++ G+  +G   
Sbjct: 440 GYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPI 499

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG-------LKYFKSMNDY------ 444
           +A++ + EM + G+ PD    +++L AC   GL+  G       L+    MN +      
Sbjct: 500 KALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLL 559

Query: 445 --NVNPNKEIYG-CVVDLLGRAGRV---------------KEAYELIKSM---PFKPDES 483
               + +K  YG    + +G    V                EA  L + M     +PDE 
Sbjct: 560 SLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEI 619

Query: 484 VWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII---LSNIYAAEG 530
               +LGAC +     LGK   +    LK ++M    +   L ++YA  G
Sbjct: 620 AIASILGACSQLSALGLGK--EVHCFALKNSLMEDNFVACSLMDMYAKSG 667



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 150/296 (50%), Gaps = 9/296 (3%)

Query: 137 MAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGY 196
           + +     G   +   L+ +Y+ C   ++ +RLVF+ +  KN   W  L++GY  +    
Sbjct: 133 LCVSSQFSGDFVLNTRLITMYSICGYPLE-SRLVFDRLLNKNLFQWNALVSGYVRNELYD 191

Query: 197 GGLGVFKEMLLEGVEMNP--YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNS 254
             +  F E L+   E  P  ++F   ++AC     +  GK +H   +K G   +L V N+
Sbjct: 192 EAIHTFLE-LISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNA 250

Query: 255 ILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKM--KSERFS 311
           ++ +Y +   L +A + FD+M E++LI+WN++I G+ ++G   E    F  +    +   
Sbjct: 251 MIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLI 310

Query: 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKI 371
           P+  T  +++  C+    +  G  +H   V+ GL   L + NALIDMY+KCG +S++  +
Sbjct: 311 PDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAIL 370

Query: 372 FSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE--MVKSGVRPDRIVFMAVLTAC 425
           F ++ ++ +V+W SM+  Y   G   E  +L  +  M +  +  + +  + +L AC
Sbjct: 371 FRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPAC 426



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 134/276 (48%), Gaps = 6/276 (2%)

Query: 221 VRACASTGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
           ++ C     V  G KL     +   F  +  +   ++ MY       ++   FD +  K+
Sbjct: 114 LQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKN 173

Query: 280 LITWNTIIAGYEKSG-SSECLNMFSKMKS-ERFSPNCFTFTSIIAACATLAALSCGQQVH 337
           L  WN +++GY ++    E ++ F ++ S   F P+ FTF  +I AC     +  G+ VH
Sbjct: 174 LFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVH 233

Query: 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
              V+ GL  +L + NA+I +Y KCG + ++ ++F +M +++L++W S++ G+  +G   
Sbjct: 234 GMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWL 293

Query: 398 EAIELFDEMVKS--GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455
           EA   F  +++S  G+ PD    + +L  CS  G VD G+          +     +   
Sbjct: 294 EAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNA 353

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
           ++D+  + G + EA  L + +  K   S W  ++GA
Sbjct: 354 LIDMYSKCGCLSEAAILFRKIENKSVVS-WNSMIGA 388



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 123/241 (51%), Gaps = 5/241 (2%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S +A +L+  YF        RT F+ M +++ V W  M++GY+     N+A ++F +M+ 
Sbjct: 552 SFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLS 611

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           + + P+   ++S+L AC  + +L     VH  A+K  L    +V  SLMD+YA     + 
Sbjct: 612 DGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGF-LG 670

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +++ +FN +  K   SW  +ITG+   G G   + +F++M     + + ++F   ++AC 
Sbjct: 671 HSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACC 730

Query: 226 STGWVSFGKLIHAAVIK--HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLIT 282
             G VS G L + A ++  +     L     ++DM  R   L++A  + +EM E+ D   
Sbjct: 731 HAGLVSEG-LNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKI 789

Query: 283 W 283
           W
Sbjct: 790 W 790


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 199/575 (34%), Positives = 319/575 (55%), Gaps = 28/575 (4%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P+  +I    L+  Y   G+I EAR +FD+MPER+VVSWT M+ GY      ++A  +F
Sbjct: 73  MPERNTISWNGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLF 132

Query: 101 VEMVRNEVNPNAFTLSSVLKACK--GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA 158
             M    V      L  +++  +    + L +   V  +     + G +  E  L +   
Sbjct: 133 WRMPEKNVVSWTVMLGGLIEDGRVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLSE--- 189

Query: 159 TCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFS 218
                   AR +F++M  +N V+WT++I+GYA +      + V +++     + N  +++
Sbjct: 190 --------AREIFDEMPQRNVVAWTSMISGYAMNNK----VDVARKLFEVMPDKNEVTWT 237

Query: 219 IAVRACASTGWVS-FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE 277
             ++    +G ++   +L  A  +K     N  +M   L+       +  A   FD+M E
Sbjct: 238 AMLKGYTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLN-----GEVGKARWVFDQMKE 292

Query: 278 KDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQV 336
           KD  TW+ +I  YE+ G   E L +FS M+ E   PN  +  SI++ C +LA+L  G+QV
Sbjct: 293 KDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQV 352

Query: 337 HAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHG 396
           H+ +VR   D ++ +++ LI MY KCG++   +++F   S +D+V W S++ GY  HG G
Sbjct: 353 HSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFG 412

Query: 397 KEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGC 455
           ++A+E+F EM  SG  PD I F+ VL+AC + G V EGL+ F+SM + Y V+   E Y C
Sbjct: 413 EKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEHYAC 472

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM 515
           +VDLLGRAG++ EA  LI++MP + D  VWG LL AC+ H+  +L ++AA ++L L+P+ 
Sbjct: 473 MVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTHKNLDLAEIAAKKLLQLEPSS 532

Query: 516 MGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHT 575
            G YI+LSN+YA++ +W++ A+ RK MR     K  G SWIEV +KV  F       SH 
Sbjct: 533 AGPYILLSNLYASQSRWKDVAELRKTMRARNVSKSPGCSWIEVDNKVHMFTGGGS-ASHP 591

Query: 576 QY--VYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           ++  +   LE L   + E  Y PD   ++HD++ E
Sbjct: 592 EHEMIMKKLEKLGASLREAGYCPDGSFVMHDVDEE 626



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 102/365 (27%), Positives = 176/365 (48%), Gaps = 28/365 (7%)

Query: 40  LIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTV 99
           +IP    + +TN+I     EG + EAR +FDEMP+R+VV+WT MI+GY   N  + A  +
Sbjct: 165 MIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKL 224

Query: 100 FVEMV-RNEVNPNA----FTLSSVL-KACKGMKSL--SNAALVHGMAIKEGLEGSIYVEN 151
           F  M  +NEV   A    +T S  + +A +  K++     A  +GM +  GL G +    
Sbjct: 225 FEVMPDKNEVTWTAMLKGYTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLNGEV---- 280

Query: 152 SLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVE 211
                          AR VF+ MK K+D +W+ LI  Y   G     L +F  M  EGV 
Sbjct: 281 -------------GKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVR 327

Query: 212 MNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQY 271
            N  S    +  C S   +  G+ +H+ +++  F  ++ V + ++ MY +   L    + 
Sbjct: 328 PNFPSIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRV 387

Query: 272 FDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAAL 330
           FD  + KD++ WN+IIAGY + G  E  L +F +M S   +P+  TF  +++AC     +
Sbjct: 388 FDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKV 447

Query: 331 SCGQQVHAGIVRR-GLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMI 388
             G ++   +  +  +D        ++D+  + G ++++  +   M  + D + W +++ 
Sbjct: 448 KEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLS 507

Query: 389 GYGAH 393
               H
Sbjct: 508 ACRTH 512



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 159/334 (47%), Gaps = 27/334 (8%)

Query: 215 YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGS-NLPVMNSILDMYCRFDCLSDANQYFD 273
           +S S A+  C  + +   G++  A  I     S  +   N+I+  Y      ++A + FD
Sbjct: 12  FSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFD 71

Query: 274 EMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSC 332
           +M E++ I+WN +++GY K+G  SE   +F KM  ER   N  ++TS++        +  
Sbjct: 72  KMPERNTISWNGLVSGYVKNGMISEARKVFDKM-PER---NVVSWTSMVRGYVQEGLIDE 127

Query: 333 GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA 392
            + +   +  + +     +   LI+     G + +++++F  +  +D+V  T+M+ G  +
Sbjct: 128 AELLFWRMPEKNVVSWTVMLGGLIE----DGRVDEARRLFDMIPVKDVVASTNMIGGLCS 183

Query: 393 HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEI 452
            G   EA E+FDEM +  V    + + ++++  +    VD   K F+ M D     N+  
Sbjct: 184 EGRLSEAREIFDEMPQRNV----VAWTSMISGYAMNNKVDVARKLFEVMPD----KNEVT 235

Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALR-VLD- 510
           +  ++    R+GR+ EA EL K+MP KP  +  G ++G          G++   R V D 
Sbjct: 236 WTAMLKGYTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLN------GEVGKARWVFDQ 289

Query: 511 LKPNMMGTYIILSNIYAAEG-KWEEFAKFRKIMR 543
           +K    GT+  L  IY  +G + E  A F  + R
Sbjct: 290 MKEKDDGTWSALIKIYERKGFELEALALFSLMQR 323


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 196/571 (34%), Positives = 301/571 (52%), Gaps = 50/571 (8%)

Query: 40  LIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTV 99
           L P+  ++    ++ +Y   G I+EAR LFD   E D +SW  ++AGY   +   +A  +
Sbjct: 225 LAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKM 284

Query: 100 FVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
           F +M + +V                   +S   +V G A +                   
Sbjct: 285 FNKMPQRDV-------------------VSWNTMVSGYARRG------------------ 307

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
               M  AR +F+    ++  +WT +++GYA +G       VF  M     + N  S++ 
Sbjct: 308 ---DMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAM----PDKNAVSWNA 360

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
            + A      +   K +  A+       N+   N++L  Y +   L +A   F  M +KD
Sbjct: 361 MMAAYVQRRMMEEAKELFDAMP----CRNVASWNTMLTGYAQAGMLDEARAIFGMMPQKD 416

Query: 280 LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
            ++W  ++A Y + G S E L +F +M       N   F  +++ CA +AAL CG Q+H+
Sbjct: 417 AVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHS 476

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
            +++ G      + NAL+ MY KCG++ ++   F EM +RD+V+W +M+ GY  HG GKE
Sbjct: 477 RLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKE 536

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVV 457
           A+E+FD M K+  +PD I  + VL ACSH+GLV++G+ YF SM+ D+ V    E Y C++
Sbjct: 537 ALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMI 596

Query: 458 DLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG 517
           DLLGRAGR+ EA  L+K MPF+PD ++WG LLGA + HR   LG+ AA ++ +L+P   G
Sbjct: 597 DLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFELEPENAG 656

Query: 518 TYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQY 577
            Y++LSNIYA+ GKW +  K R IM   G KK  G SWIEV++KV  F   D +    + 
Sbjct: 657 MYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWIEVQNKVHTFSVGDSVHPERED 716

Query: 578 VYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           +Y  LE L   M +  Y    D ++HD+E E
Sbjct: 717 IYAFLEDLDIRMKKAGYVSATDMVLHDVEEE 747



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 110/467 (23%), Positives = 190/467 (40%), Gaps = 112/467 (23%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P   S+    +I S+ + GL+  AR  FD  PE+D VSW  M+A Y       +A  +F
Sbjct: 195 MPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELF 254

Query: 101 VEMVR-NEVNPNAF-----TLSSVLKACKGMKSLSN------------------------ 130
                 + ++ NA        S + +A K    +                          
Sbjct: 255 DSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARR 314

Query: 131 -------------AALVHGMAIKEGLEGSIYVENSLMDVYATCCISM----------DNA 167
                         A+V G A    LE +  V +++ D  A    +M          + A
Sbjct: 315 LFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEA 374

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSG------------------------NGYGGLG--- 200
           + +F+ M  +N  SW T++TGYA +G                          Y  +G   
Sbjct: 375 KELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSE 434

Query: 201 ----VFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSIL 256
               +FKEM   G  +N  +F+  +  CA    +  G  +H+ +IK G+G    V N++L
Sbjct: 435 ETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALL 494

Query: 257 DMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCF 315
            MY +   + +A+  F+EM E+D+++WNT+IAGY + G   E L +F  M+     P+  
Sbjct: 495 AMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDI 554

Query: 316 TFTSIIAACATLAALSCGQQVHAGIVRRGL--------DGNLALA----NALIDMYAKCG 363
           T   ++AAC+           H+G+V +G+        D  +A        +ID+  + G
Sbjct: 555 TLVGVLAACS-----------HSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAG 603

Query: 364 NISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGH---GKEAIELFDEM 406
            + ++  +  +M  + D   W +++     H +   G+ A E   E+
Sbjct: 604 RLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFEL 650



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 141/339 (41%), Gaps = 85/339 (25%)

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +A  +F  M  ++  ++ T++ GYA +G     L  F+ +        P SFS       
Sbjct: 125 DAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIP------RPDSFS------- 171

Query: 226 STGWVSFGKLIHAAVIKHGFGS------NLPVMNSI-----LDMYCRFDCLSDANQYFDE 274
                 +  L+HA  +             +PV +S+     +  +     +S A  YFD 
Sbjct: 172 ------YNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDL 225

Query: 275 MTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG 333
             EKD ++WN ++A Y ++G   E   +F      R   +  ++                
Sbjct: 226 APEKDAVSWNGMLAAYVRNGRIQEARELFDS----RTEWDAISW---------------- 265

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
                              NAL+  Y +   I ++QK+F++M  RD+V+W +M+ GY   
Sbjct: 266 -------------------NALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARR 306

Query: 394 GHGKEAIELFDEMVKSGVRPDRIVF--MAVLTACSHAGLVDEGLKYFKSMNDYN-VNPNK 450
           G   EA  LFD      V P R VF   A+++  +  G+++E  + F +M D N V+ N 
Sbjct: 307 GDMAEARRLFD------VAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNA 360

Query: 451 EIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
            +   V   +     ++EA EL  +MP + + + W  +L
Sbjct: 361 MMAAYVQRRM-----MEEAKELFDAMPCR-NVASWNTML 393



 Score = 45.4 bits (106), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 9/139 (6%)

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
           N  I  + + G + D++++F+ M  R   T+ +M+ GY A+G   +A+  F    +S  R
Sbjct: 111 NRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFF----RSIPR 166

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
           PD   +  +L    HA  V   L   +++ D     +   Y  ++      G V  A   
Sbjct: 167 PDSFSYNTLL----HALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHY 222

Query: 473 IKSMPFKPDESVWGPLLGA 491
               P K D   W  +L A
Sbjct: 223 FDLAPEK-DAVSWNGMLAA 240


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 193/594 (32%), Positives = 316/594 (53%), Gaps = 34/594 (5%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A +LI  Y   G ++  R +FDEM ER+VVSWT +I GY+  N   +A  +F EMV   
Sbjct: 159 VANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVG 218

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V PN  T+   + AC  +K L     V  +  + G++ +  V N+L+D+Y  C   M   
Sbjct: 219 VEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVNALLDMYMKCG-DMYAV 277

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R +F++   KN V + T+++ Y   G     L V  EML +G   +  +    + ACA  
Sbjct: 278 REIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQL 337

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
           G +S GK  HA V ++G      + N+I+DMY +      A + FD M+ K ++TWN++I
Sbjct: 338 GDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLI 397

Query: 288 AGYEKSGS--------------------------------SECLNMFSKMKSERFSPNCF 315
           AG  + G                                  E +++  +M+++    +  
Sbjct: 398 AGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRV 457

Query: 316 TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEM 375
           T   I +AC  L AL   + ++  I +  +  ++ L  AL+DM+++CG+  ++ ++F  M
Sbjct: 458 TMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENM 517

Query: 376 SDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGL 435
             RD+  WT+ +      G+ K AIELFDEM+K  V+ D  VF+A+LTA SH G VD+G 
Sbjct: 518 EKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGGYVDQGR 577

Query: 436 KYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKE 494
           + F +M   + V+P    YGC+VDLLGRAG ++EA++L+KSMP KP++ +WG  L AC++
Sbjct: 578 QLFWAMEKIHGVSPQIVHYGCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSFLAACRK 637

Query: 495 HRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMS 554
           H+       A  ++  L P  +G +++LSNIYA+ GKW + A+ R  M+  G +K  G S
Sbjct: 638 HKNVEFANYADEKITQLAPEKVGIHVLLSNIYASAGKWNDVARVRLQMKEKGFQKVAGSS 697

Query: 555 WIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
            IEV   +  F + D+  +    +  +L+ +   +++  Y PD   ++ D++ +
Sbjct: 698 SIEVHGLIREFTSGDESHTENAQIGLMLQEINCRISQVGYVPDTTNVLVDVDEQ 751



 Score =  218 bits (554), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 161/571 (28%), Positives = 265/571 (46%), Gaps = 66/571 (11%)

Query: 12  TFHCHKIPPIIKQSLQSVKKSSIQSDPPLIP---------KGPSILATNLIKSYFDEGLI 62
           T H    P ++  + Q  K SS+Q+   LI          K        LI +    G  
Sbjct: 7   TLHQSSSPLLLPTTTQKPKNSSLQTCKTLIELKQLHCNMLKKGVFNINKLIAACVQMGTH 66

Query: 63  EE---ARTLF--DEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV-RNEVNPNAFTLS 116
           E    A   F  DE  +  + +   +I GY +     +A  +++ M+    + P+ FT  
Sbjct: 67  ESLNYALNAFKEDEGTKCSLYTCNTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFP 126

Query: 117 SVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW 176
            +L AC  + + S    VHG+ +K GL   ++V NSL+  YA C   +D  R VF++M  
Sbjct: 127 FLLSACSKIMAFSEGVQVHGVVVKMGLVKDLFVANSLIHFYAACG-KVDLGRKVFDEMLE 185

Query: 177 KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLI 236
           +N VSWT+LI GY+        + +F EM+  GVE NP +   A+ ACA    +  GK +
Sbjct: 186 RNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKV 245

Query: 237 HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-S 295
              + + G  SN  V+N++LDMY +   +    + FDE ++K+L+ +NTI++ Y + G +
Sbjct: 246 CNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLA 305

Query: 296 SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
            E L +  +M  +   P+  T  S IAACA L  LS G+  HA + R GL+    ++NA+
Sbjct: 306 GEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAI 365

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH-------------------- 395
           IDMY KCG    + K+F  MS++ +VTW S++ G    G                     
Sbjct: 366 IDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWN 425

Query: 396 -----------GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDY 444
                       +EAI+L  EM   G++ DR+  + + +AC + G +D     +  +   
Sbjct: 426 TMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYIEKN 485

Query: 445 NVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLA 504
           +++ + ++   +VD+  R G    A  + ++M  K D S W                  A
Sbjct: 486 DIHIDMQLGTALVDMFSRCGDPLNAMRVFENME-KRDVSAW-----------------TA 527

Query: 505 ALRVLDLKPNMMGTYIILSNIYAAEGKWEEF 535
           A+RV  ++ N  G   +   +   + K ++F
Sbjct: 528 AIRVKAVEGNAKGAIELFDEMLKQDVKADDF 558


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 184/561 (32%), Positives = 302/561 (53%), Gaps = 39/561 (6%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I+   L+ SY     ++ A  LF EMPE D                              
Sbjct: 180 IVGNTLVDSYCKSNRLDLACQLFKEMPEID------------------------------ 209

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
                +FT ++VL A  G+  +     +H   IK     +++V N+L+D Y+     +D 
Sbjct: 210 -----SFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVID- 263

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR +F++M  ++ VS+  +I+GYA  G       +F+E+     +   + F+  +   ++
Sbjct: 264 ARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASN 323

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
           T     G+ IHA  I     S + V NS++DMY +     +A   F  +T +  + W  +
Sbjct: 324 TLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAM 383

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+ Y + G   E L +F+KM+      +  TF S++ A A++A+LS G+Q+H+ I++ G 
Sbjct: 384 ISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGF 443

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             N+   +AL+D+YAKCG+I D+ + F EM DR++V+W +M+  Y  +G  +  ++ F E
Sbjct: 444 MSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKE 503

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAG 464
           MV SG++PD + F+ VL+ACSH+GLV+EGL +F SM   Y ++P +E Y  VVD+L R+G
Sbjct: 504 MVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSG 563

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP-NMMGTYIILS 523
           R  EA +L+  MP  PDE +W  +L AC+ H+   L + AA ++ +++       Y+ +S
Sbjct: 564 RFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMS 623

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           NIYAA G+WE  +K  K MR  G KK    SW+E++ +   F AND+     + +   ++
Sbjct: 624 NIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKID 683

Query: 584 MLIRHMNETAYEPDIDCLIHD 604
           ML + M E  Y+PD  C +H+
Sbjct: 684 MLTKTMEELGYKPDTSCALHN 704



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 130/454 (28%), Positives = 224/454 (49%), Gaps = 42/454 (9%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P   ++    +I  Y   G + EAR LFD M ER  V+WT++I GY+  N   +A+ +F
Sbjct: 73  MPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELF 132

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
           V+M R    P+  T  ++L  C G +  +    V    IK G +  + V N+L+D Y   
Sbjct: 133 VQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSY--- 189

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
           C S    RL   D+  +                       +FKEM     E++  SF+ A
Sbjct: 190 CKS---NRL---DLACQ-----------------------LFKEM----PEID--SFTFA 214

Query: 221 VRACASTGW--VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK 278
              CA+ G   +  G+ IH+ VIK  F  N+ V N++LD Y + D + DA + FDEM E+
Sbjct: 215 AVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQ 274

Query: 279 DLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
           D +++N II+GY   G  +   ++F +++   F    F F ++++  +       G+Q+H
Sbjct: 275 DGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIH 334

Query: 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
           A  +    D  + + N+L+DMYAKCG   +++ IF+ ++ R  V WT+M+  Y   G  +
Sbjct: 335 AQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYE 394

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVV 457
           E ++LF++M ++ V  D+  F ++L A +    +  G +    +       N      ++
Sbjct: 395 EGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALL 454

Query: 458 DLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
           D+  + G +K+A +  + MP +   S W  ++ A
Sbjct: 455 DVYAKCGSIKDAVQTFQEMPDRNIVS-WNAMISA 487



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 119/279 (42%), Gaps = 44/279 (15%)

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS 295
           I A ++K GF  +    N  +  + +   LS A Q F++M  K+ ++ N +I+GY KSG+
Sbjct: 34  IDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGN 93

Query: 296 --------------------------------SECLNMFSKMKSERFSPNCFTFTSIIAA 323
                                            E   +F +M+     P+  TF ++++ 
Sbjct: 94  LGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSG 153

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTW 383
           C      +   QV   I++ G D  L + N L+D Y K   +  + ++F EM + D  T+
Sbjct: 154 CNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSFTF 213

Query: 384 TSMM---IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS 440
            +++   IG      G++ I  F  ++K+    +  V  A+L   S    V +  K F  
Sbjct: 214 AAVLCANIGLDDIVLGQQ-IHSF--VIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDE 270

Query: 441 MNDYN-VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPF 478
           M + + V+ N  I G   D     G+ K A++L + + F
Sbjct: 271 MPEQDGVSYNVIISGYAWD-----GKHKYAFDLFRELQF 304



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 86/203 (42%), Gaps = 35/203 (17%)

Query: 310 FSPNCFTFTSIIAACATLAA----LSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNI 365
           F PN     + + + A+L +    L+    + A IV+ G D + + +N  +  + K G +
Sbjct: 4   FRPNALQNLTSLTSLASLQSPKLRLNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGEL 63

Query: 366 SDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV------------------ 407
           S ++++F +M  ++ V+   M+ GY   G+  EA +LFD MV                  
Sbjct: 64  SQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLN 123

Query: 408 -------------KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG 454
                        + G  PD + F+ +L+ C+   + ++  +    +     +    +  
Sbjct: 124 QFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGN 183

Query: 455 CVVDLLGRAGRVKEAYELIKSMP 477
            +VD   ++ R+  A +L K MP
Sbjct: 184 TLVDSYCKSNRLDLACQLFKEMP 206


>gi|38567725|emb|CAE76014.1| B1358B12.23 [Oryza sativa Japonica Group]
          Length = 918

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 183/543 (33%), Positives = 303/543 (55%), Gaps = 14/543 (2%)

Query: 45  PSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
           PS++++ L   Y      E+AR LF E+PE+D+VSWT +I  Y       +A  +F+ M 
Sbjct: 250 PSVVSS-LFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGME 308

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
            + + P+   +S +L        +      H   ++     S+ + N+L+ +YA C   +
Sbjct: 309 ESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKC-KQV 367

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLL---EGVEMNPYSFSIAV 221
           D A  VF  +  ++  SW++++  Y  +G     L +++EM     +  E +  S    +
Sbjct: 368 DIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISII 427

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
            +C+  G +  G+  H   IKH  G N  V N+++ MY R      A + F  +  KD++
Sbjct: 428 SSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVV 487

Query: 282 TWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           TW+ +I+ Y   G S + L ++ +M +E   PN  T  S+I++CA LAAL  G+ +H+ +
Sbjct: 488 TWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHV 547

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
              GL+ +L++  AL+DMY KCG +  ++K+F  M +RD+VTW  M+ GYG HG   +A+
Sbjct: 548 KDVGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQAL 607

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLL 460
           +LF  M +  V+P+ + F+A+L+AC HAGLVD+G + F  M +Y++ PN + Y C+VDLL
Sbjct: 608 KLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDLL 667

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520
           G++G ++EA +++ +MP +PD  +WG LLGACK H    +G   A +     P   G YI
Sbjct: 668 GKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPENDGYYI 727

Query: 521 ILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYG 580
           ++SN Y +  KW E  K R +M+  G +K +G S I+    +CGF+ N      TQ+ + 
Sbjct: 728 LMSNSYGSAEKWNEIEKLRDMMKNHGVEKSIGWSTID----ICGFMKNQL----TQWQHS 779

Query: 581 VLE 583
           + E
Sbjct: 780 LFE 782



 Score =  225 bits (573), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 142/490 (28%), Positives = 260/490 (53%), Gaps = 12/490 (2%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   +A++L+  Y   G + +A  LFDEMPERDVV+WT +I+G        +  +  V M
Sbjct: 143 GSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRM 202

Query: 104 VRNE----VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
           VR+       PN+ T+ S L+AC  +  LS    +HG  +K G+     V +SL  +Y T
Sbjct: 203 VRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMY-T 261

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
            C S ++AR++F ++  K+ VSWT+LI  Y  +G+    + +F  M   G++ +    S 
Sbjct: 262 KCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISC 321

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
            +    +   V  GK  HAA+++  FG ++ + N+++ MY +   +  A   F  + ++D
Sbjct: 322 LLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRD 381

Query: 280 LITWNTIIAGYEKSG-SSECLNMFSKMK---SERFSPNCFTFTSIIAACATLAALSCGQQ 335
             +W++++  Y K+G   +CL ++ +M+    + F  +  +  SII++C+ L  L  GQ 
Sbjct: 382 TDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQS 441

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
            H   ++     N ++ANALI MY +CGN   ++KIF  +  +D+VTW++++  Y   GH
Sbjct: 442 AHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGH 501

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455
            K+A+ L+D+M+  GV+P+    ++V+++C++   ++ G      + D  +  +  I   
Sbjct: 502 SKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTA 561

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH--RLPNLGKLAALRVLDLKP 513
           +VD+  + G++  A ++  SM  + D   W  ++     H   +  L   + +   ++KP
Sbjct: 562 LVDMYMKCGQLGIARKMFDSM-LERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKP 620

Query: 514 NMMGTYIILS 523
           N +    ILS
Sbjct: 621 NSLTFLAILS 630



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 152/321 (47%), Gaps = 10/321 (3%)

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           W +L+     + +    L   + M   G   + ++  +   A A  G +  G  +HA  +
Sbjct: 75  WNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSV 134

Query: 242 KHGF---GSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS--- 295
           + G      ++ V +S++ MY R   + DA + FDEM E+D++ W  +I+G   +G    
Sbjct: 135 RFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGE 194

Query: 296 --SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353
             S  + M          PN  T  S + AC  L  LS G  +H   V+ G+    ++ +
Sbjct: 195 GLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVS 254

Query: 354 ALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP 413
           +L  MY KC +  D++ +F E+ ++DLV+WTS++  Y   GH ++A+ELF  M +SG++P
Sbjct: 255 SLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQP 314

Query: 414 DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELI 473
           D +V   +L    +   V  G  +  ++   N   +  I   ++ +  +  +V  A  + 
Sbjct: 315 DEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVF 374

Query: 474 KSMPFKPDESVWGPLLGA-CK 493
           + M  + D   W  ++ A CK
Sbjct: 375 R-MLHQRDTDSWSSMVVAYCK 394


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 195/577 (33%), Positives = 310/577 (53%), Gaps = 48/577 (8%)

Query: 45  PSILATNLIKSYFDEGLIEEARTLFD----------EMPERDVVSWTVMIAGYTSFNCHN 94
           P  LA  LI  Y   G +  ARTLFD          + P   + +   M+  Y +     
Sbjct: 58  PHFLA-RLIILYSKLGDLHSARTLFDHRHHHHHGHTQAPNSFLCN--TMLRAYANAGRSY 114

Query: 95  QAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLM 154
           +A  +++ M R  V  N FT   VLK C          +VHG  ++ G    ++VE +L+
Sbjct: 115 EAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALV 174

Query: 155 DVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP 214
           D+YA C   + +A  VF+ M  ++ V WT +IT Y  +      L +F++M  EG   + 
Sbjct: 175 DMYAKCG-EIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDE 233

Query: 215 YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE 274
            +   A+   ++ G +  G++                             +S A   FD 
Sbjct: 234 IT---AISVASAVGQLGDGRM----------------------------AISRARLVFDR 262

Query: 275 MTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG 333
           M E++ I+WN++++GY ++G  ++ L++F++M++    PN  T   +++AC+ L +   G
Sbjct: 263 MEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLG 322

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFS--EMSDRDLVTWTSMMIGYG 391
           +++H  ++   +D +  L NA++DMY KCG++  + ++F+  E+ +RD+ +W  ++ GYG
Sbjct: 323 RKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYG 382

Query: 392 AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE 451
            HGHGKEA+ELF  M   GV P+ I F ++L+ACSHAGL+DEG K F  M   +V P  +
Sbjct: 383 VHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKLSVRPEMK 442

Query: 452 IYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDL 511
            Y C+VD+LGRAG + EA+ LIK +P +P + VWG LL AC+ H    LG++AA  +  L
Sbjct: 443 HYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQL 502

Query: 512 KPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKM 571
           +P   G Y+++SNIYAA  KW+E    R+ M+  G KK    S IE   +V GF   D+ 
Sbjct: 503 EPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQS 562

Query: 572 GSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
             + + VY  +E L   M    Y PD+ C++HD+E E
Sbjct: 563 SPYYREVYRKVESLAIEMKMVGYVPDLSCVLHDVEPE 599



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 101/206 (49%), Gaps = 10/206 (4%)

Query: 234 KLIHAAVIKHGFGSNLP-VMNSILDMYCRFDCLSDANQYFDEM--------TEKDLITWN 284
           KLIH+++   GF  + P  +  ++ +Y +   L  A   FD             +    N
Sbjct: 42  KLIHSSLSTRGFLLHTPHFLARLIILYSKLGDLHSARTLFDHRHHHHHGHTQAPNSFLCN 101

Query: 285 TIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           T++  Y  +G S E ++++  M+      N FT+  ++  CA+      G+ VH  +VR 
Sbjct: 102 TMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRT 161

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G   +L +  AL+DMYAKCG I D+ ++F  M  RD+V WT+M+  Y       +A+ LF
Sbjct: 162 GFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLF 221

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAG 429
            +M + G   D I  ++V +A    G
Sbjct: 222 RKMQEEGFLGDEITAISVASAVGQLG 247


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 195/566 (34%), Positives = 309/566 (54%), Gaps = 19/566 (3%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYT-------SFNCHNQAWTVFVEMV 104
           LI  Y   G + EA  LF ++  + VVSW  MI  Y+       +F+   + W     M 
Sbjct: 354 LIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELME 413

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
            NEV     T+ ++L AC     L +   +HG +++   +    + N+ +  YA C  S+
Sbjct: 414 VNEV-----TILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCG-SL 467

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
             A  VF  M  K+  SW  +I G+A +G+    L  + EM   G+  + +S    + AC
Sbjct: 468 VFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLAC 527

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSD--ANQYFDEMTEKDLIT 282
              G + +GK IH  V+++G   N  V  S+L +Y  F C        YF+ M +K+ + 
Sbjct: 528 GRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLY--FHCSKPFYGRTYFETMGDKNSVC 585

Query: 283 WNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           WN +++GY ++   +E L++F +M S+   P+     SI+ AC+ L+AL  G++VH   +
Sbjct: 586 WNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFAL 645

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           +  L  +  +A +L+DMYAK G +  SQ+IF+ ++ +++ +W  M+ G+G HG G +A+E
Sbjct: 646 KNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVE 705

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLL 460
           LF++M +S  +PDR  F+ VL AC HAGLV EGL Y   M   Y + P  E Y CV+D+L
Sbjct: 706 LFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDML 765

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520
           GRAGR+ EA   I  MP +PD  +W  LL +   +    +G+  A ++L L+ N   +YI
Sbjct: 766 GRAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLLALEANKADSYI 825

Query: 521 ILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYG 580
           +LSN+YA  GKW+     R+ M+ +  +K+VG SWIE+R KV  FIA +     +  +  
Sbjct: 826 LLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIAGENSNPSSDEIRK 885

Query: 581 VLEMLIRHMNETAYEPDIDCLIHDLE 606
           +   L + + E  Y PD  C++H+LE
Sbjct: 886 MWNRLEKQIVEIGYTPDCSCVLHELE 911



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 142/530 (26%), Positives = 250/530 (47%), Gaps = 46/530 (8%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G  +L T LI  Y   G   E+R +FD +  +++  W  +++GY     +++A   F+E+
Sbjct: 141 GDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLEL 200

Query: 104 VR-NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           +   E  P+ FT   ++KAC G   +     VHGMA+K GL   ++V N+++ +Y  C  
Sbjct: 201 ISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGF 260

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP--YSFSIA 220
            +D A  +F+ M  +N +SW +LI G++ +G        F+ +L  G  + P   +    
Sbjct: 261 -LDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTL 319

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           +  C+  G V  G +IH   +K G    L V N+++DMY +  CLS+A   F ++  K +
Sbjct: 320 LPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSV 379

Query: 281 ITWNTIIAGYEKSG-SSECLNMFSK--MKSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
           ++WN++I  Y + G   E  ++  K  M+ E    N  T  +++ AC   + L   + +H
Sbjct: 380 VSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALH 439

Query: 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
              +R        + NA I  YAKCG++  ++ +F  M+ + + +W +++ G+  +G   
Sbjct: 440 GYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPI 499

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG-------LKYFKSMNDY------ 444
           +A++ + EM + G+ PD    +++L AC   GL+  G       L+    MN +      
Sbjct: 500 KALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLL 559

Query: 445 --NVNPNKEIYG-CVVDLLGRAGRV---------------KEAYELIKSM---PFKPDES 483
               + +K  YG    + +G    V                EA  L + M     +PDE 
Sbjct: 560 SLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEI 619

Query: 484 VWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII---LSNIYAAEG 530
               +LGAC +     LGK   +    LK ++M    +   L ++YA  G
Sbjct: 620 AIASILGACSQLSALGLGK--EVHCFALKNSLMEDNFVACSLMDMYAKSG 667



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 150/296 (50%), Gaps = 9/296 (3%)

Query: 137 MAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGY 196
           + +     G   +   L+ +Y+ C   ++ +RLVF+ +  KN   W  L++GY  +    
Sbjct: 133 LCVSSQFSGDFVLNTRLITMYSICGYPLE-SRLVFDRLLNKNLFQWNALVSGYVRNELYD 191

Query: 197 GGLGVFKEMLLEGVEMNP--YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNS 254
             +  F E L+   E  P  ++F   ++AC     +  GK +H   +K G   +L V N+
Sbjct: 192 EAIHTFLE-LISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNA 250

Query: 255 ILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKM--KSERFS 311
           ++ +Y +   L +A + FD+M E++LI+WN++I G+ ++G   E    F  +    +   
Sbjct: 251 MIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLI 310

Query: 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKI 371
           P+  T  +++  C+    +  G  +H   V+ GL   L + NALIDMY+KCG +S++  +
Sbjct: 311 PDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAIL 370

Query: 372 FSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE--MVKSGVRPDRIVFMAVLTAC 425
           F ++ ++ +V+W SM+  Y   G   E  +L  +  M +  +  + +  + +L AC
Sbjct: 371 FRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPAC 426



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 134/276 (48%), Gaps = 6/276 (2%)

Query: 221 VRACASTGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
           ++ C     V  G KL     +   F  +  +   ++ MY       ++   FD +  K+
Sbjct: 114 LQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKN 173

Query: 280 LITWNTIIAGYEKSG-SSECLNMFSKMKS-ERFSPNCFTFTSIIAACATLAALSCGQQVH 337
           L  WN +++GY ++    E ++ F ++ S   F P+ FTF  +I AC     +  G+ VH
Sbjct: 174 LFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVH 233

Query: 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
              V+ GL  +L + NA+I +Y KCG + ++ ++F +M +++L++W S++ G+  +G   
Sbjct: 234 GMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWL 293

Query: 398 EAIELFDEMVKS--GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455
           EA   F  +++S  G+ PD    + +L  CS  G VD G+          +     +   
Sbjct: 294 EAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNA 353

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
           ++D+  + G + EA  L + +  K   S W  ++GA
Sbjct: 354 LIDMYSKCGCLSEAAILFRKIENKSVVS-WNSMIGA 388



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 123/241 (51%), Gaps = 5/241 (2%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S +A +L+  YF        RT F+ M +++ V W  M++GY+     N+A ++F +M+ 
Sbjct: 552 SFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLS 611

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           + + P+   ++S+L AC  + +L     VH  A+K  L    +V  SLMD+YA     + 
Sbjct: 612 DGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGF-LG 670

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +++ +FN +  K   SW  +ITG+   G G   + +F++M     + + ++F   ++AC 
Sbjct: 671 HSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACC 730

Query: 226 STGWVSFGKLIHAAVIK--HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLIT 282
             G VS G L + A ++  +     L     ++DM  R   L++A  + +EM E+ D   
Sbjct: 731 HAGLVSEG-LNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKI 789

Query: 283 W 283
           W
Sbjct: 790 W 790


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 194/586 (33%), Positives = 317/586 (54%), Gaps = 32/586 (5%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERD-----VVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           L+  Y   GL+++A+ LF  +   D     VV+W  M++         +A  V  +MV  
Sbjct: 206 LLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVAR 265

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG-LEGSIYVENSLMDVYATCCISMD 165
            V P+  T +S L AC  ++ LS    +H   +K+  L  + +V ++L+D+YA+    + 
Sbjct: 266 GVRPDGITFASALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASH-ERVG 324

Query: 166 NARLVFNDMK--WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAVR 222
            AR VF+ +    +    W  ++ GYA +G     L +F  M  E GV  +  + +  + 
Sbjct: 325 VARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLP 384

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           ACA +   +  + +H  V+K G   N  V N+++D+Y R   +  A   F  +  +D+++
Sbjct: 385 ACARSETFAGKEAVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVS 444

Query: 283 WNTIIAGYEKSGS-SECLNMFSKMKSE-RFS-----------------PNCFTFTSIIAA 323
           WNT+I G    G   +   +  +M+ + RF+                 PN  T  +++  
Sbjct: 445 WNTLITGCVVQGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPG 504

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTW 383
           CA LAA + G+++H   +R  LD ++A+ +AL+DMYAKCG ++ S+ +F  +  R+++TW
Sbjct: 505 CAMLAAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKRNVITW 564

Query: 384 TSMMIGYGAHGHGKEAIELFDEMVKSG-VRPDRIVFMAVLTACSHAGLVDEGLKYFKSM- 441
             +++ YG HG G EAI LFD MV S   +P+ + F+A L ACSH+G+VD G++ F SM 
Sbjct: 565 NVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHSMK 624

Query: 442 NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDESVWGPLLGACKEHRLPNL 500
            ++ V P  +++ C VD+LGRAGR+ EAY +I SM P +   S W   LGAC+ HR   L
Sbjct: 625 RNHGVQPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLHRNVPL 684

Query: 501 GKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRD 560
           G++AA R+  L+P+    Y++L NIY+A G WE+ ++ R  MR  G  KE G SWIE+  
Sbjct: 685 GEIAAERLFQLEPDEASHYVLLCNIYSAAGLWEKSSEVRNRMRQRGVSKEPGCSWIELDG 744

Query: 561 KVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
            +  F+A +     +  V+  ++ L   M    Y PD   ++HD+E
Sbjct: 745 VIHRFMAGESAHPESTLVHAHMDALWERMRNQGYTPDTSSVLHDIE 790



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 132/523 (25%), Positives = 256/523 (48%), Gaps = 51/523 (9%)

Query: 18  IPPIIKQS--------LQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLF 69
           +PP  K +        ++S+  ++++ D  L+      +A  L+ +Y   G +  A  LF
Sbjct: 62  LPPAAKSAAALRSLIAVRSIHGAALRRD--LLHGFTPAVANALLTAYARCGDLTAALALF 119

Query: 70  DEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN---EVNP-NAFTLSSVLKACKGM 125
           + MP RD V++  +IA    F    + W   ++ +R+   E +P ++FTL SVL AC  +
Sbjct: 120 NAMPSRDAVTFNSLIAALCLF----RRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHL 175

Query: 126 -KSLSNAALVHGMAIKEG-LEG-SIYVENSLMDVYATCCISMDNARLVFNDMKWKND--- 179
            + L      H  A+K G L+G   +  N+L+ +YA   + +D+A+++F  +   +    
Sbjct: 176 AEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGL-VDDAQMLFGSVDTTDSPGG 234

Query: 180 --VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIH 237
             V+W T+++    SG     + V  +M+  GV  +  +F+ A+ AC+    +S G+ +H
Sbjct: 235 GVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMH 294

Query: 238 AAVIKHG-FGSNLPVMNSILDMYCRFDCLSDANQYFDEMT--EKDLITWNTIIAGYEKSG 294
           A V+K     +N  V ++++DMY   + +  A + FD +    + L  WN ++ GY ++G
Sbjct: 295 AYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAG 354

Query: 295 -SSECLNMFSKMKSER-FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
              E L +F++M++E    P+  T   ++ ACA     +  + VH  +++RG+  N  + 
Sbjct: 355 MDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRGMADNPFVQ 414

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG-- 410
           NAL+D+YA+ G++  ++ IF+ +  RD+V+W +++ G    GH  +A +L  EM + G  
Sbjct: 415 NALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRF 474

Query: 411 ----------------VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG 454
                           V P+ +  M +L  C+      +G +       + ++ +  +  
Sbjct: 475 TDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHALDSDIAVGS 534

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
            +VD+  + G +  +  +   +P K +   W  L+ A   H L
Sbjct: 535 ALVDMYAKCGCLALSRAVFDRLP-KRNVITWNVLIMAYGMHGL 576



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 124/300 (41%), Gaps = 58/300 (19%)

Query: 315 FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL--ALANALIDMYAKCGNISDSQKIF 372
           F       + A L +L   + +H   +RR L      A+ANAL+  YA+CG+++ +  +F
Sbjct: 60  FALPPAAKSAAALRSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARCGDLTAALALF 119

Query: 373 SEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH----- 427
           + M  RD VT+ S++           A++   +M+  G        ++VL ACSH     
Sbjct: 120 NAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHLAEDL 179

Query: 428 ---------------------------------AGLVDEGLKYFKSMNDYNVNPNKEI-- 452
                                             GLVD+    F S+ D   +P   +  
Sbjct: 180 RLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSV-DTTDSPGGGVVT 238

Query: 453 YGCVVDLLGRAGRVKEAYELIKSM---PFKPDESVWGPLLGACKEHRLPNLGKLAALRVL 509
           +  +V LL ++GR  EA E+I  M     +PD   +   L AC +  + +LG+     VL
Sbjct: 239 WNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVL 298

Query: 510 ---DLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM-GSKKEVGMSWIEVRDKVCGF 565
              DL  N       L ++YA+    E     R++   + G  +++G+ W  +   VCG+
Sbjct: 299 KDSDLAANSF-VASALVDMYASH---ERVGVARRVFDMVPGGHRQLGL-WNAM---VCGY 350


>gi|212274935|ref|NP_001130299.1| uncharacterized protein LOC100191393 [Zea mays]
 gi|194688780|gb|ACF78474.1| unknown [Zea mays]
 gi|414586171|tpg|DAA36742.1| TPA: hypothetical protein ZEAMMB73_518704 [Zea mays]
          Length = 695

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 199/610 (32%), Positives = 326/610 (53%), Gaps = 20/610 (3%)

Query: 18  IPPIIKQSLQSVK-KSSIQSDPPLIPKG---PSILATNLIKSYFDEGLIEEARTLFDEMP 73
           I  +++ S +S   +  +Q    +   G    ++L  NLI  Y   G ++ A  +F  M 
Sbjct: 7   IAGLLRASARSSSLRGGVQLHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEVFGGMR 66

Query: 74  ERDVVSWTVMIAGYTSFNCHNQAWTVFVEM-VRNEVNPNAFTLSSVLKACKGMKSLSNAA 132
           +R+VVSWT ++ G+           +  EM   +E  PN +TLS+ LKAC  +   +   
Sbjct: 67  DRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGDTAAGV 126

Query: 133 LVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDV-SWTTLITGYAH 191
            +HG+ ++ G +    V +SL+ VY+     + +AR VF+     + + +W  +++GYAH
Sbjct: 127 GIHGLCVRAGYQEHDVVASSLVLVYSKGG-RIGDARRVFDGAGLGSGIATWNAMVSGYAH 185

Query: 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIA--VRACASTGWVSFGKLIHAAVIKHGF--GS 247
           +G+G   L VF+EM     +  P  F+ A  ++AC+  G    G  +HAA+   GF   S
Sbjct: 186 AGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTASGFSTAS 245

Query: 248 NLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMK 306
           N  +  +++DMY +   L  A Q F+ +  K++I W  ++ G+ + G  +E L +F +  
Sbjct: 246 NAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVGHAQEGQVTEALELFRRFW 305

Query: 307 SERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNIS 366
                P+    +S++   A  A +  G+QVH   ++     +++  N+++DMY KCG   
Sbjct: 306 RSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTGTDVSAGNSIVDMYLKCGLPD 365

Query: 367 DSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS 426
           +++++F EM   ++V+WT+M+ G G HG G+EA+ LF+EM   GV PD + ++A+L+ACS
Sbjct: 366 EAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYLALLSACS 425

Query: 427 HAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVW 485
           HAGLVDE  +YF  +  D  V P  E Y C+VDLLGRAG ++EA +LI++MP +P   VW
Sbjct: 426 HAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELREARDLIRTMPMEPTVGVW 485

Query: 486 GPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545
             LL AC+ H+   +G+ A   +L +  +    Y+ LSN+ A  G+W E  K R  MR  
Sbjct: 486 QTLLSACRVHKDVAVGREAGDVLLAMDGDNPVNYVTLSNVLAEAGEWRECHKVRDAMRRR 545

Query: 546 GSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEP------DID 599
           G KK+ G SW+EV  +V  F         T    G +  ++R M     E       D  
Sbjct: 546 GLKKQGGCSWVEVGKEVHFFYGGGGE-EETHPQAGDIRRVLRDMETRMREQLGYNADDAR 604

Query: 600 CLIHDLEGET 609
             +HD++ E+
Sbjct: 605 FALHDVDEES 614


>gi|242066458|ref|XP_002454518.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
 gi|241934349|gb|EES07494.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
          Length = 834

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 189/592 (31%), Positives = 312/592 (52%), Gaps = 46/592 (7%)

Query: 7   LSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEAR 66
           LS A   H H I            K+   SD         ++ T ++  Y     + +AR
Sbjct: 261 LSTARQLHAHAI------------KNKFSSD--------RVVGTAIVDVYAKADSLVDAR 300

Query: 67  TLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMK 126
             F  +P   V +   M+ G        +A  +F  M R+ +     +LS V  AC  +K
Sbjct: 301 RAFFGLPNHTVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGIGFGVVSLSGVFSACAEVK 360

Query: 127 SLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLI 186
                          G +  + V N+++D+Y  C  ++  A LVF +M+ ++ VSW T+I
Sbjct: 361 ---------------GFDVDVCVRNAILDLYGKC-KALVEAYLVFQEMEQRDSVSWNTII 404

Query: 187 TGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFG 246
                +      +    EML  G+E + +++   ++ACA    + +G ++H   IK G G
Sbjct: 405 AALEQNECYEDTIVHLNEMLRSGMEADDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLG 464

Query: 247 SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE-KSGSSECLNMFSKM 305
            +  V ++++DMYC+   +++A +  D +  ++L++WN+IIAG+     S E    FS+M
Sbjct: 465 LDAFVSSTVVDMYCKCGMITEALKLHDRIGGQELVSWNSIIAGFSLNKQSEEAQKFFSEM 524

Query: 306 KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNI 365
                 P+ FT+ +++ +CA LA +  G+Q+H  I+++ + G+  +++ L+DMYAKCGN+
Sbjct: 525 LDMGVKPDHFTYATVLDSCANLATIELGKQIHGQIIKQEMLGDEFISSTLVDMYAKCGNM 584

Query: 366 SDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTAC 425
            DSQ +F ++   D V+W +M+ GY  HG G EA+E+F+   K+ V P+   F+AVL AC
Sbjct: 585 PDSQLMFEKVQKLDFVSWNAMICGYALHGQGFEALEMFERTQKANVAPNHATFVAVLRAC 644

Query: 426 SHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESV 484
           SH GL+D+G +YF  M   Y + P  E + C+          +EA + I+SMP + D  +
Sbjct: 645 SHVGLLDDGCRYFHLMTSRYKLEPQLEHFACM--------GPQEALKFIRSMPLEADAVI 696

Query: 485 WGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544
           W  LL  CK  +   + + AA  VL L P+    YI+LSN+YA  GKW + ++ R++MR 
Sbjct: 697 WKTLLSICKIRQDVEVAETAASNVLRLDPDDSSVYILLSNVYAESGKWVDVSRTRRLMRQ 756

Query: 545 MGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEP 596
              KKE G SWIEV+ ++ GF+  +K+   ++ VY +L  LI  M  + YEP
Sbjct: 757 GRLKKEPGCSWIEVQSEMHGFLVGEKVHPRSREVYEMLNNLICEMKLSGYEP 808



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 132/543 (24%), Positives = 240/543 (44%), Gaps = 79/543 (14%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P   ++    ++ +Y   G    A +L   MP+ DVVSW  +++GY           + 
Sbjct: 92  MPHRDTVSWNTMLTAYAHMGDTGMATSLLCVMPDPDVVSWNALLSGYCQRGMFRDLVGLS 151

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
           +EM R  V P+  TL+ +LKAC G+  L+    +H +A+K GLE  +   ++L+D+Y   
Sbjct: 152 IEMARCGVAPDRTTLAVLLKACGGLDDLALGVQIHALAVKTGLEMDVRAGSALVDMYGK- 210

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
           C S+++A   F+ M  +N VSW  +I G            V  E  + G+E+        
Sbjct: 211 CRSLEDALHFFHGMGERNSVSWGAVIAGC-----------VQNEQYMRGLEL-------- 251

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           +  C +   +S  + +HA  IK+ F S+  V  +I+D+Y + D L DA + F  +    +
Sbjct: 252 LCRCKAITCLSTARQLHAHAIKNKFSSDRVVGTAIVDVYAKADSLVDARRAFFGLPNHTV 311

Query: 281 ITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
            T N ++ G  ++G  +E + +F  M          + + + +ACA +            
Sbjct: 312 ETCNAMMVGLVRTGLGAEAMQLFQFMTRSGIGFGVVSLSGVFSACAEV------------ 359

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
              +G D ++ + NA++D+Y KC  + ++  +F EM  RD V+W +++     +   ++ 
Sbjct: 360 ---KGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNTIIAALEQNECYEDT 416

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL 459
           I   +EM++SG+  D   + +VL AC+    ++ GL          +  +  +   VVD+
Sbjct: 417 IVHLNEMLRSGMEADDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDM 476

Query: 460 LGRAGRVKEAYEL----------------------------------IKSMPFKPDESVW 485
             + G + EA +L                                  +  M  KPD   +
Sbjct: 477 YCKCGMITEALKLHDRIGGQELVSWNSIIAGFSLNKQSEEAQKFFSEMLDMGVKPDHFTY 536

Query: 486 GPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII---LSNIYAAEGKWEE----FAKF 538
             +L +C       LGK    ++  +K  M+G   I   L ++YA  G   +    F K 
Sbjct: 537 ATVLDSCANLATIELGKQIHGQI--IKQEMLGDEFISSTLVDMYAKCGNMPDSQLMFEKV 594

Query: 539 RKI 541
           +K+
Sbjct: 595 QKL 597



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/415 (23%), Positives = 189/415 (45%), Gaps = 68/415 (16%)

Query: 114 TLSSVLKACK--GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
           T S V + C   G  +L+     H   +  G   +++V N L+ +YA C     +A  VF
Sbjct: 31  TFSHVYQLCASAGHSALATGQAAHARMLVSGFVPTMFVSNCLLQMYARCG-GAAHAHGVF 89

Query: 172 NDMKWKNDVSWTTLITGYAHSGN------------------------GYGGLGVFKEMLL 207
           + M  ++ VSW T++T YAH G+                        GY   G+F++++ 
Sbjct: 90  DTMPHRDTVSWNTMLTAYAHMGDTGMATSLLCVMPDPDVVSWNALLSGYCQRGMFRDLVG 149

Query: 208 EGVEM-------NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYC 260
             +EM       +  + ++ ++AC     ++ G  IHA  +K G   ++   ++++DMY 
Sbjct: 150 LSIEMARCGVAPDRTTLAVLLKACGGLDDLALGVQIHALAVKTGLEMDVRAGSALVDMYG 209

Query: 261 RFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSI 320
           +   L DA  +F  M E++ ++W  +IAG        C+     M+             +
Sbjct: 210 KCRSLEDALHFFHGMGERNSVSWGAVIAG--------CVQNEQYMRG----------LEL 251

Query: 321 IAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDL 380
           +  C  +  LS  +Q+HA  ++     +  +  A++D+YAK  ++ D+++ F  + +  +
Sbjct: 252 LCRCKAITCLSTARQLHAHAIKNKFSSDRVVGTAIVDVYAKADSLVDARRAFFGLPNHTV 311

Query: 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS 440
            T  +MM+G    G G EA++LF  M +SG+    +    V +AC+        +K F  
Sbjct: 312 ETCNAMMVGLVRTGLGAEAMQLFQFMTRSGIGFGVVSLSGVFSACAE-------VKGF-- 362

Query: 441 MNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
             D +V     +   ++DL G+   + EAY + + M  + D   W  ++ A +++
Sbjct: 363 --DVDVC----VRNAILDLYGKCKALVEAYLVFQEME-QRDSVSWNTIIAALEQN 410


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 189/587 (32%), Positives = 328/587 (55%), Gaps = 33/587 (5%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y + G ++    +F+ M ER+VVSWT +I GY   +   +A ++F EMV   + P+
Sbjct: 172 LIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPS 231

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
           + T+  V+ AC  ++ L     V     + GL+ +  + N+L+D+Y  C  ++D A+ +F
Sbjct: 232 SVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCG-AIDAAKRLF 290

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           ++   +N V + T+++ YA  G     L +  EML +G   +  +   A+ A A    + 
Sbjct: 291 DECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLF 350

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMY---------CR-FDCLSD-------------- 267
           +GK+ H  VI++G      + N I+DMY         CR FD +S+              
Sbjct: 351 YGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFI 410

Query: 268 -------ANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTS 319
                  A + F+++ E++ + WNT+I+G  +KS   + + +F +M+ E    +  T   
Sbjct: 411 RNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMG 470

Query: 320 IIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD 379
           I +AC  L A    + VH  I + G+  ++ L  AL+DM+A+CG+   + ++F++M++RD
Sbjct: 471 IASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERD 530

Query: 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439
           +  WT+ +      G+G+ A  LF++M+  GV+PD ++F+ VLTACSH G V++GL  F 
Sbjct: 531 VSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFS 590

Query: 440 SMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN 499
            M D+ ++P  E YGC+VDLLGRAG ++EA++LIKSMP +P++ VWG LL AC+ H+   
Sbjct: 591 LMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVE 650

Query: 500 LGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVR 559
           +   AA R+ +L P   G +++LSNIYA+ GKW + A+ R  +R  G +K  G S ++V 
Sbjct: 651 MATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVN 710

Query: 560 DKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
             +  F + D+      ++  +L+ +    ++  + PD+  ++ D++
Sbjct: 711 GVIHEFTSGDESHPEMTHIALMLQEMNCRFSDAGHIPDLSNVLLDVD 757



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 142/514 (27%), Positives = 241/514 (46%), Gaps = 40/514 (7%)

Query: 12  TFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDE 71
           +  C K    +KQ    + K+ +   P  + K   + A   I S        +A  LF E
Sbjct: 31  SLRCCKTLNQLKQLHCQITKNGLDQIPSTLTK--LVNAGAEIASPESLDYARKAFELFKE 88

Query: 72  MPERDVVSWTV--MIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLS 129
               D   + +  +I GY+S     +A  ++V M+   V PN +T   VL  C  + +  
Sbjct: 89  DVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFC 148

Query: 130 NAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGY 189
               VHG  +K GLE  ++++N L+  YA C   MD+   VF  M  +N VSWT+LI GY
Sbjct: 149 EGIQVHGSVVKMGLEEDVFIQNCLIHFYAECG-HMDHGHKVFEGMSERNVVSWTSLICGY 207

Query: 190 AHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNL 249
           A        + +F EM+  G+  +  +    + ACA    +  G+ + A + + G   N 
Sbjct: 208 ARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNK 267

Query: 250 PVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSE 308
            ++N+++DMY +   +  A + FDE  +++L+ +NTI++ Y + G + E L +  +M  +
Sbjct: 268 VMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQ 327

Query: 309 RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDS 368
              P+  T  S I+A A L  L  G+  H  ++R GL+G  ++ N +IDMY KCG    +
Sbjct: 328 GPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMA 387

Query: 369 QKIFSEMSDRDLVTWTSMMIGYGAHGHG-------------------------------K 397
            ++F  MS++ +V+W S+  G+  +G                                 +
Sbjct: 388 CRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFE 447

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP-NKEIYGCV 456
           +AIELF EM   G++ DR+  M + +AC + G   E  K+  +  + N  P +  +   +
Sbjct: 448 DAIELFREMQGEGIKADRVTMMGIASACGYLG-APELAKWVHTYIEKNGIPCDMRLNTAL 506

Query: 457 VDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490
           VD+  R G  + A ++   M  + D S W   +G
Sbjct: 507 VDMFARCGDPQSAMQVFNKMTER-DVSAWTAAIG 539



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 109/379 (28%), Positives = 187/379 (49%), Gaps = 23/379 (6%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI--SMDNARLVFN 172
           L+  L+ CK +  L     +H    K GL+        L++  A      S+D AR  F 
Sbjct: 28  LNESLRCCKTLNQLKQ---LHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFE 84

Query: 173 DMKWKNDVS-------WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
              +K DV          +LI GY+ +G G   + ++  ML+ GV  N Y+F   +  C 
Sbjct: 85  --LFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCT 142

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
                  G  +H +V+K G   ++ + N ++  Y     +   ++ F+ M+E+++++W +
Sbjct: 143 KIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTS 202

Query: 286 IIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I GY +     E +++F +M      P+  T   +I+ACA L  L  G++V A I   G
Sbjct: 203 LICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELG 262

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           L  N  + NAL+DMY KCG I  ++++F E  DR+LV + +++  Y   G  +EA+ + D
Sbjct: 263 LKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILD 322

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE----IYGCVVDLL 460
           EM++ G RPDR+  ++ ++A   A LVD  L Y K  + Y +    E    I   ++D+ 
Sbjct: 323 EMLQQGPRPDRVTMLSAISA--SAQLVD--LFYGKVCHGYVIRNGLEGWDSIGNVIIDMY 378

Query: 461 GRAGRVKEAYELIKSMPFK 479
            + G+ + A  +   M  K
Sbjct: 379 MKCGKPEMACRVFDLMSNK 397



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 113/240 (47%), Gaps = 2/240 (0%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
           +L   +   G +E A  +F+++PER+ V W  MI+G    +    A  +F EM    +  
Sbjct: 404 SLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKA 463

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           +  T+  +  AC  + +   A  VH    K G+   + +  +L+D++A C     +A  V
Sbjct: 464 DRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCG-DPQSAMQV 522

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           FN M  ++  +WT  I   A  GNG G  G+F +ML++GV+ +   F   + AC+  G V
Sbjct: 523 FNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQV 582

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLITWNTIIAG 289
             G  I + +  HG    +     ++D+  R   L +A      M  E + + W +++A 
Sbjct: 583 EQGLHIFSLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAA 642



 Score = 42.0 bits (97), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 56/141 (39%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L T L+  +   G  + A  +F++M ERDV +WT  I           A  +F +M+   
Sbjct: 502 LNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQG 561

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V P+      VL AC     +     +  +    G+   I     ++D+     +  +  
Sbjct: 562 VKPDVVLFVQVLTACSHGGQVEQGLHIFSLMEDHGISPQIEHYGCMVDLLGRAGLLREAF 621

Query: 168 RLVFNDMKWKNDVSWTTLITG 188
            L+ +     NDV W +L+  
Sbjct: 622 DLIKSMPMEPNDVVWGSLLAA 642


>gi|34365551|gb|AAQ65087.1| At4g14850 [Arabidopsis thaliana]
          Length = 634

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 185/550 (33%), Positives = 296/550 (53%), Gaps = 5/550 (0%)

Query: 63  EEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKAC 122
           E AR +    P R+VVSWT +I+G       + A   F EM R  V PN FT     KA 
Sbjct: 9   ESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAV 68

Query: 123 KGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSW 182
             ++       +H +A+K G    ++V  S  D+Y    +  D+AR +F+++  +N  +W
Sbjct: 69  ASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLR-DDARKLFDEIPERNLETW 127

Query: 183 TTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIK 242
              I+     G     +  F E        N  +F   + AC+    ++ G  +H  V++
Sbjct: 128 NAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLR 187

Query: 243 HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLN-M 301
            GF +++ V N ++D Y +   +  +   F EM  K+ ++W +++A Y ++   E  + +
Sbjct: 188 SGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVL 247

Query: 302 FSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK 361
           + + + +    + F  +S+++ACA +A L  G+ +HA  V+  ++  + + +AL+DMY K
Sbjct: 248 YLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGK 307

Query: 362 CGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV--RPDRIVFM 419
           CG I DS++ F EM +++LVT  S++ GY   G    A+ LF+EM   G    P+ + F+
Sbjct: 308 CGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFV 367

Query: 420 AVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPF 478
           ++L+ACS AG V+ G+K F SM   Y + P  E Y C+VD+LGRAG V+ AYE IK MP 
Sbjct: 368 SLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPI 427

Query: 479 KPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKF 538
           +P  SVWG L  AC+ H  P LG LAA  +  L P   G +++LSN +AA G+W E    
Sbjct: 428 QPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTV 487

Query: 539 RKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDI 598
           R+ ++G+G KK  G SWI V+++V  F A D+     + +   L  L   M    Y+PD+
Sbjct: 488 REELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDL 547

Query: 599 DCLIHDLEGE 608
              ++DLE E
Sbjct: 548 KLSLYDLEEE 557



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 172/344 (50%), Gaps = 6/344 (1%)

Query: 56  YFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTL 115
           Y    L ++AR LFDE+PER++ +W   I+   +     +A   F+E  R + +PN+ T 
Sbjct: 103 YCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITF 162

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMK 175
            + L AC     L+    +HG+ ++ G +  + V N L+D Y   C  + ++ ++F +M 
Sbjct: 163 CAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGK-CKQIRSSEIIFTEMG 221

Query: 176 WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKL 235
            KN VSW +L+  Y  +        ++     + VE + +  S  + ACA    +  G+ 
Sbjct: 222 TKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRS 281

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS 295
           IHA  +K      + V ++++DMY +  C+ D+ Q FDEM EK+L+T N++I GY   G 
Sbjct: 282 IHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQ 341

Query: 296 SE-CLNMFSKMKSERF--SPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-GLDGNLAL 351
            +  L +F +M       +PN  TF S+++AC+   A+  G ++   +    G++     
Sbjct: 342 VDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEH 401

Query: 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVT-WTSMMIGYGAHG 394
            + ++DM  + G +  + +   +M  +  ++ W ++      HG
Sbjct: 402 YSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHG 445



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 118/240 (49%), Gaps = 7/240 (2%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y     I  +  +F EM  ++ VSW  ++A Y   +   +A  +++   ++ V  +
Sbjct: 200 LIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETS 259

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNARLV 170
            F +SSVL AC GM  L     +H  A+K  +E +I+V ++L+D+Y  C CI  +++   
Sbjct: 260 DFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCI--EDSEQA 317

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP--YSFSIAVRACASTG 228
           F++M  KN V+  +LI GYAH G     L +F+EM   G    P   +F   + AC+  G
Sbjct: 318 FDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAG 377

Query: 229 WVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT-WNTI 286
            V  G K+  +    +G        + I+DM  R   +  A ++  +M  +  I+ W  +
Sbjct: 378 AVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGAL 437



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 2/235 (0%)

Query: 258 MYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFT 316
           MY + D    A         +++++W ++I+G  ++G  S  L  F +M+ E   PN FT
Sbjct: 1   MYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFT 60

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           F     A A+L     G+Q+HA  V+ G   ++ +  +  DMY K     D++K+F E+ 
Sbjct: 61  FPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIP 120

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
           +R+L TW + +      G  +EAIE F E  +    P+ I F A L ACS    ++ G++
Sbjct: 121 ERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQ 180

Query: 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
               +     + +  +   ++D  G+  +++ +  +   M  K   S W  L+ A
Sbjct: 181 LHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVS-WCSLVAA 234


>gi|357495605|ref|XP_003618091.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519426|gb|AET01050.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 192/560 (34%), Positives = 320/560 (57%), Gaps = 14/560 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + ++ I  + D G ++ AR +FD    ++   W  MI  Y   NC  +A  VF++ + +E
Sbjct: 260 VVSSAILMFSDVGCMDYARMVFDRCLNKNTEIWNTMIVAYVQNNCPVEAIDVFIQALESE 319

Query: 108 VNP-NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGS-IYVENSLMDVYATCCISMD 165
               +  TL SVL A   ++ +  A   H   IK  L GS I + N++M +Y+ C   +D
Sbjct: 320 EGVCDDVTLLSVLTAVSQLQQIKLAEQFHAFVIK-SLPGSLIIILNAVMVMYSRCN-HVD 377

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            +  VF+ M  ++ VSW T+I+ +  +G     L +  EM  +   ++  + +  + A +
Sbjct: 378 TSLKVFDKMLERDAVSWNTIISAFVQNGFDEEALMLVCEMQKQKFLIDSVTATALLSAAS 437

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNS-ILDMYCRFDCLSDANQYFDE--MTEKDLIT 282
           +   +  GK  HA +I+ G       M S ++DMY +   +  A   F++   +++D  T
Sbjct: 438 NLRNLYVGKQTHAYLIRRGI--QFEGMESYLIDMYAKSGSIRTAELLFEQNCSSDRDQAT 495

Query: 283 WNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           WN IIAGY ++G +E  + +  +M  +   PN  T  SI+ AC+++ ++   +Q+H   +
Sbjct: 496 WNAIIAGYTQNGLNEKAILLLKQMLVQNVIPNAVTLASILPACSSMGSMGLARQLHGFSI 555

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           RR L+ N+ +  +L D Y+KCG IS ++ +F    +++ VT+T+MM+ YG HG GK A+ 
Sbjct: 556 RRFLEKNVYVGTSLTDTYSKCGAISYAENVFLRTPEKNSVTYTTMMMCYGQHGMGKRALT 615

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLL 460
           L+D M++SG+RPD + F+A+L+AC+++GLVDEGL+ F+SM   + + P+ E Y CV D+L
Sbjct: 616 LYDSMLRSGIRPDAVTFVAILSACNYSGLVDEGLQIFESMEKVHKIKPSIEHYCCVADML 675

Query: 461 GRAGRVKEAYELIKSMPFKPDE-SVWGPLLGACKEHRLPNLGKLAALRVLD--LKPNMMG 517
           GR GRV EAYE +K +    +   +WG LLG+C+ H    LGK  A ++L+  +   M G
Sbjct: 676 GRVGRVVEAYEFVKGLGEDANTMEIWGSLLGSCRNHGHFELGKAVAKKLLNMGMDKRMAG 735

Query: 518 TYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQY 577
            +++LSNIYA EG+WE+  + RK M+  G  KE G SW+E+   V  F++ D+    +  
Sbjct: 736 YHVLLSNIYAEEGEWEKVDRVRKQMKEKGLHKETGCSWVEIAGFVNCFVSRDEKHPQSSE 795

Query: 578 VYGVLEMLIRHMNETAYEPD 597
           +Y +L+ML   M    Y+P 
Sbjct: 796 IYYMLDMLTLDMKYAGYKPQ 815



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/394 (29%), Positives = 206/394 (52%), Gaps = 12/394 (3%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           GPS +  N + + +     E A  +FD M  R+VV+W  +I  +   N + QA   F  M
Sbjct: 153 GPSRIVYNSLLNMYASCQHEYALNVFDVMRRRNVVAWNTLILSFVKMNRYPQAVEAFANM 212

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLE--GSIYVENSLMDVYATC- 160
           +   V P+  T  ++  A   +       + +G   K G +    ++V +S + +++   
Sbjct: 213 INQSVMPSPVTFVNLFPALSKLGDSRTVKMFYGFMRKFGDQYVSDVFVVSSAILMFSDVG 272

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEML--LEGVEMNPYSFS 218
           C  MD AR+VF+    KN   W T+I  Y  +      + VF + L   EGV  +    S
Sbjct: 273 C--MDYARMVFDRCLNKNTEIWNTMIVAYVQNNCPVEAIDVFIQALESEEGVCDDVTLLS 330

Query: 219 IAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK 278
           + + A +    +   +  HA VIK   GS + ++N+++ MY R + +  + + FD+M E+
Sbjct: 331 V-LTAVSQLQQIKLAEQFHAFVIKSLPGSLIIILNAVMVMYSRCNHVDTSLKVFDKMLER 389

Query: 279 DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
           D ++WNTII+ + ++G   E L +  +M+ ++F  +  T T++++A + L  L  G+Q H
Sbjct: 390 DAVSWNTIISAFVQNGFDEEALMLVCEMQKQKFLIDSVTATALLSAASNLRNLYVGKQTH 449

Query: 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSE--MSDRDLVTWTSMMIGYGAHGH 395
           A ++RRG+     + + LIDMYAK G+I  ++ +F +   SDRD  TW +++ GY  +G 
Sbjct: 450 AYLIRRGIQFE-GMESYLIDMYAKSGSIRTAELLFEQNCSSDRDQATWNAIIAGYTQNGL 508

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
            ++AI L  +M+   V P+ +   ++L ACS  G
Sbjct: 509 NEKAILLLKQMLVQNVIPNAVTLASILPACSSMG 542



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 136/537 (25%), Positives = 247/537 (45%), Gaps = 46/537 (8%)

Query: 59  EGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV--NPNAFTLS 116
           EG    A  L D +P    V W  +I G+   N  +QA  ++ +M  N      + +T S
Sbjct: 62  EGQPHLALHLLDSLPRPSTVVWNSVIIGFICNNLPHQALLLYAKMRSNSSCSTFDPYTFS 121

Query: 117 SVLKACKGMKSLSNAALVHGMAIKE----GLEGSIYVENSLMDVYATCCISMDNARLVFN 172
           S LKAC   K +     +H   ++         S  V NSL+++YA+C    + A  VF+
Sbjct: 122 STLKACALTKDILTGKAIHSHFLRSHSNTNTGPSRIVYNSLLNMYASC--QHEYALNVFD 179

Query: 173 DMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSF 232
            M+ +N V+W TLI  +         +  F  M+ + V  +P +F     A +  G    
Sbjct: 180 VMRRRNVVAWNTLILSFVKMNRYPQAVEAFANMINQSVMPSPVTFVNLFPALSKLGDSRT 239

Query: 233 GKLIHAAVIKHG--FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
            K+ +  + K G  + S++ V++S + M+    C+  A   FD    K+   WNT+I  Y
Sbjct: 240 VKMFYGFMRKFGDQYVSDVFVVSSAILMFSDVGCMDYARMVFDRCLNKNTEIWNTMIVAY 299

Query: 291 EKSGSS-ECLNMF-SKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
            ++    E +++F   ++SE    +  T  S++ A + L  +   +Q HA ++ + L G+
Sbjct: 300 VQNNCPVEAIDVFIQALESEEGVCDDVTLLSVLTAVSQLQQIKLAEQFHAFVI-KSLPGS 358

Query: 349 LALA-NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           L +  NA++ MY++C ++  S K+F +M +RD V+W +++  +  +G  +EA+ L  EM 
Sbjct: 359 LIIILNAVMVMYSRCNHVDTSLKVFDKMLERDAVSWNTIISAFVQNGFDEEALMLVCEMQ 418

Query: 408 KSGVRPDRIVFMAVLTACS-----------HAGLVDEGLKYFKSMNDYNVNPNKEIYGCV 456
           K     D +   A+L+A S           HA L+  G++ F+ M  Y           +
Sbjct: 419 KQKFLIDSVTATALLSAASNLRNLYVGKQTHAYLIRRGIQ-FEGMESY-----------L 466

Query: 457 VDLLGRAGRVKEAYELI-KSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM 515
           +D+  ++G ++ A  L  ++     D++ W  ++    ++ L N   +  L+ + L  N+
Sbjct: 467 IDMYAKSGSIRTAELLFEQNCSSDRDQATWNAIIAGYTQNGL-NEKAILLLKQM-LVQNV 524

Query: 516 MGTYIILSNIYAAEGKWEEFAKFRK-----IMRGMGSKKEVGMSWIEVRDKVCGFIA 567
           +   + L++I  A          R+     I R +     VG S  +   K CG I+
Sbjct: 525 IPNAVTLASILPACSSMGSMGLARQLHGFSIRRFLEKNVYVGTSLTDTYSK-CGAIS 580



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 12/187 (6%)

Query: 252 MNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE-KSGSSECLNMFSKMKSER- 309
           + S L   CR      A    D +     + WN++I G+   +   + L +++KM+S   
Sbjct: 52  IRSRLSKLCREGQPHLALHLLDSLPRPSTVVWNSVIIGFICNNLPHQALLLYAKMRSNSS 111

Query: 310 ---FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA----LANALIDMYAKC 362
              F P  +TF+S + ACA    +  G+ +H+  +R   + N      + N+L++MYA C
Sbjct: 112 CSTFDP--YTFSSTLKACALTKDILTGKAIHSHFLRSHSNTNTGPSRIVYNSLLNMYASC 169

Query: 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
            +   +  +F  M  R++V W ++++ +       +A+E F  M+   V P  + F+ + 
Sbjct: 170 QH-EYALNVFDVMRRRNVVAWNTLILSFVKMNRYPQAVEAFANMINQSVMPSPVTFVNLF 228

Query: 423 TACSHAG 429
            A S  G
Sbjct: 229 PALSKLG 235


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 192/520 (36%), Positives = 298/520 (57%), Gaps = 18/520 (3%)

Query: 105 RNEVNPNAFTLS----------SVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLM 154
           R   N N F LS          S++ A     S+S  + +H   IK       ++ + L+
Sbjct: 45  RRICNANLFQLSPPFQVYSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLV 104

Query: 155 DVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGG--LGVFKEMLLE-GVE 211
            +Y       D  RL F++M  K+ VSW +L++G   SG GY G  L  F  M  E G +
Sbjct: 105 SMYFKLGYDEDAQRL-FDEMPNKDLVSWNSLMSGL--SGRGYLGACLNAFCRMRTESGRQ 161

Query: 212 MNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQY 271
            N  +    V ACA  G +  GK +H  V+K G      V+NS+++MY +   L  A+Q 
Sbjct: 162 PNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQL 221

Query: 272 FDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAAL 330
           F+EM  + L++WN+++  +  +G +E  +++F+ MK    +P+  T  +++ AC      
Sbjct: 222 FEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLG 281

Query: 331 SCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY 390
              + +HA I R G + ++ +A AL+++YAK G ++ S+ IF E+ DRD + WT+M+ GY
Sbjct: 282 RQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGY 341

Query: 391 GAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPN 449
             H  G+EAI+LFD MVK GV  D + F  +L+ACSH+GLV+EG KYF+ M++ Y V P 
Sbjct: 342 AVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPR 401

Query: 450 KEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVL 509
            + Y C+VDLLGR+GR+++AYELIKSMP +P   VWG LLGAC+ +    LGK  A ++L
Sbjct: 402 LDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLL 461

Query: 510 DLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIAND 569
            L P+    YI+LSNIY+A G W + +K R +M+     +  G S+IE  +K+  F+  D
Sbjct: 462 SLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGD 521

Query: 570 KMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGET 609
           ++   +  ++  LE LIR + E    P  + ++HD++ E 
Sbjct: 522 QLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEEV 561



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 169/343 (49%), Gaps = 28/343 (8%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +   L+  YF  G  E+A+ LFDEMP +D+VSW  +++G +           F  M R E
Sbjct: 99  IGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRM-RTE 157

Query: 108 V--NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
               PN  TL SV+ AC  M +L     +HG+ +K G+ G   V NSL+++Y      +D
Sbjct: 158 SGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGF-LD 216

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A  +F +M  ++ VSW +++  + H+G    G+ +F  M   G+  +  +    +RAC 
Sbjct: 217 AASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACT 276

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
            TG     + IHA + + GF +++ +  ++L++Y +   L+ +   F+E+ ++D I W  
Sbjct: 277 DTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTA 336

Query: 286 IIAGYE-KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           ++AGY   +   E + +F  M  E    +  TFT +++AC+           H+G+V  G
Sbjct: 337 MLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACS-----------HSGLVEEG 385

Query: 345 ------------LDGNLALANALIDMYAKCGNISDSQKIFSEM 375
                       ++  L   + ++D+  + G + D+ ++   M
Sbjct: 386 KKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSM 428



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 154/342 (45%), Gaps = 44/342 (12%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G + +  +LI  Y   G ++ A  LF+EMP R +VSW  M+  +       +   +F  M
Sbjct: 197 GKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLM 256

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
            R  +NP+  T+ ++L+AC        A  +H    + G    I +  +L+++YA     
Sbjct: 257 KRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLG-R 315

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           ++ +  +F ++K ++ ++WT ++ GYA    G   + +F  M+ EGVE++  +F+  + A
Sbjct: 316 LNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSA 375

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C+ +G V  GK                +M+ +  +  R D                   +
Sbjct: 376 CSHSGLVEEGK------------KYFEIMSEVYRVEPRLD------------------HY 405

Query: 284 NTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           + ++    +SG  E  + +  +KS    P+   + +++ AC     +  G++V   ++  
Sbjct: 406 SCMVDLLGRSGRLE--DAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLL-- 461

Query: 344 GLDGN-----LALANALIDMYAKCGNISDSQKIFSEMSDRDL 380
            LD +     + L+N    +Y+  G   D+ K+ + M +R L
Sbjct: 462 SLDPSDHRNYIMLSN----IYSAAGLWRDASKVRALMKERRL 499


>gi|356525712|ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 691

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 176/522 (33%), Positives = 300/522 (57%), Gaps = 5/522 (0%)

Query: 91  NCHNQAWTVF--VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIY 148
           N H +A  +F  +E+  +     A T  +++ AC G++S+     V    I  G E  +Y
Sbjct: 95  NRHREAMELFEILELEHDGYGVGASTYDALVSACVGLRSIRGVKRVFNYMINSGFEPDLY 154

Query: 149 VENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE 208
           V N ++ ++  C + +D AR +F++M  K+  SW T++ G   +GN      +F  M  E
Sbjct: 155 VMNRVLFMHVKCGLMLD-ARKLFDEMPEKDVASWMTMVGGLVDTGNFSEAFRLFLCMWKE 213

Query: 209 GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDA 268
             +    +F+  +RA A  G V  GK IH+  +K G G +  V  +++DMY +   + DA
Sbjct: 214 FNDGRSRTFATMIRASAGLGLVQVGKQIHSCALKRGVGDDHFVSCALIDMYSKCGSIEDA 273

Query: 269 NQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATL 327
           +  FD+M EK  + WN+IIA Y   G S E L+++ +M+    + + FT + +I  CA L
Sbjct: 274 HCVFDQMPEKTTVGWNSIIASYALHGYSEEALSLYFEMRDSGTTVDHFTISIVIRICARL 333

Query: 328 AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMM 387
           A+L   +Q HA +VR G   ++    AL+D Y+K G + D++ +F+ M  +++++W +++
Sbjct: 334 ASLEHAKQAHAALVRHGFATDIVANTALVDFYSKWGRMEDARHVFNRMRHKNVISWNALI 393

Query: 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNV 446
            GYG HG G+EA+E+F++M++ GV P  + F+AVL+ACS++GL   G + F SM  D+ V
Sbjct: 394 AGYGNHGQGQEAVEMFEQMLQEGVTPTHVTFLAVLSACSYSGLSQRGWEIFYSMKRDHKV 453

Query: 447 NPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAAL 506
            P    Y C+++LLGR   + EAY LI++ PFKP  ++W  LL AC+ H+   LGKLAA 
Sbjct: 454 KPRAMHYACMIELLGRESLLDEAYALIRTAPFKPTANMWAALLTACRMHKNLELGKLAAE 513

Query: 507 RVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFI 566
           ++  ++P  +  YI+L N+Y + GK +E A   + ++  G +     SW+EV+ +   F+
Sbjct: 514 KLYGMEPEKLCNYIVLLNLYNSSGKLKEAAGILQTLKKKGLRMLPACSWVEVKKQPYAFL 573

Query: 567 ANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
             DK  S T+ +Y  ++ L+  + +  Y  + + L+ D++ E
Sbjct: 574 CGDKSHSQTKEIYQKVDNLMVEICKHGYAEENETLLPDVDEE 615



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/425 (27%), Positives = 210/425 (49%), Gaps = 44/425 (10%)

Query: 60  GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119
           GL+ +AR LFDEMPE+DV SW  M+ G       ++A+ +F+ M +   +  + T ++++
Sbjct: 167 GLMLDARKLFDEMPEKDVASWMTMVGGLVDTGNFSEAFRLFLCMWKEFNDGRSRTFATMI 226

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179
           +A  G+  +     +H  A+K G+    +V  +L+D+Y+ C  S+++A  VF+ M  K  
Sbjct: 227 RASAGLGLVQVGKQIHSCALKRGVGDDHFVSCALIDMYSKCG-SIEDAHCVFDQMPEKTT 285

Query: 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAA 239
           V W ++I  YA  G     L ++ EM   G  ++ ++ SI +R CA    +   K  HAA
Sbjct: 286 VGWNSIIASYALHGYSEEALSLYFEMRDSGTTVDHFTISIVIRICARLASLEHAKQAHAA 345

Query: 240 VIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SEC 298
           +++HGF +++    +++D Y ++  + DA   F+ M  K++I+WN +IAGY   G   E 
Sbjct: 346 LVRHGFATDIVANTALVDFYSKWGRMEDARHVFNRMRHKNVISWNALIAGYGNHGQGQEA 405

Query: 299 LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDM 358
           + MF +M  E  +P   TF ++++AC+           ++G+ +RG +            
Sbjct: 406 VEMFEQMLQEGVTPTHVTFLAVLSACS-----------YSGLSQRGWE------------ 442

Query: 359 YAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI--ELFDEMVKSGVRPDRI 416
                       IF  M     V   +M         G+E++  E +  +  +  +P   
Sbjct: 443 ------------IFYSMKRDHKVKPRAMHYACMIELLGRESLLDEAYALIRTAPFKPTAN 490

Query: 417 VFMAVLTACS-HAGLVDEGLKYFKSMNDYNVNPNKEI-YGCVVDLLGRAGRVKEAYELIK 474
           ++ A+LTAC  H  L    L    +   Y + P K   Y  +++L   +G++KEA  +++
Sbjct: 491 MWAALLTACRMHKNL---ELGKLAAEKLYGMEPEKLCNYIVLLNLYNSSGKLKEAAGILQ 547

Query: 475 SMPFK 479
           ++  K
Sbjct: 548 TLKKK 552



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 96/182 (52%), Gaps = 1/182 (0%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y   G IE+A  +FD+MPE+  V W  +IA Y       +A +++ EM  +    +
Sbjct: 260 LIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEEALSLYFEMRDSGTTVD 319

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
            FT+S V++ C  + SL +A   H   ++ G    I    +L+D Y+     M++AR VF
Sbjct: 320 HFTISIVIRICARLASLEHAKQAHAALVRHGFATDIVANTALVDFYSKWG-RMEDARHVF 378

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           N M+ KN +SW  LI GY + G G   + +F++ML EGV     +F   + AC+ +G   
Sbjct: 379 NRMRHKNVISWNALIAGYGNHGQGQEAVEMFEQMLQEGVTPTHVTFLAVLSACSYSGLSQ 438

Query: 232 FG 233
            G
Sbjct: 439 RG 440



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 42/73 (57%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T L+  Y   G +E+AR +F+ M  ++V+SW  +IAGY +     +A  +F +M++  V 
Sbjct: 359 TALVDFYSKWGRMEDARHVFNRMRHKNVISWNALIAGYGNHGQGQEAVEMFEQMLQEGVT 418

Query: 110 PNAFTLSSVLKAC 122
           P   T  +VL AC
Sbjct: 419 PTHVTFLAVLSAC 431


>gi|217426788|gb|ACK44496.1| AT5G09950-like protein [Arabidopsis arenosa]
          Length = 772

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 199/571 (34%), Positives = 310/571 (54%), Gaps = 12/571 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +   L+  Y   G I +AR +F  M E+D VSW  MI G     C  +A   +  M R+E
Sbjct: 71  IGNGLVNMYAKCGSIADARRVFCFMMEKDSVSWNSMITGLDQNGCFIEAVERYQSMRRHE 130

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + P +FTL S L +C  +K       +HG ++K G++ ++ V N+LM +YA     ++  
Sbjct: 131 ILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGY-LNEC 189

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYG-GLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           R +F+ M   + VSW ++I   A S       +  F   L  G ++N  +FS  + A +S
Sbjct: 190 RKIFSSMPEHDQVSWNSIIGALASSERSLPEAVACFLNALRAGQKLNRITFSSVLSAVSS 249

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLITWNT 285
             +   GK IH   +K+         N+++  Y +   +    + F  M+E+ D +TWN+
Sbjct: 250 LSFGELGKQIHGLALKYNIADEATTENALIACYGKCGEMDGCEKIFSRMSERRDDVTWNS 309

Query: 286 IIAGY---EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           +I+GY   E    +  L  F     +R   + F + ++++A A++A L  G +VHA  VR
Sbjct: 310 MISGYIHNELLAKALDLVWFMLQTGQRL--DSFMYATVLSAFASVATLERGMEVHACSVR 367

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
             L+ ++ + +AL+DMY+KCG +  + + F+ M  R+  +W SM+ GY  HG G+EA++L
Sbjct: 368 ACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKL 427

Query: 403 FDEMVKSG-VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLL 460
           F  M   G   PD + F+ VL+ACSHAGL++EG K+F+SM+D Y + P  E + C+ DLL
Sbjct: 428 FANMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADLL 487

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGAC--KEHRLPNLGKLAALRVLDLKPNMMGT 518
           GRAG + +  + I  MP KP+  +W  +LGAC     R   LGK AA  +  L+P     
Sbjct: 488 GRAGELDKLEDFIDKMPVKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVN 547

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
           Y++L N+YAA G+WE+  K RK M+    KKE G SW+ ++D V  F+A DK    T  +
Sbjct: 548 YVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDTDVI 607

Query: 579 YGVLEMLIRHMNETAYEPDIDCLIHDLEGET 609
           Y  L+ L R M +  Y P     ++DLE E 
Sbjct: 608 YKKLKELNRKMRDAGYVPQTGFALYDLEQEN 638



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 90/177 (50%), Gaps = 4/177 (2%)

Query: 325 ATLAALSCGQQVHAGIVRRGL-DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTW 383
           A    L  G++VH  ++  GL D  + + N L++MYAKCG+I+D++++F  M ++D V+W
Sbjct: 44  AEQVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFCFMMEKDSVSW 103

Query: 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND 443
            SM+ G   +G   EA+E +  M +  + P     ++ L++C+       G +       
Sbjct: 104 NSMITGLDQNGCFIEAVERYQSMRRHEILPGSFTLISSLSSCASLKWAKLGQQIHGESLK 163

Query: 444 YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG--ACKEHRLP 498
             ++ N  +   ++ L    G + E  ++  SMP + D+  W  ++G  A  E  LP
Sbjct: 164 LGIDLNVSVSNALMTLYAETGYLNECRKIFSSMP-EHDQVSWNSIIGALASSERSLP 219



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 8/102 (7%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM-VR 105
           ++ + L+  Y   G ++ A   F+ MP R+  SW  MI+GY       +A  +F  M + 
Sbjct: 375 VVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFANMKLD 434

Query: 106 NEVNPNAFTLSSVLKAC-------KGMKSLSNAALVHGMAIK 140
            +  P+  T   VL AC       +G K   + +  +G+A +
Sbjct: 435 GQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPR 476


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 188/556 (33%), Positives = 310/556 (55%), Gaps = 9/556 (1%)

Query: 46   SILATNLIKSYFDEGLIEEARTLFDEMP--ERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
            S +AT L+  Y   G I EA  +F EMP   R +V+W VM+  Y   +   +A+   +EM
Sbjct: 473  SSVATMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEM 532

Query: 104  VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
            ++  V P+A + +SVL +C      S  A V  M I E    S  +E +L+ ++  C   
Sbjct: 533  LQGGVLPDALSFTSVLSSCY----CSQEAQVLRMCILESGYRSACLETALISMHGRC-RE 587

Query: 164  MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
            ++ AR VFN+M   + VSWT +++  A + +      +F+ M LEGV  + ++ +  +  
Sbjct: 588  LEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLDT 647

Query: 224  CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
            C ++  +  GK+IHA V + G  +++ V N++L+MY       +A  +F+ M  +DL++W
Sbjct: 648  CLASTTLGLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSW 707

Query: 284  NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
            N + A Y ++G + E + +F +M+ E   P+  TF++ +      A +S G+  HA    
Sbjct: 708  NIMSAAYAQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHALAAE 767

Query: 343  RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
             GLD ++++A  L+ +YAKCG + ++  +F    D  +V   +++     HG  +EA+++
Sbjct: 768  SGLDSDVSVATGLVKLYAKCGKLDEAMSLFRGACDWTVVLLNAIIGALAQHGFSEEAVKM 827

Query: 403  FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDY-NVNPNKEIYGCVVDLLG 461
            F +M + GVRPD    +++++AC HAG+V+EG   F +M +Y  ++P  E Y C VDLLG
Sbjct: 828  FWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLG 887

Query: 462  RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
            RAG+++ A ++I+ MPF+ +  VW  LLG CK      LG+  A R+L+L P+    +++
Sbjct: 888  RAGQLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHVV 947

Query: 522  LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGV 581
            LSNIY A GKW++    RK M     K   GMSW E+  +V  F+A D+    T  +Y V
Sbjct: 948  LSNIYCATGKWKDADVDRKKMLDENVKNAPGMSWFEIGKQVHEFVAGDRSHPKTDEIYVV 1007

Query: 582  LEMLIRHMNETAYEPD 597
            L+ L   M    YE D
Sbjct: 1008 LDKLELLMRRAGYEAD 1023



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 139/502 (27%), Positives = 246/502 (49%), Gaps = 28/502 (5%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM-VRN 106
           L   LI  Y   G +EEA  +F +M ER+VVSWT +I+         +A+ +F  M + +
Sbjct: 62  LGNCLINMYVRCGSLEEAHAIFSKMEERNVVSWTALISANAQCGAFARAFALFRTMLLES 121

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLE----GSIYVENSLMDVYATCCI 162
              PN++TL ++L AC   + L+    +H M  + GLE     +  V N+++++YA C  
Sbjct: 122 SAAPNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERASTTATLVGNAMINMYAKCG- 180

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGY-GGLGVFKEMLLEGVEMNPYSFSIAV 221
           S+++A  VF  +  K+ VSWT +   YA     Y   L +F+EMLL+ +  N  +F  A+
Sbjct: 181 SLEDAIAVFLAIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITAL 240

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT---EK 278
            AC S   +  G  +H+ + +   G +    N++++MY +      A   F  M    E 
Sbjct: 241 GACTS---LRDGTWLHSLLHEASLGFDPLASNALINMYGKCGDWEGAYSVFKAMASRQEL 297

Query: 279 DLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAA-LSCGQQV 336
           DL++WN +I+   ++G   + + +F +++ E   PN  T  +I+ A A         +  
Sbjct: 298 DLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASGVDFGAARGF 357

Query: 337 HAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHGH 395
           H  I   G   ++ + NA+I MYAKCG  S +  +F  +  + D+++W +M+        
Sbjct: 358 HGRIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVISWNTMLGASEDRKS 417

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK----YFKSMNDYNVNPNKE 451
             + +  F  M+ +G+ P+++ F+A+L ACS++  +D G K          DY       
Sbjct: 418 FGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDY---VESS 474

Query: 452 IYGCVVDLLGRAGRVKEAYELIKSMPFKPDESV--WGPLLGACKEHRLPN--LGKLAALR 507
           +   +V + G+ G + EA  + K MP  P  S+  W  +LGA  ++       G L  + 
Sbjct: 475 VATMLVSMYGKCGSISEAELVFKEMPL-PSRSLVTWNVMLGAYAQNDRSKEAFGALMEML 533

Query: 508 VLDLKPNMMGTYIILSNIYAAE 529
              + P+ +    +LS+ Y ++
Sbjct: 534 QGGVLPDALSFTSVLSSCYCSQ 555



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 146/546 (26%), Positives = 246/546 (45%), Gaps = 57/546 (10%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTS-FNCHNQAWTVFVEMV 104
           +++   +I  Y   G +E+A  +F  +PE+DVVSWT M   Y      +  A  +F EM+
Sbjct: 166 TLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAGAYAQERRFYPDALRIFREML 225

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
              + PN  T  + L AC    SL +   +H +  +  L       N+L+++Y  C    
Sbjct: 226 LQPLAPNVITFITALGAC---TSLRDGTWLHSLLHEASLGFDPLASNALINMYGKCG-DW 281

Query: 165 DNARLVFNDMKWKND---VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
           + A  VF  M  + +   VSW  +I+    +G     + +F+ + LEG+  N  +    +
Sbjct: 282 EGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITIL 341

Query: 222 RACASTGWVSFG--KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK- 278
            A A++G V FG  +  H  + + G+  ++ + N+I+ MY +    S A   F  +  K 
Sbjct: 342 NALAASG-VDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKC 400

Query: 279 DLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
           D+I+WNT++   E   S  + +N F  M      PN  +F +I+ AC+   AL  G+++H
Sbjct: 401 DVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIH 460

Query: 338 AGIVRRGLD-GNLALANALIDMYAKCGNISDSQKIFSEM--SDRDLVTWTSMMIGYGAHG 394
           + I+ R  D    ++A  L+ MY KCG+IS+++ +F EM    R LVTW  M+  Y  + 
Sbjct: 461 SLILTRRRDYVESSVATMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGAYAQND 520

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVL----------------------TACSHAGLV- 431
             KEA     EM++ GV PD + F +VL                      +AC    L+ 
Sbjct: 521 RSKEAFGALMEMLQGGVLPDALSFTSVLSSCYCSQEAQVLRMCILESGYRSACLETALIS 580

Query: 432 --------DEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK---P 480
                   ++    F  M+  +V      +  +V         KE + L + M  +   P
Sbjct: 581 MHGRCRELEQARSVFNEMDHGDVVS----WTAMVSATAENRDFKEVHNLFRRMQLEGVIP 636

Query: 481 DESVWGPLLGACKEHRLPNLGKL--AALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKF 538
           D+      L  C       LGK+  A +  + L+ ++     +L N+Y+  G W E   F
Sbjct: 637 DKFTLATTLDTCLASTTLGLGKVIHACVTEIGLEADIAVENALL-NMYSNCGDWREALSF 695

Query: 539 RKIMRG 544
            + M+ 
Sbjct: 696 FETMKA 701



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 196/393 (49%), Gaps = 17/393 (4%)

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMK 175
           +++L++C     L+     H +    GLE  +++ N L+++Y  C  S++ A  +F+ M+
Sbjct: 29  TALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCG-SLEEAHAIFSKME 87

Query: 176 WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAVRACASTGWVSFGK 234
            +N VSWT LI+  A  G       +F+ MLLE     N Y+    + ACA++  ++ G+
Sbjct: 88  ERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGR 147

Query: 235 LIHAAVIKHGF----GSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
            IHA + + G      +   V N++++MY +   L DA   F  + EKD+++W  +   Y
Sbjct: 148 SIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAGAY 207

Query: 291 --EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
             E+    + L +F +M  +  +PN  TF + + AC +L     G  +H+ +    L  +
Sbjct: 208 AQERRFYPDALRIFREMLLQPLAPNVITFITALGACTSLRD---GTWLHSLLHEASLGFD 264

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDR---DLVTWTSMMIGYGAHGHGKEAIELFDE 405
              +NALI+MY KCG+   +  +F  M+ R   DLV+W +M+      G   +A+ +F  
Sbjct: 265 PLASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRR 324

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLK--YFKSMNDYNVNPNKEIYGCVVDLLGRA 463
           +   G+RP+ +  + +L A + +G VD G    +   + +     +  I   ++ +  + 
Sbjct: 325 LRLEGMRPNSVTLITILNALAASG-VDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKC 383

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHR 496
           G    A+ + + + +K D   W  +LGA ++ +
Sbjct: 384 GFFSAAWAVFRRIRWKCDVISWNTMLGASEDRK 416



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 165/325 (50%), Gaps = 15/325 (4%)

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
           ++  +++C  +  ++ GK  H  +   G   +L + N +++MY R   L +A+  F +M 
Sbjct: 28  YTALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKME 87

Query: 277 EKDLITWNTIIAGYEKSGS-SECLNMFSKMKSE-RFSPNCFTFTSIIAACATLAALSCGQ 334
           E+++++W  +I+   + G+ +    +F  M  E   +PN +T  +++ ACA    L+ G+
Sbjct: 88  ERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGR 147

Query: 335 QVHAGIVRRGLDGNLALA----NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY 390
            +HA I   GL+     A    NA+I+MYAKCG++ D+  +F  + ++D+V+WT+M   Y
Sbjct: 148 SIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAGAY 207

Query: 391 GAHGHG-KEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN 449
                   +A+ +F EM+   + P+ I F+  L AC+    + +G      +++ ++  +
Sbjct: 208 AQERRFYPDALRIFREMLLQPLAPNVITFITALGACTS---LRDGTWLHSLLHEASLGFD 264

Query: 450 KEIYGCVVDLLGRAGRVKEAYELIKSMPFKP--DESVWGPLLGACKE--HRLPNLGKLAA 505
                 ++++ G+ G  + AY + K+M  +   D   W  ++ A  E       +     
Sbjct: 265 PLASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRR 324

Query: 506 LRVLDLKPNMMGTYIILSNIYAAEG 530
           LR+  ++PN + T I + N  AA G
Sbjct: 325 LRLEGMRPNSV-TLITILNALAASG 348


>gi|326487167|dbj|BAJ89568.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 691

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 190/563 (33%), Positives = 308/563 (54%), Gaps = 12/563 (2%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G + + + L++ Y   G    A  +   M   DVV++T +++          A     +M
Sbjct: 130 GDAWVGSCLVELYARCGSTRAAEAVLARMESPDVVAYTSLVSALCRSGEFGMAAEALGQM 189

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKE-GLEGSIYVENSLMDVYATCCI 162
           + + V PN  T++S+L AC     L     +HG  IK  G   S+Y  ++L+D Y+    
Sbjct: 190 MGHGVMPNEHTVTSILAACC---PLVLGVQIHGYMIKAMGFSQSVYTSSTLVDFYSRNG- 245

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGV-EMNPYSFSIAV 221
             D A+ VF++++ KN V+W T++  +   G     L +F EM+ EGV   N ++FSIA+
Sbjct: 246 EFDMAKTVFDNLQCKNVVTWCTMMQLHIRDGRPEDALQLFDEMISEGVVSPNEFAFSIAL 305

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
            AC S   ++ G  +H+  IKHG  S+L V N++L MY R   +      F  + + D++
Sbjct: 306 GACES---IALGSQLHSLAIKHGLASHLRVSNALLSMYGRIGLVQQLEAMFRGIEDPDIV 362

Query: 282 TWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           +W   I+ Y ++G  E  + + S+M S+  +PN + F+S++++CA LA L  G+Q H   
Sbjct: 363 SWTAAISAYFQNGHGEKAIALLSRMHSQGLTPNDYAFSSVLSSCADLALLDQGRQFHCLA 422

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           ++ G D      NALI+MY+KCG I  ++  F  M  RD+ +W S++ G+  HG     +
Sbjct: 423 LKLGCDVKTCTGNALINMYSKCGQIVPARLAFDIMDHRDVTSWNSLIHGHAQHGEVDMVL 482

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS--MNDYNVNPNKEIYGCVVD 458
           + F EM  +G  P+    + VL AC+HAGLVDEG+ +F+S     Y        Y C+VD
Sbjct: 483 KAFSEMCSNGGEPNESTLLGVLAACNHAGLVDEGVAFFRSAMAGLYGTFLTPPHYACMVD 542

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518
           +LGR+GR  +A  LI+ MPF+P   VW  LL +C+ H     G+LAA ++++L      +
Sbjct: 543 MLGRSGRFDDALCLIEEMPFEPGVLVWKTLLASCRLHGNLETGRLAAEKLVELSDQDSAS 602

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
           Y+++S I+A  G+W +    R+ M   G +KE G SW+EVR++V  F+A D     +  +
Sbjct: 603 YVLMSGIHAMHGEWRDADMVRRRMDEAGVRKEAGRSWVEVRNEVHTFVAQDVSHPDSPSI 662

Query: 579 YGVLEMLIRHMNETAYEPDIDCL 601
           Y +L  L   M +TAY+ D++ L
Sbjct: 663 YRMLWELSDAMRDTAYDEDVELL 685



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 122/441 (27%), Positives = 220/441 (49%), Gaps = 13/441 (2%)

Query: 60  GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119
           G + +A  LFD MP ++VV+WT  ++G T       A  +F +MV + V  N F  ++ L
Sbjct: 43  GRVADALDLFDRMPRKNVVAWTSAVSGLTRNGRPEAAGEMFADMVESGVALNDFACNAAL 102

Query: 120 KACKGMKSLS--NAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK 177
            AC      +      VH +A++ G  G  +V + L+++YA C  S   A  V   M+  
Sbjct: 103 AACAAAGPGALRTGEQVHSLAVRAGFVGDAWVGSCLVELYARCG-STRAAEAVLARMESP 161

Query: 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIH 237
           + V++T+L++    SG          +M+  GV  N ++ +  + AC     +  G  IH
Sbjct: 162 DVVAYTSLVSALCRSGEFGMAAEALGQMMGHGVMPNEHTVTSILAACCP---LVLGVQIH 218

Query: 238 AAVIKH-GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS 296
             +IK  GF  ++   ++++D Y R      A   FD +  K+++TW T++  + + G  
Sbjct: 219 GYMIKAMGFSQSVYTSSTLVDFYSRNGEFDMAKTVFDNLQCKNVVTWCTMMQLHIRDGRP 278

Query: 297 E-CLNMFSKMKSER-FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
           E  L +F +M SE   SPN F F+  + AC ++A    G Q+H+  ++ GL  +L ++NA
Sbjct: 279 EDALQLFDEMISEGVVSPNEFAFSIALGACESIA---LGSQLHSLAIKHGLASHLRVSNA 335

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
           L+ MY + G +   + +F  + D D+V+WT+ +  Y  +GHG++AI L   M   G+ P+
Sbjct: 336 LLSMYGRIGLVQQLEAMFRGIEDPDIVSWTAAISAYFQNGHGEKAIALLSRMHSQGLTPN 395

Query: 415 RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
              F +VL++C+   L+D+G ++         +        ++++  + G++  A     
Sbjct: 396 DYAFSSVLSSCADLALLDQGRQFHCLALKLGCDVKTCTGNALINMYSKCGQIVPARLAFD 455

Query: 475 SMPFKPDESVWGPLLGACKEH 495
            M  + D + W  L+    +H
Sbjct: 456 IMDHR-DVTSWNSLIHGHAQH 475



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 34/56 (60%)

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411
           +D   K G ++D+  +F  M  +++V WTS + G   +G  + A E+F +MV+SGV
Sbjct: 36  LDGLMKAGRVADALDLFDRMPRKNVVAWTSAVSGLTRNGRPEAAGEMFADMVESGV 91


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 197/599 (32%), Positives = 315/599 (52%), Gaps = 50/599 (8%)

Query: 47  ILATNLIKSYF-DEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           ++ T+++  Y  D   ++ A   FD M ER+  +W+ MIA  +     + A  V+    R
Sbjct: 259 VIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYG---R 315

Query: 106 NEVN--PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVE-NSLMDVYATCCI 162
           + V   P+   L + L  C          +     + E +   I V  N+++  Y    +
Sbjct: 316 DPVKSIPSQTALLTGLARC--------GRITEARILFEQIPDPIVVSWNAMITGYMQNGM 367

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            +D A+ +F+ M ++N +SW  +I GYA +G     L + + +   G+  +  S + +  
Sbjct: 368 -VDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFL 426

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMY--CRF------------------ 262
           AC+  G +  G+ +H+  +K G   N  V N+++ MY  CR                   
Sbjct: 427 ACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVS 486

Query: 263 -----------DCLSDANQYFDEMTEKDLITWNTIIAGYEKS-GSSECLNMFSKMKSERF 310
                      + L DA   FD M  +D+++W TII+ Y ++    E +  F  M  E  
Sbjct: 487 WNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHE 546

Query: 311 SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQK 370
            PN    T +++ C  L +   GQQ+H   ++ G+D  L +ANAL+ MY KCG  +DS K
Sbjct: 547 KPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCG-CADSHK 605

Query: 371 IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           +F  M +RD+ TW + + G   HG G+EAI++++ M   GV P+ + F+ +L ACSHAGL
Sbjct: 606 VFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGL 665

Query: 431 VDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
           VDEG ++FKSM+ DY + P  E Y C+VDLLGR G V+ A + I  MP +PD  +W  LL
Sbjct: 666 VDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALL 725

Query: 490 GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKK 549
           GACK H+   +G+ AA ++   +P+  G Y++LSNIY++ G W E A+ RKIM+  G  K
Sbjct: 726 GACKIHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSK 785

Query: 550 EVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           E G SW+++R+KV  F+  DK     + +   L+ L   +  T Y PD + ++HD++ E
Sbjct: 786 EPGCSWMQIRNKVHSFVTGDKQHEKIEEIDYTLQDLYTLLRGTGYVPDTEFVLHDIDEE 844



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 114/419 (27%), Positives = 210/419 (50%), Gaps = 15/419 (3%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
           +++  Y     + +A  LF +MP+R++V+WTVMI+GY     H + W +F  M     +P
Sbjct: 162 SMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASP 221

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           +    +SVL A  G++ L    ++  + +K G E  + +  S+++VY     ++D A   
Sbjct: 222 DQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKF 281

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F+ M  +N+ +W+T+I   +H G     + V+          +P   SI  +    TG  
Sbjct: 282 FDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGR--------DPVK-SIPSQTALLTGLA 332

Query: 231 SFGKLIHAAVIKHGFGSNLPV-MNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
             G++  A ++       + V  N+++  Y +   + +A + FD M  ++ I+W  +IAG
Sbjct: 333 RCGRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAG 392

Query: 290 YEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           Y ++G S E L++   +      P+  + TS   AC+ + AL  G+QVH+  V+ G   N
Sbjct: 393 YAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFN 452

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
             + NALI MY KC N+   +++F+ M  +D V+W S +     +   ++A  +FD M+ 
Sbjct: 453 SYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLS 512

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
                D + +  +++A + A   DE +++FK+M   +  PN  I   ++ + G  G  K
Sbjct: 513 R----DVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAK 567



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 125/549 (22%), Positives = 236/549 (42%), Gaps = 50/549 (9%)

Query: 60  GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSS-- 117
           G + EAR +FD MP RD+++W  MI+ Y +      A  +F  +    V      LS   
Sbjct: 47  GRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVRTATILLSGYA 106

Query: 118 ----VLKACKGMKSL--SNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS-------- 163
               VL A +    +   N    + M       G I +   L D   +  ++        
Sbjct: 107 RLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMPSRDVTSWNSMVTG 166

Query: 164 ------MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSF 217
                 M +A  +F  M  +N V+WT +I+GY        G  +F+ M  EG   +  +F
Sbjct: 167 YCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNF 226

Query: 218 SIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR-FDCLSDANQYFDEMT 276
           +  + A      +   +++   V+K GF S++ +  SIL++Y R    L  A ++FD M 
Sbjct: 227 ASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMV 286

Query: 277 EKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALS-CGQ 334
           E++  TW+T+IA     G  +  + ++ +       P      SI +  A L  L+ CG+
Sbjct: 287 ERNEYTWSTMIAALSHGGRIDAAIAVYGR------DP----VKSIPSQTALLTGLARCGR 336

Query: 335 QVHAGIVRRGLDGNLALA-NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
              A I+   +   + ++ NA+I  Y + G + +++++F  M  R+ ++W  M+ GY  +
Sbjct: 337 ITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQN 396

Query: 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIY 453
           G  +EA++L   + ++G+ P      +   ACSH G ++ G +            N  + 
Sbjct: 397 GRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVC 456

Query: 454 GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513
             ++ + G+   ++   ++   M  K D   W   + A  ++ +       A  + D   
Sbjct: 457 NALISMYGKCRNMEYVRQVFNRMRVK-DTVSWNSFIAALVQNNMLE----DARHIFD--- 508

Query: 514 NMMG----TYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIAND 569
           NM+     ++  + + YA   + +E  +F K M  +   ++     + +   VCG + + 
Sbjct: 509 NMLSRDVVSWTTIISAYAQAERGDEAVEFFKTM--LHEHEKPNSPILTILLSVCGGLGSA 566

Query: 570 KMGSHTQYV 578
           K+G     V
Sbjct: 567 KLGQQIHTV 575



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 91/197 (46%), Gaps = 11/197 (5%)

Query: 261 RFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSI 320
           R   L +A + FD M  +D+I WN++I+ Y  SG  E   +     S     N  T T +
Sbjct: 45  RLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAIS---GGNVRTATIL 101

Query: 321 IAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDL 380
           ++  A L  +   ++V  G+  R    N    NA++  Y + G+I+ ++++F  M  RD+
Sbjct: 102 LSGYARLGRVLDARRVFDGMPER----NTVAWNAMVSCYVQNGDITMARRLFDAMPSRDV 157

Query: 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS 440
            +W SM+ GY       +A  LF +M +  +    ++    +    H     +G   F+ 
Sbjct: 158 TSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHG----KGWDIFRM 213

Query: 441 MNDYNVNPNKEIYGCVV 457
           M+    +P++  +  V+
Sbjct: 214 MHHEGASPDQSNFASVL 230



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 81/184 (44%), Gaps = 15/184 (8%)

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           V R LD   +  +A I   A+ G + +++++F  M  RD++ W SM+  Y   G  ++A 
Sbjct: 27  VHRALDK--SAHSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDAR 84

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLL 460
            LFD +    VR   I    +L+  +  G V +  + F  M + N      +  C V   
Sbjct: 85  ILFDAISGGNVRTATI----LLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYV--- 137

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLL-GACKEHRLP---NLGKLAALRVLDLKPNMM 516
            + G +  A  L  +MP + D + W  ++ G C   ++    NL K    R L     M+
Sbjct: 138 -QNGDITMARRLFDAMPSR-DVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMI 195

Query: 517 GTYI 520
             Y+
Sbjct: 196 SGYV 199


>gi|224113417|ref|XP_002316490.1| predicted protein [Populus trichocarpa]
 gi|222865530|gb|EEF02661.1| predicted protein [Populus trichocarpa]
          Length = 492

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 181/493 (36%), Positives = 290/493 (58%), Gaps = 3/493 (0%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM 174
           L S+L+ C   +        HG  I+ GLE      N LM++Y+ C + +  A  VF+++
Sbjct: 1   LHSLLQFCAKNREPITGKACHGQVIRLGLETDTLTSNMLMNMYSKCGL-IRRACKVFDEI 59

Query: 175 KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGK 234
             ++ VSW  +I     +G     + +F EM  EG   + ++ S  V ACA+ G V F +
Sbjct: 60  PERSMVSWNIMIGTCVQNGEEEKAIDIFLEMQREGSPCSEFTVSSVVCACAAKGDVFFCR 119

Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKS 293
            +HA  IK    +++ V  +++D+Y +   + DA+  F+ M E++ +TW++I+AG+ +  
Sbjct: 120 QLHAFAIKAVVDADVFVGTALIDVYAKCGSIEDASCVFEGMPERNDVTWSSIVAGFVQNE 179

Query: 294 GSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353
              E L +F++ K      N F  +S+I ACA LAAL  G+QVHA + R G   N  +A+
Sbjct: 180 LYEEGLVLFARGKEMGLENNQFMISSVIRACAGLAALIEGRQVHAIVCRTGFGPNNFVAS 239

Query: 354 ALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP 413
           AL+DMYAKCG+I ++  +F  +  +++V W +++ G+  H    E + LF+EM ++G++P
Sbjct: 240 ALVDMYAKCGSIEEAYVLFCNIEKKNVVLWNAIISGFAKHACSSEVMNLFEEMQQTGMQP 299

Query: 414 DRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
           D + ++AVL+AC H GLVD+G  YF  M  ++NV+PN   Y C+VD+LGR G V EA+EL
Sbjct: 300 DEVTYVAVLSACVHVGLVDKGRSYFDLMTREHNVSPNVLHYSCMVDILGRGGLVHEAHEL 359

Query: 473 IKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKW 532
           +  MPF    S+WG LL +C+ H    L ++AA  + +++P+  G Y++L+N YAA  KW
Sbjct: 360 MTKMPFAATASMWGSLLASCRIHGNLELAEIAAKNLFEMEPDRGGNYVLLANTYAASKKW 419

Query: 533 EEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNET 592
           EE AK RK ++G    KE G SWIE++DKV  F+A ++       +Y  L  L+  M + 
Sbjct: 420 EEAAKARKSLKGSEILKERGKSWIEIKDKVHTFMAGERTHPRITDIYLELNNLLEEMTKL 479

Query: 593 AYEPDIDCLIHDL 605
             + + D  +HDL
Sbjct: 480 VNKAETDFDLHDL 492



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 108/374 (28%), Positives = 201/374 (53%), Gaps = 11/374 (2%)

Query: 48  LATNLIKSYFDE-GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           L +N++ + + + GLI  A  +FDE+PER +VSW +MI          +A  +F+EM R 
Sbjct: 34  LTSNMLMNMYSKCGLIRRACKVFDEIPERSMVSWNIMIGTCVQNGEEEKAIDIFLEMQRE 93

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
               + FT+SSV+ AC     +     +H  AIK  ++  ++V  +L+DVYA C  S+++
Sbjct: 94  GSPCSEFTVSSVVCACAAKGDVFFCRQLHAFAIKAVVDADVFVGTALIDVYAKCG-SIED 152

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  VF  M  +NDV+W++++ G+  +     GL +F      G+E N +  S  +RACA 
Sbjct: 153 ASCVFEGMPERNDVTWSSIVAGFVQNELYEEGLVLFARGKEMGLENNQFMISSVIRACAG 212

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  G+ +HA V + GFG N  V ++++DMY +   + +A   F  + +K+++ WN I
Sbjct: 213 LAALIEGRQVHAIVCRTGFGPNNFVASALVDMYAKCGSIEEAYVLFCNIEKKNVVLWNAI 272

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-G 344
           I+G+ K   SSE +N+F +M+     P+  T+ ++++AC  +  +  G+     + R   
Sbjct: 273 ISGFAKHACSSEVMNLFEEMQQTGMQPDEVTYVAVLSACVHVGLVDKGRSYFDLMTREHN 332

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVT-WTSMMIGYGAHGHGKEAIELF 403
           +  N+   + ++D+  + G + ++ ++ ++M      + W S++     HG+    +EL 
Sbjct: 333 VSPNVLHYSCMVDILGRGGLVHEAHELMTKMPFAATASMWGSLLASCRIHGN----LELA 388

Query: 404 DEMVKS--GVRPDR 415
           +   K+   + PDR
Sbjct: 389 EIAAKNLFEMEPDR 402



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 44  GPS-ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           GP+  +A+ L+  Y   G IEEA  LF  + +++VV W  +I+G+    C ++   +F E
Sbjct: 232 GPNNFVASALVDMYAKCGSIEEAYVLFCNIEKKNVVLWNAIISGFAKHACSSEVMNLFEE 291

Query: 103 MVRNEVNPNAFTLSSVLKAC 122
           M +  + P+  T  +VL AC
Sbjct: 292 MQQTGMQPDEVTYVAVLSAC 311


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 185/557 (33%), Positives = 315/557 (56%), Gaps = 15/557 (2%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
            LI +Y  E  +E A  LFDEMP+ D VS+  +IA Y        A+ +F+EM    ++ 
Sbjct: 79  TLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDM 138

Query: 111 NAFTLSSVLKACKGMKSLSNAALV---HGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + FTLS ++ AC G+    N  L+   H +++  GL+  + V N+L+  Y+     +  A
Sbjct: 139 DGFTLSGIITAC-GI----NVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGF-LKEA 192

Query: 168 RLVFNDMKW-KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           R +F+ +   +++VSW +++  Y     G   L ++ EM + G+ ++ ++ +  + A  +
Sbjct: 193 RRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTN 252

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFD-CLSDANQYFDEMTEKDLITWNT 285
              +  G   HA +IK G+  N  V + ++D+Y +   C+ D  + FDE++  DL+ WNT
Sbjct: 253 VQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNT 312

Query: 286 IIAGYE--KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           +I+GY   +  S E L  F +++     P+  +   +I+AC+ +++ S G+QVH   ++ 
Sbjct: 313 MISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKL 372

Query: 344 GLDGN-LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            +  N +++ NALI MY+KCGN+ D++ +F  M + + V++ SM+ GY  HG G +++ L
Sbjct: 373 DIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHL 432

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLG 461
           F  M++ G  P  I F++VL AC+H G V++G  YF  M   + + P    + C++DLLG
Sbjct: 433 FQRMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLG 492

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           RAG++ EA  LI+++PF P    W  LLGAC+ H    L   AA R+L L P     Y++
Sbjct: 493 RAGKLSEAERLIETIPFDPGFFFWSALLGACRIHGNVELAIKAANRLLQLDPLNAAPYVM 552

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGV 581
           L+NIY+  G+ ++ A  RK+MR  G KK+ G SWIEV  ++  F+A D      + +   
Sbjct: 553 LANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHIFVAEDTFHPMIKKIQEY 612

Query: 582 LEMLIRHMNETAYEPDI 598
           LE ++R + +  Y P++
Sbjct: 613 LEEMMRKIKKVGYTPEV 629



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 182/395 (46%), Gaps = 39/395 (9%)

Query: 119 LKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKN 178
           LK C   + L     +H + IK  +  S Y+ N  + +Y+ C   +  AR VF+     N
Sbjct: 15  LKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKC-RRLSAARRVFDHTHDCN 73

Query: 179 DVSWTTLIT-------------------------------GYAHSGNGYGGLGVFKEMLL 207
             S+ TLI+                                YA  G+      +F EM  
Sbjct: 74  VFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMRE 133

Query: 208 EGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSD 267
             ++M+ ++ S  + AC     V   + +HA  +  G  S + V N+++  Y +   L +
Sbjct: 134 AFLDMDGFTLSGIITACGIN--VGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKE 191

Query: 268 ANQYFDEMTE-KDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACA 325
           A + F  ++E +D ++WN+++  Y +    S+ L ++ +M       + FT  S++ A  
Sbjct: 192 ARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFT 251

Query: 326 TLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGN-ISDSQKIFSEMSDRDLVTWT 384
            +  L  G Q HA +++ G   N  + + LID+Y+KCG  + D +K+F E+S+ DLV W 
Sbjct: 252 NVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWN 311

Query: 385 SMMIGYGAHGH-GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND 443
           +M+ GY  +     EA+E F ++   G RPD    + V++ACS+     +G +       
Sbjct: 312 TMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALK 371

Query: 444 YNVNPNK-EIYGCVVDLLGRAGRVKEAYELIKSMP 477
            ++  N+  +   ++ +  + G +++A  L  +MP
Sbjct: 372 LDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMP 406



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 134/256 (52%), Gaps = 12/256 (4%)

Query: 240 VIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-C 298
           V  H    N+   N+++  Y +   +  A+Q FDEM + D +++NT+IA Y + G ++  
Sbjct: 65  VFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPA 124

Query: 299 LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDM 358
             +F +M+      + FT + II AC     L   +Q+HA  V  GLD  +++ NALI  
Sbjct: 125 FQLFLEMREAFLDMDGFTLSGIITACGINVGLI--RQLHALSVVTGLDSYVSVGNALITS 182

Query: 359 YAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIV 417
           Y+K G + ++++IF  +S DRD V+W SM++ Y  H  G +A+EL+ EM   G+  D   
Sbjct: 183 YSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFT 242

Query: 418 FMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG----RVKEAYELI 473
             +VLTA ++   +  GL++   +     + N  +   ++DL  + G      ++ ++ I
Sbjct: 243 LASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEI 302

Query: 474 KSMPFKPDESVWGPLL 489
            +    PD  +W  ++
Sbjct: 303 SN----PDLVLWNTMI 314



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 8/154 (5%)

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           D N+   N LI  YAK   +  + ++F EM   D V++ +++  Y   G  + A +LF E
Sbjct: 71  DCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLE 130

Query: 406 MVKSGVRPDRIVFMAVLTACS-HAGLVDE--GLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           M ++ +  D      ++TAC  + GL+ +   L     ++ Y       +   ++    +
Sbjct: 131 MREAFLDMDGFTLSGIITACGINVGLIRQLHALSVVTGLDSY-----VSVGNALITSYSK 185

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR 496
            G +KEA  +   +    DE  W  ++ A  +HR
Sbjct: 186 NGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHR 219



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 40/82 (48%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           IP     +   LI  Y   G + +A+TLFD MPE + VS+  MIAGY       Q+  +F
Sbjct: 374 IPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLF 433

Query: 101 VEMVRNEVNPNAFTLSSVLKAC 122
             M+     P   T  SVL AC
Sbjct: 434 QRMLEMGFTPTNITFISVLAAC 455



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/134 (21%), Positives = 63/134 (47%), Gaps = 4/134 (2%)

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
           FS     F   +  C     L  G+ +HA  ++  +  +  L+N  + +Y+KC  +S ++
Sbjct: 4   FSSLLHNFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAAR 63

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
           ++F    D ++ ++ +++  Y    + + A +LFDEM +    PD + +  ++ A +  G
Sbjct: 64  RVFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQ----PDSVSYNTLIAAYARRG 119

Query: 430 LVDEGLKYFKSMND 443
                 + F  M +
Sbjct: 120 DTQPAFQLFLEMRE 133


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  339 bits (870), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 183/506 (36%), Positives = 284/506 (56%), Gaps = 14/506 (2%)

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGL-----EGSIYVENSLMDVYATCCISMD 165
           +  +L+ ++K C    +  +  L+H      G       G ++V NSL  +YA   + +D
Sbjct: 63  DPVSLTRLVKLCVRHGTADHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGL-LD 121

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHS-GNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           +A  +F+ M  +N V+WTT++   A + G     L     M  +GV  N Y+FS  + AC
Sbjct: 122 DALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGAC 181

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
            + G ++    +HA+ +K G  S++ V +S++D Y +   L    + FDEM  +DL+ WN
Sbjct: 182 TTPGMLT---AVHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEMVTRDLVVWN 238

Query: 285 TIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           +IIAG+ +SG     + +F +MK   FS N  T TS++ AC  +  L  G+QVHA +++ 
Sbjct: 239 SIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAGRQVHAHVLK- 297

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
             D +L L NAL+DMY KCG++ D+  +F  M  RD+++W++M+ G   +G   EA+ +F
Sbjct: 298 -YDRDLILHNALLDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQNGKSVEALRVF 356

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGR 462
           D M   GV P+ +  + VL ACSHAGLV++G  YF+SM   + + P +E + C+VDLLGR
Sbjct: 357 DLMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMKRLFGIQPEREHHNCMVDLLGR 416

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AG++ EA E I  M  +PD  +W  LLGAC+ H+  +L   AA  +L L+P+  G  ++L
Sbjct: 417 AGKLDEAVEFIHGMSLEPDSVIWRTLLGACRMHKNASLAAYAAREILKLEPDDQGARVLL 476

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           SN YA   +W +  K  K MR  G +KE G SWIE+  +V  FIA D     +  +   L
Sbjct: 477 SNTYADLRQWTDAEKPWKAMRDRGMRKEPGRSWIELEKRVHVFIAGDLSHPCSDTIIQEL 536

Query: 583 EMLIRHMNETAYEPDIDCLIHDLEGE 608
             LI  +    Y P  + ++ DL  E
Sbjct: 537 NRLIGRIKSLGYVPQTEFVLQDLPTE 562



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 119/387 (30%), Positives = 203/387 (52%), Gaps = 14/387 (3%)

Query: 34  IQSDPPLIPKGPS--ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFN 91
           +++  PL   G     ++ +L   Y   GL+++A  +FD MP R+VV+WT ++A   S +
Sbjct: 90  VEAHGPLPHDGAGGLFVSNSLASMYAKFGLLDDALRMFDGMPVRNVVTWTTVVAALASAD 149

Query: 92  CHNQ-AWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVE 150
              Q A    V M R+ V PNA+T SSVL AC     L+    VH   +K GL+  ++V 
Sbjct: 150 GRKQEALRFLVAMRRDGVAPNAYTFSSVLGACTTPGMLTA---VHASTVKAGLDSDVFVR 206

Query: 151 NSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGV 210
           +SL+D Y      +D  R VF++M  ++ V W ++I G+A SG+G G + +F  M   G 
Sbjct: 207 SSLIDAYVKLG-DLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGF 265

Query: 211 EMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQ 270
             N  + +  +RAC     +  G+ +HA V+K  +  +L + N++LDMYC+   L DA+ 
Sbjct: 266 SSNQGTLTSVLRACTGMVMLEAGRQVHAHVLK--YDRDLILHNALLDMYCKCGSLEDADA 323

Query: 271 YFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAA 329
            F  M ++D+I+W+T+++G  ++G S E L +F  MKS+  +PN  T   ++ AC+    
Sbjct: 324 LFHRMPQRDVISWSTMVSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGL 383

Query: 330 LSCGQQVHAGIVRR-GLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMM 387
           +  G      + R  G+       N ++D+  + G + ++ +    MS + D V W +++
Sbjct: 384 VEDGWHYFRSMKRLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTLL 443

Query: 388 IGYGAHGHGKEAIELFDEMVKSGVRPD 414
                H +   A     E++K  + PD
Sbjct: 444 GACRMHKNASLAAYAAREILK--LEPD 468


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 183/505 (36%), Positives = 298/505 (59%), Gaps = 6/505 (1%)

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           +E N +A+  ++ L+ C      S    +H   +K G    ++  N L+++Y       D
Sbjct: 34  SEFNSHAY--ANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCD 91

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            ++L F++M  +N +S+ TLI GYA S      + +F  +  E V  N ++F+  ++ACA
Sbjct: 92  ASKL-FDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHRE-VLPNQFTFASVLQACA 149

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           +   ++ G  IH  VIK G  S++ V N+++D+Y +   + ++ + F E   ++ +TWNT
Sbjct: 150 TMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNT 209

Query: 286 IIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I G+ + G  E  L +F  M   R      T++S + ACA+LAAL  G Q+H+  V+  
Sbjct: 210 VIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTT 269

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
            D ++ + NALIDMYAKCG+I D++ +F  M+ +D V+W +M+ GY  HG G+EA+ +FD
Sbjct: 270 FDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFD 329

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRA 463
           +M ++ V+PD++ F+ VL+AC++AGL+D+G  YF SM  D+ + P  E Y C+V LLGR 
Sbjct: 330 KMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRG 389

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           G + +A +LI  +PF+P   VW  LLGAC  H    LG+++A RVL+++P    T+++LS
Sbjct: 390 GHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLS 449

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           N+YA   +W+  A  RK M+  G KKE G+SWIE +  V  F   D      + + G+LE
Sbjct: 450 NMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLE 509

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGE 608
            L     +  Y P+ + ++ D+E E
Sbjct: 510 WLHMKTKKAGYIPNYNVVLLDVEDE 534



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 195/372 (52%), Gaps = 17/372 (4%)

Query: 31  KSSIQSDPPLIPKGP-----------SILATN-LIKSYFDEGLIEEARTLFDEMPERDVV 78
           +  IQ D P   KG             + A N L+  Y     + +A  LFDEMPER+ +
Sbjct: 46  QDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTI 105

Query: 79  SWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMA 138
           S+  +I GY       +A  +FV + R EV PN FT +SVL+AC  M+ L+    +H   
Sbjct: 106 SFVTLIQGYAESVRFLEAIELFVRLHR-EVLPNQFTFASVLQACATMEGLNLGNQIHCHV 164

Query: 139 IKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGG 198
           IK GL   ++V N+LMDVYA C   M+N+  +F +   +NDV+W T+I G+   G+G   
Sbjct: 165 IKIGLHSDVFVSNALMDVYAKCG-RMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKA 223

Query: 199 LGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDM 258
           L +F  ML   V+    ++S A+RACAS   +  G  IH+  +K  F  ++ V N+++DM
Sbjct: 224 LRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDM 283

Query: 259 YCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTF 317
           Y +   + DA   FD M ++D ++WN +I+GY   G   E L +F KM+     P+  TF
Sbjct: 284 YAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTF 343

Query: 318 TSIIAACATLAALSCGQQVHAGIVR-RGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
             +++ACA    L  GQ     +++  G++  +     ++ +  + G++  + K+  E+ 
Sbjct: 344 VGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIP 403

Query: 377 -DRDLVTWTSMM 387
               ++ W +++
Sbjct: 404 FQPSVMVWRALL 415


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 180/495 (36%), Positives = 289/495 (58%), Gaps = 5/495 (1%)

Query: 117 SVLKACKGMKSLSNAALVHGMAIKEGLE-GSIYVENSLMDVYATCCISMDNARLVFNDMK 175
           S+L+ C   K       +H  +I+ G+   +  +   L+    +    M  A  VF  + 
Sbjct: 22  SLLQFCASSKH--KLKQIHAFSIRHGVSLNNPDMGKHLIFTIVSLSAPMSYAYNVFTVIH 79

Query: 176 WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKL 235
             N  +W T+I GYA S N       +++M++  VE + +++   ++A + +  V  G+ 
Sbjct: 80  NPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLNVREGEA 139

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS 295
           IH+  I++GF S + V NS+L +Y        A + F+ M E+DL+ WN++I G+  +G 
Sbjct: 140 IHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFALNGR 199

Query: 296 -SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
            +E L +F +M  E   P+ FT  S+++A A L AL  G++VH  +++ GL  N  + N+
Sbjct: 200 PNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKNSHVTNS 259

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
           L+D+YAKCG I ++Q++FSEMS+R+ V+WTS+++G   +G G+EA+ELF EM   G+ P 
Sbjct: 260 LLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPS 319

Query: 415 RIVFMAVLTACSHAGLVDEGLKYFKSMNDY-NVNPNKEIYGCVVDLLGRAGRVKEAYELI 473
            I F+ VL ACSH G++DEG +YF+ M +   + P  E YGC+VDLL RAG VK+AYE I
Sbjct: 320 EITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYI 379

Query: 474 KSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWE 533
           ++MP +P+  +W  LLGAC  H    LG++A   +L+L+P   G Y++LSN+YA+E +W 
Sbjct: 380 QNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLLNLEPKHSGDYVLLSNLYASERRWS 439

Query: 534 EFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETA 593
           +    R+ M   G KK  G S +E+ ++V  F   D+    +Q VY +LE +   +    
Sbjct: 440 DVQVIRRSMLKDGVKKTPGYSLVELGNRVYEFTMGDRSHPQSQDVYALLEKITELLKLEG 499

Query: 594 YEPDIDCLIHDLEGE 608
           Y P    ++ D+E E
Sbjct: 500 YVPHTANVLADIEEE 514



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 172/334 (51%), Gaps = 4/334 (1%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           A  +F  +   +V +W  +I GY   +  + A+  + +MV + V P+  T   +LKA   
Sbjct: 71  AYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISK 130

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTT 184
             ++     +H + I+ G E  ++V+NSL+ +YA C    ++A  VF  MK ++ V+W +
Sbjct: 131 SLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACG-DTESAYKVFELMKERDLVAWNS 189

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG 244
           +I G+A +G     L +F+EM +EGVE + ++    + A A  G +  G+ +H  ++K G
Sbjct: 190 MINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVG 249

Query: 245 FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFS 303
              N  V NS+LD+Y +   + +A + F EM+E++ ++W ++I G   +G   E L +F 
Sbjct: 250 LSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFK 309

Query: 304 KMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-GLDGNLALANALIDMYAKC 362
           +M+ +   P+  TF  ++ AC+    L  G +    +    G+   +     ++D+ ++ 
Sbjct: 310 EMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRA 369

Query: 363 GNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHGH 395
           G +  + +    M  + + V W +++     HGH
Sbjct: 370 GLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGH 403



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 125/244 (51%), Gaps = 3/244 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +  +L+  Y   G  E A  +F+ M ERD+V+W  MI G+      N+A T+F EM    
Sbjct: 155 VQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFALNGRPNEALTLFREMSVEG 214

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V P+ FT+ S+L A   + +L     VH   +K GL  + +V NSL+D+YA C  ++  A
Sbjct: 215 VEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCG-AIREA 273

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           + VF++M  +N VSWT+LI G A +G G   L +FKEM  +G+  +  +F   + AC+  
Sbjct: 274 QRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHC 333

Query: 228 GWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLITWNT 285
           G +  G +       + G    +     ++D+  R   +  A +Y   M  + + + W T
Sbjct: 334 GMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRT 393

Query: 286 IIAG 289
           ++  
Sbjct: 394 LLGA 397



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 5/157 (3%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S +  +L+  Y   G I EA+ +F EM ER+ VSWT +I G        +A  +F EM  
Sbjct: 254 SHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEMEG 313

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKE--GLEGSIYVENSLMDVYATCCIS 163
             + P+  T   VL AC     L +    +   +KE  G+   I     ++D+ +   + 
Sbjct: 314 QGLVPSEITFVGVLYACSHCGML-DEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGLV 372

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLG 200
                 + N     N V W TL+   A + +G+ GLG
Sbjct: 373 KQAYEYIQNMPVQPNAVIWRTLLG--ACTIHGHLGLG 407


>gi|326522859|dbj|BAJ88475.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 691

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 190/563 (33%), Positives = 308/563 (54%), Gaps = 12/563 (2%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G + + + L++ Y   G    A  +   M   DVV++T +++          A     +M
Sbjct: 130 GDAWVGSCLVELYARCGSTRAAEAVLARMESPDVVAYTSLVSALCRSGEFGMAAEALGQM 189

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKE-GLEGSIYVENSLMDVYATCCI 162
           + + V PN  T++S+L AC     L     +HG  IK  G   S+Y  ++L+D Y+    
Sbjct: 190 MGHGVMPNEHTVTSILAACC---PLVLGVQIHGYMIKAMGFSQSVYTSSTLVDFYSRNG- 245

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGV-EMNPYSFSIAV 221
             D A+ VF++++ KN V+W T++  +   G     L +F EM+ EGV   N ++FSIA+
Sbjct: 246 EFDMAKTVFDNLQCKNVVTWCTMMQLHIRDGRPEDALQLFDEMISEGVVSPNEFAFSIAL 305

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
            AC S   ++ G  +H+  IKHG  S+L V N++L MY R   +      F  + + D++
Sbjct: 306 GACES---IALGSQLHSLAIKHGLASHLRVSNALLSMYGRIGLVQQLEAMFRGIEDPDIV 362

Query: 282 TWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           +W   I+ Y ++G  E  + + S+M S+  +PN + F+S++++CA LA L  G+Q H   
Sbjct: 363 SWTAAISAYFQNGHGEKAIALLSRMHSQGLTPNDYAFSSVLSSCADLALLDQGRQFHCLA 422

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           ++ G D      NALI+MY+KCG I  ++  F  M  RD+ +W S++ G+  HG     +
Sbjct: 423 LKLGCDVKTCTGNALINMYSKCGQIVPARLAFDIMDHRDVTSWNSLIHGHAQHGEVDMVL 482

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS--MNDYNVNPNKEIYGCVVD 458
           + F EM  +G  P+    + VL AC+HAGLVDEG+ +F+S     Y        Y C+VD
Sbjct: 483 KAFSEMCSNGGEPNESTLLGVLAACNHAGLVDEGVAFFRSAMAGLYGTFLTPPHYACMVD 542

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518
           +LGR+GR  +A  LI+ MPF+P   VW  LL +C+ H     G+LAA ++++L      +
Sbjct: 543 MLGRSGRFDDALCLIEEMPFEPGVLVWKTLLASCRLHGNLETGRLAAEKLVELSDQDSAS 602

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
           Y+++S I+A  G+W +    R+ M   G +KE G SW+EVR++V  F+A D     +  +
Sbjct: 603 YVLMSGIHAMHGEWRDADMVRRRMDEAGVRKEAGRSWVEVRNEVHTFVAQDVSHPDSPSI 662

Query: 579 YGVLEMLIRHMNETAYEPDIDCL 601
           Y +L  L   M +TAY+ D++ L
Sbjct: 663 YRMLWELSDAMRDTAYDEDVELL 685



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 122/441 (27%), Positives = 220/441 (49%), Gaps = 13/441 (2%)

Query: 60  GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119
           G + +A  LFD MP ++VV+WT  ++G T       A  +F +MV + V  N F  ++ L
Sbjct: 43  GRVADALDLFDRMPRKNVVAWTSAVSGLTRNGRPEAAGEMFADMVESGVALNDFACNAAL 102

Query: 120 KACKGMKSLS--NAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK 177
            AC      +      VH +A++ G  G  +V + L+++YA C  S   A  V   M+  
Sbjct: 103 AACAAAGPGALRTGEQVHSLAVRAGFVGDAWVGSCLVELYARCG-STRAAEAVLARMESP 161

Query: 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIH 237
           + V++T+L++    SG          +M+  GV  N ++ +  + AC     +  G  IH
Sbjct: 162 DVVAYTSLVSALCRSGEFGMAAEALGQMMGHGVMPNEHTVTSILAACCP---LVLGVQIH 218

Query: 238 AAVIKH-GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS 296
             +IK  GF  ++   ++++D Y R      A   FD +  K+++TW T++  + + G  
Sbjct: 219 GYMIKAMGFSQSVYTSSTLVDFYSRNGEFDMAKTVFDNLQCKNVVTWCTMMQLHIRDGRP 278

Query: 297 E-CLNMFSKMKSER-FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
           E  L +F +M SE   SPN F F+  + AC ++A    G Q+H+  ++ GL  +L ++NA
Sbjct: 279 EDALQLFDEMISEGVVSPNEFAFSIALGACESIA---LGSQLHSLAIKHGLASHLRVSNA 335

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
           L+ MY + G +   + +F  + D D+V+WT+ +  Y  +GHG++AI L   M   G+ P+
Sbjct: 336 LLSMYGRIGLVQQLEAMFRGIEDPDIVSWTAAISAYFQNGHGEKAIALLSRMHSQGLTPN 395

Query: 415 RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
              F +VL++C+   L+D+G ++         +        ++++  + G++  A     
Sbjct: 396 DYAFSSVLSSCADLALLDQGRQFHCLALKLGCDVKTCTGNALINMYSKCGQIVPARLAFD 455

Query: 475 SMPFKPDESVWGPLLGACKEH 495
            M  + D + W  L+    +H
Sbjct: 456 IMDHR-DVTSWNSLIHGHAQH 475



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 34/56 (60%)

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411
           +D   K G ++D+  +F  M  +++V WTS + G   +G  + A E+F +MV+SGV
Sbjct: 36  LDGLMKAGRVADALDLFDRMPRKNVVAWTSAVSGLTRNGRPEAAGEMFADMVESGV 91


>gi|242077758|ref|XP_002448815.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
 gi|241939998|gb|EES13143.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
          Length = 913

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 193/582 (33%), Positives = 316/582 (54%), Gaps = 21/582 (3%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM-V 104
           ++L  NLI  Y   G ++ A  +F  M +R+VVSWT ++ G+           +  EM  
Sbjct: 252 TMLGNNLIDMYAKCGELDMAGEVFGGMRDRNVVSWTALMVGFLQHGDATGCLRLLGEMRA 311

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
            +E  PN +TLS+ LKAC   + +     +HG+ ++ G E    V +SL+ +Y+     +
Sbjct: 312 ASEAAPNEYTLSASLKACCVTEDMGAGVGIHGLCVRTGYEEHYVVASSLVLLYSKGG-RI 370

Query: 165 DNARLVFNDMKW-KNDVSWTTLITGYAHSGNGYGGLGVFKEMLL------EGVEMNPYSF 217
            +AR VF+     +   +W  +I+GYAH+G+G   L VF+EM        +  + + ++F
Sbjct: 371 GDARRVFDCAGLGRGLATWNAMISGYAHAGHGRDALLVFREMRRRRRRHEDQHQPDEFTF 430

Query: 218 SIAVRACASTGWVSFGKLIHAAVIKHGF--GSNLPVMNSILDMYCRFDCLSDANQYFDEM 275
           +  ++AC   G    G  +HAA+   GF   SN  +  +++DMY +   L  A Q F+ +
Sbjct: 431 ASLLKACGGLGAPREGAQVHAAMAASGFSTASNAILAGALVDMYVKCGRLPVAMQVFERL 490

Query: 276 TEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334
             K+ I W T++ G+ + G   E L +F +        +    +SI+   A  A +  G+
Sbjct: 491 ERKNAIQWTTVVVGHAQEGQVMEALELFRRFWRSGARADAHVLSSIVGVLADFALVEQGR 550

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
           QVH   V+     +++  N+++DMY KCG   +++++F E+  R++V+WT+M+ G G HG
Sbjct: 551 QVHCYGVKSPAGTDVSAGNSIVDMYLKCGLPDEAERMFREIPARNVVSWTTMINGLGKHG 610

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIY 453
            G+EA+ +F+EM   GV PD + ++A+L+ACSHAGLVDE  +YF  +  D  V P  E Y
Sbjct: 611 LGREAVAMFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHY 670

Query: 454 GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513
            C+VDLLGRAG ++EA +LI++MP +P   VW  LL AC+ H+   +G+ A   +L +  
Sbjct: 671 ACMVDLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAIDG 730

Query: 514 NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGS 573
           +    Y+ LSN++A  G W E  K R  MR  G KK+ G SW+E+  +V  F       +
Sbjct: 731 DNPVNYVTLSNVFAEAGAWRECHKVRDAMRRRGLKKQGGCSWVEIGKEVHFFYGGGDEEA 790

Query: 574 HTQYVYGVLEMLIRHMNETAYEP------DIDCLIHDLEGET 609
           H Q   G +  ++R +     E       D+   +HD++ E+
Sbjct: 791 HPQ--AGDIRRVLRDVETRVREQLGYCADDVQFALHDVDEES 830



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 125/446 (28%), Positives = 217/446 (48%), Gaps = 24/446 (5%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM 174
           ++ +L+A     SL     +HG   K G      + N+L+D+YA C   +D A  VF  M
Sbjct: 220 IADLLRASAKGSSLRGGVQLHGALTKLGFGSDTMLGNNLIDMYAKCG-ELDMAGEVFGGM 278

Query: 175 KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG-VEMNPYSFSIAVRACASTGWVSFG 233
           + +N VSWT L+ G+   G+  G L +  EM        N Y+ S +++AC  T  +  G
Sbjct: 279 RDRNVVSWTALMVGFLQHGDATGCLRLLGEMRAASEAAPNEYTLSASLKACCVTEDMGAG 338

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFD-EMTEKDLITWNTIIAGYEK 292
             IH   ++ G+  +  V +S++ +Y +   + DA + FD     + L TWN +I+GY  
Sbjct: 339 VGIHGLCVRTGYEEHYVVASSLVLLYSKGGRIGDARRVFDCAGLGRGLATWNAMISGYAH 398

Query: 293 SG-SSECLNMFSKM------KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           +G   + L +F +M        ++  P+ FTF S++ AC  L A   G QVHA +   G 
Sbjct: 399 AGHGRDALLVFREMRRRRRRHEDQHQPDEFTFASLLKACGGLGAPREGAQVHAAMAASGF 458

Query: 346 D--GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
               N  LA AL+DMY KCG +  + ++F  +  ++ + WT++++G+   G   EA+ELF
Sbjct: 459 STASNAILAGALVDMYVKCGRLPVAMQVFERLERKNAIQWTTVVVGHAQEGQVMEALELF 518

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY----FKSMNDYNVNPNKEIYGCVVDL 459
               +SG R D  V  +++   +   LV++G +      KS    +V+    I    VD+
Sbjct: 519 RRFWRSGARADAHVLSSIVGVLADFALVEQGRQVHCYGVKSPAGTDVSAGNSI----VDM 574

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNMMG 517
             + G   EA  + + +P +   S W  ++    +H L    +     +R   ++P+ + 
Sbjct: 575 YLKCGLPDEAERMFREIPARNVVS-WTTMINGLGKHGLGREAVAMFEEMRAGGVEPDEV- 632

Query: 518 TYIILSNIYAAEGKWEEFAKFRKIMR 543
           TY+ L +  +  G  +E  ++   +R
Sbjct: 633 TYLALLSACSHAGLVDECRRYFSCIR 658


>gi|28564593|dbj|BAC57760.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50509708|dbj|BAD31746.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 703

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 195/624 (31%), Positives = 318/624 (50%), Gaps = 65/624 (10%)

Query: 20  PIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVS 79
           PI+   L SV      S P L+P   S+ A + +                        + 
Sbjct: 108 PILLPRLLSV----YTSHPSLLPSAASVAADSTLP-----------------------LP 140

Query: 80  WTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAI 139
           + V+I+         QA   + EM +N V P+ FT  SVL+AC   + L     VH  A 
Sbjct: 141 YNVLISSCLRHGLPLQALAAYQEMGKNGVLPDVFTYPSVLRACAEARELVLGRAVHMHAA 200

Query: 140 KEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGN----- 194
             G++G+++ +N+LM +YA C   + +AR VF+ M  ++ VSW ++I+ YA  G      
Sbjct: 201 GAGMDGNLFFQNALMSMYAKCG-DLASARKVFDGMVQRDVVSWNSMISSYAAVGQWAEAM 259

Query: 195 -----------------------GY-------GGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
                                  GY         +G+ +EM+  G E++  +  I + AC
Sbjct: 260 ELFRRMRDEGTEVNSVTWNTIAGGYIQMRDYRAAVGLIREMVRGGAEVDYVTLVIGLNAC 319

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
           +  GW+  GK IH   ++        V N+++ MY R   +  A   F  +    ++TWN
Sbjct: 320 SRVGWLRLGKEIHGLAVRMCCDQVESVSNALITMYARCKDMECARMLFRMLECPGVVTWN 379

Query: 285 TIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           T+++ +  S  + E  ++F +M      PN  T  + +A CA +A L  GQ++H  IV+ 
Sbjct: 380 TMLSSFALSDCAEEASSIFREMICRGVKPNYVTVVTYLALCARVANLQHGQELHGHIVKH 439

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G  G   L N+LIDMY+K G +S +Q +F  M D D++++TSM+ GYG  G G  A+ LF
Sbjct: 440 GFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTMDDCDMISYTSMIAGYGMQGKGTVALRLF 499

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGR 462
           ++M+ SG++PD I+ + VL+ACSH+GLV EG + F  M   Y + P  E Y C++DL  R
Sbjct: 500 EQMIDSGIKPDHIIMVTVLSACSHSGLVLEGEELFNKMVISYGIKPQMEHYSCMIDLYAR 559

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AG +++A E++   PF P  ++W  L+GAC +     +G+ AA ++L+++    G Y+++
Sbjct: 560 AGLLEKAEEMLDHTPFPPTSTMWAALVGACHDRGNIEIGERAARKLLEMRTENAGHYVLI 619

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           +N+YAA G W+E A  RK+MR +G  K  G++W ++ +    F+  D+       +Y VL
Sbjct: 620 ANMYAAAGCWDELATVRKLMRDLGVTKAPGLAWTDLGNGFTPFLVGDRSNPLAPEIYVVL 679

Query: 583 EMLIRHMNETAYEPDIDCLIHDLE 606
           + L   M       D+D L  ++E
Sbjct: 680 DELSEQMRNINNCSDLDILAENIE 703


>gi|449522418|ref|XP_004168223.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Cucumis sativus]
          Length = 743

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 184/523 (35%), Positives = 295/523 (56%), Gaps = 3/523 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L+ +++  Y   G I +AR LF+ +  RD+VSW  +++ Y+      +   +   M   +
Sbjct: 184 LSNSMVNMYGKCGRIADARRLFESIGCRDIVSWNSLLSAYSKIGATEEILQLLQAMKIED 243

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + P+  T  S L A      L    LVHG+ +K+GL    +VE++L+ +Y  C   +D A
Sbjct: 244 IKPDKQTFCSALSASAIKGDLRLGKLVHGLMLKDGLNIDQHVESALVVLYLRC-RCLDPA 302

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             VF     K+ V WT +I+G   +      LGVF +M+   V+ +  + +  + ACA  
Sbjct: 303 YKVFKSTTEKDVVMWTAMISGLVQNDCADKALGVFYQMIESNVKPSTATLASGLAACAQL 362

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
           G    G  IH  V++ G   ++P  NS++ MY + + L  +   F++M EKDL++WN I+
Sbjct: 363 GCCDIGASIHGYVLRQGIMLDIPAQNSLVTMYAKCNKLQQSCSIFNKMVEKDLVSWNAIV 422

Query: 288 AGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           AG+ K+G  S+ +  F++M+     P+  T TS++ AC +  AL  G+ +H  ++R  L 
Sbjct: 423 AGHAKNGYLSKGIFFFNEMRKSFLRPDSITVTSLLQACGSAGALCQGKWIHNFVLRSSLI 482

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
             +    AL+DMY KCGN+ ++QK F  M  RDLV W+++++GYG +G G+ A+  + E 
Sbjct: 483 PCIMTETALVDMYFKCGNLENAQKCFDCMLQRDLVAWSTLIVGYGFNGKGEIALRKYSEF 542

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGR 465
           + +G+ P+ ++F++VL+ACSH GL+ +GL  ++SM  D+ ++PN E   CVVDLL RAG+
Sbjct: 543 LGTGMEPNHVIFISVLSACSHGGLISKGLSIYESMTKDFRMSPNLEHRACVVDLLSRAGK 602

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           V EAY   K M  +P   V G LL AC+ +    LGK+ A  + +LKP   G ++ L+N 
Sbjct: 603 VDEAYSFYKMMFKEPSIVVLGMLLDACRVNGRVELGKVIARDMFELKPVDPGNFVQLANS 662

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIAN 568
           YA+  +W+   K    MR +G KK  G S IEV      F A+
Sbjct: 663 YASMSRWDGVEKAWTQMRSLGLKKYPGWSSIEVHGTTFTFFAS 705



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 129/445 (28%), Positives = 234/445 (52%), Gaps = 6/445 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S + ++LI  Y   G I   R +FD M +R+VV WT +I  Y+     + A+++F +M  
Sbjct: 84  SYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGDIDIAFSMFKQMRE 143

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           + + P + TL S+L    G+  L     +H + I  G E  + + NS++++Y  C   + 
Sbjct: 144 SGIQPTSVTLLSLL---PGISKLPLLLCLHCLIILHGFESDLALSNSMVNMYGKCG-RIA 199

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +AR +F  +  ++ VSW +L++ Y+  G     L + + M +E ++ +  +F  A+ A A
Sbjct: 200 DARRLFESIGCRDIVSWNSLLSAYSKIGATEEILQLLQAMKIEDIKPDKQTFCSALSASA 259

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
             G +  GKL+H  ++K G   +  V ++++ +Y R  CL  A + F   TEKD++ W  
Sbjct: 260 IKGDLRLGKLVHGLMLKDGLNIDQHVESALVVLYLRCRCLDPAYKVFKSTTEKDVVMWTA 319

Query: 286 IIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I+G  +   + + L +F +M      P+  T  S +AACA L     G  +H  ++R+G
Sbjct: 320 MISGLVQNDCADKALGVFYQMIESNVKPSTATLASGLAACAQLGCCDIGASIHGYVLRQG 379

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           +  ++   N+L+ MYAKC  +  S  IF++M ++DLV+W +++ G+  +G+  + I  F+
Sbjct: 380 IMLDIPAQNSLVTMYAKCNKLQQSCSIFNKMVEKDLVSWNAIVAGHAKNGYLSKGIFFFN 439

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
           EM KS +RPD I   ++L AC  AG + +G      +   ++ P       +VD+  + G
Sbjct: 440 EMRKSFLRPDSITVTSLLQACGSAGALCQGKWIHNFVLRSSLIPCIMTETALVDMYFKCG 499

Query: 465 RVKEAYELIKSMPFKPDESVWGPLL 489
            ++ A +    M  + D   W  L+
Sbjct: 500 NLENAQKCFDCM-LQRDLVAWSTLI 523



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 190/358 (53%), Gaps = 7/358 (1%)

Query: 79  SWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMA 138
           S+  +++  +    H+Q    ++ M +     +A+T  S+ KAC  +   S+   +H   
Sbjct: 16  SFNSLVSRLSYQGAHHQVLQTYISMQKTHTQLDAYTFPSLFKACTNLNLFSHGLSLHQSV 75

Query: 139 IKEGLEGSIYVENSLMDVYATC-CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYG 197
           +  GL    Y+ +SL+  YA   CI +   R VF+ M  +N V WTT+I  Y+  G+   
Sbjct: 76  VVNGLSHDSYIGSSLISFYAKFGCIHL--GRKVFDTMLKRNVVPWTTIIGSYSREGDIDI 133

Query: 198 GLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILD 257
              +FK+M   G++  P S ++ +        +     +H  +I HGF S+L + NS+++
Sbjct: 134 AFSMFKQMRESGIQ--PTSVTL-LSLLPGISKLPLLLCLHCLIILHGFESDLALSNSMVN 190

Query: 258 MYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFT 316
           MY +   ++DA + F+ +  +D+++WN++++ Y K G++ E L +   MK E   P+  T
Sbjct: 191 MYGKCGRIADARRLFESIGCRDIVSWNSLLSAYSKIGATEEILQLLQAMKIEDIKPDKQT 250

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           F S ++A A    L  G+ VH  +++ GL+ +  + +AL+ +Y +C  +  + K+F   +
Sbjct: 251 FCSALSASAIKGDLRLGKLVHGLMLKDGLNIDQHVESALVVLYLRCRCLDPAYKVFKSTT 310

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434
           ++D+V WT+M+ G   +    +A+ +F +M++S V+P      + L AC+  G  D G
Sbjct: 311 EKDVVMWTAMISGLVQNDCADKALGVFYQMIESNVKPSTATLASGLAACAQLGCCDIG 368



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 158/310 (50%), Gaps = 5/310 (1%)

Query: 181 SWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAV 240
           S+ +L++  ++ G  +  L  +  M     +++ Y+F    +AC +    S G  +H +V
Sbjct: 16  SFNSLVSRLSYQGAHHQVLQTYISMQKTHTQLDAYTFPSLFKACTNLNLFSHGLSLHQSV 75

Query: 241 IKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CL 299
           + +G   +  + +S++  Y +F C+    + FD M +++++ W TII  Y + G  +   
Sbjct: 76  VVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGDIDIAF 135

Query: 300 NMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMY 359
           +MF +M+     P   T  S++     ++ L     +H  I+  G + +LAL+N++++MY
Sbjct: 136 SMFKQMRESGIQPTSVTLLSLLPG---ISKLPLLLCLHCLIILHGFESDLALSNSMVNMY 192

Query: 360 AKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFM 419
            KCG I+D++++F  +  RD+V+W S++  Y   G  +E ++L   M    ++PD+  F 
Sbjct: 193 GKCGRIADARRLFESIGCRDIVSWNSLLSAYSKIGATEEILQLLQAMKIEDIKPDKQTFC 252

Query: 420 AVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
           + L+A +  G +  G      M    +N ++ +   +V L  R   +  AY++ KS   K
Sbjct: 253 SALSASAIKGDLRLGKLVHGLMLKDGLNIDQHVESALVVLYLRCRCLDPAYKVFKSTTEK 312

Query: 480 PDESVWGPLL 489
            D  +W  ++
Sbjct: 313 -DVVMWTAMI 321


>gi|125575213|gb|EAZ16497.1| hypothetical protein OsJ_31969 [Oryza sativa Japonica Group]
          Length = 617

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 198/541 (36%), Positives = 306/541 (56%), Gaps = 9/541 (1%)

Query: 72  MPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNA 131
           MP R+ VSWT +++G +    H  A   F  M R  V P  F LSS  +A   + +    
Sbjct: 1   MPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPG 60

Query: 132 ALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAH 191
           A +H + ++ G +  ++V ++L D+Y+ C +  +  R VF+ M  K+ V+WT +I GYA 
Sbjct: 61  AQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACR-VFDQMPQKDAVAWTAMIDGYAK 119

Query: 192 SGNGYGGLGVFKEMLLEG-VEMNPYSFSIAVRACA--STGWVSFGKLIHAAVIKHGFGSN 248
           +G+    +  F++M  EG V  + + F   + A      GW+S  K IH  V K GF   
Sbjct: 120 NGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLS--KSIHCCVTKAGFELE 177

Query: 249 LPVMNSILDMYCR-FDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMK 306
           + V N+++DMY +  D  S +     +    ++++  ++I GY E     E L ++ +++
Sbjct: 178 VAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELR 237

Query: 307 SERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNIS 366
            +   PN FTF+S+I  CA  A L  G Q+HA +++  L  +  + + L+DMY KCG IS
Sbjct: 238 RQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLIS 297

Query: 367 DSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS 426
            S ++F+E+  R  + W +++  +  HGHG+EAI+ FD M+ SG+RP+ I F+++LTACS
Sbjct: 298 LSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACS 357

Query: 427 HAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVW 485
           HAGLVDEGLKYF SM + + + P +E Y C++D  GRAGR+ EAY+ I  MP KP+   W
Sbjct: 358 HAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGW 417

Query: 486 GPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545
             LLGAC+      LG++AA  ++ L+P   G ++ LS IYA+ G+WE+    RK+MR  
Sbjct: 418 CSLLGACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDS 477

Query: 546 GSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDL 605
             KK  G SW++   K   F + D      + +Y  LE L   + E  Y PD   L  +L
Sbjct: 478 RIKKLPGFSWVDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNL 537

Query: 606 E 606
           E
Sbjct: 538 E 538



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/355 (29%), Positives = 169/355 (47%), Gaps = 26/355 (7%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A+NL   Y   GL+ EA  +FD+MP++D V+WT MI GY        A   F +M R  
Sbjct: 78  VASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREG 137

Query: 108 -VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V  +     SVL A  G+K    +  +H    K G E  + V N+L+D+YA        
Sbjct: 138 LVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESA 197

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           +R++  D    N VS T++I GY  +      L ++ E+  +GVE N ++FS  ++ CA 
Sbjct: 198 SRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAM 257

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  G  +HA VIK     +  V ++++DMY +   +S + Q F+E+  +  I WN +
Sbjct: 258 QALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAV 317

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I  + + G   E +  F +M      PN   F S++ AC+           HAG+V  GL
Sbjct: 318 INVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACS-----------HAGLVDEGL 366

Query: 346 DGNLALANA------------LIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMM 387
               ++  A            +ID Y + G + ++ K  SEM  + +   W S++
Sbjct: 367 KYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLL 421



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 7/103 (6%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S + + L+  Y   GLI  +  LF+E+  R  ++W  +I  +       +A   F  M+ 
Sbjct: 280 SFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIY 339

Query: 106 NEVNPNAFTLSSVLKAC-------KGMKSLSNAALVHGMAIKE 141
           + + PN     S+L AC       +G+K   +    HG+  KE
Sbjct: 340 SGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKE 382


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 177/563 (31%), Positives = 310/563 (55%), Gaps = 4/563 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++  +L+ +Y     +  A  LF  M  +D V++  ++ GY++   + +A  +F+E+  +
Sbjct: 176 MVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNS 235

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + P+ FT +++L A  G+        VHG  +K     +++V N+L+D Y+     +D 
Sbjct: 236 GIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKH-DQVDE 294

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
              +F +M   + +S+  +IT YA +G       +F+++     +   + F+  +    S
Sbjct: 295 VGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATS 354

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
           +  +  G+ IH   I  G      V N+++DMY + +   +A + FD +  K  + W  +
Sbjct: 355 SLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAM 414

Query: 287 IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+ Y + G   E +N+FS M+      +  TF SI+ ACA LA++S G+Q+H+ ++R G 
Sbjct: 415 ISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSGF 474

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             N+   +AL+D YAKCG ++D+ K F EM +R+ V+W +++  Y  +G+    +  F +
Sbjct: 475 MSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQ 534

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAG 464
           M++SG +PD + F++VL+ACSH G V+E L +F SM   Y V P +E Y  +VD+L R G
Sbjct: 535 MIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNG 594

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP-NMMGTYIILS 523
           R  EA +L+  MPF+P E +W  +L +C+ H+   L K AA R+ +++       YI +S
Sbjct: 595 RFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMS 654

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           NIYA  G+W+  AK +K MR  G +K    SW+E++ +   F ANDK     + +   + 
Sbjct: 655 NIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKIN 714

Query: 584 MLIRHMNETAYEPDIDCLIHDLE 606
            L + M +  Y+PD  C +HD++
Sbjct: 715 ALSKEMEKKGYKPDTTCALHDVD 737



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 131/453 (28%), Positives = 233/453 (51%), Gaps = 5/453 (1%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P   +I    +I  +   G + +AR LFD M ER  VSWT++I GY   N   +A+ ++
Sbjct: 69  MPAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLY 128

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVY-AT 159
            +M R  + P+  TL ++L     +++ +    +H   IK G E ++ V NSL+D Y  T
Sbjct: 129 ADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKT 188

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
            C+ +  A  +F  M  K+ V++ +L+TGY++ G     + +F E+   G++ + ++F+ 
Sbjct: 189 HCLYL--ASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAA 246

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
            + A        FG+ +H  V+K  F  N+ V N++LD Y + D + +  + F EM E D
Sbjct: 247 LLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELD 306

Query: 280 LITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
            I++N +I  Y  +G   E  ++F K++  RF    F F ++++   +   L  G+Q+H 
Sbjct: 307 GISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHC 366

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
             +  G +    + NAL+DMYAKC    ++QKIF  ++ +  V WT+M+  Y   G  +E
Sbjct: 367 QAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEE 426

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVD 458
            I +F +M ++GV  D+  F ++L AC++   +  G +    +       N      ++D
Sbjct: 427 GINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLD 486

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
              + G + +A +    MP +   S W  L+ A
Sbjct: 487 TYAKCGCMTDAIKSFGEMPERNSVS-WNALISA 518



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 130/255 (50%), Gaps = 18/255 (7%)

Query: 233 GKLIHAAVIKHGFGSNLPVMNSI-LDM----YCRFDCLSDANQYFDEMTEKDLITWNTII 287
           G L+HA    H     +P  N+I L+M    + +F  LS A + FD M E+  ++W  +I
Sbjct: 57  GDLVHA----HQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILI 112

Query: 288 AGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            GY +S  S E   +++ M+     P+  T  ++++    L   +   Q+H  +++ G +
Sbjct: 113 GGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYE 172

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            NL + N+L+D Y K   +  + ++F  M ++D VT+ S+M GY   G  +EAIELF E+
Sbjct: 173 YNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLEL 232

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDY----NVNPNKEIYGCVVDLLGR 462
             SG++P    F A+L+A    GL D   K+ + ++ +    N   N  +   ++D   +
Sbjct: 233 HNSGIKPSDFTFAALLSAA--VGLDDT--KFGQQVHGFVLKTNFVWNVFVGNALLDYYSK 288

Query: 463 AGRVKEAYELIKSMP 477
             +V E  +L   MP
Sbjct: 289 HDQVDEVGKLFXEMP 303


>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 652

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 194/559 (34%), Positives = 310/559 (55%), Gaps = 22/559 (3%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A N++ S+     +  AR LFD  P+  V  W  +  GY     + +   +F +M   +
Sbjct: 101 VAPNVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMD 160

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V PN FT   VLK+C  + +      +H   IK GLEG+ +V  +L+DVY+    ++ +A
Sbjct: 161 VRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGG-RAIGSA 219

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             +F  M  +N V+WT++I+GY         + + + +     E +   ++I V     +
Sbjct: 220 YKLFVGMLERNIVAWTSMISGYILCNR----VALARRLFDLAPERDVVLWNIMV-----S 270

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVM-----NSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           G++  G +  A          +P       N++L+ Y     +    Q F+EM E+++ +
Sbjct: 271 GYIEIGDMKAA----RKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFS 326

Query: 283 WNTIIAGYEKSGSS-ECLNMFSKMKSERFS-PNCFTFTSIIAACATLAALSCGQQVHAGI 340
           WN +I GY  +G   E L  F +M  +    PN  T  ++++ACA L AL  G+ VH   
Sbjct: 327 WNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYA 386

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
              G  G++ + NALIDMY+KCG I ++ ++F  M  +DL+TW SM+ G   HG G +A+
Sbjct: 387 ATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADAL 446

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDL 459
            LF +M  +G +PD I F+ VL +C+H GLV+EG  YF SM N+Y++ P  E YGC+VDL
Sbjct: 447 TLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDL 506

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
            GRAG +  A E +K MP + D  +W  LLGAC+ ++  +L +LA  +++ L+P     Y
Sbjct: 507 FGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELALQKLIVLEPKNPANY 566

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVY 579
           ++LSNIY   G+W++ A+ + +MR  GSKK  G S IEV D V  F + D+  S ++ +Y
Sbjct: 567 VLLSNIYGDLGRWKDVARLKILMRDTGSKKLPGCSLIEVNDSVVEFYSLDERHSQSKEIY 626

Query: 580 GVLEMLIRHMNETAYEPDI 598
           GVL+ L++ +    YEP++
Sbjct: 627 GVLKGLMKLLRSFGYEPNM 645



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 135/277 (48%), Gaps = 15/277 (5%)

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
           F   +R+C +   V+  + + A +I HGF  N  V  +++  +     ++ A   FD   
Sbjct: 70  FISLLRSCKT---VALLQKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFP 126

Query: 277 EKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ 335
           +  +  WN I  GY   +   E + +F KMKS    PNCFTF  ++ +CA + A   G++
Sbjct: 127 DPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEE 186

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
           +H  +++ GL+GN  +A  LID+Y+    I  + K+F  M +R++V WTSM+ GY     
Sbjct: 187 IHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNR 246

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG-LKYFKSMNDYNVNPNKEIYG 454
              A  LFD      + P+R V   VL     +G ++ G +K  + + D     +   + 
Sbjct: 247 VALARRLFD------LAPERDV---VLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWN 297

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
            +++     G V+   +L + MP +   S W  L+G 
Sbjct: 298 TMLNGYANNGDVEACEQLFEEMPERNVFS-WNGLIGG 333



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/380 (21%), Positives = 168/380 (44%), Gaps = 13/380 (3%)

Query: 117 SVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW 176
           S+L++CK +  L     V    I  G + + YV  +++  +      M +AR +F+    
Sbjct: 72  SLLRSCKTVALLQK---VQAQIITHGFQYNGYVAPNVVTSWVGL-KQMAHARHLFDHFPD 127

Query: 177 KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLI 236
                W  +  GY H+      + +F +M    V  N ++F + +++CA  G    G+ I
Sbjct: 128 PKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEI 187

Query: 237 HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS 296
           H  VIK G   N  V  +++D+Y     +  A + F  M E++++ W ++I+GY      
Sbjct: 188 HCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRV 247

Query: 297 ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALI 356
                   +  ER   +   +  +++    +  +   +++   +  R    +    N ++
Sbjct: 248 ALARRLFDLAPER---DVVLWNIMVSGYIEIGDMKAARKLFDTMPYR----DTMSWNTML 300

Query: 357 DMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG-VRPDR 415
           + YA  G++   +++F EM +R++ +W  ++ GY  +G   E +  F  M+  G V P+ 
Sbjct: 301 NGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPND 360

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKS 475
              + VL+AC+  G +D G              +  +   ++D+  + G ++ A E+ +S
Sbjct: 361 ATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFES 420

Query: 476 MPFKPDESVWGPLLGACKEH 495
           M  K D   W  ++     H
Sbjct: 421 MDLK-DLITWNSMICGLATH 439



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 125/283 (44%), Gaps = 35/283 (12%)

Query: 40  LIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVM---------------- 83
           L P+   +L   ++  Y + G ++ AR LFD MP RD +SW  M                
Sbjct: 256 LAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQL 315

Query: 84  ---------------IAGYTSFNCHNQAWTVFVEM-VRNEVNPNAFTLSSVLKACKGMKS 127
                          I GY    C  +    F  M +   V PN  TL +VL AC  + +
Sbjct: 316 FEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGA 375

Query: 128 LSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLIT 187
           L     VH  A   G +GSIYV N+L+D+Y+ C + ++NA  VF  M  K+ ++W ++I 
Sbjct: 376 LDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGL-IENAMEVFESMDLKDLITWNSMIC 434

Query: 188 GYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG-KLIHAAVIKHGFG 246
           G A  G G   L +F +M + G + +  +F   + +C   G V  G    ++ V ++   
Sbjct: 435 GLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIA 494

Query: 247 SNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLITWNTIIA 288
             +     ++D++ R   L  A ++   M  E D + W  ++ 
Sbjct: 495 PQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLG 537


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 180/565 (31%), Positives = 314/565 (55%), Gaps = 22/565 (3%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + + + LI +Y    L+ +A  +F+ +  +D V WT M++ Y+  +C   A+        
Sbjct: 197 AFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRC------ 250

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
                 + +L ++  A +G         +HG AIK   +   +V  +L+D+YA C   + 
Sbjct: 251 ----AQSCSLLAISCARQG---------IHGCAIKTLNDTEPHVGGALLDMYAKCG-DIK 296

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +ARL F  + + + +  + +I+ YA S        +F  ++   V  N YS S  ++AC 
Sbjct: 297 DARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACT 356

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           +   + FGK IH   IK G  S+L V N+++D Y + + +  + + F  + + + ++WNT
Sbjct: 357 NMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNT 416

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           I+ G+ +SG   E L++F +M++ +      T++S++ ACA+ A++    Q+H  I +  
Sbjct: 417 IVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKST 476

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
            + +  + N+LID YAKCG I D+ K+F  + +RD+++W +++ GY  HG   +A+ELFD
Sbjct: 477 FNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFD 536

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRA 463
            M KS V  + I F+A+L+ C   GLV+ GL  F SM  D+ + P+ E Y C+V LLGRA
Sbjct: 537 RMNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRA 596

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           GR+ +A + I  +P  P   VW  LL +C  H+   LG+ +A ++L+++P    TY++LS
Sbjct: 597 GRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLS 656

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           N+YAA G  ++ A  RK MR +G +K  G+SW+E++ ++  F          + +  +LE
Sbjct: 657 NMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLE 716

Query: 584 MLIRHMNETAYEPDIDCLIHDLEGE 608
            L    +   Y PDI+ ++HD++ E
Sbjct: 717 WLNLKTSREGYIPDINVVLHDVDKE 741



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 117/448 (26%), Positives = 214/448 (47%), Gaps = 22/448 (4%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108
           A  L+  Y   G +  AR LFD MPER++VS+  ++  +        A  +F  +     
Sbjct: 99  ANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGH 158

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
             N F L+++LK    M +   A  VH  A K G + + +V + L+D Y+ C +  D A 
Sbjct: 159 EVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSD-AE 217

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            VFN +  K+ V WT +++ Y+ +               E       S S+   +CA  G
Sbjct: 218 HVFNGIVRKDAVVWTAMVSCYSEND------------CPENAFRCAQSCSLLAISCARQG 265

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
                  IH   IK    +   V  ++LDMY +   + DA   F+ +   D+I  + +I+
Sbjct: 266 -------IHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMIS 318

Query: 289 GYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
            Y +S  +E    +F ++      PN ++ +S++ AC  +  L  G+Q+H   ++ G + 
Sbjct: 319 RYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHES 378

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           +L + NAL+D YAKC ++  S KIFS + D + V+W ++++G+   G G+EA+ +F EM 
Sbjct: 379 DLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQ 438

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
            + +   ++ + +VL AC+    +    +   S+     N +  I   ++D   + G ++
Sbjct: 439 AAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIR 498

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEH 495
           +A ++ + +  + D   W  ++     H
Sbjct: 499 DALKVFQHL-MERDIISWNAIISGYALH 525



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 153/327 (46%), Gaps = 23/327 (7%)

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEG--SIYVENSLMDVYATCCISMDNAR 168
           ++F  +  L+ C           VHG  ++ G  G   ++  N L+++Y      + +AR
Sbjct: 58  DSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLG-PLASAR 116

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            +F+ M  +N VS+ TL+  +A  G+      +F+ +  EG E+N +  +  ++   +  
Sbjct: 117 RLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMD 176

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
                  +H+   K G   N  V + ++D Y     +SDA   F+ +  KD + W  +++
Sbjct: 177 AAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVS 236

Query: 289 GYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ-VHAGIVRRGLDG 347
            Y ++   E  N F      R + +C           +L A+SC +Q +H   ++   D 
Sbjct: 237 CYSENDCPE--NAF------RCAQSC-----------SLLAISCARQGIHGCAIKTLNDT 277

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
              +  AL+DMYAKCG+I D++  F  +   D++  + M+  Y      ++A ELF  ++
Sbjct: 278 EPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLM 337

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEG 434
           +S V P+     +VL AC++   +D G
Sbjct: 338 RSSVLPNEYSLSSVLQACTNMVQLDFG 364


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 197/601 (32%), Positives = 318/601 (52%), Gaps = 28/601 (4%)

Query: 20  PIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEG-----------------LI 62
           P   ++  +  ++ +++DP  +P+    L   LIKS    G                 L+
Sbjct: 11  PTPGRAGPAPPRAPLRADPSYLPQ----LHAALIKSGELTGSAKSFHSLLEAAAASPTLL 66

Query: 63  EEARTLFDEMPERDVVS--WTVMIAGYTSFNCHNQAWTVFVEMVR--NEVNPNAFTLSSV 118
             A +LF   P   + +  + V++  +        A  +F+EM+   +    +  T +  
Sbjct: 67  PYAVSLFRLGPRPPLSTPCYNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACA 126

Query: 119 LKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKN 178
           LK+C  M +L     V   A+K GL    +V +SL+ +YA+C   +  ARLVF+  +   
Sbjct: 127 LKSCSRMCALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCG-DVAAARLVFDAAEESG 185

Query: 179 DVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHA 238
            V W  ++  Y  +G+    + +FK ML  GV  +  +    V AC   G    GK +  
Sbjct: 186 VVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAG 245

Query: 239 AVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SE 297
            V + G   N  ++ +++DMY +   +  A + FD M  +D++ W+ +I+GY ++    E
Sbjct: 246 HVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCRE 305

Query: 298 CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALID 357
            L +FS+M+  R  PN  T  S+++ACA L AL  G+ VH+ + R+ L     L  AL+D
Sbjct: 306 ALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVD 365

Query: 358 MYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIV 417
            YAKCG I D+ + F  M  ++  TWT+++ G   +G G+EA+ELF  M ++G+ P  + 
Sbjct: 366 FYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVT 425

Query: 418 FMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
           F+ VL ACSH+ LV+EG ++F SM  DY + P  E YGC+VDLLGRAG V EAY+ I++M
Sbjct: 426 FIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTM 485

Query: 477 PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFA 536
           P +P+  +W  LL +C  HR   +G+ A  +++ L P+  G Y++LSNIYA+ G+W++ A
Sbjct: 486 PIEPNAVIWRALLSSCAVHRNVGIGEEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAA 545

Query: 537 KFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEP 596
             RK M+  G +K  G S IE+   V  F A D      + +Y  +E +I  +    Y P
Sbjct: 546 MVRKEMKDRGIEKTPGCSLIELDGVVFEFFAEDSDHPELREIYQKVEEMIGRIKVAGYVP 605

Query: 597 D 597
           +
Sbjct: 606 N 606


>gi|359485832|ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1736

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 195/566 (34%), Positives = 312/566 (55%), Gaps = 13/566 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +   L+  Y   G I +A ++F+ M E+D VSW  +I+G     C   A   F  M R  
Sbjct: 424 IGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFHRMRRTG 483

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA-TCCISMDN 166
             P+ FTL S L +C  +  +     +H   +K GL+  + V N+L+ +YA T C +   
Sbjct: 484 SMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFT--E 541

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYG-GLGVFKEMLLEGVEMNPYSFSIAVRACA 225
              VF+ M   + VSW ++I   + S       +  F +M+  G  ++  +F   + A +
Sbjct: 542 CLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVS 601

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE-KDLITWN 284
           S         IHA V+K+    +  + N++L  Y +   +++  + F  M+E +D ++WN
Sbjct: 602 SLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWN 661

Query: 285 TIIAGY---EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           ++I+GY   E    +  L  F   K +R   + FTF +I++ACA++A L  G +VHA  +
Sbjct: 662 SMISGYIHNELLHKAMDLVWFMMQKGQRL--DSFTFATILSACASVATLERGMEVHACGI 719

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           R  L+ ++ + +AL+DMY+KCG I  + + F  M  R++ +W SM+ GY  HGHG++A++
Sbjct: 720 RACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALK 779

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLL 460
           LF  M+  G  PD + F+ VL+ACSH G V+EG ++FKSM++ Y ++P  E + C+VDLL
Sbjct: 780 LFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLL 839

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGAC--KEHRLPNLGKLAALRVLDLKPNMMGT 518
           GRAG++ E  + I SMP KP+  +W  +LGAC     R   LG+ AA  +L+L+P     
Sbjct: 840 GRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVN 899

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
           Y++L+N+YA+  KWE+ AK R  M+    KKE G SW+ ++D V  F+A DK+      +
Sbjct: 900 YVLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDLI 959

Query: 579 YGVLEMLIRHMNETAYEPDIDCLIHD 604
           Y  L  L R M +  Y P     + D
Sbjct: 960 YDKLRELNRKMRDAGYIPQTKYALFD 985



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 131/465 (28%), Positives = 236/465 (50%), Gaps = 22/465 (4%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   L+  LI  Y   G +  A+ LFDEM  R++V+W  +I+GYT     ++A   F +M
Sbjct: 104 GNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDM 163

Query: 104 VRNEVNPNAFTLSSVLKACK--GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
           VR    PN +   S L+AC+  G         +HG+  K      + V N L+ +Y +C 
Sbjct: 164 VRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCL 223

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGV----EMNPYSF 217
            S ++AR VF+ +  +N +SW ++I+ Y+  G+      +F  M  EG+    + N Y+F
Sbjct: 224 DSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTF 283

Query: 218 -SIAVRACASTGWVSFG----KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYF 272
            S+   AC+S   V FG    + + A V K GF  +L V ++++  + RF    DA   F
Sbjct: 284 GSLITTACSS---VDFGLCVLEQMLARVEKSGFLQDLYVSSALVSGFARFGLTDDAKNIF 340

Query: 273 DEMTEKDLITWNTIIAGYEKSGSSECL-NMFSKMKSERFSPNCFTFTSIIAACATLAALS 331
           ++M  +++++ N ++ G  K    E    +F +MK +    N  ++  +++A +  + L 
Sbjct: 341 EQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMK-DLVGINSDSYVVLLSAFSEFSVLE 399

Query: 332 ----CGQQVHAGIVRRGLDGN-LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSM 386
                G++VHA ++R GL+ N +A+ N L++MYAK G I+D+  +F  M ++D V+W S+
Sbjct: 400 EGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSL 459

Query: 387 MIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV 446
           + G   +   ++A E F  M ++G  P     ++ L++C+  G +  G +         +
Sbjct: 460 ISGLDQNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGL 519

Query: 447 NPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
           + +  +   ++ L    G   E  ++   MP + D+  W  ++GA
Sbjct: 520 DTDVSVSNALLALYAETGCFTECLKVFSLMP-EYDQVSWNSVIGA 563



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 115/418 (27%), Positives = 216/418 (51%), Gaps = 29/418 (6%)

Query: 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFND 173
           T  S++   +G      A  +H  +IK G  G++++ N+L+++Y      + +A+ +F++
Sbjct: 73  TFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIG-DLGSAQKLFDE 131

Query: 174 MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG--WVS 231
           M  +N V+W  LI+GY  +G        F++M+  G   N Y+F  A+RAC  +G     
Sbjct: 132 MSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCK 191

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCR-FDCLSDANQYFDEMTEKDLITWNTIIAGY 290
            G  IH  + K  +GS++ V N ++ MY    D  +DA   FD +  ++ I+WN+II+ Y
Sbjct: 192 LGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVY 251

Query: 291 EKSGSS-ECLNMFSKMKSE----RFSPNCFTFTSII-AACATLA-ALSCGQQVHAGIVRR 343
            + G +    ++FS M+ E     F PN +TF S+I  AC+++   L   +Q+ A + + 
Sbjct: 252 SRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITTACSSVDFGLCVLEQMLARVEKS 311

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G   +L +++AL+  +A+ G   D++ IF +M  R++V+   +M+G      G+ A ++F
Sbjct: 312 GFLQDLYVSSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVF 371

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDY----NVNPNKEIYG-CVVD 458
            EM K  V  +   ++ +L+A S   +++EG +  + ++ +     +N NK   G  +V+
Sbjct: 372 HEM-KDLVGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVN 430

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA-----CKE------HRLPNLGKLAA 505
           +  ++G + +A  + + M  K D   W  L+       C E      HR+   G + +
Sbjct: 431 MYAKSGAIADACSVFELMVEK-DSVSWNSLISGLDQNECSEDAAESFHRMRRTGSMPS 487



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 153/319 (47%), Gaps = 25/319 (7%)

Query: 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEK 292
            + +H   IK+GF  NL + N+++++Y R   L  A + FDEM+ ++L+TW  +I+GY +
Sbjct: 90  ARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQ 149

Query: 293 SGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSC--GQQVHAGIVRRGLDGNL 349
           +G   E    F  M    F PN + F S + AC       C  G Q+H  I +     ++
Sbjct: 150 NGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDV 209

Query: 350 ALANALIDMYAKC-GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
            + N LI MY  C  + +D++ +F  +  R+ ++W S++  Y   G    A +LF  M K
Sbjct: 210 VVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQK 269

Query: 409 SGV----RPDRIVFMAVL-TACSHAGLVDEGLKYFKSM----NDYNVNPNKEIYGCVVDL 459
            G+    +P+   F +++ TACS    VD GL   + M           +  +   +V  
Sbjct: 270 EGLGFSFKPNEYTFGSLITTACSS---VDFGLCVLEQMLARVEKSGFLQDLYVSSALVSG 326

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG-- 517
             R G   +A  + + M  +   S+ G ++G  K+ +    G+ AA +V     +++G  
Sbjct: 327 FARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQ----GE-AAAKVFHEMKDLVGIN 381

Query: 518 --TYIILSNIYAAEGKWEE 534
             +Y++L + ++     EE
Sbjct: 382 SDSYVVLLSAFSEFSVLEE 400



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 38/76 (50%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++ + L+  Y   G I+ A   F+ MP R+V SW  MI+GY       +A  +F  M+ +
Sbjct: 728 VVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLD 787

Query: 107 EVNPNAFTLSSVLKAC 122
              P+  T   VL AC
Sbjct: 788 GQPPDHVTFVGVLSAC 803


>gi|357162206|ref|XP_003579338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g20730-like [Brachypodium distachyon]
          Length = 558

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 181/534 (33%), Positives = 306/534 (57%), Gaps = 10/534 (1%)

Query: 27  QSVKKSSIQSDPPLIPKGPSI-LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIA 85
           +SV    I S  P     P + ++T L+  Y   G +  AR +FD MP R VVSWT M++
Sbjct: 31  RSVHHQIIASAAP-----PDLHMSTKLVIFYAKHGDVAAARKVFDGMPHRSVVSWTAMVS 85

Query: 86  GYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEG 145
           GY+      +A  +F  M+ + V PN FT  SV  AC G   + +   VH    K    G
Sbjct: 86  GYSRNGQTREALDLFTLMLASGVRPNQFTYGSVASACAGAGCVRSGEQVHACVAKGRFVG 145

Query: 146 SIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEM 205
            ++V+++LMD++  C   +D  +L F +M+ K+ V+W  L+ G          LG+   M
Sbjct: 146 DVFVQSALMDMHLRCGSVVDAMQL-FAEMERKDVVAWNALLRGLVERAQYGDALGLLPSM 204

Query: 206 LLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCL 265
           L   +  + ++F  A++AC +   ++  +LIH  +IK G+     V+ SI+D Y +   L
Sbjct: 205 LRGAMLPDHFTFGSALKACGAVSVLANVELIHTCIIKLGYWGEKVVIGSIIDAYAKCRGL 264

Query: 266 SDANQYFDEMTEKDLITWNTIIAGY--EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAA 323
           S A   +D + E DL++   +I+GY  +++ S + + +F K+  +    +    +S++  
Sbjct: 265 SSARLIYDSICEPDLVSSTALISGYSMDRNHSEDAMELFCKIHRKGLRIDGVLLSSLLGL 324

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTW 383
           CA +A+L  G Q+HA + +R    ++AL NA++DMYAK G  +D+++ F EM  R++V+W
Sbjct: 325 CANVASLRFGTQIHAYMCKRQPMTDVALDNAVVDMYAKAGEFADARRAFDEMPYRNVVSW 384

Query: 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS-MN 442
           TS++   G +G G++A+ LFD MV+ GV+P+ + F+++L+AC H+GL  +G++YF S M+
Sbjct: 385 TSLITACGKNGFGEDAVSLFDRMVEDGVKPNDVTFLSLLSACGHSGLTSKGMEYFTSMMS 444

Query: 443 DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGK 502
            Y ++P  E Y   +DLL R G++K+A++L++++  +P+ S++G +LGACK H    LG+
Sbjct: 445 KYGIDPRAEHYSSAIDLLARGGQLKDAWKLVQNIDIEPNSSMFGAMLGACKTHGSMPLGE 504

Query: 503 LAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWI 556
            AA  +  + P     Y +L+N+YA    WE+  + RK+M      K  G S I
Sbjct: 505 TAAKNLFTIAPESSVHYAVLANMYAESSLWEDAQRTRKLMAETSGGKVAGCSVI 558



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 110/194 (56%), Gaps = 1/194 (0%)

Query: 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEK 292
           G+ +H  +I      +L +   ++  Y +   ++ A + FD M  + +++W  +++GY +
Sbjct: 30  GRSVHHQIIASAAPPDLHMSTKLVIFYAKHGDVAAARKVFDGMPHRSVVSWTAMVSGYSR 89

Query: 293 SGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLAL 351
           +G + E L++F+ M +    PN FT+ S+ +ACA    +  G+QVHA + +    G++ +
Sbjct: 90  NGQTREALDLFTLMLASGVRPNQFTYGSVASACAGAGCVRSGEQVHACVAKGRFVGDVFV 149

Query: 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411
            +AL+DM+ +CG++ D+ ++F+EM  +D+V W +++ G        +A+ L   M++  +
Sbjct: 150 QSALMDMHLRCGSVVDAMQLFAEMERKDVVAWNALLRGLVERAQYGDALGLLPSMLRGAM 209

Query: 412 RPDRIVFMAVLTAC 425
            PD   F + L AC
Sbjct: 210 LPDHFTFGSALKAC 223



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 94/173 (54%), Gaps = 3/173 (1%)

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           + S++ +C  ++    G+ VH  I+      +L ++  L+  YAK G+++ ++K+F  M 
Sbjct: 16  YYSLLQSC--MSCFRRGRSVHHQIIASAAPPDLHMSTKLVIFYAKHGDVAAARKVFDGMP 73

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
            R +V+WT+M+ GY  +G  +EA++LF  M+ SGVRP++  + +V +AC+ AG V  G +
Sbjct: 74  HRSVVSWTAMVSGYSRNGQTREALDLFTLMLASGVRPNQFTYGSVASACAGAGCVRSGEQ 133

Query: 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
               +       +  +   ++D+  R G V +A +L   M  K D   W  LL
Sbjct: 134 VHACVAKGRFVGDVFVQSALMDMHLRCGSVVDAMQLFAEMERK-DVVAWNALL 185


>gi|310656753|gb|ADP02188.1| PPR domain-containing protein [Triticum aestivum]
          Length = 788

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 194/627 (30%), Positives = 325/627 (51%), Gaps = 68/627 (10%)

Query: 27  QSVKKSSIQSDPPL---IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVM 83
           + VK   I S   L   +P    +  T ++ +    G + EA  L+++ P   V  +T  
Sbjct: 158 EHVKAGDIASARRLFDGMPDRTVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTAT 217

Query: 84  IAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGL 143
           I+G+     H+ A  VF +M+   V PN  T+  ++KAC G      A  + G+AIK   
Sbjct: 218 ISGFVRNELHHNALGVFRKMLSCRVRPNGITIVCMIKACVGAGEFGLALSIVGLAIKSNF 277

Query: 144 -EGSIYVENSL-------------------------------MDVYATCCISMDNARLVF 171
            E SI V+NSL                               +DVY+     +D AR V 
Sbjct: 278 FESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESG-DLDGARRVL 336

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           + M  +N+VSW TLI  +   GN    + ++ +ML +G   N   FS  + ACAS   + 
Sbjct: 337 DAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACASLEDLR 396

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            G  IHA  +K G  +N+ V  S++DMYC+ +   DA   FD + +K+++ WN++++GY 
Sbjct: 397 GGARIHARSLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTIFDTLPQKNIVCWNSLVSGYS 456

Query: 292 KSGS-SECLNMFSKMKSERFS-------------------------------PNCFTFTS 319
            +G   E + +F KM +   +                               P   TF+S
Sbjct: 457 YNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALKSFNAMLASGQVPGEITFSS 516

Query: 320 IIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD 379
           ++ ACA L +L  G+  HA  ++ G++ ++ +  AL DMYAK G++  S+++F +M +R+
Sbjct: 517 VLLACANLCSLVTGKMAHAKTIKLGIEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERN 576

Query: 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439
            VTWT+M+ G   +G  +E+I LF++M+ +G+ P+   F+A+L ACSH GLV++ + YF 
Sbjct: 577 DVTWTAMIQGLAENGFAEESILLFEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHYFD 636

Query: 440 SMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN 499
            M    ++P ++ Y C+VD+L RAGR+ EA  L+   P K + + W  LL AC  +R   
Sbjct: 637 KMQALGISPKEKHYTCMVDVLARAGRLAEAEALLMKTPSKSEANSWAALLSACNTYRNEE 696

Query: 500 LGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVR 559
           + + AA R+ +L  +    Y++LSN+YA+ G+W++ A+ R +M+G   KK+ G SW++VR
Sbjct: 697 IAERAAKRLHELAKDNTAGYVLLSNMYASCGRWKDAARIRVLMKGTTLKKDGGCSWVQVR 756

Query: 560 DKVCGFIANDKMGSHTQYVYGVLEMLI 586
            +   F + +     +  +  +L++L+
Sbjct: 757 GQYHAFFSWEAKHPLSMEIDEILDLLM 783



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 89/207 (42%), Gaps = 20/207 (9%)

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
           ++  + K G+I+ ++++F  M DR +V++T+M+      G   EA+EL+++     V   
Sbjct: 155 MVSEHVKAGDIASARRLFDGMPDRTVVSYTTMVDALMKRGRVAEAVELYEQCPSGSV--- 211

Query: 415 RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL-- 472
              F A ++      L    L  F+ M    V PN     C++     AG    A  +  
Sbjct: 212 -AFFTATISGFVRNELHHNALGVFRKMLSCRVRPNGITIVCMIKACVGAGEFGLALSIVG 270

Query: 473 --IKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVL--DLKPNMMGTYIILSNIYAA 528
             IKS  F+    V   L+          +G  AA R +  ++    + ++  L ++Y+ 
Sbjct: 271 LAIKSNFFESSIEVQNSLITL-----YLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSE 325

Query: 529 EGKWEEFAKFRKIMRGMGSKKEVGMSW 555
            G   +    R+++  M  + EV  SW
Sbjct: 326 SG---DLDGARRVLDAMPERNEV--SW 347


>gi|356521639|ref|XP_003529461.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial-like [Glycine max]
          Length = 699

 Score =  338 bits (867), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 187/521 (35%), Positives = 302/521 (57%), Gaps = 10/521 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERD-VVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
           S + T L+ +Y     ++EA   FDE+ E D VVSWT MI  Y   +C  +  T+F  M 
Sbjct: 167 SFVLTCLVDAYAKFARVDEATRAFDEIHENDDVVSWTSMIVAYVQNDCAREGLTLFNRMR 226

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
              V+ N FT+ S++ AC  +  L     VHG  IK G+  + Y+  SL+++Y  C  ++
Sbjct: 227 EAFVDGNEFTVGSLVSACTKLNWLHQGKWVHGFVIKNGICVNSYLTTSLLNMYVKCG-NI 285

Query: 165 DNARLVFNDMKW----KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
            +A  VF++       ++ VSWT +I GY+  G  +  L +FK+    G+  N  + S  
Sbjct: 286 QDACKVFDESSSSSYDRDLVSWTAMIVGYSQRGYPHLALELFKDKKWSGILPNSVTVSSL 345

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           + +CA  G    GKL+H   +K G   + PV N+++DMY +   +SDA   F+ M EKD+
Sbjct: 346 LSSCAQLGNSVMGKLLHGLAVKCGLDDH-PVRNALVDMYAKCGVVSDARCVFEAMLEKDV 404

Query: 281 ITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           ++WN+II+G+ +SG + E LN+F +M  E FSP+  T   I++ACA+L  L  G  VH  
Sbjct: 405 VSWNSIISGFVQSGEAYEALNLFRRMGLELFSPDAVTVVGILSACASLGMLHLGCSVHGL 464

Query: 340 IVRRGLD-GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
            ++ GL   ++ +  AL++ YAKCG+   ++ +F  M +++ VTW +M+ GYG  G G  
Sbjct: 465 ALKDGLVVSSIYVGTALLNFYAKCGDARAARMVFDSMGEKNAVTWGAMIGGYGMQGDGNG 524

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVV 457
           ++ LF +M++  V P+ +VF  +L ACSH+G+V EG + F  M  + N  P+ + Y C+V
Sbjct: 525 SLTLFRDMLEELVEPNEVVFTTILAACSHSGMVGEGSRLFNLMCGELNFVPSMKHYACMV 584

Query: 458 DLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG 517
           D+L RAG ++EA + I+ MP +P  SV+G  L  C  H    LG  A  ++L+L P+   
Sbjct: 585 DMLARAGNLEEALDFIERMPVQPSVSVFGAFLHGCGLHSRFELGGAAIKKMLELHPDEAC 644

Query: 518 TYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEV 558
            Y+++SN+YA++G+W    + R++++  G  K  G S +E+
Sbjct: 645 YYVLVSNLYASDGRWGMVKQVREMIKQRGLNKVPGCSSVEM 685



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 129/446 (28%), Positives = 219/446 (49%), Gaps = 15/446 (3%)

Query: 56  YFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP---NA 112
           Y   G +  AR +F+ +P RD+  + VMI  Y   N           ++R  ++P   + 
Sbjct: 75  YASFGQLRHARKIFNHLPTRDLYCFKVMIRAYF-LNDTPSGVVSLYRLMRLSLHPTPHDY 133

Query: 113 FTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFN 172
              S V K+C   +      + H   +K  L    +V   L+D YA     +D A   F+
Sbjct: 134 VLFSIVFKSCAESRDFQTLTITHCHFVKS-LPSDSFVLTCLVDAYAKFA-RVDEATRAFD 191

Query: 173 DMKWKND-VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           ++   +D VSWT++I  Y  +     GL +F  M    V+ N ++    V AC    W+ 
Sbjct: 192 EIHENDDVVSWTSMIVAYVQNDCAREGLTLFNRMREAFVDGNEFTVGSLVSACTKLNWLH 251

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT----EKDLITWNTII 287
            GK +H  VIK+G   N  +  S+L+MY +   + DA + FDE +    ++DL++W  +I
Sbjct: 252 QGKWVHGFVIKNGICVNSYLTTSLLNMYVKCGNIQDACKVFDESSSSSYDRDLVSWTAMI 311

Query: 288 AGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            GY + G     L +F   K     PN  T +S++++CA L     G+ +H   V+ GLD
Sbjct: 312 VGYSQRGYPHLALELFKDKKWSGILPNSVTVSSLLSSCAQLGNSVMGKLLHGLAVKCGLD 371

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            +  + NAL+DMYAKCG +SD++ +F  M ++D+V+W S++ G+   G   EA+ LF  M
Sbjct: 372 DH-PVRNALVDMYAKCGVVSDARCVFEAMLEKDVVSWNSIISGFVQSGEAYEALNLFRRM 430

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLK-YFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
                 PD +  + +L+AC+  G++  G   +  ++ D  V  +  +   +++   + G 
Sbjct: 431 GLELFSPDAVTVVGILSACASLGMLHLGCSVHGLALKDGLVVSSIYVGTALLNFYAKCGD 490

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGA 491
            + A  +  SM  K +   WG ++G 
Sbjct: 491 ARAARMVFDSMGEK-NAVTWGAMIGG 515



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/275 (20%), Positives = 129/275 (46%), Gaps = 8/275 (2%)

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
           K +HA+ + HG  ++L +   +L +Y  F  L  A + F+ +  +DL  +  +I  Y  +
Sbjct: 50  KTLHASFLIHGLTNDLLLSTKLLSLYASFGQLRHARKIFNHLPTRDLYCFKVMIRAYFLN 109

Query: 294 GS-SECLNMFSKMK-SERFSPNCFTFTSII-AACATLAALSCGQQVHAGIVRRGLDGNLA 350
            + S  ++++  M+ S   +P+ +   SI+  +CA           H   V + L  +  
Sbjct: 110 DTPSGVVSLYRLMRLSLHPTPHDYVLFSIVFKSCAESRDFQTLTITHCHFV-KSLPSDSF 168

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
           +   L+D YAK   + ++ + F E+ +  D+V+WTSM++ Y  +   +E + LF+ M ++
Sbjct: 169 VLTCLVDAYAKFARVDEATRAFDEIHENDDVVSWTSMIVAYVQNDCAREGLTLFNRMREA 228

Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
            V  +     ++++AC+    + +G      +    +  N  +   ++++  + G +++A
Sbjct: 229 FVDGNEFTVGSLVSACTKLNWLHQGKWVHGFVIKNGICVNSYLTTSLLNMYVKCGNIQDA 288

Query: 470 YELI---KSMPFKPDESVWGPLLGACKEHRLPNLG 501
            ++     S  +  D   W  ++    +   P+L 
Sbjct: 289 CKVFDESSSSSYDRDLVSWTAMIVGYSQRGYPHLA 323



 Score = 45.8 bits (107), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 32/225 (14%)

Query: 274 EMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG 333
            +T K  + WN++   Y   G           K +  SP  F  + +   C  L +L   
Sbjct: 9   RVTTKPRLHWNSL---YHHHGQ----------KQQPPSPPTFYLSRL---CTNLPSL--- 49

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
           + +HA  +  GL  +L L+  L+ +YA  G +  ++KIF+ +  RDL  +  M+  Y  +
Sbjct: 50  KTLHASFLIHGLTNDLLLSTKLLSLYASFGQLRHARKIFNHLPTRDLYCFKVMIRAYFLN 109

Query: 394 GHGKEAIELFDEMVKSGVRP---DRIVFMAVLTACSHA----GLVDEGLKYFKSMNDYNV 446
                 + L+  +++  + P   D ++F  V  +C+ +     L      + KS+     
Sbjct: 110 DTPSGVVSLY-RLMRLSLHPTPHDYVLFSIVFKSCAESRDFQTLTITHCHFVKSLPS--- 165

Query: 447 NPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
             +  +  C+VD   +  RV EA      +    D   W  ++ A
Sbjct: 166 --DSFVLTCLVDAYAKFARVDEATRAFDEIHENDDVVSWTSMIVA 208


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  338 bits (867), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 177/563 (31%), Positives = 310/563 (55%), Gaps = 4/563 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++  +L+ +Y     +  A  LF  M  +D V++  ++ GY++   + +A  +F+E+  +
Sbjct: 176 MVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNS 235

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            + P+ FT +++L A  G+        VHG  +K     +++V N+L+D Y+     +D 
Sbjct: 236 GIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKH-DQVDE 294

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
              +F +M   + +S+  +IT YA +G       +F+++     +   + F+  +    S
Sbjct: 295 VGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATS 354

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
           +  +  G+ IH   I  G      V N+++DMY + +   +A + FD +  K  + W  +
Sbjct: 355 SLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAM 414

Query: 287 IAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+ Y + G   E +N+FS M+      +  TF SI+ ACA LA++S G+Q+H+ ++R G 
Sbjct: 415 ISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSGF 474

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             N+   +AL+D YAKCG ++D+ K F EM +R+ V+W +++  Y  +G+    +  F +
Sbjct: 475 MSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQ 534

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAG 464
           M++SG +PD + F++VL+ACSH G V+E L +F SM   Y V P +E Y  +VD+L R G
Sbjct: 535 MIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNG 594

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP-NMMGTYIILS 523
           R  EA +L+  MPF+P E +W  +L +C+ H+   L K AA R+ +++       YI +S
Sbjct: 595 RFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMS 654

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           NIYA  G+W+  AK +K MR  G +K    SW+E++ +   F ANDK     + +   + 
Sbjct: 655 NIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKIN 714

Query: 584 MLIRHMNETAYEPDIDCLIHDLE 606
            L + M +  Y+PD  C +HD++
Sbjct: 715 ALSKEMEKKGYKPDTTCALHDVD 737



 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 131/453 (28%), Positives = 233/453 (51%), Gaps = 5/453 (1%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P   +I    +I  +   G + +AR LFD M ER  VSWT++I GY   N   +A+ ++
Sbjct: 69  MPAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLY 128

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVY-AT 159
            +M R  + P+  TL ++L     +++ +    +H   IK G E ++ V NSL+D Y  T
Sbjct: 129 ADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKT 188

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
            C+ +  A  +F  M  K+ V++ +L+TGY++ G     + +F E+   G++ + ++F+ 
Sbjct: 189 HCLYL--ASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAA 246

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
            + A        FG+ +H  V+K  F  N+ V N++LD Y + D + +  + F EM E D
Sbjct: 247 LLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELD 306

Query: 280 LITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
            I++N +I  Y  +G   E  ++F K++  RF    F F ++++   +   L  G+Q+H 
Sbjct: 307 GISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHC 366

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
             +  G +    + NAL+DMYAKC    ++QKIF  ++ +  V WT+M+  Y   G  +E
Sbjct: 367 QAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEE 426

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVD 458
            I +F +M ++GV  D+  F ++L AC++   +  G +    +       N      ++D
Sbjct: 427 GINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLD 486

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
              + G + +A +    MP +   S W  L+ A
Sbjct: 487 TYAKCGCMTDAIKSFGEMPERNSVS-WNALISA 518



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 130/255 (50%), Gaps = 18/255 (7%)

Query: 233 GKLIHAAVIKHGFGSNLPVMNSI-LDM----YCRFDCLSDANQYFDEMTEKDLITWNTII 287
           G L+HA    H     +P  N+I L+M    + +F  LS A + FD M E+  ++W  +I
Sbjct: 57  GDLVHA----HQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILI 112

Query: 288 AGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            GY +S  S E   +++ M+     P+  T  ++++    L   +   Q+H  +++ G +
Sbjct: 113 GGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYE 172

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            NL + N+L+D Y K   +  + ++F  M ++D VT+ S+M GY   G  +EAIELF E+
Sbjct: 173 YNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLEL 232

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDY----NVNPNKEIYGCVVDLLGR 462
             SG++P    F A+L+A    GL D   K+ + ++ +    N   N  +   ++D   +
Sbjct: 233 HNSGIKPSDFTFAALLSAA--VGLDDT--KFGQQVHGFVLKTNFVWNVFVGNALLDYYSK 288

Query: 463 AGRVKEAYELIKSMP 477
             +V E  +L   MP
Sbjct: 289 HDQVDEVGKLFYEMP 303


>gi|449442767|ref|XP_004139152.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Cucumis sativus]
          Length = 743

 Score =  338 bits (867), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 184/523 (35%), Positives = 294/523 (56%), Gaps = 3/523 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L+ +++  Y   G I +AR LF  +  RD+VSW  +++ Y+      +   +   M   +
Sbjct: 184 LSNSMVNMYGKCGRIADARRLFQSIDCRDIVSWNSLLSAYSKIGATEEILQLLQAMKIED 243

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + P+  T  S L A      L    LVHG+ +K+GL    +VE++L+ +Y  C   +D A
Sbjct: 244 IKPDKQTFCSALSASAIKGDLRLGKLVHGLMLKDGLNIDQHVESALVVLYLRC-RCLDPA 302

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             VF     K+ V WT +I+G   +      LGVF +M+   V+ +  + +  + ACA  
Sbjct: 303 YKVFKSTTEKDVVMWTAMISGLVQNDCADKALGVFYQMIESNVKPSTATLASGLAACAQL 362

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
           G    G  IH  V++ G   ++P  NS++ MY + + L  +   F++M EKDL++WN I+
Sbjct: 363 GCCDIGASIHGYVLRQGIMLDIPAQNSLVTMYAKCNKLQQSCSIFNKMVEKDLVSWNAIV 422

Query: 288 AGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           AG+ K+G  S+ +  F++M+     P+  T TS++ AC +  AL  G+ +H  ++R  L 
Sbjct: 423 AGHAKNGYLSKGIFFFNEMRKSFLRPDSITVTSLLQACGSAGALCQGKWIHNFVLRSSLI 482

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
             +    AL+DMY KCGN+ ++QK F  M  RDLV W+++++GYG +G G+ A+  + E 
Sbjct: 483 PCIMTETALVDMYFKCGNLENAQKCFDCMLQRDLVAWSTLIVGYGFNGKGEIALRKYSEF 542

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGR 465
           + +G+ P+ ++F++VL+ACSH GL+ +GL  ++SM  D+ ++PN E   CVVDLL RAG+
Sbjct: 543 LGTGMEPNHVIFISVLSACSHGGLISKGLSIYESMTKDFRMSPNLEHRACVVDLLSRAGK 602

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           V EAY   K M  +P   V G LL AC+ +    LGK+ A  + +LKP   G ++ L+N 
Sbjct: 603 VDEAYSFYKMMFKEPSIVVLGMLLDACRVNGRVELGKVIARDMFELKPVDPGNFVQLANS 662

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIAN 568
           YA+  +W+   K    MR +G KK  G S IEV      F A+
Sbjct: 663 YASMSRWDGVEKAWTQMRSLGLKKYPGWSSIEVHGTTFTFFAS 705



 Score =  214 bits (546), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 129/445 (28%), Positives = 234/445 (52%), Gaps = 6/445 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S + ++LI  Y   G I   R +FD M +R+VV WT +I  Y+     + A+++F +M  
Sbjct: 84  SYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGDIDIAFSMFKQMRE 143

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           + + P + TL S+L    G+  L     +H + I  G E  + + NS++++Y  C   + 
Sbjct: 144 SGIQPTSVTLLSLL---PGISKLPLLLCLHCLIILHGFESDLALSNSMVNMYGKCG-RIA 199

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +AR +F  +  ++ VSW +L++ Y+  G     L + + M +E ++ +  +F  A+ A A
Sbjct: 200 DARRLFQSIDCRDIVSWNSLLSAYSKIGATEEILQLLQAMKIEDIKPDKQTFCSALSASA 259

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
             G +  GKL+H  ++K G   +  V ++++ +Y R  CL  A + F   TEKD++ W  
Sbjct: 260 IKGDLRLGKLVHGLMLKDGLNIDQHVESALVVLYLRCRCLDPAYKVFKSTTEKDVVMWTA 319

Query: 286 IIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           +I+G  +   + + L +F +M      P+  T  S +AACA L     G  +H  ++R+G
Sbjct: 320 MISGLVQNDCADKALGVFYQMIESNVKPSTATLASGLAACAQLGCCDIGASIHGYVLRQG 379

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           +  ++   N+L+ MYAKC  +  S  IF++M ++DLV+W +++ G+  +G+  + I  F+
Sbjct: 380 IMLDIPAQNSLVTMYAKCNKLQQSCSIFNKMVEKDLVSWNAIVAGHAKNGYLSKGIFFFN 439

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
           EM KS +RPD I   ++L AC  AG + +G      +   ++ P       +VD+  + G
Sbjct: 440 EMRKSFLRPDSITVTSLLQACGSAGALCQGKWIHNFVLRSSLIPCIMTETALVDMYFKCG 499

Query: 465 RVKEAYELIKSMPFKPDESVWGPLL 489
            ++ A +    M  + D   W  L+
Sbjct: 500 NLENAQKCFDCM-LQRDLVAWSTLI 523



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 189/358 (52%), Gaps = 7/358 (1%)

Query: 79  SWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMA 138
           S+  +++  +    H+Q    ++ M +     +A+T  S+ KAC  +   S+   +H   
Sbjct: 16  SFNSLVSRLSYQGAHHQVLQTYISMQKTHTQLDAYTFPSLFKACTNLNLFSHGLSLHQSV 75

Query: 139 IKEGLEGSIYVENSLMDVYATC-CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYG 197
           +  GL    Y+ +SL+  YA   CI +   R VF+ M  +N V WTT+I  Y+  G+   
Sbjct: 76  VVNGLSHDSYIGSSLISFYAKFGCIHL--GRKVFDTMLKRNVVPWTTIIGSYSREGDIDI 133

Query: 198 GLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILD 257
              +FK+M   G++  P S ++ +        +     +H  +I HGF S+L + NS+++
Sbjct: 134 AFSMFKQMRESGIQ--PTSVTL-LSLLPGISKLPLLLCLHCLIILHGFESDLALSNSMVN 190

Query: 258 MYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFT 316
           MY +   ++DA + F  +  +D+++WN++++ Y K G++ E L +   MK E   P+  T
Sbjct: 191 MYGKCGRIADARRLFQSIDCRDIVSWNSLLSAYSKIGATEEILQLLQAMKIEDIKPDKQT 250

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           F S ++A A    L  G+ VH  +++ GL+ +  + +AL+ +Y +C  +  + K+F   +
Sbjct: 251 FCSALSASAIKGDLRLGKLVHGLMLKDGLNIDQHVESALVVLYLRCRCLDPAYKVFKSTT 310

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434
           ++D+V WT+M+ G   +    +A+ +F +M++S V+P      + L AC+  G  D G
Sbjct: 311 EKDVVMWTAMISGLVQNDCADKALGVFYQMIESNVKPSTATLASGLAACAQLGCCDIG 368



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 158/310 (50%), Gaps = 5/310 (1%)

Query: 181 SWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAV 240
           S+ +L++  ++ G  +  L  +  M     +++ Y+F    +AC +    S G  +H +V
Sbjct: 16  SFNSLVSRLSYQGAHHQVLQTYISMQKTHTQLDAYTFPSLFKACTNLNLFSHGLSLHQSV 75

Query: 241 IKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CL 299
           + +G   +  + +S++  Y +F C+    + FD M +++++ W TII  Y + G  +   
Sbjct: 76  VVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGDIDIAF 135

Query: 300 NMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMY 359
           +MF +M+     P   T  S++     ++ L     +H  I+  G + +LAL+N++++MY
Sbjct: 136 SMFKQMRESGIQPTSVTLLSLLPG---ISKLPLLLCLHCLIILHGFESDLALSNSMVNMY 192

Query: 360 AKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFM 419
            KCG I+D++++F  +  RD+V+W S++  Y   G  +E ++L   M    ++PD+  F 
Sbjct: 193 GKCGRIADARRLFQSIDCRDIVSWNSLLSAYSKIGATEEILQLLQAMKIEDIKPDKQTFC 252

Query: 420 AVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
           + L+A +  G +  G      M    +N ++ +   +V L  R   +  AY++ KS   K
Sbjct: 253 SALSASAIKGDLRLGKLVHGLMLKDGLNIDQHVESALVVLYLRCRCLDPAYKVFKSTTEK 312

Query: 480 PDESVWGPLL 489
            D  +W  ++
Sbjct: 313 -DVVMWTAMI 321


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 183/529 (34%), Positives = 308/529 (58%), Gaps = 4/529 (0%)

Query: 83  MIAGYTSFNCHNQAWTVFVEMVR-NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKE 141
           MI+G+   +C   +  VF +MV  N    +  T+ +VL A   ++ L     +  +AIK 
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60

Query: 142 GLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGV 201
           G    + +   L+ +++ C   ++ ARL+F +++ K+ +S   +I+G+  +G     + +
Sbjct: 61  GFYSHVSLLTGLISLFSKCG-EVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRL 119

Query: 202 FKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR 261
           FKE+L  G  ++  +    +   +  G       IH   +K G  S+  V  ++  +YCR
Sbjct: 120 FKELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCR 179

Query: 262 FDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSEC-LNMFSKMKSERFSPNCFTFTSI 320
            + +  A Q FDE  EK L +WN +I+G  ++G ++  +++F  M+    +PN  T TSI
Sbjct: 180 LNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSI 239

Query: 321 IAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDL 380
           ++ACA + ALS G+ VH+ I     + N+ ++ ALIDMYAKCG+I+ ++++F  M +++ 
Sbjct: 240 LSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEKNE 299

Query: 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS 440
           VTW +M+ GYG HGHG+EA++LF +M+ S V+P  + F++VL ACSHAGLV EG   F +
Sbjct: 300 VTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHT 359

Query: 441 M-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN 499
           M +D+   P  E Y C+VD+LGRAG++K+A E IK+MP +P   VWG LLGAC  H+  N
Sbjct: 360 MVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGACMIHKDTN 419

Query: 500 LGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVR 559
           L  +A+ ++ +L P  +G Y+++SNIY+ E K+ + A  R++ +     K  G + IE+ 
Sbjct: 420 LAHVASEKLFELDPENIGYYVLMSNIYSVERKYPQAASVRQVAKKKRLAKTPGCTLIEIG 479

Query: 560 DKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
                F + D+    ++ +Y  L+ L   M E  ++ +   ++HDLE E
Sbjct: 480 QVPHVFTSGDQSHPQSKAIYAELDKLTGKMTEAGFQTETTTVLHDLEEE 528



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/212 (33%), Positives = 110/212 (51%), Gaps = 2/212 (0%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           AR LFDE  E+ + SW  MI+G T     + A ++F  M +N VNPN  T++S+L AC  
Sbjct: 186 ARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQ 245

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTT 184
           + +LS    VH +      E ++YV  +L+D+YA C  S+  AR +F+ M  KN+V+W  
Sbjct: 246 IGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCG-SITVARELFDLMPEKNEVTWNA 304

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGK-LIHAAVIKH 243
           +I+GY   G+G   L +F +ML   V+    +F   + AC+  G V  G  + H  V   
Sbjct: 305 MISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDF 364

Query: 244 GFGSNLPVMNSILDMYCRFDCLSDANQYFDEM 275
           GF         ++D+  R   L  A ++   M
Sbjct: 365 GFEPLAEHYACMVDILGRAGQLKKALEFIKAM 396



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 47/87 (54%), Gaps = 6/87 (6%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           ++T LI  Y   G I  AR LFD MPE++ V+W  MI+GY       +A  +F +M+ + 
Sbjct: 270 VSTALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSS 329

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALV 134
           V P   T  SVL AC      S+A LV
Sbjct: 330 VKPTGLTFLSVLYAC------SHAGLV 350


>gi|255551609|ref|XP_002516850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543938|gb|EEF45464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 623

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 196/611 (32%), Positives = 306/611 (50%), Gaps = 67/611 (10%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T+ I +    G I  AR LFDEMP RD V+W  MI  Y+    H +A ++F +M      
Sbjct: 9   TSKISALGSSGYIVHARKLFDEMPNRDTVAWNSMITSYSQLGFHQEALSIFYQMRNTNTK 68

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P+ FT ++ L AC G  S      +H + I  G   S+ V NSL+D+Y  C     +A  
Sbjct: 69  PDHFTFTATLSACAGAGSFPFGTKIHALVIILGYHSSLPVNNSLIDMYGKC-FDAFSAGQ 127

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGN------------------------GYGGLG----- 200
           VF +M   N+VSW +L+  Y +SG                         G G  G     
Sbjct: 128 VFKEMGDINEVSWCSLLFAYTNSGRFSEASEIFNLMPRKFEIAWNTMIAGLGRYGEIELC 187

Query: 201 --VFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDM 258
             +F+EM    +E + +++S  + AC  +     G ++H  VI+ G+ S +   NSIL +
Sbjct: 188 LDMFREMRESLLEPDQWTYSALISACTESLEFLSGCMLHGLVIRSGWSSAMEAKNSILSL 247

Query: 259 YCRFDCLSDANQY-------------------------------FDEMTEKDLITWNTII 287
           Y +F  L+DA +                                F  + EK++++W ++I
Sbjct: 248 YAKFGSLNDALKVVESTGRLTQVSWNAIIDAYMKVGYVNEAYLMFQSLPEKNIVSWTSMI 307

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
            GY ++G   E L  F  M S  F P+ FTF +++ AC++LA L  G+ VH   +R G  
Sbjct: 308 TGYARNGYGEEALRFFVAMASNCFLPDDFTFGAVLHACSSLAVLGHGRMVHGCAIRNGFS 367

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
             L + N L++MYAKCG++  S   F ++  +DLV++ +++  +G HG   EA++L+++M
Sbjct: 368 TYLYVGNGLVNMYAKCGDLDGSILAFHDICAKDLVSFNALLFAFGLHGKASEALQLYEDM 427

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGR 465
           +  G +PD++ F+ +L  CSH+GL++EG  +F SM   + ++   +   C+VD+LGR G 
Sbjct: 428 MTCGTKPDKMTFIGLLMTCSHSGLIEEGRLFFNSMKSVHGLSYEADHVACMVDMLGRGGY 487

Query: 466 VKEAYELIKSMPFKPD--ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           + EA EL+K      D   S    LLGAC  H    +G      +  L+PN   +Y++ S
Sbjct: 488 LAEAKELVKKYSKTSDVEASSCEALLGACSAHGEVEMGTYLGKTLKTLEPNKEISYVLQS 547

Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
           N+Y   G+W+E    RK M   G KK  G SWIEVR+KV  F+A + +  +T  +Y  L 
Sbjct: 548 NLYCVRGQWKEAEMVRKAMVDEGLKKMPGCSWIEVRNKVTAFVAGNHLYPYTDELYKTLY 607

Query: 584 MLIRHMNETAY 594
            L   M    +
Sbjct: 608 FLEFEMRSPCF 618



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 7/170 (4%)

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           +  NL    + I      G I  ++K+F EM +RD V W SM+  Y   G  +EA+ +F 
Sbjct: 1   MRSNLFRITSKISALGSSGYIVHARKLFDEMPNRDTVAWNSMITSYSQLGFHQEALSIFY 60

Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
           +M  +  +PD   F A L+AC+ AG    G K    +     + +  +   ++D+ G+  
Sbjct: 61  QMRNTNTKPDHFTFTATLSACAGAGSFPFGTKIHALVIILGYHSSLPVNNSLIDMYGKCF 120

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLA-ALRVLDLKP 513
               A ++ K M    +E  W  LL A       N G+ + A  + +L P
Sbjct: 121 DAFSAGQVFKEMG-DINEVSWCSLLFA-----YTNSGRFSEASEIFNLMP 164


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 182/530 (34%), Positives = 293/530 (55%), Gaps = 11/530 (2%)

Query: 84  IAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKS--LSNAALVHGMAIKE 141
           +A ++   CH++A   F  M ++   P+  T S +L A   M +  +     +H  A   
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARIS 60

Query: 142 GLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGV 201
           GL  ++ V  +++ +Y  C   +D+AR  F +++WKN V+W  ++T Y   G     L +
Sbjct: 61  GLLPNVVVGTAVISMYGKCG-RLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALEL 119

Query: 202 FKEMLLEGVEMNP--YSFSIAVRACASTGWVSFGKLIHAAVIKHG--FGSNLPVMNSILD 257
           F+EM        P  +SFSIA+ AC++   +  G+ IH  + + G     ++ V  ++L+
Sbjct: 120 FREMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLN 179

Query: 258 MYCRFDCLSDANQYFDEMT-EKDLITWNTIIAGYEKSG-SSECLNMFSKMK-SERFSPNC 314
           MY +   L +A + FD +  + D + WN +IA Y + G   + L+++  M  +   +P  
Sbjct: 180 MYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQ 239

Query: 315 FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSE 374
            TF ++I  CA L+AL  G+ +HA +     D NL ++NAL+ MY KCG + ++  +F  
Sbjct: 240 GTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHS 299

Query: 375 MSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434
           M  +D ++W +++  Y  HGH  +A+ L+ EM   GV+P  + F+ +L+ACSH GLV +G
Sbjct: 300 MKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADG 359

Query: 435 LKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACK 493
           L YF  M +D+ + P+   +GC++DLLGR GR+ EA  ++KSMP + +   W  LLGACK
Sbjct: 360 LDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACK 419

Query: 494 EHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGM 553
            H     G  AA +V+D  P   G Y++LSNIYAA G+W++  K RKIM   G KK  G 
Sbjct: 420 THGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGK 479

Query: 554 SWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIH 603
           SWIE+ D V  F++ D+     + +Y  L  ++  M    Y PD   + H
Sbjct: 480 SWIEIGDVVHEFVSGDRSHPQGEEIYVELGKMVEEMKGLGYVPDTSSVFH 529



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 181/382 (47%), Gaps = 34/382 (8%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR- 105
           ++ T +I  Y   G +++AR  F+E+  ++ V+W  M+  Y       +A  +F EM   
Sbjct: 67  VVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMCER 126

Query: 106 -NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG--LEGSIYVENSLMDVYATCCI 162
                P+ F+ S  ++AC  ++ L     +H M  +EG  L   + V  +L+++Y+ C  
Sbjct: 127 SRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMYSKCG- 185

Query: 163 SMDNARLVFNDMKWKND-VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPY--SFSI 219
            ++ AR VF+ ++   D V W  +I  YA  G G   L +++ M  +  ++ P   +F  
Sbjct: 186 DLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSM-HDTTDLAPKQGTFVT 244

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
            +  CA    +  G+ IHA V    F +NL V N+++ MY +  CL +A   F  M  KD
Sbjct: 245 VIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKD 304

Query: 280 LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
            I+WNTII+ Y   G S + L ++ +M  +   P   TF  +++AC+           H 
Sbjct: 305 EISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACS-----------HG 353

Query: 339 GIVRRGLDGNLALAN------------ALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTS 385
           G+V  GLD    + +             +ID+  + G +++++ +   M    + V W S
Sbjct: 354 GLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMS 413

Query: 386 MMIGYGAHGHGKEAIELFDEMV 407
           ++     HG  K  +   D++V
Sbjct: 414 LLGACKTHGDLKRGVRAADQVV 435


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  338 bits (867), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 186/500 (37%), Positives = 293/500 (58%), Gaps = 8/500 (1%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM 174
           + S++ A     S+S  + +H   IK       ++ + L+ +Y       D  RL F++M
Sbjct: 122 VQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRL-FDEM 180

Query: 175 KWKNDVSWTTLITGYAHSGNGYGG--LGVFKEMLLE-GVEMNPYSFSIAVRACASTGWVS 231
             K+ VSW +L++G   SG GY G  L  F  M  E G + N  +    V ACA  G + 
Sbjct: 181 PNKDLVSWNSLMSGL--SGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALD 238

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            GK +H  V+K G      V+NS+++MY +   L  A+Q F+EM  + L++WN+++  + 
Sbjct: 239 EGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHN 298

Query: 292 KSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
            +G +E  +++F+ MK    +P+  T  +++ AC         + +HA I R G + ++ 
Sbjct: 299 HNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADII 358

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           +A AL+++YAK G ++ S+ IF E+ DRD + WT+M+ GY  H  G+EAI+LFD MVK G
Sbjct: 359 IATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEG 418

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEA 469
           V  D + F  +L+ACSH+GLV+EG KYF+ M++ Y V P  + Y C+VDLLGR+GR+++A
Sbjct: 419 VEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDA 478

Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529
           YELIKSMP +P   VWG LLGAC+ +    LGK  A ++L L P+    YI+LSNIY+A 
Sbjct: 479 YELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAA 538

Query: 530 GKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHM 589
           G W + +K R +M+     +  G S+IE  +K+  F+  D++   +  ++  LE LIR +
Sbjct: 539 GLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKI 598

Query: 590 NETAYEPDIDCLIHDLEGET 609
            E    P  + ++HD++ E 
Sbjct: 599 REAGCAPKTEFVLHDIDEEV 618



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 169/344 (49%), Gaps = 28/344 (8%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            +   L+  YF  G  E+A+ LFDEMP +D+VSW  +++G +           F  M R 
Sbjct: 155 FIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRM-RT 213

Query: 107 EV--NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
           E    PN  TL SV+ AC  M +L     +HG+ +K G+ G   V NSL+++Y      +
Sbjct: 214 ESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGF-L 272

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           D A  +F +M  ++ VSW +++  + H+G    G+ +F  M   G+  +  +    +RAC
Sbjct: 273 DAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRAC 332

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
             TG     + IHA + + GF +++ +  ++L++Y +   L+ +   F+E+ ++D I W 
Sbjct: 333 TDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWT 392

Query: 285 TIIAGYE-KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            ++AGY   +   E + +F  M  E    +  TFT +++AC+           H+G+V  
Sbjct: 393 AMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACS-----------HSGLVEE 441

Query: 344 G------------LDGNLALANALIDMYAKCGNISDSQKIFSEM 375
           G            ++  L   + ++D+  + G + D+ ++   M
Sbjct: 442 GKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSM 485



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 153/339 (45%), Gaps = 36/339 (10%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G + +  +LI  Y   G ++ A  LF+EMP R +VSW  M+  +       +   +F  M
Sbjct: 254 GKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLM 313

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
            R  +NP+  T+ ++L+AC        A  +H    + G    I +  +L+++YA     
Sbjct: 314 KRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLG-R 372

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           ++ +  +F ++K ++ ++WT ++ GYA    G   + +F  M+ EGVE++  +F+  + A
Sbjct: 373 LNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSA 432

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C+ +G V  GK                +M+ +  +  R D                   +
Sbjct: 433 CSHSGLVEEGK------------KYFEIMSEVYRVEPRLD------------------HY 462

Query: 284 NTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           + ++    +SG  E  + +  +KS    P+   + +++ AC     +  G++V   ++  
Sbjct: 463 SCMVDLLGRSGRLE--DAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLL-- 518

Query: 344 GLDGNLALANALI-DMYAKCGNISDSQKIFSEMSDRDLV 381
            LD +      ++ ++Y+  G   D+ K+ + M +R L 
Sbjct: 519 SLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLT 557


>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 614

 Score =  338 bits (867), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 182/532 (34%), Positives = 302/532 (56%), Gaps = 7/532 (1%)

Query: 73  PERDVVSWTVMI-AGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNA 131
           P  +  ++ +MI A  T+++ +  A ++F  M+   + P+ FT      +C  + SLS+A
Sbjct: 82  PHPNDYAFNIMIRALTTTWHNYPLALSLFHRMMSLSLTPDNFTFPFFFLSCANLASLSHA 141

Query: 132 ALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAH 191
              H +  K  L    +  +SL+  YA C + + +AR VF+++  ++ VSW ++I GYA 
Sbjct: 142 CAAHSLLFKLALHSDPHTAHSLITAYARCGL-VASARKVFDEIPHRDSVSWNSMIAGYAK 200

Query: 192 SGNGYGGLGVFKEM-LLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLP 250
           +G     + VF+EM   +G E +  S    + AC   G +  G+ +   V++ G   N  
Sbjct: 201 AGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACGELGDLELGRWVEGFVVERGMTLNSY 260

Query: 251 VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSER 309
           + ++++ MY +   L  A + FD M  +D+ITWN +I+GY ++G + E + +F  MK + 
Sbjct: 261 IGSALISMYAKCGELESARRIFDGMAARDVITWNAVISGYAQNGMADEAILLFHGMKEDC 320

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
            + N  T T++++ACAT+ AL  G+Q+     +RG   ++ +A ALIDMYAK G++ ++Q
Sbjct: 321 VTANKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKSGSLDNAQ 380

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG--VRPDRIVFMAVLTACSH 427
           ++F +M  ++  +W +M+    AHG  KEA+ LF  M   G   RP+ I F+ +L+AC H
Sbjct: 381 RVFKDMPQKNEASWNAMISALAAHGKAKEALSLFQHMSDEGGGARPNDITFVGLLSACVH 440

Query: 428 AGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWG 486
           AGLVDEG + F  M+  + + P  E Y C+VDLL RAG + EA++LI+ MP KPD+   G
Sbjct: 441 AGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIRKMPEKPDKVTLG 500

Query: 487 PLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546
            LLGAC+  +  ++G+     +L++ P+  G YII S IYA    WE+ A+ R +MR  G
Sbjct: 501 ALLGACRSKKNVDIGERVMRMILEVDPSNSGNYIISSKIYANLNMWEDSARMRLLMRQKG 560

Query: 547 SKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDI 598
             K  G SWIEV + +  F A D +   +  +  ++++L   +    Y P +
Sbjct: 561 ITKTPGCSWIEVENHLHEFHAGDGLCLDSIDLSNIIDLLYEELKREGYVPKV 612



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 122/413 (29%), Positives = 199/413 (48%), Gaps = 46/413 (11%)

Query: 31  KSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSF 90
           K ++ SDP          A +LI +Y   GL+  AR +FDE+P RD VSW  MIAGY   
Sbjct: 150 KLALHSDPHT--------AHSLITAYARCGLVASARKVFDEIPHRDSVSWNSMIAGYAKA 201

Query: 91  NCHNQAWTVFVEMVRNE-VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYV 149
            C  +A  VF EM R +   P+  +L S+L AC  +  L     V G  ++ G+  + Y+
Sbjct: 202 GCAREAVEVFREMGRRDGFEPDEMSLVSLLGACGELGDLELGRWVEGFVVERGMTLNSYI 261

Query: 150 ENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG 209
            ++L+ +YA C   +++AR +F+ M  ++ ++W  +I+GYA +G     + +F  M  + 
Sbjct: 262 GSALISMYAKCG-ELESARRIFDGMAARDVITWNAVISGYAQNGMADEAILLFHGMKEDC 320

Query: 210 VEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDAN 269
           V  N  + +  + ACA+ G +  GK I     + GF  ++ V  +++DMY +   L +A 
Sbjct: 321 VTANKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKSGSLDNAQ 380

Query: 270 QYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSE--RFSPNCFTFTSIIAACAT 326
           + F +M +K+  +WN +I+     G + E L++F  M  E     PN  TF  +++AC  
Sbjct: 381 RVFKDMPQKNEASWNAMISALAAHGKAKEALSLFQHMSDEGGGARPNDITFVGLLSAC-- 438

Query: 327 LAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSM 386
                    VHAG+V  G          L DM +    +    + +S M D         
Sbjct: 439 ---------VHAGLVDEGYR--------LFDMMSTLFGLVPKIEHYSCMVDL-------- 473

Query: 387 MIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439
                  GH  EA +L  +M +   +PD++   A+L AC     VD G +  +
Sbjct: 474 ---LARAGHLYEAWDLIRKMPE---KPDKVTLGALLGACRSKKNVDIGERVMR 520


>gi|125532437|gb|EAY79002.1| hypothetical protein OsI_34111 [Oryza sativa Indica Group]
          Length = 847

 Score =  338 bits (867), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 207/573 (36%), Positives = 316/573 (55%), Gaps = 22/573 (3%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + LA +LI  Y     +  A  LF  MP R+ VSWT +++G +    H  A   F  M R
Sbjct: 206 TFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRR 265

Query: 106 NEVNPNAFTLSSVLKACKGM------KSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
             V P  F LSS  +A   +      +S + +A V       G +  ++V ++L D+Y+ 
Sbjct: 266 AGVAPTRFALSSAARAAAALGAPLRARSCTASASV-------GFDTELFVASNLADMYSK 318

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG-VEMNPYSFS 218
           C +  +  R VF+ M  K+ V+WT +I GYA +G+    +  F++M  EG V  + + F 
Sbjct: 319 CGLLSEACR-VFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFC 377

Query: 219 IAVRACA--STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR-FDCLSDANQYFDEM 275
             + A      GW+S  K IH  V K GF   + V N+++DMY +  D  S +     + 
Sbjct: 378 SVLSASGGLKDGWLS--KSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDP 435

Query: 276 TEKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334
              ++++  ++I GY E     E L ++ +++ +   PN FTF+S+I  CA  A L  G 
Sbjct: 436 GGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGA 495

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
           Q+HA +++  L  +  + + L+DMY KCG IS S ++F+E+  R  + W +++  +  HG
Sbjct: 496 QLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHG 555

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIY 453
           HG+EAI+ FD M+ SG+RP+ I F+++LTACSHAGLVDEGLKYF SM + + + P +E Y
Sbjct: 556 HGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHY 615

Query: 454 GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513
            C++D  GRAGR+ EAY+ I  MP KP+   W  LLGAC+      LG++AA  ++ L+P
Sbjct: 616 SCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEP 675

Query: 514 NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGS 573
              G ++ LS IYA+ G+WE+    RK+MR    KK  G SW++   K   F + D    
Sbjct: 676 GNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKKTHVFGSEDWSHP 735

Query: 574 HTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
             + +Y  LE L   + E  Y PD   L  +LE
Sbjct: 736 QQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLE 768



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 124/516 (24%), Positives = 222/516 (43%), Gaps = 83/516 (16%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + LA +LI  Y     +  A  LF  MP R+ VSWT +++G +    H  A   F  M R
Sbjct: 56  TFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRR 115

Query: 106 NEVNPNAFT------------------------------------------------LSS 117
             V P                                                    L+S
Sbjct: 116 AGVAPTRLIYETKFHNTLGPKHTLAASHCHSGPTLMVKYWGQRLWRPPAPAAATTVHLAS 175

Query: 118 VLKACKGMKSLSNAALVHGMAIKEG-LEGSIYVENSLMDVYATCCISMDNARLVFNDMKW 176
           +L++C     L    L+H   +  G    S ++ N L+ +Y+ C   + +A  +F  M  
Sbjct: 176 LLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCA-DLASALRLFAAMPR 234

Query: 177 KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSF--------------SIAVR 222
           +N VSWTTL++G + +      L  F  M   GV   P  F               +  R
Sbjct: 235 RNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVA--PTRFALSSAARAAAALGAPLRAR 292

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           +C ++  V             GF + L V +++ DMY +   LS+A + FD+M +KD + 
Sbjct: 293 SCTASASV-------------GFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVA 339

Query: 283 WNTIIAGYEKSGSSECLNM-FSKMKSERF-SPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           W  +I GY K+GS E   + F  MK E     +   F S+++A   L      + +H  +
Sbjct: 340 WTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCV 399

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFS-EMSDRDLVTWTSMMIGYGAHGHGKEA 399
            + G +  +A+ NALIDMYAK  ++  + ++   +    ++V+ TSM+ GY      +EA
Sbjct: 400 TKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEA 459

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL 459
           + ++ E+ + GV P+   F +++  C+   L+++G +    +   ++  +  +   +VD+
Sbjct: 460 LVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDM 519

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            G+ G +  + +L   + ++ D + W  ++    +H
Sbjct: 520 YGKCGLISLSMQLFNEIEYRTDIA-WNAVINVFAQH 554



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 101/421 (23%), Positives = 182/421 (43%), Gaps = 66/421 (15%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEG-SIYVENSLMDVYATCCISMDNARLVFND 173
           L+S+L++C     L    L+H   +  G    S ++ N L+ +Y+ C   + +A  +F  
Sbjct: 23  LASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCA-DLASALRLFAA 81

Query: 174 MKWKNDVSWT----------------------------------------------TLIT 187
           M  +N VSWT                                              TL  
Sbjct: 82  MPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIYETKFHNTLGPKHTLAA 141

Query: 188 GYAHSGNG----YGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH 243
            + HSG      Y G  +++              +  +++C   G +  G+L+HA ++  
Sbjct: 142 SHCHSGPTLMVKYWGQRLWRPP--APAAATTVHLASLLQSCGRAGDLRRGRLLHARLVLS 199

Query: 244 GFGSNLPVM-NSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS-GSSECLNM 301
           G  +    + N ++ MY     L+ A + F  M  ++ ++W T+++G  ++   ++ L  
Sbjct: 200 GAAAASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAA 259

Query: 302 FSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK 361
           F+ M+    +P  F  +S   A A L A    +   A     G D  L +A+ L DMY+K
Sbjct: 260 FAAMRRAGVAPTRFALSSAARAAAALGAPLRARSCTAS-ASVGFDTELFVASNLADMYSK 318

Query: 362 CGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG-VRPDRIVFMA 420
           CG +S++ ++F +M  +D V WT+M+ GY  +G  + A+  F +M + G V  D+ VF +
Sbjct: 319 CGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCS 378

Query: 421 VLTACSHAGLVDEGLKYFKSMNDYNVNPNKE----IYGCVVDLLGRAGRVKEAYELIKSM 476
           VL+A    GL D  L   KS++        E    +   ++D+  ++  V+ A  ++K  
Sbjct: 379 VLSAS--GGLKDGWLS--KSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKID 434

Query: 477 P 477
           P
Sbjct: 435 P 435


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 199/570 (34%), Positives = 309/570 (54%), Gaps = 11/570 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +   LI  Y   G I +A  +F  M  +D V+W  MI G        +A   F EM R E
Sbjct: 426 IGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTE 485

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + P+ FT+ S L +C  +  +S    +H   +K GL+  + V N+L+ +Y  C   +   
Sbjct: 486 LYPSNFTMISALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGECGY-VKEC 544

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNG-YGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           +  F+ M   + VSW +LI   A S       +  F  M+  G + N  +F   + A +S
Sbjct: 545 QKAFSLMLDYDHVSWNSLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSS 604

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLITWNT 285
                 GK IHA V+K    ++  + N++L  Y +   +      F  M+++ D ++WN+
Sbjct: 605 LSLHELGKQIHALVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNS 664

Query: 286 IIAGY-EKSGSSECLNM--FSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           +I+GY       + ++M  F   K +R   + FTF ++++ACAT+A L  G +VH   VR
Sbjct: 665 MISGYIHNELLPKAMDMVWFMMQKGQRL--DGFTFATVLSACATVATLERGMEVHGCSVR 722

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
             L+ ++ + +AL+DMYAKCG I  + + F  M  R+L +W SM+ GY  HGHG ++++L
Sbjct: 723 ACLESDIVIGSALVDMYAKCGRIDYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDL 782

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLG 461
           F +M   G  PD + F+ VL+ACSHAGLV+EG  +F SM++ Y + P  E + C+VDLLG
Sbjct: 783 FAQMKLQGPLPDHVTFVGVLSACSHAGLVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLG 842

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGAC--KEHRLPNLGKLAALRVLDLKPNMMGTY 519
           R G + +  + +  MP KP+  +W  +LGAC     R   LG+ AA  +L+++P     Y
Sbjct: 843 RVGELNKMEDFLNQMPVKPNVLIWRTVLGACCRANGRNTALGRRAAEMLLEMEPTNAVNY 902

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVY 579
           I+LSN+YA+ GKW++ AK R  MR    KKE G SW+ ++D V  F+A DK       +Y
Sbjct: 903 ILLSNMYASGGKWDDVAKTRVAMRKAFVKKEAGCSWVTMKDGVHVFVAGDKSHPEKDLIY 962

Query: 580 GVLEMLIRHMNETAYEPDIDCLIHDLEGET 609
             L+ L   M    Y P+    ++DLEGE+
Sbjct: 963 EKLKELNGKMRLAGYIPETRFALYDLEGES 992



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 134/462 (29%), Positives = 234/462 (50%), Gaps = 22/462 (4%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            L   LI  Y   G +   R +FDEMP R++VSW+ +I+GYT     N+A  +F +MV +
Sbjct: 109 FLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRMPNEACELFRKMVSD 168

Query: 107 EVNPNAFTLSSVLKACK--GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
              PN +   SV++AC+  G   L     +HG+  K      +   N L+ +Y      +
Sbjct: 169 GFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTASNVLISMYGNALGMV 228

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVF----KEMLLEGVEMNPYSFSIA 220
           D AR  F+ +  +N VS  ++I+ Y   G+      +F    KE++ +G++ N Y+F   
Sbjct: 229 DYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVMGDGLKPNEYTFGSL 288

Query: 221 VRAC---ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE 277
           + A    A++G V   +L+   V K GF  +L V ++++  + +   +  A   F +M+ 
Sbjct: 289 ISATCSLANSGLVLLEQLL-TRVEKSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMSY 347

Query: 278 KDLITWNTIIAGY--EKSGSSECLNMFSKMK-SERFSPNCFTFTSIIAACATLAALSCGQ 334
           +++++ N +I G   +K G  E + +F +MK S   +PN  ++  I+ A      L  G+
Sbjct: 348 RNVVSLNGLIIGLVRQKRGE-EAVELFMEMKDSVELNPN--SYMIILTAFPEFHVLENGK 404

Query: 335 ----QVHAGIVRRGL-DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIG 389
               +VHA ++R GL +  +A+ N LI+MYAKCG I+D+  +F  M ++D VTW SM+ G
Sbjct: 405 RKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNSMITG 464

Query: 390 YGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN 449
              +    EA++ F EM ++ + P     ++ L++C+  G +  G +         ++ +
Sbjct: 465 LDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLKLGLDLD 524

Query: 450 KEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491
             +   ++ L G  G VKE  +   S+    D   W  L+GA
Sbjct: 525 VSVSNALLALYGECGYVKECQKAF-SLMLDYDHVSWNSLIGA 565



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/402 (26%), Positives = 205/402 (50%), Gaps = 20/402 (4%)

Query: 130 NAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGY 189
           +A  +H    K G    +++ N+L+++YA     + + R VF++M  +N VSW+ LI+GY
Sbjct: 91  DAEELHLQLFKNGFVNDLFLCNTLINIYARVG-DLGSGRKVFDEMPLRNLVSWSCLISGY 149

Query: 190 AHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG--WVSFGKLIHAAVIKHGFGS 247
             +        +F++M+ +G   N Y+F   +RAC   G   + FG  IH  + K  + +
Sbjct: 150 TRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVN 209

Query: 248 NLPVMNSILDMYCRFDCLSD-ANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKM 305
           ++   N ++ MY     + D A + FD +  ++L++ N++I+ Y + G +    ++FS M
Sbjct: 210 DVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTM 269

Query: 306 KSE----RFSPNCFTFTSIIAACATLA--ALSCGQQVHAGIVRRGLDGNLALANALIDMY 359
           + E       PN +TF S+I+A  +LA   L   +Q+   + + G   +L + +AL+  +
Sbjct: 270 QKEVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGF 329

Query: 360 AKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFM 419
           AK G+I  ++ IF +MS R++V+   ++IG      G+EA+ELF EM K  V  +   +M
Sbjct: 330 AKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEM-KDSVELNPNSYM 388

Query: 420 AVLTACSHAGLVDEGLKYFKSMNDYNV-----NPNKEIYGCVVDLLGRAGRVKEAYELIK 474
            +LTA     +++ G +    ++ + +     N    I   ++++  + G + +A  + +
Sbjct: 389 IILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFR 448

Query: 475 SMPFKPDESVWGPLLGACKEHR--LPNLGKLAALRVLDLKPN 514
            M  K D   W  ++    +++  L  +     +R  +L P+
Sbjct: 449 LMDNK-DSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPS 489



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 6/136 (4%)

Query: 306 KSERFSPNCFTFTSIIAACATLAALSCG----QQVHAGIVRRGLDGNLALANALIDMYAK 361
           KS +   N       I + A     SCG    +++H  + + G   +L L N LI++YA+
Sbjct: 61  KSSQLHHNPVQHDEKIESLAQRYRYSCGSKDAEELHLQLFKNGFVNDLFLCNTLINIYAR 120

Query: 362 CGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAV 421
            G++   +K+F EM  R+LV+W+ ++ GY  +    EA ELF +MV  G  P+   F +V
Sbjct: 121 VGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRMPNEACELFRKMVSDGFMPNHYAFGSV 180

Query: 422 LTACSHAGLVDEGLKY 437
           + AC   G  + GLK+
Sbjct: 181 IRACQECG--EYGLKF 194



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 6/186 (3%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++ + L+  Y   G I+ A   F+ MP R++ SW  MI+GY       ++  +F +M   
Sbjct: 730 VIGSALVDMYAKCGRIDYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQ 789

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKE--GLEGSIYVENSLMDVYATCCISM 164
              P+  T   VL AC     L N    H  ++ E  GL   +   + ++D+       +
Sbjct: 790 GPLPDHVTFVGVLSACS-HAGLVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLGRVG-EL 847

Query: 165 DNARLVFNDMKWK-NDVSWTTLITGYAHSGNGYGGLG-VFKEMLLEGVEMNPYSFSIAVR 222
           +      N M  K N + W T++     +      LG    EMLLE    N  ++ +   
Sbjct: 848 NKMEDFLNQMPVKPNVLIWRTVLGACCRANGRNTALGRRAAEMLLEMEPTNAVNYILLSN 907

Query: 223 ACASTG 228
             AS G
Sbjct: 908 MYASGG 913


>gi|302823459|ref|XP_002993382.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
 gi|300138813|gb|EFJ05567.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
          Length = 655

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 186/578 (32%), Positives = 319/578 (55%), Gaps = 11/578 (1%)

Query: 37  DPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQA 96
           D  L  +  + L   L+++Y     I++A   F E+ E++  S+ +M+  Y   + H +A
Sbjct: 8   DANLEQEKETFLGNCLVRAYGRCKSIDDAVAAFSEIAEKNEYSYAIMMGAYQENDLHKKA 67

Query: 97  WTVFVEMVRNEVNPNAFTLSSVLKACK--GMKSLSNAALVHGMAIKEGLEGSIYVENSLM 154
             +F + +  E+  N  T  +VLK+C   G   L +   +H  AI +G    + V+NSL+
Sbjct: 68  LQLFKKSINEELQQNQATYVTVLKSCAHLGEDYLEDGKEIHRHAIAQGFGTDLVVQNSLI 127

Query: 155 DVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP 214
            +YA C  S   A  VF  M+ KN +S+T++I  Y H+        ++K+ML EG+  + 
Sbjct: 128 HMYAKCG-SFKFAAGVFEKMEPKNLISYTSMIQAYTHTAKHVEAYELYKKMLSEGIMPDI 186

Query: 215 YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV-MNSILDMYCRFDCLSDANQYFD 273
           Y+++ A+  C +   +  G+ IH  +  H      PV  N+++ MY RF  ++ A   FD
Sbjct: 187 YAYAAALAVCPT---IREGEAIHVKLGNHE--RRTPVCSNALVGMYGRFGRIASAKWVFD 241

Query: 274 EMTEKDLITWNTIIAGYEK-SGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSC 332
            +  KDL ++N +IA + K    S+ ++++ +M+     PN +TFTS++ AC+ L AL+ 
Sbjct: 242 GIRYKDLASYNNMIAVFAKYDDGSKAISLYIEMEGRNLEPNLWTFTSVLDACSKLGALTE 301

Query: 333 GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA 392
           G+++H  +       ++A   AL++MYAKCG+  +++ +F++   +++ TWTS+M  Y  
Sbjct: 302 GKEIHKKVKGGDQPTDVAYNTALVNMYAKCGSTHEARAVFNDCGLKNVFTWTSLMSAYSQ 361

Query: 393 HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKE 451
            G  +  +E +  M   GV PD + F A+  ACSH+GL DEGL YF++M  D+ + P + 
Sbjct: 362 PGQSQYRLEAYQRMNCEGVIPDDVTFTAIFNACSHSGLPDEGLLYFRAMREDHWIVPLQP 421

Query: 452 IYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDL 511
            Y C++DLLGR GR++EA EL+++MP+ PD   W  LL ACK +    +G  A  R+ +L
Sbjct: 422 HYTCMIDLLGRVGRLREAEELVRTMPYSPDVVTWTILLSACKVYGDLKIGARAYKRITEL 481

Query: 512 KPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKM 571
            P   G Y+++ N+YA  GKW + A+ +K+++  G  K  G S IE + ++  F+  D  
Sbjct: 482 NPPDSGPYLLMGNMYAKAGKWADVAEVKKMIKQRGLAKPPGKSMIEAQRRIHEFVCGDTA 541

Query: 572 GSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGET 609
               Q +   L+ +   ++   YEPD   ++ D+  E 
Sbjct: 542 HPLNQEIRARLQEVHEQLSHAGYEPDTKEVLVDVNEEV 579


>gi|297602077|ref|NP_001052059.2| Os04g0118700 [Oryza sativa Japonica Group]
 gi|222628272|gb|EEE60404.1| hypothetical protein OsJ_13579 [Oryza sativa Japonica Group]
 gi|255675134|dbj|BAF13973.2| Os04g0118700 [Oryza sativa Japonica Group]
          Length = 856

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 201/568 (35%), Positives = 310/568 (54%), Gaps = 14/568 (2%)

Query: 52  LIKSYFDEGLIEEARTLF-DEMPER-DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           L+  Y   GL+ +A+ LF    P R DVV+W  M++        ++A     +MV   V 
Sbjct: 211 LLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVR 270

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG-LEGSIYVENSLMDVYATCCISMDNAR 168
           P+  T +S L AC  ++ L     +H   IK+  L  + +V ++L+D+YAT    +  AR
Sbjct: 271 PDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATH-EQVGKAR 329

Query: 169 LVFNDM--KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAVRACA 225
            VF+ +    K    W  +I GYA +G     L +F  M  E G      + +  + ACA
Sbjct: 330 QVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACA 389

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
            +   +  + +H  V+K G   N  V N+++DMY R      A + F  +   D+++WNT
Sbjct: 390 RSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNT 449

Query: 286 IIAGYEKSGS-SECLNMFSKMKSER---FSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           +I G    G  ++   +  +M+        PN  T  +++  CA LAA + G+++H   V
Sbjct: 450 LITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAV 509

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           R  LD ++A+ +AL+DMYAKCG ++ S+ +F  +  R+ +TW  +++ YG HG G EA  
Sbjct: 510 RHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATV 569

Query: 402 LFDEMVKSG-VRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDL 459
           LFD M  SG  RP+ + FMA L ACSH+G+VD GL+ F +M  D+ V P  +I  CVVD+
Sbjct: 570 LFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDI 629

Query: 460 LGRAGRVKEAYELIKSMPFKPDE-SVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518
           LGRAGR+ EAY ++ SM     + S W  +LGAC+ HR  +LG++A  R+L+L+P     
Sbjct: 630 LGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASH 689

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
           Y++L NIY+A G+W   A+ R  MR  G  KE G SWIEV   +  F+A +     ++ V
Sbjct: 690 YVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEV 749

Query: 579 YGVLEMLIRHMNETAYEPDIDCLIHDLE 606
           +  +E L   M    Y PD  C++HD++
Sbjct: 750 HAHMEALWGEMVARGYTPDTSCVLHDMD 777



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 132/505 (26%), Positives = 242/505 (47%), Gaps = 28/505 (5%)

Query: 18  IPPIIK--------QSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLF 69
           +PP IK        +S +++  ++++    L+ +    +A  L+ +Y   G +  A  +F
Sbjct: 62  LPPAIKSAAALRDARSARAIHAAALRRG--LLHRPSPAVANALLTAYARCGRLAAALEVF 119

Query: 70  DEMPE--RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKS 127
             + +   D VS+  +I+    F   + A      M+       +FTL SVL+A   + +
Sbjct: 120 GSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPA 179

Query: 128 LSNAALV----HGMAIKEGL--EGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND-V 180
            + A  +    H  A+K GL      +  N+L+ +YA   +  D  RL       + D V
Sbjct: 180 AAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVV 239

Query: 181 SWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAV 240
           +W T+++    SG     +    +M+  GV  +  +F+ A+ AC+    +  G+ +HA V
Sbjct: 240 TWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYV 299

Query: 241 IKHG-FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE--KDLITWNTIIAGYEKSG-SS 296
           IK     +N  V ++++DMY   + +  A Q FD + +  K L  WN +I GY ++G   
Sbjct: 300 IKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDE 359

Query: 297 ECLNMFSKMKSER-FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
           E L +F++M++E  F P   T  S++ ACA   A +  + VH  +V+RG+ GN  + NAL
Sbjct: 360 EALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNAL 419

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK---SGVR 412
           +DMYA+ G    +++IF+ +   D+V+W +++ G    GH  +A +L  EM +    GV 
Sbjct: 420 MDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVV 479

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
           P+ I  M +L  C+       G +       + ++ +  +   +VD+  + G +  +  +
Sbjct: 480 PNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAV 539

Query: 473 IKSMPFKPDESVWGPLLGACKEHRL 497
              +P + +   W  L+ A   H L
Sbjct: 540 FDRLP-RRNTITWNVLIMAYGMHGL 563



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 120/252 (47%), Gaps = 10/252 (3%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   +   L+  Y   G  + AR +F  +   DVVSW  +I G         A+ +  EM
Sbjct: 411 GNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREM 470

Query: 104 VRNE---VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
            + E   V PNA TL ++L  C  + + +    +HG A++  L+  + V ++L+D+YA C
Sbjct: 471 QQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKC 530

Query: 161 -CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG-VEMNPYSFS 218
            C+++  +R VF+ +  +N ++W  LI  Y   G G     +F  M   G    N  +F 
Sbjct: 531 GCLAL--SRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFM 588

Query: 219 IAVRACASTGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT- 276
            A+ AC+ +G V  G +L HA    HG      ++  ++D+  R   L +A      M  
Sbjct: 589 AALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMET 648

Query: 277 -EKDLITWNTII 287
            E+ +  W+T++
Sbjct: 649 GEQQVSAWSTML 660


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 175/495 (35%), Positives = 291/495 (58%), Gaps = 4/495 (0%)

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMK 175
           +S+L++C   K++     +H    + G+  +  +   L+++Y  C  S+ NA L+F+ + 
Sbjct: 5   ASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICN-SLTNAHLLFDRIS 63

Query: 176 WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKL 235
            +N   W  +I GYA +G     + ++ +M   G+  + ++F   ++AC++   +  GK 
Sbjct: 64  KRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKK 123

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS 295
           IH  VI+ G  S++ V  +++DMY +  C+  A Q FD++ E+D++ WN+++A Y ++G 
Sbjct: 124 IHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQ 183

Query: 296 -SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
             E L +   M      P   TF   IAA A    L  G+++H    R G + N  +  A
Sbjct: 184 PDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTA 243

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
           L+DMYAK G+++ ++ +F  + ++ +V+W +M+ GY  HGH  EA++LF EM K  V PD
Sbjct: 244 LMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEM-KGKVLPD 302

Query: 415 RIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELI 473
            I F+ VL ACSH GL++EG  +F+SM +D+N+ P  + Y C++DLLG  GR++EAY+LI
Sbjct: 303 HITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLI 362

Query: 474 KSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWE 533
             M  +PD  VWG LL +CK H    +G+LA  ++++L+P+  G Y+ILSN+YA  GKW+
Sbjct: 363 MEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQAGKWD 422

Query: 534 EFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETA 593
             A+ R +M   G KK +  SWIEV +KV  F++ D     ++ +Y  L+   + M E  
Sbjct: 423 GVARLRDLMMNKGLKKSIACSWIEVGNKVHAFLSEDTSHPKSEAIYAELKRTGKLMKEAG 482

Query: 594 YEPDIDCLIHDLEGE 608
           Y P +  + HD+E +
Sbjct: 483 YAPQVGSVFHDVEDD 497



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/367 (28%), Positives = 192/367 (52%), Gaps = 10/367 (2%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +LAT L+  Y     +  A  LFD + +R++  W VMI GY     +  A +++ +M   
Sbjct: 37  LLATKLVNLYCICNSLTNAHLLFDRISKRNLFLWNVMIRGYAWNGPYELAISLYYQMRDY 96

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMD 165
            + P+ FT   VLKAC  + ++     +H   I+ GLE  ++V  +L+D+YA C C+  +
Sbjct: 97  GLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCV--E 154

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +AR VF+ +  ++ V W +++  Y+ +G     L + + M   G++    +F I++ A A
Sbjct: 155 SARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASA 214

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
             G +  GK +H    +HGF SN  V  +++DMY +   ++ A   F+ + EK +++WN 
Sbjct: 215 DNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNA 274

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ-QVHAGIVRR 343
           +I GY   G ++E L++F +MK  +  P+  TF  ++AAC+    L+ G+    + I   
Sbjct: 275 MITGYAMHGHANEALDLFKEMKG-KVLPDHITFVGVLAACSHGGLLNEGKMHFRSMISDF 333

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGH---GKEA 399
            +   +     +ID+   CG + ++ K+  EM  + D   W +++     HG+   G+ A
Sbjct: 334 NIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHGNVEMGELA 393

Query: 400 IELFDEM 406
           +E   E+
Sbjct: 394 LEKLVEL 400



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 180/364 (49%), Gaps = 38/364 (10%)

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
           ++  +++C     +  GK +HA + + G   N  +   ++++YC  + L++A+  FD ++
Sbjct: 4   YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63

Query: 277 EKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ 335
           +++L  WN +I GY  +G  E  ++++ +M+     P+ FTF  ++ AC+ L+A+  G++
Sbjct: 64  KRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKK 123

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
           +H  ++R GL+ ++ +  ALIDMYAKCG +  ++++F ++ +RD+V W SM+  Y  +G 
Sbjct: 124 IHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQ 183

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455
             E++ L   M  +G++P    F+  + A +  GL+ +G +       +    N ++   
Sbjct: 184 PDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTA 243

Query: 456 VVDLLGRAGRV-------------------------------KEAYELIKSMPFK--PDE 482
           ++D+  ++G V                                EA +L K M  K  PD 
Sbjct: 244 LMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMKGKVLPDH 303

Query: 483 SVWGPLLGACKEHRLPNLGKL---AALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFR 539
             +  +L AC    L N GK+   + +   ++ P +   Y  + ++    G+ EE  K  
Sbjct: 304 ITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQ-HYTCMIDLLGHCGRLEEAYKLI 362

Query: 540 KIMR 543
             MR
Sbjct: 363 MEMR 366


>gi|38344863|emb|CAE01289.2| OSJNBa0020P07.6 [Oryza sativa Japonica Group]
          Length = 854

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 201/568 (35%), Positives = 310/568 (54%), Gaps = 14/568 (2%)

Query: 52  LIKSYFDEGLIEEARTLF-DEMPER-DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           L+  Y   GL+ +A+ LF    P R DVV+W  M++        ++A     +MV   V 
Sbjct: 209 LLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVR 268

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG-LEGSIYVENSLMDVYATCCISMDNAR 168
           P+  T +S L AC  ++ L     +H   IK+  L  + +V ++L+D+YAT    +  AR
Sbjct: 269 PDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATH-EQVGKAR 327

Query: 169 LVFNDM--KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAVRACA 225
            VF+ +    K    W  +I GYA +G     L +F  M  E G      + +  + ACA
Sbjct: 328 QVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACA 387

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
            +   +  + +H  V+K G   N  V N+++DMY R      A + F  +   D+++WNT
Sbjct: 388 RSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNT 447

Query: 286 IIAGYEKSGS-SECLNMFSKMKSER---FSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           +I G    G  ++   +  +M+        PN  T  +++  CA LAA + G+++H   V
Sbjct: 448 LITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAV 507

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           R  LD ++A+ +AL+DMYAKCG ++ S+ +F  +  R+ +TW  +++ YG HG G EA  
Sbjct: 508 RHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATV 567

Query: 402 LFDEMVKSG-VRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDL 459
           LFD M  SG  RP+ + FMA L ACSH+G+VD GL+ F +M  D+ V P  +I  CVVD+
Sbjct: 568 LFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDI 627

Query: 460 LGRAGRVKEAYELIKSMPFKPDE-SVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518
           LGRAGR+ EAY ++ SM     + S W  +LGAC+ HR  +LG++A  R+L+L+P     
Sbjct: 628 LGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASH 687

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
           Y++L NIY+A G+W   A+ R  MR  G  KE G SWIEV   +  F+A +     ++ V
Sbjct: 688 YVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEV 747

Query: 579 YGVLEMLIRHMNETAYEPDIDCLIHDLE 606
           +  +E L   M    Y PD  C++HD++
Sbjct: 748 HAHMEALWGEMVARGYTPDTSCVLHDMD 775



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 132/505 (26%), Positives = 242/505 (47%), Gaps = 28/505 (5%)

Query: 18  IPPIIK--------QSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLF 69
           +PP IK        +S +++  ++++    L+ +    +A  L+ +Y   G +  A  +F
Sbjct: 60  LPPAIKSAAALRDARSARAIHAAALRRG--LLHRPSPAVANALLTAYARCGRLAAALEVF 117

Query: 70  DEMPE--RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKS 127
             + +   D VS+  +I+    F   + A      M+       +FTL SVL+A   + +
Sbjct: 118 GSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPA 177

Query: 128 LSNAALV----HGMAIKEGL--EGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND-V 180
            + A  +    H  A+K GL      +  N+L+ +YA   +  D  RL       + D V
Sbjct: 178 AAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVV 237

Query: 181 SWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAV 240
           +W T+++    SG     +    +M+  GV  +  +F+ A+ AC+    +  G+ +HA V
Sbjct: 238 TWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYV 297

Query: 241 IKHG-FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE--KDLITWNTIIAGYEKSG-SS 296
           IK     +N  V ++++DMY   + +  A Q FD + +  K L  WN +I GY ++G   
Sbjct: 298 IKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDE 357

Query: 297 ECLNMFSKMKSER-FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
           E L +F++M++E  F P   T  S++ ACA   A +  + VH  +V+RG+ GN  + NAL
Sbjct: 358 EALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNAL 417

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK---SGVR 412
           +DMYA+ G    +++IF+ +   D+V+W +++ G    GH  +A +L  EM +    GV 
Sbjct: 418 MDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVV 477

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
           P+ I  M +L  C+       G +       + ++ +  +   +VD+  + G +  +  +
Sbjct: 478 PNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAV 537

Query: 473 IKSMPFKPDESVWGPLLGACKEHRL 497
              +P + +   W  L+ A   H L
Sbjct: 538 FDRLP-RRNTITWNVLIMAYGMHGL 561



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 120/252 (47%), Gaps = 10/252 (3%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   +   L+  Y   G  + AR +F  +   DVVSW  +I G         A+ +  EM
Sbjct: 409 GNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREM 468

Query: 104 VRNE---VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
            + E   V PNA TL ++L  C  + + +    +HG A++  L+  + V ++L+D+YA C
Sbjct: 469 QQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKC 528

Query: 161 -CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG-VEMNPYSFS 218
            C+++  +R VF+ +  +N ++W  LI  Y   G G     +F  M   G    N  +F 
Sbjct: 529 GCLAL--SRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFM 586

Query: 219 IAVRACASTGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT- 276
            A+ AC+ +G V  G +L HA    HG      ++  ++D+  R   L +A      M  
Sbjct: 587 AALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMET 646

Query: 277 -EKDLITWNTII 287
            E+ +  W+T++
Sbjct: 647 GEQQVSAWSTML 658


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 189/567 (33%), Positives = 305/567 (53%), Gaps = 5/567 (0%)

Query: 46  SILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
           SI+  N LI  Y     +  A  LFD MPER+VVSW+ ++ GY       +   +  +M+
Sbjct: 65  SIIEVNSLINFYAKVNQVSIAHNLFDRMPERNVVSWSALMTGYLLNGFSLKVIRLLKDMI 124

Query: 105 -RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
               V+PN + L+  + +C     +      HG+ +K G     YV N+L+ +Y+ C I 
Sbjct: 125 SEGNVSPNEYILAIAISSCCDRGRVEEGRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIV 184

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
            D A  V+N++   + V++ ++++    +G    GL V + M+ E V+ +  +F  A   
Sbjct: 185 QD-AMGVWNEVPVNDIVAYNSILSSLVENGYLREGLEVLRSMVSESVKWDKVTFVNAFSL 243

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           CAS   +  G  +H  ++      +  V ++I++MY +      A   FD +  ++++ W
Sbjct: 244 CASLKDLRLGLHVHGKMLTSDVECDAYVSSAIINMYGKCGKSLMARGVFDGLQSRNVVLW 303

Query: 284 NTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
             ++A   ++G   E LN+FSKM+ E    N FT+  ++ ACA L+A   G  +H    +
Sbjct: 304 TAVMASCFQNGCFEEALNLFSKMEQENVKSNEFTYAVLLNACAGLSARRNGSLLHGHSEK 363

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            G   ++ + NALI+MYAK G+I  ++K+FS+M  RD++TW +M+ G+  HG GK+A+ +
Sbjct: 364 SGFKHHVMVGNALINMYAKSGDIEAAKKVFSDMMHRDIITWNAMICGFSHHGLGKKALLV 423

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS-MNDYNVNPNKEIYGCVVDLLG 461
           F +M+ +   P+ + F  VL+AC H GLV EG  Y    M  + V P  E Y C+V LL 
Sbjct: 424 FQDMLAAEEHPNYVTFTGVLSACGHLGLVQEGFYYLHHLMKQFGVQPGLEHYTCIVSLLS 483

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           + G++ EA   +++ P K D   W  LL AC  H+   LG+  A  VL++ PN +GTY +
Sbjct: 484 KTGQLNEARNFMRTAPVKWDVVAWRTLLNACHVHQNYGLGRWVAEFVLEMDPNDVGTYTL 543

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGV 581
           LSNIYA E +W+   K RK+MR    KKE G+SWIE+ +    F + D         Y  
Sbjct: 544 LSNIYAKEKRWDGVVKVRKLMRDKKIKKEPGVSWIEIGNVTHIFTSEDNKHPDYGQTYQK 603

Query: 582 LEMLIRHMNETAYEPDIDCLIHDLEGE 608
           ++ L+  +    Y PDI  ++HD+E E
Sbjct: 604 VKELLAMIKPLGYTPDIGAVLHDVEDE 630



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 143/284 (50%), Gaps = 5/284 (1%)

Query: 213 NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVM--NSILDMYCRFDCLSDANQ 270
           +P      ++  A T  +  GK IH+ +I     +   ++  NS+++ Y + + +S A+ 
Sbjct: 28  SPLDLIKLLKLSADTKNLKVGKTIHSHLIVTSRATENSIIEVNSLINFYAKVNQVSIAHN 87

Query: 271 YFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSE-RFSPNCFTFTSIIAACATLA 328
            FD M E+++++W+ ++ GY  +G S + + +   M SE   SPN +     I++C    
Sbjct: 88  LFDRMPERNVVSWSALMTGYLLNGFSLKVIRLLKDMISEGNVSPNEYILAIAISSCCDRG 147

Query: 329 ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMI 388
            +  G+Q H  +++ G   +  + NAL+ MY+KC  + D+  +++E+   D+V + S++ 
Sbjct: 148 RVEEGRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILS 207

Query: 389 GYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP 448
               +G+ +E +E+   MV   V+ D++ F+   + C+    +  GL     M   +V  
Sbjct: 208 SLVENGYLREGLEVLRSMVSESVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVEC 267

Query: 449 NKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGAC 492
           +  +   ++++ G+ G+   A  +   +  + +  +W  ++ +C
Sbjct: 268 DAYVSSAIINMYGKCGKSLMARGVFDGLQSR-NVVLWTAVMASC 310


>gi|116308873|emb|CAH66009.1| H0613H07.7 [Oryza sativa Indica Group]
 gi|116317921|emb|CAH65944.1| H0716A07.2 [Oryza sativa Indica Group]
          Length = 854

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 201/568 (35%), Positives = 310/568 (54%), Gaps = 14/568 (2%)

Query: 52  LIKSYFDEGLIEEARTLF-DEMPER-DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           L+  Y   GL+ +A+ LF    P R DVV+W  M++        ++A     +MV   V 
Sbjct: 209 LLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVR 268

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG-LEGSIYVENSLMDVYATCCISMDNAR 168
           P+  T +S L AC  ++ L     +H   IK+  L  + +V ++L+D+YAT    +  AR
Sbjct: 269 PDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATH-EQVGKAR 327

Query: 169 LVFNDM--KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAVRACA 225
            VF+ +    K    W  +I GYA +G     L +F  M  E G      + +  + ACA
Sbjct: 328 QVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACA 387

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
            +   +  + +H  V+K G   N  V N+++DMY R      A + F  +   D+++WNT
Sbjct: 388 RSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNT 447

Query: 286 IIAGYEKSGS-SECLNMFSKMKSER---FSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           +I G    G  ++   +  +M+        PN  T  +++  CA LAA + G+++H   V
Sbjct: 448 LITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAV 507

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           R  LD ++A+ +AL+DMYAKCG ++ S+ +F  +  R+ +TW  +++ YG HG G EA  
Sbjct: 508 RHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATV 567

Query: 402 LFDEMVKSG-VRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDL 459
           LFD M  SG  RP+ + FMA L ACSH+G+VD GL+ F +M  D+ V P  +I  CVVD+
Sbjct: 568 LFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDI 627

Query: 460 LGRAGRVKEAYELIKSMPFKPDE-SVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518
           LGRAGR+ EAY ++ SM     + S W  +LGAC+ HR  +LG++A  R+L+L+P     
Sbjct: 628 LGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASH 687

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
           Y++L NIY+A G+W   A+ R  MR  G  KE G SWIEV   +  F+A +     ++ V
Sbjct: 688 YVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEV 747

Query: 579 YGVLEMLIRHMNETAYEPDIDCLIHDLE 606
           +  +E L   M    Y PD  C++HD++
Sbjct: 748 HAHMEALWGEMVARGYTPDTSCVLHDMD 775



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 132/505 (26%), Positives = 242/505 (47%), Gaps = 28/505 (5%)

Query: 18  IPPIIK--------QSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLF 69
           +PP IK        +S +++  ++++    L+ +    +A  L+ +Y   G +  A  +F
Sbjct: 60  LPPAIKSAAALRDARSARAIHAAALRRG--LLHRPSPAVANALLTAYARCGRLAAALEVF 117

Query: 70  DEMPE--RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKS 127
             + +   D VS+  +I+    F   + A      M+       +FTL SVL+A   + +
Sbjct: 118 GSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPA 177

Query: 128 LSNAALV----HGMAIKEGL--EGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND-V 180
            + A  +    H  A+K GL      +  N+L+ +YA   +  D  RL       + D V
Sbjct: 178 AAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVV 237

Query: 181 SWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAV 240
           +W T+++    SG     +    +M+  GV  +  +F+ A+ AC+    +  G+ +HA V
Sbjct: 238 TWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYV 297

Query: 241 IKHG-FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE--KDLITWNTIIAGYEKSG-SS 296
           IK     +N  V ++++DMY   + +  A Q FD + +  K L  WN +I GY ++G   
Sbjct: 298 IKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDE 357

Query: 297 ECLNMFSKMKSER-FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355
           E L +F++M++E  F P   T  S++ ACA   A +  + VH  +V+RG+ GN  + NAL
Sbjct: 358 EALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNAL 417

Query: 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK---SGVR 412
           +DMYA+ G    +++IF+ +   D+V+W +++ G    GH  +A +L  EM +    GV 
Sbjct: 418 MDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVV 477

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
           P+ I  M +L  C+       G +       + ++ +  +   +VD+  + G +  +  +
Sbjct: 478 PNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAV 537

Query: 473 IKSMPFKPDESVWGPLLGACKEHRL 497
              +P + +   W  L+ A   H L
Sbjct: 538 FDRLP-RRNTITWNVLIMAYGMHGL 561



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 120/252 (47%), Gaps = 10/252 (3%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   +   L+  Y   G  + AR +F  +   DVVSW  +I G         A+ +  EM
Sbjct: 409 GNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREM 468

Query: 104 VRNE---VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
            + E   V PNA TL ++L  C  + + +    +HG A++  L+  + V ++L+D+YA C
Sbjct: 469 QQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKC 528

Query: 161 -CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG-VEMNPYSFS 218
            C+++  +R VF+ +  +N ++W  LI  Y   G G     +F  M   G    N  +F 
Sbjct: 529 GCLAL--SRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFM 586

Query: 219 IAVRACASTGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT- 276
            A+ AC+ +G V  G +L HA    HG      ++  ++D+  R   L +A      M  
Sbjct: 587 AALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEA 646

Query: 277 -EKDLITWNTII 287
            E+ +  W+T++
Sbjct: 647 GEQQVSAWSTML 658


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 180/569 (31%), Positives = 307/569 (53%), Gaps = 4/569 (0%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           +G   +   L+  Y   GL  +A  +F  + + D+V W+ +I          ++  +F  
Sbjct: 346 EGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHL 405

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M   +  PN +T+ S+L A     +L     +H    K G E  + V N+L+ +Y     
Sbjct: 406 MRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGC 465

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
             D  +L +  M  ++ +SW   ++G    G     L +F  ML EG   N Y+F   + 
Sbjct: 466 VHDGTKL-YESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILG 524

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           +C+    V +G+ +HA +IK+    N  V  +++DMY +   L DA+  F+ ++ +DL T
Sbjct: 525 SCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFT 584

Query: 283 WNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           W  II  Y ++   E  LN F +M+ E   PN FT    ++ C++LA+L  GQQ+H+ + 
Sbjct: 585 WTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVF 644

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           + G   ++ + +AL+DMYAKCG + +++ +F  +  RD + W +++ GY  +G G +A+ 
Sbjct: 645 KSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALT 704

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLL 460
            F  M+  G+ PD + F  +L+ACSH GLV+EG ++F SM  D+ ++P  +   C+VD+L
Sbjct: 705 AFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDIL 764

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520
           GR G+  E  + I+ M    +  +W  +LGA K H    LG+ AA ++ +L+P    +YI
Sbjct: 765 GRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYI 824

Query: 521 ILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYG 580
           +LSNI+A EG+W++  + R +M   G KKE G SW+E   +V  F+++D      Q ++ 
Sbjct: 825 LLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHL 884

Query: 581 VLEMLIRHMNETAYEPDIDCLIHDLEGET 609
            L+ L R +    Y P  + ++H++ GET
Sbjct: 885 KLDELDRELASIQYVPKTEYVLHNV-GET 912



 Score =  248 bits (633), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 139/444 (31%), Positives = 235/444 (52%), Gaps = 3/444 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + + L+  Y   G IE A  +F  MPE++ V+W V++ GY           +F  M+  
Sbjct: 249 FVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMEL 308

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           +V  N FTL++VLK C   K+L    ++H + IK G EG+ ++   L+D+Y+ C +++D 
Sbjct: 309 DVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAID- 367

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  VF  +K  + V W+ LIT     G     + +F  M L     N Y+    + A  +
Sbjct: 368 AIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATN 427

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
           TG + +G+ IHA V K+GF +++ V N+++ MY +  C+ D  + ++ M ++DLI+WN  
Sbjct: 428 TGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAY 487

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           ++G    G     L +F  M  E F PN +TF SI+ +C+ L  +  G+QVHA I++  L
Sbjct: 488 LSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQL 547

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           D N  +  ALIDMYAKC  + D+   F+ +S RDL TWT ++  Y     G++A+  F +
Sbjct: 548 DDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQ 607

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M + GV+P+       L+ CS    ++ G +    +       +  +   +VD+  + G 
Sbjct: 608 MQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGC 667

Query: 466 VKEAYELIKSMPFKPDESVWGPLL 489
           ++EA  L +++  + D   W  ++
Sbjct: 668 MEEAEALFEAL-IRRDTIAWNTII 690



 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 121/406 (29%), Positives = 218/406 (53%), Gaps = 2/406 (0%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           AR +  +MP+RDVVSWT +I G  +    N +  +F EM    + PN FTL++ LKAC  
Sbjct: 166 ARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSL 225

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTT 184
             +L     +H  A K GL   ++V ++L+D+YA C   ++ A  +F  M  +NDV+W  
Sbjct: 226 CMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCG-EIELASKMFIGMPEQNDVTWNV 284

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG 244
           L+ GYA  G+  G L +F  M+   V+ N ++ +  ++ CA++  +  G++IH+ +IK G
Sbjct: 285 LLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCG 344

Query: 245 FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFS 303
           +  N  +   ++DMY +     DA   F  + + D++ W+ +I   ++ G S E + +F 
Sbjct: 345 YEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFH 404

Query: 304 KMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG 363
            M+     PN +T  S+++A      L  GQ +HA + + G + ++A++NAL+ MY K G
Sbjct: 405 LMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNG 464

Query: 364 NISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLT 423
            + D  K++  M DRDL++W + + G    G     + +F  M++ G  P+   F+++L 
Sbjct: 465 CVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILG 524

Query: 424 ACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
           +CS    V  G +    +    ++ N  +   ++D+  +   +++A
Sbjct: 525 SCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDA 570



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 105/362 (29%), Positives = 188/362 (51%), Gaps = 2/362 (0%)

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMK 175
           SS+L+ C   +SL  A  +HG+ +K+ +    ++  SL++VYA C  S   ARLV   M 
Sbjct: 116 SSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSA-YARLVLAKMP 174

Query: 176 WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKL 235
            ++ VSWT LI G    G     + +F+EM  EG+  N ++ +  ++AC+    +  GK 
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS 295
           +HA   K G   +L V ++++D+Y +   +  A++ F  M E++ +TWN ++ GY + G 
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGD 294

Query: 296 -SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
            +  L +F  M       N FT T+++  CA    L  GQ +H+ I++ G +GN  +   
Sbjct: 295 VTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCG 354

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
           L+DMY+KCG   D+  +F  +   D+V W++++      G  +E+I+LF  M      P+
Sbjct: 355 LVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPN 414

Query: 415 RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
           +    ++L+A ++ G +  G      +  Y    +  +   +V +  + G V +  +L +
Sbjct: 415 QYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYE 474

Query: 475 SM 476
           SM
Sbjct: 475 SM 476



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 159/314 (50%), Gaps = 5/314 (1%)

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
           +S  +R CAS   +   K IH  ++K     +  +  S++++Y +    + A     +M 
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 277 EKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ 335
           ++D+++W  +I G    G +++ + +F +M++E   PN FT  + + AC+   AL  G+Q
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
           +HA   + GL  +L + +AL+D+YAKCG I  + K+F  M +++ VTW  ++ GY   G 
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGD 294

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455
               ++LF  M++  V+ +      VL  C+++  + +G +   S+         E  GC
Sbjct: 295 VTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQG-QVIHSLIIKCGYEGNEFIGC 353

Query: 456 -VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514
            +VD+  + G   +A  + K++  KPD  VW  L+  C + +  +   +    ++ L   
Sbjct: 354 GLVDMYSKCGLAIDAIGVFKTIK-KPDIVVWSALI-TCLDQQGQSEESIKLFHLMRLGDT 411

Query: 515 MMGTYIILSNIYAA 528
           +   Y I S + AA
Sbjct: 412 LPNQYTICSLLSAA 425


>gi|357512007|ref|XP_003626292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355501307|gb|AES82510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 650

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 188/566 (33%), Positives = 315/566 (55%), Gaps = 12/566 (2%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
           +L+  Y   G    A  +FD MP RD VSW  MI+G+      + ++  F +M  +    
Sbjct: 82  SLLSMYSKCGEFRNAGNVFDYMPVRDTVSWNTMISGFLRNGDFDTSFKFFKQMTESNRVC 141

Query: 111 NAF---TLSSVLKACKGMK---SLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CIS 163
             F   TL+++L  C G++   S S   ++HG+    G E  I V N+L+  Y  C C S
Sbjct: 142 CRFDKATLTTMLSGCDGLRLGISTSVTQMIHGLVFVGGFEREITVGNALITSYFKCECFS 201

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG-VEMNPYSFSIAVR 222
               R VF++M  +N V+WT +I+G A +      L +F +M   G V  N  ++  ++ 
Sbjct: 202 --QGRKVFDEMIERNVVTWTAVISGLAQNEFYEDSLRLFAQMRCCGSVSPNVLTYLSSLM 259

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           AC+    +  G+ IH  + K G  S+L + ++++D+Y +   L  A Q F+   E D ++
Sbjct: 260 ACSGLQVLRDGQKIHGLLWKLGMQSDLCIESALMDLYSKCGSLDAAWQIFESAEELDGVS 319

Query: 283 WNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
              I+  + ++G   E + +F+KM +     +    ++++        L+ G+Q+H+ I+
Sbjct: 320 LTVILVAFAQNGFEEEAIQIFTKMVALGMEVDANMVSAVLGVFGVGTYLALGKQIHSLII 379

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           ++    N  + N L++MY+KCG++SDS  +F +M+ ++ V+W S++  +  HG G +A++
Sbjct: 380 KKNFCENPFVGNGLVNMYSKCGDLSDSLLVFYQMTQKNSVSWNSVIAAFARHGDGFKALQ 439

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLL 460
            ++EM   GV P  + F+++L ACSHAGLV++G++  +SM ND+ ++P  E Y CVVD+L
Sbjct: 440 FYEEMRVEGVAPTDVTFLSLLHACSHAGLVEKGMELLESMTNDHGISPRSEHYACVVDML 499

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520
           GRAG + EA + I+ +P      VW  LLGAC  H    +GK AA R+    P     Y+
Sbjct: 500 GRAGHLNEAKKFIEGLPEHGGVLVWQALLGACSIHGDSEMGKYAADRLFSAAPASPAPYV 559

Query: 521 ILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYG 580
           +++NIY++EG W+E A   K M+ MG  KEVG+SWIE+  KV  F+  DK+      ++ 
Sbjct: 560 LMANIYSSEGNWKERASSIKRMKEMGVAKEVGISWIEIEKKVNSFVVGDKLHPEADVIFW 619

Query: 581 VLEMLIRHMNETAYEPDIDCLIHDLE 606
           VL  L++H+ +  Y PD   ++  LE
Sbjct: 620 VLSGLLKHLKDEGYVPDKKFILFYLE 645



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 138/280 (49%), Gaps = 16/280 (5%)

Query: 212 MNPYSFSIAVRACASTGWVSFGKLIHAAVIKH-------GFGSN-LPVMNSILDMYCRFD 263
           +N    +  +  C     ++ G  IHA +IK        G   N L + NS+L MY +  
Sbjct: 32  LNHADLTSLLTLCGRDRNLTLGSSIHARIIKQPPSFDFDGSQRNALFIWNSLLSMYSKCG 91

Query: 264 CLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNC----FTFTS 319
              +A   FD M  +D ++WNT+I+G+ ++G  +    F K  +E     C     T T+
Sbjct: 92  EFRNAGNVFDYMPVRDTVSWNTMISGFLRNGDFDTSFKFFKQMTESNRVCCRFDKATLTT 151

Query: 320 IIAACATLA---ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           +++ C  L    + S  Q +H  +   G +  + + NALI  Y KC   S  +K+F EM 
Sbjct: 152 MLSGCDGLRLGISTSVTQMIHGLVFVGGFEREITVGNALITSYFKCECFSQGRKVFDEMI 211

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG-VRPDRIVFMAVLTACSHAGLVDEGL 435
           +R++VTWT+++ G   +   ++++ LF +M   G V P+ + +++ L ACS   ++ +G 
Sbjct: 212 ERNVVTWTAVISGLAQNEFYEDSLRLFAQMRCCGSVSPNVLTYLSSLMACSGLQVLRDGQ 271

Query: 436 KYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKS 475
           K    +    +  +  I   ++DL  + G +  A+++ +S
Sbjct: 272 KIHGLLWKLGMQSDLCIESALMDLYSKCGSLDAAWQIFES 311


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 180/569 (31%), Positives = 307/569 (53%), Gaps = 4/569 (0%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           +G   +   L+  Y   GL  +A  +F  + + D+V W+ +I          ++  +F  
Sbjct: 346 EGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHL 405

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M   +  PN +T+ S+L A     +L     +H    K G E  + V N+L+ +Y     
Sbjct: 406 MRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGC 465

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
             D  +L +  M  ++ +SW   ++G    G     L +F  ML EG   N Y+F   + 
Sbjct: 466 VHDGTKL-YESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILG 524

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           +C+    V +G+ +HA +IK+    N  V  +++DMY +   L DA+  F+ ++ +DL T
Sbjct: 525 SCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFT 584

Query: 283 WNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           W  II  Y ++   E  LN F +M+ E   PN FT    ++ C++LA+L  GQQ+H+ + 
Sbjct: 585 WTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVF 644

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           + G   ++ + +AL+DMYAKCG + +++ +F  +  RD + W +++ GY  +G G +A+ 
Sbjct: 645 KSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALT 704

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLL 460
            F  M+  G+ PD + F  +L+ACSH GLV+EG ++F SM  D+ ++P  +   C+VD+L
Sbjct: 705 AFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDIL 764

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520
           GR G+  E  + I+ M    +  +W  +LGA K H    LG+ AA ++ +L+P    +YI
Sbjct: 765 GRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYI 824

Query: 521 ILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYG 580
           +LSNI+A EG+W++  + R +M   G KKE G SW+E   +V  F+++D      Q ++ 
Sbjct: 825 LLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHL 884

Query: 581 VLEMLIRHMNETAYEPDIDCLIHDLEGET 609
            L+ L R +    Y P  + ++H++ GET
Sbjct: 885 KLDELDRELASIQYVPKTEYVLHNV-GET 912



 Score =  248 bits (633), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 139/444 (31%), Positives = 235/444 (52%), Gaps = 3/444 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + + L+  Y   G IE A  +F  MPE++ V+W V++ GY           +F  M+  
Sbjct: 249 FVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMEL 308

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           +V  N FTL++VLK C   K+L    ++H + IK G EG+ ++   L+D+Y+ C +++D 
Sbjct: 309 DVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAID- 367

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  VF  +K  + V W+ LIT     G     + +F  M L     N Y+    + A  +
Sbjct: 368 AIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATN 427

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
           TG + +G+ IHA V K+GF +++ V N+++ MY +  C+ D  + ++ M ++DLI+WN  
Sbjct: 428 TGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAY 487

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           ++G    G     L +F  M  E F PN +TF SI+ +C+ L  +  G+QVHA I++  L
Sbjct: 488 LSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQL 547

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           D N  +  ALIDMYAKC  + D+   F+ +S RDL TWT ++  Y     G++A+  F +
Sbjct: 548 DDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQ 607

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M + GV+P+       L+ CS    ++ G +    +       +  +   +VD+  + G 
Sbjct: 608 MQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGC 667

Query: 466 VKEAYELIKSMPFKPDESVWGPLL 489
           ++EA  L +++  + D   W  ++
Sbjct: 668 MEEAEALFEAL-IRRDTIAWNTII 690



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 121/406 (29%), Positives = 218/406 (53%), Gaps = 2/406 (0%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124
           AR +  +MP+RDVVSWT +I G  +    N +  +F EM    + PN FTL++ LKAC  
Sbjct: 166 ARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSL 225

Query: 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTT 184
             +L     +H  A K GL   ++V ++L+D+YA C   ++ A  +F  M  +NDV+W  
Sbjct: 226 CMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCG-EIELASKMFIGMPEQNDVTWNV 284

Query: 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG 244
           L+ GYA  G+  G L +F  M+   V+ N ++ +  ++ CA++  +  G++IH+ +IK G
Sbjct: 285 LLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCG 344

Query: 245 FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFS 303
           +  N  +   ++DMY +     DA   F  + + D++ W+ +I   ++ G S E + +F 
Sbjct: 345 YEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFH 404

Query: 304 KMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG 363
            M+     PN +T  S+++A      L  GQ +HA + + G + ++A++NAL+ MY K G
Sbjct: 405 LMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNG 464

Query: 364 NISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLT 423
            + D  K++  M DRDL++W + + G    G     + +F  M++ G  P+   F+++L 
Sbjct: 465 CVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILG 524

Query: 424 ACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
           +CS    V  G +    +    ++ N  +   ++D+  +   +++A
Sbjct: 525 SCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDA 570



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 105/362 (29%), Positives = 188/362 (51%), Gaps = 2/362 (0%)

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMK 175
           SS+L+ C   +SL  A  +HG+ +K+ +    ++  SL++VYA C  S   ARLV   M 
Sbjct: 116 SSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSA-YARLVLAKMP 174

Query: 176 WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKL 235
            ++ VSWT LI G    G     + +F+EM  EG+  N ++ +  ++AC+    +  GK 
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS 295
           +HA   K G   +L V ++++D+Y +   +  A++ F  M E++ +TWN ++ GY + G 
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGD 294

Query: 296 -SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
            +  L +F  M       N FT T+++  CA    L  GQ +H+ I++ G +GN  +   
Sbjct: 295 VTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCG 354

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
           L+DMY+KCG   D+  +F  +   D+V W++++      G  +E+I+LF  M      P+
Sbjct: 355 LVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPN 414

Query: 415 RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
           +    ++L+A ++ G +  G      +  Y    +  +   +V +  + G V +  +L +
Sbjct: 415 QYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYE 474

Query: 475 SM 476
           SM
Sbjct: 475 SM 476



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 159/314 (50%), Gaps = 5/314 (1%)

Query: 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276
           +S  +R CAS   +   K IH  ++K     +  +  S++++Y +    + A     +M 
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 277 EKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ 335
           ++D+++W  +I G    G +++ + +F +M++E   PN FT  + + AC+   AL  G+Q
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
           +HA   + GL  +L + +AL+D+YAKCG I  + K+F  M +++ VTW  ++ GY   G 
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGD 294

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455
               ++LF  M++  V+ +      VL  C+++  + +G +   S+         E  GC
Sbjct: 295 VTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQG-QVIHSLIIKCGYEGNEFIGC 353

Query: 456 -VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514
            +VD+  + G   +A  + K++  KPD  VW  L+  C + +  +   +    ++ L   
Sbjct: 354 GLVDMYSKCGLAIDAIGVFKTIK-KPDIVVWSALI-TCLDQQGQSEESIKLFHLMRLGDT 411

Query: 515 MMGTYIILSNIYAA 528
           +   Y I S + AA
Sbjct: 412 LPNQYTICSLLSAA 425


>gi|356532922|ref|XP_003535018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Glycine max]
          Length = 611

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 183/498 (36%), Positives = 295/498 (59%), Gaps = 7/498 (1%)

Query: 64  EARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACK 123
           +AR LFD +P +DV++WT +I+G+        A  +F++M+   + PNAFTLSS+LKAC 
Sbjct: 107 QARALFDALPFKDVIAWTSIISGHVQKAQPKTAVHLFLQMLGQAIEPNAFTLSSILKACS 166

Query: 124 GMKSLSNAALVHGMAIKEGLEGSI-YVENSLMDVYATCCISMDNARLVFNDMKWKNDVSW 182
            +++L     +H +    G   +   V  +L+D+Y    + +D+AR VF+++   + V W
Sbjct: 167 QLENLHLGKTLHAVVFIRGFHSNNNVVACALIDMYGRSRV-VDDARKVFDELPEPDYVCW 225

Query: 183 TTLITGYAHSGNGYGGLGVFKEMLLEGV--EMNPYSFSIAVRACASTGWVSFGKLIHAAV 240
           T +I+  A +      + VF  M   G+  E++ ++F   + AC + GW+  G+ +H  V
Sbjct: 226 TAVISTLARNDRFREAVRVFFAMHDGGLGLEVDGFTFGTLLNACGNLGWLRMGREVHGKV 285

Query: 241 IKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLN 300
           +  G   N+ V +S+LDMY +   +  A   FD + EK+ +    ++  Y  +G  EC +
Sbjct: 286 VTLGMKGNVFVESSLLDMYGKCGEVGCARVVFDGLEEKNEVALTAMLGVYCHNG--ECGS 343

Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360
           +   ++  R   + ++F +II AC+ LAA+  G +VH   VRRG   ++ + +AL+D+YA
Sbjct: 344 VLGLVREWRSMVDVYSFGTIIRACSGLAAVRQGNEVHCQYVRRGGWRDVVVESALVDLYA 403

Query: 361 KCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420
           KCG++  + ++FS M  R+L+TW +M+ G+  +G G+E +ELF+EMVK GVRPD I F+ 
Sbjct: 404 KCGSVDFAYRLFSRMEARNLITWNAMIGGFAQNGRGQEGVELFEEMVKEGVRPDWISFVN 463

Query: 421 VLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
           VL ACSH GLVD+G +YF  M  +Y + P    Y C++D+LGRA  ++EA  L++S   +
Sbjct: 464 VLFACSHNGLVDQGRRYFDLMRREYGIRPGVVHYTCMIDILGRAELIEEAESLLESADCR 523

Query: 480 PDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFR 539
            D S W  LLGAC +       +  A +++ L+P+   +Y++L NIY A GKW E  + R
Sbjct: 524 YDHSRWAVLLGACTKCSDYVTAERIAKKMIQLEPDFHLSYVLLGNIYRAVGKWNEALEIR 583

Query: 540 KIMRGMGSKKEVGMSWIE 557
           K+M   G KK  G SWIE
Sbjct: 584 KLMEERGVKKVPGKSWIE 601



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 189/380 (49%), Gaps = 8/380 (2%)

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMK 175
           +S+L+AC+   S      +H   +K G     +V NSL+ +Y+        AR +F+ + 
Sbjct: 57  ASLLQACRKAHSFPLGTHLHAHVLKSGFLADRFVANSLLSLYSKLSPHFSQARALFDALP 116

Query: 176 WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKL 235
           +K+ ++WT++I+G+         + +F +ML + +E N ++ S  ++AC+    +  GK 
Sbjct: 117 FKDVIAWTSIISGHVQKAQPKTAVHLFLQMLGQAIEPNAFTLSSILKACSQLENLHLGKT 176

Query: 236 IHAAVIKHGFGSNLPVMN-SILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG 294
           +HA V   GF SN  V+  +++DMY R   + DA + FDE+ E D + W  +I+   ++ 
Sbjct: 177 LHAVVFIRGFHSNNNVVACALIDMYGRSRVVDDARKVFDELPEPDYVCWTAVISTLARND 236

Query: 295 S-SECLNMFSKMKSE--RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLAL 351
              E + +F  M         + FTF +++ AC  L  L  G++VH  +V  G+ GN+ +
Sbjct: 237 RFREAVRVFFAMHDGGLGLEVDGFTFGTLLNACGNLGWLRMGREVHGKVVTLGMKGNVFV 296

Query: 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411
            ++L+DMY KCG +  ++ +F  + +++ V  T+M+  Y  +G     + L  E  +S V
Sbjct: 297 ESSLLDMYGKCGEVGCARVVFDGLEEKNEVALTAMLGVYCHNGECGSVLGLVREW-RSMV 355

Query: 412 RPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471
             D   F  ++ ACS    V +G +            +  +   +VDL  + G V  AY 
Sbjct: 356 --DVYSFGTIIRACSGLAAVRQGNEVHCQYVRRGGWRDVVVESALVDLYAKCGSVDFAYR 413

Query: 472 LIKSMPFKPDESVWGPLLGA 491
           L   M  + +   W  ++G 
Sbjct: 414 LFSRMEAR-NLITWNAMIGG 432



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 182/348 (52%), Gaps = 11/348 (3%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           +++A  LI  Y    ++++AR +FDE+PE D V WT +I+     +   +A  VF  M  
Sbjct: 191 NVVACALIDMYGRSRVVDDARKVFDELPEPDYVCWTAVISTLARNDRFREAVRVFFAMHD 250

Query: 106 N--EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
               +  + FT  ++L AC  +  L     VHG  +  G++G+++VE+SL+D+Y  C   
Sbjct: 251 GGLGLEVDGFTFGTLLNACGNLGWLRMGREVHGKVVTLGMKGNVFVESSLLDMYGKCG-E 309

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +  AR+VF+ ++ KN+V+ T ++  Y H+G     LG+ +E       ++ YSF   +RA
Sbjct: 310 VGCARVVFDGLEEKNEVALTAMLGVYCHNGECGSVLGLVREWR---SMVDVYSFGTIIRA 366

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C+    V  G  +H   ++ G   ++ V ++++D+Y +   +  A + F  M  ++LITW
Sbjct: 367 CSGLAAVRQGNEVHCQYVRRGGWRDVVVESALVDLYAKCGSVDFAYRLFSRMEARNLITW 426

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N +I G+ ++G   E + +F +M  E   P+  +F +++ AC+    +  G++ +  ++R
Sbjct: 427 NAMIGGFAQNGRGQEGVELFEEMVKEGVRPDWISFVNVLFACSHNGLVDQGRR-YFDLMR 485

Query: 343 R--GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMM 387
           R  G+   +     +ID+  +   I +++ +      R D   W  ++
Sbjct: 486 REYGIRPGVVHYTCMIDILGRAELIEEAESLLESADCRYDHSRWAVLL 533



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 134/260 (51%), Gaps = 5/260 (1%)

Query: 212 MNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC-LSDANQ 270
           + P  ++  ++AC        G  +HA V+K GF ++  V NS+L +Y +     S A  
Sbjct: 51  LKPVVYASLLQACRKAHSFPLGTHLHAHVLKSGFLADRFVANSLLSLYSKLSPHFSQARA 110

Query: 271 YFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAA 329
            FD +  KD+I W +II+G+ +K+     +++F +M  +   PN FT +SI+ AC+ L  
Sbjct: 111 LFDALPFKDVIAWTSIISGHVQKAQPKTAVHLFLQMLGQAIEPNAFTLSSILKACSQLEN 170

Query: 330 LSCGQQVHAGIVRRGL-DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMI 388
           L  G+ +HA +  RG    N  +A ALIDMY +   + D++K+F E+ + D V WT+++ 
Sbjct: 171 LHLGKTLHAVVFIRGFHSNNNVVACALIDMYGRSRVVDDARKVFDELPEPDYVCWTAVIS 230

Query: 389 GYGAHGHGKEAIELFDEMVKS--GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV 446
               +   +EA+ +F  M     G+  D   F  +L AC + G +  G +    +    +
Sbjct: 231 TLARNDRFREAVRVFFAMHDGGLGLEVDGFTFGTLLNACGNLGWLRMGREVHGKVVTLGM 290

Query: 447 NPNKEIYGCVVDLLGRAGRV 466
             N  +   ++D+ G+ G V
Sbjct: 291 KGNVFVESSLLDMYGKCGEV 310


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  337 bits (865), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 200/577 (34%), Positives = 323/577 (55%), Gaps = 32/577 (5%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P+  ++    LI  Y    ++ EAR  FD MPER+VVSWT M+ GY      ++A T+F
Sbjct: 73  MPERNTVSWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLF 132

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNA-ALVHGMAIKEGLEGSIYVENSLMDVYAT 159
            +M       N  + + +L     ++ +  A  L   M +K+     +    +++  Y  
Sbjct: 133 WQMPEK----NVVSWTVMLGGLIQVRRIDEARGLFDIMPVKD-----VVARTNMISGYCQ 183

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
               +  AR +F++M  +N +SWTT+I+GY  +G     + V +++     E N  S++ 
Sbjct: 184 EG-RLAEARELFDEMPRRNVISWTTMISGYVQNGQ----VDVARKLFEVMPEKNEVSWTA 238

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVM-NSILDMYCRFDCLSDANQYFDEMTEK 278
            +      G+   G++  A+ +         V  N+++  + +   ++ A Q FD++ EK
Sbjct: 239 ML-----MGYTQGGRIEEASELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREK 293

Query: 279 DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
           D  TW+ +I  YE+ G   E LN+F+ M+ E    N  +  S+++ CA+LA+L  G+QVH
Sbjct: 294 DDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVH 353

Query: 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
           A +V+   D ++ +A+ LI MY KCG++  +++IF   S +D+V W S++ GY  HG  +
Sbjct: 354 AELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVE 413

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCV 456
           EA+++F EM  SG+  D + F+ VL+ACS+ G V EGL+ F+SM + Y V P  E Y C+
Sbjct: 414 EALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACM 473

Query: 457 VDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMM 516
           VDLLGRAG V +A +LI+ MP + D  +WG LLGAC+ H   NL ++AA ++L L+P   
Sbjct: 474 VDLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQLEPKNA 533

Query: 517 GTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQ 576
           G YI+LSNIYA++G+W + A+ R+ MR     K  G SWIEV  +V  F      G  T+
Sbjct: 534 GPYILLSNIYASKGRWGDVAELRRNMRVKKVSKSPGCSWIEVEKRVHMFTG----GVSTK 589

Query: 577 Y-----VYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           +     +  +LE L   + E  Y PD   ++HD++ E
Sbjct: 590 HPELSSIMKMLEKLDGMLREAGYYPDSSFVLHDVDEE 626



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 177/352 (50%), Gaps = 14/352 (3%)

Query: 40  LIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTV 99
           ++P    +  TN+I  Y  EG + EAR LFDEMP R+V+SWT MI+GY      + A  +
Sbjct: 165 IMPVKDVVARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKL 224

Query: 100 FVEMV-RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA 158
           F  M  +NEV+  A     ++   +G +    + L   M +K     ++   N+++  + 
Sbjct: 225 FEVMPEKNEVSWTAM----LMGYTQGGRIEEASELFDAMPVK-----AVVACNAMILGFG 275

Query: 159 TCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFS 218
                +  AR VF+ ++ K+D +W+ +I  Y   G     L +F  M  EGV+ N  S  
Sbjct: 276 QNG-EVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLI 334

Query: 219 IAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK 278
             +  CAS   +  G+ +HA ++K  F S++ V + ++ MY +   L  A Q FD  + K
Sbjct: 335 SVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPK 394

Query: 279 DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
           D++ WN+II GY + G   E L +F +M S   + +  TF  +++AC+    +  G ++ 
Sbjct: 395 DIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIF 454

Query: 338 AGIVRRGL-DGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMM 387
             +  + L +        ++D+  + G ++D+  +  +M  + D + W +++
Sbjct: 455 ESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALL 506



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 104/221 (47%), Gaps = 24/221 (10%)

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
           N+ I  YA+ G I  ++++F EM D+ +V+W SM+ GY  +   +EA  LFD+M      
Sbjct: 20  NSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKM------ 73

Query: 413 PDR--IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470
           P+R  + +  +++      +V E  K F +M + NV      +  +V    + G V EA 
Sbjct: 74  PERNTVSWNGLISGYVKNRMVSEARKAFDTMPERNVVS----WTAMVRGYVQEGLVSEAE 129

Query: 471 ELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEG 530
            L   MP K   S W  +LG   + R  +  +     ++ +K  +  T +I    Y  EG
Sbjct: 130 TLFWQMPEKNVVS-WTVMLGGLIQVRRIDEAR-GLFDIMPVKDVVARTNMISG--YCQEG 185

Query: 531 KWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKM 571
           +    A+ R++   M  +  +  SW  +   + G++ N ++
Sbjct: 186 R---LAEARELFDEMPRRNVI--SWTTM---ISGYVQNGQV 218


>gi|302143938|emb|CBI23043.3| unnamed protein product [Vitis vinifera]
          Length = 539

 Score =  337 bits (865), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 187/536 (34%), Positives = 304/536 (56%), Gaps = 11/536 (2%)

Query: 71  EMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSN 130
           E  + ++VSW+ +I G+       +A  +   M      PNA TL+SVL AC  +++L+ 
Sbjct: 5   ENSKPNLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLNL 64

Query: 131 AALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYA 190
              +HG   + G   + +V N L+DVY  C   M +A  +F+    KN VS+ T+I GY 
Sbjct: 65  GKEIHGYVTRHGFMSNPFVVNGLVDVYRRCA-DMGSALKIFSGFSVKNVVSYNTMIVGYC 123

Query: 191 HSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGS-NL 249
            +GN      +F +M L G +   ++  I+  A      +    L  A +   G    + 
Sbjct: 124 ENGNVEKAKELFDQMELVGKDTISWNSMISGYA---DNLLKCEDLKAAQLAFDGVTERDT 180

Query: 250 PVMNSILDMYCRFDCLSDANQYFDEMT----EKDLITWNTIIAGYEKSGSSE-CLNMFSK 304
              N ++  Y   + L +      +M     E ++ TWN II+G+ ++G +E  L +F++
Sbjct: 181 ATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTE 240

Query: 305 MKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGN 364
           M++    P+ +T   I+ ACA LA ++ G+QVHA  +R+G + ++ +  AL+DMYAKCG+
Sbjct: 241 MQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGS 300

Query: 365 ISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTA 424
           I  + ++++ +S+ +LV+  +M+  Y  HGHG E I LF  M+ +G RPD + F++VL++
Sbjct: 301 IKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSS 360

Query: 425 CSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESV 484
           C HAG V+ G ++F  M  YNV P+ + Y C+VDLL RAGR+ EAYEL+K +P KPD  +
Sbjct: 361 CVHAGAVETGHEFFDLMTYYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVM 420

Query: 485 WGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544
           WG LLG C       LG++AA  +++L+PN  G Y++L+N+YA  G+W +  + R++++ 
Sbjct: 421 WGALLGGCVIWGNVELGEIAAESLIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQMIKD 480

Query: 545 MGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDC 600
            G  K  G SWIE R+ +  F++ DK    T+ +Y  L+ L  HM  T  E   +C
Sbjct: 481 RGMHKSPGCSWIEDREDIHVFLSCDKSHEKTEDIYTTLDNLNTHM-RTGLEHVYNC 535



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/336 (22%), Positives = 157/336 (46%), Gaps = 19/336 (5%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV---RNEVNPNAFT--LSSVL 119
           A  +F     ++VVS+  MI GY       +A  +F +M    ++ ++ N+     +  L
Sbjct: 100 ALKIFSGFSVKNVVSYNTMIVGYCENGNVEKAKELFDQMELVGKDTISWNSMISGYADNL 159

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK-- 177
             C+ +K+         +A     E      N L+  YA CC  ++N + +   MK    
Sbjct: 160 LKCEDLKAAQ-------LAFDGVTERDTATWNVLISGYA-CCNQLENIQNLIQKMKGDGF 211

Query: 178 --NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKL 235
             N  +W  +I+G+  +G+    L +F EM    +  + Y+  I + ACA    ++ GK 
Sbjct: 212 EPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQ 271

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG- 294
           +HA  I+ G+  ++ +  +++DMY +   +  A Q ++ ++  +L++ N ++  Y   G 
Sbjct: 272 VHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGH 331

Query: 295 SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
             E + +F  M    F P+  TF S++++C    A+  G +    +    +  +L     
Sbjct: 332 GDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLMTYYNVTPSLKHYTC 391

Query: 355 LIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIG 389
           ++D+ ++ G + ++ ++  ++  + D V W +++ G
Sbjct: 392 IVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLGG 427



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 127/284 (44%), Gaps = 41/284 (14%)

Query: 46  SILATNLIKSYFDEGL----IEEARTLFDEMPERDVVSWTVMIAGYTSF----------- 90
           +I   ++I  Y D  L    ++ A+  FD + ERD  +W V+I+GY              
Sbjct: 145 TISWNSMISGYADNLLKCEDLKAAQLAFDGVTERDTATWNVLISGYACCNQLENIQNLIQ 204

Query: 91  -----------------------NCHNQ-AWTVFVEMVRNEVNPNAFTLSSVLKACKGMK 126
                                  N HN+ A  +F EM  + + P+ +T+  +L AC  + 
Sbjct: 205 KMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLA 264

Query: 127 SLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLI 186
           +++    VH  +I++G E  +++  +L+D+YA C  S+ +A  V+N +   N VS   ++
Sbjct: 265 TIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCG-SIKHAMQVYNRISNPNLVSQNAML 323

Query: 187 TGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFG 246
           T YA  G+G  G+ +F+ ML  G   +  +F   + +C   G V  G      +  +   
Sbjct: 324 TAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLMTYYNVT 383

Query: 247 SNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLITWNTIIAG 289
            +L     I+D+  R   L +A +   ++  K D + W  ++ G
Sbjct: 384 PSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLGG 427



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 58/121 (47%)

Query: 373 SEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD 432
           SE S  +LV+W++++ G+  +G+ KEA+EL   M  +G  P+     +VL AC+    ++
Sbjct: 4   SENSKPNLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLN 63

Query: 433 EGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGAC 492
            G +    +  +    N  +   +VD+  R   +  A ++      K   S    ++G C
Sbjct: 64  LGKEIHGYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYC 123

Query: 493 K 493
           +
Sbjct: 124 E 124


>gi|357478575|ref|XP_003609573.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510628|gb|AES91770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 665

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 204/613 (33%), Positives = 318/613 (51%), Gaps = 73/613 (11%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR- 105
           I AT+ I S    G I  AR LFDEMPERD V+W  M+  Y+    + Q + +F  M R 
Sbjct: 6   IRATSEIVSLARSGRICHARKLFDEMPERDTVAWNAMLTAYSRLGLYQQTFDLFDSMRRI 65

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           ++  P+ F+ S+ + +C G   +     +H + +  G + S+ V N+L+D+Y  C  + +
Sbjct: 66  SDSKPDNFSYSAAINSCAGASDIRFGTKLHSLVVVSGYQSSLPVANALIDMYGKC-FNPN 124

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHS-------------------------------GN 194
           +AR VF++M + N+V+W +L+  YA++                               G 
Sbjct: 125 DARKVFDEMNYSNEVTWCSLLFAYANTCRFDMAFEIFRSMPEKVEIAWNIIIAAHARCGE 184

Query: 195 GYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNS 254
               L +FKEM     + + ++FS  + AC  +     G ++H  VIK G+ + + V NS
Sbjct: 185 VEACLHLFKEMCENLYQPDQWTFSALMSACTESMESLHGCMMHCFVIKSGWSTAMEVNNS 244

Query: 255 ILDMYCRFDCLSDA----------NQY---------------------FDEMTEKDLITW 283
           I+  Y + +C  DA          NQ                      F +  EK++++W
Sbjct: 245 IVSFYAKLECHGDAVKVFNSGGAFNQVSWNAIIDAHMKVGDTQKALLAFQQAPEKNIVSW 304

Query: 284 NTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
            ++I GY ++G+ +  L++F  MK   F  +     +++ ACA+LA L  G+ VH+ I+ 
Sbjct: 305 TSMIVGYTRNGNGDLALSLFLDMKRNSFQLDDLVAGAVLHACASLAILVHGKMVHSCIIH 364

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            GLD  L + N+LI+MYAKCG+I  S+     ++D+DLV+W SM+  +G +G G EAI +
Sbjct: 365 LGLDKYLFVGNSLINMYAKCGDIEGSKLALRGINDKDLVSWNSMLFAFGLNGRGNEAICM 424

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLG 461
           F EMV SGVRPD + F  +L  CSH GL+DEG  +F+SM+ +Y +    +   C+VD+LG
Sbjct: 425 FREMVASGVRPDEVTFTGLLMTCSHLGLIDEGFAFFQSMSLEYGLVQGMDHVACMVDMLG 484

Query: 462 RAGRVKEAYELIK--SMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
           R G V EA  L +  S   +   +    LLGAC  H     G      V +L+P     Y
Sbjct: 485 RGGYVAEAQSLARKYSKTSRDKTNSCEVLLGACHAHGDLGTGSSVGEYVKNLEPKKEVGY 544

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDK----MGSHT 575
           ++LSN+Y A GKW+E    RK M   G KK  G SWIE+R+ V  F++ +     M   +
Sbjct: 545 VLLSNMYCASGKWKEAEMVRKEMMDQGVKKVPGCSWIEIRNVVTAFVSGNNLYPCMADIS 604

Query: 576 QYVYGVLEMLIRH 588
           + +Y  LE+ +RH
Sbjct: 605 KILY-FLELEMRH 616



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 2/144 (1%)

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           L  A + I   A+ G I  ++K+F EM +RD V W +M+  Y   G  ++  +LFD M +
Sbjct: 5   LIRATSEIVSLARSGRICHARKLFDEMPERDTVAWNAMLTAYSRLGLYQQTFDLFDSMRR 64

Query: 409 -SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
            S  +PD   + A + +C+ A  +  G K    +       +  +   ++D+ G+     
Sbjct: 65  ISDSKPDNFSYSAAINSCAGASDIRFGTKLHSLVVVSGYQSSLPVANALIDMYGKCFNPN 124

Query: 468 EAYELIKSMPFKPDESVWGPLLGA 491
           +A ++   M +  +E  W  LL A
Sbjct: 125 DARKVFDEMNYS-NEVTWCSLLFA 147


>gi|50251760|dbj|BAD27693.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|222623393|gb|EEE57525.1| hypothetical protein OsJ_07836 [Oryza sativa Japonica Group]
          Length = 667

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 190/524 (36%), Positives = 289/524 (55%), Gaps = 6/524 (1%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G + +   LI  Y   G +  A  +F  M  R VVSW  +IAG        +A  VF EM
Sbjct: 141 GDTYVQNALISMYMSCGDVGAAEAVFGAMRNRTVVSWNAVIAGCVKNGYAERALEVFGEM 200

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
             + V  +  T+ SVL AC   K L+    VH +   +GL   + V+N+L+D+Y  C  S
Sbjct: 201 AADGVGIDRATVVSVLPACAQAKDLNTGRAVHRLVEDKGLGDYVAVKNALIDMYGKC-RS 259

Query: 164 MDNARLVFNDMKWKNDV-SWTTLITGYAHSGNGYGGLGVFKEMLLEGVEM-NPYSFSIAV 221
           +++AR VF+  K   DV SWT +I  Y  +   +  + +  +ML+ G    N  +    +
Sbjct: 260 LEDARRVFDHCKHDKDVVSWTAMIGAYVLNDRAFEAISLGCQMLMSGAAWPNGVTMVYLL 319

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
            ACAS       K  HA  I+ G  S++ V  +++D Y R   +       +  + +   
Sbjct: 320 SACASMPSGKHAKCTHALCIRLGLKSDIAVETALIDAYARCGKMKLMRLTLERGSWRAE- 378

Query: 282 TWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           TWN  ++GY  SG   + + +F +M +E   P+  T  SI+ A A  A L  G+ +H  +
Sbjct: 379 TWNAALSGYTVSGREKKAIELFKRMIAESVRPDSATMASILPAYAESADLKEGKNIHCFL 438

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           +  G   +  +A  LID+Y+K G++  +  +F  + ++D+V WT+++ GYG HGH + AI
Sbjct: 439 LTLGFLRSTEIATGLIDVYSKAGDLDAAWALFQWLPEKDVVAWTTIIAGYGIHGHARTAI 498

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDL 459
            L+D MV+SG +P+ +    +L ACSHAG++DEG+K FK M N + + PN E Y C+VD+
Sbjct: 499 LLYDRMVESGGKPNTVTIATLLYACSHAGMIDEGIKVFKDMRNVHGLMPNGEHYSCLVDM 558

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
           LGRAGR++EA+ LI+ MPF+P  SVWG LLGAC  H+    G++AA R+  L P   G+Y
Sbjct: 559 LGRAGRIEEAHRLIQDMPFEPSTSVWGALLGACVLHKNVEFGEVAAKRLFQLDPENTGSY 618

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVC 563
           ++L NIYAA  +W +    R++M   G  KE G S +E R   C
Sbjct: 619 VLLGNIYAAADRWRDVQDVRRMMVERGLLKEPGSSLVEARSVQC 662



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 144/500 (28%), Positives = 234/500 (46%), Gaps = 18/500 (3%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWT-VMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
           L   Y   G    A  L  +MP+   VS++  ++  YT   CH +A  V+  M   +   
Sbjct: 51  LFMVYCACGRPSSAHNLLAQMPQPPPVSFSNSLLRSYTGLGCHREALAVYSAMRAFD--- 107

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
              T     KAC G++   +   VH  A+  G  G  YV+N+L+ +Y +C   +  A  V
Sbjct: 108 -HLTFPFAAKACAGLRLGRHGRAVHCRALAAGFGGDTYVQNALISMYMSCG-DVGAAEAV 165

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F  M+ +  VSW  +I G   +G     L VF EM  +GV ++  +    + ACA    +
Sbjct: 166 FGAMRNRTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQAKDL 225

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLITWNTIIAG 289
           + G+ +H  V   G G  + V N+++DMY +   L DA + FD    +KD+++W  +I  
Sbjct: 226 NTGRAVHRLVEDKGLGDYVAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTAMIGA 285

Query: 290 YEKSGSS-ECLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           Y  +  + E +++  +M  S    PN  T   +++ACA++ +    +  HA  +R GL  
Sbjct: 286 YVLNDRAFEAISLGCQMLMSGAAWPNGVTMVYLLSACASMPSGKHAKCTHALCIRLGLKS 345

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           ++A+  ALID YA+CG +   +      S R   TW + + GY   G  K+AIELF  M+
Sbjct: 346 DIAVETALIDAYARCGKMKLMRLTLERGSWR-AETWNAALSGYTVSGREKKAIELFKRMI 404

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
              VRPD     ++L A + +  + EG      +       + EI   ++D+  +AG + 
Sbjct: 405 AESVRPDSATMASILPAYAESADLKEGKNIHCFLLTLGFLRSTEIATGLIDVYSKAGDLD 464

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDL--KPNMMGTYIILSNI 525
            A+ L + +P K D   W  ++     H       L   R+++   KPN   T  I + +
Sbjct: 465 AAWALFQWLPEK-DVVAWTTIIAGYGIHGHARTAILLYDRMVESGGKPN---TVTIATLL 520

Query: 526 YAAE--GKWEEFAKFRKIMR 543
           YA    G  +E  K  K MR
Sbjct: 521 YACSHAGMIDEGIKVFKDMR 540



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 119/242 (49%), Gaps = 6/242 (2%)

Query: 252 MNSILDMYCRFDCLSDANQYFDEMTEKDLITW-NTIIAGYEKSG-SSECLNMFSKMKSER 309
           ++ +  +YC     S A+    +M +   +++ N+++  Y   G   E L ++S M++  
Sbjct: 48  LHPLFMVYCACGRPSSAHNLLAQMPQPPPVSFSNSLLRSYTGLGCHREALAVYSAMRA-- 105

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
           F    F F +   ACA L     G+ VH   +  G  G+  + NALI MY  CG++  ++
Sbjct: 106 FDHLTFPFAA--KACAGLRLGRHGRAVHCRALAAGFGGDTYVQNALISMYMSCGDVGAAE 163

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
            +F  M +R +V+W +++ G   +G+ + A+E+F EM   GV  DR   ++VL AC+ A 
Sbjct: 164 AVFGAMRNRTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQAK 223

Query: 430 LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
            ++ G    + + D  +     +   ++D+ G+   +++A  +        D   W  ++
Sbjct: 224 DLNTGRAVHRLVEDKGLGDYVAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTAMI 283

Query: 490 GA 491
           GA
Sbjct: 284 GA 285


>gi|356522600|ref|XP_003529934.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial-like [Glycine max]
          Length = 644

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 180/555 (32%), Positives = 309/555 (55%), Gaps = 10/555 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHN-------QAWTVF 100
           L   ++  Y      ++A  LF+E+  R+VVSW ++I G       N       Q ++ F
Sbjct: 87  LQNQILGVYLKCTEADDAEKLFEELSVRNVVSWNILIRGIVGCGDANENDSNQQQCFSYF 146

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
             M+   V P++ T + +   C     +     +H  A+K GL+   +V + L+D+YA C
Sbjct: 147 KRMLLELVVPDSTTFNGLFGVCVKFHDIDMGFQLHCFAVKLGLDLDCFVGSVLVDLYAQC 206

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
            + ++NAR VF  ++ ++ V W  +I+ YA +        +F  M  +G   + ++FS  
Sbjct: 207 GL-VENARRVFLVVQHRDLVVWNVMISCYALNCLPEEAFVMFNLMRWDGANGDEFTFSNL 265

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           +  C S  +  FGK +H  +++  F S++ V +++++MY + + + DA++ FD M  +++
Sbjct: 266 LSICDSLEYYDFGKQVHGHILRLSFDSDVLVASALINMYAKNENIVDAHRLFDNMVIRNV 325

Query: 281 ITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           + WNTII GY  +   +E + +  +M  E FSP+  T +S I+ C  ++A++   Q HA 
Sbjct: 326 VAWNTIIVGYGNRREGNEVMKLLREMLREGFSPDELTISSTISLCGYVSAITETMQAHAF 385

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
            V+      L++AN+LI  Y+KCG+I+ + K F    + DLV+WTS++  Y  HG  KEA
Sbjct: 386 AVKSSFQEFLSVANSLISAYSKCGSITSACKCFRLTREPDLVSWTSLINAYAFHGLAKEA 445

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVD 458
            E+F++M+  G+ PD+I F+ VL+ACSH GLV +GL YF  M   Y + P+   Y C+VD
Sbjct: 446 TEVFEKMLSCGIIPDQISFLGVLSACSHCGLVTKGLHYFNLMTSVYKIVPDSGHYTCLVD 505

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518
           LLGR G + EA+E ++SMP + + +  G  + +C  H    L K AA ++  ++P     
Sbjct: 506 LLGRYGLINEAFEFLRSMPMEAESNTLGAFVASCNLHANIGLAKWAAEKLFTIEPEKNVN 565

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
           Y ++SNIYA+   W +  + R++M      +  G SWIE+ ++V  F++NDK+      +
Sbjct: 566 YAVMSNIYASHRHWSDVERVRRMMGNKCDARVPGCSWIEITNQVHSFVSNDKIHPKALEM 625

Query: 579 YGVLEMLIRHMNETA 593
           +  L+ML+  M E +
Sbjct: 626 HATLKMLLWPMKEKS 640



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 101/390 (25%), Positives = 185/390 (47%), Gaps = 10/390 (2%)

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMK 175
           ++ LK       L     +H   IK G    + ++N ++ VY  C    D+A  +F ++ 
Sbjct: 54  ANALKVSAKRALLPEGKQLHAHLIKFGFCHVLSLQNQILGVYLKC-TEADDAEKLFEELS 112

Query: 176 WKNDVSWTTLITGYAHSG-------NGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            +N VSW  LI G    G       N       FK MLLE V  +  +F+     C    
Sbjct: 113 VRNVVSWNILIRGIVGCGDANENDSNQQQCFSYFKRMLLELVVPDSTTFNGLFGVCVKFH 172

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            +  G  +H   +K G   +  V + ++D+Y +   + +A + F  +  +DL+ WN +I+
Sbjct: 173 DIDMGFQLHCFAVKLGLDLDCFVGSVLVDLYAQCGLVENARRVFLVVQHRDLVVWNVMIS 232

Query: 289 GYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
            Y  +    E   MF+ M+ +  + + FTF+++++ C +L     G+QVH  I+R   D 
Sbjct: 233 CYALNCLPEEAFVMFNLMRWDGANGDEFTFSNLLSICDSLEYYDFGKQVHGHILRLSFDS 292

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           ++ +A+ALI+MYAK  NI D+ ++F  M  R++V W ++++GYG    G E ++L  EM+
Sbjct: 293 DVLVASALINMYAKNENIVDAHRLFDNMVIRNVVAWNTIIVGYGNRREGNEVMKLLREML 352

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
           + G  PD +   + ++ C +   + E ++        +      +   ++    + G + 
Sbjct: 353 REGFSPDELTISSTISLCGYVSAITETMQAHAFAVKSSFQEFLSVANSLISAYSKCGSIT 412

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRL 497
            A +  + +  +PD   W  L+ A   H L
Sbjct: 413 SACKCFR-LTREPDLVSWTSLINAYAFHGL 441



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 95/187 (50%), Gaps = 1/187 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++A+ LI  Y     I +A  LFD M  R+VV+W  +I GY +    N+   +  EM+R 
Sbjct: 295 LVASALINMYAKNENIVDAHRLFDNMVIRNVVAWNTIIVGYGNRREGNEVMKLLREMLRE 354

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
             +P+  T+SS +  C  + +++     H  A+K   +  + V NSL+  Y+ C  S+ +
Sbjct: 355 GFSPDELTISSTISLCGYVSAITETMQAHAFAVKSSFQEFLSVANSLISAYSKCG-SITS 413

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A   F   +  + VSWT+LI  YA  G       VF++ML  G+  +  SF   + AC+ 
Sbjct: 414 ACKCFRLTREPDLVSWTSLINAYAFHGLAKEATEVFEKMLSCGIIPDQISFLGVLSACSH 473

Query: 227 TGWVSFG 233
            G V+ G
Sbjct: 474 CGLVTKG 480



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 8/181 (4%)

Query: 325 ATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWT 384
           A  A L  G+Q+HA +++ G    L+L N ++ +Y KC    D++K+F E+S R++V+W 
Sbjct: 61  AKRALLPEGKQLHAHLIKFGFCHVLSLQNQILGVYLKCTEADDAEKLFEELSVRNVVSWN 120

Query: 385 SMMIGYGAHGHGKE-------AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY 437
            ++ G    G   E           F  M+   V PD   F  +   C     +D G + 
Sbjct: 121 ILIRGIVGCGDANENDSNQQQCFSYFKRMLLELVVPDSTTFNGLFGVCVKFHDIDMGFQL 180

Query: 438 FKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
                   ++ +  +   +VDL  + G V+ A  +   +  + D  VW  ++     + L
Sbjct: 181 HCFAVKLGLDLDCFVGSVLVDLYAQCGLVENARRVFLVVQHR-DLVVWNVMISCYALNCL 239

Query: 498 P 498
           P
Sbjct: 240 P 240


>gi|356537359|ref|XP_003537195.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g13770, mitochondrial-like
           [Glycine max]
          Length = 600

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 177/512 (34%), Positives = 289/512 (56%), Gaps = 4/512 (0%)

Query: 100 FVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
            ++M    ++ N    ++VL  C   ++      VH   IK      +Y+   L+ V+ T
Sbjct: 14  LIQMTLXGLDMNLQDYNTVLNECVSKRAFKEGQRVHAHTIKTHYLPCVYLWTRLI-VFYT 72

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
            C S+ +AR V N+M  +N VSWT +I+ Y+  G     L +  ++L  G E N ++F+ 
Sbjct: 73  KCDSLGDARHVLNEMPERNVVSWTAMISAYSQRGYASQALSILVQILRSGTESNEFTFAT 132

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
                         + IH+ +IK  F +++ V +S+LDMY +   + +A   F+ + E+D
Sbjct: 133 MPYFMYRFLGFCLREAIHSLIIKLNFKAHVYVGSSLLDMYAKDGKIHEARGIFECLPERD 192

Query: 280 LITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           +++   II+GY +    E L +F +++ E    N  T+TS++ A + LAAL  G+QVH  
Sbjct: 193 VVSCTAIISGYAQLDLDEELELFLRLQREGMXSNYVTYTSVLTALSGLAALDHGKQVHNH 252

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
           ++   +   + L N+LIDMY+KCGN++ +++IF  M +R +++W +M++GY  HG  +E 
Sbjct: 253 LLCSEVPSFVILQNSLIDMYSKCGNLTYARRIFDTMRERTVISWNAMLVGYSKHGERREV 312

Query: 400 IELFDEMV-KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND--YNVNPNKEIYGCV 456
           +ELF+ M  ++ V+PD +  +AVL+ CSH G  D+G+  F  M     +V P+ + YGCV
Sbjct: 313 LELFNLMRDENKVKPDSVTVLAVLSGCSHGGQEDKGMDIFYDMTSGKISVQPDTKRYGCV 372

Query: 457 VDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMM 516
           VDLLGRAGRV+EA+E IK +PF+P  ++ G LLGAC  H    +G+    R+L+ +P   
Sbjct: 373 VDLLGRAGRVEEAFEFIKKIPFEPSAAICGCLLGACSVHSNLGIGEFVGHRLLEFEPENA 432

Query: 517 GTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQ 576
           G Y+ILSN+YA+ G+WE+    R +M      KE G S IEV   +  F  +D      +
Sbjct: 433 GNYVILSNLYASAGRWEDVTSLRNLMLKKAVTKEPGRSLIEVDQVLQTFHPSDCSHPRRE 492

Query: 577 YVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
            V    + L+    E  Y PD+ C++HD++ E
Sbjct: 493 EVSAKXQELLVRFKEAGYFPDLSCVLHDVDEE 524



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV-R 105
           IL  +LI  Y   G +  AR +FD M ER V+SW  M+ GY+      +   +F  M   
Sbjct: 263 ILQNSLIDMYSKCGNLTYARRIFDTMRERTVISWNAMLVGYSKHGERREVLELFNLMRDE 322

Query: 106 NEVNPNAFTLSSVLKAC 122
           N+V P++ T+ +VL  C
Sbjct: 323 NKVKPDSVTVLAVLSGC 339


>gi|326522488|dbj|BAK07706.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 799

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 195/627 (31%), Positives = 326/627 (51%), Gaps = 68/627 (10%)

Query: 27  QSVKKSSIQSDPPL---IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVM 83
           + VK   I S   L   +P+   +  T ++ +    G + EA  L+++ P   V  +T  
Sbjct: 161 EHVKAGDIASARGLFDGMPERSVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTAT 220

Query: 84  IAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGL 143
           I+G+     H+ A  VF +MV   V PN  T   ++KAC G      A  + G AIK   
Sbjct: 221 ISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIKSNF 280

Query: 144 -EGSIYVENSL-------------------------------MDVYATCCISMDNARLVF 171
            E SI V+NSL                               +DVY+     +D AR V 
Sbjct: 281 FESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESG-DLDGARRVL 339

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           + M  +N+VSW TLI  +   GN    + ++ +ML +G   N   FS  + ACA+   + 
Sbjct: 340 DAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATLEDLR 399

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            G  IHA  +K G  +N+ V +S++DMYC+     DA   FD + EK+++ WN++ +GY 
Sbjct: 400 GGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLASGYS 459

Query: 292 KSGS-SECLNMFSKMKSERFS-------------------------------PNCFTFTS 319
            +G   E + +F KM +   +                               P   TF+S
Sbjct: 460 YNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFSS 519

Query: 320 IIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD 379
           ++ ACA L +L  G+  HA  ++ G++ ++ +  AL DMYAK G++  S+++F +M +R+
Sbjct: 520 VLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERN 579

Query: 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439
            VTWT+M+ G   +G  +E+I LF++M+ +G+ P+   F+A+L ACSH GLV++ + YF+
Sbjct: 580 DVTWTAMIQGLAENGLAEESILLFEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHYFE 639

Query: 440 SMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN 499
            M  + ++P ++ Y C+VD+L RAGR+ EA  L+   P K + + W  LL AC  ++   
Sbjct: 640 KMQAWGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSEANSWAALLSACNTYKNEE 699

Query: 500 LGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVR 559
           +G+ AA R+ +L  +    Y++LSN+YA+ G+W++ A+ R +M+G   KK+ G SW++VR
Sbjct: 700 IGERAAKRLHELGKDNTAGYVLLSNMYASCGRWKDAARIRVLMKGTTLKKDGGCSWVQVR 759

Query: 560 DKVCGFIANDKMGSHTQYVYGVLEMLI 586
            +   F + +     +  +  +L++L+
Sbjct: 760 GQYHAFFSWEAKHPLSMEINEILDLLL 786



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 77/192 (40%), Gaps = 39/192 (20%)

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE--------- 405
           ++  + K G+I+ ++ +F  M +R +V++T+M+      G   EA+EL+++         
Sbjct: 158 MVHEHVKAGDIASARGLFDGMPERSVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFF 217

Query: 406 ----------------------MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND 443
                                 MV  GVRP+ I F+ ++ AC  AG     +    S   
Sbjct: 218 TATISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIK 277

Query: 444 YN-VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGK 502
            N    + E+   ++ L  R G    A ++   M  K D   W  LL    E      G 
Sbjct: 278 SNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVK-DVVSWTALLDVYSES-----GD 331

Query: 503 L-AALRVLDLKP 513
           L  A RVLD  P
Sbjct: 332 LDGARRVLDAMP 343


>gi|357128440|ref|XP_003565881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Brachypodium distachyon]
          Length = 682

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 190/564 (33%), Positives = 315/564 (55%), Gaps = 6/564 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I   +LI  Y   G +  AR +FD MP R+ VS  ++++GY S   H+ A  +   +   
Sbjct: 46  IQHNHLIAFYGKCGRLGLARQMFDAMPSRNAVSGNLLMSGYASAGRHSDALAL---LKAA 102

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           + + N + LS+ L A   ++S       HG A+K GL+   YV N+++ +Y  C   +++
Sbjct: 103 DFSLNEYVLSTALSAAAHVRSYGMGRQCHGYAVKSGLQEHPYVCNAVLHMYCQCA-HVED 161

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  VF ++   +  ++ ++I G+   G   G + + + M+ E  + +  S+   +  CAS
Sbjct: 162 AVKVFENVSGFDIFAFNSMINGFLDLGEFDGSIRIVRSMVGEVEQWDHVSYVAVLGHCAS 221

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
           T  +  G  +HA  +K     N+ V ++++DMY + DC  DA+  F+ + EK++++W  +
Sbjct: 222 TKELLLGCQVHAQALKRRLEQNVYVGSALVDMYGKCDCARDAHSAFEVLPEKNVVSWTAV 281

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           +  Y ++   E  L +F  ++ E   PN FT+   + +CA LAAL  G  + A  ++ G 
Sbjct: 282 MTAYTQNERFEDALQLFLDLEIEGVRPNEFTYAVALNSCAGLAALKNGNALSASAMKTGH 341

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
            G L++ NAL++MY+K G+I D+ ++F  M  RD+V+W S++IGY  HG  +EA+ +F +
Sbjct: 342 WGALSVCNALMNMYSKSGSIHDAWRVFLSMPWRDVVSWNSVIIGYAHHGLAREAMCVFHD 401

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK-SMNDYNVNPNKEIYGCVVDLLGRAG 464
           M+ + + P  + F+ VL AC+  GLVDEGL Y    M +  + P +E Y C+V LL RAG
Sbjct: 402 MLLAEIVPSYVTFVGVLLACAQLGLVDEGLYYLNIMMKEMGIKPGREHYTCMVGLLCRAG 461

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           R+ EA + I S     D   W  LL +C+ ++   LG   A ++L LKPN +GTY++LSN
Sbjct: 462 RLDEAEQFILSNCIGTDVVAWKSLLSSCQVYKNYGLGHRVAEQILQLKPNDVGTYVLLSN 521

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           +YA   +W+   K RK+MR  G +KE G+SWI+V  +V  F + DK       +   L+ 
Sbjct: 522 MYAKANRWDGVVKVRKLMRERGVRKEPGVSWIQVGSEVHVFTSEDKNHKWINQITIKLKE 581

Query: 585 LIRHMNETAYEPDIDCLIHDLEGE 608
           LI  +    Y P+   ++HD+E E
Sbjct: 582 LIGQIKVIGYVPNCAVVLHDVEAE 605



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 141/300 (47%), Gaps = 9/300 (3%)

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVM--NSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
           G +  GK IHA +I+    ++  V+  N ++  Y +   L  A Q FD M  ++ ++ N 
Sbjct: 25  GELCTGKAIHAQMIR---AAHFDVIQHNHLIAFYGKCGRLGLARQMFDAMPSRNAVSGNL 81

Query: 286 IIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           +++GY  +G     +  + +K+  FS N +  ++ ++A A + +   G+Q H   V+ GL
Sbjct: 82  LMSGYASAGRHS--DALALLKAADFSLNEYVLSTALSAAAHVRSYGMGRQCHGYAVKSGL 139

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             +  + NA++ MY +C ++ D+ K+F  +S  D+  + SM+ G+   G    +I +   
Sbjct: 140 QEHPYVCNAVLHMYCQCAHVEDAVKVFENVSGFDIFAFNSMINGFLDLGEFDGSIRIVRS 199

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           MV    + D + ++AVL  C+    +  G +         +  N  +   +VD+ G+   
Sbjct: 200 MVGEVEQWDHVSYVAVLGHCASTKELLLGCQVHAQALKRRLEQNVYVGSALVDMYGKCDC 259

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN-LGKLAALRVLDLKPNMMGTYIILSN 524
            ++A+   + +P K   S    +    +  R  + L     L +  ++PN   TY +  N
Sbjct: 260 ARDAHSAFEVLPEKNVVSWTAVMTAYTQNERFEDALQLFLDLEIEGVRPNEF-TYAVALN 318


>gi|242092246|ref|XP_002436613.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
 gi|241914836|gb|EER87980.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
          Length = 683

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 168/508 (33%), Positives = 292/508 (57%), Gaps = 3/508 (0%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
           +L+  Y   G +E AR +F+ +P R+VVSWT M++G            +F +M ++ V P
Sbjct: 172 SLVDMYAKAGDLECARKVFERIPGRNVVSWTSMLSGCVQNGFAADGLLLFNKMRQDNVPP 231

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
           + +T+++V+ AC  +  L     +HG  IK+GL  + ++  +L+D+Y  C   +++A+ V
Sbjct: 232 SEYTIATVITACSALIGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCG-ELEDAQCV 290

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F+++ + + V WTT+I GY  +GN    L +F +     +  N  + +  + A A    +
Sbjct: 291 FDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKKFANIVPNSVTIATVLSASAQLRDL 350

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
           S G+ IH   +K G      V+N+++DMY +   +S+AN+ F  ++ KD++ WN++++GY
Sbjct: 351 SLGRSIHGIAVKLGLVEYTVVVNALVDMYAKCQAVSEANRIFGSISNKDVVAWNSMLSGY 410

Query: 291 -EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
            E +  ++ L +F +M  +  SP+  +    ++A   L  L  G+  H   V+     N+
Sbjct: 411 AENNMCNDALMLFKQMSLKGPSPDAISVVHALSASVCLGDLLIGKSFHGYAVKHAFLSNI 470

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
            ++ AL+++Y KCG++  ++++F EM+DR+ VTW +M+ GYG  G    +I+LF EM+K 
Sbjct: 471 YVSTALLNLYNKCGDLPSARRVFDEMNDRNSVTWCAMIGGYGMQGDSAGSIDLFGEMLKD 530

Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKE 468
           GV P+ + F ++L+ CSH G+V    +YF SM   +N+ P+ + Y C+VD+L RAG ++E
Sbjct: 531 GVHPNDVAFTSILSTCSHTGMVTAAKRYFDSMAQHFNITPSMKHYACMVDVLARAGNLEE 590

Query: 469 AYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA 528
           A E I +MP + D SVWG  L  C+ H     G+ A  R++ L P     Y+++SN+Y +
Sbjct: 591 ALEFIDNMPMQADTSVWGAFLHGCELHSRLQFGEEAIKRMMVLHPERPDLYVLISNLYTS 650

Query: 529 EGKWEEFAKFRKIMRGMGSKKEVGMSWI 556
            G WE+    R+ M+  G  K  G S I
Sbjct: 651 NGMWEKSQAIRRWMQEKGLVKLPGYSSI 678



 Score =  211 bits (538), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 141/449 (31%), Positives = 226/449 (50%), Gaps = 15/449 (3%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T L+  Y   G +  AR +FD  P  D  S+ VM+        H +A  +  +M R    
Sbjct: 68  TKLLSCYAALGDLASARMVFDGTPRPDAYSYGVMLWCLVQAERHAEAVALHQDMRRRRPC 127

Query: 110 PNA---FTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           P A   F LS  LKAC           +H  A+K G     +V NSL+D+YA     ++ 
Sbjct: 128 PEAQDDFVLSLALKACIRSADYGYGTRLHCDAVKVG-GADGFVMNSLVDMYAKAG-DLEC 185

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR VF  +  +N VSWT++++G   +G    GL +F +M  + V  + Y+ +  + AC++
Sbjct: 186 ARKVFERIPGRNVVSWTSMLSGCVQNGFAADGLLLFNKMRQDNVPPSEYTIATVITACSA 245

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  G+ +H +VIK G  SN  +  ++LDMY +   L DA   FDE++  DL+ W T+
Sbjct: 246 LIGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELEDAQCVFDELSYIDLVLWTTM 305

Query: 287 IAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I GY ++G+  + L +F   K     PN  T  ++++A A L  LS G+ +H   V+ GL
Sbjct: 306 IVGYTQNGNPLDALRLFLDKKFANIVPNSVTIATVLSASAQLRDLSLGRSIHGIAVKLGL 365

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
                + NAL+DMYAKC  +S++ +IF  +S++D+V W SM+ GY  +    +A+ LF +
Sbjct: 366 VEYTVVVNALVDMYAKCQAVSEANRIFGSISNKDVVAWNSMLSGYAENNMCNDALMLFKQ 425

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN----PNKEIYGCVVDLLG 461
           M   G  PD I  +  L+A    G +  G    KS + Y V      N  +   +++L  
Sbjct: 426 MSLKGPSPDAISVVHALSASVCLGDLLIG----KSFHGYAVKHAFLSNIYVSTALLNLYN 481

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLG 490
           + G +  A  +   M  + +   W  ++G
Sbjct: 482 KCGDLPSARRVFDEMNDR-NSVTWCAMIG 509



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 112/383 (29%), Positives = 199/383 (51%), Gaps = 9/383 (2%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S ++  L+  Y   G +E+A+ +FDE+   D+V WT MI GYT       A  +F++   
Sbjct: 268 SFISAALLDMYVKCGELEDAQCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKKF 327

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
             + PN+ T+++VL A   ++ LS    +HG+A+K GL     V N+L+D+YA  C ++ 
Sbjct: 328 ANIVPNSVTIATVLSASAQLRDLSLGRSIHGIAVKLGLVEYTVVVNALVDMYAK-CQAVS 386

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A  +F  +  K+ V+W ++++GYA +      L +FK+M L+G   +  S   A+ A  
Sbjct: 387 EANRIFGSISNKDVVAWNSMLSGYAENNMCNDALMLFKQMSLKGPSPDAISVVHALSASV 446

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
             G +  GK  H   +KH F SN+ V  ++L++Y +   L  A + FDEM +++ +TW  
Sbjct: 447 CLGDLLIGKSFHGYAVKHAFLSNIYVSTALLNLYNKCGDLPSARRVFDEMNDRNSVTWCA 506

Query: 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR- 343
           +I GY   G S+  +++F +M  +   PN   FTSI++ C+    ++  ++    + +  
Sbjct: 507 MIGGYGMQGDSAGSIDLFGEMLKDGVHPNDVAFTSILSTCSHTGMVTAAKRYFDSMAQHF 566

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGH---GKEA 399
            +  ++     ++D+ A+ GN+ ++ +    M    D   W + + G   H     G+EA
Sbjct: 567 NITPSMKHYACMVDVLARAGNLEEALEFIDNMPMQADTSVWGAFLHGCELHSRLQFGEEA 626

Query: 400 IELFDEMVKSGVRPDRIVFMAVL 422
           I+    MV    RPD  V ++ L
Sbjct: 627 IKRM--MVLHPERPDLYVLISNL 647



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 152/331 (45%), Gaps = 17/331 (5%)

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFG---SNLPVMNSILDMYCRFDCLSDANQYFDEMTE 277
           +R   S G +   +++HA ++ H  G    +L     +L  Y     L+ A   FD    
Sbjct: 33  LRLLPSCGTLPSLRVLHARLLTHTQGLLLGSLRARTKLLSCYAALGDLASARMVFDGTPR 92

Query: 278 KDLITWNTII-AGYEKSGSSECLNMFSKMKSERFSPNC---FTFTSIIAACATLAALSCG 333
            D  ++  ++    +    +E + +   M+  R  P     F  +  + AC   A    G
Sbjct: 93  PDAYSYGVMLWCLVQAERHAEAVALHQDMRRRRPCPEAQDDFVLSLALKACIRSADYGYG 152

Query: 334 QQVHAGIVR-RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA 392
            ++H   V+  G DG   + N+L+DMYAK G++  ++K+F  +  R++V+WTSM+ G   
Sbjct: 153 TRLHCDAVKVGGADG--FVMNSLVDMYAKAGDLECARKVFERIPGRNVVSWTSMLSGCVQ 210

Query: 393 HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEI 452
           +G   + + LF++M +  V P       V+TACS    + +G     S+    +  N  I
Sbjct: 211 NGFAADGLLLFNKMRQDNVPPSEYTIATVITACSALIGLHQGRWMHGSVIKQGLMSNSFI 270

Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRV-LDL 511
              ++D+  + G +++A  +   + +  D  +W  ++    ++  P    L ALR+ LD 
Sbjct: 271 SAALLDMYVKCGELEDAQCVFDELSYI-DLVLWTTMIVGYTQNGNP----LDALRLFLDK 325

Query: 512 K-PNMMGTYIILSNIYAAEGKWEEFAKFRKI 541
           K  N++   + ++ + +A  +  + +  R I
Sbjct: 326 KFANIVPNSVTIATVLSASAQLRDLSLGRSI 356


>gi|413952893|gb|AFW85542.1| hypothetical protein ZEAMMB73_270374 [Zea mays]
          Length = 716

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 174/540 (32%), Positives = 304/540 (56%), Gaps = 6/540 (1%)

Query: 22  IKQSLQSVKKS---SIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVV 78
           +K  ++S + S   S+  D   +      +  +L+  Y     +E AR +F+ +P+R+VV
Sbjct: 173 LKACIRSAEYSYGRSLHCDAIKVGGADGFVMNSLVDMYAKAEDLECARKVFERIPDRNVV 232

Query: 79  SWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMA 138
           SWT MI+G       +    +F +M ++ V P+ +T+++V+ AC  +  L     +HG  
Sbjct: 233 SWTSMISGCVQNGFASDGLLLFNKMRQDNVPPSEYTIATVITACSALFGLHQGRWMHGSV 292

Query: 139 IKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGG 198
           IK+GL  + ++  +L+D+Y  C   +D+AR VF+++ + + V WTT+I GY  +GN    
Sbjct: 293 IKQGLMSNSFISAALLDMYVKCG-ELDHARCVFDELSYIDLVLWTTMIVGYTQNGNPLDA 351

Query: 199 LGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDM 258
           L +F +     +  N  + +  + A A    +S GK IH   +K G      V N+++DM
Sbjct: 352 LRLFLDKRFANIAPNSVTTATVLSASAQLRDLSLGKSIHGLAVKLGLVEYNVVGNALVDM 411

Query: 259 YCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTF 317
           Y +   +S+A++ F  ++ KD++ WN++I+GY E +   + L +F +M  +  SP+  + 
Sbjct: 412 YAKCQAVSEADRIFGRISNKDVVAWNSMISGYAENNMGDDALMLFKQMSLQGSSPDAISV 471

Query: 318 TSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD 377
            + ++A   L  L  G+ +H   V+     N+ +  AL+++Y KCG++  ++++F EM+D
Sbjct: 472 VNALSASVCLGDLLIGKSIHGYAVKHAFVSNIYVDTALLNLYNKCGDLLSARRVFDEMND 531

Query: 378 RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY 437
           R+ VTW +M+ GYG  G    +I LF EM+K GV P+ I F ++L+ CSH+G+V  G +Y
Sbjct: 532 RNSVTWCAMIGGYGMQGDSAGSIHLFGEMLKDGVYPNDIAFTSILSTCSHSGMVTAGKRY 591

Query: 438 FKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR 496
           F SM   +N+ P+ + Y C+VD+L RAG +++A E I +MP + D SVWG  L  C+ H 
Sbjct: 592 FDSMAQHFNITPSMKHYACMVDVLARAGNLEDALEFIDNMPMQADTSVWGAFLHGCELHS 651

Query: 497 LPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWI 556
                + A  R++ L P     Y+++SN+Y + G W++    R+ M+  G  K  G S +
Sbjct: 652 RLQFAEEAIKRMMVLHPERPDLYVLISNLYTSNGMWDKSLAIRRWMQEKGLVKLPGCSSV 711



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 142/449 (31%), Positives = 226/449 (50%), Gaps = 15/449 (3%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           T L+  Y   G +  AR +FD  P  D  S+  M+        H  A  +  +M R    
Sbjct: 101 TKLLSCYAALGDLASARMVFDGTPRPDAYSYGAMLWCLVQTERHADAVALHHDMRRRRPC 160

Query: 110 PNA---FTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           P A   F LS  LKAC      S    +H  AIK G     +V NSL+D+YA     ++ 
Sbjct: 161 PEAQDDFVLSLALKACIRSAEYSYGRSLHCDAIKVG-GADGFVMNSLVDMYAK-AEDLEC 218

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR VF  +  +N VSWT++I+G   +G    GL +F +M  + V  + Y+ +  + AC++
Sbjct: 219 ARKVFERIPDRNVVSWTSMISGCVQNGFASDGLLLFNKMRQDNVPPSEYTIATVITACSA 278

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  G+ +H +VIK G  SN  +  ++LDMY +   L  A   FDE++  DL+ W T+
Sbjct: 279 LFGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELDHARCVFDELSYIDLVLWTTM 338

Query: 287 IAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I GY ++G+  + L +F   +    +PN  T  ++++A A L  LS G+ +H   V+ GL
Sbjct: 339 IVGYTQNGNPLDALRLFLDKRFANIAPNSVTTATVLSASAQLRDLSLGKSIHGLAVKLGL 398

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
                + NAL+DMYAKC  +S++ +IF  +S++D+V W SM+ GY  +  G +A+ LF +
Sbjct: 399 VEYNVVGNALVDMYAKCQAVSEADRIFGRISNKDVVAWNSMISGYAENNMGDDALMLFKQ 458

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN----PNKEIYGCVVDLLG 461
           M   G  PD I  +  L+A    G     L   KS++ Y V      N  +   +++L  
Sbjct: 459 MSLQGSSPDAISVVNALSASVCLG----DLLIGKSIHGYAVKHAFVSNIYVDTALLNLYN 514

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLG 490
           + G +  A  +   M  + +   W  ++G
Sbjct: 515 KCGDLLSARRVFDEMNDR-NSVTWCAMIG 542



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 190/364 (52%), Gaps = 17/364 (4%)

Query: 143 LEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVF 202
           L GS+     L+  YA     + +AR+VF+     +  S+  ++     +      + + 
Sbjct: 93  LLGSLRARTKLLSCYAALG-DLASARMVFDGTPRPDAYSYGAMLWCLVQTERHADAVALH 151

Query: 203 KEMLLEGV---EMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMY 259
            +M          + +  S+A++AC  +   S+G+ +H   IK G G++  VMNS++DMY
Sbjct: 152 HDMRRRRPCPEAQDDFVLSLALKACIRSAEYSYGRSLHCDAIKVG-GADGFVMNSLVDMY 210

Query: 260 CRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFT 318
            + + L  A + F+ + ++++++W ++I+G  ++G +S+ L +F+KM+ +   P+ +T  
Sbjct: 211 AKAEDLECARKVFERIPDRNVVSWTSMISGCVQNGFASDGLLLFNKMRQDNVPPSEYTIA 270

Query: 319 SIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR 378
           ++I AC+ L  L  G+ +H  ++++GL  N  ++ AL+DMY KCG +  ++ +F E+S  
Sbjct: 271 TVITACSALFGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELDHARCVFDELSYI 330

Query: 379 DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH-----AGLVDE 433
           DLV WT+M++GY  +G+  +A+ LF +   + + P+ +    VL+A +       G    
Sbjct: 331 DLVLWTTMIVGYTQNGNPLDALRLFLDKRFANIAPNSVTTATVLSASAQLRDLSLGKSIH 390

Query: 434 GLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACK 493
           GL     + +YNV  N      +VD+  +   V EA  +   +  K D   W  ++    
Sbjct: 391 GLAVKLGLVEYNVVGNA-----LVDMYAKCQAVSEADRIFGRISNK-DVVAWNSMISGYA 444

Query: 494 EHRL 497
           E+ +
Sbjct: 445 ENNM 448


>gi|125527494|gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indica Group]
          Length = 608

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 194/608 (31%), Positives = 318/608 (52%), Gaps = 46/608 (7%)

Query: 38  PPLIPKG--PSILATNLIKSYFDEGLIEEA------RTLFDEMPERDVVSWTVMIAGYTS 89
           PP +P    P  LA  L+K+     L+ +A      R LFD +P         +I+  + 
Sbjct: 4   PPSLPYRHLPQHLA-GLLKTRPLHDLLSDASTSRAARHLFDAVPRPTPALCGTLISALSR 62

Query: 90  FNCHNQAWTVFVEMVR--NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSI 147
              H +    F  + R  ++V P    L  V+K+C  + +      VH  AI  GL G I
Sbjct: 63  LCSHQELLDAFSSLHRRGSDVPPGCVPL--VVKSCAILAASRQGKQVHCHAIVRGLLGDI 120

Query: 148 YVENSLMDVYA-----------------------TCCIS-------MDNARLVFNDMKWK 177
           +V+ +L+D YA                        C I+       +  AR +F+ M  +
Sbjct: 121 FVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLFDGMVRR 180

Query: 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIH 237
              SW ++I  YAH G     L +F+ ML EG   N  + +     CA TG +  GK   
Sbjct: 181 TSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETGKWAR 240

Query: 238 AAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS- 296
           + + +     N+ V  ++++MY +   + +A + FD M ++D++ W+T+IAGY ++G   
Sbjct: 241 SLIAEQDL-QNMIVHTALMEMYVKCQAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPH 299

Query: 297 ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALI 356
           E L +F +MK+    PN  T   +++ACA L +   G Q+ + +  + L     L +ALI
Sbjct: 300 ESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALI 359

Query: 357 DMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI 416
           DMY KCG++  ++ +F+ M  + ++TW SMM G   +G  ++AI L+ EM +  V+P+ I
Sbjct: 360 DMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEI 419

Query: 417 VFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKS 475
            F+A+LTAC+HAGLVD+G+ +FK M   ++V+P  E   C+VDLL ++GR++EAY+ I  
Sbjct: 420 TFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLLCKSGRLREAYKFICD 479

Query: 476 MPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEF 535
           M  +P+  +W  LL AC+ H    L KLAA ++L L+P+    Y++LSNIYA  G W + 
Sbjct: 480 MEVEPNAVIWSTLLSACRAHADVELAKLAASKLLVLEPDNSSIYVLLSNIYADAGLWGDV 539

Query: 536 AKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYE 595
            + R +MR    +K    SWIE+  +V  F+  D     +  ++ V++ +  H+++   +
Sbjct: 540 REIRDLMRSKNVQKLSAYSWIELDGEVHKFLVQDTYHPKSAEIFNVVDGMGLHLDDVDSD 599

Query: 596 PDIDCLIH 603
           PD+  L H
Sbjct: 600 PDLFVLEH 607


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 184/557 (33%), Positives = 314/557 (56%), Gaps = 15/557 (2%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
            LI +Y  E  +E A  LFDEMP+ D VS+  +IA Y        A+ +F+EM    ++ 
Sbjct: 79  TLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDM 138

Query: 111 NAFTLSSVLKACKGMKSLSNAALV---HGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + FTLS ++ AC G+    N  L+   H +++  GL+  + V N+L+  Y+     +  A
Sbjct: 139 DGFTLSGIITAC-GI----NVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGF-LKEA 192

Query: 168 RLVFNDMKW-KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           R +F+ +   +++VSW +++  Y     G   L ++ EM + G+ ++ ++ +  + A  +
Sbjct: 193 RRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTN 252

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFD-CLSDANQYFDEMTEKDLITWNT 285
              +  G   HA +IK G+  N  V + ++D+Y +   C+ D  + FDE++  DL+ WNT
Sbjct: 253 VQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNT 312

Query: 286 IIAGYE--KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           +I+GY   +  S E L  F +++     P+  +   +I+AC+ +++ S G+QVH   ++ 
Sbjct: 313 MISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKL 372

Query: 344 GLDGN-LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            +  N +++ NALI MY+KCGN+ D++ +F  M + + V++ SM+ GY  HG G +++ L
Sbjct: 373 DIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHL 432

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLG 461
           F  M++    P  I F++VL AC+H G V++G  YF  M   + + P    + C++DLLG
Sbjct: 433 FQRMLEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLG 492

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           RAG++ EA  LI+++PF P    W  LLGAC+ H    L   AA R+L L P     Y++
Sbjct: 493 RAGKLSEAERLIETIPFDPGFFXWSALLGACRIHGNVELAIKAANRLLQLDPLNAAPYVM 552

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGV 581
           L+NIY+  G+ ++ A  RK+MR  G KK+ G SWIEV  ++  F+A D      + +   
Sbjct: 553 LANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHIFVAEDTFHPMIKKIQEY 612

Query: 582 LEMLIRHMNETAYEPDI 598
           LE ++R + +  Y P++
Sbjct: 613 LEEMMRKIKKVGYTPEV 629



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 112/478 (23%), Positives = 215/478 (44%), Gaps = 44/478 (9%)

Query: 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFND 173
           +    LK C   + L     +H + IK  +  S Y+ N  + +Y+ C   +  AR VF+ 
Sbjct: 10  SFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKC-RRLSAARRVFDH 68

Query: 174 MKWKNDVSWTTLIT-------------------------------GYAHSGNGYGGLGVF 202
               N  S+ TLI+                                YA  G+      +F
Sbjct: 69  THDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLF 128

Query: 203 KEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRF 262
            EM    ++M+ ++ S  + AC     V   + +HA  +  G  S + V N+++  Y + 
Sbjct: 129 LEMREAFLDMDGFTLSGIITACGIN--VGLIRQLHALSVVTGLDSYVSVGNALITSYSKN 186

Query: 263 DCLSDANQYFDEMTE-KDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSI 320
             L +A + F  ++E +D ++WN+++  Y +    S+ L ++ +M       + FT  S+
Sbjct: 187 GFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASV 246

Query: 321 IAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGN-ISDSQKIFSEMSDRD 379
           + A   +  L  G Q HA +++ G   N  + + LID+Y+KCG  + D +K+F E+S+ D
Sbjct: 247 LTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPD 306

Query: 380 LVTWTSMMIGYGAHGH-GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYF 438
           LV W +M+ GY  +     EA+E F ++   G RPD    + V++ACS+     +G +  
Sbjct: 307 LVLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVH 366

Query: 439 KSMNDYNVNPNK-EIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
                 ++  N+  +   ++ +  + G +++A  L  +MP + +   +  ++    +H +
Sbjct: 367 GLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMP-EHNTVSYNSMIAGYAQHGM 425

Query: 498 --PNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMR-GMGSKKEVG 552
              +L     +  +D  P  + T+I +    A  G+ E+   +  +M+   G + E G
Sbjct: 426 GFQSLHLFQRMLEMDFTPTNI-TFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAG 482



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 41/82 (50%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           IP     +   LI  Y   G + +A+TLFD MPE + VS+  MIAGY       Q+  +F
Sbjct: 374 IPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLF 433

Query: 101 VEMVRNEVNPNAFTLSSVLKAC 122
             M+  +  P   T  SVL AC
Sbjct: 434 QRMLEMDFTPTNITFISVLAAC 455



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/134 (21%), Positives = 64/134 (47%), Gaps = 4/134 (2%)

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
           FS    +F   +  C     L  G+ +HA  ++  +  +  L+N  + +Y+KC  +S ++
Sbjct: 4   FSSLLHSFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAAR 63

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
           ++F    D ++ ++ +++  Y    + + A +LFDEM +    PD + +  ++ A +  G
Sbjct: 64  RVFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQ----PDSVSYNTLIAAYARRG 119

Query: 430 LVDEGLKYFKSMND 443
                 + F  M +
Sbjct: 120 DTQPAFQLFLEMRE 133


>gi|242077664|ref|XP_002448768.1| hypothetical protein SORBIDRAFT_06g032835 [Sorghum bicolor]
 gi|241939951|gb|EES13096.1| hypothetical protein SORBIDRAFT_06g032835 [Sorghum bicolor]
          Length = 598

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 192/578 (33%), Positives = 316/578 (54%), Gaps = 22/578 (3%)

Query: 5   RLLSYAATFHCHKIPPIIKQSLQSV-KKSSIQSDPPLIPKG------PSILA------TN 51
           R  + AA+ H  +  P+      ++ ++S   +DP L          P +LA       +
Sbjct: 23  RTFAAAASSHHQQQQPLPSYHYAALLQRSGATADPRLAAALHAALLKPGVLACHVFLHNH 82

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+ +YF   L      + DEMP R+ VSW+  IAG         A  +F+ M      PN
Sbjct: 83  LLIAYFKCRLHRRGLRVLDEMPHRNAVSWSAAIAGLAQGGRPRDALALFIRMRLAGCPPN 142

Query: 112 AFTLSSVLKACKGMKSLSNAAL-VHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
            F L+S L A     + +  A  ++ ++++ G + S+++ N+ +   A      D  RL 
Sbjct: 143 EFALASALNASSFAPAGTGCARQLYALSVRLGFDSSVFLTNAFLAAMARHGQLEDAVRL- 201

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           FN    ++ VSW TL+ G+A   +  G + +++ M+ E V  + +SFS  +   A++  +
Sbjct: 202 FNGSSVRDIVSWNTLLAGFARHWSVQGWI-LWRRMVREAVRADGFSFSTVLSGLAASTSL 260

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
           + G  +HA ++K GFG ++ V NS+++MY +  CL+D    F E+  KD+++W  + AG 
Sbjct: 261 ASGLQVHAQLVKSGFGDDVYVGNSLVEMYMKSKCLADGTMAFAEIRCKDVVSWTGMAAGC 320

Query: 291 EKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
              G  S+ + + S+M  +   PN +TF +   ACA+L  L  G++VH  +++ G D ++
Sbjct: 321 LHCGEPSKAIGILSQMMLDGVMPNSYTFATSANACASLTDLDEGRKVHGYVIKLGDDSDI 380

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
            + NALIDMYAKCG+++ + K+F  M  R +++WT+M++G+  +G  +EA+E+FD+M+  
Sbjct: 381 GVNNALIDMYAKCGSVACAHKVFQSMQQRPVISWTAMIMGFAHNGRAQEAVEVFDDMLLK 440

Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKE 468
           GV P+R+  + +L ACS  G VDEG  YF +M D + + P ++ Y C+VDLLG+AG ++E
Sbjct: 441 GVAPNRVTMICILYACSQGGFVDEGWIYFNAMEDKFGIQPGEDHYACMVDLLGKAGHIEE 500

Query: 469 AYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA 528
           A ELI  MPF P   VW  LLGAC  H    +G+ AA   L L+ +   TY++L N  A 
Sbjct: 501 AEELISRMPFPPGVLVWQALLGACHRHGNEAVGRRAAEHALALENDDPSTYMLLCNTLAG 560

Query: 529 EGKWEEFAKFRKIMRGMGSKKEVGMSWIEV---RDKVC 563
           +  W+   + R +M G    K  G SW +    R + C
Sbjct: 561 QHDWDGARRARGLM-GAEILKLPGSSWFQSMSDRKRAC 597


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 179/504 (35%), Positives = 292/504 (57%), Gaps = 11/504 (2%)

Query: 115 LSSVLKACKGMKSL-----SNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS--MDNA 167
           LS +L+ C  +  L     S    +H  +I+ G+       N  + ++A   +S  M  A
Sbjct: 30  LSFILRKCISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHL-IFALVSLSAPMSFA 88

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEM-LLEGVEMNPYSFSIAVRACAS 226
             +FN ++  N  +W T+I G+A S N    + +F +M     +  + ++F    +A A 
Sbjct: 89  AQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAK 148

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              VS G+ IH+ V+++GF S   V NS++ MY     L  A Q F+ M+ +D + WN++
Sbjct: 149 LMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSV 208

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I G+  +G  +E L ++ +M SE   P+ FT  S+++AC  L AL+ G++VH  +V+ GL
Sbjct: 209 INGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGL 268

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             N   +NAL+D+Y+KCGN  D+QK+F EM +R +V+WTS+++G   +G G EA++LF E
Sbjct: 269 VQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGE 328

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAG 464
           + + G++P  I F+ VL ACSH G++DEG  YF+ M  +Y + P  E +GC+VDLL RAG
Sbjct: 329 LERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAG 388

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           +V +AY+ I++MP  P+  +W  LLGAC  H    LG++A   +  L+    G +++LSN
Sbjct: 389 KVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSN 448

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           +YA+E +W +    RKIM   G KK  G S +E++++V  FI  D+    ++  Y +L  
Sbjct: 449 LYASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAK 508

Query: 585 LIRHMNETAYEPDIDCLIHDLEGE 608
           + + +    Y P    ++ D+E E
Sbjct: 509 ITQLLKIEGYVPRTVNVLADIEEE 532



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 167/335 (49%), Gaps = 5/335 (1%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM-VRNEVNPNAFTLSSVLKACK 123
           A  +F+++   ++ +W  MI G+      + A  +F +M   + + P+  T   + KA  
Sbjct: 88  AAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVA 147

Query: 124 GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWT 183
            +  +S    +H + ++ G +   +V+NSL+ +Y+    S+ +A  VF  M +++ V+W 
Sbjct: 148 KLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLG-SLXSAYQVFEIMSYRDRVAWN 206

Query: 184 TLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH 243
           ++I G+A +G     L +++EM  EGVE + ++    + AC   G ++ G+ +H  ++K 
Sbjct: 207 SVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKV 266

Query: 244 GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMF 302
           G   N    N++LD+Y +     DA + FDEM E+ +++W ++I G   +G  +E L +F
Sbjct: 267 GLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLF 326

Query: 303 SKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-GLDGNLALANALIDMYAK 361
            +++ +   P+  TF  ++ AC+    L  G      +    G+   +     ++D+  +
Sbjct: 327 GELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCR 386

Query: 362 CGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGH 395
            G + D+      M    + V W +++     HGH
Sbjct: 387 AGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGH 421



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 127/253 (50%), Gaps = 3/253 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            +  +L+  Y   G +  A  +F+ M  RD V+W  +I G+      N+A T++ EM   
Sbjct: 172 FVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSE 231

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V P+ FT+ S+L AC  + +L+    VH   +K GL  + +  N+L+D+Y+ C  +  +
Sbjct: 232 GVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCG-NFRD 290

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A+ VF++M+ ++ VSWT+LI G A +G G   L +F E+  +G++ +  +F   + AC+ 
Sbjct: 291 AQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSH 350

Query: 227 TGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLITWN 284
            G +  G         ++G    +     ++D+ CR   + DA  Y   M    + + W 
Sbjct: 351 CGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWR 410

Query: 285 TIIAGYEKSGSSE 297
           T++      G  E
Sbjct: 411 TLLGACTIHGHLE 423


>gi|413932453|gb|AFW67004.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 913

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 183/514 (35%), Positives = 291/514 (56%), Gaps = 12/514 (2%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI+ Y   G +  A  +F  M   DVV +T +++         +A  V  +M R  + PN
Sbjct: 177 LIELYSRCGSLRAAEEVFRRMEAPDVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPN 236

Query: 112 AFTLSSVLKAC-KGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
             T++S+L  C +G+        +HG  +K     S+Y   +L+D Y+        A+ V
Sbjct: 237 EHTMTSMLAECPRGI-----GEQIHGYMLKVMGSQSVYASTALIDFYSRYG-DFGTAKTV 290

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F +++ KN VSW +++      G     L VF EM+ EGV+ N ++FSIA+ AC S   V
Sbjct: 291 FENLESKNVVSWCSMMQLCIRDGRLDDALRVFSEMISEGVQPNEFAFSIALSACGS---V 347

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
             G+ IH + IK    +++ V N++L MY R   +S+      ++   DL++W   I+  
Sbjct: 348 CLGRQIHCSAIKRDLMTDIRVSNALLSMYGRSGFVSELEAVLGKIENPDLVSWTAAISAN 407

Query: 291 EKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
            ++G SE  + +  +M SE F+PN + F+S +++CA LA L  G+Q+H   ++ G D  +
Sbjct: 408 FQNGFSEKAVALLLQMHSEGFTPNDYAFSSGLSSCADLALLHQGRQLHCLALKLGCDFKV 467

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
              NALI+MY+KCG I  ++  F  M   D+++W S++ G   HG    A+E F EM  S
Sbjct: 468 CTGNALINMYSKCGRIGSARLAFDVMDTHDVMSWNSLIHGLAQHGDANLALETFSEMCSS 527

Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKE 468
             RPD   F++VL  C+HAGLV EG  +F+ M D Y + P    Y C++D+LGR GR  E
Sbjct: 528 DWRPDDSTFLSVLVGCNHAGLVKEGETFFRQMTDRYGLTPTPSHYACMIDMLGRNGRFAE 587

Query: 469 AYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA 528
           A  +I++MPF+PD  +W  LL +CK HR  ++GKLAA ++++L      +Y+++SN+YA 
Sbjct: 588 ALRMIENMPFEPDVLIWKTLLASCKLHRNLDIGKLAADKLMELSERDSASYVLMSNLYAM 647

Query: 529 EGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKV 562
             +W +  + R+ M  +G KK+ G SWIEV+++V
Sbjct: 648 HEEWRDAERVRRRMDEIGVKKDAGWSWIEVKNEV 681



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 114/465 (24%), Positives = 227/465 (48%), Gaps = 18/465 (3%)

Query: 42  PKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFV 101
           P    +L    +      G + +A  LFD MP ++VV+WT  I+G T       A T+F 
Sbjct: 66  PPPDVVLDCKRLDGLMKSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFA 125

Query: 102 EMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
           +M+ + V PN F  ++ L AC    +L     VH +A++ G     ++ + L+++Y+ C 
Sbjct: 126 DMLESGVAPNDFACNAALAACAAAGALGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCG 185

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
            S+  A  VF  M+  + V +T+L++    +G     + V  +M  +G++ N ++ +  +
Sbjct: 186 -SLRAAEEVFRRMEAPDVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSML 244

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
             C        G+ IH  ++K     ++    +++D Y R+     A   F+ +  K+++
Sbjct: 245 AECPR----GIGEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFGTAKTVFENLESKNVV 300

Query: 282 TWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           +W +++    + G   + L +FS+M SE   PN F F+  ++AC ++     G+Q+H   
Sbjct: 301 SWCSMMQLCIRDGRLDDALRVFSEMISEGVQPNEFAFSIALSACGSVC---LGRQIHCSA 357

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           ++R L  ++ ++NAL+ MY + G +S+ + +  ++ + DLV+WT+ +     +G  ++A+
Sbjct: 358 IKRDLMTDIRVSNALLSMYGRSGFVSELEAVLGKIENPDLVSWTAAISANFQNGFSEKAV 417

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY----FKSMNDYNVNPNKEIYGCV 456
            L  +M   G  P+   F + L++C+   L+ +G +      K   D+ V     +   +
Sbjct: 418 ALLLQMHSEGFTPNDYAFSSGLSSCADLALLHQGRQLHCLALKLGCDFKVCTGNALIN-M 476

Query: 457 VDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLG 501
               GR G  + A++++ +     D   W  L+    +H   NL 
Sbjct: 477 YSKCGRIGSARLAFDVMDTH----DVMSWNSLIHGLAQHGDANLA 517



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 132/269 (49%), Gaps = 22/269 (8%)

Query: 265 LSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECL-NMFSKMKSERFSPNCFTFTSIIAA 323
           L DA   FD M  K+++ W T I+G  ++G  E    MF+ M     +PN F   + +AA
Sbjct: 86  LGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADMLESGVAPNDFACNAALAA 145

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTW 383
           CA   AL  G+QVH+  VR G   +  + + LI++Y++CG++  ++++F  M   D+V +
Sbjct: 146 CAAAGALGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSLRAAEEVFRRMEAPDVVGY 205

Query: 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND 443
           TS++     +G    A+++  +M + G++P+     ++L  C   G+ ++   Y      
Sbjct: 206 TSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLAECPR-GIGEQIHGYM----- 259

Query: 444 YNVNPNKEIYG--CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGAC-KEHRLPNL 500
             V  ++ +Y    ++D   R G    A  + +++  K   S W  ++  C ++ RL + 
Sbjct: 260 LKVMGSQSVYASTALIDFYSRYGDFGTAKTVFENLESKNVVS-WCSMMQLCIRDGRLDD- 317

Query: 501 GKLAALRVLD------LKPNMMGTYIILS 523
               ALRV        ++PN     I LS
Sbjct: 318 ----ALRVFSEMISEGVQPNEFAFSIALS 342


>gi|409032180|gb|AFV08644.1| EMP5 [Zea mays]
 gi|409032182|gb|AFV08645.1| EMP5 [Zea mays]
 gi|414878626|tpg|DAA55757.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 776

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 184/559 (32%), Positives = 311/559 (55%), Gaps = 17/559 (3%)

Query: 56  YFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTL 115
           Y   G + EAR +FD   ERD VSW  +++GY       +   VF  M R+ +  N+F L
Sbjct: 147 YARCGEMGEARRVFDAAEERDDVSWNALLSGYVRAGAREETLEVFSLMCRHGLGWNSFAL 206

Query: 116 SSVLKACKGMKSLSN---------AALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            S++K C    S +          A  VHG  +K GL+  +++ ++++D+YA    ++ N
Sbjct: 207 GSIIKCCASSSSYAAAGDVGGGRIAEAVHGCVVKAGLDADLFLASAMIDMYAKRG-ALTN 265

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAH---SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           A  +F  +   N +    +I G+     +      LG++ E+   G++ + +SFS  +RA
Sbjct: 266 AVALFKSVPDPNVIVLNAMIAGFCREEAADVAREALGLYSELQSRGMQPSEFSFSSILRA 325

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C   G   FGK IH  V+KH F  ++ + ++++D+Y    C+ D  + F  + ++D++ W
Sbjct: 326 CNLAGEFGFGKQIHGQVLKHSFQGDVYIGSALIDLYSGSGCMEDGYRCFRSLPKQDVVIW 385

Query: 284 NTIIAG-YEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
            ++I+G  +     E L +F +       P+ F  +S++ ACA+LA    G+Q+    V+
Sbjct: 386 TSVISGCVQNELFEEALRLFQESVRCGLRPDVFAMSSVMNACASLAVARTGEQIQCLAVK 445

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            G +   A+ N+ I M A+ G++  + + F EM  RD+V+W++++  +  HG  ++A+ +
Sbjct: 446 SGFNRFTAMGNSFIHMCARSGDVDAATRRFQEMESRDVVSWSAVISSHAHHGCARDALCV 505

Query: 403 FDEMVKSGVRP-DRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLL 460
           F+EM+ + V P + I F+++LTACSH GLVDEGL+Y+  MND Y ++P  +   CVVDLL
Sbjct: 506 FNEMLDAKVAPPNEITFLSILTACSHGGLVDEGLRYYGIMNDEYGLSPTIKHCTCVVDLL 565

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520
           GRAGR+ +A   I+   F  D  VW  LL +C+ H     G+L A +++DL+P    +Y+
Sbjct: 566 GRAGRLADAEAFIRDSAFHDDAVVWRSLLASCRIHGDMERGQLVADKIMDLEPTSSASYV 625

Query: 521 ILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVY- 579
           IL N+Y   G+    +K R +M+  G KKE G+SWIE+   V  F+A DK    ++ +Y 
Sbjct: 626 ILYNMYLDAGELSSASKTRDLMKERGVKKEPGLSWIELSSGVHSFVAGDKSHPESKAIYR 685

Query: 580 GVLEMLIRHMNETAYEPDI 598
            V EM+ +    ++ E D+
Sbjct: 686 KVAEMVSKVAGISSREQDL 704



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 130/475 (27%), Positives = 229/475 (48%), Gaps = 29/475 (6%)

Query: 42  PKGPSILATNLIKSYFDEGL---IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWT 98
           P     L   L+ SY   G+   +  AR L DEMP R+ VS+ ++I  Y+       +  
Sbjct: 30  PNASLFLRNCLLASYCRLGVGAPLHAAR-LLDEMPRRNAVSYNLVIVAYSRAGLPALSLA 88

Query: 99  VFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA 158
            F          + FT ++ L AC     +     VH M +  GL   +++ NS+  +YA
Sbjct: 89  TFARARAWARVVDRFTYAAALAACSRALDVRTGKAVHAMVVLGGLGNGLFLSNSVASMYA 148

Query: 159 TCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFS 218
            C   M  AR VF+  + ++DVSW  L++GY  +G     L VF  M   G+  N ++  
Sbjct: 149 RCG-EMGEARRVFDAAEERDDVSWNALLSGYVRAGAREETLEVFSLMCRHGLGWNSFALG 207

Query: 219 IAVRAC------ASTGWVSFGKL---IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDAN 269
             ++ C      A+ G V  G++   +H  V+K G  ++L + ++++DMY +   L++A 
Sbjct: 208 SIIKCCASSSSYAAAGDVGGGRIAEAVHGCVVKAGLDADLFLASAMIDMYAKRGALTNAV 267

Query: 270 QYFDEMTEKDLITWNTIIAGYEKSGSS----ECLNMFSKMKSERFSPNCFTFTSIIAACA 325
             F  + + ++I  N +IAG+ +  ++    E L ++S+++S    P+ F+F+SI+ AC 
Sbjct: 268 ALFKSVPDPNVIVLNAMIAGFCREEAADVAREALGLYSELQSRGMQPSEFSFSSILRACN 327

Query: 326 TLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTS 385
                  G+Q+H  +++    G++ + +ALID+Y+  G + D  + F  +  +D+V WTS
Sbjct: 328 LAGEFGFGKQIHGQVLKHSFQGDVYIGSALIDLYSGSGCMEDGYRCFRSLPKQDVVIWTS 387

Query: 386 MMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG-----LKYFKS 440
           ++ G   +   +EA+ LF E V+ G+RPD     +V+ AC+   +   G     L     
Sbjct: 388 VISGCVQNELFEEALRLFQESVRCGLRPDVFAMSSVMNACASLAVARTGEQIQCLAVKSG 447

Query: 441 MNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            N +    N  I+ C      R+G V  A    + M  + D   W  ++ +   H
Sbjct: 448 FNRFTAMGNSFIHMC-----ARSGDVDAATRRFQEMESR-DVVSWSAVISSHAHH 496



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/395 (27%), Positives = 201/395 (50%), Gaps = 20/395 (5%)

Query: 118 VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS--MDNARLVFNDMK 175
           +L++C    +L + A VH    +     S+++ N L+  Y    +   +  ARL+ ++M 
Sbjct: 8   LLRSCA---ALPHVAAVHAHLARAHPNASLFLRNCLLASYCRLGVGAPLHAARLL-DEMP 63

Query: 176 WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKL 235
            +N VS+  +I  Y+ +G     L  F         ++ ++++ A+ AC+    V  GK 
Sbjct: 64  RRNAVSYNLVIVAYSRAGLPALSLATFARARAWARVVDRFTYAAALAACSRALDVRTGKA 123

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS 295
           +HA V+  G G+ L + NS+  MY R   + +A + FD   E+D ++WN +++GY ++G+
Sbjct: 124 VHAMVVLGGLGNGLFLSNSVASMYARCGEMGEARRVFDAAEERDDVSWNALLSGYVRAGA 183

Query: 296 -SECLNMFSKMKSERFSPNCFTFTSIIAACAT---------LAALSCGQQVHAGIVRRGL 345
             E L +FS M       N F   SII  CA+         +      + VH  +V+ GL
Sbjct: 184 REETLEVFSLMCRHGLGWNSFALGSIIKCCASSSSYAAAGDVGGGRIAEAVHGCVVKAGL 243

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY---GAHGHGKEAIEL 402
           D +L LA+A+IDMYAK G ++++  +F  + D +++   +M+ G+    A    +EA+ L
Sbjct: 244 DADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVLNAMIAGFCREEAADVAREALGL 303

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
           + E+   G++P    F ++L AC+ AG    G +    +  ++   +  I   ++DL   
Sbjct: 304 YSELQSRGMQPSEFSFSSILRACNLAGEFGFGKQIHGQVLKHSFQGDVYIGSALIDLYSG 363

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
           +G +++ Y   +S+P K D  +W  ++  C ++ L
Sbjct: 364 SGCMEDGYRCFRSLP-KQDVVIWTSVISGCVQNEL 397



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 121/259 (46%), Gaps = 6/259 (2%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           +G   + + LI  Y   G +E+    F  +P++DVV WT +I+G        +A  +F E
Sbjct: 348 QGDVYIGSALIDLYSGSGCMEDGYRCFRSLPKQDVVIWTSVISGCVQNELFEEALRLFQE 407

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
            VR  + P+ F +SSV+ AC  +        +  +A+K G      + NS + + A    
Sbjct: 408 SVRCGLRPDVFAMSSVMNACASLAVARTGEQIQCLAVKSGFNRFTAMGNSFIHMCARSG- 466

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVE-MNPYSFSIAV 221
            +D A   F +M+ ++ VSW+ +I+ +AH G     L VF EML   V   N  +F   +
Sbjct: 467 DVDAATRRFQEMESRDVVSWSAVISSHAHHGCARDALCVFNEMLDAKVAPPNEITFLSIL 526

Query: 222 RACASTGWVSFGKLIHAAVI--KHGFGSNLPVMNSILDMYCRFDCLSDANQYF-DEMTEK 278
            AC+  G V  G L +  ++  ++G    +     ++D+  R   L+DA  +  D     
Sbjct: 527 TACSHGGLVDEG-LRYYGIMNDEYGLSPTIKHCTCVVDLLGRAGRLADAEAFIRDSAFHD 585

Query: 279 DLITWNTIIAGYEKSGSSE 297
           D + W +++A     G  E
Sbjct: 586 DAVVWRSLLASCRIHGDME 604


>gi|449450476|ref|XP_004142988.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 692

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 182/550 (33%), Positives = 297/550 (54%), Gaps = 19/550 (3%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + ++LI  Y   G + +AR +FD +PER+ VSW  +I+GY       +AW +F+ M R 
Sbjct: 149 FVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFLLMRRE 208

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           E   + F  +SVL A      +     +H +A+K GL     V N+L+ +Y  C   +D+
Sbjct: 209 EGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCG-CLDD 267

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A   F     K+D++W+ +ITGYA +G+ +  L +F  M L G + + ++F   + AC+ 
Sbjct: 268 AFKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSD 327

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
            G +  GK IH   +K G+   +        +  +   L DA + FD + E D++ W + 
Sbjct: 328 IGALEEGKQIHGYSLKAGYECQIYFRKGFDYLKAKCGSLVDARKGFDYLKEPDIVLWTS- 386

Query: 287 IAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
                            +M+ ER  P+  T  S++ AC++LAAL  G+Q+HA  ++ G  
Sbjct: 387 ----------------CRMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFS 430

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
             + + +AL  MYAKCG++ D   +F  M  RD++TW +M+ G   +G G +A+ELF+E+
Sbjct: 431 LEVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELFEEL 490

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGR 465
                +PD + F+ VL+ACSH GLV+ G  YF+ M +++ + P  E Y C+VD+L RAG+
Sbjct: 491 RHGTTKPDYVTFVNVLSACSHMGLVERGKVYFRMMLDEFGIIPRVEHYACMVDILSRAGK 550

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           + E  E I+S        +W  LLGAC+ +R   LG  A  ++++L       YI+LS+I
Sbjct: 551 LHETKEFIESATIDHGMCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYILLSSI 610

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           Y A G+ ++  + R++M+  G  KE G SWIE++ +V  F+  D++      +   L  L
Sbjct: 611 YTALGRSDDVERVRRLMKLRGVNKEPGCSWIELKSQVHVFVVGDQIHPQIVKICSELRRL 670

Query: 586 IRHMNETAYE 595
             HM +  YE
Sbjct: 671 RDHMKDECYE 680



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 114/346 (32%), Positives = 187/346 (54%), Gaps = 10/346 (2%)

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P   +   +L  C   K L     +H   ++ G   S+Y+ NSL+++YA C  S+  A+L
Sbjct: 8   PQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCG-SIVKAKL 66

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGN-GYGG-LGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           VF  +  K+ VSW  LI GY+  G  GY   + +F+ M  E    N ++FS  V   AS+
Sbjct: 67  VFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFS-GVFTAASS 125

Query: 228 GWVSFGKL-IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +FG L  HA  IK     ++ V +S+++MYC+  C+ DA + FD + E++ ++W TI
Sbjct: 126 SPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATI 185

Query: 287 IAGYE-KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+GY  +  + E   +F  M+ E  + + F +TS+++A      +  G+Q+H   ++ GL
Sbjct: 186 ISGYAMERMAFEAWELFLLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGL 245

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
               ++ NAL+ MY KCG + D+ K F    D+D +TW++M+ GY   G   EA+ LF  
Sbjct: 246 LSIASVGNALVTMYGKCGCLDDAFKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYN 305

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE 451
           M  +G +P    F+ V+ ACS  G ++EG    K ++ Y++    E
Sbjct: 306 MHLNGNKPSEFTFVGVINACSDIGALEEG----KQIHGYSLKAGYE 347



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 132/487 (27%), Positives = 223/487 (45%), Gaps = 31/487 (6%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWT--VFVEMVR 105
           L  +L+  Y   G I +A+ +F+ +  +DVVSW  +I GY+       ++   +F  M  
Sbjct: 47  LTNSLVNLYAKCGSIVKAKLVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRA 106

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS-M 164
               PN  T S V  A             H +AIK      ++V +SL+++Y  C I  M
Sbjct: 107 ENTLPNGHTFSGVFTAASSSPETFGGLQAHALAIKTSNFYDVFVGSSLINMY--CKIGCM 164

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
            +AR VF+ +  +N VSW T+I+GYA     +    +F  M  E    + + ++  + A 
Sbjct: 165 LDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFLLMRREEGAHDKFIYTSVLSAL 224

Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
                V +GK IH   +K+G  S   V N+++ MY +  CL DA + F+   +KD ITW+
Sbjct: 225 TVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDAFKTFELSGDKDDITWS 284

Query: 285 TIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
            +I GY ++G S E LN+F  M      P+ FTF  +I AC+ + AL  G+Q+H   ++ 
Sbjct: 285 AMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKA 344

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G +  +        + AKCG++ D++K F  + + D+V WTS                  
Sbjct: 345 GYECQIYFRKGFDYLKAKCGSLVDARKGFDYLKEPDIVLWTSC----------------- 387

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
             M    + P  +   +VL ACS    +++G +       Y  +    I   +  +  + 
Sbjct: 388 -RMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKC 446

Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEH--RLPNLGKLAALRVLDLKPNMMGTYII 521
           G +++   + + MP + D   W  ++    ++   L  L     LR    KP+    Y+ 
Sbjct: 447 GSLEDGNLVFRRMPSR-DIMTWNAMISGLSQNGEGLKALELFEELRHGTTKPD----YVT 501

Query: 522 LSNIYAA 528
             N+ +A
Sbjct: 502 FVNVLSA 508



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 142/277 (51%), Gaps = 4/277 (1%)

Query: 216 SFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM 275
           SF   +  C     +  GK IHA +++ G  S++ + NS++++Y +   +  A   F+ +
Sbjct: 12  SFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESI 71

Query: 276 TEKDLITWNTIIAGYEKSGS---SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSC 332
           T KD+++WN +I GY + G+   S  + +F +M++E   PN  TF+ +  A ++      
Sbjct: 72  TNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPETFG 131

Query: 333 GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA 392
           G Q HA  ++     ++ + ++LI+MY K G + D++K+F  + +R+ V+W +++ GY  
Sbjct: 132 GLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAM 191

Query: 393 HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEI 452
                EA ELF  M +     D+ ++ +VL+A +   LV  G +         +     +
Sbjct: 192 ERMAFEAWELFLLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASV 251

Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
              +V + G+ G + +A++  + +    D+  W  ++
Sbjct: 252 GNALVTMYGKCGCLDDAFKTFE-LSGDKDDITWSAMI 287



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 94/192 (48%), Gaps = 11/192 (5%)

Query: 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKI 371
           P   +F  ++  C     L  G+ +HA ++R G   ++ L N+L+++YAKCG+I  ++ +
Sbjct: 8   PQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLV 67

Query: 372 FSEMSDRDLVTWTSMMIGYGAHGHGKEA--IELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
           F  ++++D+V+W  ++ GY   G    +  +ELF  M      P+   F  V TA S + 
Sbjct: 68  FESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSP 127

Query: 430 LVDEGLK----YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVW 485
               GL+      K+ N Y+V     +    +++  + G + +A ++  ++P +   S W
Sbjct: 128 ETFGGLQAHALAIKTSNFYDVFVGSSL----INMYCKIGCMLDARKVFDTIPERNTVS-W 182

Query: 486 GPLLGACKEHRL 497
             ++      R+
Sbjct: 183 ATIISGYAMERM 194


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 203/577 (35%), Positives = 320/577 (55%), Gaps = 33/577 (5%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           +P+  ++    +I  Y   G++ +AR +FD MPER+VVSWT M+ GY       +A  +F
Sbjct: 78  MPQRNTVSFNGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLF 137

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
            EM R  V      +  +LK  +    + +A  +  M      E  + V  +++  Y  C
Sbjct: 138 WEMPRRNVVSWTVMIGGLLKESR----IDDAKKLFDMIP----EKDVVVVTNMIGGY--C 187

Query: 161 CIS-MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
            +  +D AR +F++MK +N  +WTT+++GYA +G     + V +++     E N  S++ 
Sbjct: 188 QVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGR----VDVARKLFEVMPERNEVSWTA 243

Query: 220 AVRACASTGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDC---LSDANQYFDEM 275
            +     +G +    +L  A  +K     N        +M  +F     +  A   F+ M
Sbjct: 244 MLMGYTQSGRMKEAFELFEAMPVKWIVACN--------EMILQFGLAGEMHRARMMFEGM 295

Query: 276 TEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334
            E+D  TWN +I  +E+ G   E L +F++M+ E  + N  +  S+++ CA+LA+L  G+
Sbjct: 296 KERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGR 355

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
           QVHA +VR   D +L +A+ LI MY KCG++  ++ IF+    +D+V W SM+ GY  HG
Sbjct: 356 QVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQHG 415

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIY 453
            G+EA+ +F +M  SGV+PD + F+ VL+ACS++G V EG + F++M   Y V P  E Y
Sbjct: 416 LGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEPGIEHY 475

Query: 454 GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513
            C+VDLLGRAGRV EA EL++ MP +PD  VWG LLGAC+ H   +L ++A  ++  L+P
Sbjct: 476 ACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALLGACRNHMKLDLAEVAVEKLAKLEP 535

Query: 514 NMMGTYIILSNIYAAEGKWEEFAKFR-KIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMG 572
              G Y++LS++YA +G+W +    R KI R +   K  G SWIEV  KV  F   D   
Sbjct: 536 KNAGPYVLLSHMYATKGRWRDVEVLRKKINRRV--IKFPGCSWIEVEKKVHMFTGGDSKS 593

Query: 573 SHTQY-VYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
              Q+ +  +LE L   + E  Y PD   ++HD++ E
Sbjct: 594 HPEQHMITQMLEKLSGFLREAGYCPDGSFVLHDVDEE 630



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 99/452 (21%), Positives = 190/452 (42%), Gaps = 62/452 (13%)

Query: 50  TNLIKSYFDEGLIEEARTLFDE--MPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM-VRN 106
           T+ I  Y   G I  AR +FD   +P+R + SW  M++ Y   +    A  +F +M  RN
Sbjct: 23  TSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQMPQRN 82

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V+ N                                  S YV+N +          + +
Sbjct: 83  TVSFNGMI-------------------------------SGYVKNGM----------VAD 101

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           AR VF+ M  +N VSWT+++ GY   G       +F EM       N  S+++ +     
Sbjct: 102 ARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEM----PRRNVVSWTVMIGGLLK 157

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +   K +   + +     ++ V+ +++  YC+   L +A + FDEM  +++ TW T+
Sbjct: 158 ESRIDDAKKLFDMIPE----KDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTM 213

Query: 287 IAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           ++GY K+G  +      ++  ER   N  ++T+++     +     G+   A  +   + 
Sbjct: 214 VSGYAKNGRVDVARKLFEVMPER---NEVSWTAML-----MGYTQSGRMKEAFELFEAMP 265

Query: 347 GNLALA-NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
               +A N +I  +   G +  ++ +F  M +RD  TW +M+  +   G   EA+ LF  
Sbjct: 266 VKWIVACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFAR 325

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M + GV  +    ++VL+ C+    +D G +    +     + +  +   ++ +  + G 
Sbjct: 326 MQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGD 385

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
           +  A  +     FK D  +W  ++    +H L
Sbjct: 386 LVRAKGIFNRFLFK-DVVMWNSMITGYSQHGL 416



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 88/192 (45%), Gaps = 29/192 (15%)

Query: 356 IDMYAKCGNISDSQKIF--SEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP 413
           I  Y + G+I +++K+F  + +  R + +W +M+  Y      ++A+ LFD+M      P
Sbjct: 26  ISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQM------P 79

Query: 414 DR--IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471
            R  + F  +++     G+V +  K F  M + NV      +  +V    + G V+EA +
Sbjct: 80  QRNTVSFNGMISGYVKNGMVADARKVFDVMPERNVVS----WTSMVRGYVQEGMVEEAEK 135

Query: 472 LIKSMPFKPDESVWGPLLGA-CKEHRLPNLGKLAALRVLDLKP--------NMMGTYIIL 522
           L   MP +   S W  ++G   KE R+ +  KL      D+ P        NM+G Y  +
Sbjct: 136 LFWEMPRRNVVS-WTVMIGGLLKESRIDDAKKL-----FDMIPEKDVVVVTNMIGGYCQV 189

Query: 523 SNIYAAEGKWEE 534
             +  A   ++E
Sbjct: 190 GRLDEARELFDE 201



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 96/210 (45%), Gaps = 21/210 (10%)

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
            +A  NA++  Y +     D+  +F +M  R+ V++  M+ GY  +G   +A ++FD M 
Sbjct: 51  TIASWNAMVSAYFESHKPRDALLLFDQMPQRNTVSFNGMISGYVKNGMVADARKVFDVMP 110

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
           +  V    + + +++      G+V+E  K F  M   NV      +  ++  L +  R+ 
Sbjct: 111 ERNV----VSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVS----WTVMIGGLLKESRID 162

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVL--DLKPNMMGTYIILSNI 525
           +A +L   +P K    V   + G C+      +G+L   R L  ++K   + T+  + + 
Sbjct: 163 DAKKLFDMIPEKDVVVVTNMIGGYCQ------VGRLDEARELFDEMKVRNVFTWTTMVSG 216

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSW 555
           YA  G+ +     RK+   M  + EV  SW
Sbjct: 217 YAKNGRVD---VARKLFEVMPERNEV--SW 241


>gi|115465559|ref|NP_001056379.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|52353535|gb|AAU44101.1| unknown protein [Oryza sativa Japonica Group]
 gi|113579930|dbj|BAF18293.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|215737011|dbj|BAG95940.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 687

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 191/561 (34%), Positives = 306/561 (54%), Gaps = 6/561 (1%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
            NLI  Y   G +  AR +FD MP R+ VS  ++++GY S   H  A  +   +   +  
Sbjct: 54  NNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLMSGYASSGRHRDALAL---LRVADFG 110

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
            N + LSS + A   ++S       HG AIK GL    YV ++++ +Y  C   MD A  
Sbjct: 111 LNEYVLSSAVAATAHVRSYDMGRQCHGYAIKAGLAEHPYVCSAVLHMYCQCA-HMDEAVK 169

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
           VF+++   N  ++ ++I G+   G   G   + + M+    + +  S+   +  CAST  
Sbjct: 170 VFDNVSSFNVFAFNSMINGFLDRGQMDGSTSIVRSMVRNVGQWDHVSYVAVLGHCASTKE 229

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
           V  G  +H   +K     N+ V ++++DMY + D   +AN+ F+ + EK++++W  I+  
Sbjct: 230 VVLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTA 289

Query: 290 YEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
           Y ++   E  L +F  M+ E   PN FT+   + +CA LA L  G  + A  ++ G  G 
Sbjct: 290 YTQNELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLATLKNGNALGACTMKTGHWGL 349

Query: 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
           L + NAL++MY+K G++ D++++F  M  RD+V+W S++IGY  HG  +EA+E F +M+ 
Sbjct: 350 LPVCNALMNMYSKSGSVEDARRVFLSMPCRDVVSWNSIIIGYAHHGRAREAMEAFHDMLF 409

Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFK-SMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
           +   P  + F+ VL+AC+  GLVDEG  Y    M +  V P KE Y C+V LL R GR+ 
Sbjct: 410 AEEVPSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEVGVKPGKEHYTCMVGLLCRVGRLD 469

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527
           EA   I+S     D   W  LL +C+ +R   LG   A ++  LKP  +GTY++LSN+YA
Sbjct: 470 EAERFIESNCIGTDVVAWRSLLSSCQVYRNYGLGHRVAEQIFQLKPKDVGTYVLLSNMYA 529

Query: 528 AEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIR 587
              +W+   K R++MR +G +KE G+SWI+V  +V  F + DK   + + +   L+ LI 
Sbjct: 530 KANRWDGVVKVRRLMRELGVRKEPGVSWIQVGSEVHVFTSEDKKHPYMEQITKKLQELID 589

Query: 588 HMNETAYEPDIDCLIHDLEGE 608
            +    Y P+I   +HD+E E
Sbjct: 590 KIKVIGYVPNIAVALHDVEDE 610



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 132/270 (48%), Gaps = 4/270 (1%)

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
           G +S GK +HA V++     ++   N+++ +Y +   L  A Q FD M  ++ ++ N ++
Sbjct: 30  GELSLGKAVHARVVR-AARFDVVQYNNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLM 88

Query: 288 AGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           +GY  SG     +  + ++   F  N +  +S +AA A + +   G+Q H   ++ GL  
Sbjct: 89  SGYASSGRHR--DALALLRVADFGLNEYVLSSAVAATAHVRSYDMGRQCHGYAIKAGLAE 146

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           +  + +A++ MY +C ++ ++ K+F  +S  ++  + SM+ G+   G    +  +   MV
Sbjct: 147 HPYVCSAVLHMYCQCAHMDEAVKVFDNVSSFNVFAFNSMINGFLDRGQMDGSTSIVRSMV 206

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
           ++  + D + ++AVL  C+    V  G +         +  N  +   +VD+ G+     
Sbjct: 207 RNVGQWDHVSYVAVLGHCASTKEVVLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFPH 266

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRL 497
           EA  + + +P K   S W  ++ A  ++ L
Sbjct: 267 EANRVFEVLPEKNIVS-WTAIMTAYTQNEL 295


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 183/509 (35%), Positives = 290/509 (56%), Gaps = 5/509 (0%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN-PNAFTLSSVLKACK 123
           A ++F    E DV++W  M+  + + N   +A   + EM+    N P+ FT  S+LK C 
Sbjct: 31  AYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCA 90

Query: 124 GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWT 183
            +       ++HG  +K  L   +Y+E +L+++YA C   + +AR +F  M  +N V WT
Sbjct: 91  LLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACG-DLKSARFLFERMGHRNKVVWT 149

Query: 184 TLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH 243
           ++I+GY  +      L ++K+M  +G   +  + +  V ACA    +  G  +H+ + + 
Sbjct: 150 SMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREM 209

Query: 244 GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMF 302
                  + +++++MY +   L  A Q FD++++KD+  W+ +I GY K+  S+E L +F
Sbjct: 210 DMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLF 269

Query: 303 SKMKS-ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK 361
            ++       PN  T  ++I+ACA L  L  G+ VH  I R     +++L N+LIDM++K
Sbjct: 270 REVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSK 329

Query: 362 CGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAV 421
           CG+I  +++IF  MS +DL++W SM+ G+  HG G+EA+  F  M  + ++PD I F+ V
Sbjct: 330 CGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGV 389

Query: 422 LTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKP 480
           LTACSHAGLV EG K F  +   Y V    E YGC+VDLL RAG + EA E I+ MP +P
Sbjct: 390 LTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQP 449

Query: 481 DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRK 540
           D ++WG +LGAC+ +    LG+ AA  +L L+P   G YI+LSNIYA    W E  K R+
Sbjct: 450 DGAIWGSMLGACRVYNNLELGEEAARFLLKLEPTNDGVYILLSNIYAKRKMWNEVKKVRE 509

Query: 541 IMRGMGSKKEVGMSWIEVRDKVCGFIAND 569
           +M   G +K  G S + + +    F+A D
Sbjct: 510 LMNEKGIQKTPGCSSVVIDNIAHSFLAGD 538



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 125/247 (50%), Gaps = 4/247 (1%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV- 104
           ++L + L+  Y   G ++ AR +FD++ ++DV +W+ +I GY   N   +A  +F E+  
Sbjct: 215 AVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAG 274

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
            + + PN  T+ +V+ AC  +  L     VH    +     S+ + NSL+D+++ C   +
Sbjct: 275 GSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCG-DI 333

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           D A+ +F+ M +K+ +SW +++ G+A  G G   L  F+ M    ++ +  +F   + AC
Sbjct: 334 DAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTAC 393

Query: 225 ASTGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLIT 282
           +  G V  G KL +     +G          ++D+ CR   L++A ++   M  + D   
Sbjct: 394 SHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAI 453

Query: 283 WNTIIAG 289
           W +++  
Sbjct: 454 WGSMLGA 460


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 179/504 (35%), Positives = 292/504 (57%), Gaps = 11/504 (2%)

Query: 115 LSSVLKACKGMKSL-----SNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS--MDNA 167
           LS +L+ C  +  L     S    +H  +I+ G+       N  + ++A   +S  M  A
Sbjct: 30  LSFILRKCISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHL-IFALVSLSAPMSFA 88

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEM-LLEGVEMNPYSFSIAVRACAS 226
             +FN ++  N  +W T+I G+A S N    + +F +M     +  + ++F    +A A 
Sbjct: 89  AQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAK 148

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              VS G+ IH+ V+++GF S   V NS++ MY  F     A Q F+ M+ +D + WN++
Sbjct: 149 LMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSV 208

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I G+  +G  +E L ++ +M SE   P+ FT  S+++AC  L AL+ G++VH  +V+ GL
Sbjct: 209 INGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGL 268

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
             N   +NAL+D+Y+KCGN  D+QK+F EM +R +V+WTS+++G   +G G EA++LF E
Sbjct: 269 VQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGE 328

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAG 464
           + + G++P  I F+ VL ACSH G++DEG  YF+ M  +Y + P  E +GC+VDLL RAG
Sbjct: 329 LERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAG 388

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           +V +AY+ I++MP  P+  +W  LLGAC  H    LG++A   +  L+    G +++LSN
Sbjct: 389 KVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSN 448

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           +YA+E +W +    RKIM   G KK  G S +E++++V  FI  D+    ++  Y +L  
Sbjct: 449 LYASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAK 508

Query: 585 LIRHMNETAYEPDIDCLIHDLEGE 608
           + + +    Y P    ++ D+E E
Sbjct: 509 ITQLLKIEGYVPRTVNVLADIEEE 532



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 167/335 (49%), Gaps = 5/335 (1%)

Query: 65  ARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM-VRNEVNPNAFTLSSVLKACK 123
           A  +F+++   ++ +W  MI G+      + A  +F +M   + + P+  T   + KA  
Sbjct: 88  AAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVA 147

Query: 124 GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWT 183
            +  +S    +H + ++ G +   +V+NSL+ +Y+    + ++A  VF  M +++ V+W 
Sbjct: 148 KLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFA-ESAYQVFEIMSYRDRVAWN 206

Query: 184 TLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH 243
           ++I G+A +G     L +++EM  EGVE + ++    + AC   G ++ G+ +H  ++K 
Sbjct: 207 SVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKV 266

Query: 244 GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMF 302
           G   N    N++LD+Y +     DA + FDEM E+ +++W ++I G   +G  +E L +F
Sbjct: 267 GLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLF 326

Query: 303 SKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-GLDGNLALANALIDMYAK 361
            +++ +   P+  TF  ++ AC+    L  G      +    G+   +     ++D+  +
Sbjct: 327 GELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCR 386

Query: 362 CGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGH 395
            G + D+      M    + V W +++     HGH
Sbjct: 387 AGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGH 421



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 127/253 (50%), Gaps = 3/253 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            +  +L+  Y   G  E A  +F+ M  RD V+W  +I G+      N+A T++ EM   
Sbjct: 172 FVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSE 231

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V P+ FT+ S+L AC  + +L+    VH   +K GL  + +  N+L+D+Y+ C  +  +
Sbjct: 232 GVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCG-NFRD 290

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A+ VF++M+ ++ VSWT+LI G A +G G   L +F E+  +G++ +  +F   + AC+ 
Sbjct: 291 AQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSH 350

Query: 227 TGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLITWN 284
            G +  G         ++G    +     ++D+ CR   + DA  Y   M    + + W 
Sbjct: 351 CGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWR 410

Query: 285 TIIAGYEKSGSSE 297
           T++      G  E
Sbjct: 411 TLLGACTIHGHLE 423


>gi|297833250|ref|XP_002884507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330347|gb|EFH60766.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 676

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 182/547 (33%), Positives = 303/547 (55%), Gaps = 4/547 (0%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           I +   ++  +L+  Y   G + +A  LFDEMP RDV+S  ++  G+   N   ++  V 
Sbjct: 85  IHRNALVVWNSLLSLYVKCGKLGDALKLFDEMPVRDVISQNIVFYGFLR-NRETESGFVL 143

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
           ++ +      +  TL+ VL  C   +      ++H +AI  G +  I V N L+  Y  C
Sbjct: 144 LKRMLGSGGFDQATLTIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKC 203

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
             S+ + R VF++M  +N ++WT +I+G   +     GL +F  M    V  N  ++  A
Sbjct: 204 GCSV-SGRWVFSEMAHRNVITWTAVISGLIENELHEDGLRLFCLMRRGLVHPNSVTYLSA 262

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           + AC+ +  +  G+ IHA + K G  S L + ++++DMY +   + DA + F+   E D 
Sbjct: 263 LAACSGSQMIVEGQQIHALLWKFGIESELCIESALMDMYSKCGSIEDAWKIFESSQEVDE 322

Query: 281 ITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           ++   I+ G  ++GS E  +  F +M       +    ++I+       +L  G+Q+H+ 
Sbjct: 323 VSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAILGVSFVDNSLGLGKQLHSL 382

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
           +++R   GN  + N LI+MY+KCG+++DSQ +F  M  R+ V+W SM+  +  HGHG  A
Sbjct: 383 VIKRKFCGNTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGHGLAA 442

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVD 458
           ++L++EM    V+P  + F+++L ACSH GL+D+G +    M + + + P  E Y C++D
Sbjct: 443 LKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGIKPRTEHYTCIID 502

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518
           +LGRAG +KEA   I S+P KPD  +W  LLGAC  H    +G+ AA ++ +  P+    
Sbjct: 503 MLGRAGLMKEAKSFIDSLPLKPDCKIWQALLGACSFHGDTEVGEYAAEQLFETAPDSSAA 562

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
           +I+++NIY++ GKW+E AK  K M+ MG  KE G+SWIE+  K   F+  DKM    + +
Sbjct: 563 HILMANIYSSRGKWKERAKTIKRMKEMGVTKETGISWIEMEKKTHSFVVEDKMHPQAEAI 622

Query: 579 YGVLEML 585
           Y VL  L
Sbjct: 623 YDVLSGL 629


>gi|115439575|ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|20160882|dbj|BAB89820.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113533598|dbj|BAF05981.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|125571815|gb|EAZ13330.1| hypothetical protein OsJ_03251 [Oryza sativa Japonica Group]
          Length = 608

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 194/608 (31%), Positives = 318/608 (52%), Gaps = 46/608 (7%)

Query: 38  PPLIPKG--PSILATNLIKSYFDEGLIEEA------RTLFDEMPERDVVSWTVMIAGYTS 89
           PP +P    P  LA  L+K+     L+ +A      R LFD +P         +I+  + 
Sbjct: 4   PPSLPYRHLPQHLA-GLLKTRPLHDLLSDASTSRAARHLFDAVPRPTPALCGTLISALSR 62

Query: 90  FNCHNQAWTVFVEMVR--NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSI 147
              H +    F  + R  ++V P    L  V+K+C  + +      VH  AI  GL G I
Sbjct: 63  LCSHQELLDAFSSLHRRGSDVPPGCVPL--VVKSCAILAASRQGKQVHCHAIVRGLLGDI 120

Query: 148 YVENSLMDVYA-----------------------TCCIS-------MDNARLVFNDMKWK 177
           +V+ +L+D YA                        C I+       +  AR +F+ M  +
Sbjct: 121 FVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLFDGMVRR 180

Query: 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIH 237
              SW ++I  YAH G     L +F+ ML EG   N  + +     CA TG +  GK   
Sbjct: 181 TSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETGKWAR 240

Query: 238 AAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS- 296
           + + +     N+ V  ++++MY +   + +A + FD M ++D++ W+T+IAGY ++G   
Sbjct: 241 SLIAEQDL-QNMIVHTALMEMYVKCRAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPH 299

Query: 297 ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALI 356
           E L +F +MK+    PN  T   +++ACA L +   G Q+ + +  + L     L +ALI
Sbjct: 300 ESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALI 359

Query: 357 DMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI 416
           DMY KCG++  ++ +F+ M  + ++TW SMM G   +G  ++AI L+ EM +  V+P+ I
Sbjct: 360 DMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEI 419

Query: 417 VFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKS 475
            F+A+LTAC+HAGLVD+G+ +FK M   ++V+P  E   C+VDLL ++GR++EAY+ I  
Sbjct: 420 TFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLLCKSGRLREAYKFICD 479

Query: 476 MPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEF 535
           M  +P+  +W  LL AC+ H    L KLAA ++L L+P+    Y++LSNIYA  G W + 
Sbjct: 480 MEVEPNAVIWSTLLSACRAHADVELAKLAASKLLVLEPDNSSIYVLLSNIYADAGLWGDV 539

Query: 536 AKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYE 595
            + R +MR    +K    SWIE+  +V  F+  D     +  ++ V++ +  H+++   +
Sbjct: 540 REIRDLMRSKNVQKLSAYSWIELDGEVHKFLVQDTYHPKSAEIFNVVDGMGLHLDDVDSD 599

Query: 596 PDIDCLIH 603
           PD+  L H
Sbjct: 600 PDLFVLEH 607


>gi|15232006|ref|NP_187516.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207468|sp|Q9SS83.1|PP220_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09040,
            mitochondrial; Flags: Precursor
 gi|5923669|gb|AAD56320.1|AC009326_7 hypothetical protein [Arabidopsis thaliana]
 gi|332641192|gb|AEE74713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1028

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 192/553 (34%), Positives = 312/553 (56%), Gaps = 8/553 (1%)

Query: 52   LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
            L+  Y   G +E+AR +F+ M +RD V+W  +I  Y      ++A+ +F  M    +  +
Sbjct: 469  LVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSD 528

Query: 112  AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
               L+S LKAC  +  L     VH +++K GL+  ++  +SL+D+Y+ C I  D AR VF
Sbjct: 529  GACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKD-ARKVF 587

Query: 172  NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
            + +   + VS   LI GY+ + N    + +F+EML  GV  +  +F+  V AC     ++
Sbjct: 588  SSLPEWSVVSMNALIAGYSQN-NLEEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLT 646

Query: 232  FGKLIHAAVIKHGFGSNLPVMN-SILDMYCRFDCLSDANQYFDEMTE-KDLITWNTIIAG 289
             G   H  + K GF S    +  S+L MY     +++A   F E++  K ++ W  +++G
Sbjct: 647  LGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSG 706

Query: 290  YEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348
            + ++G   E L  + +M+ +   P+  TF +++  C+ L++L  G+ +H+ I     D +
Sbjct: 707  HSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLD 766

Query: 349  LALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
               +N LIDMYAKCG++  S ++F EM  R ++V+W S++ GY  +G+ ++A+++FD M 
Sbjct: 767  ELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMR 826

Query: 408  KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRV 466
            +S + PD I F+ VLTACSHAG V +G K F+ M   Y +    +   C+VDLLGR G +
Sbjct: 827  QSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYL 886

Query: 467  KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
            +EA + I++   KPD  +W  LLGAC+ H     G+++A ++++L+P     Y++LSNIY
Sbjct: 887  QEADDFIEAQNLKPDARLWSSLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIY 946

Query: 527  AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
            A++G WE+    RK+MR  G KK  G SWI+V  +   F A DK  S    +   LE L 
Sbjct: 947  ASQGCWEKANALRKVMRDRGVKKVPGYSWIDVEQRTHIFAAGDKSHSEIGKIEMFLEDLY 1006

Query: 587  RHMNETA-YEPDI 598
              M + A   PDI
Sbjct: 1007 DLMKDDAVVNPDI 1019



 Score =  247 bits (630), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 144/419 (34%), Positives = 226/419 (53%), Gaps = 6/419 (1%)

Query: 45  PSILA-TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           P  LA   +I +Y   G +++AR LF EM   DVV+W VMI+G+    C   A   F  M
Sbjct: 259 PDHLAFVTVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNM 318

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
            ++ V     TL SVL A   + +L    +VH  AIK GL  +IYV +SL+ +Y+ C   
Sbjct: 319 RKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKC-EK 377

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           M+ A  VF  ++ KNDV W  +I GYAH+G  +  + +F +M   G  ++ ++F+  +  
Sbjct: 378 MEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLST 437

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           CA++  +  G   H+ +IK     NL V N+++DMY +   L DA Q F+ M ++D +TW
Sbjct: 438 CAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTW 497

Query: 284 NTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           NTII  Y +    SE  ++F +M       +     S + AC  +  L  G+QVH   V+
Sbjct: 498 NTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVK 557

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            GLD +L   ++LIDMY+KCG I D++K+FS + +  +V+  +++ GY +  + +EA+ L
Sbjct: 558 CGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGY-SQNNLEEAVVL 616

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461
           F EM+  GV P  I F  ++ AC     +  G ++   +     +   E  G  + LLG
Sbjct: 617 FQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLG--ISLLG 673



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 120/444 (27%), Positives = 226/444 (50%), Gaps = 3/444 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + ++L+  Y     +E A  +F+ + E++ V W  MI GY      ++   +F++M  + 
Sbjct: 364 VGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSG 423

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
            N + FT +S+L  C     L   +  H + IK+ L  +++V N+L+D+YA C  ++++A
Sbjct: 424 YNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCG-ALEDA 482

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R +F  M  +++V+W T+I  Y    N      +FK M L G+  +    +  ++AC   
Sbjct: 483 RQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHV 542

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  GK +H   +K G   +L   +S++DMY +   + DA + F  + E  +++ N +I
Sbjct: 543 HGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALI 602

Query: 288 AGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           AGY ++   E + +F +M +   +P+  TF +I+ AC    +L+ G Q H  I +RG   
Sbjct: 603 AGYSQNNLEEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSS 662

Query: 348 NLA-LANALIDMYAKCGNISDSQKIFSEMSD-RDLVTWTSMMIGYGAHGHGKEAIELFDE 405
               L  +L+ MY     ++++  +FSE+S  + +V WT MM G+  +G  +EA++ + E
Sbjct: 663 EGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKE 722

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M   GV PD+  F+ VL  CS    + EG      +     + ++     ++D+  + G 
Sbjct: 723 MRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGD 782

Query: 466 VKEAYELIKSMPFKPDESVWGPLL 489
           +K + ++   M  + +   W  L+
Sbjct: 783 MKGSSQVFDEMRRRSNVVSWNSLI 806



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 143/497 (28%), Positives = 234/497 (47%), Gaps = 69/497 (13%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L   ++  Y     +  A   FD + E+DV +W  M++ Y+S     +    FV +  N+
Sbjct: 97  LGNAIVDLYAKCAQVSYAEKQFDFL-EKDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQ 155

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           + PN FT S VL  C    ++     +H   IK GLE + Y   +L+D+YA  C  + +A
Sbjct: 156 IFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAK-CDRISDA 214

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSG----------------------------NGYGGL 199
           R VF  +   N V WT L +GY  +G                            N Y  L
Sbjct: 215 RRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINTYIRL 274

Query: 200 GVFKEMLLEGVEMNP------------------------YSFSI---AVRACAST----- 227
           G  K+  L   EM+                         Y F++   +V++  ST     
Sbjct: 275 GKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVL 334

Query: 228 ---GWVS---FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
              G V+    G ++HA  IK G  SN+ V +S++ MY + + +  A + F+ + EK+ +
Sbjct: 335 SAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDV 394

Query: 282 TWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
            WN +I GY  +G S + + +F  MKS  ++ + FTFTS+++ CA    L  G Q H+ I
Sbjct: 395 FWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSII 454

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           +++ L  NL + NAL+DMYAKCG + D+++IF  M DRD VTW +++  Y    +  EA 
Sbjct: 455 IKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAF 514

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLL 460
           +LF  M   G+  D     + L AC+H   + +G +         ++ +      ++D+ 
Sbjct: 515 DLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMY 574

Query: 461 GRAGRVKEAYELIKSMP 477
            + G +K+A ++  S+P
Sbjct: 575 SKCGIIKDARKVFSSLP 591



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 164/355 (46%), Gaps = 28/355 (7%)

Query: 201 VFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYC 260
           VF EM        P   ++A+R          GK +H+  +  G  S   + N+I+D+Y 
Sbjct: 64  VFDEM--------PQRLALALR---------IGKAVHSKSLILGIDSEGRLGNAIVDLYA 106

Query: 261 RFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTS 319
           +   +S A + FD   EKD+  WN++++ Y   G   + L  F  +   +  PN FTF+ 
Sbjct: 107 KCAQVSYAEKQFD-FLEKDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSI 165

Query: 320 IIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD 379
           +++ CA    +  G+Q+H  +++ GL+ N     AL+DMYAKC  ISD++++F  + D +
Sbjct: 166 VLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEWIVDPN 225

Query: 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439
            V WT +  GY   G  +EA+ +F+ M   G RPD + F+ V+      G + +    F 
Sbjct: 226 TVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINTYIRLGKLKDARLLFG 285

Query: 440 SMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM---PFKPDESVWGPLLGACKEHR 496
            M+    +P+   +  ++   G+ G    A E   +M     K   S  G +L A     
Sbjct: 286 EMS----SPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIG--I 339

Query: 497 LPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEV 551
           + NL     +    +K  +     + S++ +   K E+     K+   +  K +V
Sbjct: 340 VANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDV 394



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 158/349 (45%), Gaps = 38/349 (10%)

Query: 134 VHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSG 193
           VH  ++  G++    + N+++D+YA C   +  A   F D   K+  +W ++++ Y+  G
Sbjct: 82  VHSKSLILGIDSEGRLGNAIVDLYAKCA-QVSYAEKQF-DFLEKDVTAWNSMLSMYSSIG 139

Query: 194 NGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMN 253
                L  F  +    +  N ++FSI +  CA    V FG+ IH ++IK G   N     
Sbjct: 140 KPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGG 199

Query: 254 SILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSP 312
           +++DMY + D +SDA + F+ + + + + W  + +GY K+G   E + +F +M+ E   P
Sbjct: 200 ALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRP 259

Query: 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIF 372
           +   F ++                                   I+ Y + G + D++ +F
Sbjct: 260 DHLAFVTV-----------------------------------INTYIRLGKLKDARLLF 284

Query: 373 SEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD 432
            EMS  D+V W  M+ G+G  G    AIE F  M KS V+  R    +VL+A      +D
Sbjct: 285 GEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLD 344

Query: 433 EGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481
            GL          +  N  +   +V +  +  +++ A ++ +++  K D
Sbjct: 345 LGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKND 393



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 169/356 (47%), Gaps = 40/356 (11%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S+++ N + + + +  +EEA  LF EM  R                              
Sbjct: 594 SVVSMNALIAGYSQNNLEEAVVLFQEMLTRG----------------------------- 624

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGL--EGSIYVENSLMDVYATCCIS 163
             VNP+  T +++++AC   +SL+     HG   K G   EG  Y+  SL+ +Y      
Sbjct: 625 --VNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGE-YLGISLLGMYMN-SRG 680

Query: 164 MDNARLVFNDMKW-KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
           M  A  +F+++   K+ V WT +++G++ +G     L  +KEM  +GV  +  +F   +R
Sbjct: 681 MTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLR 740

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLI 281
            C+    +  G+ IH+ +       +    N+++DMY +   +  ++Q FDEM  + +++
Sbjct: 741 VCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVV 800

Query: 282 TWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           +WN++I GY K+G +E  L +F  M+     P+  TF  ++ AC+    +S G+++   +
Sbjct: 801 SWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMM 860

Query: 341 V-RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-DLVTWTSMMIGYGAHG 394
           + + G++  +     ++D+  + G + ++       + + D   W+S++     HG
Sbjct: 861 IGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHG 916


>gi|125547017|gb|EAY92839.1| hypothetical protein OsI_14639 [Oryza sativa Indica Group]
          Length = 702

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 201/568 (35%), Positives = 310/568 (54%), Gaps = 14/568 (2%)

Query: 52  LIKSYFDEGLIEEARTLF-DEMPER-DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           L+  Y   GL+ +A+ LF    P R DVV+W  M++        ++A     +MV   V 
Sbjct: 57  LLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVR 116

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG-LEGSIYVENSLMDVYATCCISMDNAR 168
           P+  T +S L AC  ++ L     +H   IK+  L  + +V ++L+D+YAT    +  AR
Sbjct: 117 PDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATH-EQVGKAR 175

Query: 169 LVFNDM--KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAVRACA 225
            VF+ +    K    W  +I GYA +G     L +F  M  E G      + +  + ACA
Sbjct: 176 QVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACA 235

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
            +   +  + +H  V+K G   N  V N+++DMY R      A + F  +   D+++WNT
Sbjct: 236 RSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNT 295

Query: 286 IIAGYEKSGS-SECLNMFSKMKSER---FSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           +I G    G  ++   +  +M+        PN  T  +++  CA LAA + G+++H   V
Sbjct: 296 LITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAV 355

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           R  LD ++A+ +AL+DMYAKCG ++ S+ +F  +  R+ +TW  +++ YG HG G EA  
Sbjct: 356 RHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATV 415

Query: 402 LFDEMVKSG-VRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDL 459
           LFD M  SG  RP+ + FMA L ACSH+G+VD GL+ F +M  D+ V P  +I  CVVD+
Sbjct: 416 LFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDI 475

Query: 460 LGRAGRVKEAYELIKSMPFKPDE-SVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518
           LGRAGR+ EAY ++ SM     + S W  +LGAC+ HR  +LG++A  R+L+L+P     
Sbjct: 476 LGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASH 535

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
           Y++L NIY+A G+W   A+ R  MR  G  KE G SWIEV   +  F+A +     ++ V
Sbjct: 536 YVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEV 595

Query: 579 YGVLEMLIRHMNETAYEPDIDCLIHDLE 606
           +  +E L   M    Y PD  C++HD++
Sbjct: 596 HAHMEALWGEMVARGYTPDTSCVLHDMD 623



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 146/305 (47%), Gaps = 22/305 (7%)

Query: 205 MLLEGVEMNPYSFSIAVRAC----ASTGWVSFGKLIHAAVIKHGF--GSNLPVMNSILDM 258
           ML  G  +  ++    +RA     A+   V  G+  HA  +K+G   G      N++L M
Sbjct: 1   MLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSM 60

Query: 259 YCRFDCLSDANQYFDEMT--EKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCF 315
           Y R   ++DA + F   T    D++TWNT+++   +SG   E +     M +    P+  
Sbjct: 61  YARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGV 120

Query: 316 TFTSIIAACATLAALSCGQQVHAGIVRRG-LDGNLALANALIDMYAKCGNISDSQKIFSE 374
           TF S + AC+ L  L  G+++HA +++   L  N  +A+AL+DMYA    +  ++++F  
Sbjct: 121 TFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDM 180

Query: 375 MSD--RDLVTWTSMMIGYGAHGHGKEAIELFDEM-VKSGVRPDRIVFMAVLTACSHAGLV 431
           + D  + L  W +M+ GY   G  +EA+ LF  M  ++G  P      +VL AC+ +   
Sbjct: 181 VPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARS--- 237

Query: 432 DEGLKYFKSMNDYNVNP----NKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGP 487
            E     ++++ Y V      N+ +   ++D+  R G+   A  +  +M   PD   W  
Sbjct: 238 -EAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIF-AMVDLPDVVSWNT 295

Query: 488 LLGAC 492
           L+  C
Sbjct: 296 LITGC 300



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 120/252 (47%), Gaps = 10/252 (3%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   +   L+  Y   G  + AR +F  +   DVVSW  +I G         A+ +  EM
Sbjct: 257 GNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREM 316

Query: 104 VRNE---VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
            + E   V PNA TL ++L  C  + + +    +HG A++  L+  + V ++L+D+YA C
Sbjct: 317 QQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKC 376

Query: 161 -CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG-VEMNPYSFS 218
            C+++  +R VF+ +  +N ++W  LI  Y   G G     +F  M   G    N  +F 
Sbjct: 377 GCLAL--SRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFM 434

Query: 219 IAVRACASTGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT- 276
            A+ AC+ +G V  G +L HA    HG      ++  ++D+  R   L +A      M  
Sbjct: 435 AALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEA 494

Query: 277 -EKDLITWNTII 287
            E+ +  W+T++
Sbjct: 495 GEQQVSAWSTML 506


>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 203/557 (36%), Positives = 310/557 (55%), Gaps = 30/557 (5%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + TNL K    +G I EAR LFDEM E DV++WT +I+GY       +A  +F    R +
Sbjct: 73  MITNLSK----DGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFD---RVD 125

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
              N  T ++++        +S+A  +      E    ++   N+++D YA     +D+A
Sbjct: 126 AKKNVVTWTAMVGGYIRSNKISDAEKL----FNEMPNKNVVSWNTMIDGYAQNG-RIDSA 180

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
             +F  M  +N VSW T+++  A  G       +F  M     E +  S++  +      
Sbjct: 181 MYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRM----PERDVISWTAMIAGLLDE 236

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
               F ++            +LP  N+++    +   L  A + F+EM +K++I+W T+I
Sbjct: 237 ALDLFERMPE---------RDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMI 287

Query: 288 AGYEKSGSSE-CLNMFSKMKSERFS-PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
            G  + G SE  L +FS+M S   + PN  TF S++ AC+ LA L  GQQVH  I +   
Sbjct: 288 TGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVY 347

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSE--MSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
             +  + +ALI+MY+KCG +  ++K+F +   S RDLV+W  ++  Y  HG+GKEAI  F
Sbjct: 348 QDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFF 407

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGR 462
            EM KSG +PD + ++ +L+ACSHAGLV+EGLKYF  +  D ++   ++ Y C+VDL GR
Sbjct: 408 KEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGR 467

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AGR+KEA+  I+ +  KP   VWG LL  C  H    +GK AA ++L+++P   GTY++L
Sbjct: 468 AGRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKIGKQAAKKLLEVEPENAGTYLLL 527

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           SNIYA+ GKW E A+ R  M+  G KK+ G SWIEV ++V  F+  DK  S ++ +Y +L
Sbjct: 528 SNIYASTGKWREAARVRLKMKDKGLKKQPGCSWIEVGNRVHVFVVGDKSHSQSKLIYSLL 587

Query: 583 EMLIRHMNETAYEPDID 599
             L   M +  YEP+ D
Sbjct: 588 RDLHSKMKKAGYEPNND 604



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 32/161 (19%)

Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
           +DGN+A  N +I   +K G I +++++F EM + D++TWT+++ GY   G  +EA  LFD
Sbjct: 63  VDGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFD 122

Query: 405 E------------MVKSGVRPDRI----------------VFMAVLTACSHAGLVDEGLK 436
                        MV   +R ++I                 +  ++   +  G +D  + 
Sbjct: 123 RVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMY 182

Query: 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMP 477
            F+ M + NV      +  V+ +L + GR++EA  L   MP
Sbjct: 183 LFEKMPERNVVS----WNTVMSMLAQCGRIEEARRLFDRMP 219


>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic [Vitis vinifera]
 gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
          Length = 880

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 191/563 (33%), Positives = 309/563 (54%), Gaps = 3/563 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           +L T L+  Y     IE+A  +     E DV  WT +I+G+T      +A T F EM  +
Sbjct: 252 VLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETS 311

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
            V PN FT S +L AC  + +L     +H   +  GLE  + V NSL+D+Y  C   +++
Sbjct: 312 GVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIED 371

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A   F  +   N +SWT+LI G++  G     + VF  M   GV  N ++ S  + AC +
Sbjct: 372 AVRAFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGACGT 431

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              ++  + +H  +IK+   +++ V N+++D Y     + DA      M  +D+IT+ ++
Sbjct: 432 IKSLTQTRKLHGYIIKNNADNDVVVGNALVDAYAGLGMVDDAWHVTSMMKHRDVITYTSL 491

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
                ++G+ E  LN+ + M  +    + F+  S ++A A +  +  G+Q+H   V+ GL
Sbjct: 492 ATRINQTGNHEMALNIITHMNKDDVRMDGFSLASFLSAAAGIPIMETGKQLHCYSVKSGL 551

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
              ++++N L+D+Y KCG I D+ + F E+++ D V+W  ++ G  ++GH   A+  F++
Sbjct: 552 GSWISVSNGLVDLYGKCGCIHDAHRSFLEITEPDAVSWNGLIFGLASNGHVSSALSAFED 611

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAG 464
           M  +GV PD+I  + VL ACSH GLVD GL YF+SM + + + P  + Y C+VDLLGRAG
Sbjct: 612 MRLAGVEPDQITCLLVLYACSHGGLVDMGLDYFQSMREKHGIRPQLDHYVCLVDLLGRAG 671

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           R++EA  +I++MPFKPD  ++  LLGACK H    LG+  A + L+L P+    Y++L+N
Sbjct: 672 RLEEAMNVIETMPFKPDALIYKTLLGACKLHGNIPLGEHMARQGLELDPSDPAFYVLLAN 731

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           +Y   G+ E   K R++MR  G +K  G SW+E R+ V  F A D        ++  +E 
Sbjct: 732 LYDDSGRSELGEKTRRMMRERGVRKNPGQSWMEERNMVHLFTAGDTSHPQIGKIHEKIES 791

Query: 585 LIRHM-NETAYEPDIDCLIHDLE 606
           LI    N+  +  +   L H  E
Sbjct: 792 LIAQFRNQGIWYQENRALAHHSE 814



 Score =  241 bits (614), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 141/478 (29%), Positives = 254/478 (53%), Gaps = 18/478 (3%)

Query: 17  KIPPIIKQSL----------QSVKKSSIQSDPPLIPKG---PSILATNLIKSYFDEGLIE 63
           KIP  I+ SL          +SV+   I    P+I  G      L+ NL+  Y     + 
Sbjct: 9   KIPSKIEYSLLKDIVSFCNSRSVR-DGICIHSPIIKMGFQEDMFLSNNLLSLYGKCFGVA 67

Query: 64  EARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACK 123
           EAR LFDEMP RDV SWT++++ Y     H +A  +F  M+ +   PN FTLS+ L++C 
Sbjct: 68  EARQLFDEMPCRDVASWTMLMSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCS 127

Query: 124 GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWT 183
            ++  ++      +  K G + +  + ++L+D Y+ C  + +  R VF  M   + VSWT
Sbjct: 128 ALREFNHGTRFQALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYR-VFEYMNNGDIVSWT 186

Query: 184 TLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH 243
            +++ +  +G+    L ++  M+  GV  N ++F + + A +S   +++GKL+HA ++  
Sbjct: 187 MMVSSFVEAGSWSQALQLYHRMIQTGVAPNEFTF-VKLLAASSFLGLNYGKLVHAHLMMW 245

Query: 244 GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMF 302
               NL +  +++DMYC+   + DA +      E D+  W  II+G+ +S    E +  F
Sbjct: 246 RIELNLVLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAF 305

Query: 303 SKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362
            +M++    PN FT++ I+ AC+++ AL  G+Q+H+ +V  GL+ ++++ N+L+DMY KC
Sbjct: 306 HEMETSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKC 365

Query: 363 GN-ISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAV 421
            N I D+ + F  ++  ++++WTS++ G+  HG  +E+I++F  M   GVRP+      +
Sbjct: 366 SNMIEDAVRAFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTI 425

Query: 422 LTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
           L AC     + +  K    +   N + +  +   +VD     G V +A+ +   M  +
Sbjct: 426 LGACGTIKSLTQTRKLHGYIIKNNADNDVVVGNALVDAYAGLGMVDDAWHVTSMMKHR 483



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/431 (27%), Positives = 221/431 (51%), Gaps = 12/431 (2%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM 174
           L  ++  C   +S+ +   +H   IK G +  +++ N+L+ +Y  C   +  AR +F++M
Sbjct: 19  LKDIVSFCNS-RSVRDGICIHSPIIKMGFQEDMFLSNNLLSLYGKC-FGVAEARQLFDEM 76

Query: 175 KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGK 234
             ++  SWT L++ Y   GN    L +F  ML+ G   N ++ S A+R+C++    + G 
Sbjct: 77  PCRDVASWTMLMSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGT 136

Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG 294
              A V K GF SN  + ++++D Y +  C  +A + F+ M   D+++W  +++ + ++G
Sbjct: 137 RFQALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAG 196

Query: 295 S-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353
           S S+ L ++ +M     +PN FTF  ++AA + L  L+ G+ VHA ++   ++ NL L  
Sbjct: 197 SWSQALQLYHRMIQTGVAPNEFTFVKLLAASSFL-GLNYGKLVHAHLMMWRIELNLVLKT 255

Query: 354 ALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP 413
           AL+DMY KC +I D+ K+     + D+  WT+++ G+      +EAI  F EM  SGV P
Sbjct: 256 ALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVP 315

Query: 414 DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR-AGRVKEAYEL 472
           +   +  +L ACS    +D G +    +    +  +  +   +VD+  + +  +++A   
Sbjct: 316 NNFTYSGILNACSSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRA 375

Query: 473 IKSMPFKPDESVWGPLLGACKEHRL--PNLGKLAALRVLDLKPNMMGTYIILSNIYAAEG 530
            + +   P+   W  L+    EH L   ++    A++ + ++PN       LS I  A G
Sbjct: 376 FRGIA-SPNVISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPN----SFTLSTILGACG 430

Query: 531 KWEEFAKFRKI 541
             +   + RK+
Sbjct: 431 TIKSLTQTRKL 441


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 182/510 (35%), Positives = 289/510 (56%), Gaps = 9/510 (1%)

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           E NP   T   ++ +C    SLS    VH   +  G +   ++   L+++Y     S+D 
Sbjct: 73  EPNPTQQTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYYELG-SIDR 131

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA- 225
           A  VF++ + +    W  L    A  G+G   L ++ +M   G   + ++++  ++AC  
Sbjct: 132 ALKVFDETRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVV 191

Query: 226 ---STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
              S   +  GK IHA +++HG+ +N+ VM ++LD+Y +F  +S AN  F  M  K+ ++
Sbjct: 192 SELSVCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVS 251

Query: 283 WNTIIAGYEKSGSS-ECLNMFSKMKSERFS--PNCFTFTSIIAACATLAALSCGQQVHAG 339
           W+ +IA + K+    + L +F  M  E  +  PN  T  +++ ACA LAAL  G+ +H  
Sbjct: 252 WSAMIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGY 311

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
           I+RR LD  L + NALI MY +CG +   Q++F  M  RD+V+W S++  YG HG GK+A
Sbjct: 312 ILRRQLDSILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKKA 371

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVD 458
           I++F+ M+  GV P  I F+ VL ACSHAGLV+EG   F+SM + Y ++P  E Y C+VD
Sbjct: 372 IQIFENMIHQGVSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVD 431

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518
           LLGRA R+ EA +LI+ M F+P  +VWG LLG+C+ H    L + A+  + +L+P   G 
Sbjct: 432 LLGRANRLGEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTVLFELEPRNAGN 491

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
           Y++L++IYA    W E     K++   G +K  G SWIEV+ KV  F++ D+     + +
Sbjct: 492 YVLLADIYAEAKLWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEI 551

Query: 579 YGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
           + +L  L   M    Y P  + +++DL+ E
Sbjct: 552 HALLVKLSNEMKAQGYVPQTNVVLYDLDEE 581



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 151/304 (49%), Gaps = 19/304 (6%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           LAT LI  Y++ G I+ A  +FDE  ER +  W  +           +   ++++M    
Sbjct: 115 LATKLINMYYELGSIDRALKVFDETRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIG 174

Query: 108 VNPNAFTLSSVLKACK----GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
              + FT + VLKAC      +  L     +H   ++ G E +I+V  +L+DVYA    S
Sbjct: 175 TPSDRFTYTYVLKACVVSELSVCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFG-S 233

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA--V 221
           +  A  VF  M  KN VSW+ +I  +A +      L +F+ M+ E     P S ++   +
Sbjct: 234 VSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNML 293

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
           +ACA    +  GKLIH  +++    S LPV+N+++ MY R   +    + FD M ++D++
Sbjct: 294 QACAGLAALEQGKLIHGYILRRQLDSILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVV 353

Query: 282 TWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           +WN++I+ Y   G   + + +F  M  +  SP+  +F +++ AC+           HAG+
Sbjct: 354 SWNSLISIYGMHGFGKKAIQIFENMIHQGVSPSYISFITVLGACS-----------HAGL 402

Query: 341 VRRG 344
           V  G
Sbjct: 403 VEEG 406


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 188/517 (36%), Positives = 297/517 (57%), Gaps = 8/517 (1%)

Query: 98  TVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVY 157
            VF+  + N        + S++ A     S+S  + +H   IK       ++ + L+ +Y
Sbjct: 125 AVFLGKLHNSSLLADSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMY 184

Query: 158 ATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGG--LGVFKEMLLE-GVEMNP 214
                  D  RL F++M  ++ VSW +L++G   SG GY G  L  F  M  E G + N 
Sbjct: 185 FKLGYDEDAQRL-FDEMPNRDLVSWNSLMSGL--SGRGYLGACLNAFCRMRTESGRQPNE 241

Query: 215 YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE 274
            +    V ACA  G +  GK +H  V+K G      V+NS+++MY +   L  A+Q F+E
Sbjct: 242 VTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEE 301

Query: 275 MTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG 333
           M  + L++WN+++  +  +G +E  +++F+ MK    +P+  T  +++ AC         
Sbjct: 302 MPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQA 361

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
           + +HA I R G + ++ +A AL+++YAK G ++ S+ IF E+ DRD + WT+M+ GY  H
Sbjct: 362 ESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVH 421

Query: 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEI 452
             G+EAI+LFD MVK GV  D + F  +L+ACSH+GLV+EG KYF+ M++ Y V P  + 
Sbjct: 422 ACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDH 481

Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLK 512
           Y C+VDLLGR+GR+++AYELIKSMP +P   VWG LLGAC+ +    LGK  A ++L L 
Sbjct: 482 YSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLD 541

Query: 513 PNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMG 572
           P+    YI+LSNIY+A G W   +K R +M+     +  G S+IE  +K+  F+  D++ 
Sbjct: 542 PSDHRNYIMLSNIYSAAGLWRXASKVRXLMKERRLTRNPGCSFIEHGNKIHRFVVGDQLH 601

Query: 573 SHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGET 609
             +  ++  LE LIR + E    P  + ++HD++ E 
Sbjct: 602 PRSDEIHTKLEELIRKIXEAGCAPKTEFVLHDIDEEV 638



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 169/343 (49%), Gaps = 28/343 (8%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +   L+  YF  G  E+A+ LFDEMP RD+VSW  +++G +           F  M R E
Sbjct: 176 IGDRLVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRM-RTE 234

Query: 108 V--NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
               PN  TL SV+ AC  M +L     +HG+ +K G+ G   V NSL+++Y      +D
Sbjct: 235 SGRQPNEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGF-LD 293

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A  +F +M  ++ VSW +++  + H+G    G+ +F  M   G+  +  +    +RAC 
Sbjct: 294 AASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACT 353

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
            TG     + IHA + + GF +++ +  ++L++Y +   L+ +   F+E+ ++D I W  
Sbjct: 354 DTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTA 413

Query: 286 IIAGYE-KSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
           ++AGY   +   E + +F  M  E    +  TFT +++AC+           H+G+V  G
Sbjct: 414 MLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACS-----------HSGLVEEG 462

Query: 345 ------------LDGNLALANALIDMYAKCGNISDSQKIFSEM 375
                       ++  L   + ++D+  + G + D+ ++   M
Sbjct: 463 KKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSM 505



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 99/191 (51%), Gaps = 1/191 (0%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G + +  +LI  Y   G ++ A  LF+EMP R +VSW  M+  +       +   +F  M
Sbjct: 274 GKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLM 333

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
            R  +NP+  T+ ++L+AC        A  +H    + G    I +  +L+++YA     
Sbjct: 334 KRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLG-R 392

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           ++ +  +F ++K ++ ++WT ++ GYA    G   + +F  M+ EGVE++  +F+  + A
Sbjct: 393 LNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSA 452

Query: 224 CASTGWVSFGK 234
           C+ +G V  GK
Sbjct: 453 CSHSGLVEEGK 463


>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1038

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 187/564 (33%), Positives = 302/564 (53%), Gaps = 4/564 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +   L++ Y   G  EEA  +F +MP +D++SW  ++A + +      A  +   M+R  
Sbjct: 399 VCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFVNDGRSLDALGILCSMIRTG 458

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
            + N  T +S L AC   +      ++HG+ +  GL  +  + N+L+ +Y      M  +
Sbjct: 459 KSVNYVTFTSALAACFSPEFFDKGRILHGLVVVSGLFDNQIIGNALVSMYGKIG-GMSTS 517

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R V   M  ++ V+W  LI GYA + +    L  F+ + +EGV  N  +    + AC   
Sbjct: 518 RRVLLQMPRRDVVAWNALIGGYAENEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVP 577

Query: 228 G-WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
           G  +  GK +HA ++  GF S+  V NS++ MY +   LS +   F+ +  + +ITWN I
Sbjct: 578 GDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRSIITWNAI 637

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           +A     G   E L + SKM+S   S + F+F+  ++A A LA L  GQQ+H   V+ G 
Sbjct: 638 LAANAHHGHGEEVLKLVSKMRSFGLSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGF 697

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           + +  + NA  DMY+KCG I +  K+     +R L +W  ++   G HG+ +E  E F E
Sbjct: 698 ELDCFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCETFHE 757

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAG 464
           M++ G++P  + F+++LTACSH GLVD+GL Y+  +  D+ + P  E   CV+DLLGR+G
Sbjct: 758 MLEMGIKPGHVTFVSLLTACSHGGLVDQGLAYYDMIAKDFGLEPAIEHCICVIDLLGRSG 817

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           R+ EA   I  MP KP++ VW  LL +CK HR  + G+ AA  +  L+P     +++ SN
Sbjct: 818 RLAEAETFISKMPMKPNDLVWRSLLASCKIHRDLDRGRKAAENLSKLEPEDDSVFVLSSN 877

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           ++A  G+WE+    RK M     KK+   SW++++DKV  F   D+    T  +Y  LE 
Sbjct: 878 MFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLED 937

Query: 585 LIRHMNETAYEPDIDCLIHDLEGE 608
           + + + E+ Y  D    + D + E
Sbjct: 938 IKKLIKESGYVADTSQALQDTDEE 961



 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 139/483 (28%), Positives = 244/483 (50%), Gaps = 7/483 (1%)

Query: 46  SILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
           S+L TN LI  Y   G ++ AR LFD+MP R+ VSW  M++G      + +    F +M 
Sbjct: 92  SVLHTNTLINMYTKFGRVKPARYLFDKMPVRNEVSWNTMMSGIVRVGLYLEGMEFFQKMC 151

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAAL-VHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
              + P++F ++S++ AC    S+    + VHG   K GL   +YV  +++ +Y    + 
Sbjct: 152 DLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGL- 210

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +  +R VF +M  +N VSWT+L+ GY+  G     + ++K M  EGVE N  S S+ + +
Sbjct: 211 VSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISS 270

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C      S G+ I   VIK G  S L V NS++ M+     +  AN  F++++E+D I+W
Sbjct: 271 CGLLKDESLGRQIIGQVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQISERDTISW 330

Query: 284 NTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N+I+A Y ++G   E   +F+ M+      N  T +++++    +     G+ +H  +V+
Sbjct: 331 NSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVK 390

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
            G D  + + N L+ MYA  G   ++  +F +M  +DL++W S+M  +   G   +A+ +
Sbjct: 391 MGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFVNDGRSLDALGI 450

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR 462
              M+++G   + + F + L AC      D+G      +    +  N+ I   +V + G+
Sbjct: 451 LCSMIRTGKSVNYVTFTSALAACFSPEFFDKGRILHGLVVVSGLFDNQIIGNALVSMYGK 510

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNMMGTYI 520
            G +  +  ++  MP + D   W  L+G   E+  P+  L     LRV  +  N +    
Sbjct: 511 IGGMSTSRRVLLQMP-RRDVVAWNALIGGYAENEDPDKALAAFQTLRVEGVSANYITVVS 569

Query: 521 ILS 523
           +LS
Sbjct: 570 VLS 572



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 170/363 (46%), Gaps = 10/363 (2%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I+   L+  Y   G +  +R +  +MP RDVV+W  +I GY      ++A   F  +   
Sbjct: 499 IIGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGGYAENEDPDKALAAFQTLRVE 558

Query: 107 EVNPNAFTLSSVLKACKGMKS-LSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
            V+ N  T+ SVL AC      L     +H   +  G E   +V+NSL+ +YA C   + 
Sbjct: 559 GVSANYITVVSVLSACLVPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCG-DLS 617

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
           +++ +FN +  ++ ++W  ++   AH G+G   L +  +M   G+ ++ +SFS  + A A
Sbjct: 618 SSQDLFNGLDNRSIITWNAILAANAHHGHGEEVLKLVSKMRSFGLSLDQFSFSEGLSAAA 677

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               +  G+ +H   +K GF  +  + N+  DMY +   + +  +       + L +WN 
Sbjct: 678 KLAVLEEGQQLHGLAVKLGFELDCFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNI 737

Query: 286 IIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR- 343
           +I+   + G   E    F +M      P   TF S++ AC+    +  G   +  I +  
Sbjct: 738 LISALGRHGYFEEVCETFHEMLEMGIKPGHVTFVSLLTACSHGGLVDQGLAYYDMIAKDF 797

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR--DLVTWTSMMIGYGAH---GHGKE 398
           GL+  +     +ID+  + G +++++   S+M  +  DLV W S++     H     G++
Sbjct: 798 GLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLV-WRSLLASCKIHRDLDRGRK 856

Query: 399 AIE 401
           A E
Sbjct: 857 AAE 859



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 87/174 (50%), Gaps = 7/174 (4%)

Query: 307 SERFSP--NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGN 364
           S+ ++P  +CF  T      + +   + G+ +HA  V+  +  ++   N LI+MY K G 
Sbjct: 53  SDHWNPELSCFDQTGF----SQITRETTGRALHALCVKGLVRLSVLHTNTLINMYTKFGR 108

Query: 365 ISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTA 424
           +  ++ +F +M  R+ V+W +MM G    G   E +E F +M   G++P   V  +++TA
Sbjct: 109 VKPARYLFDKMPVRNEVSWNTMMSGIVRVGLYLEGMEFFQKMCDLGIKPSSFVIASLVTA 168

Query: 425 CSHAG-LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMP 477
           C  +G +  EG++    +    +  +  +   ++ L G  G V  + ++ + MP
Sbjct: 169 CGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMP 222


>gi|255542116|ref|XP_002512122.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549302|gb|EEF50791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 800

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 198/535 (37%), Positives = 296/535 (55%), Gaps = 7/535 (1%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           +GP   A  L+ S  D+     A  +F  M  R + SWT MI+ Y       QA  VFVE
Sbjct: 234 RGPLNDALVLMYSRCDD--FSSAERIFSNMFNRSIASWTAMISCYNRSRWFKQALQVFVE 291

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M+  +V PNA T+ +VL +C G   L     VH  A+K        +  +L++ YA    
Sbjct: 292 MLEFKVAPNAVTIMAVLSSCAGFNLLREGKSVHCYAVKHIDLDDDSLGPALIEYYAQFG- 350

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
            +     V + +  +N +SW  LI+ YA  G     LG+F +M  +G   + +S S ++ 
Sbjct: 351 KLSYCEKVLHTIGKRNIISWNMLISVYASQGLFKEALGIFVQMQRQGQIPDSFSLSSSIS 410

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           ACA+ G +  G  IH   IK        V NS++DMY +   +  A   FD +  K ++ 
Sbjct: 411 ACANVGLLWLGHQIHGYAIKRHILDEF-VQNSLIDMYSKCGHVDLAYLIFDRIQSKSVVA 469

Query: 283 WNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           WN++I G+ + G+S E + +F +M       N  TF + I AC+ +  L  G+ +H  ++
Sbjct: 470 WNSMICGFSQIGNSLEAIRLFDQMYLNCLDMNEVTFLTAIQACSHMGHLEKGKWLHHKLI 529

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
             G+  +L +  ALIDMYAKCG++  + ++F  MS+R +V+W++M+ G G HG    AI 
Sbjct: 530 AYGVKKDLFIDTALIDMYAKCGDLRIAHRVFDSMSERSVVSWSAMIGGCGMHGDIDAAIS 589

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461
           LF EM++  ++P+ I FM +L+ACSH+G V+EG  YF SM ++ V PN E + C+VDLL 
Sbjct: 590 LFAEMIQREMKPNDITFMNILSACSHSGYVEEGKFYFNSMKNFEVEPNLEHFACMVDLLS 649

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
           RAG + EAY +I SMPF  + S+WG LL  C+ H+  ++ +     +LD++ +  G Y +
Sbjct: 650 RAGDLDEAYRIINSMPFPAEASIWGALLNGCRIHQRMDMIRNIERDLLDMRTDDTGYYTL 709

Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQ 576
           LSNIYA EG W+   K R  M+G+G KK  G S IE+  KV  F A D   SH Q
Sbjct: 710 LSNIYAEEGNWDVSRKVRSAMKGIGLKKVPGYSTIELDKKVYRFGAGDV--SHWQ 762



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 138/493 (27%), Positives = 253/493 (51%), Gaps = 10/493 (2%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++ T+L+  Y D G +  A+ +FD M  RD+VSW+ +I+ Y      ++   +F  +V  
Sbjct: 135 VVETSLLGMYGDLGCLSNAKKVFDNMTTRDLVSWSSIISCYVDNGESSEGLEMFRLLVSQ 194

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
           +V  ++ T+ S+  AC  +  L  A  VHG  I++ +E    + ++L+ +Y+  C    +
Sbjct: 195 DVELDSVTMLSIAGACGELGFLRLAKSVHGCIIRQRIETRGPLNDALVLMYSR-CDDFSS 253

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           A  +F++M  ++  SWT +I+ Y  S      L VF EML   V  N  +    + +CA 
Sbjct: 254 AERIFSNMFNRSIASWTAMISCYNRSRWFKQALQVFVEMLEFKVAPNAVTIMAVLSSCAG 313

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
              +  GK +H   +KH    +  +  ++++ Y +F  LS   +    + ++++I+WN +
Sbjct: 314 FNLLREGKSVHCYAVKHIDLDDDSLGPALIEYYAQFGKLSYCEKVLHTIGKRNIISWNML 373

Query: 287 IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I+ Y   G   E L +F +M+ +   P+ F+ +S I+ACA +  L  G Q+H   ++R +
Sbjct: 374 ISVYASQGLFKEALGIFVQMQRQGQIPDSFSLSSSISACANVGLLWLGHQIHGYAIKRHI 433

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
                + N+LIDMY+KCG++  +  IF  +  + +V W SM+ G+   G+  EAI LFD+
Sbjct: 434 LDEF-VQNSLIDMYSKCGHVDLAYLIFDRIQSKSVVAWNSMICGFSQIGNSLEAIRLFDQ 492

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           M  + +  + + F+  + ACSH G +++G      +  Y V  +  I   ++D+  + G 
Sbjct: 493 MYLNCLDMNEVTFLTAIQACSHMGHLEKGKWLHHKLIAYGVKKDLFIDTALIDMYAKCGD 552

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN--LGKLAALRVLDLKPNMMGTYIILS 523
           ++ A+ +  SM  +   S W  ++G C  H   +  +   A +   ++KPN +    ILS
Sbjct: 553 LRIAHRVFDSMSERSVVS-WSAMIGGCGMHGDIDAAISLFAEMIQREMKPNDITFMNILS 611

Query: 524 NI----YAAEGKW 532
                 Y  EGK+
Sbjct: 612 ACSHSGYVEEGKF 624



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 127/468 (27%), Positives = 243/468 (51%), Gaps = 18/468 (3%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108
           +T LI+SY   G ++ ++ +F+     D   W V+I  +   N   +A +++ +M+  ++
Sbjct: 36  STKLIESYSQIGCLQSSKLVFETFQNPDSFMWAVLIKCHVWSNFCGEAISLYNKMIYKQI 95

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNA 167
             + F  SSVL+AC G  +L     VHG  IK GL+    VE SL+ +Y    C+S  NA
Sbjct: 96  PISDFIFSSVLRACAGFGNLDVGEEVHGRIIKYGLDVDHVVETSLLGMYGDLGCLS--NA 153

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           + VF++M  ++ VSW+++I+ Y  +G    GL +F+ ++ + VE++  +      AC   
Sbjct: 154 KKVFDNMTTRDLVSWSSIISCYVDNGESSEGLEMFRLLVSQDVELDSVTMLSIAGACGEL 213

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
           G++   K +H  +I+    +  P+ ++++ MY R D  S A + F  M  + + +W  +I
Sbjct: 214 GFLRLAKSVHGCIIRQRIETRGPLNDALVLMYSRCDDFSSAERIFSNMFNRSIASWTAMI 273

Query: 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-GL 345
           + Y +S    + L +F +M   + +PN  T  +++++CA    L  G+ VH   V+   L
Sbjct: 274 SCYNRSRWFKQALQVFVEMLEFKVAPNAVTIMAVLSSCAGFNLLREGKSVHCYAVKHIDL 333

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           D + +L  ALI+ YA+ G +S  +K+   +  R++++W  ++  Y + G  KEA+ +F +
Sbjct: 334 DDD-SLGPALIEYYAQFGKLSYCEKVLHTIGKRNIISWNMLISVYASQGLFKEALGIFVQ 392

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP---NKEIYGCVVDLLGR 462
           M + G  PD     + ++AC++ GL+  G      ++ Y +     ++ +   ++D+  +
Sbjct: 393 MQRQGQIPDSFSLSSSISACANVGLLWLG----HQIHGYAIKRHILDEFVQNSLIDMYSK 448

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD 510
            G V  AY +   +  K     W  ++  C   ++ N   L A+R+ D
Sbjct: 449 CGHVDLAYLIFDRIQSKS-VVAWNSMI--CGFSQIGN--SLEAIRLFD 491



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 101/330 (30%), Positives = 181/330 (54%), Gaps = 9/330 (2%)

Query: 118 VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK 177
           + ++C  ++ L+   L+H   +  GL         L++ Y+     + +++LVF   +  
Sbjct: 7   LFRSCTSLRPLT---LLHSHLLVTGLHHDPQASTKLIESYSQIG-CLQSSKLVFETFQNP 62

Query: 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIH 237
           +   W  LI  +  S      + ++ +M+ + + ++ + FS  +RACA  G +  G+ +H
Sbjct: 63  DSFMWAVLIKCHVWSNFCGEAISLYNKMIYKQIPISDFIFSSVLRACAGFGNLDVGEEVH 122

Query: 238 AAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SS 296
             +IK+G   +  V  S+L MY    CLS+A + FD MT +DL++W++II+ Y  +G SS
Sbjct: 123 GRIIKYGLDVDHVVETSLLGMYGDLGCLSNAKKVFDNMTTRDLVSWSSIISCYVDNGESS 182

Query: 297 ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALI 356
           E L MF  + S+    +  T  SI  AC  L  L   + VH  I+R+ ++    L +AL+
Sbjct: 183 EGLEMFRLLVSQDVELDSVTMLSIAGACGELGFLRLAKSVHGCIIRQRIETRGPLNDALV 242

Query: 357 DMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI 416
            MY++C + S +++IFS M +R + +WT+M+  Y      K+A+++F EM++  V P+ +
Sbjct: 243 LMYSRCDDFSSAERIFSNMFNRSIASWTAMISCYNRSRWFKQALQVFVEMLEFKVAPNAV 302

Query: 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNV 446
             MAVL++C+   L+ EG    KS++ Y V
Sbjct: 303 TIMAVLSSCAGFNLLREG----KSVHCYAV 328


>gi|326507410|dbj|BAK03098.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 698

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 200/553 (36%), Positives = 306/553 (55%), Gaps = 24/553 (4%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108
           AT L+  Y   G   +A  LFD MPER+ VSW  ++AGY        A  +FVEM R   
Sbjct: 139 ATALLHMYAKCGRTRDACRLFDGMPERNTVSWNALVAGYVESGKVAPAVQLFVEMEREGF 198

Query: 109 NPNAFTLSSVL-----KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
            P+  T +++L       C  M  L      HG  +K G    + V N+ +  Y+ C  +
Sbjct: 199 LPDEATFAALLTVVNDSTCFLMHQL------HGKIVKYGSALGLIVLNAAITAYSQCG-A 251

Query: 164 MDNARLVFNDMKWKND-VSWTTLITGYAHSGNGYGGLGVFKEML-LEGVEMNPYSFSIAV 221
           + N+R +F+++  ++D +SW  ++  YA  G  +  +  F  M+   GV+ + YSF+  +
Sbjct: 252 LANSRRIFDEIGDRSDLISWNAMLGAYATHGMEHEAMRFFASMMRASGVQPDMYSFTSII 311

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRF--DCL-SDANQYFDEMTEK 278
            ACA       G +IH  V K+GF     V N+++ MY RF  +C+  DA + FD +  K
Sbjct: 312 SACAEHR-DHGGTVIHGLVSKNGFEGVTHVCNALIAMYTRFSENCMMEDAYKCFDSLLLK 370

Query: 279 DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
           D ++WN+++ GY + G S++ L  F  M+SE  + + + F++ + +C+ LA L  G+Q+H
Sbjct: 371 DTVSWNSMLTGYSQHGLSADALRFFRCMQSENITTDEYAFSAALRSCSDLALLRLGRQIH 430

Query: 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
             ++R G   N  ++++LI MY+K G + D+ K F E      V W SMM GY  HG  +
Sbjct: 431 GLVIRSGFASNNFVSSSLIFMYSKSGILDDAMKSFEEADKSSSVPWNSMMFGYAQHGKAQ 490

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCV 456
               LF++M++  V  D I F+ ++TACSHAGLVDEG +   +M   Y +    E Y C 
Sbjct: 491 AVRSLFNQMLELKVPLDHITFVGLITACSHAGLVDEGSEILNTMESRYGIPLRMEHYACG 550

Query: 457 VDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMM 516
           +DL GRAG++ +A ELI SMPF+PD  VW  LLGAC+ H    L    A  +L+ +P   
Sbjct: 551 IDLYGRAGQLDKAKELIDSMPFEPDAMVWMTLLGACRVHGNMELASDVASHLLEAEPRQH 610

Query: 517 GTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQ 576
            TY++LSN+Y+  G W + A  +K M+  G  K  G SWIEV+++V  F A D  GSH +
Sbjct: 611 STYVLLSNMYSGLGMWSDRAIVQKEMKNKGLSKVPGWSWIEVKNEVHSFNAED--GSHPR 668

Query: 577 Y--VYGVLEMLIR 587
              +Y +L +L+ 
Sbjct: 669 MDEIYEMLSLLLH 681



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 126/454 (27%), Positives = 214/454 (47%), Gaps = 15/454 (3%)

Query: 62  IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121
           +  AR LFDE+P  D  SW  ++A + S   H  A  +   M    +  N F L S L++
Sbjct: 51  LAAARRLFDEIPRLDAASWNSLLAAHVSIGAHPAACRLLRAMHERGLAANTFALGSALRS 110

Query: 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS 181
              M   +    +H +A+K GL  +++   +L+ +YA C  + D  RL F+ M  +N VS
Sbjct: 111 AAAMGCSALGTQLHSLAVKAGLADNVFSATALLHMYAKCGRTRDACRL-FDGMPERNTVS 169

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           W  L+ GY  SG     + +F EM  EG   +  +F+ A+    +         +H  ++
Sbjct: 170 WNALVAGYVESGKVAPAVQLFVEMEREGFLPDEATFA-ALLTVVNDSTCFLMHQLHGKIV 228

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLITWNTIIAGYEKSG-SSECL 299
           K+G    L V+N+ +  Y +   L+++ + FDE+ ++ DLI+WN ++  Y   G   E +
Sbjct: 229 KYGSALGLIVLNAAITAYSQCGALANSRRIFDEIGDRSDLISWNAMLGAYATHGMEHEAM 288

Query: 300 NMF-SKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDM 358
             F S M++    P+ ++FTSII+ACA       G  +H  + + G +G   + NALI M
Sbjct: 289 RFFASMMRASGVQPDMYSFTSIISACAEHRD-HGGTVIHGLVSKNGFEGVTHVCNALIAM 347

Query: 359 YAKCGN---ISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           Y +      + D+ K F  +  +D V+W SM+ GY  HG   +A+  F  M    +  D 
Sbjct: 348 YTRFSENCMMEDAYKCFDSLLLKDTVSWNSMLTGYSQHGLSADALRFFRCMQSENITTDE 407

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKS 475
             F A L +CS   L+  G +    +       N  +   ++ +  ++G + +A +  + 
Sbjct: 408 YAFSAALRSCSDLALLRLGRQIHGLVIRSGFASNNFVSSSLIFMYSKSGILDDAMKSFEE 467

Query: 476 MPFKPDESVWGPLLGACKEHRLPNLGKLAALRVL 509
              K     W  ++    +H     GK  A+R L
Sbjct: 468 AD-KSSSVPWNSMMFGYAQH-----GKAQAVRSL 495



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 188/381 (49%), Gaps = 18/381 (4%)

Query: 127 SLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLI 186
           +++  A  H   +K G+  S    N L+  Y+     +  AR +F+++   +  SW +L+
Sbjct: 15  TIAAVAKSHATLLKSGVT-SPTPWNQLLTAYSVSSPGLAAARRLFDEIPRLDAASWNSLL 73

Query: 187 TGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFG 246
             +   G       + + M   G+  N ++   A+R+ A+ G  + G  +H+  +K G  
Sbjct: 74  AAHVSIGAHPAACRLLRAMHERGLAANTFALGSALRSAAAMGCSALGTQLHSLAVKAGLA 133

Query: 247 SNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKM 305
            N+    ++L MY +     DA + FD M E++ ++WN ++AGY +SG  +  + +F +M
Sbjct: 134 DNVFSATALLHMYAKCGRTRDACRLFDGMPERNTVSWNALVAGYVESGKVAPAVQLFVEM 193

Query: 306 KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNI 365
           + E F P+  TF +++             Q+H  IV+ G    L + NA I  Y++CG +
Sbjct: 194 EREGFLPDEATFAALLTVVNDSTCF-LMHQLHGKIVKYGSALGLIVLNAAITAYSQCGAL 252

Query: 366 SDSQKIFSEMSDR-DLVTWTSMMIGYGAHGHGKEAIELFDEMVK-SGVRPDRIVFMAVLT 423
           ++S++IF E+ DR DL++W +M+  Y  HG   EA+  F  M++ SGV+PD   F ++++
Sbjct: 253 ANSRRIFDEIGDRSDLISWNAMLGAYATHGMEHEAMRFFASMMRASGVQPDMYSFTSIIS 312

Query: 424 ACS----HAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR---VKEAYELIKSM 476
           AC+    H G V  GL     ++         +   ++ +  R      +++AY+   S+
Sbjct: 313 ACAEHRDHGGTVIHGL-----VSKNGFEGVTHVCNALIAMYTRFSENCMMEDAYKCFDSL 367

Query: 477 PFKPDESVWGPLLGACKEHRL 497
             K D   W  +L    +H L
Sbjct: 368 LLK-DTVSWNSMLTGYSQHGL 387



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 137/298 (45%), Gaps = 19/298 (6%)

Query: 237 HAAVIKHGFGSNLPVMNSILDMY-CRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS 295
           HA ++K G  S  P  N +L  Y      L+ A + FDE+   D  +WN+++A +   G+
Sbjct: 23  HATLLKSGVTSPTP-WNQLLTAYSVSSPGLAAARRLFDEIPRLDAASWNSLLAAHVSIGA 81

Query: 296 SECLNMFSKMKSER-FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
                   +   ER  + N F   S + + A +   + G Q+H+  V+ GL  N+  A A
Sbjct: 82  HPAACRLLRAMHERGLAANTFALGSALRSAAAMGCSALGTQLHSLAVKAGLADNVFSATA 141

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
           L+ MYAKCG   D+ ++F  M +R+ V+W +++ GY   G    A++LF EM + G  PD
Sbjct: 142 LLHMYAKCGRTRDACRLFDGMPERNTVSWNALVAGYVESGKVAPAVQLFVEMEREGFLPD 201

Query: 415 RIVFMAVLTACSHA------GLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKE 468
              F A+LT  + +       L  + +KY  ++    +N     Y        + G +  
Sbjct: 202 EATFAALLTVVNDSTCFLMHQLHGKIVKYGSALGLIVLNAAITAY-------SQCGALAN 254

Query: 469 AYELIKSMPFKPDESVWGPLLGACKEHRLPNLGK---LAALRVLDLKPNMMGTYIILS 523
           +  +   +  + D   W  +LGA   H + +       + +R   ++P+M     I+S
Sbjct: 255 SRRIFDEIGDRSDLISWNAMLGAYATHGMEHEAMRFFASMMRASGVQPDMYSFTSIIS 312



 Score = 38.9 bits (89), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 17/158 (10%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + ++++LI  Y   G++++A   F+E  +   V W  M+ GY          ++F +M+ 
Sbjct: 442 NFVSSSLIFMYSKSGILDDAMKSFEEADKSSSVPWNSMMFGYAQHGKAQAVRSLFNQMLE 501

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALV-HGMAIKEGLEGSIYVENSLMDVYATCCI-- 162
            +V  +  T   ++ AC      S+A LV  G  I   +E S Y     M+ YA C I  
Sbjct: 502 LKVPLDHITFVGLITAC------SHAGLVDEGSEILNTME-SRYGIPLRMEHYA-CGIDL 553

Query: 163 -----SMDNARLVFNDMKWKND-VSWTTLITGYAHSGN 194
                 +D A+ + + M ++ D + W TL+      GN
Sbjct: 554 YGRAGQLDKAKELIDSMPFEPDAMVWMTLLGACRVHGN 591


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 181/504 (35%), Positives = 291/504 (57%), Gaps = 5/504 (0%)

Query: 109 NPNAFTL-SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           +P+A+   +S+L++C    SL     +HG  +  GL     +   L+D+YA C   + +A
Sbjct: 58  SPHAYHHHTSILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACG-QVGHA 116

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R +F+ M  +N   W  LI  YA  G     + +++ M+  GVE + +++ + ++ACA+ 
Sbjct: 117 RRLFDGMPKRNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAAL 176

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  G+ +H  V    +G ++ V   ++DMY +  C+ DA   FD +  +D + WN++I
Sbjct: 177 LDLETGREVHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMI 236

Query: 288 AGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           A Y ++G   E L +   M +    P   T  S ++A A  AAL  G+++H    RRG  
Sbjct: 237 AAYGQNGRPMEALALCRDMAANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRRGFG 296

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
               L  +L+DMYAK G +  ++ +F ++  R+LV+W +M+ GYG HGH  EA+ LF++M
Sbjct: 297 LQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHADEALALFNKM 356

Query: 407 V-KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAG 464
              + V PD I F+ VL+AC+H G+V+E  ++F  M N Y++ P  + Y CV+D+LG  G
Sbjct: 357 KGDAQVTPDNITFVGVLSACNHGGMVEEAKEFFYLMVNAYSIKPTVQHYTCVIDVLGHTG 416

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           R +EAY+LIK M  +PD  +WG LL  CK H+   LG+LA  ++++L+P   G Y+ LSN
Sbjct: 417 RFEEAYDLIKGMSIEPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVHLSN 476

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
           IYA  GKWE+ A+ RK+M   G KK +  SWIE++ K  GF+  D     +  +YG LE 
Sbjct: 477 IYAQSGKWEKAARVRKLMTNRGLKKILACSWIELKGKTHGFLVGDASHPRSDEIYGELER 536

Query: 585 LIRHMNETAYEPDIDCLIHDLEGE 608
           L   M++  Y PDI  + H+++ +
Sbjct: 537 LEGLMSDAGYVPDIIPVFHNVDDD 560



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 173/367 (47%), Gaps = 30/367 (8%)

Query: 44  GP-SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           GP ++L+T L+  Y   G +  AR LFD MP+R+V  W V+I  Y        A  ++  
Sbjct: 94  GPDTVLSTKLVDLYAACGQVGHARRLFDGMPKRNVFLWNVLIRAYAREGPREAAVRLYRG 153

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-C 161
           MV + V P+ FT   VLKAC  +  L     VH           ++V   ++D+YA C C
Sbjct: 154 MVEHGVEPDNFTYPLVLKACAALLDLETGREVHQRVSGTRWGQDVFVCAGVVDMYAKCGC 213

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
           +  D+AR VF+ +  ++ V W ++I  Y  +G     L + ++M   G+     +   AV
Sbjct: 214 V--DDARAVFDGIAVRDAVVWNSMIAAYGQNGRPMEALALCRDMAANGIGPTIATLVSAV 271

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
            A A    +  G+ +H    + GFG    +  S++DMY +   +  A   F+++ +++L+
Sbjct: 272 SAAADAAALPRGRELHGFGWRRGFGLQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELV 331

Query: 282 TWNTIIAGYEKSG-SSECLNMFSKMKSE-RFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           +WN +I GY   G + E L +F+KMK + + +P+  TF  +++AC            H G
Sbjct: 332 SWNAMICGYGMHGHADEALALFNKMKGDAQVTPDNITFVGVLSACN-----------HGG 380

Query: 340 IVRRGLDGNLALANA------------LIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSM 386
           +V    +    + NA            +ID+    G   ++  +   MS + D   W ++
Sbjct: 381 MVEEAKEFFYLMVNAYSIKPTVQHYTCVIDVLGHTGRFEEAYDLIKGMSIEPDSGIWGAL 440

Query: 387 MIGYGAH 393
           + G   H
Sbjct: 441 LNGCKIH 447


>gi|116312013|emb|CAJ86370.1| OSIGBa0117N13.14 [Oryza sativa Indica Group]
 gi|116312056|emb|CAJ86420.1| H0303G06.9 [Oryza sativa Indica Group]
          Length = 559

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 180/512 (35%), Positives = 300/512 (58%), Gaps = 4/512 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L+T LI  Y   G +  AR +FD MP R VVSWT M++GY       +A  +F  M  + 
Sbjct: 49  LSTKLIIFYARFGDVAAARKMFDGMPHRSVVSWTAMVSGYARNGRPREALELFALMRASG 108

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
             PN FT  S   AC G     +   VH  A K    G ++V+++LMD++  C  S+++A
Sbjct: 109 ARPNQFTYGSAASACAGAGCARSGEQVHACAAKGRFAGDMFVQSALMDMHLRCG-SVEDA 167

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R +F +M  K+ VSW  LI G+   G+    LG+F  ML E +  + Y+   A++AC   
Sbjct: 168 RQLFAEMGKKDVVSWNALIRGFVERGHDGDALGLFSSMLKEAMIPDHYTLGSALKACGIV 227

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
           G     +LIH+ +IK G+     V+ S+++ Y +   +S A   +D ++E DL++   +I
Sbjct: 228 GVAVNVELIHSCIIKLGYWDEKVVIGSLINSYAKCRSMSSARVIYDSISEPDLVSSTALI 287

Query: 288 AGY--EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           +GY  +++ S + + +F K+  +    +    +S++  CA++A+   G Q+HA + ++  
Sbjct: 288 SGYTMDRNYSEDAMELFCKIHRKGLWIDGVLLSSVLCLCASVASARFGTQIHAYMCKKQS 347

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
            G++AL NAL+DMYAK G  SD+++ F EM  R++++WTS++   G +G G++A+ LF+ 
Sbjct: 348 MGDIALDNALVDMYAKAGEFSDAKRAFDEMPYRNVISWTSLITACGRNGSGEDAVTLFNR 407

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS-MNDYNVNPNKEIYGCVVDLLGRAG 464
           MV+ GVRP+ + F+++L+AC H GL ++G++YF S M+ Y ++P  E Y   +DLL R G
Sbjct: 408 MVEDGVRPNDVTFLSLLSACGHCGLTNKGMEYFTSMMSRYGIDPRAEHYSSAIDLLARGG 467

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           ++++A++L++    KP+ S+ G +LGACK H    LG+ AA  +  + P     Y +L+N
Sbjct: 468 QLEDAWKLVQKTNLKPNSSMLGAMLGACKLHGNMLLGETAAKNLFSIDPGSSVNYAVLAN 527

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWI 556
           +YA    WE+  + R+++      KEVG S I
Sbjct: 528 MYAECSLWEDAQRTREVIDETTDGKEVGFSVI 559



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 181/349 (51%), Gaps = 4/349 (1%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   + + L+  +   G +E+AR LF EM ++DVVSW  +I G+        A  +F  M
Sbjct: 146 GDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVVSWNALIRGFVERGHDGDALGLFSSM 205

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           ++  + P+ +TL S LKAC  +    N  L+H   IK G      V  SL++ YA  C S
Sbjct: 206 LKEAMIPDHYTLGSALKACGIVGVAVNVELIHSCIIKLGYWDEKVVIGSLINSYAK-CRS 264

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGN-GYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
           M +AR++++ +   + VS T LI+GY    N     + +F ++  +G+ ++    S  + 
Sbjct: 265 MSSARVIYDSISEPDLVSSTALISGYTMDRNYSEDAMELFCKIHRKGLWIDGVLLSSVLC 324

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
            CAS     FG  IHA + K     ++ + N+++DMY +    SDA + FDEM  +++I+
Sbjct: 325 LCASVASARFGTQIHAYMCKKQSMGDIALDNALVDMYAKAGEFSDAKRAFDEMPYRNVIS 384

Query: 283 WNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           W ++I    ++GS E  + +F++M  +   PN  TF S+++AC      + G +    ++
Sbjct: 385 WTSLITACGRNGSGEDAVTLFNRMVEDGVRPNDVTFLSLLSACGHCGLTNKGMEYFTSMM 444

Query: 342 RR-GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIG 389
            R G+D      ++ ID+ A+ G + D+ K+  + + +   +    M+G
Sbjct: 445 SRYGIDPRAEHYSSAIDLLARGGQLEDAWKLVQKTNLKPNSSMLGAMLG 493



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 124/227 (54%), Gaps = 2/227 (0%)

Query: 206 LLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGS-NLPVMNSILDMYCRFDC 264
           LL G +     +S  ++ C S+     GK +H  V        +L +   ++  Y RF  
Sbjct: 3   LLMGAKPTAPFYSSLLQCCISSCAFRQGKSVHGRVAAASASPPDLHLSTKLIIFYARFGD 62

Query: 265 LSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAA 323
           ++ A + FD M  + +++W  +++GY ++G   E L +F+ M++    PN FT+ S  +A
Sbjct: 63  VAAARKMFDGMPHRSVVSWTAMVSGYARNGRPREALELFALMRASGARPNQFTYGSAASA 122

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTW 383
           CA       G+QVHA   +    G++ + +AL+DM+ +CG++ D++++F+EM  +D+V+W
Sbjct: 123 CAGAGCARSGEQVHACAAKGRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVVSW 182

Query: 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
            +++ G+   GH  +A+ LF  M+K  + PD     + L AC   G+
Sbjct: 183 NALIRGFVERGHDGDALGLFSSMLKEAMIPDHYTLGSALKACGIVGV 229



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 90/179 (50%), Gaps = 2/179 (1%)

Query: 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG-NLALANALIDMYAKCGNISDSQK 370
           P    ++S++  C +  A   G+ VH  +        +L L+  LI  YA+ G+++ ++K
Sbjct: 9   PTAPFYSSLLQCCISSCAFRQGKSVHGRVAAASASPPDLHLSTKLIIFYARFGDVAAARK 68

Query: 371 IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           +F  M  R +V+WT+M+ GY  +G  +EA+ELF  M  SG RP++  + +  +AC+ AG 
Sbjct: 69  MFDGMPHRSVVSWTAMVSGYARNGRPREALELFALMRASGARPNQFTYGSAASACAGAGC 128

Query: 431 VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
              G +            +  +   ++D+  R G V++A +L   M  K D   W  L+
Sbjct: 129 ARSGEQVHACAAKGRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMG-KKDVVSWNALI 186


>gi|449458231|ref|XP_004146851.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Cucumis sativus]
 gi|449522932|ref|XP_004168479.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Cucumis sativus]
          Length = 705

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 190/601 (31%), Positives = 312/601 (51%), Gaps = 80/601 (13%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMP---ERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           + ++  L+  Y   GL+ +AR +F   P     + + W  +I          +A  ++ +
Sbjct: 70  AFVSARLVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSIIRANVYHGYCIEALQLYGK 129

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M    V  + FT   +L+A   + + +    +H   ++ G +  ++V N L+ +YA    
Sbjct: 130 MRNYGVLGDGFTFPLLLRASSNLGAFNMCKNLHCHVVQFGFQNHLHVGNELIGMYAK-LE 188

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFS---- 218
            MD+AR VF+ M+ K+ VSW T+++GYA++ +  G   +F +M LEGVE NP +++    
Sbjct: 189 RMDDARKVFDKMRIKSVVSWNTMVSGYAYNYDVNGASRMFHQMELEGVEPNPVTWTSLLS 248

Query: 219 -------------------------------IAVRACASTGWVSFGKLIHAAVIKHGFGS 247
                                          + +  CA    ++ G++IH  ++K GF  
Sbjct: 249 SHARCGHLEETMVLFCKMRMKGVGPTAEMLAVVLSVCADLATLNSGQMIHGYMVKGGFND 308

Query: 248 NLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG------------- 294
            L   N+++ +Y +   + DA + F EM  K+L++WN +I+ + +SG             
Sbjct: 309 YLFAKNALITLYGKGGGVGDAEKLFHEMKVKNLVSWNALISSFAESGVYDKALELLSQLE 368

Query: 295 ---------------------------SSECLNMFSKMKSERFSPNCFTFTSIIAACATL 327
                                        E L +F KM+      N  T  S+++ CA L
Sbjct: 369 KMEAYPEMKPNVITWSAIICGFASKGLGEESLEVFRKMQLANVKANSVTIASVLSICAML 428

Query: 328 AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMM 387
           AAL+ G+++H  ++R  +D N+ + N LI+MY KCG+      +F ++ +RD ++W SM+
Sbjct: 429 AALNLGREMHGHVIRARMDDNVLVGNGLINMYTKCGSFKPGFMVFEKLENRDSISWNSMI 488

Query: 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNV 446
            GYG HG GK+A+  F+ M+KSG RPD + F+A L+ACSHAGLV EG   F  M  ++ +
Sbjct: 489 AGYGTHGLGKDALATFNHMIKSGYRPDGVTFIAALSACSHAGLVAEGHWLFSQMRQNFKI 548

Query: 447 NPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAAL 506
            P  E Y C+VDLLGRAG V+EA  +IK MP +P+  +W  LL +C+ H+  +L + AA 
Sbjct: 549 EPEIEHYACMVDLLGRAGLVEEASNIIKGMPMEPNAYIWSSLLNSCRMHKDTDLAEEAAA 608

Query: 507 RVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFI 566
           ++ +L   + G++++LSNI+AA  +WE+ A+ R   R  G KK  G SWIEV+ KV  F 
Sbjct: 609 KISNLNSKITGSHMLLSNIFAASCRWEDSARVRISARAKGLKKVPGWSWIEVKKKVYMFK 668

Query: 567 A 567
           A
Sbjct: 669 A 669



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 111/417 (26%), Positives = 204/417 (48%), Gaps = 59/417 (14%)

Query: 89  SFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIY 148
           S N H+Q    F  +  +E  P+ F    +L+ C G++   ++  VH   +  G   S +
Sbjct: 21  SINFHSQ----FSSITYDEDLPDFF--DHLLRQCNGIQ---HSKQVHSATVVTGAYCSAF 71

Query: 149 VENSLMDVYATCCISMDNARLVFNDMK---WKNDVSWTTLITGYAHSGNGYGGLGVFKEM 205
           V   L+ +Y+   +  D AR VF       + N + W ++I    + G     L ++ +M
Sbjct: 72  VSARLVSIYSRYGLVSD-ARKVFGSAPFECYSNFLLWNSIIRANVYHGYCIEALQLYGKM 130

Query: 206 LLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCL 265
              GV  + ++F + +RA ++ G  +  K +H  V++ GF ++L V N ++ MY + + +
Sbjct: 131 RNYGVLGDGFTFPLLLRASSNLGAFNMCKNLHCHVVQFGFQNHLHVGNELIGMYAKLERM 190

Query: 266 SDANQYFDEMTEKDLITWNTIIAG----YEKSGSSECLNMFSKMKSERFSPNCFTFTSII 321
            DA + FD+M  K +++WNT+++G    Y+ +G+S    MF +M+ E   PN  T+TS++
Sbjct: 191 DDARKVFDKMRIKSVVSWNTMVSGYAYNYDVNGASR---MFHQMELEGVEPNPVTWTSLL 247

Query: 322 AA-----------------------------------CATLAALSCGQQVHAGIVRRGLD 346
           ++                                   CA LA L+ GQ +H  +V+ G +
Sbjct: 248 SSHARCGHLEETMVLFCKMRMKGVGPTAEMLAVVLSVCADLATLNSGQMIHGYMVKGGFN 307

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
             L   NALI +Y K G + D++K+F EM  ++LV+W +++  +   G   +A+EL  ++
Sbjct: 308 DYLFAKNALITLYGKGGGVGDAEKLFHEMKVKNLVSWNALISSFAESGVYDKALELLSQL 367

Query: 407 VK----SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL 459
            K      ++P+ I + A++   +  GL +E L+ F+ M   NV  N      V+ +
Sbjct: 368 EKMEAYPEMKPNVITWSAIICGFASKGLGEESLEVFRKMQLANVKANSVTIASVLSI 424


>gi|449521571|ref|XP_004167803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 817

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 188/558 (33%), Positives = 315/558 (56%), Gaps = 12/558 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + ++ I  Y + G +E A+ +FD   ER+   W  MI+ +   N   +   +F + V +E
Sbjct: 249 VVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESE 308

Query: 108 -VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
               +  TL S + A   ++    A  +H   IK      + V N+L+ +Y+ C  S+D 
Sbjct: 309 DAAIDEVTLLSAISAASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCN-SIDT 367

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           +  +F++M  K+ VSW T+I+ +  +G     L +F EM  + + ++  + +  + A + 
Sbjct: 368 SFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASD 427

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNS-ILDMYCRFDCLSDANQYFDEM--TEKDLITW 283
                 GK  H  ++++G       M+S ++DMY +   +  A   F++    E+D  TW
Sbjct: 428 LRNPDIGKQTHGYLLRNGI--QFEGMDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATW 485

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N++++GY ++G   +   +  +M  ++  PN  T  SI+ AC     +  G+Q+H   +R
Sbjct: 486 NSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFSIR 545

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
             LD N+ +A ALIDMY+K G+I+ ++ +FS+ +++ +VT+++M++GYG HG G+ A+ +
Sbjct: 546 NDLDQNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQHGMGESALFM 605

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLG 461
           F  M KSG++PD +  +AVL+ACS+AGLVDEGL+ F+SM   YN+ P+ E + CV D+LG
Sbjct: 606 FHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQIFESMRTVYNIQPSTEHFCCVADMLG 665

Query: 462 RAGRVKEAYELIKSMPFKPD-ESVWGPLLGACKEHRLPNLGKLAALRVLDLKP--NMMGT 518
           RAGRV +AYE +  +  K +   +WG LL AC+ H+   LGKL A ++L+++      G 
Sbjct: 666 RAGRVDKAYEFVIGLGEKGNVMEIWGSLLAACRIHKQFELGKLVAKKLLEMEKINGKTGY 725

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
           +++LSNIYA E  WE     RK MR  G KKE G SWIE+   +  F + D+    +  +
Sbjct: 726 HVLLSNIYAEERNWENVDIVRKQMRERGLKKETGSSWIEIAGYMNHFASKDRKHPQSDQI 785

Query: 579 YGVLEMLIRHMNETAYEP 596
           Y +LE L+  M    Y P
Sbjct: 786 YSMLEELLMEMKHAGYRP 803



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 141/517 (27%), Positives = 251/517 (48%), Gaps = 46/517 (8%)

Query: 42  PKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFV 101
           PK P+I     +     EG +  AR LFD +P    V W  +I G    N  ++A   + 
Sbjct: 26  PKIPTIRYR--LSRLCQEGQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYS 83

Query: 102 EMVRN--EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
            M  +  +V  +++T SSVLKAC   ++L     VH   ++  +  S  V NSL+++Y+ 
Sbjct: 84  NMKSSSPQVKCDSYTYSSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSM 143

Query: 160 CCISM------------DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLL 207
           C  +             D  R VF+ M+ +  V+W TLI  Y  +      +  F  M+ 
Sbjct: 144 CSSTTPDGKMVSGYSRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMK 203

Query: 208 EGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG--FGSNLPVMNSILDMYCRFDCL 265
            G++ +P SF     A +S G      ++H  ++K G  + ++L V++S + MY    CL
Sbjct: 204 IGIKPSPVSFVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCL 263

Query: 266 SDANQYFDEMTEKDLITWNTIIAGY-EKSGSSECLNM-FSKMKSERFSPNCFTFTSIIAA 323
             A + FD   E++   WNT+I+ + + + S E + + F  ++SE  + +  T  S I+A
Sbjct: 264 EFAKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISA 323

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTW 383
            + L      +Q+HA +++      + + NALI MY++C +I  S KIF  M ++D+V+W
Sbjct: 324 ASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSW 383

Query: 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS-----------HAGLVD 432
            +M+  +  +G   EA+ LF EM K  +  D +   A+L+A S           H  L+ 
Sbjct: 384 NTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLR 443

Query: 433 EGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELI-KSMPFKPDESVWGPLLGA 491
            G++ F+ M+ Y           ++D+  ++G ++ A  +  KS   + D++ W  ++  
Sbjct: 444 NGIQ-FEGMDSY-----------LIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSG 491

Query: 492 CKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA 528
             ++ L +   L   ++LD K  +M   + L++I  A
Sbjct: 492 YTQNGLVDQAFLILRQMLDQK--VMPNVVTLASILPA 526



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 120/413 (29%), Positives = 217/413 (52%), Gaps = 14/413 (3%)

Query: 66  RTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGM 125
           R +FD M +R VV+W  +IA Y     + +A   F  M++  + P+  +  +V  A   +
Sbjct: 164 RKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSSL 223

Query: 126 KSLSNAALVHGMAIKEGLE--GSIYVENSLMDVYATC-CISMDNARLVFNDMKWKNDVSW 182
               NA +VHGM +K G E    +YV +S + +YA   C+    A+ VF++   +N   W
Sbjct: 224 GDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEF--AKKVFDNCLERNTEVW 281

Query: 183 TTLITGYAHSGNGYGGLGVFKEML-LEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
            T+I+ +  +     G+ +F + +  E   ++  +   A+ A +        + +HA VI
Sbjct: 282 NTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVI 341

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLN 300
           K+   + + VMN+++ MY R + +  + + FD M EKD+++WNT+I+ + ++G + E L 
Sbjct: 342 KNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALM 401

Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360
           +F +MK +    +  T T++++A + L     G+Q H  ++R G+     + + LIDMYA
Sbjct: 402 LFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFE-GMDSYLIDMYA 460

Query: 361 KCGNISDSQKIF--SEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVF 418
           K G I  +Q +F  S   +RD  TW SMM GY  +G   +A  +  +M+   V P+ +  
Sbjct: 461 KSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTL 520

Query: 419 MAVLTACSHAGLVDEG--LKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
            ++L AC+ +G +D G  L  F   ND  ++ N  +   ++D+  ++G +  A
Sbjct: 521 ASILPACNPSGYIDWGKQLHGFSIRND--LDQNVFVATALIDMYSKSGSIAHA 571



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 96/209 (45%), Gaps = 16/209 (7%)

Query: 237 HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE-KSGS 295
           H  +  H     +P +   L   C+   L  A Q FD +     + WNTII G    +  
Sbjct: 16  HLPLHTHSTNPKIPTIRYRLSRLCQEGQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFP 75

Query: 296 SECLNMFSKMKSERFSPNC--FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353
            E L  +S MKS      C  +T++S++ ACA    L  G+ VHA  +R  ++ +  + N
Sbjct: 76  DEALLFYSNMKSSSPQVKCDSYTYSSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYN 135

Query: 354 ALIDMYAKCGNISDS-------------QKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           +L++MY+ C + +               +K+F  M  R +V W +++  Y       EA+
Sbjct: 136 SLLNMYSMCSSTTPDGKMVSGYSRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAV 195

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
           + F  M+K G++P  + F+ V  A S  G
Sbjct: 196 KQFSMMMKIGIKPSPVSFVNVFPAFSSLG 224


>gi|42563517|ref|NP_187185.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546760|sp|Q9MA85.2|PP215_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g05340
 gi|332640702|gb|AEE74223.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 658

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 183/559 (32%), Positives = 305/559 (54%), Gaps = 4/559 (0%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           I +   ++  +L+  Y   G + +A  LFDEMP RDV+S  ++  G+   N   ++  V 
Sbjct: 85  IHRNALVVWNSLLSLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLR-NRETESGFVL 143

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
           ++ +      +  TL+ VL  C   +      ++H +AI  G +  I V N L+  Y  C
Sbjct: 144 LKRMLGSGGFDHATLTIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKC 203

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
             S+ + R VF+ M  +N ++ T +I+G   +     GL +F  M    V  N  ++  A
Sbjct: 204 GCSV-SGRGVFDGMSHRNVITLTAVISGLIENELHEDGLRLFSLMRRGLVHPNSVTYLSA 262

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           + AC+ +  +  G+ IHA + K+G  S L + ++++DMY +   + DA   F+  TE D 
Sbjct: 263 LAACSGSQRIVEGQQIHALLWKYGIESELCIESALMDMYSKCGSIEDAWTIFESTTEVDE 322

Query: 281 ITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           ++   I+ G  ++GS E  +  F +M       +    ++++       +L  G+Q+H+ 
Sbjct: 323 VSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAVLGVSFIDNSLGLGKQLHSL 382

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
           +++R   GN  + N LI+MY+KCG+++DSQ +F  M  R+ V+W SM+  +  HGHG  A
Sbjct: 383 VIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGHGLAA 442

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVD 458
           ++L++EM    V+P  + F+++L ACSH GL+D+G +    M + + + P  E Y C++D
Sbjct: 443 LKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGIEPRTEHYTCIID 502

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518
           +LGRAG +KEA   I S+P KPD  +W  LLGAC  H    +G+ AA ++    P+    
Sbjct: 503 MLGRAGLLKEAKSFIDSLPLKPDCKIWQALLGACSFHGDTEVGEYAAEQLFQTAPDSSSA 562

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
           +I+++NIY++ GKW+E AK  K M+ MG  KE G+S IE+  K   F+  DK+    + +
Sbjct: 563 HILIANIYSSRGKWKERAKTIKRMKAMGVTKETGISSIEIEHKTHSFVVEDKLHPQAEAI 622

Query: 579 YGVLEMLIRHMNETAYEPD 597
           Y VL  L   M +  Y PD
Sbjct: 623 YDVLSGLFPVMVDEGYRPD 641


>gi|225438217|ref|XP_002263704.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49740-like [Vitis vinifera]
          Length = 729

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 191/511 (37%), Positives = 291/511 (56%), Gaps = 14/511 (2%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPE--RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
           L+  YF+ G + +A  +F+E      D +++ VMI G  S     +A  +F EM    + 
Sbjct: 225 LLTMYFNSGKVADAYEVFEEAESTVHDDITFNVMIGGLASVGRDEEALIMFKEMQEACLR 284

Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
           P   T  SV+ +C   +    +  VH  AIK G E    V N+ M +Y++C  ++    +
Sbjct: 285 PTELTFVSVMSSCSSARV---SHQVHAQAIKMGFEACTPVSNAAMTMYSSCG-NLHAVHM 340

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYG-GLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
           VF+ ++ K+ +SW  +I  YA  GN Y   +  F +M   G+E  P  F+I     AS+ 
Sbjct: 341 VFDRLEEKDLISWNIIIMNYAQ-GNFYRLAILAFLQMQRAGIE--PDEFTIG-SLLASSE 396

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            +   K+  A V K+G  S + V N+++  + +   +  A Q F+ M+  +LI+WNTII+
Sbjct: 397 SLEIVKMFQALVSKNGLNSKIEVSNALVSAFSKHGQIEQAYQVFNNMSSPNLISWNTIIS 456

Query: 289 GYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           G+  +G + + L  F ++      PN +T + +++ CA+++AL  G+Q+H  I+R G+  
Sbjct: 457 GFLFNGFTLQGLEQFYELLMSTLKPNAYTLSIVLSICASISALRHGKQIHGYILRSGVFS 516

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
             +L NALI MYAKCG++  S +IF+ M+ RD+V+W +M+  Y  HG GKEA+  F  M 
Sbjct: 517 VTSLGNALITMYAKCGDLDWSLRIFNVMNGRDIVSWNAMISAYAQHGKGKEAVHFFKAMQ 576

Query: 408 KS-GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGR 465
            S GV+PD+  F AVL+ACSHAGLVD+G + F SM NDY   P  +   C+VDLLGRAG 
Sbjct: 577 DSGGVKPDQATFTAVLSACSHAGLVDDGTRIFNSMVNDYGFEPGADHLSCIVDLLGRAGY 636

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           ++EA  LI S   K   S+W  L  AC  H    LG++ A  +L+++ N    Y++LSNI
Sbjct: 637 LEEAERLINSKHLKIVSSIWWTLFSACAAHGNLRLGRIVAGFLLEIEQNDPAVYVLLSNI 696

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWI 556
           YAA G+WEE A  R +M+     K+ G SWI
Sbjct: 697 YAAAGQWEEAANTRDLMQKTRVAKQPGCSWI 727



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 129/470 (27%), Positives = 226/470 (48%), Gaps = 49/470 (10%)

Query: 93  HNQAWT-VFVEM-VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVE 150
           HN A   +FV++   N + P+ FTLSS L AC  ++  ++   +H  +I+ GL+   +V 
Sbjct: 32  HNSASVQLFVQIHSSNYLKPDHFTLSSTLTACANLRYAASGNQLHAYSIQTGLKAYTHVG 91

Query: 151 NSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTL------------------------- 185
           N+L+  YA     + + + VFN+++  +  SWTTL                         
Sbjct: 92  NTLLSFYAKSK-DLVSVQRVFNEIENPDVYSWTTLLSACTKLGQIGYACHLFNQTPRMIP 150

Query: 186 ------ITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAA 239
                 ITG A + +    L +F+EM   GV  + Y+F+  +  C S   + FG+ +H  
Sbjct: 151 VVWNAIITGCAENKHTEIALNLFREMHQLGVRHDKYTFASVLSLC-SLELLDFGREVHTL 209

Query: 240 VIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM--TEKDLITWNTIIAGYEKSG-SS 296
           VIK GF     V+N++L MY     ++DA + F+E   T  D IT+N +I G    G   
Sbjct: 210 VIKTGFLVRASVINALLTMYFNSGKVADAYEVFEEAESTVHDDITFNVMIGGLASVGRDE 269

Query: 297 ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALI 356
           E L MF +M+     P   TF S++++C++        QVHA  ++ G +    ++NA +
Sbjct: 270 EALIMFKEMQEACLRPTELTFVSVMSSCSS---ARVSHQVHAQAIKMGFEACTPVSNAAM 326

Query: 357 DMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI 416
            MY+ CGN+     +F  + ++DL++W  +++ Y      + AI  F +M ++G+ PD  
Sbjct: 327 TMYSSCGNLHAVHMVFDRLEEKDLISWNIIIMNYAQGNFYRLAILAFLQMQRAGIEPDEF 386

Query: 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYN-VNPNKEIYGCVVDLLGRAGRVKEAYELIKS 475
              ++L +     +V    K F+++   N +N   E+   +V    + G++++AY++  +
Sbjct: 387 TIGSLLASSESLEIV----KMFQALVSKNGLNSKIEVSNALVSAFSKHGQIEQAYQVFNN 442

Query: 476 MPFKPDESVWGPLLGA--CKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
           M   P+   W  ++         L  L +   L +  LKPN     I+LS
Sbjct: 443 MS-SPNLISWNTIISGFLFNGFTLQGLEQFYELLMSTLKPNAYTLSIVLS 491



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 128/491 (26%), Positives = 224/491 (45%), Gaps = 48/491 (9%)

Query: 50  TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQ-AWTVFVEMVRNEV 108
           T L+ +    G I  A  LF++ P    V W  +I G    N H + A  +F EM +  V
Sbjct: 123 TTLLSACTKLGQIGYACHLFNQTPRMIPVVWNAIITGCAE-NKHTEIALNLFREMHQLGV 181

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
             + +T +SVL  C  ++ L     VH + IK G      V N+L+ +Y       D A 
Sbjct: 182 RHDKYTFASVLSLCS-LELLDFGREVHTLVIKTGFLVRASVINALLTMYFNSGKVAD-AY 239

Query: 169 LVFNDMK--WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
            VF + +    +D+++  +I G A  G     L +FKEM    +     +F   + +C+S
Sbjct: 240 EVFEEAESTVHDDITFNVMIGGLASVGRDEEALIMFKEMQEACLRPTELTFVSVMSSCSS 299

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286
                    +HA  IK GF +  PV N+ + MY     L   +  FD + EKDLI+WN I
Sbjct: 300 A---RVSHQVHAQAIKMGFEACTPVSNAAMTMYSSCGNLHAVHMVFDRLEEKDLISWNII 356

Query: 287 IAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           I  Y +       +  F +M+     P+ FT  S++A+  +L  +   Q   A + + GL
Sbjct: 357 IMNYAQGNFYRLAILAFLQMQRAGIEPDEFTIGSLLASSESLEIVKMFQ---ALVSKNGL 413

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
           +  + ++NAL+  ++K G I  + ++F+ MS  +L++W +++ G+  +G   + +E F E
Sbjct: 414 NSKIEVSNALVSAFSKHGQIEQAYQVFNNMSSPNLISWNTIISGFLFNGFTLQGLEQFYE 473

Query: 406 MVKSGVRPDRIVFMAVLTACS-----------HAGLVDEGLKYFKSMND----------- 443
           ++ S ++P+      VL+ C+           H  ++  G+    S+ +           
Sbjct: 474 LLMSTLKPNAYTLSIVLSICASISALRHGKQIHGYILRSGVFSVTSLGNALITMYAKCGD 533

Query: 444 -------YNVNPNKEI--YGCVVDLLGRAGRVKEAYELIKSMP----FKPDESVWGPLLG 490
                  +NV   ++I  +  ++    + G+ KEA    K+M      KPD++ +  +L 
Sbjct: 534 LDWSLRIFNVMNGRDIVSWNAMISAYAQHGKGKEAVHFFKAMQDSGGVKPDQATFTAVLS 593

Query: 491 ACKEHRLPNLG 501
           AC    L + G
Sbjct: 594 ACSHAGLVDDG 604



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 109/230 (47%), Gaps = 34/230 (14%)

Query: 278 KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERF-SPNCFTFTSIIAACATLAALSCGQQ 335
           + LI  N ++A   +S  +S  + +F ++ S  +  P+ FT +S + ACA L   + G Q
Sbjct: 15  EQLIKINQLLAELTRSHHNSASVQLFVQIHSSNYLKPDHFTLSSTLTACANLRYAASGNQ 74

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMM-------- 387
           +HA  ++ GL     + N L+  YAK  ++   Q++F+E+ + D+ +WT+++        
Sbjct: 75  LHAYSIQTGLKAYTHVGNTLLSFYAKSKDLVSVQRVFNEIENPDVYSWTTLLSACTKLGQ 134

Query: 388 IGYGAH-----------------------GHGKEAIELFDEMVKSGVRPDRIVFMAVLTA 424
           IGY  H                        H + A+ LF EM + GVR D+  F +VL+ 
Sbjct: 135 IGYACHLFNQTPRMIPVVWNAIITGCAENKHTEIALNLFREMHQLGVRHDKYTFASVLSL 194

Query: 425 CSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
           CS   L+D G +    +          +   ++ +   +G+V +AYE+ +
Sbjct: 195 CS-LELLDFGREVHTLVIKTGFLVRASVINALLTMYFNSGKVADAYEVFE 243



 Score = 39.3 bits (90), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN- 106
           L   LI  Y   G ++ +  +F+ M  RD+VSW  MI+ Y       +A   F  M  + 
Sbjct: 520 LGNALITMYAKCGDLDWSLRIFNVMNGRDIVSWNAMISAYAQHGKGKEAVHFFKAMQDSG 579

Query: 107 EVNPNAFTLSSVLKAC 122
            V P+  T ++VL AC
Sbjct: 580 GVKPDQATFTAVLSAC 595


>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
           [Vitis vinifera]
          Length = 537

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 182/529 (34%), Positives = 291/529 (55%), Gaps = 53/529 (10%)

Query: 118 VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDV---YATCCISMDNARLVFNDM 174
           +LK C  +  L     +H   +K  L  S ++   ++DV   Y       + A L+F  +
Sbjct: 20  ILKDCPNIVELKK---IHAHIVKFSLSQSSFLVTKMVDVCNHYG----ETEYANLLFKGV 72

Query: 175 KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP-----YSFSIAVRACASTGW 229
              N   +  +I  Y H+      + V+K+ML      NP     ++F   V++CA    
Sbjct: 73  ADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMC 132

Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
              GK +H  V K G  SN  V NS+++MY + D L DA++ F+EMTE+D ++WNT+I+G
Sbjct: 133 YDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISG 192

Query: 290 YEKSGS--------------------------------SECLNMFSKMKSERFSPNCFTF 317
           + + G                                 ++ L  F +M+     P+  + 
Sbjct: 193 HVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISL 252

Query: 318 TSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD 377
            S++  CA L AL  G+ +H    + G   N+ + NALI+MYAKCG+I   +++F +M +
Sbjct: 253 VSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKE 312

Query: 378 RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY 437
           RD+++W++M++G   HG  +EAIELF EM K+ + P  I F+ +LTAC+HAGL++EGL+Y
Sbjct: 313 RDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRY 372

Query: 438 FKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR 496
           F+SM  DYN+ P  E YGC+V+LLG +GR+ +A EL+K MP KPD  +WG LL +C+ H 
Sbjct: 373 FESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHG 432

Query: 497 LPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWI 556
              +  +A   +L+L+P   G Y++LSN+YA  GKW+  ++ RK+MR    KK  G S I
Sbjct: 433 NLKIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSI 492

Query: 557 EVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDL 605
           EV + V  F + D     ++ +  VL++L+ H ++      I+ ++HD+
Sbjct: 493 EVDNMVQEFASGDDSKPFSKAICRVLKLLVMHQSKI-----IEIMVHDI 536



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 183/394 (46%), Gaps = 40/394 (10%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV- 104
           S L T ++      G  E A  LF  + + +   +  MI  Y     +  A TV+ +M+ 
Sbjct: 46  SFLVTKMVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLG 105

Query: 105 ----RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
                N + P+ FT   V+K+C G+        VHG   K G + +  VENSL+++Y   
Sbjct: 106 NPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVK- 164

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSG------------------------NGY 196
           C S+D+A  VF +M  ++ VSW TLI+G+   G                        +GY
Sbjct: 165 CDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGY 224

Query: 197 GGLG-------VFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNL 249
             +G        F+ M + G+E +  S    +  CA  G +  GK IH    K GF  N+
Sbjct: 225 ARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNI 284

Query: 250 PVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSE 308
            V N++++MY +   +    + FD+M E+D+I+W+T+I G    G + E + +F +M+  
Sbjct: 285 CVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKA 344

Query: 309 RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-GLDGNLALANALIDMYAKCGNISD 367
           +  P+  TF  ++ ACA    L+ G +    + R   ++  +     L+++    G +  
Sbjct: 345 KIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQ 404

Query: 368 SQKIFSEMSDR-DLVTWTSMMIGYGAHGHGKEAI 400
           + ++  +M  + D   W S++    +HG+ K A+
Sbjct: 405 ALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAV 438



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 105/222 (47%), Gaps = 32/222 (14%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVV------------------------ 78
           K  +++  +L++ Y     +++A  +F+EM ERD V                        
Sbjct: 149 KSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEE 208

Query: 79  -------SWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNA 131
                  SWT +++GY    C+  A   F  M    + P+  +L SVL  C  + +L   
Sbjct: 209 MQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELG 268

Query: 132 ALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAH 191
             +H  A K G   +I V N+L+++YA C  S+D  R +F+ MK ++ +SW+T+I G A+
Sbjct: 269 KWIHIYADKAGFLRNICVCNALIEMYAKCG-SIDQGRRLFDQMKERDVISWSTMIVGLAN 327

Query: 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG 233
            G     + +F+EM    +E +  +F   + ACA  G ++ G
Sbjct: 328 HGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEG 369


>gi|302790816|ref|XP_002977175.1| hypothetical protein SELMODRAFT_106630 [Selaginella moellendorffii]
 gi|300155151|gb|EFJ21784.1| hypothetical protein SELMODRAFT_106630 [Selaginella moellendorffii]
          Length = 806

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 184/506 (36%), Positives = 288/506 (56%), Gaps = 10/506 (1%)

Query: 44  GPSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           G  +L  N LI  Y   G ++EA  +F +MP R+VVSWT MIA       ++ A  +F  
Sbjct: 281 GTRVLVLNALISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQSGHYSFAVKLFDG 340

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKS---LSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
           M+   +NPN  T +SV+ A   +     L     +H      G++    V+NSL+++YA 
Sbjct: 341 MIAEGINPNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPIVQNSLINMYAR 400

Query: 160 CCISMDNARLVFNDM--KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSF 217
             + +  AR VF+ +    K  VS+TT+I  YAH+G+    L +F+EM   GV  N  +F
Sbjct: 401 SGL-LAEAREVFDSILENSKTVVSFTTMIAAYAHNGHPRQALEIFREMTARGVAPNEITF 459

Query: 218 SIAVRACASTGWVSFGKLIHAAVIKHGFGSNLP-VMNSILDMYCRFDCLSDANQYFDEMT 276
           +  + AC + G ++ G  IH  +I+ G  S+ P   NS++DMY +   L  A + F+ M 
Sbjct: 460 ATVLAACVAIGDLASGAWIHERMIESGLDSSDPFAYNSLVDMYAKCGDLGFAARVFETMK 519

Query: 277 EKDLITWNTIIAGYEKSGSSEC-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ 335
            KDL+ W TIIA   +SG++   L+++ +M      P+  T ++++ ACA L  L+ G++
Sbjct: 520 TKDLVAWTTIIAANVQSGNNRAALDLYDRMLQSGIHPDIATLSTLLVACANLGDLAMGEK 579

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
           +H   +R  L+ +    NAL  MYAKCG++  + +++      D+ TWTSM+  +   G 
Sbjct: 580 IHRQALRSKLEQDAHFQNALAAMYAKCGSLEKATRLYRRCRGSDVATWTSMLAAHSQQGL 639

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYG 454
              A+EL+ EM   GVRP+ + F+ VL +CS AGLV EG ++F S+ +DY   P+ E +G
Sbjct: 640 ASVALELYAEMESEGVRPNEVTFIPVLISCSQAGLVAEGREFFHSITSDYGSQPSAEHFG 699

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514
           C+VD+LGRAG++++A EL+ SMPF PDE  W  LL +CK H    +G  AA  +L+L P 
Sbjct: 700 CMVDVLGRAGKLRDAEELLDSMPFYPDEIAWQSLLSSCKLHTDAEIGTRAAECLLELDPE 759

Query: 515 MMGTYIILSNIYAAEGKWEEFAKFRK 540
               ++ LS IYAA G+  +  + ++
Sbjct: 760 STSQFVALSQIYAAAGRNSDIDEIKR 785



 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 126/463 (27%), Positives = 231/463 (49%), Gaps = 11/463 (2%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S + + L+  Y   G I+ A   FD+  E     W  +++       H +A  +F +M +
Sbjct: 185 SSIQSALVTMYAQCGRIDLAMAAFDDNRELGTAPWNAIMSALAGAGHHRRAIELFFQMEQ 244

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           ++ +    + +  L AC     L     +H     E     + V N+L+ +Y  C   +D
Sbjct: 245 HQCSDR--SCAIALGACAAAGHLRGGIQIHDKIQSEIHGTRVLVLNALISMYVRCG-KLD 301

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A  VF DM  +N VSWT++I   A SG+    + +F  M+ EG+  N  +++  V A A
Sbjct: 302 EALRVFADMPHRNVVSWTSMIAAVAQSGHYSFAVKLFDGMIAEGINPNEKTYASVVSAIA 361

Query: 226 STGW---VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE--KDL 280
             G    +  G+ IH+ +   G  ++  V NS+++MY R   L++A + FD + E  K +
Sbjct: 362 HLGRDAILDRGRKIHSQITASGIDADPIVQNSLINMYARSGLLAEAREVFDSILENSKTV 421

Query: 281 ITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           +++ T+IA Y  +G   + L +F +M +   +PN  TF +++AAC  +  L+ G  +H  
Sbjct: 422 VSFTTMIAAYAHNGHPRQALEIFREMTARGVAPNEITFATVLAACVAIGDLASGAWIHER 481

Query: 340 IVRRGLDGNLALA-NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
           ++  GLD +   A N+L+DMYAKCG++  + ++F  M  +DLV WT+++      G+ + 
Sbjct: 482 MIESGLDSSDPFAYNSLVDMYAKCGDLGFAARVFETMKTKDLVAWTTIIAANVQSGNNRA 541

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVD 458
           A++L+D M++SG+ PD      +L AC++ G +  G K  +      +  +      +  
Sbjct: 542 ALDLYDRMLQSGIHPDIATLSTLLVACANLGDLAMGEKIHRQALRSKLEQDAHFQNALAA 601

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLG 501
           +  + G +++A  L +      D + W  +L A  +  L ++ 
Sbjct: 602 MYAKCGSLEKATRLYRRCR-GSDVATWTSMLAAHSQQGLASVA 643



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 119/437 (27%), Positives = 229/437 (52%), Gaps = 14/437 (3%)

Query: 63  EEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKAC 122
           + A  LFD MP+R    W V++  + + +       ++  M      P+A      + AC
Sbjct: 102 DTAIALFDAMPDRRPFCWNVLMKEFLAADRPRDTLELYRRMSVENTQPSACGFMWAIVAC 161

Query: 123 KGMKSLSNAALVH-GMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS 181
             +K L+    +H  +A   G+  SI  +++L+ +YA C   +D A   F+D +      
Sbjct: 162 GRIKDLAQGRSIHYRVATGRGINSSI--QSALVTMYAQCG-RIDLAMAAFDDNRELGTAP 218

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           W  +++  A +G+    + +F +M  E  + +  S +IA+ ACA+ G +  G  IH  + 
Sbjct: 219 WNAIMSALAGAGHHRRAIELFFQM--EQHQCSDRSCAIALGACAAAGHLRGGIQIHDKIQ 276

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLN 300
               G+ + V+N+++ MY R   L +A + F +M  +++++W ++IA   +SG  S  + 
Sbjct: 277 SEIHGTRVLVLNALISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQSGHYSFAVK 336

Query: 301 MFSKMKSERFSPNCFTFTSIIAACATL---AALSCGQQVHAGIVRRGLDGNLALANALID 357
           +F  M +E  +PN  T+ S+++A A L   A L  G+++H+ I   G+D +  + N+LI+
Sbjct: 337 LFDGMIAEGINPNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPIVQNSLIN 396

Query: 358 MYAKCGNISDSQKIFSEM--SDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           MYA+ G +++++++F  +  + + +V++T+M+  Y  +GH ++A+E+F EM   GV P+ 
Sbjct: 397 MYARSGLLAEAREVFDSILENSKTVVSFTTMIAAYAHNGHPRQALEIFREMTARGVAPNE 456

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEI-YGCVVDLLGRAGRVKEAYELIK 474
           I F  VL AC   G +  G    + M +  ++ +    Y  +VD+  + G +  A  + +
Sbjct: 457 ITFATVLAACVAIGDLASGAWIHERMIESGLDSSDPFAYNSLVDMYAKCGDLGFAARVFE 516

Query: 475 SMPFKPDESVWGPLLGA 491
           +M  K D   W  ++ A
Sbjct: 517 TMKTK-DLVAWTTIIAA 532



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 90/381 (23%), Positives = 180/381 (47%), Gaps = 10/381 (2%)

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
           ++ +R+         +++L+ C   ++L +   VH   +   L  +  +   +  +YA C
Sbjct: 39  LDKLRHRSTSQLLLYANLLRQCGNQRALDHGRRVHAHIVSRRLARNALLGELVFQMYARC 98

Query: 161 -CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
            C   D A  +F+ M  +    W  L+  +  +      L +++ M +E  + +   F  
Sbjct: 99  RCF--DTAIALFDAMPDRRPFCWNVLMKEFLAADRPRDTLELYRRMSVENTQPSACGFMW 156

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
           A+ AC     ++ G+ IH  V   G G N  + ++++ MY +   +  A   FD+  E  
Sbjct: 157 AIVACGRIKDLAQGRSIHYRVAT-GRGINSSIQSALVTMYAQCGRIDLAMAAFDDNRELG 215

Query: 280 LITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
              WN I++    +G     + +F +M+  + S    +    + ACA    L  G Q+H 
Sbjct: 216 TAPWNAIMSALAGAGHHRRAIELFFQMEQHQCSDR--SCAIALGACAAAGHLRGGIQIHD 273

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
            I        + + NALI MY +CG + ++ ++F++M  R++V+WTSM+      GH   
Sbjct: 274 KIQSEIHGTRVLVLNALISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQSGHYSF 333

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAG---LVDEGLKYFKSMNDYNVNPNKEIYGC 455
           A++LFD M+  G+ P+   + +V++A +H G   ++D G K    +    ++ +  +   
Sbjct: 334 AVKLFDGMIAEGINPNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPIVQNS 393

Query: 456 VVDLLGRAGRVKEAYELIKSM 476
           ++++  R+G + EA E+  S+
Sbjct: 394 LINMYARSGLLAEAREVFDSI 414


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 196/586 (33%), Positives = 317/586 (54%), Gaps = 44/586 (7%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           L+  Y   G + EA+TLFD   ++D+VSW  +I+  +  +   +A      M+++ V PN
Sbjct: 227 LVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPN 286

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAI--KEGLEGSIYVENSLMDVYATCCISMDNARL 169
             TL+SVL AC  ++ L     +H   +   + +E S +V  +L+D+Y  C    +  RL
Sbjct: 287 GVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIENS-FVGCALVDMYCNC-KQPEKGRL 344

Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAVRACASTG 228
           VF+ M  +    W  +I GY  +   Y  + +F EM+ E G+  N  + S  + AC    
Sbjct: 345 VFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCE 404

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
                + IH+ V+K GF  +  V N+++DMY R   +  A   F  M  KD+++WNT+I 
Sbjct: 405 SFLDKEGIHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMIT 464

Query: 289 GYEKSGS-SECLNMFSKM------------------KSERFSPNCFTFTSIIAACATLAA 329
           GY   G   + LN+   M                  K+    PN  T  +++  CA LAA
Sbjct: 465 GYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAA 524

Query: 330 LSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIG 389
           L  G+++HA  V++ L  ++A+ +AL+DMYAKCG ++ S+ +F +MS R+++TW  +++ 
Sbjct: 525 LGKGKEIHAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVRNVITWNVLIMA 584

Query: 390 YGAHGHGKEAIELFDEMVKSG-----VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-D 443
           YG HG G+EA++LF  MV+ G     +RP+ + ++A+  + SH+G+VDEGL  F +M   
Sbjct: 585 YGMHGKGEEALKLFRRMVEEGDNNREIRPNEVTYIAIFASLSHSGMVDEGLNLFYTMKAK 644

Query: 444 YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDE-SVWGPLLGACKEHRLPNLGK 502
           + + P  + Y C+VDLLGR+G+++EAY LIK+MP    +   W  LLGACK H+   +G+
Sbjct: 645 HGIEPTSDHYACLVDLLGRSGQIEEAYNLIKTMPSNMKKVDAWSSLLGACKIHQNLEIGE 704

Query: 503 LAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKV 562
           +AA  +  L PN++         Y  +      +   + M+  G +KE G SWIE  D+V
Sbjct: 705 IAAKNLFVLDPNVLD--------YGTKQ-----SMLGRKMKEKGVRKEPGCSWIEHGDEV 751

Query: 563 CGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
             F+A D     ++ V+  LE L   M +  Y PD  C++H++  E
Sbjct: 752 HKFLAGDVSHPQSKEVHEYLETLSLRMKKEGYVPDTSCVLHNVGEE 797



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 141/501 (28%), Positives = 233/501 (46%), Gaps = 39/501 (7%)

Query: 94  NQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSL 153
           +QA + +  MV   V P+ F   +VLKA  G++ L+    +H    K G      V NSL
Sbjct: 67  HQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNSL 126

Query: 154 MDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMN 213
           +++Y  C   +D AR VF+++  ++DVSW ++I            + +F+ MLLE V   
Sbjct: 127 VNMYGKCG-DIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENV--G 183

Query: 214 PYSFSIAVRACASTGWVS---FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQ 270
           P SF++   A A +  ++    GK +HA V+++G        N+++ MY +   + +A  
Sbjct: 184 PTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNGDWRTF-TNNALVTMYAKLGRVYEAKT 242

Query: 271 YFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAA 329
            FD   +KDL++WNTII+   ++    E L     M      PN  T  S++ AC+ L  
Sbjct: 243 LFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEM 302

Query: 330 LSCGQQVHAGIV-RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMI 388
           L CG+++HA ++    L  N  +  AL+DMY  C      + +F  M  R +  W +M+ 
Sbjct: 303 LGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIA 362

Query: 389 GYGAHGHGKEAIELFDEMV-KSGVRPDRIVFMAVLTAC--SHAGLVDEGLKYFKSMNDYN 445
           GY  +    EAIELF EMV + G+ P+ +   +VL AC    + L  EG+     +  + 
Sbjct: 363 GYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIH--SCVVKWG 420

Query: 446 VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA---C---------- 492
              +K +   ++D+  R GR++ A  +  SM  K D   W  ++     C          
Sbjct: 421 FEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRK-DIVSWNTMITGYVVCGRHDDALNLL 479

Query: 493 -------KEHRLPNLGKLAALRVLDLKPNMMGTYIILSN--IYAAEGKWEEFAKFRKIMR 543
                   EHR+         +   LKPN +    +L      AA GK +E   +  + +
Sbjct: 480 HDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIHAY-AVKQ 538

Query: 544 GMGSKKEVGMSWIEVRDKVCG 564
            +     VG + +++  K CG
Sbjct: 539 MLSKDVAVGSALVDMYAK-CG 558



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/473 (26%), Positives = 218/473 (46%), Gaps = 25/473 (5%)

Query: 45  PSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
           P+ +  +L+  Y   G I+ AR +FDE+  RD VSW  MI     F     A  +F  M+
Sbjct: 119 PTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLML 178

Query: 105 RNEVNPNAFTLSSVLKACKGM-KSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
              V P +FTL SV  AC  +   L     VH   ++ G +   +  N+L+ +YA     
Sbjct: 179 LENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNG-DWRTFTNNALVTMYAKLG-R 236

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +  A+ +F+    K+ VSW T+I+  + +      L     ML  GV  N  + +  + A
Sbjct: 237 VYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPA 296

Query: 224 CASTGWVSFGKLIHAAVI-KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
           C+    +  GK IHA V+  +    N  V  +++DMYC           FD M  + +  
Sbjct: 297 CSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAV 356

Query: 283 WNTIIAGYEKSG-SSECLNMFSKMKSER-FSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           WN +IAGY ++    E + +F +M  E   SPN  T +S++ AC    +    + +H+ +
Sbjct: 357 WNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCV 416

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           V+ G + +  + NAL+DMY++ G I  ++ IF  M+ +D+V+W +M+ GY   G   +A+
Sbjct: 417 VKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDAL 476

Query: 401 ELFDEMVKSG------------------VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN 442
            L  +M +                    ++P+ +  M VL  C+    + +G +      
Sbjct: 477 NLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIHAYAV 536

Query: 443 DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
              ++ +  +   +VD+  + G +  +  + + M  + +   W  L+ A   H
Sbjct: 537 KQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVR-NVITWNVLIMAYGMH 588



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 163/317 (51%), Gaps = 12/317 (3%)

Query: 182 WTTLITGYAHSGNGY-GGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAV 240
           W + +     S + +   +  +  M+  GV  + ++F   ++A A    ++ GK +HA V
Sbjct: 52  WVSHLRSQTQSSSTFHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHV 111

Query: 241 IKHGFGSNLP--VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE- 297
            K  FG  LP  V NS+++MY +   +  A + FDE+T +D ++WN++I    +    E 
Sbjct: 112 FK--FGQALPTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWEL 169

Query: 298 CLNMFSKMKSERFSPNCFTFTSIIAACATLA-ALSCGQQVHAGIVRRGLDGNLALANALI 356
            +++F  M  E   P  FT  S+  AC+ L   L  G+QVHA ++R G D      NAL+
Sbjct: 170 AVHLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNG-DWRTFTNNALV 228

Query: 357 DMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI 416
            MYAK G + +++ +F    D+DLV+W +++     +   +EA+     M++SGVRP+ +
Sbjct: 229 TMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGV 288

Query: 417 VFMAVLTACSHAGLVDEG--LKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474
              +VL ACSH  ++  G  +  F  MN+ ++  N  +   +VD+     + ++   +  
Sbjct: 289 TLASVLPACSHLEMLGCGKEIHAFVLMNN-DLIENSFVGCALVDMYCNCKQPEKGRLVFD 347

Query: 475 SMPFKPDESVWGPLLGA 491
            M F+   +VW  ++  
Sbjct: 348 GM-FRRTIAVWNAMIAG 363



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 109/219 (49%), Gaps = 11/219 (5%)

Query: 283 WNTIIAGYEKSGSS--ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           W + +    +S S+  + ++ ++ M +    P+ F F +++ A A +  L+ G+Q+HA +
Sbjct: 52  WVSHLRSQTQSSSTFHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHV 111

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
            + G     A+ N+L++MY KCG+I  ++++F E+++RD V+W SM+         + A+
Sbjct: 112 FKFGQALPTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAV 171

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACS---HAGLVDEGLKYFKSMN-DYNVNPNKEIYGCV 456
            LF  M+   V P     ++V  ACS   +  L+ + +  F   N D+    N  +    
Sbjct: 172 HLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNGDWRTFTNNAL---- 227

Query: 457 VDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           V +  + GRV EA  L      K D   W  ++ +  ++
Sbjct: 228 VTMYAKLGRVYEAKTLFDVFDDK-DLVSWNTIISSLSQN 265


>gi|449456661|ref|XP_004146067.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 793

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 188/558 (33%), Positives = 315/558 (56%), Gaps = 12/558 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + ++ I  Y + G +E A+ +FD   ER+   W  MI+ +   N   +   +F + V +E
Sbjct: 225 VVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESE 284

Query: 108 -VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
               +  TL S + A   ++    A  +H   IK      + V N+L+ +Y+ C  S+D 
Sbjct: 285 DAAIDEVTLLSAISAASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCN-SIDT 343

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           +  +F++M  K+ VSW T+I+ +  +G     L +F EM  + + ++  + +  + A + 
Sbjct: 344 SFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASD 403

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNS-ILDMYCRFDCLSDANQYFDEM--TEKDLITW 283
                 GK  H  ++++G       M+S ++DMY +   +  A   F++    E+D  TW
Sbjct: 404 LRNPDIGKQTHGYLLRNGI--QFEGMDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATW 461

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N++++GY ++G   +   +  +M  ++  PN  T  SI+ AC     +  G+Q+H   +R
Sbjct: 462 NSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFSIR 521

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
             LD N+ +A ALIDMY+K G+I+ ++ +FS+ +++ +VT+++M++GYG HG G+ A+ +
Sbjct: 522 NDLDQNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQHGMGESALFM 581

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLG 461
           F  M KSG++PD +  +AVL+ACS+AGLVDEGL+ F+SM   YN+ P+ E + CV D+LG
Sbjct: 582 FHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQIFESMRTVYNIQPSTEHFCCVADMLG 641

Query: 462 RAGRVKEAYELIKSMPFKPD-ESVWGPLLGACKEHRLPNLGKLAALRVLDLKP--NMMGT 518
           RAGRV +AYE +  +  K +   +WG LL AC+ H+   LGKL A ++L+++      G 
Sbjct: 642 RAGRVDKAYEFVIGLGEKGNVMEIWGSLLAACRIHKQFELGKLVAKKLLEMEKINGKTGY 701

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
           +++LSNIYA E  WE     RK MR  G KKE G SWIE+   +  F + D+    +  +
Sbjct: 702 HVLLSNIYAEERNWENVDIVRKQMRERGLKKETGSSWIEIAGYMNHFASKDRKHPQSDQI 761

Query: 579 YGVLEMLIRHMNETAYEP 596
           Y +LE L+  M    Y P
Sbjct: 762 YSMLEELLMEMKHAGYRP 779



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 137/497 (27%), Positives = 244/497 (49%), Gaps = 44/497 (8%)

Query: 58  DEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN--EVNPNAFTL 115
            EG +  AR LFD +P    V W  +I G    N  ++A   +  M  +  +V  +++T 
Sbjct: 16  QEGQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTY 75

Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM----------- 164
           SSVLKAC   ++L     VH   ++  +  S  V NSL+++Y+ C  +            
Sbjct: 76  SSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSR 135

Query: 165 -DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
            D  R VF+ M+ +  V+W TLI  Y  +      +  F  M+  G++ +P SF     A
Sbjct: 136 CDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPA 195

Query: 224 CASTGWVSFGKLIHAAVIKHG--FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
            +S G      ++H  ++K G  + ++L V++S + MY    CL  A + FD   E++  
Sbjct: 196 FSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTE 255

Query: 282 TWNTIIAGY-EKSGSSECLNMFSK-MKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
            WNT+I+ + + + S E + +F + ++SE  + +  T  S I+A + L      +Q+HA 
Sbjct: 256 VWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAF 315

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
           +++      + + NALI MY++C +I  S KIF  M ++D+V+W +M+  +  +G   EA
Sbjct: 316 VIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEA 375

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACS-----------HAGLVDEGLKYFKSMNDYNVNP 448
           + LF EM K  +  D +   A+L+A S           H  L+  G++ F+ M+ Y    
Sbjct: 376 LMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQ-FEGMDSY---- 430

Query: 449 NKEIYGCVVDLLGRAGRVKEAYELI-KSMPFKPDESVWGPLLGACKEHRLPNLGKLAALR 507
                  ++D+  ++G ++ A  +  KS   + D++ W  ++    ++ L +   L   +
Sbjct: 431 -------LIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQ 483

Query: 508 VLDLK--PNMMGTYIIL 522
           +LD K  PN++    IL
Sbjct: 484 MLDQKVMPNVVTLASIL 500



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 120/413 (29%), Positives = 217/413 (52%), Gaps = 14/413 (3%)

Query: 66  RTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGM 125
           R +FD M +R VV+W  +IA Y     + +A   F  M++  + P+  +  +V  A   +
Sbjct: 140 RKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSSL 199

Query: 126 KSLSNAALVHGMAIKEGLE--GSIYVENSLMDVYATC-CISMDNARLVFNDMKWKNDVSW 182
               NA +VHGM +K G E    +YV +S + +YA   C+    A+ VF++   +N   W
Sbjct: 200 GDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEF--AKKVFDNCLERNTEVW 257

Query: 183 TTLITGYAHSGNGYGGLGVFKEML-LEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
            T+I+ +  +     G+ +F + +  E   ++  +   A+ A +        + +HA VI
Sbjct: 258 NTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVI 317

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLN 300
           K+   + + VMN+++ MY R + +  + + FD M EKD+++WNT+I+ + ++G + E L 
Sbjct: 318 KNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALM 377

Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360
           +F +MK +    +  T T++++A + L     G+Q H  ++R G+     + + LIDMYA
Sbjct: 378 LFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFE-GMDSYLIDMYA 436

Query: 361 KCGNISDSQKIF--SEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVF 418
           K G I  +Q +F  S   +RD  TW SMM GY  +G   +A  +  +M+   V P+ +  
Sbjct: 437 KSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTL 496

Query: 419 MAVLTACSHAGLVDEG--LKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
            ++L AC+ +G +D G  L  F   ND  ++ N  +   ++D+  ++G +  A
Sbjct: 497 ASILPACNPSGYIDWGKQLHGFSIRND--LDQNVFVATALIDMYSKSGSIAHA 547



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 89/186 (47%), Gaps = 16/186 (8%)

Query: 260 CRFDCLSDANQYFDEMTEKDLITWNTIIAGYE-KSGSSECLNMFSKMKSERFSPNC--FT 316
           C+   L  A Q FD +     + WNTII G    +   E L  +S MKS      C  +T
Sbjct: 15  CQEGQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYT 74

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDS-------- 368
           ++S++ ACA    L  G+ VHA  +R  ++ +  + N+L++MY+ C + +          
Sbjct: 75  YSSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYS 134

Query: 369 -----QKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLT 423
                +K+F  M  R +V W +++  Y       EA++ F  M+K G++P  + F+ V  
Sbjct: 135 RCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFP 194

Query: 424 ACSHAG 429
           A S  G
Sbjct: 195 AFSSLG 200


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 182/540 (33%), Positives = 298/540 (55%), Gaps = 20/540 (3%)

Query: 76  DVVSWTVMIAGYTSFNCHNQAWTVFVEMVR-NEVNPNAFTLSSVLKACKGMKSLSNAALV 134
           +  SW V I G+       +A  ++  +++ +   P+ +T   + KAC  +  +   + +
Sbjct: 42  NTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEI 101

Query: 135 HGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGN 194
            G  +  G +  I+V N+++ +  +C   +D AR +F+    ++ VSW ++I GY   G 
Sbjct: 102 LGHVLHLGFDSDIFVSNAVIHLLVSCG-DLDGARKMFDKSCVRDLVSWNSMINGYVRRGW 160

Query: 195 GYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNS 254
            Y  L  ++EM +EG++ +  +    V +CA    +  G+  H  + ++G    +P+ N+
Sbjct: 161 AYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANA 220

Query: 255 ILDMYCR----------FDCLSD------ANQYFDEMTEKDLITWNTIIAGY-EKSGSSE 297
           ++DMY +          FD +++          FDEM +KD++ WN +I GY   +   E
Sbjct: 221 LMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKE 280

Query: 298 CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALID 357
            L +F++M++   +P+  T  S ++AC+ L AL  G  +H  I +  L  N+AL  ALID
Sbjct: 281 ALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALID 340

Query: 358 MYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIV 417
           MYAKCG I+ + ++F E+  R+ +TWT+++ G   HG+   AI  F EM+ + V PD + 
Sbjct: 341 MYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVT 400

Query: 418 FMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
           F+ +L+AC H GLV+EG KYF  M+  +N++P  + Y C+VDLLGRAG ++EA ELIKSM
Sbjct: 401 FLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSM 460

Query: 477 PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFA 536
           P + D  VWG L  AC+ H    +G+ AA ++L + P+  G Y++L+N+Y     W+E  
Sbjct: 461 PIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAG 520

Query: 537 KFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEP 596
           K RK+MR  G +K  G S IEV   V  FI  DK    ++ +Y  L  L R +      P
Sbjct: 521 KXRKLMRQRGVEKTPGCSSIEVNGIVYEFIVRDKSHPQSEQIYECLIQLTRQLELVECTP 580



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 116/478 (24%), Positives = 213/478 (44%), Gaps = 52/478 (10%)

Query: 60  GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119
           G ++ AR +FD+   RD+VSW  MI GY       +A   + EM    + P+  T+  V+
Sbjct: 128 GDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVV 187

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179
            +C  ++ L      H    + GL+ ++ + N+LMD+Y  C  ++++AR +F+ M  K  
Sbjct: 188 SSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCG-NLESARKLFDSMTNKTM 246

Query: 180 VSWTT----------------LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA--V 221
           VSWTT                +I GY H+  G   L +F EM  + + +NP   ++   +
Sbjct: 247 VSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEM--QAMNINPDEVTMVSCL 304

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
            AC+  G +  G  IH  + KH    N+ +  +++DMY +   ++ A Q F E+  ++ +
Sbjct: 305 SACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSL 364

Query: 282 TWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           TW  II+G    G++   +  FS+M      P+  TF  +++AC     +  G++  + +
Sbjct: 365 TWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQM 424

Query: 341 VRR-GLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGH--- 395
             +  L   L   + ++D+  + G + +++++   M  + D V W ++      HG+   
Sbjct: 425 SSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLM 484

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK----- 450
           G+ A     +M       D  +++ +      A +  E  K  K M    V         
Sbjct: 485 GERAASKLLQMDPH----DSGIYVLLANMYGEAEMWKEAGKXRKLMRQRGVEKTPGCSSI 540

Query: 451 EIYGCVVDLLGRAG-------------RVKEAYELIKSMPFKP---DESVWGPLLGAC 492
           E+ G V + + R               ++    EL++  P  P   D S++G   G C
Sbjct: 541 EVNGIVYEFIVRDKSHPQSEQIYECLIQLTRQLELVECTPVFPIFGDNSLFGSDFGRC 598



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 113/240 (47%), Gaps = 3/240 (1%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108
           A  L  S  ++ ++     LFDEMP++DVV W  MI GY   N   +A  +F EM    +
Sbjct: 234 ARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNI 293

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
           NP+  T+ S L AC  + +L     +H    K  L  ++ +  +L+D+YA C   +  A 
Sbjct: 294 NPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCG-KITKAI 352

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            VF ++  +N ++WT +I+G A  GN +G +  F EM+   V  +  +F   + AC   G
Sbjct: 353 QVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGG 412

Query: 229 WVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLITWNTI 286
            V  G K       K      L   + ++D+  R   L +A +    M  E D + W  +
Sbjct: 413 LVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGAL 472



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 11/95 (11%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L T LI  Y   G I +A  +F E+P R+ ++WT +I+G       + A   F EM+ N 
Sbjct: 334 LGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNS 393

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEG 142
           V P+  T   +L AC            HG  ++EG
Sbjct: 394 VMPDEVTFLGLLSAC-----------CHGGLVEEG 417


>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 813

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 182/533 (34%), Positives = 305/533 (57%), Gaps = 5/533 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A  L+  Y   G +  AR LF+ MP+ D V+W  +IAGY      ++A  +F  M+   
Sbjct: 250 VANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAG 309

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           V P++ T +S L +     SL +   VH   ++  +   +Y++++L+DVY      ++ A
Sbjct: 310 VKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGG-DVEMA 368

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R +F      +    T +I+GY   G     +  F+ ++ EG+  N  + +  + ACA+ 
Sbjct: 369 RKIFQQNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAAV 428

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
             +  GK +H  ++K    + + V ++I DMY +   L  A ++F  M+++D + WN++I
Sbjct: 429 AALKPGKELHCHILKKRLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSDRDSVCWNSMI 488

Query: 288 AGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           + + ++G  E  +++F +M       +  + +S ++A A L AL  G+++H  ++R    
Sbjct: 489 SSFSQNGKPEIAIDLFRQMGMSGAKFDSVSLSSALSAAANLPALYYGKEMHGYVIRNAFS 548

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
            +  +A+ LIDMY+KCGN++ +  +F+ M  ++ V+W S++  YG HG  +E ++L+ EM
Sbjct: 549 SDTFVASTLIDMYSKCGNLALAWCVFNLMDGKNEVSWNSIIAAYGNHGCPRECLDLYHEM 608

Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGR 465
           +++G+ PD + F+ +++AC HAGLVDEG+ YF  M  +Y +    E Y C+VDL GRAGR
Sbjct: 609 LRAGIHPDHVTFLVIISACGHAGLVDEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGR 668

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525
           V EA++ IKSMPF PD  VWG LLGAC+ H    L KLA+  +L+L P   G Y++LSN+
Sbjct: 669 VHEAFDTIKSMPFTPDAGVWGTLLGACRLHGNVELAKLASRHLLELDPKNSGYYVLLSNV 728

Query: 526 YAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
           +A  G+W    K R +M+  G +K  G SWI+V      F A D  G+H + V
Sbjct: 729 HADAGEWASVLKVRSLMKEKGVQKIPGYSWIDVNGGTHMFSAAD--GNHPESV 779



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 128/452 (28%), Positives = 229/452 (50%), Gaps = 11/452 (2%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LIK Y D G I +AR +FDE+P RD + W VM+ GY      + A   F EM  +    N
Sbjct: 153 LIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVN 212

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
           + T + +L  C    +      +HG+ I  G E    V N+L+ +Y+ C  ++  AR +F
Sbjct: 213 SVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQVANTLVAMYSKCG-NLLYARKLF 271

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           N M   + V+W  LI GY  +G       +F  M+  GV+ +  +F+  + +   +G + 
Sbjct: 272 NTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLR 331

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
             K +H+ +++H    ++ + ++++D+Y +   +  A + F +    D+     +I+GY 
Sbjct: 332 HCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQQNILVDVAVCTAMISGYV 391

Query: 292 KSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
             G + + +N F  +  E    N  T  S++ ACA +AAL  G+++H  I+++ L+  + 
Sbjct: 392 LHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKPGKELHCHILKKRLENIVN 451

Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
           + +A+ DMYAKCG +  + + F  MSDRD V W SM+  +  +G  + AI+LF +M  SG
Sbjct: 452 VGSAITDMYAKCGRLDLAYEFFRRMSDRDSVCWNSMISSFSQNGKPEIAIDLFRQMGMSG 511

Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV----NPNKEIYGCVVDLLGRAGRV 466
            + D +   + L+A ++       L Y K M+ Y +    + +  +   ++D+  + G +
Sbjct: 512 AKFDSVSLSSALSAAANL----PALYYGKEMHGYVIRNAFSSDTFVASTLIDMYSKCGNL 567

Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLP 498
             A+ +   M  K +E  W  ++ A   H  P
Sbjct: 568 ALAWCVFNLMDGK-NEVSWNSIIAAYGNHGCP 598



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 119/443 (26%), Positives = 219/443 (49%), Gaps = 3/443 (0%)

Query: 60  GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119
           G   +A  LF E+  R  + W  MI G       + A   + +M+ + V+P+ +T   V+
Sbjct: 60  GRFRDAGNLFFELELRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVI 119

Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179
           KAC G+ ++    +VH  A   G    ++  ++L+ +YA      D AR VF+++  ++ 
Sbjct: 120 KACGGLNNVPLCMVVHDTARSLGFHVDLFAGSALIKLYADNGYIRD-ARRVFDELPLRDT 178

Query: 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAA 239
           + W  ++ GY  SG+    +G F EM      +N  +++  +  CA+ G    G  +H  
Sbjct: 179 ILWNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGL 238

Query: 240 VIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSEC 298
           VI  GF  +  V N+++ MY +   L  A + F+ M + D +TWN +IAGY ++G + E 
Sbjct: 239 VIGSGFEFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEA 298

Query: 299 LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDM 358
             +F+ M S    P+  TF S + +     +L   ++VH+ IVR  +  ++ L +ALID+
Sbjct: 299 APLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDV 358

Query: 359 YAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVF 418
           Y K G++  ++KIF +    D+   T+M+ GY  HG   +AI  F  +++ G+  + +  
Sbjct: 359 YFKGGDVEMARKIFQQNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTM 418

Query: 419 MAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPF 478
            +VL AC+    +  G +    +    +     +   + D+  + GR+  AYE  + M  
Sbjct: 419 ASVLPACAAVAALKPGKELHCHILKKRLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSD 478

Query: 479 KPDESVWGPLLGACKEHRLPNLG 501
           + D   W  ++ +  ++  P + 
Sbjct: 479 R-DSVCWNSMISSFSQNGKPEIA 500



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 179/366 (48%), Gaps = 10/366 (2%)

Query: 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM 174
           L S+ +AC     +  A  VH   I  G+       + ++ +Y  C    D   L F ++
Sbjct: 14  LESLFRACSDASMVQQARQVHTQVIVGGMGDVCAPSSRVLGLYVLCGRFRDAGNLFF-EL 72

Query: 175 KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGK 234
           + +  + W  +I G    G     L  + +ML   V  + Y+F   ++AC     V    
Sbjct: 73  ELRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCM 132

Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG 294
           ++H      GF  +L   ++++ +Y     + DA + FDE+  +D I WN ++ GY KSG
Sbjct: 133 VVHDTARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGYVKSG 192

Query: 295 SSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353
             +  +  F +M++     N  T+T I++ CAT      G Q+H  ++  G + +  +AN
Sbjct: 193 DFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQVAN 252

Query: 354 ALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP 413
            L+ MY+KCGN+  ++K+F+ M   D VTW  ++ GY  +G   EA  LF+ M+ +GV+P
Sbjct: 253 TLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKP 312

Query: 414 DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK--EIY--GCVVDLLGRAGRVKEA 469
           D + F + L +   +G     L++ K ++ Y V      ++Y    ++D+  + G V+ A
Sbjct: 313 DSVTFASFLPSILESG----SLRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMA 368

Query: 470 YELIKS 475
            ++ + 
Sbjct: 369 RKIFQQ 374



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 3/115 (2%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           + +A+ LI  Y   G +  A  +F+ M  ++ VSW  +IA Y +  C  +   ++ EM+R
Sbjct: 551 TFVASTLIDMYSKCGNLALAWCVFNLMDGKNEVSWNSIIAAYGNHGCPRECLDLYHEMLR 610

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAAL--VHGMAIKEGLEGSIYVENSLMDVYA 158
             ++P+  T   ++ AC G   L +  +   H M  + G+   +     ++D+Y 
Sbjct: 611 AGIHPDHVTFLVIISAC-GHAGLVDEGIHYFHCMTREYGIGARMEHYACMVDLYG 664


>gi|6729044|gb|AAF27040.1|AC009177_30 hypothetical protein [Arabidopsis thaliana]
          Length = 770

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 183/559 (32%), Positives = 305/559 (54%), Gaps = 4/559 (0%)

Query: 41  IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF 100
           I +   ++  +L+  Y   G + +A  LFDEMP RDV+S  ++  G+   N   ++  V 
Sbjct: 85  IHRNALVVWNSLLSLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLR-NRETESGFVL 143

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
           ++ +      +  TL+ VL  C   +      ++H +AI  G +  I V N L+  Y  C
Sbjct: 144 LKRMLGSGGFDHATLTIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKC 203

Query: 161 CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIA 220
             S+ + R VF+ M  +N ++ T +I+G   +     GL +F  M    V  N  ++  A
Sbjct: 204 GCSV-SGRGVFDGMSHRNVITLTAVISGLIENELHEDGLRLFSLMRRGLVHPNSVTYLSA 262

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           + AC+ +  +  G+ IHA + K+G  S L + ++++DMY +   + DA   F+  TE D 
Sbjct: 263 LAACSGSQRIVEGQQIHALLWKYGIESELCIESALMDMYSKCGSIEDAWTIFESTTEVDE 322

Query: 281 ITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           ++   I+ G  ++GS E  +  F +M       +    ++++       +L  G+Q+H+ 
Sbjct: 323 VSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAVLGVSFIDNSLGLGKQLHSL 382

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
           +++R   GN  + N LI+MY+KCG+++DSQ +F  M  R+ V+W SM+  +  HGHG  A
Sbjct: 383 VIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGHGLAA 442

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVD 458
           ++L++EM    V+P  + F+++L ACSH GL+D+G +    M + + + P  E Y C++D
Sbjct: 443 LKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGIEPRTEHYTCIID 502

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518
           +LGRAG +KEA   I S+P KPD  +W  LLGAC  H    +G+ AA ++    P+    
Sbjct: 503 MLGRAGLLKEAKSFIDSLPLKPDCKIWQALLGACSFHGDTEVGEYAAEQLFQTAPDSSSA 562

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
           +I+++NIY++ GKW+E AK  K M+ MG  KE G+S IE+  K   F+  DK+    + +
Sbjct: 563 HILIANIYSSRGKWKERAKTIKRMKAMGVTKETGISSIEIEHKTHSFVVEDKLHPQAEAI 622

Query: 579 YGVLEMLIRHMNETAYEPD 597
           Y VL  L   M +  Y PD
Sbjct: 623 YDVLSGLFPVMVDEGYRPD 641


>gi|255559100|ref|XP_002520572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540232|gb|EEF41805.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 695

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 192/557 (34%), Positives = 313/557 (56%), Gaps = 12/557 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           + ++ I  Y + G ++  R +FD   E+    W  MI G+   N   +   +F++ ++ E
Sbjct: 139 VVSSAISMYAELGCLDLCRKVFDSCLEKSAEVWNTMIGGHIQNNSFLEGVYLFLQAMKTE 198

Query: 108 VNP-NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
               +  T  S L A   ++ L     +H   +K     S+ V N+++ +Y+ C  S+  
Sbjct: 199 HTILDDVTFLSALTAVSQLQCLGLGQQMHAFTMKNHTVLSVTVLNAILVMYSRCN-SVQT 257

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
           +  VF  M  K+ VSW T+I+G+  +G    GL +  EM  +G   +  + +  + A ++
Sbjct: 258 SFEVFEKMPEKDVVSWNTMISGFIQNGLDEEGLMLVYEMQKQGFIADSVTVTSLLSAASN 317

Query: 227 TGWVSFGKLIHAAVIKHGFGSNLPVMNS-ILDMYCRFDCLSDANQYFDE--MTEKDLITW 283
                 GK  HA +I+HG       M+S ++DMY +   +  + + F+   +  +D  TW
Sbjct: 318 LRNREIGKQTHAYLIRHGI--KFDGMDSYLIDMYAKSGLIRISQRVFENNNIQNRDQATW 375

Query: 284 NTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           N +IAGY ++G  E     F  M  +   PN  T  SI+ AC++L +++ G+Q+H   +R
Sbjct: 376 NAVIAGYTQNGLVEQAFITFRLMLEQNLRPNAVTLASILPACSSLGSINLGKQLHGVSIR 435

Query: 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
             LD N+ +  AL+DMY+K G I+ ++ +F++ S+R+ VT+T+M++GYG HG G+ A+ L
Sbjct: 436 YSLDQNIFVRTALVDMYSKSGAINYAESVFTQSSERNSVTYTTMILGYGQHGMGENALSL 495

Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLG 461
           F  M KSG++PD I F+AVL+ACS+AGLVDEGL+ F+SM  D+ + P+   Y CV D+LG
Sbjct: 496 FHSMKKSGIQPDAITFVAVLSACSYAGLVDEGLRIFESMKRDFKIQPSTAHYCCVADMLG 555

Query: 462 RAGRVKEAYELIKSMPFKPDE-SVWGPLLGACKEHRLPNLGKLAALRVLDLKP--NMMGT 518
           R GRV EAYE +K +  +     +WG LLGAC+ H    LG+  + R+L++     + G 
Sbjct: 556 RVGRVIEAYEFVKQLGEEGHVIEIWGSLLGACRLHGHIELGEEVSNRLLEMNSVDRLAGY 615

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
            ++LSN+YA E  WE   K RK MR  G +KEVG SWI+    +  F++ DK  +  + +
Sbjct: 616 QVLLSNMYAEEANWETVDKLRKSMREKGLRKEVGCSWIDTGGLLVRFVSKDKDHTRCEEI 675

Query: 579 YGVLEMLIRHMNETAYE 595
           Y +LE L   M +  ++
Sbjct: 676 YEMLERLAMEMEDNDHK 692



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 115/409 (28%), Positives = 223/409 (54%), Gaps = 10/409 (2%)

Query: 68  LFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKS 127
           +F  M +RDV++W  M++ Y     + +A   F  M++  + P+  +  +V  A   +  
Sbjct: 56  VFKTMHKRDVIAWNTMVSWYVKTERYVEAIRQFRLMMKWGIKPSPVSFVNVFPAISSVGD 115

Query: 128 LSNAALVHGMAIKEGLE--GSIYVENSLMDVYATC-CISMDNARLVFNDMKWKNDVSWTT 184
             NA +++GM +K G E    ++V +S + +YA   C  +D  R VF+    K+   W T
Sbjct: 116 FKNANVLYGMLLKLGNEYANDLFVVSSAISMYAELGC--LDLCRKVFDSCLEKSAEVWNT 173

Query: 185 LITGYAHSGNGYGGLGVF-KEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH 243
           +I G+  + +   G+ +F + M  E   ++  +F  A+ A +    +  G+ +HA  +K+
Sbjct: 174 MIGGHIQNNSFLEGVYLFLQAMKTEHTILDDVTFLSALTAVSQLQCLGLGQQMHAFTMKN 233

Query: 244 GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMF 302
               ++ V+N+IL MY R + +  + + F++M EKD+++WNT+I+G+ ++G   E L + 
Sbjct: 234 HTVLSVTVLNAILVMYSRCNSVQTSFEVFEKMPEKDVVSWNTMISGFIQNGLDEEGLMLV 293

Query: 303 SKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362
            +M+ + F  +  T TS+++A + L     G+Q HA ++R G+  +  + + LIDMYAK 
Sbjct: 294 YEMQKQGFIADSVTVTSLLSAASNLRNREIGKQTHAYLIRHGIKFD-GMDSYLIDMYAKS 352

Query: 363 GNISDSQKIF--SEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420
           G I  SQ++F  + + +RD  TW +++ GY  +G  ++A   F  M++  +RP+ +   +
Sbjct: 353 GLIRISQRVFENNNIQNRDQATWNAVIAGYTQNGLVEQAFITFRLMLEQNLRPNAVTLAS 412

Query: 421 VLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
           +L ACS  G ++ G +       Y+++ N  +   +VD+  ++G +  A
Sbjct: 413 ILPACSSLGSINLGKQLHGVSIRYSLDQNIFVRTALVDMYSKSGAINYA 461



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 113/238 (47%), Gaps = 7/238 (2%)

Query: 269 NQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATL 327
           ++ F  M ++D+I WNT+++ Y K+    E +  F  M      P+  +F ++  A +++
Sbjct: 54  HKVFKTMHKRDVIAWNTMVSWYVKTERYVEAIRQFRLMMKWGIKPSPVSFVNVFPAISSV 113

Query: 328 AALSCGQQVHAGIVRRGLD--GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTS 385
                   ++  +++ G +   +L + ++ I MYA+ G +   +K+F    ++    W +
Sbjct: 114 GDFKNANVLYGMLLKLGNEYANDLFVVSSAISMYAELGCLDLCRKVFDSCLEKSAEVWNT 173

Query: 386 MMIGYGAHGHGKEAIELFDEMVKS-GVRPDRIVFMAVLTACSHAGLVDEGLKYFK-SMND 443
           M+ G+  +    E + LF + +K+     D + F++ LTA S    +  G +    +M +
Sbjct: 174 MIGGHIQNNSFLEGVYLFLQAMKTEHTILDDVTFLSALTAVSQLQCLGLGQQMHAFTMKN 233

Query: 444 YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLG 501
           + V  +  +   ++ +  R   V+ ++E+ + MP K D   W  ++    ++ L   G
Sbjct: 234 HTV-LSVTVLNAILVMYSRCNSVQTSFEVFEKMPEK-DVVSWNTMISGFIQNGLDEEG 289


>gi|357122034|ref|XP_003562721.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Brachypodium distachyon]
          Length = 689

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 203/591 (34%), Positives = 315/591 (53%), Gaps = 27/591 (4%)

Query: 7   LSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEAR 66
           L  AA   C    P +   LQS+   S  +D           A+ L+  Y   G + +AR
Sbjct: 98  LRSAAAARC----PALGAQLQSLAFKSGLADNVFA-------ASALLHMYAKCGRVRDAR 146

Query: 67  TLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMK 126
            +FD MPER+ VSW  +IAGY       QA  +F+ M    + P+  T +++L A     
Sbjct: 147 RVFDGMPERNTVSWNALIAGYVESGKVLQALELFINMETERLVPDEATFAALLTAFDD-- 204

Query: 127 SLSNAAL---VHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND-VSW 182
             SN  L   +HG  +K G    + V N+ +  Y+ C  ++  +R +F+ +    D +SW
Sbjct: 205 --SNYFLMHQLHGKIVKYGSALGLTVSNAAITAYSQCG-ALAESRRIFDQIGDSRDLISW 261

Query: 183 TTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
             ++  Y + G  Y  +G F  M+ E GV+++ YSF+  +  C        G+ IH  VI
Sbjct: 262 NAMLGAYTYHGMDYDAMGFFVRMIRESGVQLDMYSFTSIISTCPEHD-DHQGRAIHGLVI 320

Query: 242 KHGFGSNLPVMNSILDMYCRF--DCL-SDANQYFDEMTEKDLITWNTIIAGYEKSG-SSE 297
           K+G     PV N+++ MY R   +C+  DA + FD +  KD ++WN+++ GY +   S++
Sbjct: 321 KNGLEGATPVCNALIAMYTRISGNCMMEDACKCFDSLLIKDTVSWNSMLTGYSQHNLSAD 380

Query: 298 CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALID 357
            L  F  M+S     + + F++ + +C+ LA L  G+Q+H  I+  G   N  ++++LI 
Sbjct: 381 ALRFFRCMQSANIRCDEYAFSAALRSCSELAVLQLGRQIHGSIIHSGFASNNFVSSSLIF 440

Query: 358 MYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIV 417
           MY+K G + D++K F E      V W SM+ GY  HGH      LF+EMV+  V  D + 
Sbjct: 441 MYSKSGILDDAKKSFEEADKGSSVPWNSMIFGYAQHGHAHIVHSLFNEMVELKVPLDHVT 500

Query: 418 FMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
           F+ ++T+CSHAGLVDEG +   +M   Y +    E Y C VDL GRAG++++A ELI SM
Sbjct: 501 FVGLITSCSHAGLVDEGSEILNAMETRYGIPLRMEHYACGVDLYGRAGQLEKAKELIDSM 560

Query: 477 PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFA 536
           PF+PD  VW  LLGAC+ H    L    A  +L  +P    TYI+LS++Y+  G W + A
Sbjct: 561 PFEPDAMVWMTLLGACRIHGNMELASEVASHLLVSEPKQHSTYILLSSMYSGLGMWSDRA 620

Query: 537 KFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIR 587
             ++ M+  G  K  G SWIEV+++V  F A D+       +Y +L +L++
Sbjct: 621 IVQREMKNRGLSKVPGWSWIEVKNEVHSFNAEDRSHPRMDEIYEMLSLLLQ 671



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 117/414 (28%), Positives = 203/414 (49%), Gaps = 9/414 (2%)

Query: 62  IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121
           +  AR +FDE+P  D  SW  ++  + S   H  AW +   M    V  N F L S L++
Sbjct: 41  LAAARRVFDEIPRPDAASWNSLLTAHVSAGAHPAAWCLLRAMHAQGVAANTFALGSSLRS 100

Query: 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS 181
               +  +  A +  +A K GL  +++  ++L+ +YA C    D AR VF+ M  +N VS
Sbjct: 101 AAAARCPALGAQLQSLAFKSGLADNVFAASALLHMYAKCGRVRD-ARRVFDGMPERNTVS 159

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           W  LI GY  SG     L +F  M  E +  +  +F+  + A   + +    +L H  ++
Sbjct: 160 WNALIAGYVESGKVLQALELFINMETERLVPDEATFAALLTAFDDSNYFLMHQL-HGKIV 218

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE-KDLITWNTIIAGYEKSG-SSECL 299
           K+G    L V N+ +  Y +   L+++ + FD++ + +DLI+WN ++  Y   G   + +
Sbjct: 219 KYGSALGLTVSNAAITAYSQCGALAESRRIFDQIGDSRDLISWNAMLGAYTYHGMDYDAM 278

Query: 300 NMFSKMKSER-FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDM 358
             F +M  E     + ++FTSII+ C        G+ +H  +++ GL+G   + NALI M
Sbjct: 279 GFFVRMIRESGVQLDMYSFTSIISTCPEHDDHQ-GRAIHGLVIKNGLEGATPVCNALIAM 337

Query: 359 YAK-CGN--ISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           Y +  GN  + D+ K F  +  +D V+W SM+ GY  H    +A+  F  M  + +R D 
Sbjct: 338 YTRISGNCMMEDACKCFDSLLIKDTVSWNSMLTGYSQHNLSADALRFFRCMQSANIRCDE 397

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
             F A L +CS   ++  G +   S+       N  +   ++ +  ++G + +A
Sbjct: 398 YAFSAALRSCSELAVLQLGRQIHGSIIHSGFASNNFVSSSLIFMYSKSGILDDA 451



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 157/292 (53%), Gaps = 8/292 (2%)

Query: 151 NSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGV 210
           N L+  Y+   + +  AR VF+++   +  SW +L+T +  +G       + + M  +GV
Sbjct: 28  NQLLTAYSLSPLGLAAARRVFDEIPRPDAASWNSLLTAHVSAGAHPAAWCLLRAMHAQGV 87

Query: 211 EMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQ 270
             N ++   ++R+ A+    + G  + +   K G   N+   +++L MY +   + DA +
Sbjct: 88  AANTFALGSSLRSAAAARCPALGAQLQSLAFKSGLADNVFAASALLHMYAKCGRVRDARR 147

Query: 271 YFDEMTEKDLITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAA 329
            FD M E++ ++WN +IAGY +SG   + L +F  M++ER  P+  TF +++ A    + 
Sbjct: 148 VFDGMPERNTVSWNALIAGYVESGKVLQALELFINMETERLVPDEATFAALLTAFDD-SN 206

Query: 330 LSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD-RDLVTWTSMMI 388
                Q+H  IV+ G    L ++NA I  Y++CG +++S++IF ++ D RDL++W +M+ 
Sbjct: 207 YFLMHQLHGKIVKYGSALGLTVSNAAITAYSQCGALAESRRIFDQIGDSRDLISWNAMLG 266

Query: 389 GYGAHGHGKEAIELFDEMVK-SGVRPDRIVFMAVLTAC----SHAGLVDEGL 435
            Y  HG   +A+  F  M++ SGV+ D   F ++++ C     H G    GL
Sbjct: 267 AYTYHGMDYDAMGFFVRMIRESGVQLDMYSFTSIISTCPEHDDHQGRAIHGL 318


>gi|39546235|emb|CAE04244.3| OSJNBa0089N06.5 [Oryza sativa Japonica Group]
 gi|125549842|gb|EAY95664.1| hypothetical protein OsI_17530 [Oryza sativa Indica Group]
 gi|215686910|dbj|BAG90780.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 559

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 179/512 (34%), Positives = 300/512 (58%), Gaps = 4/512 (0%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L+T L+  Y   G +  AR +FD MP R VVSWT M++GY       +A  +F  M  + 
Sbjct: 49  LSTKLVIFYARFGDVAAARKVFDGMPHRSVVSWTAMVSGYARNGRPREALELFALMRASG 108

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
             PN FT  S   AC G     +   VH  A K    G ++V+++LMD++  C  S+++A
Sbjct: 109 ARPNQFTYGSAASACAGAGCARSGEQVHACAAKGRFAGDMFVQSALMDMHLRCG-SVEDA 167

Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
           R +F +M  K+ VSW  LI G+   G+    LG+F  ML E +  + Y+   A++AC   
Sbjct: 168 RQLFAEMGKKDVVSWNALIRGFVERGHDGDALGLFSSMLKEAMIPDHYTLGSALKACGIV 227

Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
           G     +LIH+ +IK G+     V+ S+++ Y +   +S A   +D ++E DL++   +I
Sbjct: 228 GVAVNVELIHSCIIKLGYWDEKVVIGSLINSYAKCRSMSSARVIYDSISEPDLVSSTALI 287

Query: 288 AGY--EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
           +GY  +++ S + + +F K+  +    +    +S++  CA++A+   G Q+HA + ++  
Sbjct: 288 SGYTMDRNYSEDAMELFCKIHRKGLWIDGVLLSSVLCLCASVASARFGTQIHAYMCKKQP 347

Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
            G++AL NAL+DMYAK G  SD+++ F EM  R++++WTS++   G +G G++A+ LF+ 
Sbjct: 348 MGDIALDNALVDMYAKAGEFSDAKRAFDEMPYRNVISWTSLITACGRNGSGEDAVTLFNR 407

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS-MNDYNVNPNKEIYGCVVDLLGRAG 464
           MV+ GVRP+ + F+++L+AC H GL ++G++YF S M+ Y ++P  E Y   +DLL R G
Sbjct: 408 MVEDGVRPNDVTFLSLLSACGHCGLTNKGMEYFTSMMSRYGIDPRAEHYSSAIDLLARGG 467

Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
           ++++A++L++    KP+ S+ G +LGACK H    LG+ AA  +  + P     Y +L+N
Sbjct: 468 QLEDAWKLVQKTNLKPNSSMLGAMLGACKLHGNMLLGETAAKNLFSIDPGSSVNYAVLAN 527

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWI 556
           +YA    WE+  + R+++      KEVG S I
Sbjct: 528 MYAECSLWEDAQRTREVIDETTDGKEVGFSVI 559



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 181/349 (51%), Gaps = 4/349 (1%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   + + L+  +   G +E+AR LF EM ++DVVSW  +I G+        A  +F  M
Sbjct: 146 GDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVVSWNALIRGFVERGHDGDALGLFSSM 205

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
           ++  + P+ +TL S LKAC  +    N  L+H   IK G      V  SL++ YA  C S
Sbjct: 206 LKEAMIPDHYTLGSALKACGIVGVAVNVELIHSCIIKLGYWDEKVVIGSLINSYAK-CRS 264

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGN-GYGGLGVFKEMLLEGVEMNPYSFSIAVR 222
           M +AR++++ +   + VS T LI+GY    N     + +F ++  +G+ ++    S  + 
Sbjct: 265 MSSARVIYDSISEPDLVSSTALISGYTMDRNYSEDAMELFCKIHRKGLWIDGVLLSSVLC 324

Query: 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282
            CAS     FG  IHA + K     ++ + N+++DMY +    SDA + FDEM  +++I+
Sbjct: 325 LCASVASARFGTQIHAYMCKKQPMGDIALDNALVDMYAKAGEFSDAKRAFDEMPYRNVIS 384

Query: 283 WNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           W ++I    ++GS E  + +F++M  +   PN  TF S+++AC      + G +    ++
Sbjct: 385 WTSLITACGRNGSGEDAVTLFNRMVEDGVRPNDVTFLSLLSACGHCGLTNKGMEYFTSMM 444

Query: 342 RR-GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIG 389
            R G+D      ++ ID+ A+ G + D+ K+  + + +   +    M+G
Sbjct: 445 SRYGIDPRAEHYSSAIDLLARGGQLEDAWKLVQKTNLKPNSSMLGAMLG 493



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 124/227 (54%), Gaps = 2/227 (0%)

Query: 206 LLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGS-NLPVMNSILDMYCRFDC 264
           LL G +     +S  ++ C S+     GK +H  V        +L +   ++  Y RF  
Sbjct: 3   LLMGAKPTAPLYSSLLQCCISSCAFRQGKSVHGRVAAASASPPDLHLSTKLVIFYARFGD 62

Query: 265 LSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAA 323
           ++ A + FD M  + +++W  +++GY ++G   E L +F+ M++    PN FT+ S  +A
Sbjct: 63  VAAARKVFDGMPHRSVVSWTAMVSGYARNGRPREALELFALMRASGARPNQFTYGSAASA 122

Query: 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTW 383
           CA       G+QVHA   +    G++ + +AL+DM+ +CG++ D++++F+EM  +D+V+W
Sbjct: 123 CAGAGCARSGEQVHACAAKGRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVVSW 182

Query: 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
            +++ G+   GH  +A+ LF  M+K  + PD     + L AC   G+
Sbjct: 183 NALIRGFVERGHDGDALGLFSSMLKEAMIPDHYTLGSALKACGIVGV 229



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 90/179 (50%), Gaps = 2/179 (1%)

Query: 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG-NLALANALIDMYAKCGNISDSQK 370
           P    ++S++  C +  A   G+ VH  +        +L L+  L+  YA+ G+++ ++K
Sbjct: 9   PTAPLYSSLLQCCISSCAFRQGKSVHGRVAAASASPPDLHLSTKLVIFYARFGDVAAARK 68

Query: 371 IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430
           +F  M  R +V+WT+M+ GY  +G  +EA+ELF  M  SG RP++  + +  +AC+ AG 
Sbjct: 69  VFDGMPHRSVVSWTAMVSGYARNGRPREALELFALMRASGARPNQFTYGSAASACAGAGC 128

Query: 431 VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
              G +            +  +   ++D+  R G V++A +L   M  K D   W  L+
Sbjct: 129 ARSGEQVHACAAKGRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMG-KKDVVSWNALI 186



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 42  PKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFV 101
           P G   L   L+  Y   G   +A+  FDEMP R+V+SWT +I           A T+F 
Sbjct: 347 PMGDIALDNALVDMYAKAGEFSDAKRAFDEMPYRNVISWTSLITACGRNGSGEDAVTLFN 406

Query: 102 EMVRNEVNPNAFTLSSVLKACKGMKSLSNAAL 133
            MV + V PN  T  S+L AC G   L+N  +
Sbjct: 407 RMVEDGVRPNDVTFLSLLSAC-GHCGLTNKGM 437


>gi|218191314|gb|EEC73741.1| hypothetical protein OsI_08374 [Oryza sativa Indica Group]
          Length = 667

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 189/524 (36%), Positives = 288/524 (54%), Gaps = 6/524 (1%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G + +   LI  Y   G +  A  +F  M  R VVSW  +IAG        +A  VF EM
Sbjct: 141 GDTYVQNALISMYMSCGDVGAAEAVFGAMRNRTVVSWNAVIAGCVKNGYAERALEVFGEM 200

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
             + V  +  T+ SVL AC   K L+    VH +   +GL   + V+N+L+D+Y  C  S
Sbjct: 201 AADGVGIDRATVVSVLPACAQAKDLNTGRAVHRLVEDKGLGDYVAVKNALIDMYGKC-RS 259

Query: 164 MDNARLVFNDMKWKNDV-SWTTLITGYAHSGNGYGGLGVFKEMLLEGVEM-NPYSFSIAV 221
           +++AR VF+  K   DV SWT +I  Y  +   +  + +  +ML+ G    N  +    +
Sbjct: 260 LEDARRVFDHCKHDKDVVSWTAMIGAYVLNDRAFEAISLGCQMLMSGAAWPNGVTMVYLL 319

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
            ACAS       K  HA  I+ G  S++ V  +++D Y R   +       +  + +   
Sbjct: 320 SACASMPSGKHAKCTHALCIRLGLKSDIAVETALIDAYARCGKMKLMRLTLERGSWRAE- 378

Query: 282 TWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           TWN  ++GY  SG   + + +F +M +E   P+  T  SI+ A A  A L  G+ +H  +
Sbjct: 379 TWNAALSGYTVSGREKKAIELFKRMIAESVRPDSATMASILPAYAESADLKEGKNIHCFL 438

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
           +  G   +  +A  LID+Y+K G++  +  +F  + ++D+V WT+++ GY  HGH + AI
Sbjct: 439 LTLGFLRSTEIATGLIDVYSKAGDLDAAWALFQWLPEKDVVAWTTIIAGYSIHGHARTAI 498

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDL 459
            L+D MV+SG +P+ +    +L ACSHAG++DEG+K FK M N + + PN E Y C+VD+
Sbjct: 499 LLYDRMVESGGKPNTVTIATLLYACSHAGMIDEGIKVFKDMRNVHGLMPNGEHYSCLVDM 558

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
           LGRAGR++EA+ LI+ MPF+P  SVWG LLGAC  H+    G++AA R+  L P   G+Y
Sbjct: 559 LGRAGRIEEAHRLIQDMPFEPSTSVWGALLGACVLHKNVEFGEVAAKRLFQLDPENTGSY 618

Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVC 563
           ++L NIYAA  +W +    R++M   G  KE G S +E R   C
Sbjct: 619 VLLGNIYAAADRWRDVQDVRRMMVERGLLKEPGSSLVEARSVQC 662



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 144/500 (28%), Positives = 234/500 (46%), Gaps = 18/500 (3%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWT-VMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
           L   Y   G    A  L  +MP+   VS++  ++  YT   CH +A  V+  M   +   
Sbjct: 51  LFMVYCACGRPSSAHNLLAQMPQPPPVSFSNSLLRSYTGLGCHREALAVYSAMRAFD--- 107

Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
              T     KAC G++   +   VH  A+  G  G  YV+N+L+ +Y +C   +  A  V
Sbjct: 108 -HLTFPFAAKACAGLRLGRHGRAVHCRALAAGFGGDTYVQNALISMYMSCG-DVGAAEAV 165

Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
           F  M+ +  VSW  +I G   +G     L VF EM  +GV ++  +    + ACA    +
Sbjct: 166 FGAMRNRTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQAKDL 225

Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLITWNTIIAG 289
           + G+ +H  V   G G  + V N+++DMY +   L DA + FD    +KD+++W  +I  
Sbjct: 226 NTGRAVHRLVEDKGLGDYVAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTAMIGA 285

Query: 290 YEKSGSS-ECLNMFSKM-KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347
           Y  +  + E +++  +M  S    PN  T   +++ACA++ +    +  HA  +R GL  
Sbjct: 286 YVLNDRAFEAISLGCQMLMSGAAWPNGVTMVYLLSACASMPSGKHAKCTHALCIRLGLKS 345

Query: 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
           ++A+  ALID YA+CG +   +      S R   TW + + GY   G  K+AIELF  M+
Sbjct: 346 DIAVETALIDAYARCGKMKLMRLTLERGSWR-AETWNAALSGYTVSGREKKAIELFKRMI 404

Query: 408 KSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467
              VRPD     ++L A + +  + EG      +       + EI   ++D+  +AG + 
Sbjct: 405 AESVRPDSATMASILPAYAESADLKEGKNIHCFLLTLGFLRSTEIATGLIDVYSKAGDLD 464

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDL--KPNMMGTYIILSNI 525
            A+ L + +P K D   W  ++     H       L   R+++   KPN   T  I + +
Sbjct: 465 AAWALFQWLPEK-DVVAWTTIIAGYSIHGHARTAILLYDRMVESGGKPN---TVTIATLL 520

Query: 526 YAAE--GKWEEFAKFRKIMR 543
           YA    G  +E  K  K MR
Sbjct: 521 YACSHAGMIDEGIKVFKDMR 540



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 119/242 (49%), Gaps = 6/242 (2%)

Query: 252 MNSILDMYCRFDCLSDANQYFDEMTEKDLITW-NTIIAGYEKSG-SSECLNMFSKMKSER 309
           ++ +  +YC     S A+    +M +   +++ N+++  Y   G   E L ++S M++  
Sbjct: 48  LHPLFMVYCACGRPSSAHNLLAQMPQPPPVSFSNSLLRSYTGLGCHREALAVYSAMRA-- 105

Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
           F    F F +   ACA L     G+ VH   +  G  G+  + NALI MY  CG++  ++
Sbjct: 106 FDHLTFPFAA--KACAGLRLGRHGRAVHCRALAAGFGGDTYVQNALISMYMSCGDVGAAE 163

Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
            +F  M +R +V+W +++ G   +G+ + A+E+F EM   GV  DR   ++VL AC+ A 
Sbjct: 164 AVFGAMRNRTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQAK 223

Query: 430 LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
            ++ G    + + D  +     +   ++D+ G+   +++A  +        D   W  ++
Sbjct: 224 DLNTGRAVHRLVEDKGLGDYVAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTAMI 283

Query: 490 GA 491
           GA
Sbjct: 284 GA 285


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 190/598 (31%), Positives = 318/598 (53%), Gaps = 48/598 (8%)

Query: 47  ILATNLIKSYF-DEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           ++ T ++  Y  D  +++ A   F+ M  R+  +W+ +IA  +     + A+ V+     
Sbjct: 259 VVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVY----- 313

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAI--KEGLEGSIYVENSLMDVYATCCIS 163
            + +P    L SV      +  L+    +    I   +  E ++   N+++  Y    + 
Sbjct: 314 -QRDP----LKSVPSRTSMLTGLARYGRIDDAKILFDQIHEPNVVSWNAMITGYMQNEM- 367

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           +D A  +FN M ++N +SW  +I GYA +G     L   + +  +G+  +  S + +  A
Sbjct: 368 VDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFA 427

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD---- 279
           C++   +  GK +H+  +K G   N  V N+++ +Y ++  +    Q FD MT KD    
Sbjct: 428 CSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSY 487

Query: 280 ---------------------------LITWNTIIAGYEKSGS-SECLNMFSKMKSERFS 311
                                      +++W TII+   ++   +E + +F  M  ER  
Sbjct: 488 NSFMSALVQNNLFDEARDVFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHEREL 547

Query: 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKI 371
           PN    T ++     L A   GQQ+H   ++ G+D  L +ANAL+ MY KC + +DS K+
Sbjct: 548 PNPPILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSS-ADSLKV 606

Query: 372 FSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLV 431
           F  M +RD+ TW +++ GY  HG G+EAI ++  MV +GV P+ + F+ +L ACSH+GLV
Sbjct: 607 FDSMEERDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLV 666

Query: 432 DEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490
           DEG ++FKSM+ DY + P  E Y C+VDLLGRAG V+ A   I  MP +PD  +W  LLG
Sbjct: 667 DEGHQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALLG 726

Query: 491 ACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKE 550
           ACK H+   +G+ AA ++  ++P+  G Y++LSNIY+++G W+E AK RK+M+  G  K+
Sbjct: 727 ACKIHKNVEIGRRAAEKLFSIEPSNAGNYVMLSNIYSSQGMWDEVAKVRKLMKERGVNKD 786

Query: 551 VGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
            G SW+++++K+  F+  D+     Q +Y  L  L   +  T Y PD D ++HD++ E
Sbjct: 787 PGCSWMQIKNKMHSFVTGDEEHEQIQNIYATLWELYTLLKATGYVPDTDFVLHDIDEE 844



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 118/415 (28%), Positives = 204/415 (49%), Gaps = 15/415 (3%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           ++  Y    L+EEAR LF+ MPER+ VSWTVMI+GY     H +AW +F  M+   + P 
Sbjct: 163 MLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMTPE 222

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
              L SVL A + +        +H +  K G E  + V  ++++ Y      +D+A   F
Sbjct: 223 QPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFF 282

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
             M  +N+ +W+T+I   + +G       V++   L+         S+  R    TG   
Sbjct: 283 EGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLK---------SVPSRTSMLTGLAR 333

Query: 232 FGKLIHAAVI-KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
           +G++  A ++       N+   N+++  Y + + + +A   F+ M  ++ I+W  +IAGY
Sbjct: 334 YGRIDDAKILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGY 393

Query: 291 EKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
            ++G SE  L     +  +   P+  + TS   AC+ + AL  G+QVH+  V+ G   N 
Sbjct: 394 ARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNS 453

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
            + NALI +Y K  +I   ++IF  M+ +D V++ S M     +    EA ++F+ M   
Sbjct: 454 YVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMPS- 512

Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
              PD + +  +++AC+ A   +E ++ F+SM      PN  I   ++ L G  G
Sbjct: 513 ---PDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPILTILLGLSGNLG 564



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 117/517 (22%), Positives = 211/517 (40%), Gaps = 79/517 (15%)

Query: 41  IPKGPSILATNL-IKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTV 99
           +P+ P   A +  I+     G + EAR +FD MP RD+++W  MI  Y +    +   ++
Sbjct: 27  VPRSPGTSAQSARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSL 86

Query: 100 FVEMVRNEVNPNAFTLSSVLKACK---------GMKSLSNAALVHGMAIKEGLEGSIYVE 150
              +    +      LS   +A +         GM  + N    + M       G I + 
Sbjct: 87  ADAISGGNLRTGTILLSGYARAGRVRDARRVFDGM-GVRNTVAWNAMVTCYVQNGDITLA 145

Query: 151 NSLMDVYATCCIS--------------MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGY 196
             L D   +  +S              M+ AR +F  M  +N VSWT +I+GY       
Sbjct: 146 RKLFDAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHG 205

Query: 197 GGLGVFKEMLLEGV---EMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMN 253
               +F+ ML EG+   + N  S   AVR     G +   + IH  V K GF  ++ V  
Sbjct: 206 RAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGIL---ESIHVLVHKTGFERDVVVGT 262

Query: 254 SILDMYCR-FDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSP 312
           +IL+ Y +  + L  A ++F+ M  ++  TW+TIIA   ++G  +  + F+  + +    
Sbjct: 263 AILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRID--DAFAVYQRDPLK- 319

Query: 313 NCFTFTSIIAACATLAALSCGQ----QVHAGIVRRGLDGNLALANALIDMYAKCGNISDS 368
           +  + TS++   A    +   +    Q+H        + N+   NA+I  Y +   + ++
Sbjct: 320 SVPSRTSMLTGLARYGRIDDAKILFDQIH--------EPNVVSWNAMITGYMQNEMVDEA 371

Query: 369 QKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHA 428
           + +F+ M  R+ ++W  M+ GY  +G  ++A+     + + G+ P      +   ACS+ 
Sbjct: 372 EDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNI 431

Query: 429 GLVDEG-------LKYFKSMNDYNVNPNKEIYG------------------------CVV 457
             ++ G       +K     N Y  N    +YG                          +
Sbjct: 432 EALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFM 491

Query: 458 DLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKE 494
             L +     EA ++  +MP  PD   W  ++ AC +
Sbjct: 492 SALVQNNLFDEARDVFNNMP-SPDVVSWTTIISACAQ 527



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 104/252 (41%), Gaps = 51/252 (20%)

Query: 261 RFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSI 320
           R   L +A + FD M  +D+I WN++I  Y  +G  +                       
Sbjct: 45  RLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPD----------------------- 81

Query: 321 IAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDL 380
             A  +LA    G             GNL     L+  YA+ G + D++++F  M  R+ 
Sbjct: 82  --AGRSLADAISG-------------GNLRTGTILLSGYARAGRVRDARRVFDGMGVRNT 126

Query: 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIV--FMAVLTACSHAGLVDEGLKYF 438
           V W +M+  Y  +G    A +LFD M      P R V  +  +LT   H+ L++E    F
Sbjct: 127 VAWNAMVTCYVQNGDITLARKLFDAM------PSRDVSSWNTMLTGYCHSQLMEEARNLF 180

Query: 439 KSMNDYN-VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRL 497
           + M + N V+    I G V  L+ + GR  + +  +      P++     +L A +    
Sbjct: 181 ERMPERNGVSWTVMISGYV--LIEQHGRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGK 238

Query: 498 PNLGKLAALRVL 509
           P  G L ++ VL
Sbjct: 239 P--GILESIHVL 248


>gi|302763819|ref|XP_002965331.1| hypothetical protein SELMODRAFT_82859 [Selaginella moellendorffii]
 gi|300167564|gb|EFJ34169.1| hypothetical protein SELMODRAFT_82859 [Selaginella moellendorffii]
          Length = 806

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 183/506 (36%), Positives = 289/506 (57%), Gaps = 10/506 (1%)

Query: 44  GPSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           G  +L  N LI  Y   G ++EA  +F +MP R+VVSWT MIA       ++ +  +F  
Sbjct: 281 GTRVLVLNALISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQTGHYSFSVKLFDG 340

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKS---LSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
           M+   +NPN  T +SV+ A   +     L     +H      G++    V+NSL+++YA 
Sbjct: 341 MIAEGINPNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPIVQNSLINMYAR 400

Query: 160 CCISMDNARLVFNDM--KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSF 217
             + +  AR VF+ +    K  VS+TT+I+ YAH+G+    L +F+EM   GV  N  +F
Sbjct: 401 SGL-LAEAREVFDSILENSKTVVSFTTMISAYAHNGHPRQALEIFREMTARGVAPNEITF 459

Query: 218 SIAVRACASTGWVSFGKLIHAAVIKHGFGSNLP-VMNSILDMYCRFDCLSDANQYFDEMT 276
           +  + AC + G ++ G  IH  +I+ G  S+ P   NS++DMY +   L  A + F+ M 
Sbjct: 460 ATVLAACVAIGDLASGAWIHERMIESGLDSSDPFAYNSLVDMYAKCGDLGFAARVFETMK 519

Query: 277 EKDLITWNTIIAGYEKSGSSEC-LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ 335
            KDL+ W TIIA   +SG++   L+++ +M      P+  T ++++ ACA L  L+ G++
Sbjct: 520 TKDLVAWTTIIAANVQSGNNRAALDLYDRMLQSGIHPDIATLSTLLVACANLGDLAMGEK 579

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
           +H   +R  L+ +    NAL  MYAKCG++  + +++      D+ TWTSM+  +   G 
Sbjct: 580 IHRQALRSKLEQDAHFQNALAAMYAKCGSLEKATRLYRRCRGSDVATWTSMLAAHSQQGL 639

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYG 454
              A+EL+ EM   GVRP+ + F+ VL +CS AGLV EG ++F S+ +DY   P+ E +G
Sbjct: 640 ASVALELYAEMESEGVRPNEVTFIPVLISCSQAGLVAEGREFFHSITSDYGSQPSAEHFG 699

Query: 455 CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514
           C+VD+LGRAG++++A EL+ SMPF PDE  W  LL +CK H    +G  AA  +L+L P 
Sbjct: 700 CMVDVLGRAGKLRDAEELLDSMPFYPDEIAWQSLLSSCKLHTDAEIGTRAAECLLELDPE 759

Query: 515 MMGTYIILSNIYAAEGKWEEFAKFRK 540
               ++ LS IYAA G+  +  + ++
Sbjct: 760 STSQFVALSQIYAAAGRNSDIDEIKR 785



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 124/463 (26%), Positives = 231/463 (49%), Gaps = 11/463 (2%)

Query: 46  SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           S + + L+  Y   G I+ A   FD+  E     W  +++       H +A  +F +M +
Sbjct: 185 SSIQSALVTMYAQCGRIDLAMAAFDDNRELGTAPWNAIMSALAGAGHHRRAIELFFQMEQ 244

Query: 106 NEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD 165
           ++ +    + +  L AC     L     +H     E     + V N+L+ +Y  C   +D
Sbjct: 245 HQCSDR--SCAIALGACAAAGHLRGGIQIHDKIQSEIHGTRVLVLNALISMYVRCG-KLD 301

Query: 166 NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
            A  VF DM  +N VSWT++I   A +G+    + +F  M+ EG+  N  +++  V A A
Sbjct: 302 EALRVFADMPHRNVVSWTSMIAAVAQTGHYSFSVKLFDGMIAEGINPNEKTYASVVSAIA 361

Query: 226 STGW---VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE--KDL 280
             G    +  G+ IH+ +   G  ++  V NS+++MY R   L++A + FD + E  K +
Sbjct: 362 HLGRDAILDRGRKIHSQITASGIDADPIVQNSLINMYARSGLLAEAREVFDSILENSKTV 421

Query: 281 ITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           +++ T+I+ Y  +G   + L +F +M +   +PN  TF +++AAC  +  L+ G  +H  
Sbjct: 422 VSFTTMISAYAHNGHPRQALEIFREMTARGVAPNEITFATVLAACVAIGDLASGAWIHER 481

Query: 340 IVRRGLDGNLALA-NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
           ++  GLD +   A N+L+DMYAKCG++  + ++F  M  +DLV WT+++      G+ + 
Sbjct: 482 MIESGLDSSDPFAYNSLVDMYAKCGDLGFAARVFETMKTKDLVAWTTIIAANVQSGNNRA 541

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVD 458
           A++L+D M++SG+ PD      +L AC++ G +  G K  +      +  +      +  
Sbjct: 542 ALDLYDRMLQSGIHPDIATLSTLLVACANLGDLAMGEKIHRQALRSKLEQDAHFQNALAA 601

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLG 501
           +  + G +++A  L +      D + W  +L A  +  L ++ 
Sbjct: 602 MYAKCGSLEKATRLYRRCR-GSDVATWTSMLAAHSQQGLASVA 643



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 118/437 (27%), Positives = 229/437 (52%), Gaps = 14/437 (3%)

Query: 63  EEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKAC 122
           + A  LFD MP+R    W V++  + + +       ++  M      P+A      + AC
Sbjct: 102 DTAIALFDAMPDRRPFCWNVLMKEFLAADRPRDTLELYRRMSVENTQPSACGFMWAIVAC 161

Query: 123 KGMKSLSNAALVH-GMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS 181
             +K L+    +H  +A   G+  SI  +++L+ +YA C   +D A   F+D +      
Sbjct: 162 GRIKDLAQGRSIHYRVATGRGINSSI--QSALVTMYAQCG-RIDLAMAAFDDNRELGTAP 218

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           W  +++  A +G+    + +F +M  E  + +  S +IA+ ACA+ G +  G  IH  + 
Sbjct: 219 WNAIMSALAGAGHHRRAIELFFQM--EQHQCSDRSCAIALGACAAAGHLRGGIQIHDKIQ 276

Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLN 300
               G+ + V+N+++ MY R   L +A + F +M  +++++W ++IA   ++G  S  + 
Sbjct: 277 SEIHGTRVLVLNALISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQTGHYSFSVK 336

Query: 301 MFSKMKSERFSPNCFTFTSIIAACATL---AALSCGQQVHAGIVRRGLDGNLALANALID 357
           +F  M +E  +PN  T+ S+++A A L   A L  G+++H+ I   G+D +  + N+LI+
Sbjct: 337 LFDGMIAEGINPNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPIVQNSLIN 396

Query: 358 MYAKCGNISDSQKIFSEM--SDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR 415
           MYA+ G +++++++F  +  + + +V++T+M+  Y  +GH ++A+E+F EM   GV P+ 
Sbjct: 397 MYARSGLLAEAREVFDSILENSKTVVSFTTMISAYAHNGHPRQALEIFREMTARGVAPNE 456

Query: 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEI-YGCVVDLLGRAGRVKEAYELIK 474
           I F  VL AC   G +  G    + M +  ++ +    Y  +VD+  + G +  A  + +
Sbjct: 457 ITFATVLAACVAIGDLASGAWIHERMIESGLDSSDPFAYNSLVDMYAKCGDLGFAARVFE 516

Query: 475 SMPFKPDESVWGPLLGA 491
           +M  K D   W  ++ A
Sbjct: 517 TMKTK-DLVAWTTIIAA 532



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 180/381 (47%), Gaps = 10/381 (2%)

Query: 101 VEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160
           ++ +R+         +++L+ C   ++L +   VH   +   L  +  +   +  +YA C
Sbjct: 39  LDKLRHRSTSQLLLYANLLRQCGNQRALDHGRRVHAHIVSRRLARNALLGELVFQMYARC 98

Query: 161 -CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
            C   D A  +F+ M  +    W  L+  +  +      L +++ M +E  + +   F  
Sbjct: 99  RCF--DTAIALFDAMPDRRPFCWNVLMKEFLAADRPRDTLELYRRMSVENTQPSACGFMW 156

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
           A+ AC     ++ G+ IH  V   G G N  + ++++ MY +   +  A   FD+  E  
Sbjct: 157 AIVACGRIKDLAQGRSIHYRVAT-GRGINSSIQSALVTMYAQCGRIDLAMAAFDDNRELG 215

Query: 280 LITWNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
              WN I++    +G     + +F +M+  + S    +    + ACA    L  G Q+H 
Sbjct: 216 TAPWNAIMSALAGAGHHRRAIELFFQMEQHQCSDR--SCAIALGACAAAGHLRGGIQIHD 273

Query: 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKE 398
            I        + + NALI MY +CG + ++ ++F++M  R++V+WTSM+      GH   
Sbjct: 274 KIQSEIHGTRVLVLNALISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQTGHYSF 333

Query: 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAG---LVDEGLKYFKSMNDYNVNPNKEIYGC 455
           +++LFD M+  G+ P+   + +V++A +H G   ++D G K    +    ++ +  +   
Sbjct: 334 SVKLFDGMIAEGINPNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPIVQNS 393

Query: 456 VVDLLGRAGRVKEAYELIKSM 476
           ++++  R+G + EA E+  S+
Sbjct: 394 LINMYARSGLLAEAREVFDSI 414


>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Brachypodium distachyon]
          Length = 1054

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 193/566 (34%), Positives = 318/566 (56%), Gaps = 13/566 (2%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           L+  L+  Y   G I++A  +F  +  RD VSW  +I+          A   +  M +  
Sbjct: 412 LSNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIISVLDQNGFCEGAMMNYCMMRQGC 471

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
           ++P+ F   S L +C  ++ L+    VH  A+K GL+    V N+L+ +Y  C    ++ 
Sbjct: 472 ISPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDCGARSESW 531

Query: 168 RLVFNDMKWKNDVSWTT----LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
             +FN M   + VSW +    +++ +A +      + VF  M+  G+  N  +F   + A
Sbjct: 532 E-IFNSMAEHDIVSWNSIMGVMVSSHAPTAES---VEVFSNMMRSGLTPNKVTFVNLLSA 587

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT-EKDLIT 282
            +    +  GK +HA V+KHG   +  V N+++  Y +   +    Q F  M+  +D ++
Sbjct: 588 LSPLSVLELGKQVHAVVLKHGAIEDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAVS 647

Query: 283 WNTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
           WN++I+GY  +G   E ++    M       +C TF+ ++ ACA++AAL  G ++HA  +
Sbjct: 648 WNSMISGYIYNGHLQETMDCVWLMMHSNQMLDCCTFSIVLNACASVAALERGMEMHAFGI 707

Query: 342 RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401
           R  L+ ++ + +AL+DMY+KCG I  + K+F+ MS ++  +W SM+ GY  HG G++A+E
Sbjct: 708 RSQLESDVVVESALLDMYSKCGRIDYASKVFNSMSQKNEFSWNSMISGYARHGLGEKALE 767

Query: 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461
           +F+EM ++G  PD + F++VL+ACSHAGLVD GL YF+ M D+ + P+ E Y CV+DLLG
Sbjct: 768 IFEEMQRNGACPDHVTFVSVLSACSHAGLVDRGLDYFEMMEDHGILPHIEHYSCVIDLLG 827

Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR---LPNLGKLAALRVLDLKPNMMGT 518
           RAG++ +  E I  MP KP+  +W  +L AC++ +     +LGK A+  +L+L+P     
Sbjct: 828 RAGKLLKIQEYINRMPMKPNTLIWRTVLVACRQSKDGDRIDLGKEASRMLLELEPQNPVN 887

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
           Y++ SN YAA G+WE+ AK R  M G   KKE G SW+ + D V  FIA D+   +T+ +
Sbjct: 888 YVLASNFYAATGRWEDTAKARAAMGGAAMKKEAGQSWVTLGDGVHTFIAGDRSHPNTKEI 947

Query: 579 YGVLEMLIRHMNETAYEPDIDCLIHD 604
           Y  L  LI+ +    Y P  +  ++D
Sbjct: 948 YEKLNFLIQKIKNAGYVPMTEFALYD 973



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 129/471 (27%), Positives = 230/471 (48%), Gaps = 21/471 (4%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV-- 104
            L+ +L+  Y     +  AR +FD M ER+ VSWT +++GY      ++A+ VF  M+  
Sbjct: 92  FLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLSGITDEAFRVFKAMLWE 151

Query: 105 -RNEVNPNAFTLSSVLKACK--GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
                 P  FT  SVL+AC+  G   L+ A  VHG+  K     +  V N+L+ +Y  C 
Sbjct: 152 GSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYASNTTVCNALISMYGNCS 211

Query: 162 ISMD-NARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE--GVEMNP--YS 216
           + +   A+ VF+    ++ ++W  L++ YA  G       +F  ML +   +E+ P  ++
Sbjct: 212 VGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMAMLHDDSAIELRPNEHT 271

Query: 217 FSIAVRACASTGWVSFGKL--IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE 274
           F   + A  S    S G L  + A V+K G  S+L V ++++  + R   L +A   F  
Sbjct: 272 FGSLITA-TSLSSCSSGVLDQVFARVLKSGSSSDLYVGSALVSAFARHGMLDEAKDIFIN 330

Query: 275 MTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLA----A 329
           + E++ +T N +I G  K   S E + +F   + + F  N  TF  +++A A  +     
Sbjct: 331 LKERNAVTLNGLIVGLVKQHCSEEAVGIFMGTR-DSFVVNTDTFVVLLSAVAEFSIPEDG 389

Query: 330 LSCGQQVHAGIVRRGL-DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMI 388
           L  G++VH  I+R GL D  +AL+N L++MYAKCG I  + ++F  +  RD V+W +++ 
Sbjct: 390 LMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIIS 449

Query: 389 GYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP 448
               +G  + A+  +  M +  + P     ++ L++C+   L+  G +       + ++ 
Sbjct: 450 VLDQNGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDL 509

Query: 449 NKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN 499
           +  +   +V + G  G   E++E+  SM  + D   W  ++G       P 
Sbjct: 510 DTSVSNALVKMYGDCGARSESWEIFNSMA-EHDIVSWNSIMGVMVSSHAPT 559



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/320 (30%), Positives = 163/320 (50%), Gaps = 25/320 (7%)

Query: 134 VHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSG 193
           +H   +K GL   +++ N L+++YA     +  AR VF+ M  +N VSWT L++GY  SG
Sbjct: 78  LHLELVKRGLTHDLFLSNHLVNLYAKGS-RLAAARQVFDGMLERNAVSWTCLVSGYVLSG 136

Query: 194 NGYGGLGVFKEMLLEGVEMN---PYSFSIAVRACASTG--WVSFGKLIHAAVIKHGFGSN 248
                  VFK ML EG E +   P++F   +RAC   G   ++F   +H  V K  + SN
Sbjct: 137 ITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYASN 196

Query: 249 LPVMNSILDMY--CRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKM 305
             V N+++ MY  C       A Q FD    +DLITWN +++ Y K G       +F  M
Sbjct: 197 TTVCNALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMAM 256

Query: 306 KSE----RFSPNCFTFTSIIAACATLAALSCG--QQVHAGIVRRGLDGNLALANALIDMY 359
             +       PN  TF S+I A  +L++ S G   QV A +++ G   +L + +AL+  +
Sbjct: 257 LHDDSAIELRPNEHTFGSLITA-TSLSSCSSGVLDQVFARVLKSGSSSDLYVGSALVSAF 315

Query: 360 AKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIV-- 417
           A+ G + +++ IF  + +R+ VT   +++G       +EA+ +F      G R   +V  
Sbjct: 316 ARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIF-----MGTRDSFVVNT 370

Query: 418 --FMAVLTACSHAGLVDEGL 435
             F+ +L+A +   + ++GL
Sbjct: 371 DTFVVLLSAVAEFSIPEDGL 390



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 134/276 (48%), Gaps = 19/276 (6%)

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG- 294
           +H  ++K G   +L + N ++++Y +   L+ A Q FD M E++ ++W  +++GY  SG 
Sbjct: 78  LHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLSGI 137

Query: 295 SSECLNMFSKM---KSERFSPNCFTFTSIIAAC--ATLAALSCGQQVHAGIVRRGLDGNL 349
           + E   +F  M    SE   P  FTF S++ AC  A    L+   QVH  + +     N 
Sbjct: 138 TDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYASNT 197

Query: 350 ALANALIDMYAKC--GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407
            + NALI MY  C  G    +Q++F     RDL+TW ++M  Y   G+      LF  M+
Sbjct: 198 TVCNALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMAML 257

Query: 408 KSG----VRPDRIVFMAVLTACS----HAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL 459
                  +RP+   F +++TA S     +G++D+    F  +     + +  +   +V  
Sbjct: 258 HDDSAIELRPNEHTFGSLITATSLSSCSSGVLDQ---VFARVLKSGSSSDLYVGSALVSA 314

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
             R G + EA ++  ++  +   ++ G ++G  K+H
Sbjct: 315 FARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQH 350



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 59/99 (59%), Gaps = 3/99 (3%)

Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
           +++H  +V+RGL  +L L+N L+++YAK   ++ ++++F  M +R+ V+WT ++ GY   
Sbjct: 76  ERLHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLS 135

Query: 394 GHGKEAIELFDEMVKSG---VRPDRIVFMAVLTACSHAG 429
           G   EA  +F  M+  G    RP    F +VL AC  AG
Sbjct: 136 GITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAG 174



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 6/186 (3%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           ++ + L+  Y   G I+ A  +F+ M +++  SW  MI+GY       +A  +F EM RN
Sbjct: 716 VVESALLDMYSKCGRIDYASKVFNSMSQKNEFSWNSMISGYARHGLGEKALEIFEEMQRN 775

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
              P+  T  SVL AC     +        M    G+   I   + ++D+       +  
Sbjct: 776 GACPDHVTFVSVLSACSHAGLVDRGLDYFEMMEDHGILPHIEHYSCVIDLLGRAG-KLLK 834

Query: 167 ARLVFNDMKWK-NDVSWTTLITGYAHSGNGYGGLGVFKE---MLLEGVEMNPYSFSIAVR 222
            +   N M  K N + W T++     S +G   + + KE   MLLE    NP ++ +A  
Sbjct: 835 IQEYINRMPMKPNTLIWRTVLVACRQSKDG-DRIDLGKEASRMLLELEPQNPVNYVLASN 893

Query: 223 ACASTG 228
             A+TG
Sbjct: 894 FYAATG 899


>gi|15231798|ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53360, mitochondrial; Flags: Precursor
 gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis thaliana]
 gi|332645554|gb|AEE79075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 195/556 (35%), Positives = 301/556 (54%), Gaps = 22/556 (3%)

Query: 47  ILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105
           ++A N LI  Y     + +A  +F  +P +D++SW+ +IAG++      +A +   EM+ 
Sbjct: 203 LIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLS 262

Query: 106 NEV-NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
             V +PN +   S LKAC  +      + +HG+ IK  L G+     SL D+YA C   +
Sbjct: 263 FGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGF-L 321

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
           ++AR VF+ ++  +  SW  +I G A++G     + VF +M   G    P + S+    C
Sbjct: 322 NSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSG--FIPDAISLRSLLC 379

Query: 225 ASTG--WVSFGKLIHAAVIKHGFGSNLPVMNSIL-------DMYCRFDCLSDANQYFDEM 275
           A T    +S G  IH+ +IK GF ++L V NS+L       D+YC F      N + D  
Sbjct: 380 AQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCF------NLFEDFR 433

Query: 276 TEKDLITWNTII-AGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334
              D ++WNTI+ A  +     E L +F  M      P+  T  +++  C  +++L  G 
Sbjct: 434 NNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGS 493

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
           QVH   ++ GL     + N LIDMYAKCG++  +++IF  M +RD+V+W+++++GY   G
Sbjct: 494 QVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSG 553

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIY 453
            G+EA+ LF EM  +G+ P+ + F+ VLTACSH GLV+EGLK + +M  ++ ++P KE  
Sbjct: 554 FGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHC 613

Query: 454 GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513
            CVVDLL RAGR+ EA   I  M  +PD  VW  LL ACK     +L + AA  +L + P
Sbjct: 614 SCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAAENILKIDP 673

Query: 514 NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGS 573
                +++L +++A+ G WE  A  R  M+    KK  G SWIE+ DK+  F A D    
Sbjct: 674 FNSTAHVLLCSMHASSGNWENAALLRSSMKKHDVKKIPGQSWIEIEDKIHIFFAEDIFHP 733

Query: 574 HTQYVYGVLEMLIRHM 589
               +Y VL  +   M
Sbjct: 734 ERDDIYTVLHNIWSQM 749



 Score =  205 bits (521), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 128/450 (28%), Positives = 225/450 (50%), Gaps = 5/450 (1%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           K  +IL  +++  Y   G + +AR +FD MPER++VS+T +I GY+      +A  ++++
Sbjct: 99  KYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLK 158

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162
           M++ ++ P+ F   S++KAC     +     +H   IK      +  +N+L+ +Y     
Sbjct: 159 MLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFN- 217

Query: 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGV-EMNPYSFSIAV 221
            M +A  VF  +  K+ +SW+++I G++  G  +  L   KEML  GV   N Y F  ++
Sbjct: 218 QMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSL 277

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
           +AC+S     +G  IH   IK     N     S+ DMY R   L+ A + FD++   D  
Sbjct: 278 KACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTA 337

Query: 282 TWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           +WN IIAG   +G + E +++FS+M+S  F P+  +  S++ A     ALS G Q+H+ I
Sbjct: 338 SWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYI 397

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEM-SDRDLVTWTSMMIGYGAHGHGKEA 399
           ++ G   +L + N+L+ MY  C ++     +F +  ++ D V+W +++     H    E 
Sbjct: 398 IKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEM 457

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL 459
           + LF  M+ S   PD I    +L  C     +  G +         + P + I   ++D+
Sbjct: 458 LRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDM 517

Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLL 489
             + G + +A  +  SM  + D   W  L+
Sbjct: 518 YAKCGSLGQARRIFDSMDNR-DVVSWSTLI 546



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 113/387 (29%), Positives = 205/387 (52%), Gaps = 3/387 (0%)

Query: 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFND 173
           T  S++ AC   +SL+    +H   +    +    + N ++ +Y  C  S+ +AR VF+ 
Sbjct: 69  TYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCG-SLRDAREVFDF 127

Query: 174 MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG 233
           M  +N VS+T++ITGY+ +G G   + ++ +ML E +  + ++F   ++ACAS+  V  G
Sbjct: 128 MPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLG 187

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
           K +HA VIK    S+L   N+++ MY RF+ +SDA++ F  +  KDLI+W++IIAG+ + 
Sbjct: 188 KQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQL 247

Query: 294 G-SSECLNMFSKMKS-ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLAL 351
           G   E L+   +M S   F PN + F S + AC++L     G Q+H   ++  L GN   
Sbjct: 248 GFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIA 307

Query: 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411
             +L DMYA+CG ++ ++++F ++   D  +W  ++ G   +G+  EA+ +F +M  SG 
Sbjct: 308 GCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGF 367

Query: 412 RPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471
            PD I   ++L A +    + +G++    +  +    +  +   ++ +      +   + 
Sbjct: 368 IPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFN 427

Query: 472 LIKSMPFKPDESVWGPLLGACKEHRLP 498
           L +      D   W  +L AC +H  P
Sbjct: 428 LFEDFRNNADSVSWNTILTACLQHEQP 454



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 128/264 (48%), Gaps = 42/264 (15%)

Query: 306 KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNI 365
           K+  F     T+ S+I AC++  +L+ G+++H  I+      +  L N ++ MY KCG++
Sbjct: 59  KNSSFKIRLRTYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSL 118

Query: 366 SDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTAC 425
            D++++F  M +R+LV++TS++ GY  +G G EAI L+ +M++  + PD+  F +++ AC
Sbjct: 119 RDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKAC 178

Query: 426 SHAGLVDEGLKY-------------------------FKSMND-----YNVNPNKEI--Y 453
           + +  V  G +                          F  M+D     Y + P K++  +
Sbjct: 179 ASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGI-PMKDLISW 237

Query: 454 GCVVDLLGRAGRVKEAYELIKSM----PFKPDESVWGPLLGACKEHRLPNLGKLAALRVL 509
             ++    + G   EA   +K M     F P+E ++G  L AC     P+ G  + +  L
Sbjct: 238 SSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYG--SQIHGL 295

Query: 510 DLKPNMMGTYII---LSNIYAAEG 530
            +K  + G  I    L ++YA  G
Sbjct: 296 CIKSELAGNAIAGCSLCDMYARCG 319


>gi|255577487|ref|XP_002529622.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530907|gb|EEF32767.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 752

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 181/547 (33%), Positives = 303/547 (55%), Gaps = 5/547 (0%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
            + T+LI  Y   G  + A  +FD M  +D+     MI  Y       +A  VF  ++ +
Sbjct: 204 FVGTSLIAMYTKSGFFDVAEKVFDSMGFKDIRCLNFMILEYGRAGNGGKAIEVFKNLLND 263

Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
              P  +T ++++  C G   +     + G+A K G      V N+++ +Y    +  + 
Sbjct: 264 GFEPTDYTFTNIISTCNGDLGVEEGKQLQGLAFKYGFLSETSVGNAIITMYGNSGMPKEA 323

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE-GVEMNPYSFSIAVRACA 225
            R+ F+ M  KN +SWT LI+GY+ SG G   +  F  +  E G+  +    +  +  C+
Sbjct: 324 ERM-FSSMSEKNLISWTALISGYSRSGYGKKAVDAFLGLHDELGINFDSTLLTAILDCCS 382

Query: 226 STGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNT 285
               +  G  IH  V+K G   ++ V  +++D+Y + + L  A   FD ++ K + ++N 
Sbjct: 383 DCNNLELGLQIHGFVMKLGCACDVNVATALVDLYAKCEKLQSARIVFDHLSNKGIASFNA 442

Query: 286 IIAGY-EKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
           I+AG+ E SG  E  + +F++++     P+  TF+ +++  A  A+L  G+  HA  V+ 
Sbjct: 443 ILAGFLESSGDEEDPMILFNQLRLAGVKPDMVTFSRLLSLLANQASLEKGRSFHAYTVKT 502

Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
           G D N+++AN++I MYAKCG+I D+ ++F+ M+ RD ++W +++  Y  HG  ++++ LF
Sbjct: 503 GFDTNISVANSVISMYAKCGSIEDAHQMFNIMNCRDSISWNALISAYALHGQAQKSLFLF 562

Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGR 462
           +EM + G  PD    +A+L AC+++GL  +G+  F  M   Y + P  E Y C+ DLLGR
Sbjct: 563 EEMKRKGFDPDEFTILAILQACTYSGLWKDGICLFNLMEPKYGIKPLLEHYACMADLLGR 622

Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
           AG + EA ++IK  PF     +W  L+  CK H   N GKLA+  +LDL P   G+YI++
Sbjct: 623 AGYLSEAMDIIKRSPFPKSTLLWRTLVNVCKLHGNLNFGKLASKHLLDLSPVEAGSYILV 682

Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
           SN+YA+E   +E AK RK+M  +  +KE G SWIE+ +KV  F+A+DK    ++ +Y  L
Sbjct: 683 SNMYASEKMSDEAAKVRKVMNDLKFRKEAGSSWIEIDNKVHHFVASDKDHPESREIYTRL 742

Query: 583 EMLIRHM 589
           E+L   M
Sbjct: 743 ELLTDEM 749



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 115/450 (25%), Positives = 226/450 (50%), Gaps = 5/450 (1%)

Query: 49  ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108
             N++  Y     ++ A+ +FD M  R+ ++WT +I GY   N    A+++  +M +   
Sbjct: 105 GNNVLNLYVKFNRLDLAQKVFDRMRTRNTITWTSLIKGYLEDNDFQSAFSIAGDMHKFGE 164

Query: 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNAR 168
           N N  T + +L+AC           +H   IK G + +++V  SL+ +Y       D A 
Sbjct: 165 NFNEHTCTVILQACSSPDDRILGEQIHCFVIKSGFDENVFVGTSLIAMYTKSGF-FDVAE 223

Query: 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228
            VF+ M +K+      +I  Y  +GNG   + VFK +L +G E   Y+F+  +  C    
Sbjct: 224 KVFDSMGFKDIRCLNFMILEYGRAGNGGKAIEVFKNLLNDGFEPTDYTFTNIISTCNGDL 283

Query: 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIA 288
            V  GK +     K+GF S   V N+I+ MY       +A + F  M+EK+LI+W  +I+
Sbjct: 284 GVEEGKQLQGLAFKYGFLSETSVGNAIITMYGNSGMPKEAERMFSSMSEKNLISWTALIS 343

Query: 289 GYEKSG-SSECLNMFSKMKSER-FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
           GY +SG   + ++ F  +  E   + +    T+I+  C+    L  G Q+H  +++ G  
Sbjct: 344 GYSRSGYGKKAVDAFLGLHDELGINFDSTLLTAILDCCSDCNNLELGLQIHGFVMKLGCA 403

Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY-GAHGHGKEAIELFDE 405
            ++ +A AL+D+YAKC  +  ++ +F  +S++ + ++ +++ G+  + G  ++ + LF++
Sbjct: 404 CDVNVATALVDLYAKCEKLQSARIVFDHLSNKGIASFNAILAGFLESSGDEEDPMILFNQ 463

Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465
           +  +GV+PD + F  +L+  ++   +++G  +         + N  +   V+ +  + G 
Sbjct: 464 LRLAGVKPDMVTFSRLLSLLANQASLEKGRSFHAYTVKTGFDTNISVANSVISMYAKCGS 523

Query: 466 VKEAYELIKSMPFKPDESVWGPLLGACKEH 495
           +++A+++   M  + D   W  L+ A   H
Sbjct: 524 IEDAHQMFNIMNCR-DSISWNALISAYALH 552



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 115/461 (24%), Positives = 225/461 (48%), Gaps = 17/461 (3%)

Query: 118 VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK 177
           ++K   G +       VH   +K G +   +  N+++++Y      +D A+ VF+ M+ +
Sbjct: 73  LIKISIGSRDFLLGQAVHSYLVKAGSQDDTFKGNNVLNLYVKFN-RLDLAQKVFDRMRTR 131

Query: 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIH 237
           N ++WT+LI GY    +      +  +M   G   N ++ ++ ++AC+S      G+ IH
Sbjct: 132 NTITWTSLIKGYLEDNDFQSAFSIAGDMHKFGENFNEHTCTVILQACSSPDDRILGEQIH 191

Query: 238 AAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-S 296
             VIK GF  N+ V  S++ MY +      A + FD M  KD+   N +I  Y ++G+  
Sbjct: 192 CFVIKSGFDENVFVGTSLIAMYTKSGFFDVAEKVFDSMGFKDIRCLNFMILEYGRAGNGG 251

Query: 297 ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALI 356
           + + +F  + ++ F P  +TFT+II+ C     +  G+Q+     + G     ++ NA+I
Sbjct: 252 KAIEVFKNLLNDGFEPTDYTFTNIISTCNGDLGVEEGKQLQGLAFKYGFLSETSVGNAII 311

Query: 357 DMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF----DEMVKSGVR 412
            MY   G   +++++FS MS+++L++WT+++ GY   G+GK+A++ F    DE+   G+ 
Sbjct: 312 TMYGNSGMPKEAERMFSSMSEKNLISWTALISGYSRSGYGKKAVDAFLGLHDEL---GIN 368

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA--- 469
            D  +  A+L  CS    ++ GL+    +       +  +   +VDL  +  +++ A   
Sbjct: 369 FDSTLLTAILDCCSDCNNLELGLQIHGFVMKLGCACDVNVATALVDLYAKCEKLQSARIV 428

Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529
           ++ + +       ++    L +  +   P +     LR+  +KP+M+ T+  L ++ A +
Sbjct: 429 FDHLSNKGIASFNAILAGFLESSGDEEDPMI-LFNQLRLAGVKPDMV-TFSRLLSLLANQ 486

Query: 530 GKWEEFAKFR--KIMRGMGSKKEVGMSWIEVRDKVCGFIAN 568
              E+   F    +  G  +   V  S I +  K CG I +
Sbjct: 487 ASLEKGRSFHAYTVKTGFDTNISVANSVISMYAK-CGSIED 526


>gi|357446017|ref|XP_003593286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355482334|gb|AES63537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 622

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 179/519 (34%), Positives = 303/519 (58%), Gaps = 9/519 (1%)

Query: 47  ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
           I++ ++I  Y     IE AR +FD MP RD ++W  MI  Y       +A  +  +    
Sbjct: 102 IVSNSIISMYAKFFDIESARQVFDTMPHRDTITWNSMINAYLQNGLLVEALQMLKDFYFL 161

Query: 107 EVNPNAFTLSSVLKACKGMKSLS--NAALVHGMAIKEG---LEGSIYVENSLMDVYATCC 161
              P    L+S++  C     L       +HG+ + +G   ++ S+++  + +D Y  C 
Sbjct: 162 GFLPKPELLASMVSMCGREMDLGWRIGRQIHGLVVVDGRIRIQHSVFLSTAFVDFYFRCG 221

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221
            S+  AR VF++M+ KN+VSWT +I+G A++ +    L  ++EM +EGV  N  +    +
Sbjct: 222 DSL-MARSVFDEMEVKNEVSWTAVISGCANNQDYDVALACYREMQVEGVSPNRVTLIALL 280

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRF-DCLSDANQYFDEMTEKDL 280
            ACA  G+V +GK IH    + GF S      +++ +YC     L  A + F+  + +D+
Sbjct: 281 AACARPGFVKYGKEIHGYAFRRGFDSCHSFSPALIYLYCECGQSLHLAERIFEGSSLRDV 340

Query: 281 ITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           + W++II  Y + G S+  L +F+KM++E   PN  T  ++I+AC  L++   G  +H  
Sbjct: 341 VLWSSIIGSYARRGESDKALKLFNKMRTEETEPNYVTLLAVISACTNLSSFKHGGVIHGY 400

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
           I++ G+  ++ + NALI+MYAKCG++ DS+KIF EM  RD VTW SM+  YG HG+G++A
Sbjct: 401 ILKFGIGFSIFVCNALINMYAKCGSLDDSRKIFLEMPSRDSVTWNSMISAYGLHGYGEQA 460

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVD 458
           ++ F EM + GV+ D + F+AVL+AC+HAGLV EG + F+ +N D  +    E Y C++D
Sbjct: 461 LQHFYEMKERGVKLDAVTFLAVLSACNHAGLVTEGQQLFEQVNADCEIPITIEHYACLID 520

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518
           L GR+G++++A E++++MP KP   +W  L+ +CK H   ++ +  + +++  +PN   +
Sbjct: 521 LHGRSGKLEDALEILRTMPMKPSARIWSSLVSSCKLHGRLDIAESLSSQLIRSEPNNAAS 580

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIE 557
           Y +LS I+A +G+W +  + R+ M+    +K  G S IE
Sbjct: 581 YTLLSMIHAEKGRWLDIEQVRETMKLQRLRKCYGFSRIE 619



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 104/422 (24%), Positives = 197/422 (46%), Gaps = 13/422 (3%)

Query: 84  IAGYTSFNCHNQAWTVFVEM--VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKE 141
           I    S   ++Q    F ++    +  N   F L SV+KAC      +    +H +A   
Sbjct: 36  IKTLVSMGLYHQTLQFFTQLHFSAHHFNSIPFVLPSVIKACSFTHFHAFGTQLHCLAFIT 95

Query: 142 GLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGV 201
           G      V NS++ +YA     +++AR VF+ M  ++ ++W ++I  Y  +G     L +
Sbjct: 96  GSYTDPIVSNSIISMYAK-FFDIESARQVFDTMPHRDTITWNSMINAYLQNGLLVEALQM 154

Query: 202 FKEMLLEGVEMNPYSFSIAVRACA---STGWVSFGKLIHAAVIKHG---FGSNLPVMNSI 255
            K+    G    P   +  V  C      GW   G+ IH  V+  G      ++ +  + 
Sbjct: 155 LKDFYFLGFLPKPELLASMVSMCGREMDLGW-RIGRQIHGLVVVDGRIRIQHSVFLSTAF 213

Query: 256 LDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNC 314
           +D Y R      A   FDEM  K+ ++W  +I+G   +   +  L  + +M+ E  SPN 
Sbjct: 214 VDFYFRCGDSLMARSVFDEMEVKNEVSWTAVISGCANNQDYDVALACYREMQVEGVSPNR 273

Query: 315 FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG-NISDSQKIFS 373
            T  +++AACA    +  G+++H    RRG D   + + ALI +Y +CG ++  +++IF 
Sbjct: 274 VTLIALLAACARPGFVKYGKEIHGYAFRRGFDSCHSFSPALIYLYCECGQSLHLAERIFE 333

Query: 374 EMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDE 433
             S RD+V W+S++  Y   G   +A++LF++M      P+ +  +AV++AC++      
Sbjct: 334 GSSLRDVVLWSSIIGSYARRGESDKALKLFNKMRTEETEPNYVTLLAVISACTNLSSFKH 393

Query: 434 GLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACK 493
           G      +  + +  +  +   ++++  + G + ++ ++   MP + D   W  ++ A  
Sbjct: 394 GGVIHGYILKFGIGFSIFVCNALINMYAKCGSLDDSRKIFLEMPSR-DSVTWNSMISAYG 452

Query: 494 EH 495
            H
Sbjct: 453 LH 454



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 117/265 (44%), Gaps = 21/265 (7%)

Query: 297 ECLNMFSKM--KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
           + L  F+++   +  F+   F   S+I AC+     + G Q+H      G   +  ++N+
Sbjct: 47  QTLQFFTQLHFSAHHFNSIPFVLPSVIKACSFTHFHAFGTQLHCLAFITGSYTDPIVSNS 106

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
           +I MYAK  +I  ++++F  M  RD +TW SM+  Y  +G   EA+++  +    G  P 
Sbjct: 107 IISMYAKFFDIESARQVFDTMPHRDTITWNSMINAYLQNGLLVEALQMLKDFYFLGFLPK 166

Query: 415 RIVFMAVLTACSHAGLVDEGLKYFKSMN-----DYNVNPNKEIY--GCVVDLLGRAGRVK 467
             +  ++++ C     +D G +  + ++     D  +     ++     VD   R G   
Sbjct: 167 PELLASMVSMCGRE--MDLGWRIGRQIHGLVVVDGRIRIQHSVFLSTAFVDFYFRCGDSL 224

Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLK---PNMMGTYIILSN 524
            A  +   M  K +E  W  ++  C  ++  ++  LA  R + ++   PN + T I L  
Sbjct: 225 MARSVFDEMEVK-NEVSWTAVISGCANNQDYDVA-LACYREMQVEGVSPNRV-TLIALLA 281

Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKK 549
             A  G    F K+ K + G   ++
Sbjct: 282 ACARPG----FVKYGKEIHGYAFRR 302


>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 758

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 193/567 (34%), Positives = 308/567 (54%), Gaps = 24/567 (4%)

Query: 48  LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
           +A N I +      I  AR LFD++P+ +  +W  M  GY     H     +F E+ R  
Sbjct: 46  VAPNFITTCSRFKRIHHARKLFDKIPQPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIA 105

Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT-CCISMDN 166
             PN FT   ++K+C  ++ +     VH  A K G + + +V  SL+D+Y+   C+  ++
Sbjct: 106 GMPNCFTFPMIIKSCGKLEGVREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCV--ED 163

Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVF-----KEMLLEGVEMNPYSFSIAV 221
           A  VF +M  +N V WT +I GY   G+   G  +F     +++++  V ++ Y  S  +
Sbjct: 164 AYKVFGEMHERNVVVWTAIINGYILCGDVVSGRRLFDLAPERDVVMWSVLISGYIESKNM 223

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
            A        F K+ +   +      N   +N  ++M+          + FDEM E+++ 
Sbjct: 224 AAAREL----FDKMPNRDTMSWNAMLNGYAVNGEVEMF---------EKVFDEMPERNVF 270

Query: 282 TWNTIIAGYEKSG-SSECLNMFSKMKSE-RFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           +WN +I GY K+G  SE L  F +M  E    PN FT  ++++AC+ L AL  G+ VH  
Sbjct: 271 SWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMGKWVHVY 330

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
               G  GNL + N LIDMYAKCG I ++  +F+ +  +D+++W +++ G   HGH  +A
Sbjct: 331 AESIGYKGNLFVGNVLIDMYAKCGVIENAVVVFNCLDRKDIISWNTIINGLAIHGHAPDA 390

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVD 458
           + +FD M   G  PD + F+ +L+AC+H GLV +G  YFKSM D Y++ P  E YGC+VD
Sbjct: 391 LGMFDRMKSEGEEPDGVTFVGILSACTHMGLVKDGFLYFKSMVDHYSIVPQIEHYGCMVD 450

Query: 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518
           LLGRAG + +A   I+ MP +PD  +W  LLGAC+ ++   + +LA  R+++L+PN    
Sbjct: 451 LLGRAGLLDQALNFIRKMPIEPDAVIWAALLGACRLYKNVEIAELALQRLIELEPNNPAN 510

Query: 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYV 578
           ++++SNIY   G+ E+ A+ +  MR  G +K  G S IE  D V  F + D+  S T+ +
Sbjct: 511 FVMVSNIYKDLGRSEDVARLKIAMRDTGFRKLPGCSVIECNDSVVEFYSLDERHSETESI 570

Query: 579 YGVLEMLIRHMNETAYEPDIDCLIHDL 605
           Y VL+ L   +    Y P++  + H L
Sbjct: 571 YRVLKGLTMLLRSHGYVPNLSDVAHGL 597



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 111/386 (28%), Positives = 181/386 (46%), Gaps = 46/386 (11%)

Query: 43  KGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVE 102
           K  S +AT+LI  Y  +G +E+A  +F EM ER+VV WT +I GY           +F  
Sbjct: 142 KSNSFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVVWTAIINGYILCGDVVSGRRLFDL 201

Query: 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNA-ALVHGMAIKEGLEGSIYVENSLMDVYATCC 161
               +V   +  +S  +++    K+++ A  L   M  ++ +       N++++ YA   
Sbjct: 202 APERDVVMWSVLISGYIES----KNMAAARELFDKMPNRDTMSW-----NAMLNGYAVNG 252

Query: 162 ISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG-VEMNPYSFSIA 220
             ++    VF++M  +N  SW  LI GY  +G     L  FK ML+EG V  N ++    
Sbjct: 253 -EVEMFEKVFDEMPERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAV 311

Query: 221 VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280
           + AC+  G +  GK +H      G+  NL V N ++DMY +   + +A   F+ +  KD+
Sbjct: 312 LSACSRLGALDMGKWVHVYAESIGYKGNLFVGNVLIDMYAKCGVIENAVVVFNCLDRKDI 371

Query: 281 ITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339
           I+WNTII G    G + + L MF +MKSE   P+  TF  I++AC            H G
Sbjct: 372 ISWNTIINGLAIHGHAPDALGMFDRMKSEGEEPDGVTFVGILSACT-----------HMG 420

Query: 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEA 399
           +V+   DG L    +++D Y+    I                 +  M+   G  G   +A
Sbjct: 421 LVK---DGFLYF-KSMVDHYSIVPQIEH---------------YGCMVDLLGRAGLLDQA 461

Query: 400 IELFDEMVKSGVRPDRIVFMAVLTAC 425
           +    +M    + PD +++ A+L AC
Sbjct: 462 LNFIRKM---PIEPDAVIWAALLGAC 484



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 126/284 (44%), Gaps = 35/284 (12%)

Query: 40  LIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTV 99
           L P+   ++ + LI  Y +   +  AR LFD+MP RD +SW  M+ GY           V
Sbjct: 201 LAPERDVVMWSVLISGYIESKNMAAARELFDKMPNRDTMSWNAMLNGYAVNGEVEMFEKV 260

Query: 100 FVEM--------------------------------VRNEVNPNAFTLSSVLKACKGMKS 127
           F EM                                V   V PN FTL +VL AC  + +
Sbjct: 261 FDEMPERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGA 320

Query: 128 LSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLIT 187
           L     VH  A   G +G+++V N L+D+YA C + ++NA +VFN +  K+ +SW T+I 
Sbjct: 321 LDMGKWVHVYAESIGYKGNLFVGNVLIDMYAKCGV-IENAVVVFNCLDRKDIISWNTIIN 379

Query: 188 GYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH-GFG 246
           G A  G+    LG+F  M  EG E +  +F   + AC   G V  G L   +++ H    
Sbjct: 380 GLAIHGHAPDALGMFDRMKSEGEEPDGVTFVGILSACTHMGLVKDGFLYFKSMVDHYSIV 439

Query: 247 SNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLITWNTIIAG 289
             +     ++D+  R   L  A  +  +M  E D + W  ++  
Sbjct: 440 PQIEHYGCMVDLLGRAGLLDQALNFIRKMPIEPDAVIWAALLGA 483



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 97/185 (52%), Gaps = 7/185 (3%)

Query: 236 IHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG- 294
           I A ++ HG   N  V  + +    RF  +  A + FD++ + +  TWN +  GY ++G 
Sbjct: 31  IQAQIVTHGLEHNDFVAPNFITTCSRFKRIHHARKLFDKIPQPNTATWNAMFRGYLQNGH 90

Query: 295 SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354
             + + +F ++      PNCFTF  II +C  L  +  G++VH    + G   N  +A +
Sbjct: 91  HRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLEGVREGEEVHCCATKHGFKSNSFVATS 150

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
           LIDMY+K G + D+ K+F EM +R++V WT+++ GY   G       LFD      + P+
Sbjct: 151 LIDMYSKKGCVEDAYKVFGEMHERNVVVWTAIINGYILCGDVVSGRRLFD------LAPE 204

Query: 415 RIVFM 419
           R V M
Sbjct: 205 RDVVM 209



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 75/160 (46%), Gaps = 3/160 (1%)

Query: 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376
           F +++ +C     L    Q+ A IV  GL+ N  +A   I   ++   I  ++K+F ++ 
Sbjct: 15  FITLLRSCKNYERL---HQIQAQIVTHGLEHNDFVAPNFITTCSRFKRIHHARKLFDKIP 71

Query: 377 DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436
             +  TW +M  GY  +GH ++ + LF E+ +    P+   F  ++ +C     V EG +
Sbjct: 72  QPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLEGVREGEE 131

Query: 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
                  +    N  +   ++D+  + G V++AY++   M
Sbjct: 132 VHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEM 171


>gi|326507326|dbj|BAJ95740.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 798

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 194/627 (30%), Positives = 325/627 (51%), Gaps = 68/627 (10%)

Query: 27  QSVKKSSIQSDPPL---IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVM 83
           + VK   I S   L   +P+   +  T ++ +    G + EA  L+++ P   V  +T  
Sbjct: 160 EHVKAGDIASARGLFDGMPERNVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTAT 219

Query: 84  IAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGL 143
           I+G+     H+ A  VF +MV   V PN  T   ++KAC G      A  + G AIK   
Sbjct: 220 ISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIKSNF 279

Query: 144 -EGSIYVENSL-------------------------------MDVYATCCISMDNARLVF 171
            E SI V+NSL                               +DVY+     +D AR V 
Sbjct: 280 FESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESG-DLDGARRVL 338

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           + M  +N+VSW TLI  +   GN    + ++ +ML +G   N   FS  + ACA+   + 
Sbjct: 339 DAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATLEDLR 398

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
            G  IHA  +K G  +N+ V +S++DMYC+     DA   FD + EK+++ WN++ +GY 
Sbjct: 399 GGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLASGYS 458

Query: 292 KSGS-SECLNMFSKMKSERFS-------------------------------PNCFTFTS 319
            +G   E + +F KM +   +                               P   TF+S
Sbjct: 459 YNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFSS 518

Query: 320 IIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD 379
           ++ ACA L +L  G+  HA  ++ G++ ++ +  AL DMYAK G++  S+++F +M +R+
Sbjct: 519 VLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERN 578

Query: 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439
            VTWT+M+ G   +G  +E+I L ++M+ +G+ P+   F+A+L ACSH GLV++ + YF+
Sbjct: 579 DVTWTAMIQGLAENGFAEESILLLEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHYFE 638

Query: 440 SMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN 499
            M  + ++P ++ Y C+VD+L RAGR+ EA  L+   P K + + W  LL AC  ++   
Sbjct: 639 KMQAWGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSEANSWAALLSACNTYKNEE 698

Query: 500 LGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVR 559
           +G+ AA R+ +L  +    Y++LSN+YA+ G+W++ A+ R +M+G   KK+ G SW++VR
Sbjct: 699 IGERAAKRLHELGKDNTAGYVLLSNMYASCGRWKDAARIRVLMKGTTLKKDGGCSWVQVR 758

Query: 560 DKVCGFIANDKMGSHTQYVYGVLEMLI 586
            +   F + +     +  +  +L++L+
Sbjct: 759 GQYHAFFSWEAKHPLSMEINEILDLLL 785



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 78/192 (40%), Gaps = 39/192 (20%)

Query: 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE--------- 405
           ++  + K G+I+ ++ +F  M +R++V++T+M+      G   EA+EL+++         
Sbjct: 157 MVHEHVKAGDIASARGLFDGMPERNVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFF 216

Query: 406 ----------------------MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND 443
                                 MV  GVRP+ I F+ ++ AC  AG     +    S   
Sbjct: 217 TATISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIK 276

Query: 444 YN-VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGK 502
            N    + E+   ++ L  R G    A ++   M  K D   W  LL    E      G 
Sbjct: 277 SNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVK-DVVSWTALLDVYSES-----GD 330

Query: 503 L-AALRVLDLKP 513
           L  A RVLD  P
Sbjct: 331 LDGARRVLDAMP 342


>gi|115458828|ref|NP_001053014.1| Os04g0463800 [Oryza sativa Japonica Group]
 gi|38347057|emb|CAE04357.2| OSJNBa0060P14.4 [Oryza sativa Japonica Group]
 gi|113564585|dbj|BAF14928.1| Os04g0463800 [Oryza sativa Japonica Group]
          Length = 767

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 176/518 (33%), Positives = 292/518 (56%), Gaps = 6/518 (1%)

Query: 45  PSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104
           PS++ ++L   Y      E+AR LF E+PE+D+VSWT +I  Y       +A  +F+ M 
Sbjct: 250 PSVV-SSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGME 308

Query: 105 RNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164
            + + P+   +S +L        +      H   ++     S+ + N+L+ +YA C   +
Sbjct: 309 ESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKC-KQV 367

Query: 165 DNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLL---EGVEMNPYSFSIAV 221
           D A  VF  +  ++  SW++++  Y  +G     L +++EM     +  E +  S    +
Sbjct: 368 DIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISII 427

Query: 222 RACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281
            +C+  G +  G+  H   IKH  G N  V N+++ MY R      A + F  +  KD++
Sbjct: 428 SSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVV 487

Query: 282 TWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340
           TW+ +I+ Y   G S + L ++ +M +E   PN  T  S+I++CA LAAL  G+ +H+ +
Sbjct: 488 TWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHV 547

Query: 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
              GL+ +L++  AL+DMY KCG +  ++K+F  M +RD+VTW  M+ GYG HG   +A+
Sbjct: 548 KDVGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQAL 607

Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLL 460
           +LF  M +  V+P+ + F+A+L+AC HAGLVD+G + F  M +Y++ PN + Y C+VDLL
Sbjct: 608 KLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDLL 667

Query: 461 GRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520
           G++G ++EA +++ +MP +PD  +WG LLGACK H    +G   A +     P   G YI
Sbjct: 668 GKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPENDGYYI 727

Query: 521 ILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEV 558
           ++SN Y +  KW E  K R +M+  G +K +G S I++
Sbjct: 728 LMSNSYGSAEKWNEIEKLRDMMKNHGVEKSIGWSTIDI 765



 Score =  225 bits (574), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 142/490 (28%), Positives = 260/490 (53%), Gaps = 12/490 (2%)

Query: 44  GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           G   +A++L+  Y   G + +A  LFDEMPERDVV+WT +I+G        +  +  V M
Sbjct: 143 GSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRM 202

Query: 104 VRNE----VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
           VR+       PN+ T+ S L+AC  +  LS    +HG  +K G+     V +SL  +Y T
Sbjct: 203 VRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMY-T 261

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
            C S ++AR++F ++  K+ VSWT+LI  Y  +G+    + +F  M   G++ +    S 
Sbjct: 262 KCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISC 321

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
            +    +   V  GK  HAA+++  FG ++ + N+++ MY +   +  A   F  + ++D
Sbjct: 322 LLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRD 381

Query: 280 LITWNTIIAGYEKSG-SSECLNMFSKMK---SERFSPNCFTFTSIIAACATLAALSCGQQ 335
             +W++++  Y K+G   +CL ++ +M+    + F  +  +  SII++C+ L  L  GQ 
Sbjct: 382 TDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQS 441

Query: 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395
            H   ++     N ++ANALI MY +CGN   ++KIF  +  +D+VTW++++  Y   GH
Sbjct: 442 AHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGH 501

Query: 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455
            K+A+ L+D+M+  GV+P+    ++V+++C++   ++ G      + D  +  +  I   
Sbjct: 502 SKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTA 561

Query: 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH--RLPNLGKLAALRVLDLKP 513
           +VD+  + G++  A ++  SM  + D   W  ++     H   +  L   + +   ++KP
Sbjct: 562 LVDMYMKCGQLGIARKMFDSM-LERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKP 620

Query: 514 NMMGTYIILS 523
           N +    ILS
Sbjct: 621 NSLTFLAILS 630



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 152/321 (47%), Gaps = 10/321 (3%)

Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
           W +L+     + +    L   + M   G   + ++  +   A A  G +  G  +HA  +
Sbjct: 75  WNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSV 134

Query: 242 KHGF---GSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS--- 295
           + G      ++ V +S++ MY R   + DA + FDEM E+D++ W  +I+G   +G    
Sbjct: 135 RFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGE 194

Query: 296 --SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353
             S  + M          PN  T  S + AC  L  LS G  +H   V+ G+    ++ +
Sbjct: 195 GLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVS 254

Query: 354 ALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP 413
           +L  MY KC +  D++ +F E+ ++DLV+WTS++  Y   GH ++A+ELF  M +SG++P
Sbjct: 255 SLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQP 314

Query: 414 DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELI 473
           D +V   +L    +   V  G  +  ++   N   +  I   ++ +  +  +V  A  + 
Sbjct: 315 DEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVF 374

Query: 474 KSMPFKPDESVWGPLLGA-CK 493
           + M  + D   W  ++ A CK
Sbjct: 375 R-MLHQRDTDSWSSMVVAYCK 394


>gi|356495756|ref|XP_003516739.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g71420-like [Glycine max]
          Length = 782

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 188/620 (30%), Positives = 332/620 (53%), Gaps = 25/620 (4%)

Query: 6   LLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEA 65
           L +YA+ FH       ++  + ++    +  DP +  +    L  ++I  Y   G +  A
Sbjct: 90  LQTYASLFHACAQKKCLQHGM-TLHHYVLHKDPTI--QNDVFLTNHIINMYCKCGHLAYA 146

Query: 66  RTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGM 125
           R +FD+M  R++VSWT +I+G+       + +++F  ++ +   PN F  +S+L AC+  
Sbjct: 147 RYVFDQMSHRNIVSWTALISGHAQSGLVRECFSLFSGLLAH-FRPNEFAFASLLSACEE- 204

Query: 126 KSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT-------CCISMDNARLVFNDMKWKN 178
             +     VH +A+K  L+ ++YV NSL+ +Y+           + D+A  +F  M+++N
Sbjct: 205 HDIKCGMQVHAVALKISLDANVYVANSLITMYSKRSGFGGGYAQTPDDAWTMFKSMEFRN 264

Query: 179 DVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG-------WVS 231
            VSW ++I  +   G G   + +F  M   G+  +  +      +    G       ++ 
Sbjct: 265 LVSWNSMIAXFQLRGLGDKAICLFAHMYCNGIGFDRATLLSVFSSLNECGAFDVINTYLR 324

Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFD-CLSDANQYF-DEMTEKDLITWNTIIAG 289
               +H   IK G  S + V+ +++  Y      +SD  + F D  ++ D+++W  +I+ 
Sbjct: 325 KCFQLHCLTIKSGLISEIEVVTALIKSYANLGGHISDCYRIFHDTSSQLDIVSWTALISV 384

Query: 290 YEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL 349
           + +    +   +F ++  + + P+ +TF+  + ACA          +H+ ++++G   + 
Sbjct: 385 FAERDPEQAFLLFCQLHRQSYLPDWYTFSIALKACAYFVTEQHAMAIHSQVIKKGFQEDT 444

Query: 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
            L NAL+  YA+CG+++ S+++F+EM   DLV+W SM+  Y  HG  K+A+ELF +M   
Sbjct: 445 VLCNALMHAYARCGSLALSEQVFNEMGCHDLVSWNSMLKSYAIHGQAKDALELFQQM--- 501

Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKE 468
            V PD   F+A+L+ACSH GLVDEG+K F SM +D+ V P  + Y C+VDL GRAG++ E
Sbjct: 502 NVCPDSATFVALLSACSHVGLVDEGVKLFNSMSDDHGVVPQLDHYSCMVDLYGRAGKIFE 561

Query: 469 AYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA 528
           A ELI+ MP KPD  +W  LLG+C++H    L KLAA +  +L+PN    Y+ +SNIY++
Sbjct: 562 AEELIRKMPMKPDSVIWSSLLGSCRKHGETRLAKLAADKFKELEPNNSLGYVQMSNIYSS 621

Query: 529 EGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRH 588
            G + +    R  M     +KE G+SW+E+  +V  F +  +   +   +   LE++I  
Sbjct: 622 GGSFTKAGLIRNEMSDFKVRKEPGLSWVEIGKQVHEFGSGGQYHPNRGAILSRLEIVIGQ 681

Query: 589 MNETAYEPDIDCLIHDLEGE 608
           + E  Y P++   ++D E E
Sbjct: 682 LKEMGYVPELSLALYDTEVE 701


>gi|449496714|ref|XP_004160205.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g11290-like [Cucumis sativus]
          Length = 616

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 193/552 (34%), Positives = 311/552 (56%), Gaps = 17/552 (3%)

Query: 19  PPIIKQSLQSVKKSS-----IQSDPPLIPKGPSI---LATNLIKSYFDEGLIEEARTLFD 70
           PPI+ +++    KS+     IQ    +I  G S+   + T L+  Y     I +A  +FD
Sbjct: 68  PPILTKTISICTKSTLLDFGIQVHSTIIKLGFSLNPYIFTALVDMYGKCWSISDAHKVFD 127

Query: 71  EMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSN 130
           EM    VV+W  ++ GY        A ++F+EM++  + P  F+LS  L  C  ++    
Sbjct: 128 EMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKGIEPTPFSLSGGLVGCSQLQKGDL 187

Query: 131 AALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYA 190
            + +H M++K     ++ V   L+D+Y+ CC ++ ++R VF+ M  KN  +WT++I+GYA
Sbjct: 188 GSQLHAMSLKLRFSSNVVVGTGLIDMYSKCC-NLQDSRRVFDIMLNKNVFTWTSMISGYA 246

Query: 191 HSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLP 250
            +   +  + + +EML   +E N  +++  + + +        K IH  +I  G+ SN  
Sbjct: 247 RNQLPHEAMXLMREMLHLNLEPNGMTYNSLLSSFSCPRHFDKCKQIHCRIITEGYESNNY 306

Query: 251 VMNSILDMYCRFDC---LSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMK 306
           +  +++  Y   +C   L D  +    +   D I+WN +IAG+   G   E L  F +M+
Sbjct: 307 IAVTLVTAYS--ECCGSLEDYRKVCSNIRMSDQISWNAVIAGFTNLGIGEEALECFIQMR 364

Query: 307 SERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNIS 366
            E+F  + FTFTSI  A    +AL  G+Q+H  + + G   NL++ N L+ MYA+ G I 
Sbjct: 365 REKFDVDFFTFTSIFKAIGMTSALEEGKQIHGLVYKTGYTLNLSVQNGLVSMYARSGAIR 424

Query: 367 DSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS 426
           DS+ +FS M++ DL++W S++ G   HG G+EAI+LF++M ++ ++PD   F+AVLTACS
Sbjct: 425 DSKMVFSMMNEHDLISWNSLLSGCAYHGCGEEAIDLFEKMRRTCIKPDNTSFLAVLTACS 484

Query: 427 HAGLVDEGLKYFKSM-NDYNVNPNK-EIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESV 484
           H GL+D+GL+YFK M N   V P K E Y  +VDL GRAG++ EA   I+S+P +P  S+
Sbjct: 485 HVGLLDKGLEYFKLMRNSELVEPPKLEHYATLVDLFGRAGKLYEAEAFIESIPIEPGISI 544

Query: 485 WGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544
           +  LL AC  H   ++    A ++L+L P    TYI+LSN    +G W++ A  R++M  
Sbjct: 545 YKALLSACLIHGNKDIAIRTAKKLLELYPYDPATYIMLSNALGRDGYWDDAASIRRLMSN 604

Query: 545 MGSKKEVGMSWI 556
            G KKE G SW+
Sbjct: 605 RGVKKEPGFSWM 616



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 106/398 (26%), Positives = 198/398 (49%), Gaps = 4/398 (1%)

Query: 100 FVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT 159
            V+++R+   P    L+  +  C     L     VH   IK G   + Y+  +L+D+Y  
Sbjct: 56  LVQLLRHGSPPTPPILTKTISICTKSTLLDFGIQVHSTIIKLGFSLNPYIFTALVDMYGK 115

Query: 160 CCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSI 219
           C  S+ +A  VF++M   + V+W +L+TGY  +G     + +F EML +G+E  P+S S 
Sbjct: 116 CW-SISDAHKVFDEMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKGIEPTPFSLSG 174

Query: 220 AVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD 279
            +  C+       G  +HA  +K  F SN+ V   ++DMY +   L D+ + FD M  K+
Sbjct: 175 GLVGCSQLQKGDLGSQLHAMSLKLRFSSNVVVGTGLIDMYSKCCNLQDSRRVFDIMLNKN 234

Query: 280 LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338
           + TW ++I+GY ++    E + +  +M      PN  T+ S++++ +        +Q+H 
Sbjct: 235 VFTWTSMISGYARNQLPHEAMXLMREMLHLNLEPNGMTYNSLLSSFSCPRHFDKCKQIHC 294

Query: 339 GIVRRGLDGNLALANALIDMYAK-CGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397
            I+  G + N  +A  L+  Y++ CG++ D +K+ S +   D ++W +++ G+   G G+
Sbjct: 295 RIITEGYESNNYIAVTLVTAYSECCGSLEDYRKVCSNIRMSDQISWNAVIAGFTNLGIGE 354

Query: 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVV 457
           EA+E F +M +     D   F ++  A      ++EG +    +       N  +   +V
Sbjct: 355 EALECFIQMRREKFDVDFFTFTSIFKAIGMTSALEEGKQIHGLVYKTGYTLNLSVQNGLV 414

Query: 458 DLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH 495
            +  R+G ++++ +++ SM  + D   W  LL  C  H
Sbjct: 415 SMYARSGAIRDS-KMVFSMMNEHDLISWNSLLSGCAYH 451


>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Brachypodium distachyon]
          Length = 689

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 192/573 (33%), Positives = 304/573 (53%), Gaps = 9/573 (1%)

Query: 40  LIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTV 99
           L P  P  +  +L+  Y    L   A +     P   VVS+T  I+G         A + 
Sbjct: 39  LSPGLPPFICAHLVNLYSKLDLPAAAASALASDPNPTVVSFTAFISGAAQHARPLAALSA 98

Query: 100 FVEMVRNEVNPNAFTLSSVLKA--CKGMKSLSNAALVHGMAIKEG-LEGSIYVENSLMDV 156
           F  M+R  + PN FT  S  KA  C   +  +    +H +A++ G L G  +V  + MD+
Sbjct: 99  FAAMLRVGLRPNDFTFPSAFKAAACAPPRCSTVGPQIHALALRFGYLPGDPFVSCAAMDM 158

Query: 157 Y-ATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPY 215
           Y  T C+ +  AR +F +M  +N ++W  ++T     G        +  +   G   N  
Sbjct: 159 YFKTGCLGL--ARRLFEEMPNRNVIAWNAVMTNAVIDGRPLETFKAYFGLREAGGMPNVV 216

Query: 216 SFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM 275
           S      ACA   ++S G+  H  V+  GF  ++ V N+++D Y +  C   A   FD M
Sbjct: 217 SVCAFFNACAGAMFLSLGEQFHGFVVTCGFDMDVSVSNAMVDFYGKCRCAGKARAVFDGM 276

Query: 276 TEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334
             ++ ++W ++I  Y + G+ E  L ++   ++    P  F  +S++  CA L  L+ G+
Sbjct: 277 RVRNSVSWCSMIVAYAQHGAEEDALAVYMGARNTGEEPTDFMVSSVLTTCAGLLGLNFGR 336

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
            +HA  VR  +D N+ +A+AL+DMY KCG + D++++F +M +R+LVTW +M+ GY   G
Sbjct: 337 ALHAVAVRSCIDANIFVASALVDMYGKCGGVEDAEQVFLDMPERNLVTWNAMIGGYAHIG 396

Query: 395 HGKEAIELFDEMVKSG-VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEI 452
             + A+ +FD M++SG   P+ I  + V+TACS  GL  +G + F +M + + V P  E 
Sbjct: 397 DAQNALAVFDAMIRSGGTSPNHITLVNVITACSRGGLTKDGYELFDTMRERFGVEPRTEH 456

Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLK 512
           Y CVVDLLGRAG  + AYE+I+ MP +P  SVWG LLGACK H    LG++A+ ++ +L 
Sbjct: 457 YACVVDLLGRAGMEERAYEIIQRMPMRPSISVWGALLGACKMHGKTELGRIASEKLFELD 516

Query: 513 PNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMG 572
           P   G +++LSN+ A+ G+W E    RK M+ +G KKE G SWI  ++ V  F A D   
Sbjct: 517 PQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIKKEPGCSWITWKNVVHVFYAKDTKH 576

Query: 573 SHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDL 605
                +  +L  L + M  + Y PD    ++D+
Sbjct: 577 DRNSEIQALLAKLKKQMQASGYMPDTQYSLYDV 609


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 186/606 (30%), Positives = 316/606 (52%), Gaps = 62/606 (10%)

Query: 62   IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121
            +E+A  +F EMP  + + W   I          +   +F +M  + +     T+  VL+A
Sbjct: 725  LEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQA 784

Query: 122  CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS 181
            C  M +L+ A  +HG   + GL+  + + N L+ +Y+     ++ AR VF+ M+ +N  S
Sbjct: 785  CGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNG-KLELARRVFDSMENRNTSS 843

Query: 182  WTTLITGYA---------------------------------HSGNGYGG--LGVFKEML 206
            W ++I+ YA                                 H  +GY    L + + M 
Sbjct: 844  WNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQ 903

Query: 207  LEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLS 266
             EG + N  S +  ++A +  G+++ GK  H  V+++GF  ++ V  S++DMY +   L 
Sbjct: 904  GEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLX 963

Query: 267  DANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSE----------------- 308
             A   FD M  +++  WN++++GY   G  E  L + ++M+ E                 
Sbjct: 964  SAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYA 1023

Query: 309  -------RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK 361
                    F PN  + T ++ ACA+L+ L  G+++H   +R G   ++ +A ALIDMY+K
Sbjct: 1024 MWGCARKAFMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSK 1083

Query: 362  CGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAV 421
              ++ ++ K+F  + ++ L +W  M++G+   G GKEAI +F+EM K GV PD I F A+
Sbjct: 1084 SSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTAL 1143

Query: 422  LTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKP 480
            L+AC ++GL+ EG KYF SM  DY + P  E Y C+VDLLGRAG + EA++LI +MP KP
Sbjct: 1144 LSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKP 1203

Query: 481  DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRK 540
            D ++WG LLG+C+ H+     + AA  +  L+PN    YI++ N+Y+   +WE+    R+
Sbjct: 1204 DATIWGALLGSCRIHKNLXFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRE 1263

Query: 541  IMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDC 600
            +M   G +     SWI++  +V  F +++K       +Y  L  L+  M +  Y PD++C
Sbjct: 1264 LMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNC 1323

Query: 601  LIHDLE 606
            +  +++
Sbjct: 1324 VYQNMD 1329



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 104/422 (24%), Positives = 190/422 (45%), Gaps = 38/422 (9%)

Query: 45   PSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGY-TSFNCHNQAWTVFVEM 103
            P   A NLI SY   G    A  +F     R+ + W   +  + +S    +    VF E+
Sbjct: 606  PDAAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKEL 665

Query: 104  VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
                V  ++   S  LK C  +  +     +HG  IK G +  +Y+  +LM+ Y  C   
Sbjct: 666  HGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCW-G 724

Query: 164  MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
            ++ A  VF++M     + W   I     S     G+ +F++M    ++    +    ++A
Sbjct: 725  LEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQA 784

Query: 224  CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
            C   G ++  K IH  V + G  S++ + N ++ MY +   L  A + FD M  ++  +W
Sbjct: 785  CGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSW 844

Query: 284  NTIIAGYEKSG------------------------------------SSECLNMFSKMKS 307
            N++I+ Y   G                                      E LN+  +M+ 
Sbjct: 845  NSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQG 904

Query: 308  ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISD 367
            E F PN  + TS++ A + L  L+ G++ H  ++R G D ++ +  +LIDMY K  ++  
Sbjct: 905  EGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXS 964

Query: 368  SQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH 427
            +Q +F  M +R++  W S++ GY   G  ++A+ L ++M K G++PD + +  +++  + 
Sbjct: 965  AQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAM 1024

Query: 428  AG 429
             G
Sbjct: 1025 WG 1026



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%)

Query: 47   ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
             +AT LI  Y     ++ A  +F  +  + + SW  MI G+  F    +A +VF EM + 
Sbjct: 1072 FVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKV 1131

Query: 107  EVNPNAFTLSSVLKACK 123
             V P+A T +++L ACK
Sbjct: 1132 GVGPDAITFTALLSACK 1148


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  334 bits (857), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 178/515 (34%), Positives = 293/515 (56%), Gaps = 8/515 (1%)

Query: 96  AWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMD 155
           A  V   M R  V  ++ T S ++K C    ++     VH      G     ++ N L++
Sbjct: 269 AMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILIN 328

Query: 156 VYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPY 215
           +Y    + ++ A+++F+ M  +N VSWTT+I+ Y+++      + +   M  +GV  N +
Sbjct: 329 MYVKFNL-LEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMF 387

Query: 216 SFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM 275
           +FS  +RAC     +   K +H+ ++K G  S++ V ++++D+Y +   L +A + F EM
Sbjct: 388 TFSSVLRACERLYDL---KQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREM 444

Query: 276 TEKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334
              D + WN+IIA + + S   E L+++  M+   F  +  T TS++ AC +L+ L  G+
Sbjct: 445 MTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGR 504

Query: 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHG 394
           Q H  +++   D +L L NAL+DMY KCG++ D++ IF+ M+ +D+++W++M+ G   +G
Sbjct: 505 QAHVHVLK--FDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNG 562

Query: 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIY 453
              EA+ LF+ M   G +P+ I  + VL ACSHAGLV+EG  YF+SMN+ Y ++P +E Y
Sbjct: 563 FSMEALNLFESMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHY 622

Query: 454 GCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513
           GC++DLLGRA ++ +  +LI  M  +PD   W  LL AC+  +  +L   AA  +L L P
Sbjct: 623 GCMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEILKLDP 682

Query: 514 NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGS 573
              G Y++LSNIYA   +W + A+ R+ M+  G +KE G SWIEV  ++  FI  DK   
Sbjct: 683 QDTGAYVLLSNIYAISKRWNDVAEVRRTMKKRGIRKEPGCSWIEVNKQIHAFILGDKSHP 742

Query: 574 HTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
               +   L   I  +    Y PD + ++ DLEGE
Sbjct: 743 QIDEINRQLNQFICRLAGAGYVPDTNFVLQDLEGE 777



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 120/358 (33%), Positives = 192/358 (53%), Gaps = 32/358 (8%)

Query: 45  PSILATN-LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
           P    TN LI  Y    L+EEA+ LFD+MPER+VVSWT MI+ Y++   +++A  +   M
Sbjct: 318 PKTFLTNILINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFM 377

Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
            R+ V PN FT SSVL+AC+ +  L     +H   +K GLE  ++V ++L+DVY+     
Sbjct: 378 FRDGVMPNMFTFSSVLRACERLYDLKQ---LHSWIMKVGLESDVFVRSALIDVYSKMGEL 434

Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
           ++ A  VF +M   + V W ++I  +A   +G   L ++K M   G   +  + +  +RA
Sbjct: 435 LE-ALKVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRA 493

Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
           C S   +  G+  H  V+K  F  +L + N++LDMYC+   L DA   F+ M +KD+I+W
Sbjct: 494 CTSLSLLELGRQAHVHVLK--FDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISW 551

Query: 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
           +T+IAG  ++G S E LN+F  MK +   PN  T   ++ AC+           HAG+V 
Sbjct: 552 STMIAGLAQNGFSMEALNLFESMKVQGPKPNHITILGVLFACS-----------HAGLVN 600

Query: 343 R------------GLDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMM 387
                        G+D        ++D+  +   + D  K+  EM+ + D+VTW +++
Sbjct: 601 EGWYYFRSMNNLYGIDPGREHYGCMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLL 658


>gi|186512044|ref|NP_001119013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635616|sp|P0C8Q2.1|PP323_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19191, mitochondrial; Flags: Precursor
 gi|332658758|gb|AEE84158.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  334 bits (857), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 178/529 (33%), Positives = 297/529 (56%), Gaps = 6/529 (1%)

Query: 62  IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121
           ++ A  +F+ MPERD  +W  M++G+      ++A+++F EM  NE+ P++ T+ +++++
Sbjct: 103 VDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQS 162

Query: 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFN--DMKWKND 179
               KSL     +H + I+ G++  + V N+ +  Y  C   +D+A+LVF   D   +  
Sbjct: 163 ASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCG-DLDSAKLVFEAIDRGDRTV 221

Query: 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAA 239
           VSW ++   Y+  G  +   G++  ML E  + +  +F     +C +   ++ G+LIH+ 
Sbjct: 222 VSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSH 281

Query: 240 VIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY-EKSGSSEC 298
            I  G   ++  +N+ + MY + +    A   FD MT +  ++W  +I+GY EK    E 
Sbjct: 282 AIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEA 341

Query: 299 LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD-GNLALANALID 357
           L +F  M      P+  T  S+I+ C    +L  G+ + A     G    N+ + NALID
Sbjct: 342 LALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNVMICNALID 401

Query: 358 MYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIV 417
           MY+KCG+I +++ IF    ++ +VTWT+M+ GY  +G   EA++LF +M+    +P+ I 
Sbjct: 402 MYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHIT 461

Query: 418 FMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
           F+AVL AC+H+G +++G +YF  M   YN++P  + Y C+VDLLGR G+++EA ELI++M
Sbjct: 462 FLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNM 521

Query: 477 PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFA 536
             KPD  +WG LL ACK HR   + + AA  + +L+P M   Y+ ++NIYAA G W+ FA
Sbjct: 522 SAKPDAGIWGALLNACKIHRNVKIAEQAAESLFNLEPQMAAPYVEMANIYAAAGMWDGFA 581

Query: 537 KFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEML 585
           + R IM+    KK  G S I+V  K   F   +      + +Y  L  L
Sbjct: 582 RIRSIMKQRNIKKYPGESVIQVNGKNHSFTVGEHGHVENEVIYFTLNGL 630



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 119/482 (24%), Positives = 225/482 (46%), Gaps = 27/482 (5%)

Query: 77  VVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHG 136
           V +W + I    + N   ++  +F EM R    PN FT   V KAC  +  +    +VH 
Sbjct: 17  VNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHA 76

Query: 137 MAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGY 196
             IK      ++V  + +D++  C  S+D A  VF  M  ++  +W  +++G+  SG+  
Sbjct: 77  HLIKSPFWSDVFVGTATVDMFVKCN-SVDYAAKVFERMPERDATTWNAMLSGFCQSGHTD 135

Query: 197 GGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSIL 256
               +F+EM L  +  +  +    +++ +    +   + +HA  I+ G    + V N+ +
Sbjct: 136 KAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWI 195

Query: 257 DMYCRFDCLSDANQYFDEMTEKD--LITWNTIIAGYEKSGSS-ECLNMFSKMKSERFSPN 313
             Y +   L  A   F+ +   D  +++WN++   Y   G + +   ++  M  E F P+
Sbjct: 196 STYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPD 255

Query: 314 CFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFS 373
             TF ++ A+C     L+ G+ +H+  +  G D ++   N  I MY+K  +   ++ +F 
Sbjct: 256 LSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFD 315

Query: 374 EMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDE 433
            M+ R  V+WT M+ GY   G   EA+ LF  M+KSG +PD +  +++++ C   G ++ 
Sbjct: 316 IMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLET 375

Query: 434 GLKYFKSMNDYNVNPNKEIYGC----------VVDLLGRAGRVKEAYELIKSMPFKPDES 483
           G K+        ++   +IYGC          ++D+  + G + EA ++  + P K    
Sbjct: 376 G-KW--------IDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKT-VV 425

Query: 484 VWGPLLG--ACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKI 541
            W  ++   A     L  L   + +  LD KPN + T++ +    A  G  E+  ++  I
Sbjct: 426 TWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHI-TFLAVLQACAHSGSLEKGWEYFHI 484

Query: 542 MR 543
           M+
Sbjct: 485 MK 486



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 54/104 (51%)

Query: 25  SLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMI 84
           SL++ K    ++D     +   ++   LI  Y   G I EAR +FD  PE+ VV+WT MI
Sbjct: 372 SLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMI 431

Query: 85  AGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSL 128
           AGY       +A  +F +M+  +  PN  T  +VL+AC    SL
Sbjct: 432 AGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSL 475


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 158/438 (36%), Positives = 264/438 (60%), Gaps = 2/438 (0%)

Query: 174 MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG 233
           M++ ++VSW +LI G    G     L  F++M    ++++ Y+    + + AS   +   
Sbjct: 1   MEFDDEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNA 60

Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
             +H  +IK GF +   V N+++DMY +   L  A   F +M +KD+++W +++ GY  +
Sbjct: 61  ISVHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHN 120

Query: 294 GS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
           GS  E + +F KM+     P+     S+++ACA L  +  GQQ+HA +V+ GL+ +L++ 
Sbjct: 121 GSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVD 180

Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
           N+L+ MYAKCG+I D+ + F  M  RD+++WT++++GY  +G GK +++ +D+M+ +G +
Sbjct: 181 NSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTK 240

Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYE 471
           PD I F+ +L ACSH GL+  G  YF++M+  Y + P  E Y C++DLLGR+G++ EA  
Sbjct: 241 PDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKG 300

Query: 472 LIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK 531
           L+  M   PD  VW  LL AC+ H+   LG++AA  + +L+P     Y++LSN+Y+A GK
Sbjct: 301 LLNQMVVAPDAVVWKALLAACRVHKELELGEMAAKNLFELEPMNSMPYVMLSNMYSAAGK 360

Query: 532 WEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNE 591
           WE+ A+ R++MR  G  KE G SWIE   KV  F++ D+       +Y  ++ +I  + E
Sbjct: 361 WEDAARIRRLMRSRGICKEPGYSWIETNSKVSTFMSEDRNHPLRNEIYSKIDEIIMLIKE 420

Query: 592 TAYEPDIDCLIHDLEGET 609
             Y PD+   +HD + E 
Sbjct: 421 AGYVPDMSFALHDTDDEV 438



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/321 (30%), Positives = 170/321 (52%), Gaps = 4/321 (1%)

Query: 76  DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVH 135
           D VSW  +I G         A + F +M   ++  + +TL SVL +   MK + NA  VH
Sbjct: 5   DEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVH 64

Query: 136 GMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNG 195
            + IK G E    V N+L+D+YA     +D A +VF+ M  K+ VSWT+L+TGY+H+G+ 
Sbjct: 65  CLIIKTGFEAYKLVNNALIDMYAKQG-KLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSY 123

Query: 196 YGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSI 255
              + +F +M + GV  +  + +  + ACA    + FG+ IHA ++K G  S+L V NS+
Sbjct: 124 EEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSL 183

Query: 256 LDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNC 314
           + MY +   + DAN+ FD M  +D+I+W  +I GY ++G  +  L  + +M +    P+ 
Sbjct: 184 VTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDY 243

Query: 315 FTFTSIIAACATLAALSCGQQVHAGIVR-RGLDGNLALANALIDMYAKCGNISDSQKIFS 373
            TF  ++ AC+    L  G+     + +  G+         +ID+  + G +++++ + +
Sbjct: 244 ITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLN 303

Query: 374 EM-SDRDLVTWTSMMIGYGAH 393
           +M    D V W +++     H
Sbjct: 304 QMVVAPDAVVWKALLAACRVH 324



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 127/240 (52%), Gaps = 3/240 (1%)

Query: 52  LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
           LI  Y  +G ++ A  +F +M ++DVVSWT ++ GY+    + +A  +F +M  + V P+
Sbjct: 82  LIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYPD 141

Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
              ++SVL AC  +  +     +H   +K GLE S+ V+NSL+ +YA C  S+ +A   F
Sbjct: 142 QIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMYAKCG-SIVDANRAF 200

Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
           ++M  ++ +SWT LI GYA +G G   L  + +M+  G + +  +F   + AC+  G + 
Sbjct: 201 DNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITFIGLLFACSHNGLLG 260

Query: 232 FGKLIHAAVIK-HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-TEKDLITWNTIIAG 289
            G+    A+ K +G          ++D+  R   L++A    ++M    D + W  ++A 
Sbjct: 261 SGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVWKALLAA 320



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 35/72 (48%)

Query: 51  NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
           +L+  Y   G I +A   FD MP RDV+SWT +I GY        +   + +M+     P
Sbjct: 182 SLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKP 241

Query: 111 NAFTLSSVLKAC 122
           +  T   +L AC
Sbjct: 242 DYITFIGLLFAC 253


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.321    0.135    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,585,800,032
Number of Sequences: 23463169
Number of extensions: 399047815
Number of successful extensions: 1115546
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 10572
Number of HSP's successfully gapped in prelim test: 1430
Number of HSP's that attempted gapping in prelim test: 900925
Number of HSP's gapped (non-prelim): 66067
length of query: 609
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 460
effective length of database: 8,863,183,186
effective search space: 4077064265560
effective search space used: 4077064265560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 80 (35.4 bits)