Query 007288
Match_columns 609
No_of_seqs 640 out of 3605
Neff 11.0
Searched_HMMs 46136
Date Thu Mar 28 21:32:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007288.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007288hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 9.1E-90 2E-94 753.8 66.5 561 41-604 217-779 (857)
2 PLN03081 pentatricopeptide (PP 100.0 4E-84 8.6E-89 692.7 65.4 535 74-609 84-621 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 7.4E-76 1.6E-80 644.0 56.2 541 42-602 117-661 (857)
4 PLN03218 maturation of RBCL 1; 100.0 2.2E-68 4.7E-73 572.9 60.4 551 42-604 366-964 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 7.4E-64 1.6E-68 538.0 54.5 483 22-511 386-909 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 2.3E-60 4.9E-65 509.5 46.9 405 41-448 153-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-29 2.3E-34 285.7 55.8 494 44-548 361-869 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.7E-29 3.6E-34 284.1 56.2 491 45-546 328-833 (899)
9 PRK11447 cellulose synthase su 99.9 7.2E-22 1.6E-26 222.8 55.5 491 45-547 61-702 (1157)
10 PRK11447 cellulose synthase su 99.9 3.4E-21 7.4E-26 217.4 52.6 485 49-546 31-667 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 3.1E-20 6.6E-25 178.0 35.9 447 83-542 54-516 (966)
12 PRK09782 bacteriophage N4 rece 99.9 2.1E-18 4.4E-23 186.2 53.0 486 39-546 35-707 (987)
13 PRK09782 bacteriophage N4 rece 99.9 1.5E-17 3.2E-22 179.6 51.0 488 46-547 78-742 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 3.3E-19 7.2E-24 170.9 33.1 463 116-597 52-531 (966)
15 TIGR00990 3a0801s09 mitochondr 99.9 1.7E-17 3.6E-22 176.1 45.4 247 295-545 310-571 (615)
16 PRK11788 tetratricopeptide rep 99.9 4.5E-19 9.7E-24 178.7 30.1 298 223-554 44-356 (389)
17 PRK10049 pgaA outer membrane p 99.8 4.2E-16 9E-21 168.5 47.5 393 116-516 19-461 (765)
18 PRK11788 tetratricopeptide rep 99.8 1.2E-17 2.7E-22 168.2 33.0 292 185-510 41-346 (389)
19 PRK15174 Vi polysaccharide exp 99.8 9.6E-17 2.1E-21 169.7 40.8 329 180-515 43-385 (656)
20 PRK10049 pgaA outer membrane p 99.8 2.3E-16 5E-21 170.5 43.8 395 146-547 14-458 (765)
21 TIGR00990 3a0801s09 mitochondr 99.8 8.4E-16 1.8E-20 163.2 43.7 271 262-544 307-596 (615)
22 PRK14574 hmsH outer membrane p 99.8 5.8E-15 1.2E-19 156.5 45.4 438 55-518 43-520 (822)
23 PRK15174 Vi polysaccharide exp 99.8 9.2E-16 2E-20 162.3 39.2 327 215-548 43-384 (656)
24 PRK14574 hmsH outer membrane p 99.8 1.1E-14 2.5E-19 154.3 46.4 429 87-547 44-515 (822)
25 KOG4422 Uncharacterized conser 99.8 2.5E-15 5.5E-20 138.5 34.3 254 76-361 206-480 (625)
26 KOG2002 TPR-containing nuclear 99.8 6.2E-15 1.3E-19 149.5 40.0 487 54-547 207-747 (1018)
27 KOG4422 Uncharacterized conser 99.8 2.3E-14 5E-19 132.3 38.9 426 78-547 117-592 (625)
28 KOG2002 TPR-containing nuclear 99.8 3.6E-14 7.9E-19 144.0 40.5 477 59-545 177-709 (1018)
29 KOG2003 TPR repeat-containing 99.7 6.1E-15 1.3E-19 136.9 25.2 468 58-531 161-709 (840)
30 KOG2076 RNA polymerase III tra 99.7 6.8E-12 1.5E-16 127.0 45.6 486 55-545 148-849 (895)
31 KOG0495 HAT repeat protein [RN 99.6 1.5E-10 3.2E-15 113.1 43.5 493 55-561 385-894 (913)
32 KOG0495 HAT repeat protein [RN 99.6 6.1E-10 1.3E-14 108.9 45.7 446 85-548 384-849 (913)
33 KOG2076 RNA polymerase III tra 99.6 6.7E-12 1.5E-16 127.0 33.5 320 224-546 149-513 (895)
34 KOG0547 Translocase of outer m 99.6 1.2E-11 2.6E-16 116.6 32.6 214 326-544 338-565 (606)
35 KOG4318 Bicoid mRNA stability 99.6 1.8E-11 4E-16 123.3 33.7 354 177-549 202-598 (1088)
36 KOG1155 Anaphase-promoting com 99.6 8.3E-11 1.8E-15 110.4 35.6 328 210-544 160-494 (559)
37 KOG2003 TPR repeat-containing 99.6 2E-11 4.2E-16 113.9 31.2 440 47-497 202-709 (840)
38 PF13429 TPR_15: Tetratricopep 99.6 1.7E-14 3.7E-19 137.6 11.3 221 321-544 51-276 (280)
39 KOG1915 Cell cycle control pro 99.5 3.5E-09 7.5E-14 99.9 42.2 474 59-542 86-622 (677)
40 KOG1915 Cell cycle control pro 99.5 1.4E-09 3.1E-14 102.4 39.2 459 76-544 72-584 (677)
41 COG2956 Predicted N-acetylgluc 99.5 6.8E-11 1.5E-15 106.0 27.6 284 251-565 71-367 (389)
42 PRK10747 putative protoheme IX 99.5 7.1E-11 1.5E-15 118.0 30.5 245 291-544 129-389 (398)
43 PRK10747 putative protoheme IX 99.5 9.3E-11 2E-15 117.1 31.1 284 192-511 97-390 (398)
44 KOG1126 DNA-binding cell divis 99.5 5.4E-12 1.2E-16 123.8 21.2 200 346-548 418-623 (638)
45 KOG1155 Anaphase-promoting com 99.5 4.4E-10 9.6E-15 105.6 32.5 359 155-545 172-553 (559)
46 KOG1126 DNA-binding cell divis 99.4 2E-11 4.4E-16 119.8 22.2 247 295-545 335-586 (638)
47 TIGR00540 hemY_coli hemY prote 99.4 2.6E-10 5.6E-15 114.6 30.9 283 192-510 97-398 (409)
48 TIGR00540 hemY_coli hemY prote 99.4 9.2E-10 2E-14 110.7 33.1 279 262-544 97-398 (409)
49 KOG4318 Bicoid mRNA stability 99.4 7.7E-12 1.7E-16 125.9 17.5 267 300-606 11-279 (1088)
50 PF13429 TPR_15: Tetratricopep 99.4 2.1E-12 4.6E-17 123.2 13.1 252 186-441 15-274 (280)
51 COG3071 HemY Uncharacterized e 99.3 5.2E-09 1.1E-13 97.1 29.6 283 192-509 97-388 (400)
52 KOG1173 Anaphase-promoting com 99.3 9.1E-09 2E-13 99.5 32.0 476 42-526 12-533 (611)
53 COG2956 Predicted N-acetylgluc 99.3 5.5E-09 1.2E-13 94.0 27.8 285 192-510 48-346 (389)
54 KOG0547 Translocase of outer m 99.3 1E-08 2.2E-13 97.3 30.7 402 80-513 118-568 (606)
55 COG3071 HemY Uncharacterized e 99.3 4.4E-09 9.6E-14 97.6 27.4 221 315-544 154-389 (400)
56 KOG3785 Uncharacterized conser 99.3 6.4E-08 1.4E-12 88.2 34.0 468 53-551 29-520 (557)
57 KOG1840 Kinesin light chain [C 99.3 1.5E-09 3.2E-14 108.0 25.8 231 314-544 199-478 (508)
58 TIGR02521 type_IV_pilW type IV 99.3 9.8E-10 2.1E-14 102.0 23.2 195 349-544 31-231 (234)
59 PF13041 PPR_2: PPR repeat fam 99.3 5.8E-12 1.3E-16 84.0 5.5 50 75-124 1-50 (50)
60 KOG2376 Signal recognition par 99.3 2E-07 4.3E-12 90.9 38.0 437 82-542 17-517 (652)
61 KOG1173 Anaphase-promoting com 99.3 5.1E-08 1.1E-12 94.4 33.0 255 286-544 250-517 (611)
62 KOG1174 Anaphase-promoting com 99.3 8.4E-08 1.8E-12 89.3 32.9 268 246-518 229-507 (564)
63 PF13041 PPR_2: PPR repeat fam 99.2 2.2E-11 4.9E-16 81.2 6.7 50 378-427 1-50 (50)
64 KOG4162 Predicted calmodulin-b 99.2 6.3E-07 1.4E-11 90.3 40.3 128 418-546 653-784 (799)
65 KOG3785 Uncharacterized conser 99.2 3.2E-07 7E-12 83.7 33.5 445 84-549 29-494 (557)
66 KOG1129 TPR repeat-containing 99.2 1.1E-09 2.4E-14 98.3 16.7 226 318-547 227-460 (478)
67 KOG2047 mRNA splicing factor [ 99.2 2.3E-06 4.9E-11 84.5 39.7 425 113-544 103-614 (835)
68 PRK12370 invasion protein regu 99.2 1.4E-08 3.1E-13 106.2 27.1 258 279-547 255-537 (553)
69 KOG2047 mRNA splicing factor [ 99.2 2.3E-06 5.1E-11 84.4 39.6 487 48-544 104-686 (835)
70 TIGR02521 type_IV_pilW type IV 99.1 1.9E-08 4.1E-13 93.3 23.8 196 315-512 32-233 (234)
71 KOG1840 Kinesin light chain [C 99.1 5.1E-08 1.1E-12 97.3 27.5 128 383-510 328-478 (508)
72 COG3063 PilF Tfp pilus assembl 99.1 7.8E-09 1.7E-13 88.8 17.9 171 382-556 37-212 (250)
73 PRK12370 invasion protein regu 99.1 1.7E-08 3.6E-13 105.7 23.4 227 313-545 255-502 (553)
74 PRK11189 lipoprotein NlpI; Pro 99.1 1.9E-08 4.2E-13 96.1 20.7 190 350-547 65-267 (296)
75 PF12569 NARP1: NMDA receptor- 99.1 5.3E-07 1.2E-11 91.2 31.4 282 188-476 13-331 (517)
76 KOG3617 WD40 and TPR repeat-co 99.1 4.2E-06 9.2E-11 84.7 36.5 202 47-276 758-994 (1416)
77 KOG1156 N-terminal acetyltrans 99.1 6E-06 1.3E-10 81.8 36.8 407 88-508 52-508 (700)
78 PF12569 NARP1: NMDA receptor- 99.0 2.8E-06 6.1E-11 86.1 35.0 47 495-541 470-516 (517)
79 KOG1129 TPR repeat-containing 99.0 1.2E-08 2.6E-13 91.8 15.4 227 284-514 227-461 (478)
80 KOG4162 Predicted calmodulin-b 99.0 4.1E-06 8.9E-11 84.6 34.3 403 108-517 319-789 (799)
81 KOG0985 Vesicle coat protein c 99.0 4.2E-05 9.1E-10 79.5 40.0 156 364-541 1090-1245(1666)
82 KOG0624 dsRNA-activated protei 99.0 2.8E-06 6E-11 77.5 28.2 286 255-545 44-370 (504)
83 KOG3616 Selective LIM binding 98.9 1.1E-05 2.4E-10 80.8 33.9 58 117-177 620-677 (1636)
84 KOG2376 Signal recognition par 98.9 3.4E-05 7.4E-10 75.8 36.4 21 224-244 234-254 (652)
85 KOG3616 Selective LIM binding 98.9 9.8E-06 2.1E-10 81.1 32.5 191 322-538 740-930 (1636)
86 KOG0985 Vesicle coat protein c 98.9 1.8E-05 3.9E-10 82.1 35.0 115 279-404 1103-1218(1666)
87 PRK11189 lipoprotein NlpI; Pro 98.9 1.5E-06 3.1E-11 83.3 26.0 216 295-517 42-271 (296)
88 KOG1174 Anaphase-promoting com 98.9 6.7E-05 1.5E-09 70.5 38.5 263 278-547 230-502 (564)
89 KOG0548 Molecular co-chaperone 98.9 2.4E-06 5.2E-11 82.8 25.6 373 155-546 10-456 (539)
90 COG3063 PilF Tfp pilus assembl 98.9 1.6E-06 3.4E-11 75.0 21.7 196 317-514 38-239 (250)
91 KOG3617 WD40 and TPR repeat-co 98.8 7.1E-06 1.5E-10 83.2 28.7 382 45-477 725-1172(1416)
92 KOG1156 N-terminal acetyltrans 98.8 2.6E-05 5.6E-10 77.5 31.9 422 115-547 11-470 (700)
93 KOG4340 Uncharacterized conser 98.8 2.5E-06 5.5E-11 76.2 22.2 336 188-546 87-444 (459)
94 KOG1125 TPR repeat-containing 98.8 1.5E-07 3.2E-12 91.8 15.6 218 325-545 296-527 (579)
95 KOG0624 dsRNA-activated protei 98.8 2.3E-05 5E-10 71.7 28.2 317 178-519 37-378 (504)
96 PF04733 Coatomer_E: Coatomer 98.7 4.3E-07 9.2E-12 85.6 15.9 146 390-544 112-264 (290)
97 KOG0548 Molecular co-chaperone 98.7 9.6E-06 2.1E-10 78.7 24.5 440 53-528 9-472 (539)
98 KOG4340 Uncharacterized conser 98.7 1.4E-05 3E-10 71.7 23.1 283 49-339 13-335 (459)
99 PRK04841 transcriptional regul 98.7 0.00059 1.3E-08 77.2 42.4 432 62-513 264-762 (903)
100 PF04733 Coatomer_E: Coatomer 98.7 1.5E-06 3.1E-11 82.0 17.8 154 356-515 109-269 (290)
101 TIGR03302 OM_YfiO outer membra 98.7 2E-06 4.3E-11 79.8 18.3 182 348-546 32-233 (235)
102 KOG1127 TPR repeat-containing 98.7 4.9E-05 1.1E-09 79.1 29.0 156 48-205 494-656 (1238)
103 cd05804 StaR_like StaR_like; a 98.7 7.7E-05 1.7E-09 74.2 30.6 192 355-546 120-337 (355)
104 PRK04841 transcriptional regul 98.7 5.3E-05 1.1E-09 85.6 32.6 323 224-546 384-761 (903)
105 cd05804 StaR_like StaR_like; a 98.6 0.00012 2.5E-09 72.9 31.0 193 318-511 118-336 (355)
106 PRK10370 formate-dependent nit 98.6 2.5E-06 5.3E-11 75.9 16.8 120 427-547 51-175 (198)
107 KOG1127 TPR repeat-containing 98.6 6.9E-05 1.5E-09 78.0 28.6 449 79-543 494-994 (1238)
108 KOG1125 TPR repeat-containing 98.6 3.6E-06 7.8E-11 82.3 17.8 245 224-473 295-565 (579)
109 KOG1070 rRNA processing protei 98.6 1E-05 2.2E-10 86.8 22.1 199 346-548 1455-1666(1710)
110 KOG1128 Uncharacterized conser 98.5 1E-05 2.2E-10 81.4 19.6 197 344-556 393-591 (777)
111 PRK15359 type III secretion sy 98.5 3.6E-06 7.8E-11 70.7 14.1 121 402-527 15-137 (144)
112 PF12854 PPR_1: PPR repeat 98.5 1.6E-07 3.4E-12 56.0 4.2 33 244-276 2-34 (34)
113 PLN02789 farnesyltranstransfer 98.5 6.5E-05 1.4E-09 71.9 24.3 213 328-543 51-300 (320)
114 PF12854 PPR_1: PPR repeat 98.5 2.2E-07 4.9E-12 55.3 4.2 32 410-441 2-33 (34)
115 KOG1128 Uncharacterized conser 98.4 3.7E-05 8E-10 77.5 20.8 215 245-476 394-613 (777)
116 PRK15179 Vi polysaccharide bio 98.4 1.8E-05 3.8E-10 83.5 19.9 206 379-597 85-315 (694)
117 PRK15359 type III secretion sy 98.4 3.1E-06 6.8E-11 71.1 11.6 108 436-547 14-123 (144)
118 PRK10370 formate-dependent nit 98.4 3.3E-05 7.2E-10 68.7 18.2 156 355-520 22-182 (198)
119 KOG1914 mRNA cleavage and poly 98.3 0.0043 9.4E-08 60.9 37.3 209 331-542 310-536 (656)
120 COG5010 TadD Flp pilus assembl 98.3 5.7E-05 1.2E-09 67.0 16.7 126 419-545 70-197 (257)
121 PRK15363 pathogenicity island 98.3 2.6E-05 5.6E-10 64.4 13.3 120 449-591 34-155 (157)
122 COG4783 Putative Zn-dependent 98.3 0.00031 6.6E-09 68.0 22.1 236 286-546 208-455 (484)
123 KOG1914 mRNA cleavage and poly 98.3 0.0053 1.2E-07 60.3 36.5 129 44-176 18-165 (656)
124 KOG2053 Mitochondrial inherita 98.3 0.0088 1.9E-07 62.4 36.2 65 485-549 439-506 (932)
125 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 5.1E-05 1.1E-09 74.0 16.6 124 416-543 170-295 (395)
126 TIGR03302 OM_YfiO outer membra 98.2 0.0001 2.2E-09 68.4 17.8 181 313-513 32-234 (235)
127 PLN02789 farnesyltranstransfer 98.2 0.00024 5.2E-09 68.1 20.2 188 358-547 46-252 (320)
128 TIGR02552 LcrH_SycD type III s 98.2 2.2E-05 4.8E-10 65.5 11.7 97 450-546 17-115 (135)
129 KOG1070 rRNA processing protei 98.2 0.0007 1.5E-08 73.4 24.4 197 217-414 1461-1668(1710)
130 PRK14720 transcript cleavage f 98.2 0.00021 4.5E-09 76.5 20.7 213 279-527 30-268 (906)
131 KOG3081 Vesicle coat complex C 98.2 0.00066 1.4E-08 60.4 20.0 152 356-513 115-273 (299)
132 COG5010 TadD Flp pilus assembl 98.2 0.00031 6.7E-09 62.5 18.0 153 386-540 72-226 (257)
133 PRK15179 Vi polysaccharide bio 98.1 0.00045 9.8E-09 73.1 22.1 143 344-489 81-229 (694)
134 TIGR00756 PPR pentatricopeptid 98.1 4.5E-06 9.6E-11 50.6 4.4 35 78-112 1-35 (35)
135 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00014 3.1E-09 71.0 16.2 128 352-481 172-299 (395)
136 TIGR00756 PPR pentatricopeptid 98.1 6.9E-06 1.5E-10 49.8 4.4 34 180-213 1-34 (35)
137 KOG3081 Vesicle coat complex C 98.1 0.0042 9E-08 55.5 22.9 148 388-544 116-270 (299)
138 COG4783 Putative Zn-dependent 98.1 0.00056 1.2E-08 66.3 19.0 178 363-544 251-436 (484)
139 PF13812 PPR_3: Pentatricopept 98.0 7E-06 1.5E-10 49.3 4.0 33 78-110 2-34 (34)
140 KOG3060 Uncharacterized conser 98.0 0.00081 1.8E-08 59.4 18.0 187 327-515 25-224 (289)
141 PRK14720 transcript cleavage f 98.0 0.0055 1.2E-07 65.9 27.6 30 178-207 30-59 (906)
142 KOG2053 Mitochondrial inherita 98.0 0.029 6.4E-07 58.7 37.8 481 49-543 44-606 (932)
143 TIGR02552 LcrH_SycD type III s 98.0 0.00021 4.6E-09 59.5 13.7 113 402-517 5-120 (135)
144 PF13812 PPR_3: Pentatricopept 98.0 1.5E-05 3.3E-10 47.9 4.6 33 381-413 2-34 (34)
145 KOG3060 Uncharacterized conser 97.9 0.00086 1.9E-08 59.2 16.3 183 362-547 25-222 (289)
146 PF09976 TPR_21: Tetratricopep 97.9 0.00079 1.7E-08 56.8 15.4 113 393-507 24-143 (145)
147 PF13414 TPR_11: TPR repeat; P 97.9 3.4E-05 7.4E-10 55.5 5.7 65 481-545 2-67 (69)
148 cd00189 TPR Tetratricopeptide 97.8 0.00017 3.8E-09 55.4 9.9 93 453-545 3-97 (100)
149 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00023 4.9E-09 57.8 10.7 94 453-546 5-106 (119)
150 PF12895 Apc3: Anaphase-promot 97.8 2.5E-05 5.5E-10 58.7 4.5 77 464-541 3-83 (84)
151 PF09976 TPR_21: Tetratricopep 97.8 0.00088 1.9E-08 56.5 14.2 124 417-542 14-144 (145)
152 PF13432 TPR_16: Tetratricopep 97.8 5.9E-05 1.3E-09 53.4 6.0 60 488-547 3-62 (65)
153 PF01535 PPR: PPR repeat; Int 97.7 4.1E-05 9E-10 44.7 3.6 31 78-108 1-31 (31)
154 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00061 1.3E-08 55.2 11.7 103 417-519 4-113 (119)
155 COG4700 Uncharacterized protei 97.7 0.0082 1.8E-07 50.5 17.4 153 389-544 65-221 (251)
156 PLN03088 SGT1, suppressor of 97.7 0.00036 7.9E-09 68.5 11.0 107 422-529 9-117 (356)
157 KOG0553 TPR repeat-containing 97.7 0.00047 1E-08 62.6 10.6 106 425-531 91-198 (304)
158 PF01535 PPR: PPR repeat; Int 97.7 6.2E-05 1.3E-09 44.0 3.5 31 180-210 1-31 (31)
159 KOG0553 TPR repeat-containing 97.6 0.00022 4.9E-09 64.6 8.3 87 458-544 89-177 (304)
160 PF04840 Vps16_C: Vps16, C-ter 97.6 0.071 1.5E-06 51.1 30.3 109 352-476 180-288 (319)
161 COG4235 Cytochrome c biogenesi 97.6 0.0016 3.5E-08 59.6 12.8 107 447-553 153-264 (287)
162 PRK02603 photosystem I assembl 97.6 0.00081 1.8E-08 58.7 10.8 93 452-544 37-148 (172)
163 PRK02603 photosystem I assembl 97.6 0.0027 5.9E-08 55.3 13.8 130 380-531 35-166 (172)
164 PLN03088 SGT1, suppressor of 97.5 0.0015 3.3E-08 64.2 13.0 104 387-492 9-113 (356)
165 PF13371 TPR_9: Tetratricopept 97.5 0.00031 6.8E-09 51.1 6.3 59 489-547 2-60 (73)
166 PF14559 TPR_19: Tetratricopep 97.5 0.00013 2.8E-09 52.2 4.0 55 493-547 2-56 (68)
167 PF08579 RPM2: Mitochondrial r 97.5 0.0018 3.9E-08 49.6 9.8 79 384-462 29-116 (120)
168 PF08579 RPM2: Mitochondrial r 97.5 0.0017 3.7E-08 49.8 9.7 80 182-261 28-116 (120)
169 CHL00033 ycf3 photosystem I as 97.5 0.0012 2.6E-08 57.3 10.5 94 450-543 35-140 (168)
170 PF04840 Vps16_C: Vps16, C-ter 97.4 0.13 2.7E-06 49.4 27.5 105 251-371 179-284 (319)
171 PRK10866 outer membrane biogen 97.4 0.02 4.4E-07 52.8 18.1 74 33-106 19-98 (243)
172 PRK10153 DNA-binding transcrip 97.4 0.0057 1.2E-07 62.9 15.8 64 483-547 421-484 (517)
173 PF12895 Apc3: Anaphase-promot 97.4 0.00041 8.9E-09 52.1 5.7 81 393-475 2-83 (84)
174 cd00189 TPR Tetratricopeptide 97.4 0.0021 4.6E-08 49.1 10.1 90 384-475 4-93 (100)
175 PF10037 MRP-S27: Mitochondria 97.4 0.0017 3.7E-08 63.9 11.1 83 180-262 104-186 (429)
176 PF14938 SNAP: Soluble NSF att 97.4 0.021 4.5E-07 54.3 18.3 109 356-476 101-222 (282)
177 KOG0550 Molecular chaperone (D 97.3 0.01 2.2E-07 56.5 15.2 153 388-545 177-350 (486)
178 PF07079 DUF1347: Protein of u 97.3 0.19 4.1E-06 48.8 34.0 190 350-543 299-522 (549)
179 PF10037 MRP-S27: Mitochondria 97.3 0.0058 1.3E-07 60.3 13.8 119 310-428 62-186 (429)
180 PF13432 TPR_16: Tetratricopep 97.3 0.00072 1.6E-08 47.8 5.5 61 456-516 3-65 (65)
181 KOG2280 Vacuolar assembly/sort 97.3 0.31 6.7E-06 50.4 30.3 201 42-243 335-575 (829)
182 KOG1538 Uncharacterized conser 97.3 0.014 3E-07 58.7 15.8 241 247-508 554-843 (1081)
183 PRK15363 pathogenicity island 97.3 0.011 2.5E-07 49.0 13.0 105 169-275 24-129 (157)
184 PF05843 Suf: Suppressor of fo 97.3 0.01 2.2E-07 56.2 14.7 131 382-514 3-139 (280)
185 PRK10153 DNA-binding transcrip 97.2 0.015 3.3E-07 59.8 16.8 139 377-517 334-488 (517)
186 PF06239 ECSIT: Evolutionarily 97.2 0.0039 8.5E-08 54.3 9.9 97 369-465 34-153 (228)
187 PF13431 TPR_17: Tetratricopep 97.2 0.00028 6.1E-09 41.9 2.1 33 505-537 2-34 (34)
188 CHL00033 ycf3 photosystem I as 97.1 0.0096 2.1E-07 51.7 12.4 62 382-443 37-100 (168)
189 PF06239 ECSIT: Evolutionarily 97.1 0.0039 8.4E-08 54.3 9.3 97 168-264 34-153 (228)
190 PRK10803 tol-pal system protei 97.1 0.0042 9.1E-08 57.7 10.2 94 452-545 145-246 (263)
191 PRK10866 outer membrane biogen 97.0 0.25 5.5E-06 45.5 20.8 81 76-158 31-115 (243)
192 PF14559 TPR_19: Tetratricopep 97.0 0.0012 2.7E-08 47.0 4.3 61 427-488 3-64 (68)
193 PF05843 Suf: Suppressor of fo 96.9 0.013 2.8E-07 55.5 12.2 129 416-545 2-136 (280)
194 PRK15331 chaperone protein Sic 96.9 0.023 4.9E-07 47.5 11.8 89 456-544 43-133 (165)
195 KOG1538 Uncharacterized conser 96.9 0.065 1.4E-06 54.1 16.9 169 184-377 603-801 (1081)
196 PF12688 TPR_5: Tetratrico pep 96.9 0.015 3.2E-07 46.6 10.4 52 489-540 45-99 (120)
197 KOG2796 Uncharacterized conser 96.8 0.089 1.9E-06 47.1 14.8 125 422-546 184-316 (366)
198 PF13414 TPR_11: TPR repeat; P 96.8 0.0032 7E-08 45.0 5.2 65 449-513 2-69 (69)
199 PF14938 SNAP: Soluble NSF att 96.8 0.024 5.3E-07 53.9 12.6 94 452-545 116-225 (282)
200 COG3898 Uncharacterized membra 96.7 0.56 1.2E-05 44.8 26.2 238 295-545 136-392 (531)
201 KOG2041 WD40 repeat protein [G 96.7 0.88 1.9E-05 46.8 25.7 200 109-338 689-902 (1189)
202 PF12688 TPR_5: Tetratrico pep 96.7 0.045 9.7E-07 43.8 11.8 104 186-290 8-116 (120)
203 KOG1258 mRNA processing protei 96.7 0.82 1.8E-05 46.4 32.5 408 76-531 44-490 (577)
204 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.0073 1.6E-07 59.0 8.6 65 481-545 74-141 (453)
205 KOG0543 FKBP-type peptidyl-pro 96.7 0.015 3.3E-07 55.5 10.3 66 482-547 257-322 (397)
206 PF13281 DUF4071: Domain of un 96.7 0.32 7E-06 47.2 19.3 160 354-515 146-338 (374)
207 KOG2796 Uncharacterized conser 96.7 0.16 3.4E-06 45.6 15.5 138 282-421 179-325 (366)
208 KOG1130 Predicted G-alpha GTPa 96.7 0.014 3.1E-07 55.4 9.7 127 417-543 197-342 (639)
209 KOG2041 WD40 repeat protein [G 96.6 1.1 2.4E-05 46.2 27.4 192 59-278 676-881 (1189)
210 KOG1130 Predicted G-alpha GTPa 96.6 0.068 1.5E-06 51.0 13.6 129 382-510 197-343 (639)
211 PRK10803 tol-pal system protei 96.6 0.035 7.6E-07 51.6 11.8 100 417-516 145-251 (263)
212 KOG0550 Molecular chaperone (D 96.6 0.74 1.6E-05 44.4 20.2 269 186-476 56-347 (486)
213 COG4700 Uncharacterized protei 96.6 0.4 8.7E-06 40.8 17.5 120 347-470 87-213 (251)
214 PF13428 TPR_14: Tetratricopep 96.5 0.0043 9.3E-08 39.6 4.0 42 483-524 2-43 (44)
215 PF13371 TPR_9: Tetratricopept 96.4 0.01 2.3E-07 42.9 6.1 61 458-518 3-65 (73)
216 PF13424 TPR_12: Tetratricopep 96.4 0.0055 1.2E-07 45.1 4.4 62 483-544 6-74 (78)
217 KOG2280 Vacuolar assembly/sort 96.4 1.6 3.5E-05 45.5 27.5 114 414-542 683-796 (829)
218 COG3898 Uncharacterized membra 96.3 1.1 2.3E-05 43.0 26.6 108 163-276 99-215 (531)
219 COG4235 Cytochrome c biogenesi 96.1 0.2 4.2E-06 46.3 13.7 103 413-516 154-261 (287)
220 PF03704 BTAD: Bacterial trans 96.1 0.025 5.5E-07 47.7 7.5 68 484-551 64-136 (146)
221 PF12921 ATP13: Mitochondrial 96.1 0.08 1.7E-06 42.8 9.8 51 410-460 47-98 (126)
222 PF14432 DYW_deaminase: DYW fa 96.1 0.006 1.3E-07 48.5 3.3 45 552-608 2-46 (116)
223 PF13525 YfiO: Outer membrane 96.0 0.5 1.1E-05 42.4 15.8 141 386-545 11-170 (203)
224 PF13525 YfiO: Outer membrane 95.9 0.49 1.1E-05 42.4 15.5 163 356-536 12-198 (203)
225 PF13424 TPR_12: Tetratricopep 95.9 0.013 2.7E-07 43.1 4.2 25 417-441 7-31 (78)
226 PF03704 BTAD: Bacterial trans 95.9 0.15 3.3E-06 42.9 11.3 70 383-453 65-139 (146)
227 PF09205 DUF1955: Domain of un 95.7 0.84 1.8E-05 36.5 14.7 141 390-548 12-152 (161)
228 COG0457 NrfG FOG: TPR repeat [ 95.6 1.7 3.6E-05 39.5 27.1 197 349-546 59-266 (291)
229 PF13512 TPR_18: Tetratricopep 95.5 0.36 7.8E-06 39.5 11.4 89 457-545 17-128 (142)
230 KOG0543 FKBP-type peptidyl-pro 95.5 0.27 5.8E-06 47.3 12.1 95 451-545 258-355 (397)
231 PLN03098 LPA1 LOW PSII ACCUMUL 95.3 0.1 2.2E-06 51.3 9.0 62 450-511 75-141 (453)
232 PRK11906 transcriptional regul 95.2 1.2 2.5E-05 44.3 15.9 145 395-541 273-432 (458)
233 KOG3941 Intermediate in Toll s 95.2 0.15 3.3E-06 46.2 9.1 109 66-174 54-185 (406)
234 COG5107 RNA14 Pre-mRNA 3'-end 95.2 3.5 7.5E-05 40.5 32.0 132 380-514 397-534 (660)
235 smart00299 CLH Clathrin heavy 95.1 1.4 3E-05 36.6 14.6 43 117-160 12-54 (140)
236 COG3118 Thioredoxin domain-con 95.0 2.1 4.5E-05 39.7 15.8 50 391-441 145-194 (304)
237 PF13281 DUF4071: Domain of un 95.0 2.3 5E-05 41.5 17.1 164 382-545 143-334 (374)
238 KOG4234 TPR repeat-containing 95.0 0.096 2.1E-06 44.9 6.8 90 458-547 103-199 (271)
239 KOG1941 Acetylcholine receptor 95.0 0.52 1.1E-05 44.5 12.0 51 491-541 215-271 (518)
240 COG3118 Thioredoxin domain-con 94.9 1.6 3.4E-05 40.5 14.8 122 423-546 142-266 (304)
241 KOG3941 Intermediate in Toll s 94.9 0.22 4.8E-06 45.2 9.2 97 167-263 53-172 (406)
242 PF04184 ST7: ST7 protein; In 94.9 0.57 1.2E-05 46.5 12.7 150 385-545 173-324 (539)
243 COG1729 Uncharacterized protei 94.9 0.31 6.7E-06 44.5 10.3 93 452-547 144-246 (262)
244 smart00299 CLH Clathrin heavy 94.9 1.9 4.1E-05 35.8 15.6 125 384-527 11-136 (140)
245 KOG1585 Protein required for f 94.7 2.8 6.1E-05 37.6 15.1 199 316-539 33-250 (308)
246 PRK15331 chaperone protein Sic 94.5 1 2.3E-05 37.8 11.8 87 423-510 45-133 (165)
247 PF12921 ATP13: Mitochondrial 94.5 0.6 1.3E-05 37.8 10.1 96 313-426 1-99 (126)
248 PF07079 DUF1347: Protein of u 94.5 5.5 0.00012 39.3 37.9 125 361-489 391-532 (549)
249 COG4105 ComL DNA uptake lipopr 94.3 4.1 9E-05 37.0 19.4 55 490-544 175-232 (254)
250 KOG1920 IkappaB kinase complex 94.2 11 0.00024 41.9 22.1 139 355-508 914-1052(1265)
251 KOG4555 TPR repeat-containing 94.2 0.51 1.1E-05 37.5 8.7 89 459-547 52-146 (175)
252 KOG2114 Vacuolar assembly/sort 94.0 3 6.5E-05 44.2 16.1 178 316-507 336-515 (933)
253 PF00515 TPR_1: Tetratricopept 93.9 0.1 2.2E-06 30.8 3.6 31 484-514 3-33 (34)
254 PF07719 TPR_2: Tetratricopept 93.8 0.15 3.2E-06 30.0 4.2 31 484-514 3-33 (34)
255 KOG2610 Uncharacterized conser 93.6 0.89 1.9E-05 42.5 10.5 159 391-551 114-282 (491)
256 COG5107 RNA14 Pre-mRNA 3'-end 93.6 8.2 0.00018 38.1 29.0 127 416-543 398-529 (660)
257 PF04053 Coatomer_WDAD: Coatom 93.5 2.4 5.2E-05 42.9 14.5 158 86-276 270-429 (443)
258 PF10300 DUF3808: Protein of u 93.5 4.8 0.0001 41.4 17.0 87 353-441 192-293 (468)
259 PRK11906 transcriptional regul 93.4 0.97 2.1E-05 44.8 11.1 118 430-547 273-403 (458)
260 PF04053 Coatomer_WDAD: Coatom 93.4 3.7 8E-05 41.6 15.5 157 187-374 269-427 (443)
261 PF13176 TPR_7: Tetratricopept 93.2 0.19 4.1E-06 30.2 3.9 26 518-543 1-26 (36)
262 COG1729 Uncharacterized protei 93.2 0.96 2.1E-05 41.4 9.9 60 456-515 184-248 (262)
263 PF13512 TPR_18: Tetratricopep 93.1 3.1 6.7E-05 34.2 11.9 114 388-516 18-133 (142)
264 COG1747 Uncharacterized N-term 93.1 10 0.00023 38.0 23.2 193 346-543 63-286 (711)
265 PF02259 FAT: FAT domain; Int 93.1 9.7 0.00021 37.5 20.2 149 379-529 145-305 (352)
266 PF10300 DUF3808: Protein of u 92.9 3.9 8.4E-05 42.0 15.2 127 317-443 191-333 (468)
267 PF13170 DUF4003: Protein of u 92.8 1.9 4E-05 41.1 11.9 62 296-357 160-225 (297)
268 PF07035 Mic1: Colon cancer-as 92.8 3.2 7E-05 35.3 12.0 136 97-243 14-149 (167)
269 COG3629 DnrI DNA-binding trans 92.7 0.56 1.2E-05 43.5 8.0 61 484-544 155-215 (280)
270 KOG4555 TPR repeat-containing 92.7 0.35 7.5E-06 38.4 5.5 55 490-544 51-105 (175)
271 PF13170 DUF4003: Protein of u 92.6 9.6 0.00021 36.3 20.2 62 397-458 160-225 (297)
272 COG0457 NrfG FOG: TPR repeat [ 92.6 7.6 0.00016 35.0 26.5 199 314-514 59-268 (291)
273 PF04184 ST7: ST7 protein; In 92.2 10 0.00022 38.1 16.0 96 419-514 263-378 (539)
274 PF13428 TPR_14: Tetratricopep 92.1 0.3 6.4E-06 30.9 4.0 31 517-547 2-32 (44)
275 PF09205 DUF1955: Domain of un 92.1 5.4 0.00012 32.1 12.4 65 382-447 88-152 (161)
276 PF04097 Nic96: Nup93/Nic96; 91.9 20 0.00044 38.4 23.6 49 77-126 111-159 (613)
277 KOG2610 Uncharacterized conser 91.8 5.7 0.00012 37.4 13.1 178 360-539 114-309 (491)
278 KOG2114 Vacuolar assembly/sort 91.7 22 0.00047 38.2 28.8 54 456-510 711-764 (933)
279 KOG1941 Acetylcholine receptor 91.6 7.9 0.00017 37.0 13.9 217 260-476 17-272 (518)
280 KOG0890 Protein kinase of the 91.4 41 0.00088 40.9 29.5 64 482-547 1670-1733(2382)
281 PRK09687 putative lyase; Provi 91.3 13 0.00029 35.1 27.3 74 347-425 204-277 (280)
282 KOG1920 IkappaB kinase complex 91.2 30 0.00064 38.9 22.7 150 263-440 894-1051(1265)
283 COG4649 Uncharacterized protei 90.9 1.9 4.1E-05 36.4 8.2 125 88-213 69-201 (221)
284 PRK09687 putative lyase; Provi 90.9 15 0.00032 34.8 26.3 17 414-430 205-221 (280)
285 KOG4648 Uncharacterized conser 90.8 0.56 1.2E-05 43.9 5.7 109 422-536 104-215 (536)
286 KOG0403 Neoplastic transformat 90.8 18 0.00039 35.7 18.9 70 353-426 513-585 (645)
287 PRK11619 lytic murein transgly 90.6 27 0.00059 37.5 29.5 115 393-509 254-373 (644)
288 PF10602 RPN7: 26S proteasome 90.6 4.3 9.4E-05 35.3 10.9 93 382-476 38-139 (177)
289 PF13181 TPR_8: Tetratricopept 90.5 0.41 8.9E-06 28.1 3.2 30 484-513 3-32 (34)
290 PF10345 Cohesin_load: Cohesin 90.5 28 0.00061 37.4 32.8 80 163-242 154-253 (608)
291 PF09613 HrpB1_HrpK: Bacterial 90.2 2.2 4.7E-05 35.9 8.1 82 451-532 8-94 (160)
292 PF02259 FAT: FAT domain; Int 90.0 21 0.00045 35.2 17.0 66 480-545 144-213 (352)
293 COG4649 Uncharacterized protei 90.0 11 0.00024 32.0 12.3 52 493-544 143-195 (221)
294 PF07035 Mic1: Colon cancer-as 90.0 11 0.00025 32.1 16.2 132 235-408 15-148 (167)
295 PF13176 TPR_7: Tetratricopept 89.7 0.51 1.1E-05 28.3 3.2 27 484-510 1-27 (36)
296 KOG1585 Protein required for f 89.6 15 0.00034 33.1 15.2 55 418-473 193-250 (308)
297 COG4105 ComL DNA uptake lipopr 89.2 18 0.00038 33.2 17.2 61 455-515 172-237 (254)
298 PF09613 HrpB1_HrpK: Bacterial 88.8 13 0.00029 31.3 12.6 87 425-513 20-108 (160)
299 TIGR02561 HrpB1_HrpK type III 88.8 1.9 4.2E-05 35.4 6.7 69 463-531 23-93 (153)
300 PF07719 TPR_2: Tetratricopept 88.6 0.7 1.5E-05 27.0 3.2 29 517-545 2-30 (34)
301 PF00515 TPR_1: Tetratricopept 88.6 0.71 1.5E-05 27.0 3.2 30 517-546 2-31 (34)
302 KOG2066 Vacuolar assembly/sort 88.4 38 0.00083 36.1 24.4 95 397-502 611-710 (846)
303 COG3629 DnrI DNA-binding trans 88.4 5.3 0.00011 37.3 10.1 75 384-459 157-236 (280)
304 COG4785 NlpI Lipoprotein NlpI, 88.4 14 0.00029 32.8 11.8 179 361-547 77-268 (297)
305 COG2976 Uncharacterized protei 88.3 17 0.00036 31.7 12.9 23 490-512 167-189 (207)
306 PF10602 RPN7: 26S proteasome 87.9 5.9 0.00013 34.4 9.8 95 180-276 37-140 (177)
307 KOG2066 Vacuolar assembly/sort 87.8 42 0.00091 35.9 23.3 146 53-207 363-533 (846)
308 PF07721 TPR_4: Tetratricopept 86.9 1 2.2E-05 24.6 2.9 24 517-540 2-25 (26)
309 PF14853 Fis1_TPR_C: Fis1 C-te 86.5 5.5 0.00012 26.4 6.7 27 519-545 4-30 (53)
310 PF00637 Clathrin: Region in C 86.0 0.8 1.7E-05 38.3 3.3 85 386-477 13-97 (143)
311 KOG1258 mRNA processing protei 86.0 46 0.00099 34.4 27.1 44 493-536 377-420 (577)
312 PF13374 TPR_10: Tetratricopep 85.9 1.5 3.3E-05 26.9 3.9 28 517-544 3-30 (42)
313 PRK10941 hypothetical protein; 85.7 3.7 8.1E-05 38.3 7.7 62 486-547 185-246 (269)
314 KOG4570 Uncharacterized conser 85.1 8.1 0.00018 36.2 9.2 101 142-244 59-165 (418)
315 PF00637 Clathrin: Region in C 85.1 1.8 3.8E-05 36.2 5.0 77 51-134 12-92 (143)
316 PF08631 SPO22: Meiosis protei 84.9 36 0.00077 32.3 25.5 97 217-314 87-192 (278)
317 PF13174 TPR_6: Tetratricopept 84.9 1.1 2.4E-05 25.8 2.7 28 518-545 2-29 (33)
318 KOG4648 Uncharacterized conser 84.9 2.7 5.9E-05 39.6 6.2 79 387-475 104-183 (536)
319 KOG0545 Aryl-hydrocarbon recep 84.8 22 0.00049 32.1 11.4 58 490-547 238-295 (329)
320 KOG4570 Uncharacterized conser 84.4 17 0.00037 34.2 10.9 102 243-344 58-165 (418)
321 PF13431 TPR_17: Tetratricopep 84.1 1.9 4.1E-05 25.4 3.3 31 238-269 3-33 (34)
322 PF13181 TPR_8: Tetratricopept 84.0 2.5 5.4E-05 24.6 4.0 28 517-544 2-29 (34)
323 TIGR02561 HrpB1_HrpK type III 83.6 10 0.00023 31.3 8.4 109 415-543 7-120 (153)
324 KOG1550 Extracellular protein 83.6 59 0.0013 34.5 16.4 114 330-445 228-358 (552)
325 KOG1586 Protein required for f 83.3 34 0.00074 30.8 16.1 90 456-545 119-224 (288)
326 PF04097 Nic96: Nup93/Nic96; 82.5 75 0.0016 34.1 21.4 215 44-277 110-355 (613)
327 COG1747 Uncharacterized N-term 82.4 60 0.0013 33.0 19.2 171 280-458 66-247 (711)
328 KOG4234 TPR repeat-containing 82.1 16 0.00034 32.0 9.2 99 425-523 105-209 (271)
329 PF13174 TPR_6: Tetratricopept 81.4 2.2 4.9E-05 24.4 3.0 28 487-514 5-32 (33)
330 COG2976 Uncharacterized protei 81.2 37 0.0008 29.7 13.1 88 458-546 97-189 (207)
331 PF06552 TOM20_plant: Plant sp 81.1 2.1 4.5E-05 36.6 3.7 45 498-542 51-99 (186)
332 PF02284 COX5A: Cytochrome c o 80.8 15 0.00033 28.1 7.6 60 398-459 28-88 (108)
333 KOG3364 Membrane protein invol 80.7 26 0.00057 28.5 9.4 25 490-514 79-103 (149)
334 COG4785 NlpI Lipoprotein NlpI, 80.5 3.8 8.2E-05 36.1 5.1 89 425-516 75-167 (297)
335 PRK15180 Vi polysaccharide bio 80.2 27 0.00059 34.8 11.2 87 426-513 334-422 (831)
336 TIGR03504 FimV_Cterm FimV C-te 79.7 3.4 7.3E-05 26.1 3.4 27 520-546 3-29 (44)
337 cd00923 Cyt_c_Oxidase_Va Cytoc 79.7 17 0.00037 27.5 7.5 62 395-458 22-84 (103)
338 PF04910 Tcf25: Transcriptiona 79.2 69 0.0015 31.7 15.1 64 481-544 99-167 (360)
339 KOG4642 Chaperone-dependent E3 79.0 7.3 0.00016 35.0 6.4 53 490-542 52-104 (284)
340 TIGR02508 type_III_yscG type I 78.9 27 0.00058 26.7 9.3 62 356-420 46-107 (115)
341 smart00028 TPR Tetratricopepti 78.4 4 8.7E-05 22.5 3.6 25 519-543 4-28 (34)
342 KOG0276 Vesicle coat complex C 78.3 23 0.00049 36.6 10.3 99 361-476 649-747 (794)
343 COG4455 ImpE Protein of avirul 78.2 10 0.00023 33.5 7.0 63 453-515 4-68 (273)
344 COG3947 Response regulator con 78.0 8.3 0.00018 35.7 6.6 58 487-544 284-341 (361)
345 PF13374 TPR_10: Tetratricopep 77.9 5.4 0.00012 24.3 4.2 28 381-408 3-30 (42)
346 PF11207 DUF2989: Protein of u 77.8 32 0.0007 30.3 9.9 79 290-369 117-198 (203)
347 cd00923 Cyt_c_Oxidase_Va Cytoc 77.7 21 0.00045 27.0 7.5 59 297-356 25-83 (103)
348 PF08631 SPO22: Meiosis protei 77.5 66 0.0014 30.5 25.6 20 490-509 254-273 (278)
349 KOG1550 Extracellular protein 77.4 1E+02 0.0022 32.7 20.9 212 329-546 308-539 (552)
350 KOG0376 Serine-threonine phosp 76.8 6.4 0.00014 39.2 6.0 87 458-544 12-100 (476)
351 PRK11619 lytic murein transgly 76.3 1.2E+02 0.0026 32.8 38.8 377 153-550 105-510 (644)
352 PF09986 DUF2225: Uncharacteri 76.1 17 0.00036 32.8 8.2 60 488-547 124-196 (214)
353 KOG0991 Replication factor C, 75.7 62 0.0013 29.3 11.5 150 49-224 133-282 (333)
354 PF11207 DUF2989: Protein of u 75.0 38 0.00083 29.8 9.6 72 397-469 123-197 (203)
355 PF14561 TPR_20: Tetratricopep 74.9 7.7 0.00017 29.2 4.9 46 502-547 8-53 (90)
356 PF02284 COX5A: Cytochrome c o 74.2 28 0.0006 26.7 7.4 60 297-357 28-87 (108)
357 KOG1308 Hsp70-interacting prot 74.0 2.8 6.1E-05 39.6 2.8 89 462-550 126-216 (377)
358 PF13762 MNE1: Mitochondrial s 73.3 40 0.00087 28.0 8.9 78 48-125 41-128 (145)
359 PRK15180 Vi polysaccharide bio 73.2 1.1E+02 0.0023 30.9 28.6 86 157-244 333-421 (831)
360 smart00028 TPR Tetratricopepti 73.0 7 0.00015 21.4 3.6 30 484-513 3-32 (34)
361 PF14853 Fis1_TPR_C: Fis1 C-te 72.8 7.8 0.00017 25.7 3.9 31 487-517 6-36 (53)
362 KOG2063 Vacuolar assembly/sort 71.7 1.1E+02 0.0024 34.0 14.1 26 80-105 507-532 (877)
363 COG2909 MalT ATP-dependent tra 71.4 1.7E+02 0.0036 32.3 24.9 52 192-243 471-526 (894)
364 KOG1464 COP9 signalosome, subu 70.3 91 0.002 28.8 17.1 176 295-470 43-251 (440)
365 PF09670 Cas_Cas02710: CRISPR- 70.2 76 0.0017 31.6 12.0 52 391-443 142-197 (379)
366 PF04190 DUF410: Protein of un 68.7 1E+02 0.0022 28.8 16.9 158 58-243 2-170 (260)
367 PF10579 Rapsyn_N: Rapsyn N-te 68.3 14 0.0003 26.8 4.5 45 494-538 18-65 (80)
368 COG4455 ImpE Protein of avirul 67.2 95 0.0021 27.8 12.9 122 382-513 3-136 (273)
369 COG5159 RPN6 26S proteasome re 67.0 65 0.0014 30.0 9.6 136 386-543 9-152 (421)
370 PF10579 Rapsyn_N: Rapsyn N-te 66.5 20 0.00043 26.0 5.1 46 392-437 18-65 (80)
371 TIGR02508 type_III_yscG type I 65.6 59 0.0013 24.9 8.8 84 230-317 21-105 (115)
372 PF14669 Asp_Glu_race_2: Putat 65.4 94 0.002 27.1 15.3 56 319-374 137-206 (233)
373 KOG0276 Vesicle coat complex C 65.3 1.1E+02 0.0023 32.0 11.6 130 353-508 618-747 (794)
374 KOG0890 Protein kinase of the 63.2 3.8E+02 0.0083 33.4 28.0 58 416-476 1671-1728(2382)
375 smart00386 HAT HAT (Half-A-TPR 63.1 12 0.00027 21.0 3.2 30 496-525 1-30 (33)
376 TIGR03504 FimV_Cterm FimV C-te 62.8 20 0.00043 22.7 4.0 24 386-409 5-28 (44)
377 COG4976 Predicted methyltransf 62.6 17 0.00037 32.5 5.0 55 493-547 6-60 (287)
378 KOG4507 Uncharacterized conser 62.1 22 0.00048 36.4 6.3 100 427-526 619-720 (886)
379 KOG3807 Predicted membrane pro 60.5 91 0.002 29.7 9.5 57 385-443 280-339 (556)
380 PF06552 TOM20_plant: Plant sp 60.4 33 0.00072 29.6 6.2 43 498-547 96-138 (186)
381 smart00638 LPD_N Lipoprotein N 59.4 2.5E+02 0.0054 30.0 23.4 59 147-208 310-369 (574)
382 KOG3824 Huntingtin interacting 58.4 31 0.00067 32.3 6.1 46 494-539 128-173 (472)
383 KOG2422 Uncharacterized conser 57.5 2.2E+02 0.0047 29.7 12.1 122 425-546 248-408 (665)
384 PF11846 DUF3366: Domain of un 57.2 23 0.00051 31.3 5.3 35 479-513 141-175 (193)
385 PF08311 Mad3_BUB1_I: Mad3/BUB 57.2 84 0.0018 25.4 8.0 42 500-541 81-124 (126)
386 PF13929 mRNA_stabil: mRNA sta 57.1 1.8E+02 0.0038 27.5 16.1 59 345-403 198-261 (292)
387 COG3947 Response regulator con 56.5 49 0.0011 30.9 7.0 50 389-439 288-337 (361)
388 cd08819 CARD_MDA5_2 Caspase ac 56.5 57 0.0012 24.3 6.0 35 163-198 51-85 (88)
389 PRK10941 hypothetical protein; 56.2 50 0.0011 31.0 7.3 64 454-517 185-250 (269)
390 KOG0551 Hsp90 co-chaperone CNS 56.1 48 0.001 31.7 7.0 93 452-544 83-181 (390)
391 PF07163 Pex26: Pex26 protein; 55.6 1.6E+02 0.0035 27.6 10.0 87 387-475 90-183 (309)
392 PF10366 Vps39_1: Vacuolar sor 55.5 74 0.0016 24.9 7.1 55 50-105 3-67 (108)
393 PF09477 Type_III_YscG: Bacter 54.9 1E+02 0.0022 24.1 7.8 78 229-309 21-99 (116)
394 PF13929 mRNA_stabil: mRNA sta 54.8 1.9E+02 0.0041 27.3 14.8 64 210-273 198-262 (292)
395 KOG2471 TPR repeat-containing 53.9 2.6E+02 0.0056 28.6 13.5 267 326-600 29-327 (696)
396 KOG4642 Chaperone-dependent E3 53.8 1.7E+02 0.0038 26.7 9.6 113 362-476 23-143 (284)
397 PF08967 DUF1884: Domain of un 53.6 14 0.0003 26.6 2.4 28 574-601 6-33 (85)
398 PF10345 Cohesin_load: Cohesin 53.2 3.2E+02 0.007 29.4 32.0 150 391-541 372-559 (608)
399 PF12862 Apc5: Anaphase-promot 53.0 43 0.00093 25.4 5.4 53 492-544 8-69 (94)
400 PF11848 DUF3368: Domain of un 52.7 60 0.0013 20.9 5.3 33 391-423 13-45 (48)
401 PF14863 Alkyl_sulf_dimr: Alky 52.6 55 0.0012 27.1 6.2 63 466-531 57-119 (141)
402 KOG1308 Hsp70-interacting prot 52.2 3.5 7.7E-05 39.0 -0.8 102 492-606 124-225 (377)
403 KOG2063 Vacuolar assembly/sort 52.1 3.5E+02 0.0076 30.3 13.6 29 516-544 684-712 (877)
404 PF09477 Type_III_YscG: Bacter 51.7 1.1E+02 0.0025 23.8 9.0 79 329-410 21-99 (116)
405 PF11848 DUF3368: Domain of un 51.4 59 0.0013 20.9 5.0 31 191-221 14-44 (48)
406 PF10366 Vps39_1: Vacuolar sor 51.2 78 0.0017 24.8 6.6 27 382-408 41-67 (108)
407 KOG1586 Protein required for f 50.5 2E+02 0.0043 26.2 15.5 55 460-514 164-227 (288)
408 cd08819 CARD_MDA5_2 Caspase ac 50.2 1E+02 0.0023 22.9 7.2 39 361-400 48-86 (88)
409 PF11846 DUF3366: Domain of un 49.9 61 0.0013 28.6 6.7 31 446-476 140-170 (193)
410 COG2178 Predicted RNA-binding 49.5 1.8E+02 0.004 25.5 9.7 52 257-308 37-98 (204)
411 COG5108 RPO41 Mitochondrial DN 49.2 77 0.0017 33.3 7.7 73 385-460 33-113 (1117)
412 PF04910 Tcf25: Transcriptiona 49.0 2.8E+02 0.006 27.5 18.7 55 422-476 110-165 (360)
413 PF10255 Paf67: RNA polymerase 48.6 1.4E+02 0.0029 30.0 9.2 57 351-407 124-191 (404)
414 TIGR02270 conserved hypothetic 48.3 3.1E+02 0.0067 27.8 26.1 121 347-477 159-279 (410)
415 KOG4077 Cytochrome c oxidase, 48.2 1.3E+02 0.0027 24.3 7.1 70 398-478 67-137 (149)
416 PRK10564 maltose regulon perip 47.9 34 0.00073 32.2 4.7 38 181-218 259-296 (303)
417 PRK13800 putative oxidoreducta 47.9 4.8E+02 0.01 29.8 27.7 256 269-544 624-880 (897)
418 PF14669 Asp_Glu_race_2: Putat 47.3 2E+02 0.0043 25.3 13.3 58 419-476 136-207 (233)
419 COG2909 MalT ATP-dependent tra 47.0 4.4E+02 0.0096 29.2 27.3 216 325-543 426-686 (894)
420 KOG0991 Replication factor C, 46.9 2.3E+02 0.005 25.9 10.5 56 368-425 227-282 (333)
421 KOG4507 Uncharacterized conser 46.1 98 0.0021 32.1 7.8 135 412-547 568-707 (886)
422 COG4941 Predicted RNA polymera 45.6 2.5E+02 0.0054 27.1 9.8 117 395-514 271-397 (415)
423 PF12968 DUF3856: Domain of Un 45.5 1.6E+02 0.0034 23.6 8.3 60 484-543 57-127 (144)
424 PF13762 MNE1: Mitochondrial s 45.1 1.8E+02 0.0039 24.2 11.0 51 279-329 78-130 (145)
425 PRK13342 recombination factor 44.6 3.5E+02 0.0076 27.4 17.0 44 181-224 229-275 (413)
426 COG4976 Predicted methyltransf 44.4 37 0.0008 30.5 4.2 56 460-515 5-62 (287)
427 PF08311 Mad3_BUB1_I: Mad3/BUB 44.1 1.7E+02 0.0037 23.7 7.9 42 398-439 81-123 (126)
428 KOG0403 Neoplastic transformat 43.3 3.6E+02 0.0079 27.2 25.5 62 486-547 513-574 (645)
429 PF11663 Toxin_YhaV: Toxin wit 43.3 36 0.00077 27.7 3.6 33 88-122 106-138 (140)
430 cd00280 TRFH Telomeric Repeat 43.2 1.5E+02 0.0032 25.8 7.3 25 490-515 119-143 (200)
431 PF14689 SPOB_a: Sensor_kinase 43.0 40 0.00087 23.2 3.4 29 516-544 23-51 (62)
432 COG0735 Fur Fe2+/Zn2+ uptake r 42.9 1.4E+02 0.0031 24.8 7.4 47 182-228 23-69 (145)
433 PRK10564 maltose regulon perip 42.9 52 0.0011 31.1 5.1 39 382-420 259-297 (303)
434 COG2912 Uncharacterized conser 42.8 71 0.0015 29.7 5.9 58 490-547 189-246 (269)
435 PRK12798 chemotaxis protein; R 42.8 3.6E+02 0.0079 27.0 22.8 150 362-513 125-288 (421)
436 PHA02875 ankyrin repeat protei 42.8 3.7E+02 0.008 27.1 13.5 14 58-71 11-24 (413)
437 KOG4077 Cytochrome c oxidase, 42.3 1.2E+02 0.0027 24.4 6.3 37 476-512 78-114 (149)
438 KOG4567 GTPase-activating prot 41.8 3.2E+02 0.0069 26.1 9.9 42 235-276 264-305 (370)
439 KOG0292 Vesicle coat complex C 41.7 4.6E+02 0.01 29.1 12.1 131 357-510 651-781 (1202)
440 PF09670 Cas_Cas02710: CRISPR- 39.9 2E+02 0.0042 28.8 9.1 52 424-476 140-195 (379)
441 PF12862 Apc5: Anaphase-promot 39.6 94 0.002 23.5 5.4 22 490-511 49-70 (94)
442 PF12926 MOZART2: Mitotic-spin 39.5 1.6E+02 0.0034 21.9 7.3 41 436-476 29-69 (88)
443 KOG4279 Serine/threonine prote 39.4 3.8E+02 0.0083 29.1 10.9 49 458-516 352-400 (1226)
444 PF12796 Ank_2: Ankyrin repeat 39.4 92 0.002 22.9 5.4 52 55-112 3-54 (89)
445 PHA02875 ankyrin repeat protei 39.4 4E+02 0.0086 26.8 11.7 193 300-507 16-224 (413)
446 COG0735 Fur Fe2+/Zn2+ uptake r 38.3 1.2E+02 0.0026 25.3 6.2 33 81-113 24-56 (145)
447 PRK11639 zinc uptake transcrip 38.0 1.1E+02 0.0025 26.3 6.3 46 81-126 29-74 (169)
448 PF11768 DUF3312: Protein of u 38.0 1.4E+02 0.003 31.0 7.6 58 49-106 411-473 (545)
449 PF15015 NYD-SP12_N: Spermatog 38.0 78 0.0017 31.3 5.6 22 454-475 232-253 (569)
450 KOG0292 Vesicle coat complex C 37.7 51 0.0011 35.8 4.7 96 393-511 606-701 (1202)
451 PF07163 Pex26: Pex26 protein; 37.5 3.6E+02 0.0078 25.4 12.5 87 186-272 90-181 (309)
452 TIGR02270 conserved hypothetic 37.3 4.5E+02 0.0099 26.6 24.8 99 84-191 45-143 (410)
453 KOG0686 COP9 signalosome, subu 37.3 4.4E+02 0.0094 26.3 13.6 62 181-242 152-215 (466)
454 TIGR02710 CRISPR-associated pr 37.1 4.3E+02 0.0094 26.3 11.6 53 388-440 138-196 (380)
455 PF07575 Nucleopor_Nup85: Nup8 36.7 3.9E+02 0.0085 28.5 11.4 93 179-275 372-464 (566)
456 PF13934 ELYS: Nuclear pore co 36.5 3.3E+02 0.0072 24.8 12.7 53 386-441 114-166 (226)
457 KOG2297 Predicted translation 36.1 3.9E+02 0.0085 25.5 12.3 17 281-297 322-339 (412)
458 PRK11639 zinc uptake transcrip 35.7 1.7E+02 0.0037 25.1 7.0 48 183-230 29-76 (169)
459 PRK13800 putative oxidoreducta 34.5 7.5E+02 0.016 28.3 28.5 254 169-443 625-880 (897)
460 KOG3364 Membrane protein invol 34.2 2.7E+02 0.0058 23.0 8.8 71 412-482 29-104 (149)
461 KOG1811 Predicted Zn2+-binding 34.1 3.8E+02 0.0082 28.1 9.8 95 449-544 555-652 (1141)
462 PF14689 SPOB_a: Sensor_kinase 33.9 77 0.0017 21.8 3.7 24 385-408 28-51 (62)
463 PF12968 DUF3856: Domain of Un 33.8 2.5E+02 0.0054 22.5 8.8 61 450-510 55-128 (144)
464 PF14561 TPR_20: Tetratricopep 33.8 2E+02 0.0044 21.5 7.5 53 481-533 21-75 (90)
465 cd07153 Fur_like Ferric uptake 33.6 96 0.0021 24.5 4.9 47 82-128 5-51 (116)
466 PF11768 DUF3312: Protein of u 33.6 5.2E+02 0.011 27.0 10.8 56 253-308 412-473 (545)
467 PRK13342 recombination factor 33.4 5.3E+02 0.011 26.1 18.2 47 382-428 229-278 (413)
468 KOG2659 LisH motif-containing 33.2 3.7E+02 0.0081 24.4 9.0 91 383-475 29-128 (228)
469 KOG0376 Serine-threonine phosp 33.2 94 0.002 31.4 5.5 58 490-547 12-69 (476)
470 PF13934 ELYS: Nuclear pore co 33.1 3.8E+02 0.0082 24.4 11.0 20 421-440 114-133 (226)
471 cd07153 Fur_like Ferric uptake 33.0 1.3E+02 0.0028 23.7 5.6 48 184-231 5-52 (116)
472 TIGR02710 CRISPR-associated pr 32.8 5.1E+02 0.011 25.8 11.9 51 355-405 136-196 (380)
473 cd00280 TRFH Telomeric Repeat 32.4 2.5E+02 0.0054 24.5 7.1 29 458-486 119-147 (200)
474 COG5108 RPO41 Mitochondrial DN 32.3 2.2E+02 0.0048 30.2 7.9 113 354-476 33-159 (1117)
475 PF09454 Vps23_core: Vps23 cor 32.3 1.7E+02 0.0038 20.4 5.2 50 311-361 5-54 (65)
476 TIGR02328 conserved hypothetic 32.2 55 0.0012 25.5 2.9 26 577-602 49-74 (120)
477 PHA02537 M terminase endonucle 31.4 4.1E+02 0.0089 24.3 9.9 107 389-514 92-210 (230)
478 PF07575 Nucleopor_Nup85: Nup8 30.8 6.9E+02 0.015 26.7 19.5 32 42-74 145-176 (566)
479 KOG4567 GTPase-activating prot 30.8 4.9E+02 0.011 24.9 9.7 71 132-204 263-343 (370)
480 PF04090 RNA_pol_I_TF: RNA pol 30.6 3.9E+02 0.0084 23.8 10.1 35 381-416 42-76 (199)
481 PF01475 FUR: Ferric uptake re 30.6 1.1E+02 0.0025 24.3 4.9 47 183-229 11-57 (120)
482 PF07720 TPR_3: Tetratricopept 29.7 1.3E+02 0.0028 18.0 4.1 19 520-538 5-23 (36)
483 PF08424 NRDE-2: NRDE-2, neces 29.3 5.3E+02 0.012 25.0 13.4 115 396-512 47-184 (321)
484 KOG4279 Serine/threonine prote 28.8 1.2E+02 0.0027 32.4 5.6 98 381-481 202-319 (1226)
485 COG0790 FOG: TPR repeat, SEL1 28.7 5E+02 0.011 24.5 20.1 115 430-547 128-268 (292)
486 PRK12798 chemotaxis protein; R 28.4 6.2E+02 0.014 25.5 18.1 185 359-545 91-286 (421)
487 KOG1464 COP9 signalosome, subu 28.4 4.9E+02 0.011 24.3 16.9 137 353-495 149-317 (440)
488 PF04090 RNA_pol_I_TF: RNA pol 28.2 3.4E+02 0.0075 24.1 7.6 60 484-543 43-103 (199)
489 COG5159 RPN6 26S proteasome re 27.6 5.3E+02 0.012 24.4 20.1 33 185-217 9-41 (421)
490 cd08326 CARD_CASP9 Caspase act 27.0 76 0.0017 23.5 2.9 33 59-91 43-75 (84)
491 PF10516 SHNi-TPR: SHNi-TPR; 26.7 1.6E+02 0.0034 17.9 3.8 28 517-544 2-29 (38)
492 TIGR01503 MthylAspMut_E methyl 26.4 2E+02 0.0043 29.2 6.4 173 61-264 29-241 (480)
493 PRK09462 fur ferric uptake reg 26.3 3.3E+02 0.0071 22.7 7.1 64 401-464 3-66 (148)
494 PHA03100 ankyrin repeat protei 26.3 7.3E+02 0.016 25.5 16.2 14 159-173 117-130 (480)
495 KOG2471 TPR repeat-containing 26.3 7.3E+02 0.016 25.6 17.1 40 490-529 343-382 (696)
496 PF09454 Vps23_core: Vps23 cor 26.0 1.1E+02 0.0023 21.4 3.3 47 414-461 7-53 (65)
497 PF04190 DUF410: Protein of un 25.2 5.7E+02 0.012 23.9 18.4 142 187-343 18-170 (260)
498 PF01475 FUR: Ferric uptake re 25.0 1E+02 0.0022 24.5 3.7 46 81-126 11-56 (120)
499 PF11817 Foie-gras_1: Foie gra 25.0 2.6E+02 0.0056 25.9 6.8 17 425-441 188-204 (247)
500 PRK14700 recombination factor 25.0 6.2E+02 0.013 24.2 10.1 99 377-475 120-226 (300)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.1e-90 Score=753.84 Aligned_cols=561 Identities=37% Similarity=0.686 Sum_probs=552.8
Q ss_pred CCCCChhHHhHHHHHHHccCChhHHHHhhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHH
Q 007288 41 IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLK 120 (609)
Q Consensus 41 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 120 (609)
+..||+.++|+||.+|+++|++++|.++|++|++||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.
T Consensus 217 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~ 296 (857)
T PLN03077 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296 (857)
T ss_pred CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHH
Q 007288 121 ACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLG 200 (609)
Q Consensus 121 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 200 (609)
+|++.|+++.+.+++..|.+.|+.||..+||+|+.+|++.| ++++|.++|++|..+|..+||++|.+|++.|++++|++
T Consensus 297 a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g-~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~ 375 (857)
T PLN03077 297 ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG-SWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALE 375 (857)
T ss_pred HHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcC-CHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh
Q 007288 201 VFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280 (609)
Q Consensus 201 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 280 (609)
+|++|...|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..++++|+++|++.|++++|.++|++|.++|.
T Consensus 376 lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~ 455 (857)
T PLN03077 376 TYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV 455 (857)
T ss_pred HHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 007288 281 ITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMY 359 (609)
Q Consensus 281 ~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 359 (609)
++|+.+|.+|++.| .++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++|+++|
T Consensus 456 vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y 534 (857)
T PLN03077 456 ISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534 (857)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHH
Confidence 99999999999999 9999999999986 599999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007288 360 AKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439 (609)
Q Consensus 360 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 439 (609)
+++|++++|.++|+.+ .+|..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+
T Consensus 535 ~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~ 613 (857)
T PLN03077 535 VRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH 613 (857)
T ss_pred HHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHH
Confidence 9999999999999999 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhh-hcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcch
Q 007288 440 SMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518 (609)
Q Consensus 440 ~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 518 (609)
.|. +.|+.|+..+|++++++|++.|++++|.+++++|+++||..+|++|+.+|..+++.+.++...+++++++|++...
T Consensus 614 ~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~ 693 (857)
T PLN03077 614 SMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGY 693 (857)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Confidence 996 8899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCcccCceeEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHcCcccCc
Q 007288 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDI 598 (609)
Q Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~ 598 (609)
|..|+++|++.|+|++|.++.+.|+++|++++|+++|+++++++|.|+++|.+||+..++|+.+.++..+|++.||+||+
T Consensus 694 y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~ 773 (857)
T PLN03077 694 YILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSE 773 (857)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q 007288 599 DCLIHD 604 (609)
Q Consensus 599 ~~~~~~ 604 (609)
..++++
T Consensus 774 ~~~~~~ 779 (857)
T PLN03077 774 SSSMDE 779 (857)
T ss_pred chhccc
Confidence 998854
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4e-84 Score=692.73 Aligned_cols=535 Identities=31% Similarity=0.614 Sum_probs=525.3
Q ss_pred CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCC-CCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhH
Q 007288 74 ERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE-VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENS 152 (609)
Q Consensus 74 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 152 (609)
.++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3567799999999999999999999999999864 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchh
Q 007288 153 LMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSF 232 (609)
Q Consensus 153 ll~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 232 (609)
++.+|++.| +++.|.++|++|++||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.
T Consensus 164 Li~~y~k~g-~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 164 VLLMHVKCG-MLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHhcCC-CHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCC
Q 007288 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFS 311 (609)
Q Consensus 233 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~ 311 (609)
+.+++..+.+.|+.+|..+|++|+++|+++|++++|.++|+.|.++|.++||.++.+|++.| .++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 007288 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG 391 (609)
Q Consensus 312 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 391 (609)
||..||+.++.+|++.|+++.|.+++..|.+.|+.||..++++|+++|+++|++++|.++|++|.++|+.+||+||.+|+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhh-hcCCCCChhHHHHHHHHHhhcCCHHHHH
Q 007288 392 AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAY 470 (609)
Q Consensus 392 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 470 (609)
+.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|+.++++|++.|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 999999999999999999999999999999999999999999999999995 5799999999999999999999999999
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCccc
Q 007288 471 ELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKE 550 (609)
Q Consensus 471 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 550 (609)
+++++|+..|+..+|++|+.+|..+|+++.|..+++++.++.|++..+|..|+++|++.|+|++|.++++.|+++|+++.
T Consensus 483 ~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHcCcccCcccccccCCCCC
Q 007288 551 VGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGET 609 (609)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~ 609 (609)
|+++|+++++.+|.|+++|.+||+..++++.+.++..+|++.||+||+.+++|||+++|
T Consensus 563 ~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~ 621 (697)
T PLN03081 563 PACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDE 621 (697)
T ss_pred CCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999754
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.4e-76 Score=644.01 Aligned_cols=541 Identities=27% Similarity=0.494 Sum_probs=511.3
Q ss_pred CCCChhHHhHHHHHHHccCChhHHHHhhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 007288 42 PKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121 (609)
Q Consensus 42 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 121 (609)
+.+++.++|+|+++|++.|+++.|.++|++|++||+.+||.+|.+|++.|++++|+++|++|...|+.||..||+.++.+
T Consensus 117 ~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~ 196 (857)
T PLN03077 117 PSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT 196 (857)
T ss_pred CCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHH
Q 007288 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGV 201 (609)
Q Consensus 122 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 201 (609)
|+..+++..+.+++..|.+.|+.|+..++++|+.+|++.| +++.|.++|++|+.+|..+||++|.+|++.|++++|+++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g-~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~l 275 (857)
T PLN03077 197 CGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG-DVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLEL 275 (857)
T ss_pred hCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCC-CHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh
Q 007288 202 FKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281 (609)
Q Consensus 202 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 281 (609)
|++|...|+.||..||+.++.+|++.|+++.+.+++..|.+.|+.||..+|++++.+|++.|++++|.++|++|.++|.+
T Consensus 276 f~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~ 355 (857)
T PLN03077 276 FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV 355 (857)
T ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 007288 282 TWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360 (609)
Q Consensus 282 ~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 360 (609)
+||.++.+|++.| .++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..++++|+++|+
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~ 435 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 007288 361 KCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS 440 (609)
Q Consensus 361 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 440 (609)
++|++++|.++|++|.++|+.+|+.+|.+|++.|+.++|+++|++|.. ++.||..||+.++.+|++.|+++.+.+++..
T Consensus 436 k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 436 KCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred HcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 999999999999999999999999999999999999999999999986 5999999999999999999999999999999
Q ss_pred hhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhc--cCCCCcch
Q 007288 441 MNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD--LKPNMMGT 518 (609)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~ 518 (609)
+.+.|+.+|..++++|+++|+++|++++|.++|+++ .||..+|++++.+|.++|+.++|.++|++|.+ ..| |..+
T Consensus 515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T 591 (857)
T PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVT 591 (857)
T ss_pred HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-Cccc
Confidence 999999999999999999999999999999999998 79999999999999999999999999999987 456 7899
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH-hCCCcccCceeEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHcCcccC
Q 007288 519 YIILSNIYAAEGKWEEFAKFRKIMR-GMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPD 597 (609)
Q Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd 597 (609)
|..++.+|.+.|++++|.++|+.|. +.|+.|+...... ++......+...+++ +++++| +++||
T Consensus 592 ~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~--------lv~~l~r~G~~~eA~----~~~~~m---~~~pd 656 (857)
T PLN03077 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC--------VVDLLGRAGKLTEAY----NFINKM---PITPD 656 (857)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHH--------HHHHHHhCCCHHHHH----HHHHHC---CCCCC
Confidence 9999999999999999999999999 6788776533111 223333444555543 555555 57888
Q ss_pred ccccc
Q 007288 598 IDCLI 602 (609)
Q Consensus 598 ~~~~~ 602 (609)
...|-
T Consensus 657 ~~~~~ 661 (857)
T PLN03077 657 PAVWG 661 (857)
T ss_pred HHHHH
Confidence 77653
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.2e-68 Score=572.91 Aligned_cols=551 Identities=14% Similarity=0.202 Sum_probs=491.9
Q ss_pred CCCChhHHhHHHHHHHccCChhHHHHhhccCCCCCcc-----cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHH
Q 007288 42 PKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVV-----SWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLS 116 (609)
Q Consensus 42 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~ 116 (609)
..++...|..++..|++.|++++|+++|++|.+++.. .++.++.+|.+.|..++|+.+|+.|.. ||..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 4567888999999999999999999999999876554 456777889999999999999999974 8999999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCC----CCChhhHHHHHHHHHhc
Q 007288 117 SVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMK----WKNDVSWTTLITGYAHS 192 (609)
Q Consensus 117 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~ 192 (609)
.+|.+|++.|+++.|.++++.|.+.|+.||..+|+.||.+|++.| +++.|.++|++|. .||..+|+.+|.+|++.
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G-~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG-KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999 9999999999997 47999999999999999
Q ss_pred CChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHH--hCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 007288 193 GNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIK--HGFGSNLPVMNSILDMYCRFDCLSDANQ 270 (609)
Q Consensus 193 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~--~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 270 (609)
|++++|+++|++|...|+.||..||+.++.+|++.|++++|.++|++|.+ .|+.||..+|++++.+|++.|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 6789999999999999999999999999
Q ss_pred HHHhcCC----CChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Q 007288 271 YFDEMTE----KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345 (609)
Q Consensus 271 ~~~~~~~----~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 345 (609)
+|+.|.+ ++..+|+.+|.+|++.| .++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999975 56799999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007288 346 DGNLALANALIDMYAKCGNISDSQKIFSEMS----DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAV 421 (609)
Q Consensus 346 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 421 (609)
.|+..+|++|+.+|++.|++++|.++|++|. .||..+||.||.+|++.|++++|.++|++|.+.|+.||..||+.+
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9999999999999999999999999999995 689999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHh----hcC-------------------CHHHHHHHHHhC--
Q 007288 422 LTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG----RAG-------------------RVKEAYELIKSM-- 476 (609)
Q Consensus 422 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g-------------------~~~~A~~~~~~~-- 476 (609)
+.+|++.|++++|.+++++|.+.|+.||..+|++++..|. +++ ..++|+.+|++|
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987643 222 246799999999
Q ss_pred -CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhc-cCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCcccCcee
Q 007288 477 -PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD-LKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMS 554 (609)
Q Consensus 477 -~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 554 (609)
++.||..||+.++.++...+..+.+..+++.+.. -.+++..+|+.+++++.+. .++|..++++|.+.|+.|+....
T Consensus 841 ~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~~~ 918 (1060)
T PLN03218 841 AGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVSFK 918 (1060)
T ss_pred CCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcccc
Confidence 8999999999999888888999999888887643 3445788999999998432 36899999999999998776421
Q ss_pred EEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHcC-cccCccccccc
Q 007288 555 WIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETA-YEPDIDCLIHD 604 (609)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g-~~pd~~~~~~~ 604 (609)
.....-.++.| +-+.+..+.-.|..-+.+..++| --|.....++.
T Consensus 919 ~~~~~~d~~~~-----~~~aa~~~l~~wl~~~~~~~~~g~~lp~~~~~~~~ 964 (1060)
T PLN03218 919 KSPIVIDAEEL-----PVFAAEVYLLTILKGLKHRLAAGAKLPNVTILLPT 964 (1060)
T ss_pred cCceEEEcccC-----cchhHHHHHHHHHHHHHHHHhccCcCCcceeeecc
Confidence 11111122222 33355666666666666666777 44555554554
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.4e-64 Score=538.00 Aligned_cols=483 Identities=14% Similarity=0.211 Sum_probs=450.8
Q ss_pred HHhhHHHhhhhcccCCCCCCCCCChhHHhHHHHHHHccCChhHHHHhhccCCCCCcccHHHHHHHHHcCCChhHHHHHHH
Q 007288 22 IKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFV 101 (609)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 101 (609)
+..++..|..+.... ...++..+++.++..|.+.|.+++|.++|+.|..||..+||.+|.+|++.|+++.|.++|+
T Consensus 386 l~eAl~Lfd~M~~~g----vv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~ 461 (1060)
T PLN03218 386 IKDCIDLLEDMEKRG----LLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLR 461 (1060)
T ss_pred HHHHHHHHHHHHhCC----CCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 445555555554332 2346788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCC----CC
Q 007288 102 EMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMK----WK 177 (609)
Q Consensus 102 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~----~~ 177 (609)
.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.| ++++|.++|+.|. .|
T Consensus 462 ~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G-~~eeAl~lf~~M~~~Gv~P 540 (1060)
T PLN03218 462 LVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG-QVAKAFGAYGIMRSKNVKP 540 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc-CHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999999995 47
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHH--CCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHH
Q 007288 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLL--EGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSI 255 (609)
Q Consensus 178 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 255 (609)
|..+||.||.+|++.|++++|.++|++|.. .|+.||..||+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.+
T Consensus 541 D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsL 620 (1060)
T PLN03218 541 DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA 620 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHH
Confidence 999999999999999999999999999986 689999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccH
Q 007288 256 LDMYCRFDCLSDANQYFDEMTE----KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAAL 330 (609)
Q Consensus 256 ~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 330 (609)
|.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.| .++|.++|++|.+.|+.||..+|+.+|.+|++.|++
T Consensus 621 I~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~ 700 (1060)
T PLN03218 621 VNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNW 700 (1060)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Confidence 9999999999999999999974 79999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 007288 331 SCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS----DRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406 (609)
Q Consensus 331 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 406 (609)
++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.+++.+|
T Consensus 701 eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M 780 (1060)
T PLN03218 701 KKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQA 780 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999997 489999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhc----c-------------------CCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc
Q 007288 407 VKSGVRPDRIVFMAVLTACSH----A-------------------GLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463 (609)
Q Consensus 407 ~~~g~~p~~~~~~~ll~~~~~----~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 463 (609)
.+.|+.||..+|+.++..|.+ . +..++|..+|++|.+.|+.||..+|+.++.++++.
T Consensus 781 ~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~ 860 (1060)
T PLN03218 781 KEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLP 860 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc
Confidence 999999999999999876542 1 12467999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhC---CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhcc
Q 007288 464 GRVKEAYELIKSM---PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDL 511 (609)
Q Consensus 464 g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 511 (609)
+..+.+..+++.| +..|+..+|++|+.++.+. .++|..+++++.+.
T Consensus 861 ~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~ 909 (1060)
T PLN03218 861 HDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASL 909 (1060)
T ss_pred ccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHc
Confidence 9999999999998 4566789999999998432 46899999999774
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.3e-60 Score=509.49 Aligned_cols=405 Identities=24% Similarity=0.481 Sum_probs=394.0
Q ss_pred CCCCChhHHhHHHHHHHccCChhHHHHhhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHH
Q 007288 41 IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLK 120 (609)
Q Consensus 41 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 120 (609)
+..||+.+||.|+++|++.|++++|.++|++|++||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.
T Consensus 153 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~ 232 (697)
T PLN03081 153 GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLR 232 (697)
T ss_pred CCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHH
Q 007288 121 ACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLG 200 (609)
Q Consensus 121 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 200 (609)
+|+..|..+.+.+++..+.+.|+.||..++++|+++|+++| ++++|.++|++|.++|+.+||++|.+|++.|++++|++
T Consensus 233 a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g-~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~ 311 (697)
T PLN03081 233 ASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG-DIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALC 311 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC-CHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh
Q 007288 201 VFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280 (609)
Q Consensus 201 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 280 (609)
+|++|...|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|+++|++++|.++|++|.++|.
T Consensus 312 lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~ 391 (697)
T PLN03081 312 LYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL 391 (697)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHH-hCCCCchhHHHHHHHH
Q 007288 281 ITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR-RGLDGNLALANALIDM 358 (609)
Q Consensus 281 ~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~ 358 (609)
.+||.||.+|++.| .++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 99999999999999 999999999999999999999999999999999999999999999986 6999999999999999
Q ss_pred HHhcCCHHHHHHHHHhcC-CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHH
Q 007288 359 YAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD-RIVFMAVLTACSHAGLVDEGLK 436 (609)
Q Consensus 359 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~ 436 (609)
|++.|++++|.++++++. +|+..+|++|+.+|...|+++.|..+++++.+ +.|+ ..+|..|+..|++.|++++|.+
T Consensus 472 l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 472 LGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAK 549 (697)
T ss_pred HHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHH
Confidence 999999999999999997 68999999999999999999999999999975 5564 5699999999999999999999
Q ss_pred HHHHhhhcCCCC
Q 007288 437 YFKSMNDYNVNP 448 (609)
Q Consensus 437 ~~~~~~~~~~~~ 448 (609)
+++.|.+.|+..
T Consensus 550 v~~~m~~~g~~k 561 (697)
T PLN03081 550 VVETLKRKGLSM 561 (697)
T ss_pred HHHHHHHcCCcc
Confidence 999999888753
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.1e-29 Score=285.68 Aligned_cols=494 Identities=12% Similarity=0.061 Sum_probs=379.2
Q ss_pred CChhHHhHHHHHHHccCChhHHHHhhccCCC--C-CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHH
Q 007288 44 GPSILATNLIKSYFDEGLIEEARTLFDEMPE--R-DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLK 120 (609)
Q Consensus 44 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 120 (609)
.+..++..+...|.+.|++++|.+.|+++.+ | +...|..+...+...|++++|.+.|+.+.+.... +......++.
T Consensus 361 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 439 (899)
T TIGR02917 361 DDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLIL 439 (899)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHH
Confidence 3567888999999999999999999998764 3 4556778888888999999999999988875432 2344556677
Q ss_pred HhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCChhh
Q 007288 121 ACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW---KNDVSWTTLITGYAHSGNGYG 197 (609)
Q Consensus 121 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 197 (609)
.+.+.|++++|..+++.+.+.. +.+..++..+...+...| ++++|...|+++.+ .+...+..+...+...|++++
T Consensus 440 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 440 SYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKG-DLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHH
Confidence 7888888888888888887654 346678888888888888 88888888887643 355667778888888888888
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 007288 198 GLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE 277 (609)
Q Consensus 198 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 277 (609)
|.+.|+++...+ +.+..++..+...+...|+.++|...++.+.+.+ +.+...+..++..|.+.|++++|..+++.+.+
T Consensus 518 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 518 AIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888887754 3356677778888888888888888888887764 55666777888888888888888888887753
Q ss_pred ---CChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHH
Q 007288 278 ---KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353 (609)
Q Consensus 278 ---~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 353 (609)
.+...|..+...+...| +++|...|+++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+...+.
T Consensus 596 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 673 (899)
T TIGR02917 596 AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQI 673 (899)
T ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 35667888888888888 888888888887643 2345567777778888888888888888877654 44567777
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 007288 354 ALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430 (609)
Q Consensus 354 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 430 (609)
.++..+...|++++|..+++.+.+ .+...+..+...+...|++++|.+.|+++... .|+..++..+..++.+.|+
T Consensus 674 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 751 (899)
T TIGR02917 674 GLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGN 751 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCC
Confidence 888888888888888888888764 34556777777788888888888888888774 3555667777788888888
Q ss_pred HHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHhhHHHHHHHHHhCCChHHHHHHHHHH
Q 007288 431 VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PF-KPDESVWGPLLGACKEHRLPNLGKLAALRV 508 (609)
Q Consensus 431 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 508 (609)
+++|.+.++.+.+.. +.+...+..+...|...|++++|.+.|+++ .. .++...+..+...+...|+ .+|+..++++
T Consensus 752 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~ 829 (899)
T TIGR02917 752 TAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKA 829 (899)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 888888888876543 346777777888888888888888888777 22 3356677777777888887 7788888888
Q ss_pred hccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 007288 509 LDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSK 548 (609)
Q Consensus 509 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 548 (609)
++..|+++..+..++.+|...|++++|.++++++.+.++.
T Consensus 830 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 830 LKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 8888877778888888888888888888888888776653
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.7e-29 Score=284.13 Aligned_cols=491 Identities=12% Similarity=0.024 Sum_probs=412.6
Q ss_pred ChhHHhHHHHHHHccCChhHHHHhhccCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 007288 45 PSILATNLIKSYFDEGLIEEARTLFDEMPE---RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121 (609)
Q Consensus 45 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 121 (609)
+...+..+...+.+.|++++|...++.+.. .+...++.+...+.+.|++++|.++|+++.+... .+...+..+...
T Consensus 328 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 406 (899)
T TIGR02917 328 SHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGIS 406 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 456777888999999999999999988764 3456788888999999999999999999987532 245567777788
Q ss_pred hhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCChhhH
Q 007288 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW---KNDVSWTTLITGYAHSGNGYGG 198 (609)
Q Consensus 122 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a 198 (609)
+...|++++|...++.+.+.... .......++..+.+.| ++++|..+++.+.. .+...|+.+...+...|++++|
T Consensus 407 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 484 (899)
T TIGR02917 407 KLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSG-QFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKA 484 (899)
T ss_pred HHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHH
Confidence 88999999999999999887644 3445666788888998 99999999988764 3667899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-
Q 007288 199 LGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE- 277 (609)
Q Consensus 199 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 277 (609)
.+.|+++.... +.+...+..+...+...|++++|.+.++.+.+.+ +.+..++..+...+.+.|+.++|...|+++.+
T Consensus 485 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 562 (899)
T TIGR02917 485 REAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL 562 (899)
T ss_pred HHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999998753 3355667778888899999999999999998875 56788889999999999999999999998854
Q ss_pred --CChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHH
Q 007288 278 --KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354 (609)
Q Consensus 278 --~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 354 (609)
.+...+..+...+...| .++|..+++++.... +.+...|..+...+...|+++.|...++.+.+.. +.+...+..
T Consensus 563 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 640 (899)
T TIGR02917 563 NPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLL 640 (899)
T ss_pred CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 35567788889999999 999999999988643 4567788899999999999999999999988765 446677888
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 007288 355 LIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLV 431 (609)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 431 (609)
+..++.+.|++++|...|+.+.+ .+..++..++..+...|++++|..+++.+.+.+ .++...+..+...+...|++
T Consensus 641 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~ 719 (899)
T TIGR02917 641 LADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDY 719 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCH
Confidence 99999999999999999998864 356788889999999999999999999998864 45667888888899999999
Q ss_pred HHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHhhHHHHHHHHHhCCChHHHHHHHHHHh
Q 007288 432 DEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-P-FKPDESVWGPLLGACKEHRLPNLGKLAALRVL 509 (609)
Q Consensus 432 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 509 (609)
++|...|+.+...+ |+..++..+...+.+.|++++|.+.++++ . ...+...+..+...|...|++++|...+++++
T Consensus 720 ~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 797 (899)
T TIGR02917 720 PAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVV 797 (899)
T ss_pred HHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 99999999997654 45577778899999999999999999887 2 33456778888888999999999999999999
Q ss_pred ccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 510 DLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 510 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
+..|+++..+..++.++...|+ .+|+.++++..+..
T Consensus 798 ~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 798 KKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 9999999999999999999999 88999999988753
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=7.2e-22 Score=222.84 Aligned_cols=491 Identities=9% Similarity=0.038 Sum_probs=308.2
Q ss_pred ChhHHhHHHHHHHccCChhHHHHhhccCCC--CCcccH-----------------HHHHHHHHcCCChhHHHHHHHHHHH
Q 007288 45 PSILATNLIKSYFDEGLIEEARTLFDEMPE--RDVVSW-----------------TVMIAGYTSFNCHNQAWTVFVEMVR 105 (609)
Q Consensus 45 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~-----------------~~li~~~~~~~~~~~a~~~~~~m~~ 105 (609)
|+.++..++..+.+.|+.++|.+.++++.+ |+...+ ....+.+...|++++|...|+.+.+
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~ 140 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFN 140 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHcc
Confidence 566778888999999999999999998874 433222 2233467788999999999999887
Q ss_pred CCCCCCcc-hHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCCCh-----
Q 007288 106 NEVNPNAF-TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND----- 179 (609)
Q Consensus 106 ~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~~----- 179 (609)
.+ +|+.. ............|+.++|...++.+.+..+. +...+..+...+...| +.++|+..|+++.....
T Consensus 141 ~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g-~~~eAl~~l~~~~~~~~~~~~a 217 (1157)
T PRK11447 141 GA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSG-RRDEGFAVLEQMAKSPAGRDAA 217 (1157)
T ss_pred CC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccC-CHHHHHHHHHHHhhCCCchHHH
Confidence 53 22322 1111222233568899999999999887644 5667778888888888 99999888877532100
Q ss_pred ------------------hhHH----------------------------------HHHHHHHhcCChhhHHHHHHHHHH
Q 007288 180 ------------------VSWT----------------------------------TLITGYAHSGNGYGGLGVFKEMLL 207 (609)
Q Consensus 180 ------------------~~~~----------------------------------~li~~~~~~g~~~~a~~~~~~m~~ 207 (609)
..+. .....+...|++++|+..|++...
T Consensus 218 a~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~ 297 (1157)
T PRK11447 218 AQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVR 297 (1157)
T ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0000 112345567888888888888877
Q ss_pred CCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCC-ChhHH------------HHHHHHHHhcCCHHHHHHHHHh
Q 007288 208 EGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGS-NLPVM------------NSILDMYCRFDCLSDANQYFDE 274 (609)
Q Consensus 208 ~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~------------~~l~~~~~~~g~~~~A~~~~~~ 274 (609)
.. +.+...+..+...+.+.|++++|...|++..+..... ....+ ......+.+.|++++|...|++
T Consensus 298 ~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 376 (1157)
T PRK11447 298 AN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQ 376 (1157)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 53 2266777778888888888888888888887754221 11111 1224456778888888888887
Q ss_pred cCC---CChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCC-HHhHHHHHHHH-------------------------
Q 007288 275 MTE---KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPN-CFTFTSIIAAC------------------------- 324 (609)
Q Consensus 275 ~~~---~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~------------------------- 324 (609)
..+ .+...+..+...+...| .++|++.|++..+.. |+ ...+..+...+
T Consensus 377 Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~ 454 (1157)
T PRK11447 377 ARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDD 454 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHH
Confidence 754 24556667777888888 888888888877642 32 33333333322
Q ss_pred -----------------HhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcchHH
Q 007288 325 -----------------ATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--R-DLVTWT 384 (609)
Q Consensus 325 -----------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~ 384 (609)
...|++++|...+++..+.. +.+...+..+..+|.+.|++++|...++.+.+ | +...+.
T Consensus 455 ~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~ 533 (1157)
T PRK11447 455 IERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVY 533 (1157)
T ss_pred HHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 23344444444444444432 12233344444444445555555544444431 1 222222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHH
Q 007288 385 SMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI---------VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455 (609)
Q Consensus 385 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 455 (609)
.+...+...++.++|+..++.+......++.. .+..+...+...|+.++|..+++. .+.+...+..
T Consensus 534 a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~ 608 (1157)
T PRK11447 534 AYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLT 608 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHH
Confidence 22233334444444444444332211111110 111233445556666666666551 2345556667
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChH
Q 007288 456 VVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWE 533 (609)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 533 (609)
+...+.+.|++++|++.|++. ...| +...+..+...+...|++++|+..++++.+..|++...+..++.++...|+++
T Consensus 609 La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~ 688 (1157)
T PRK11447 609 LADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTA 688 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHH
Confidence 788888888888888888877 3445 45677778888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhCCC
Q 007288 534 EFAKFRKIMRGMGS 547 (609)
Q Consensus 534 ~A~~~~~~m~~~~~ 547 (609)
+|.++++++.....
T Consensus 689 eA~~~~~~al~~~~ 702 (1157)
T PRK11447 689 AAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHHHHHhhhCc
Confidence 88888888876543
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=3.4e-21 Score=217.37 Aligned_cols=485 Identities=11% Similarity=0.057 Sum_probs=334.9
Q ss_pred HhHHHHHHHccCChhHHHHhhccCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchH----------
Q 007288 49 ATNLIKSYFDEGLIEEARTLFDEMPE---RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTL---------- 115 (609)
Q Consensus 49 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~---------- 115 (609)
.-..++.+...++.+.|.+.++++.. .|+..+..++..+.+.|+.++|...+++..+. .|+...+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~--~P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL--APDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHhc
Confidence 44566788889999999999998763 35677888999999999999999999999985 3444333
Q ss_pred -------HHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHH-HHhcCCCHHHHHHHHccCCCC---ChhhHHH
Q 007288 116 -------SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDV-YATCCISMDNARLVFNDMKWK---NDVSWTT 184 (609)
Q Consensus 116 -------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~~~~A~~~~~~~~~~---~~~~~~~ 184 (609)
..+...+...|++++|.+.++.+.+.+.+ +...-...... ....| +.++|++.|+++... +...+..
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~-~~~la~~y~~~~~~~~g-~~~~A~~~L~~ll~~~P~~~~~~~~ 186 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGAPP-ELDLAVEYWRLVAKLPA-QRPEAINQLQRLNADYPGNTGLRNT 186 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCC-ChHHHHHHHHHHhhCCc-cHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 22334578899999999999999876543 22211112222 22346 999999999988753 5667888
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCC------------------C--------------CCHhhH----H----------
Q 007288 185 LITGYAHSGNGYGGLGVFKEMLLEGV------------------E--------------MNPYSF----S---------- 218 (609)
Q Consensus 185 li~~~~~~g~~~~a~~~~~~m~~~g~------------------~--------------p~~~t~----~---------- 218 (609)
+...+...|+.++|++.++++..... . |+...+ .
T Consensus 187 LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~ 266 (1157)
T PRK11447 187 LALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA 266 (1157)
T ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence 99999999999999999998754321 0 111000 0
Q ss_pred -------HHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC---hhHHHHH
Q 007288 219 -------IAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE--KD---LITWNTI 286 (609)
Q Consensus 219 -------~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~---~~~~~~l 286 (609)
.....+...|++++|...+++.++.. +.+..++..+..+|.+.|++++|+..|++..+ |+ ...|..+
T Consensus 267 dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 267 DPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred CcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence 11233556789999999999988864 55778888899999999999999999988754 21 1122222
Q ss_pred ------------HHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHH
Q 007288 287 ------------IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353 (609)
Q Consensus 287 ------------i~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 353 (609)
...+.+.| .++|...|++..... +.+...+..+...+...|++++|.+.|+++.+.. +.+...+.
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~ 423 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVR 423 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 33566778 899999999988753 2345566777888889999999999999988764 23344445
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCC------------cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 007288 354 ALIDMYAKCGNISDSQKIFSEMSDRD------------LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD-RIVFMA 420 (609)
Q Consensus 354 ~l~~~~~~~g~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ 420 (609)
.+...|. .++.++|..+++.+.... ...+..+...+...|++++|++.|++..+. .|+ ...+..
T Consensus 424 ~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~ 500 (1157)
T PRK11447 424 GLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYR 500 (1157)
T ss_pred HHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 5555543 334555555555443210 112333444555566666666666666553 332 334455
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhcCCCCChhHH--------------------------------------------HHH
Q 007288 421 VLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIY--------------------------------------------GCV 456 (609)
Q Consensus 421 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------------------------------------------~~l 456 (609)
+...|.+.|++++|...++++.+... .+...+ ..+
T Consensus 501 LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~ 579 (1157)
T PRK11447 501 LAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLET 579 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHH
Confidence 55566666666666666666543221 112111 123
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHH
Q 007288 457 VDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFA 536 (609)
Q Consensus 457 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 536 (609)
...+...|+.++|+++++.-+ ++...+..+...+.+.|++++|+..++++++..|+++..+..++.+|...|++++|.
T Consensus 580 a~~l~~~G~~~eA~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 580 ANRLRDSGKEAEAEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 445666777777777777432 244556677788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCC
Q 007288 537 KFRKIMRGMG 546 (609)
Q Consensus 537 ~~~~~m~~~~ 546 (609)
+.+++..+..
T Consensus 658 ~~l~~ll~~~ 667 (1157)
T PRK11447 658 AQLAKLPATA 667 (1157)
T ss_pred HHHHHHhccC
Confidence 9999887643
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=3.1e-20 Score=177.96 Aligned_cols=447 Identities=13% Similarity=0.096 Sum_probs=327.9
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCC
Q 007288 83 MIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162 (609)
Q Consensus 83 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 162 (609)
+..-..+.|++++|.+.-...-+.+ ..+..+.-.+-..+....+++...+.-....+... .-..+|+.+...+-..|
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~-q~ae~ysn~aN~~kerg- 130 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNP-QGAEAYSNLANILKERG- 130 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccc-hHHHHHHHHHHHHHHhc-
Confidence 3334455666666666544333221 11222222222334444444444333333332221 13456666666666666
Q ss_pred CHHHHHHHHccCCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHH-HHHHHHHccCCchhHHHHHH
Q 007288 163 SMDNARLVFNDMKW---KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFS-IAVRACASTGWVSFGKLIHA 238 (609)
Q Consensus 163 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~g~~~~a~~~~~ 238 (609)
++++|+..++.+.+ ..+..|-.+..++...|+.+.|.+.|.+..+. .|+..... .+...+...|++++|..-|.
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 77777777766543 25667888888888888888888888887764 55555433 33344455788888888888
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCC-
Q 007288 239 AVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD---LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPN- 313 (609)
Q Consensus 239 ~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~- 313 (609)
+.++.. +-=..+|+.|...+-..|+...|+..|++...-| ...|-.|...|...+ +++|+..|.+.... .|+
T Consensus 209 kAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~ 285 (966)
T KOG4626|consen 209 KAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNH 285 (966)
T ss_pred HHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcc
Confidence 877763 3335678888888888899999988888876533 356777888888888 88888888877653 454
Q ss_pred HHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcchHHHHHHHH
Q 007288 314 CFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--R-DLVTWTSMMIGY 390 (609)
Q Consensus 314 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~ 390 (609)
...+..+...|-..|.++.|+..+++..+.. +.-...|+.|.+++-..|++.+|.+.|..... | ...+.+.|...|
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIY 364 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 4566667777788899999999999888764 33467889999999999999999999998874 3 446788899999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHH
Q 007288 391 GAHGHGKEAIELFDEMVKSGVRPDR-IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN-KEIYGCVVDLLGRAGRVKE 468 (609)
Q Consensus 391 ~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 468 (609)
...|.+++|..+|....+ +.|.- ..++.|...|-+.|++++|+..+++..+ +.|+ ...|+.+...|-..|+.+.
T Consensus 365 ~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHH
Confidence 999999999999999887 56665 4889999999999999999999999876 5566 5688999999999999999
Q ss_pred HHHHHHhC-CCCCC-HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 007288 469 AYELIKSM-PFKPD-ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIM 542 (609)
Q Consensus 469 A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 542 (609)
|++.+.+. .+.|. ....+.|...|...|+..+|+..|+.+++++|+.+.+|..++.++.--.+|.+=-+.++++
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl 516 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKL 516 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHH
Confidence 99999887 67775 4577888999999999999999999999999999999999999988777776643333333
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=2.1e-18 Score=186.21 Aligned_cols=486 Identities=9% Similarity=-0.006 Sum_probs=332.0
Q ss_pred CCCCCCChhHHhHHHHHHH--ccCChhHHHHhhccCCC--C-CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcc
Q 007288 39 PLIPKGPSILATNLIKSYF--DEGLIEEARTLFDEMPE--R-DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAF 113 (609)
Q Consensus 39 ~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 113 (609)
|..+-..-.++-.+..++. ..|++++|+..|+...+ | +..++..+...|.+.|++++|+..+++..+. .|+..
T Consensus 35 ~~~~~~~~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~ 112 (987)
T PRK09782 35 GLSDYRHFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDA 112 (987)
T ss_pred CCchHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccH
Confidence 4444344444444555444 34999999999998874 3 4567888999999999999999999999985 55555
Q ss_pred hHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHH--------HHhcCCCHHHHHHHHccCCCC--ChhhHH
Q 007288 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDV--------YATCCISMDNARLVFNDMKWK--NDVSWT 183 (609)
Q Consensus 114 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~g~~~~~A~~~~~~~~~~--~~~~~~ 183 (609)
.|..++..+ +++++|..+++++.+..+. +..++..+... |.+.+ ...++++ .+...+ +.....
T Consensus 113 ~~~~~La~i---~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~e-qAl~AL~--lr~~~~~~~~~vL~ 185 (987)
T PRK09782 113 RLERSLAAI---PVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLP-VARAQLN--DATFAASPEGKTLR 185 (987)
T ss_pred HHHHHHHHh---ccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHH-HHHHHHH--HhhhCCCCCcHHHH
Confidence 555555333 8889999999999998654 34455444444 66655 6666665 222233 333344
Q ss_pred H-HHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHc-cCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 007288 184 T-LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS-TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR 261 (609)
Q Consensus 184 ~-li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 261 (609)
. +...|.+.|++++|++++.++.+.+.. +..-...+..++.. .++ +.+..+++. .+..+..+...+...|.+
T Consensus 186 L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~ 259 (987)
T PRK09782 186 TDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAY 259 (987)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHH
Confidence 4 489999999999999999999998644 34445556666666 466 777777543 334678888999999999
Q ss_pred cCCHHHHHHHHHhcCC-----CChhHHH------------------------------HHHHHH----------------
Q 007288 262 FDCLSDANQYFDEMTE-----KDLITWN------------------------------TIIAGY---------------- 290 (609)
Q Consensus 262 ~g~~~~A~~~~~~~~~-----~~~~~~~------------------------------~li~~~---------------- 290 (609)
.|+.++|.++++++.. ++..+|- .++..+
T Consensus 260 ~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (987)
T PRK09782 260 RGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATL 339 (987)
T ss_pred CCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 9999999999888642 0000000 000111
Q ss_pred -----------------------------------------------HhCC-chHHHHHHHHhHHC-C-CCC--------
Q 007288 291 -----------------------------------------------EKSG-SSECLNMFSKMKSE-R-FSP-------- 312 (609)
Q Consensus 291 -----------------------------------------------~~~~-~~~a~~~~~~m~~~-~-~~p-------- 312 (609)
.+.| .++|.++|+..... + -.+
T Consensus 340 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l 419 (987)
T PRK09782 340 PANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARL 419 (987)
T ss_pred CcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHH
Confidence 1223 33344443333220 0 001
Q ss_pred --------------------------------------------------------CHHhHHHHHHHHHhhccHHHHHHH
Q 007288 313 --------------------------------------------------------NCFTFTSIIAACATLAALSCGQQV 336 (609)
Q Consensus 313 --------------------------------------------------------~~~t~~~ll~~~~~~~~~~~a~~~ 336 (609)
+...|..+..++.. ++.++|...
T Consensus 420 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a 498 (987)
T PRK09782 420 ASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYA 498 (987)
T ss_pred HHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHH
Confidence 11112222222222 444556665
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007288 337 HAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414 (609)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 414 (609)
+....... |+......+...+...|++++|...|+.+.. ++...+..+...+.+.|+.++|...+++..+.. |+
T Consensus 499 ~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~ 574 (987)
T PRK09782 499 WLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LG 574 (987)
T ss_pred HHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--Cc
Confidence 55554432 3433333444555678888888888887653 344456666777888899999999998888753 43
Q ss_pred H-HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHH
Q 007288 415 R-IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD-ESVWGPLLGA 491 (609)
Q Consensus 415 ~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~ 491 (609)
. ..+..+...+...|++++|...+++..+.. |+...+..+..++.+.|++++|+..+++. ...|+ ...+..+..+
T Consensus 575 ~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~a 652 (987)
T PRK09782 575 DNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYA 652 (987)
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3 333344445556699999999999987644 56788889999999999999999999888 55665 4556666678
Q ss_pred HHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 492 CKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 492 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
+...|++++|+..++++++..|+++..+..++.++...|++++|...+++..+..
T Consensus 653 L~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 653 LWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999998744
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.88 E-value=1.5e-17 Score=179.62 Aligned_cols=488 Identities=13% Similarity=0.058 Sum_probs=333.9
Q ss_pred hhHHhHHHHHHHccCChhHHHHhhccCCC--CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCC---------------
Q 007288 46 SILATNLIKSYFDEGLIEEARTLFDEMPE--RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV--------------- 108 (609)
Q Consensus 46 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--------------- 108 (609)
..++..|...|.+.|++++|+..+++..+ |+-..|..++..+ +++++|..+++++.+...
T Consensus 78 ~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~ 154 (987)
T PRK09782 78 IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVG 154 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhc
Confidence 67778999999999999999999988764 3323333333222 677777777777765321
Q ss_pred -----------------------CCCcchHHHH-HHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHh-cCCC
Q 007288 109 -----------------------NPNAFTLSSV-LKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT-CCIS 163 (609)
Q Consensus 109 -----------------------~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~ 163 (609)
.|+..+.... .+.|...+++++|..++..+.+.++. +......|-.+|.. .+ +
T Consensus 155 ~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~-~ 232 (987)
T PRK09782 155 QNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQL-D 232 (987)
T ss_pred cchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhC-H
Confidence 1122222333 55667777888888888888877644 34445555556666 35 5
Q ss_pred HHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCC-CCHhhHHHH----------------------
Q 007288 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVE-MNPYSFSIA---------------------- 220 (609)
Q Consensus 164 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~l---------------------- 220 (609)
+.+..+++...+.+...+..+...|.+.|+.++|.++++++...-.. |+..++..+
T Consensus 233 -~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~ 311 (987)
T PRK09782 233 -DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADN 311 (987)
T ss_pred -HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHH
Confidence 66777766544457777888888888888888888888776543211 221111111
Q ss_pred --------HHHHHccC---------------------------------------------------------------C
Q 007288 221 --------VRACASTG---------------------------------------------------------------W 229 (609)
Q Consensus 221 --------l~~~~~~g---------------------------------------------------------------~ 229 (609)
+..+.+.+ +
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~ 391 (987)
T PRK09782 312 RQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQ 391 (987)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccc
Confidence 11122222 2
Q ss_pred chhHHHHHHHHHHh-C-CCCChhHHHHHHHHHHhcCC---HHHHHHHHH-------------------------hcCC--
Q 007288 230 VSFGKLIHAAVIKH-G-FGSNLPVMNSILDMYCRFDC---LSDANQYFD-------------------------EMTE-- 277 (609)
Q Consensus 230 ~~~a~~~~~~~~~~-g-~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~-------------------------~~~~-- 277 (609)
.++|.++++..... + -..+......++..|.+.+. ..++..+-. ....
T Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 471 (987)
T PRK09782 392 SREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM 471 (987)
T ss_pred HHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC
Confidence 33333333332220 0 11122333455555555544 222222210 1100
Q ss_pred -C--ChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHH
Q 007288 278 -K--DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353 (609)
Q Consensus 278 -~--~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 353 (609)
+ +...|..+..++.. + ..+|+..+.+.... .|+......+...+...|+++.|...++.+... +|+...+.
T Consensus 472 p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~ 546 (987)
T PRK09782 472 SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLL 546 (987)
T ss_pred CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHH
Confidence 1 34456666666665 5 77899988777664 466655444555567899999999999987654 34445566
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHH---HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 007288 354 ALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSM---MIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430 (609)
Q Consensus 354 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 430 (609)
.+..++.+.|+.++|...|+...+.+....+.. .......|++++|...+++..+ ..|+...+..+...+.+.|+
T Consensus 547 ~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~ 624 (987)
T PRK09782 547 AAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHN 624 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCC
Confidence 778889999999999999998886443333333 3334455999999999999998 46788899999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHH
Q 007288 431 VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRV 508 (609)
Q Consensus 431 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 508 (609)
+++|+..+++..... +.+...++.+..++...|++++|++.+++. ...| +...+..+..++...|++++|+..++++
T Consensus 625 ~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 625 VPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999997765 336778888999999999999999999987 4556 4667888889999999999999999999
Q ss_pred hccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 509 LDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 509 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
+++.|++..+....++...+..+++.|.+-+++--.-++
T Consensus 704 l~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 704 IDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 999999999999999999999999999998887765444
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=3.3e-19 Score=170.94 Aligned_cols=463 Identities=11% Similarity=0.104 Sum_probs=351.5
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCC---CChhhHHHHHHHHHhc
Q 007288 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW---KNDVSWTTLITGYAHS 192 (609)
Q Consensus 116 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 192 (609)
..|..-..+.|++++|++.....-..+.. +....-.+-..+.... +.+.....-....+ .-..+|..+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~-r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGS-RLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhccc-chhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 34445566788999988766555443321 1111111222333333 44443332222211 2457899999999999
Q ss_pred CChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcCCHHHHHHH
Q 007288 193 GNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNL-PVMNSILDMYCRFDCLSDANQY 271 (609)
Q Consensus 193 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 271 (609)
|++++|+.+|+.|++...+ ....|..+..++...|+.+.|.+.|...++. .|+. -+.+.+...+...|++.+|...
T Consensus 130 g~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 9999999999999986322 5678999999999999999999999998886 3443 3445566667778999999998
Q ss_pred HHhcCC--CC-hhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCC-HHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Q 007288 272 FDEMTE--KD-LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPN-CFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346 (609)
Q Consensus 272 ~~~~~~--~~-~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 346 (609)
+.+..+ |. .+.|+.|...+-..| ...|+..|++... +.|+ ...|..+.+.+...+.++.|...+.+..... +
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-p 283 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-P 283 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-C
Confidence 887765 32 367999999999999 9999999999886 4554 3578889999999999999999998877643 3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 007288 347 GNLALANALIDMYAKCGNISDSQKIFSEMSD--RD-LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR-IVFMAVL 422 (609)
Q Consensus 347 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll 422 (609)
.....+..+...|...|.++-|+..|++..+ |+ ...|+.|..++-..|++.+|+..|.+.... .|+. .+.+.|.
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLg 361 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLG 361 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHH
Confidence 4456677788889999999999999999885 43 468999999999999999999999999884 5554 5888999
Q ss_pred HHHhccCCHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHhCCChH
Q 007288 423 TACSHAGLVDEGLKYFKSMNDYNVNPN-KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD-ESVWGPLLGACKEHRLPN 499 (609)
Q Consensus 423 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~ 499 (609)
..+...|.+++|..+|....+ +.|. ....+.|...|-..|++++|+.-+++. .++|+ ...++.+...|...|+.+
T Consensus 362 ni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence 999999999999999998866 3444 557888999999999999999999988 78886 468888899999999999
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCcccCceeEEEeCCEEEEE-EecCCCCCcHHHH
Q 007288 500 LGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGF-IANDKMGSHTQYV 578 (609)
Q Consensus 500 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 578 (609)
.|.+.+.+++.++|.-..++..|+.+|-.+|+..+|+.-+++..+..+..+.+.+ |.+|.+ +..+ --...+.
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~c-----Nllh~lq~vcd--w~D~d~~ 512 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYC-----NLLHCLQIVCD--WTDYDKR 512 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhh-----HHHHHHHHHhc--ccchHHH
Confidence 9999999999999988999999999999999999999999999885543222221 111111 1111 1234455
Q ss_pred HHHHHHHHHHHHHcCcccC
Q 007288 579 YGVLEMLIRHMNETAYEPD 597 (609)
Q Consensus 579 ~~~~~~l~~~m~~~g~~pd 597 (609)
++++.++...-.++..-|.
T Consensus 513 ~~kl~sivrdql~~~rlps 531 (966)
T KOG4626|consen 513 MKKLVSIVRDQLEKNRLPS 531 (966)
T ss_pred HHHHHHHHHHHHhhhcCCc
Confidence 6667777776665554444
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=1.7e-17 Score=176.11 Aligned_cols=247 Identities=10% Similarity=0.026 Sum_probs=201.4
Q ss_pred chHHHHHHHHhHHCC-CCC-CHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 007288 295 SSECLNMFSKMKSER-FSP-NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIF 372 (609)
Q Consensus 295 ~~~a~~~~~~m~~~~-~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 372 (609)
+++|.+.|++..+.+ ..| +...+..+...+...|+++.|...++...+.. +.....|..+..++...|++++|...|
T Consensus 310 y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~ 388 (615)
T TIGR00990 310 YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDF 388 (615)
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 788999999888764 234 34566777777788999999999999988764 334567788888999999999999999
Q ss_pred HhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCC
Q 007288 373 SEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP-DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP 448 (609)
Q Consensus 373 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 448 (609)
+.+.+ .+...|..+...+...|++++|+..|++..+. .| +...+..+...+.+.|++++|+..|++..+.. +.
T Consensus 389 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~ 465 (615)
T TIGR00990 389 DKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PE 465 (615)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 98764 35678888999999999999999999999985 44 45677888889999999999999999987643 34
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-h-------hHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchH
Q 007288 449 NKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDE-S-------VWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 519 (609)
+...++.+...+...|++++|++.|++. ...|+. . .++..+..+...|++++|...++++++++|++...+
T Consensus 466 ~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~ 545 (615)
T TIGR00990 466 APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAV 545 (615)
T ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 5788899999999999999999999886 444431 1 112222334457999999999999999999888899
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 520 IILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 520 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
..++.++.+.|++++|+.+|++..+.
T Consensus 546 ~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 546 ATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999999998764
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=4.5e-19 Score=178.70 Aligned_cols=298 Identities=11% Similarity=0.090 Sum_probs=200.9
Q ss_pred HHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCchHHHHHH
Q 007288 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMF 302 (609)
Q Consensus 223 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~ 302 (609)
.+...|++++|...|..+.+.+ +.+..++..+...+.+.|++++|..+++.+...
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------------------------ 98 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSR------------------------ 98 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC------------------------
Confidence 3455666777777777766653 334456666666666666666666666655431
Q ss_pred HHhHHCCCCCC---HHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-
Q 007288 303 SKMKSERFSPN---CFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR- 378 (609)
Q Consensus 303 ~~m~~~~~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 378 (609)
...++ ...+..+...+...|+++.|..+|..+.+.. +.+..+++.++.++.+.|++++|.+.++.+.+.
T Consensus 99 ------~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (389)
T PRK11788 99 ------PDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG 171 (389)
T ss_pred ------CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc
Confidence 11110 1233444444445555555555555544431 233444555555555555555555555555421
Q ss_pred -C------cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChh
Q 007288 379 -D------LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE 451 (609)
Q Consensus 379 -~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 451 (609)
+ ...+..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......
T Consensus 172 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 250 (389)
T PRK11788 172 GDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSE 250 (389)
T ss_pred CCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHH
Confidence 1 1134556677788889999999998888743 2234577778888899999999999999986654333356
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh--
Q 007288 452 IYGCVVDLLGRAGRVKEAYELIKSM-PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA-- 528 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 528 (609)
+++.++.+|.+.|++++|.+.++++ ...|+...+..+...+.+.|++++|...++++++..|++. .+..+...+..
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~ 329 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEA 329 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhcc
Confidence 6788889999999999999999887 4567777778888999999999999999999999999654 56655555553
Q ss_pred -cCChHHHHHHHHHHHhCCCcccCcee
Q 007288 529 -EGKWEEFAKFRKIMRGMGSKKEVGMS 554 (609)
Q Consensus 529 -~g~~~~A~~~~~~m~~~~~~~~~~~~ 554 (609)
.|+.+++..++++|.++++.++|...
T Consensus 330 ~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 330 EEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred CCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 56899999999999999999888753
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=4.2e-16 Score=168.51 Aligned_cols=393 Identities=9% Similarity=-0.043 Sum_probs=198.2
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCC---CCChhhHHHHHHHHHhc
Q 007288 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMK---WKNDVSWTTLITGYAHS 192 (609)
Q Consensus 116 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 192 (609)
.-.+......|+.++|.+++....... +.+...+..+...+...| ++++|..+|+... ..+...+..+...+...
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLK-QWQNSLTLWQKALSLEPQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 333444445555555555555554421 122333555555555555 5555555555532 12445556666677777
Q ss_pred CChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 007288 193 GNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYF 272 (609)
Q Consensus 193 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 272 (609)
|++++|+..+++..... +.+.. +..+..++...|+.++|...++++.+.. +.+..++..+..++...|..++|+..+
T Consensus 97 g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 97 GQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 77777777777776652 22344 6666667777777777777777777764 445555566777777777778788777
Q ss_pred HhcCCCChh--------HHHHHHHHHHh-----CC-c---hHHHHHHHHhHHC-CCCCCHH-hHH----HHHHHHHhhcc
Q 007288 273 DEMTEKDLI--------TWNTIIAGYEK-----SG-S---SECLNMFSKMKSE-RFSPNCF-TFT----SIIAACATLAA 329 (609)
Q Consensus 273 ~~~~~~~~~--------~~~~li~~~~~-----~~-~---~~a~~~~~~m~~~-~~~p~~~-t~~----~ll~~~~~~~~ 329 (609)
+.... ++. ....++..... .+ . ++|+..++.+... ...|+.. .+. ..+.++...|+
T Consensus 174 ~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~ 252 (765)
T PRK10049 174 DDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDR 252 (765)
T ss_pred HhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhh
Confidence 76665 211 11111111111 11 1 4566666666543 1122211 111 11223344566
Q ss_pred HHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------cchHHHHHHHHHhcCCHHHHHH
Q 007288 330 LSCGQQVHAGIVRRGLD-GNLALANALIDMYAKCGNISDSQKIFSEMSDRD-------LVTWTSMMIGYGAHGHGKEAIE 401 (609)
Q Consensus 330 ~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~ 401 (609)
.++|...|+.+.+.+.+ |+. ....+..+|...|++++|+..|+.+.+.+ ......+..++...|++++|..
T Consensus 253 ~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~ 331 (765)
T PRK10049 253 YKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALT 331 (765)
T ss_pred HHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 66666666666555421 111 11223455666666666666666554211 1223334445556666666666
Q ss_pred HHHHHHHCC-----------CCCCH---HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHH
Q 007288 402 LFDEMVKSG-----------VRPDR---IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467 (609)
Q Consensus 402 ~~~~m~~~g-----------~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 467 (609)
+++.+.... -.|+. ..+..+...+...|++++|+++++++.... +.+...+..+...+...|+++
T Consensus 332 ~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~ 410 (765)
T PRK10049 332 VTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPR 410 (765)
T ss_pred HHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHH
Confidence 666655431 01121 122334444445555555555555553322 223444445555555555555
Q ss_pred HHHHHHHhC-CCCCC-HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCc
Q 007288 468 EAYELIKSM-PFKPD-ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMM 516 (609)
Q Consensus 468 ~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 516 (609)
+|++.+++. ...|+ ...+..+...+...|++++|+..++++++..|+++
T Consensus 411 ~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 411 AAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 555555544 33343 22333333444555555555555555555555443
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=1.2e-17 Score=168.21 Aligned_cols=292 Identities=12% Similarity=0.071 Sum_probs=209.9
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCC---hhHHHHHHHHHHh
Q 007288 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSN---LPVMNSILDMYCR 261 (609)
Q Consensus 185 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~ 261 (609)
....+...|++++|+..|+++.+.+. .+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34556778999999999999998742 3556788899999999999999999999887542221 2456777777888
Q ss_pred cCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHH
Q 007288 262 FDCLSDANQYFDEMTE---KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVH 337 (609)
Q Consensus 262 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 337 (609)
.|++++|..+|+++.+ .+..+++.++..+.+.| +++|.+.++.+...+..++...
T Consensus 120 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------------------- 178 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE--------------------- 178 (389)
T ss_pred CCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH---------------------
Confidence 8888888877777654 23344445555555555 5555555555444321111000
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007288 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--R-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414 (609)
Q Consensus 338 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 414 (609)
....+..+...+.+.|++++|...|+++.+ | +...+..+...+.+.|++++|.++++++.+.+....
T Consensus 179 ----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 248 (389)
T PRK11788 179 ----------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL 248 (389)
T ss_pred ----------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH
Confidence 011234566667777888888888877653 2 345677788888999999999999999887532222
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHH
Q 007288 415 RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDESVWGPLLGACK 493 (609)
Q Consensus 415 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~ 493 (609)
..++..++.+|...|++++|...++++.+.. |+...+..++..+.+.|++++|..+++++ ...|+..+++.++..+.
T Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 249 SEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhh
Confidence 4567888899999999999999999987653 56667788899999999999999999876 66789989988887765
Q ss_pred h---CCChHHHHHHHHHHhc
Q 007288 494 E---HRLPNLGKLAALRVLD 510 (609)
Q Consensus 494 ~---~~~~~~a~~~~~~~~~ 510 (609)
. .|+.+++...++++++
T Consensus 327 ~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 327 AEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hccCCccchhHHHHHHHHHH
Confidence 4 4578888888887765
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=9.6e-17 Score=169.68 Aligned_cols=329 Identities=8% Similarity=-0.002 Sum_probs=248.5
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 007288 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMY 259 (609)
Q Consensus 180 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 259 (609)
.....++..+.+.|++++|+.+++........ +...+..++.++...|+++.|...++.+.+.. +.+...+..+...+
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l 120 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVL 120 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 34555677778888999999888888776433 34445555566677889999999988888874 55677788888888
Q ss_pred HhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHH
Q 007288 260 CRFDCLSDANQYFDEMTE--K-DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ 335 (609)
Q Consensus 260 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 335 (609)
.+.|++++|...+++..+ | +...+..+...+...| .++|...++.+......+ ...+.. +..+...|++++|..
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~-~~~l~~~g~~~eA~~ 198 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIAT-CLSFLNKSRLPEDHD 198 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHH-HHHHHHcCCHHHHHH
Confidence 888999999888888764 3 4567788888888888 888888888776643222 222222 334677889999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHH----HHHHHHHHHH
Q 007288 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKE----AIELFDEMVK 408 (609)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~ 408 (609)
.++.+.+....++......+..++.+.|++++|...|+...+ .+...+..+...+...|++++ |...|++..+
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 888887765334444555567788889999999999988774 245677778888889999885 7889998887
Q ss_pred CCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhHH
Q 007288 409 SGVRPD-RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDESVWG 486 (609)
Q Consensus 409 ~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 486 (609)
. .|+ ...+..+...+...|++++|...+++..+... .+...+..+..++.+.|++++|++.++++ ...|+...+.
T Consensus 279 l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~ 355 (656)
T PRK15174 279 F--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWN 355 (656)
T ss_pred h--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHH
Confidence 4 444 45888888889999999999999999876542 24566777888999999999999999887 4556654433
Q ss_pred -HHHHHHHhCCChHHHHHHHHHHhccCCCC
Q 007288 487 -PLLGACKEHRLPNLGKLAALRVLDLKPNM 515 (609)
Q Consensus 487 -~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 515 (609)
.+..++...|+.++|...++++++..|++
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 34567889999999999999999988854
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=2.3e-16 Score=170.48 Aligned_cols=395 Identities=7% Similarity=-0.004 Sum_probs=298.9
Q ss_pred CcchhhHHHHHHHhcCCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHH
Q 007288 146 SIYVENSLMDVYATCCISMDNARLVFNDMKW---KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222 (609)
Q Consensus 146 ~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 222 (609)
+.....-.+.+....| +.++|++++..... .+...+..+...+...|++++|.++|++..... +.+...+..+..
T Consensus 14 ~~~~~~d~~~ia~~~g-~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAG-QDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4445556677777888 99999999988764 345568999999999999999999999988762 234566777888
Q ss_pred HHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCC-chHH
Q 007288 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE--K-DLITWNTIIAGYEKSG-SSEC 298 (609)
Q Consensus 223 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~-~~~a 298 (609)
.+...|++++|...++.+.+.. +.+.. +..+..++...|+.++|+..++++.+ | +...+..+...+...+ .++|
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Confidence 8899999999999999999873 55666 88899999999999999999999865 3 4556667777888888 8889
Q ss_pred HHHHHHhHHCCCCCCHH------hHHHHHHHH-----HhhccH---HHHHHHHHHHHHh-CCCCchh-HH----HHHHHH
Q 007288 299 LNMFSKMKSERFSPNCF------TFTSIIAAC-----ATLAAL---SCGQQVHAGIVRR-GLDGNLA-LA----NALIDM 358 (609)
Q Consensus 299 ~~~~~~m~~~~~~p~~~------t~~~ll~~~-----~~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~ 358 (609)
+..++.... .|+.. ....++... ...+++ +.|...++.+.+. ...|+.. .+ ...+.+
T Consensus 170 l~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 170 LGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 998886653 33320 111122222 112233 7788888888754 2223221 11 111334
Q ss_pred HHhcCCHHHHHHHHHhcCCCC--cc--hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCH
Q 007288 359 YAKCGNISDSQKIFSEMSDRD--LV--TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP---DRIVFMAVLTACSHAGLV 431 (609)
Q Consensus 359 ~~~~g~~~~A~~~~~~~~~~~--~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~ 431 (609)
+...|++++|...|+.+.+.+ .. .-..+..+|...|++++|+.+|+++.+..... .......+..++...|++
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 567799999999999998532 11 22235678999999999999999988743111 134566677788999999
Q ss_pred HHHHHHHHHhhhcCC-----------CCC---hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhC
Q 007288 432 DEGLKYFKSMNDYNV-----------NPN---KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEH 495 (609)
Q Consensus 432 ~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 495 (609)
++|.+.++.+.+... .|+ ...+..+...+...|++++|++.++++ ...| +...+..+...+...
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 999999999965421 123 234566788899999999999999997 3345 456777888999999
Q ss_pred CChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 496 RLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 496 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
|++++|+..++++++++|++...+..++..+...|++++|..+++++.+..+
T Consensus 407 g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 407 GWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999987543
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=8.4e-16 Score=163.19 Aligned_cols=271 Identities=11% Similarity=0.040 Sum_probs=189.7
Q ss_pred cCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCC-HHhHHHHHHHHHhhccHHHH
Q 007288 262 FDCLSDANQYFDEMTEK------DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPN-CFTFTSIIAACATLAALSCG 333 (609)
Q Consensus 262 ~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a 333 (609)
.+++++|.+.|+...+. ....|+.+...+...| +++|+..|++..+. .|+ ...|..+...+...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 35566666666655431 2344566666666666 77777777776653 343 44666777777788888888
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007288 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--R-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410 (609)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 410 (609)
...++.+.+.. +.+..++..+..++...|++++|...|+...+ | +...+..+...+.+.|++++|+..|++..+.
T Consensus 385 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 385 EEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 88888877664 44567778888888889999999999988864 3 4566777888888999999999999998874
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChh------HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-
Q 007288 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE------IYGCVVDLLGRAGRVKEAYELIKSM-PFKPDE- 482 (609)
Q Consensus 411 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~- 482 (609)
.+-+...+..+...+...|++++|+..|+...+.....+.. .++.....+...|++++|.+++++. ...|+.
T Consensus 463 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~ 542 (615)
T TIGR00990 463 FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECD 542 (615)
T ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 23345688888889999999999999999986644221111 1222223344569999999999886 555644
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 483 SVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 483 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
..+..+...+.+.|++++|...++++.++.+..... .....+.+|.++..+.++
T Consensus 543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~--------~~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAAELARTEGEL--------VQAISYAEATRTQIQVQE 596 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 467788899999999999999999999887743221 122244555555444444
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=5.8e-15 Score=156.51 Aligned_cols=438 Identities=8% Similarity=-0.004 Sum_probs=290.2
Q ss_pred HHHccCChhHHHHhhccCCC--CCcc-cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcc-hHHH--HHHHhhCCCCh
Q 007288 55 SYFDEGLIEEARTLFDEMPE--RDVV-SWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAF-TLSS--VLKACKGMKSL 128 (609)
Q Consensus 55 ~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-t~~~--ll~~~~~~~~~ 128 (609)
...+.|+++.|+..|++..+ |+.. ....++..+...|+.++|+..+++.. .|+.. .+.. +...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 45678888888888887764 3321 12377777777888888888888876 23222 2222 24467777888
Q ss_pred HHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHh--cCChhhHHHHHHHHH
Q 007288 129 SNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAH--SGNGYGGLGVFKEML 206 (609)
Q Consensus 129 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~ 206 (609)
++|.++++++.+..+. +...+..++..+...+ +.++|++.++.+...+......+..++.. .++..+|++.++++.
T Consensus 119 d~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~-q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 119 DQALALWQSSLKKDPT-NPDLISGMIMTQADAG-RGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcC-CHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 8888888888877654 3455556667777777 77777777777765433322223333333 444444777777777
Q ss_pred HCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHH
Q 007288 207 LEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286 (609)
Q Consensus 207 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 286 (609)
+.. +-+...+..++.++.+.|-...|.++... .|+..+-...... +.+.|.+..+....++.. -
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~~-~--- 260 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQL-----ERDAAAEQVRMAVLPTRS-E--- 260 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHHHH-----HHHHHHHHHhhccccccc-c---
Confidence 652 22444556666666666666666655443 2222211111110 111222222111111000 0
Q ss_pred HHHHHhCC-chHHHHHHHHhHHC-CCCCCH-----HhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 007288 287 IAGYEKSG-SSECLNMFSKMKSE-RFSPNC-----FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMY 359 (609)
Q Consensus 287 i~~~~~~~-~~~a~~~~~~m~~~-~~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 359 (609)
- -+-. .+.|+.-++.+... +-.|.. ....-.+-++...++...++..++.+...+.+....+-.++.++|
T Consensus 261 ~---~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~aday 337 (822)
T PRK14574 261 T---ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAY 337 (822)
T ss_pred h---hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Confidence 0 0001 35566666665542 222322 122345667788999999999999999988777777889999999
Q ss_pred HhcCCHHHHHHHHHhcCCC---------CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCCH--H-
Q 007288 360 AKCGNISDSQKIFSEMSDR---------DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV-----------RPDR--I- 416 (609)
Q Consensus 360 ~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~~--~- 416 (609)
...++.++|+.+|+.+..+ +......|.-+|...+++++|..+++++.+... .||. .
T Consensus 338 l~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~ 417 (822)
T PRK14574 338 IDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIE 417 (822)
T ss_pred HhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHH
Confidence 9999999999999998542 222346788999999999999999999987311 2332 2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHh
Q 007288 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD-ESVWGPLLGACKE 494 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~ 494 (609)
.+..++..+...|++.+|++.++++.... +-|......+.+.+...|.+.+|++.++.. ...|+ ..+......++..
T Consensus 418 ~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~ 496 (822)
T PRK14574 418 GQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMA 496 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHh
Confidence 44556677889999999999999996644 558889999999999999999999999776 45665 4556667788889
Q ss_pred CCChHHHHHHHHHHhccCCCCcch
Q 007288 495 HRLPNLGKLAALRVLDLKPNMMGT 518 (609)
Q Consensus 495 ~~~~~~a~~~~~~~~~~~p~~~~~ 518 (609)
.+++++|..+...+.+..|++..+
T Consensus 497 l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 497 LQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred hhhHHHHHHHHHHHHhhCCCchhH
Confidence 999999999999999999977643
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.80 E-value=9.2e-16 Score=162.27 Aligned_cols=327 Identities=10% Similarity=-0.003 Sum_probs=266.3
Q ss_pred hhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHH
Q 007288 215 YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE--K-DLITWNTIIAGYE 291 (609)
Q Consensus 215 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~ 291 (609)
.-...++..+.+.|+++.|..+++..+... +-+...+..++.+....|++++|...|+++.+ | +...+..+...+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 345566778889999999999999999875 44455666667778889999999999999865 3 5567888889999
Q ss_pred hCC-chHHHHHHHHhHHCCCCC-CHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 007288 292 KSG-SSECLNMFSKMKSERFSP-NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369 (609)
Q Consensus 292 ~~~-~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 369 (609)
..| .++|...+++.... .| +...+..+...+...|+.+.|...+..+......+ ...+..+ ..+...|++++|.
T Consensus 122 ~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 122 KSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHH
Confidence 999 99999999999874 34 45677788889999999999999999887765333 3333333 3478899999999
Q ss_pred HHHHhcCCC----CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH----HHHHHHHh
Q 007288 370 KIFSEMSDR----DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDE----GLKYFKSM 441 (609)
Q Consensus 370 ~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~~ 441 (609)
..++.+.+. +...+..+..++...|++++|+..++++.+.. +.+...+..+...+...|++++ |...+++.
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 999987653 23344555678889999999999999999853 3345678888999999999986 89999999
Q ss_pred hhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchH
Q 007288 442 NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD-ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519 (609)
Q Consensus 442 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 519 (609)
.+.. +.+...+..+...+...|++++|+..+++. ...|+ ...+..+..++.+.|++++|...++++.+..|++...+
T Consensus 277 l~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~ 355 (656)
T PRK15174 277 LQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWN 355 (656)
T ss_pred HhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHH
Confidence 7754 336778899999999999999999999988 44565 45666777899999999999999999999999877767
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 007288 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSK 548 (609)
Q Consensus 520 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 548 (609)
..++.++...|++++|...|++..+..+.
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 77889999999999999999999876543
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=1.1e-14 Score=154.28 Aligned_cols=429 Identities=11% Similarity=0.029 Sum_probs=267.8
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCc--chHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcc-hhhHH--HHHHHhcC
Q 007288 87 YTSFNCHNQAWTVFVEMVRNEVNPNA--FTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIY-VENSL--MDVYATCC 161 (609)
Q Consensus 87 ~~~~~~~~~a~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l--l~~~~~~g 161 (609)
..+.|+++.|++.|++..+. .|+. ..+ .++..+...|+.++|..++++.. .|+.. .+..+ ...|...|
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcC
Confidence 34666777777777776653 3332 122 55555666666666666666665 22221 22222 33555555
Q ss_pred CCHHHHHHHHccCCCC---ChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHH
Q 007288 162 ISMDNARLVFNDMKWK---NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHA 238 (609)
Q Consensus 162 ~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 238 (609)
++++|+++|+.+.+. +...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|.+.++
T Consensus 117 -dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 117 -RWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred -CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 666666666665432 3444555556666666666666666666554 3344444333333333444444666666
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHhCCchHHHHHHHHhHHCCCCCCHHhH
Q 007288 239 AVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTF 317 (609)
Q Consensus 239 ~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~ 317 (609)
++.+.. +.+...+..+..++.+.|-...|.++..+-+.- +...+.-|- .+.|.+ ++..+..++.
T Consensus 194 kll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~-------~~~~a~----~vr~a~~~~~--- 258 (822)
T PRK14574 194 EAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLE-------RDAAAE----QVRMAVLPTR--- 258 (822)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHH-------HHHHHH----HHhhcccccc---
Confidence 666653 445555566666666666666666655554321 000000000 011111 1111111110
Q ss_pred HHHHHHHHhhcc---HHHHHHHHHHHHHh-CCCCc-hh----HHHHHHHHHHhcCCHHHHHHHHHhcCCC----CcchHH
Q 007288 318 TSIIAACATLAA---LSCGQQVHAGIVRR-GLDGN-LA----LANALIDMYAKCGNISDSQKIFSEMSDR----DLVTWT 384 (609)
Q Consensus 318 ~~ll~~~~~~~~---~~~a~~~~~~~~~~-~~~~~-~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~ 384 (609)
....+ .+.|..-++.+... +-.|. .. ...-.+-++...|+..++++.|+.+..+ ...+-.
T Consensus 259 -------~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~ 331 (822)
T PRK14574 259 -------SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARR 331 (822)
T ss_pred -------cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHH
Confidence 01112 33344444444431 11122 11 2223455678899999999999999953 234556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCC-----------CC
Q 007288 385 SMMIGYGAHGHGKEAIELFDEMVKSG-----VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV-----------NP 448 (609)
Q Consensus 385 ~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~ 448 (609)
.+.++|...+++++|+.+|+.+.... ..++......|.-++...+++++|..+++.+.+... .|
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~p 411 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEP 411 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCC
Confidence 78899999999999999999997642 122334467889999999999999999999966221 12
Q ss_pred C---hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHH
Q 007288 449 N---KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523 (609)
Q Consensus 449 ~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 523 (609)
+ ...+..++..+.-.|+..+|++.++++ ...| |...+..+...+...|.+..|+..++.+..+.|++..+....+
T Consensus 412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~ 491 (822)
T PRK14574 412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQA 491 (822)
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHH
Confidence 2 223445678889999999999999998 4445 6677778889999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCC
Q 007288 524 NIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 524 ~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
.++...|+|.+|..+.+.+....+
T Consensus 492 ~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 492 ETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhCC
Confidence 999999999999999988876544
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=2.5e-15 Score=138.50 Aligned_cols=254 Identities=13% Similarity=0.141 Sum_probs=185.0
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHH
Q 007288 76 DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMD 155 (609)
Q Consensus 76 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 155 (609)
+..+|..||.++|+-...++|.++|++......+.+..+||.+|.+-+-... ++++.+|......||..|+|+++.
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHH
Confidence 4456777777777777777777777777776667777777777766433222 567777777777777777777777
Q ss_pred HHHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchh-HH
Q 007288 156 VYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSF-GK 234 (609)
Q Consensus 156 ~~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~-a~ 234 (609)
..++.| +++.|.+ .|++++.+|++.|+.|...+|..+|..+++.++..+ +.
T Consensus 282 c~akfg-~F~~ar~---------------------------aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 282 CAAKFG-KFEDARK---------------------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred HHHHhc-chHHHHH---------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 777776 6555543 467888999999999999999999999988887754 44
Q ss_pred HHHHHHHHh----CCC----CChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----------ChhHHHHHHHHHHhCC-
Q 007288 235 LIHAAVIKH----GFG----SNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-----------DLITWNTIIAGYEKSG- 294 (609)
Q Consensus 235 ~~~~~~~~~----g~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~~- 294 (609)
.++.++... .+. .|...+...+..|.+..+.+-|..+-..+... ...-|..+....++..
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 444444432 222 24556777788888888888888876665431 1234556667777777
Q ss_pred chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 007288 295 SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK 361 (609)
Q Consensus 295 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 361 (609)
.+.-+..|+.|.-.-+-|+..+...++++....++++-..+++.+++..|.........-++..+++
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~ 480 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR 480 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc
Confidence 8999999999998888899999999999999999999999999999988755544444444444443
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.78 E-value=6.2e-15 Score=149.48 Aligned_cols=487 Identities=13% Similarity=0.071 Sum_probs=304.7
Q ss_pred HHHHccCChhHHHHhhccCCCCCcccHHHHHHHH---Hc---CCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCC
Q 007288 54 KSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGY---TS---FNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKS 127 (609)
Q Consensus 54 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~---~~---~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 127 (609)
.++.+.|+.+.|+..|++..+.|+..-++++... .. ...+..++.++...-... .-|+...+.|.+.+.-.|+
T Consensus 207 ~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~d 285 (1018)
T KOG2002|consen 207 HCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKD 285 (1018)
T ss_pred hHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhccc
Confidence 5566777777777777776664443333333211 11 123344555554444322 1255566666677777777
Q ss_pred hHHHHHHHHHHHHhCCC--CCcchhhHHHHHHHhcCCCHHHHHHHHccCCCC--C--hhhHHHHHHHHHhcCChhhHHHH
Q 007288 128 LSNAALVHGMAIKEGLE--GSIYVENSLMDVYATCCISMDNARLVFNDMKWK--N--DVSWTTLITGYAHSGNGYGGLGV 201 (609)
Q Consensus 128 ~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~--~--~~~~~~li~~~~~~g~~~~a~~~ 201 (609)
++.+..+...+...... .-...|-.+.++|...| +++.|...|...... + +..+--|...+.+.|+++.+...
T Consensus 286 y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~G-d~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~ 364 (1018)
T KOG2002|consen 286 YERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQG-DFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFC 364 (1018)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHH
Confidence 77777777776654321 11233555666777777 777777777655432 1 33455566777777777777777
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHccC----CchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhc--
Q 007288 202 FKEMLLEGVEMNPYSFSIAVRACASTG----WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-- 275 (609)
Q Consensus 202 ~~~m~~~g~~p~~~t~~~ll~~~~~~g----~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-- 275 (609)
|+..... .+-+..|...|...|+..+ ..+.|..++....+.- +.|...|-.+...|-...-+ .++.+|...
T Consensus 365 fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d 441 (1018)
T KOG2002|consen 365 FEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALD 441 (1018)
T ss_pred HHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHH
Confidence 7777664 2334455656655555553 3455555555555443 44555666555555443322 223333322
Q ss_pred ------CCCChhHHHHHHHHHHhCC-chHHHHHHHHhHHC---CCCCCH------HhHHHHHHHHHhhccHHHHHHHHHH
Q 007288 276 ------TEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSE---RFSPNC------FTFTSIIAACATLAALSCGQQVHAG 339 (609)
Q Consensus 276 ------~~~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~---~~~p~~------~t~~~ll~~~~~~~~~~~a~~~~~~ 339 (609)
....+...|.+.......| +.+|...|...... ...+|. .+-..+....-..++.+.|.+.|..
T Consensus 442 ~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~ 521 (1018)
T KOG2002|consen 442 ILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKS 521 (1018)
T ss_pred HHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 1235556677777777777 77777777766543 122222 1222344444556677777777777
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH
Q 007288 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG-VRPDR 415 (609)
Q Consensus 340 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~ 415 (609)
+.+.. +.-+..|-.+..+.-..+...+|...+..+.. .++..+.-+...+.....+..|.+-|....+.- ..+|.
T Consensus 522 Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~ 600 (1018)
T KOG2002|consen 522 ILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDA 600 (1018)
T ss_pred HHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCch
Confidence 77653 11122222222222223566677777777663 455666667777887778878877666665532 23576
Q ss_pred HHHHHHHHHHhc------------cCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCC
Q 007288 416 IVFMAVLTACSH------------AGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM--PFKPD 481 (609)
Q Consensus 416 ~~~~~ll~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~ 481 (609)
.+...|...|.. .+..++|+++|.+..+.. +-|...-|.+.-.++..|++.+|..+|.+. ...-.
T Consensus 601 YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~ 679 (1018)
T KOG2002|consen 601 YSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDF 679 (1018)
T ss_pred hHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhC
Confidence 766666665543 245678999999887755 347888888899999999999999999988 22335
Q ss_pred HhhHHHHHHHHHhCCChHHHHHHHHHHhcc-CC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 482 ESVWGPLLGACKEHRLPNLGKLAALRVLDL-KP-NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 482 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
..+|-.+..+|..+|++..|+++|+...+. .+ ++......|+.++.+.|++.+|.+.+...+...+
T Consensus 680 ~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 680 EDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred CceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 678899999999999999999999998763 33 6678888999999999999999999888876544
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=2.3e-14 Score=132.27 Aligned_cols=426 Identities=12% Similarity=0.081 Sum_probs=275.7
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhh--CCCChH-HHHHHHHHHHHhCCCCCcchhhHHH
Q 007288 78 VSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACK--GMKSLS-NAALVHGMAIKEGLEGSIYVENSLM 154 (609)
Q Consensus 78 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~ll 154 (609)
.+=|.++. +..+|..+.+.-+|+.|...|+..+...-..|++..+ ...++. .-.+.|-.|.+.|-. +..+|.
T Consensus 117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sWK--- 191 (625)
T KOG4422|consen 117 ETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSWK--- 191 (625)
T ss_pred cchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-cccccc---
Confidence 44555555 4567899999999999999998888776666665532 222222 223445556555543 444442
Q ss_pred HHHHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHH
Q 007288 155 DVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGK 234 (609)
Q Consensus 155 ~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 234 (609)
+-+.|.-+|+ ...++..+|..+|.++|+--..+.|.++|++-.....+.+..+||.+|.+-.-.. .+
T Consensus 192 --------~G~vAdL~~E-~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K 258 (625)
T KOG4422|consen 192 --------SGAVADLLFE-TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GK 258 (625)
T ss_pred --------cccHHHHHHh-hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cH
Confidence 3344444444 4446677899999999999999999999999999888999999999998765433 28
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCchHHHHHHHHhHHCCCCCCH
Q 007288 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNC 314 (609)
Q Consensus 235 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~p~~ 314 (609)
++..+|.+..+.||..|+|+++.+..+.|+++.|.+. |++++.+|++-|+.|..
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a--------------------------alqil~EmKeiGVePsL 312 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA--------------------------ALQILGEMKEIGVEPSL 312 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH--------------------------HHHHHHHHHHhCCCcch
Confidence 8999999999999999999999999999999888764 34556677777777777
Q ss_pred HhHHHHHHHHHhhccHHH-HHHHHHHHHH----hCC----CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------
Q 007288 315 FTFTSIIAACATLAALSC-GQQVHAGIVR----RGL----DGNLALANALIDMYAKCGNISDSQKIFSEMSD-------- 377 (609)
Q Consensus 315 ~t~~~ll~~~~~~~~~~~-a~~~~~~~~~----~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------- 377 (609)
.+|..+|..+++.++..+ +..+..++.. +.+ +.|...+..-+..|.+..+.+-|.++-.-+..
T Consensus 313 sSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig 392 (625)
T KOG4422|consen 313 SSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIG 392 (625)
T ss_pred hhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcC
Confidence 777777777766666543 3333333332 111 22344555566666666676666666555442
Q ss_pred CC---cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHH
Q 007288 378 RD---LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG 454 (609)
Q Consensus 378 ~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 454 (609)
++ ..-|..+....++....+.-...|+.|.-.-+-|+..+...++++....+.++-.-++|..++..|...+.....
T Consensus 393 ~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~e 472 (625)
T KOG4422|consen 393 PDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLRE 472 (625)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHH
Confidence 11 123555666667777777777777777766666777777777777777777777777777777766555555444
Q ss_pred HHHHHHhhcC-CH--------HH-----HHHHHHhC--------CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhcc-
Q 007288 455 CVVDLLGRAG-RV--------KE-----AYELIKSM--------PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDL- 511 (609)
Q Consensus 455 ~l~~~~~~~g-~~--------~~-----A~~~~~~~--------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 511 (609)
-+...+++.+ ++ .. |..+++.. ...-.....+...-.+.+.|..++|.+++....+.
T Consensus 473 eil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 473 EILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred HHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 4555555444 11 10 11111111 11123334445555567788888888887777542
Q ss_pred --CCCCc--chHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 512 --KPNMM--GTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 512 --~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
-|..+ .+..-+.+.-.+....-+|...++-|...+.
T Consensus 553 ~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 553 NKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred CcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 23221 2223455555566777788888888766544
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.76 E-value=3.6e-14 Score=144.02 Aligned_cols=477 Identities=10% Similarity=0.062 Sum_probs=233.0
Q ss_pred cCChhHHHHhhccCC--C----CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC-CcchHHHHHHH---hhCCCCh
Q 007288 59 EGLIEEARTLFDEMP--E----RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP-NAFTLSSVLKA---CKGMKSL 128 (609)
Q Consensus 59 ~g~~~~A~~~~~~~~--~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~---~~~~~~~ 128 (609)
.|++..|+.+|.... . +|+.. .+--.+.+.|+.+.|+..|.+..+. .| ++.++..|-.. +-....+
T Consensus 177 kkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqL--dp~~v~alv~L~~~~l~~~d~~s~ 252 (1018)
T KOG2002|consen 177 KKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQL--DPTCVSALVALGEVDLNFNDSDSY 252 (1018)
T ss_pred cccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhc--ChhhHHHHHHHHHHHHHccchHHH
Confidence 456666666666532 1 22211 1112334556666666666666553 22 12222221111 1111223
Q ss_pred HHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCCC------hhhHHHHHHHHHhcCChhhHHHHH
Q 007288 129 SNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKN------DVSWTTLITGYAHSGNGYGGLGVF 202 (609)
Q Consensus 129 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~ 202 (609)
..+...+........ -++.+.+.|...|...| ++..+..+...+...+ ..+|-.+.++|-..|++++|...|
T Consensus 253 ~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~-dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 253 KKGVQLLQRAYKENN-ENPVALNHLANHFYFKK-DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcc-cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 333334333333322 24555555666665555 6666655555443321 223555566666666666666666
Q ss_pred HHHHHCCCCCCHh--hHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC----CHHHHHHHHHhcC
Q 007288 203 KEMLLEGVEMNPY--SFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFD----CLSDANQYFDEMT 276 (609)
Q Consensus 203 ~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~ 276 (609)
.+.... .+|.. .+..+...+...|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..++....
T Consensus 331 ~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~ 407 (1018)
T KOG2002|consen 331 MESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL 407 (1018)
T ss_pred HHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence 555443 22322 23344555566666666666666665552 444455555555555543 3344555554444
Q ss_pred CC---ChhHHHHHHHHHHhCCchHHHHHHHHh----HHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHh---CCC
Q 007288 277 EK---DLITWNTIIAGYEKSGSSECLNMFSKM----KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR---GLD 346 (609)
Q Consensus 277 ~~---~~~~~~~li~~~~~~~~~~a~~~~~~m----~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~ 346 (609)
++ |...|-.+...+-......++.+|... ...+-.+.....|.+.......|++..|...|...... ...
T Consensus 408 ~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n 487 (1018)
T KOG2002|consen 408 EQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVAN 487 (1018)
T ss_pred hcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcC
Confidence 32 344455555555444422224444332 23333355555566665666666666666666555443 111
Q ss_pred Cch------hHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcc---hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007288 347 GNL------ALANALIDMYAKCGNISDSQKIFSEMSDRDLV---TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIV 417 (609)
Q Consensus 347 ~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 417 (609)
++. .+--.+..++-..++.+.|.+.|..+.+..+. .|-.+.......++..+|...+++..... .-+...
T Consensus 488 ~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~a 566 (1018)
T KOG2002|consen 488 KDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNA 566 (1018)
T ss_pred ccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHH
Confidence 221 11222444444555666666666666542221 22222212223355556666666655421 223333
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHh-hhcCCCCChhHHHHHHHHHhh------------cCCHHHHHHHHHhC-CCCC-CH
Q 007288 418 FMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGR------------AGRVKEAYELIKSM-PFKP-DE 482 (609)
Q Consensus 418 ~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~-~~~p-~~ 482 (609)
+..+...+.+...+..|..-|... .+....+|..+.-+|.+.|.. .+..++|+++|.+. ...| |.
T Consensus 567 rsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~ 646 (1018)
T KOG2002|consen 567 RSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNM 646 (1018)
T ss_pred HHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 333444455555555555544444 222222444444444443321 23455666666655 3333 44
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 483 SVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 483 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
..-+-+.-.++..|++..|..+|.++.+..-+...+|..++++|..+|+|-.|+++|+...++
T Consensus 647 yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 647 YAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred hhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555666777777777777776655555667777777777777777777777666554
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.71 E-value=6.1e-15 Score=136.86 Aligned_cols=468 Identities=13% Similarity=0.076 Sum_probs=317.2
Q ss_pred ccCChhHHHHhhccCCC--------------C---Cc-ccHHH---HHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHH
Q 007288 58 DEGLIEEARTLFDEMPE--------------R---DV-VSWTV---MIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLS 116 (609)
Q Consensus 58 ~~g~~~~A~~~~~~~~~--------------~---~~-~~~~~---li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~ 116 (609)
.+|++.+|++--....+ | |. .+|.. +..-|..+....+|+..|+-+.++..-|+.....
T Consensus 161 ~~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lk 240 (840)
T KOG2003|consen 161 ECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILK 240 (840)
T ss_pred hhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceee
Confidence 46788877765544321 1 11 23444 3445666677889999999998887777776543
Q ss_pred H-HHHHhhCCCChHHHHHHHHHHHHhCCCCCcc----hhhHHHHHHHhcCCCHHHHHHHHccCCC--CChhh-HHHHHHH
Q 007288 117 S-VLKACKGMKSLSNAALVHGMAIKEGLEGSIY----VENSLMDVYATCCISMDNARLVFNDMKW--KNDVS-WTTLITG 188 (609)
Q Consensus 117 ~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~g~~~~~A~~~~~~~~~--~~~~~-~~~li~~ 188 (609)
. +-+.+.+.+.+..|.++++..+..-+..+.. +.+.+--.+.+.| .+++|+..|+...+ |+..+ +|.+| +
T Consensus 241 mnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~g-qy~dainsfdh~m~~~pn~~a~~nl~i-~ 318 (840)
T KOG2003|consen 241 MNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAG-QYDDAINSFDHCMEEAPNFIAALNLII-C 318 (840)
T ss_pred eeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecc-cchhhHhhHHHHHHhCccHHhhhhhhh-h
Confidence 2 3355778889999999999888765443333 3444445577888 99999999998754 55544 55444 4
Q ss_pred HHhcCChhhHHHHHHHHHHCCCCCCHh------------hHHHHHH-----HHHccC--CchhHHHHHHHHHHhCCCCCh
Q 007288 189 YAHSGNGYGGLGVFKEMLLEGVEMNPY------------SFSIAVR-----ACASTG--WVSFGKLIHAAVIKHGFGSNL 249 (609)
Q Consensus 189 ~~~~g~~~~a~~~~~~m~~~g~~p~~~------------t~~~ll~-----~~~~~g--~~~~a~~~~~~~~~~g~~~~~ 249 (609)
+..-|+-++..+.|.+|+.-...||.. ..+..+. -.-+.. +.+++.-.-..++.--+.|+-
T Consensus 319 ~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~f 398 (840)
T KOG2003|consen 319 AFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDF 398 (840)
T ss_pred heecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccch
Confidence 455789999999999998754333332 2222221 111111 111111111111111122221
Q ss_pred h-------------HH--------HHHHHHHHhcCCHHHHHHHHHhcCCCChhHHH-----HHHHHHHhCC--chHHHHH
Q 007288 250 P-------------VM--------NSILDMYCRFDCLSDANQYFDEMTEKDLITWN-----TIIAGYEKSG--SSECLNM 301 (609)
Q Consensus 250 ~-------------~~--------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~li~~~~~~~--~~~a~~~ 301 (609)
. .+ -.-..-|.+.|+++.|.++++-..+.|..+-+ .-.--|.+.| +..|.+.
T Consensus 399 a~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqy 478 (840)
T KOG2003|consen 399 AAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQY 478 (840)
T ss_pred hcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHH
Confidence 0 00 01123477899999999999888765543322 2223344445 5666555
Q ss_pred HHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CC
Q 007288 302 FSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS---DR 378 (609)
Q Consensus 302 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~ 378 (609)
-+...... .-+....+.--+.....|++++|...+++.....-.-....|| +.-.+-..|++++|+..|-.+. ..
T Consensus 479 ad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~n 556 (840)
T KOG2003|consen 479 ADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLN 556 (840)
T ss_pred HHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHh
Confidence 55444321 1122222222233345789999999999998765444444444 3334677899999999998776 46
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 007288 379 DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVD 458 (609)
Q Consensus 379 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 458 (609)
++.....+...|-...+...|++++.+.... ++.|......|...|-+.|+-..|.+++-.--+ -++-+..+..-|..
T Consensus 557 n~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~a 634 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAA 634 (840)
T ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHH
Confidence 7777777888898999999999999887763 455667889999999999999999988766533 24567888888888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCCHhhHHHHH-HHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 007288 459 LLGRAGRVKEAYELIKSM-PFKPDESVWGPLL-GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK 531 (609)
Q Consensus 459 ~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 531 (609)
.|....-+++|+..|++. -++|+..-|..++ +++++.|++++|..+|+...+..|.+......|++.+...|.
T Consensus 635 yyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 635 YYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 899999999999999998 5789999999998 556789999999999999999999999999999999998885
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.69 E-value=6.8e-12 Score=126.96 Aligned_cols=486 Identities=11% Similarity=0.114 Sum_probs=281.7
Q ss_pred HHHccCChhHHHHhhccCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHH
Q 007288 55 SYFDEGLIEEARTLFDEMPE---RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNA 131 (609)
Q Consensus 55 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 131 (609)
.+...|+.++|.+++.++.+ .+..+|.+|...|-..|+.+++...+-..--... -|...|..+.......|.+.+|
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcccHHHH
Confidence 33445999999999999875 3567788888888888888888776655443322 2446667666667777777777
Q ss_pred HHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCC----------------------------------
Q 007288 132 ALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK---------------------------------- 177 (609)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~---------------------------------- 177 (609)
.-.+.+.++..+. +....-.-...|-+.| +...|...|.++...
T Consensus 227 ~~cy~rAI~~~p~-n~~~~~ers~L~~~~G-~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 227 RYCYSRAIQANPS-NWELIYERSSLYQKTG-DLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHhcCCc-chHHHHHHHHHHHHhC-hHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 7777777766543 3333334455556666 666665555544321
Q ss_pred ----------ChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHh----------------------hHH----HHH
Q 007288 178 ----------NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPY----------------------SFS----IAV 221 (609)
Q Consensus 178 ----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----------------------t~~----~ll 221 (609)
+...+|.++..+.+...++.|......+......+|.. .|. -++
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ 384 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM 384 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh
Confidence 22334455555555555555555555554411111111 111 111
Q ss_pred HHHHccCCchhHHHHHHHHHHhCC--CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHhCC-
Q 007288 222 RACASTGWVSFGKLIHAAVIKHGF--GSNLPVMNSILDMYCRFDCLSDANQYFDEMTE----KDLITWNTIIAGYEKSG- 294 (609)
Q Consensus 222 ~~~~~~g~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~- 294 (609)
-++......+....+......... .-++..|.-+..+|.+.|++.+|+.+|..+.. .+...|-.+..+|...+
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 122333344444444444455442 23455677777888888888888888888765 25567888888888888
Q ss_pred chHHHHHHHHhHHCCCCCCH-HhHHHHHHHHHhhccHHHHHHHHHHHHHhC--------CCCchhHHHHHHHHHHhcCCH
Q 007288 295 SSECLNMFSKMKSERFSPNC-FTFTSIIAACATLAALSCGQQVHAGIVRRG--------LDGNLALANALIDMYAKCGNI 365 (609)
Q Consensus 295 ~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~ 365 (609)
.++|.+.|.+.+.. .|+. ..-..+-..+.+.|+.++|.+.+..+..-+ +.|+....-...+.+...|+.
T Consensus 465 ~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 465 YEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred HHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 88888888887764 3433 334455566677888888888887765321 234444444455566666666
Q ss_pred HHHHHHHHhcCC----------------------------------------C------------Cc-------------
Q 007288 366 SDSQKIFSEMSD----------------------------------------R------------DL------------- 380 (609)
Q Consensus 366 ~~A~~~~~~~~~----------------------------------------~------------~~------------- 380 (609)
++=..+-..|.. + +.
T Consensus 543 E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsi 622 (895)
T KOG2076|consen 543 EEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSI 622 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcH
Confidence 553322211110 0 00
Q ss_pred ----chHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCH---HHHHHHHHHHhccCCHHHHHHHHHHhhhc-CCCCC-
Q 007288 381 ----VTWTSMMIGYGAHGHGKEAIELFDEMVKSGV--RPDR---IVFMAVLTACSHAGLVDEGLKYFKSMNDY-NVNPN- 449 (609)
Q Consensus 381 ----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~- 449 (609)
..+.-++.++++.+++++|+.+...+..... .++. ..-...+.+++..+++..|...++.|... +...+
T Consensus 623 ddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~ 702 (895)
T KOG2076|consen 623 DDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDV 702 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhh
Confidence 0133456677888888888888887776421 2222 12233455667788888888888887432 21111
Q ss_pred --hhHHHHHHHHHh-----------------------------------hcCCHHHHHHHHHhC-CCCCCHhhHHHHHHH
Q 007288 450 --KEIYGCVVDLLG-----------------------------------RAGRVKEAYELIKSM-PFKPDESVWGPLLGA 491 (609)
Q Consensus 450 --~~~~~~l~~~~~-----------------------------------~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~ 491 (609)
...|+...+.+. .++.+.-|+..+-+. ...||.+..+.++..
T Consensus 703 ~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lgl 782 (895)
T KOG2076|consen 703 YQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGL 782 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 223332222222 223344555444333 334554444444322
Q ss_pred -H----------HhCCChHHHHHHHHHHhccCCC--CcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 492 -C----------KEHRLPNLGKLAALRVLDLKPN--MMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 492 -~----------~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
+ .++-..-.+...+.+..++.-. ....+..++.+|-..|-..-|..++++...-
T Consensus 783 afih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 783 AFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEV 849 (895)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCC
Confidence 1 1112233455555555554432 4568889999999999999999999999874
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.61 E-value=1.5e-10 Score=113.06 Aligned_cols=493 Identities=10% Similarity=0.026 Sum_probs=374.1
Q ss_pred HHHccCChhHHHHhhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHHHH
Q 007288 55 SYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALV 134 (609)
Q Consensus 55 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 134 (609)
+.......++|+-++.+..+--.. -.-|.-+|++..-++.|..+++..++. ++-+...|.+....=-..|..+.+.++
T Consensus 385 aAVelE~~~darilL~rAveccp~-s~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 385 AAVELEEPEDARILLERAVECCPQ-SMDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred HHHhccChHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 334467777788888776641111 123344556666788888888888875 666777887777766777888888777
Q ss_pred HHHHH----HhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCC------CChhhHHHHHHHHHhcCChhhHHHHHHH
Q 007288 135 HGMAI----KEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW------KNDVSWTTLITGYAHSGNGYGGLGVFKE 204 (609)
Q Consensus 135 ~~~~~----~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~ 204 (609)
.++-+ ..|+..+...|-.=...+-..| ..--+..+...... .-..+|+.-...|.+.+.++-|..+|..
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag-sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~ 541 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAG-SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH 541 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcC-ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence 76543 3477777777766666666666 66666555554431 1345788888899999999999999988
Q ss_pred HHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChh
Q 007288 205 MLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE---KDLI 281 (609)
Q Consensus 205 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~ 281 (609)
..+. .+-+...|..+...--..|..+....+++.++..- +-....|-....-+-..|++..|..++...-+ .+..
T Consensus 542 alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnsee 619 (913)
T KOG0495|consen 542 ALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEE 619 (913)
T ss_pred HHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHH
Confidence 8775 23345556666666677888999999999988873 55666777777788888999999998887754 3556
Q ss_pred HHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 007288 282 TWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360 (609)
Q Consensus 282 ~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 360 (609)
.|-+-+.....+. .+.|..+|.+.... .|+...|.--++..--.++.++|.+++++..+. .+.-...|-.+.+.+-
T Consensus 620 iwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHH
Confidence 7777777778888 99999999888764 567777766666666788999999999888775 3445667888899999
Q ss_pred hcCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 007288 361 KCGNISDSQKIFSEMSD--R-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY 437 (609)
Q Consensus 361 ~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 437 (609)
..++++.|...|..-.+ | .+..|-.|...--+.|++-+|..++++..-++ +-|...|...|+.=.+.|..+.|..+
T Consensus 697 ~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999988775 4 44567777777778889999999999988764 34667899999999999999999999
Q ss_pred HHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcc
Q 007288 438 FKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG 517 (609)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 517 (609)
+.+... .++.+...|..-|....+.++-..+...+++... |.-+.-.....+....+++.|.+-|+++++.+|++..
T Consensus 776 makALQ-ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~--dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD 852 (913)
T KOG0495|consen 776 MAKALQ-ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH--DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGD 852 (913)
T ss_pred HHHHHH-hCCccchhHHHHHHhccCcccchHHHHHHHhccC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccch
Confidence 888854 2455777888888888899998888888888754 4444555667788888999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCcccCceeEEEeCCE
Q 007288 518 TYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDK 561 (609)
Q Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 561 (609)
+|..+...+.+.|.-++-.+++.+..... |.-+..|..+...
T Consensus 853 ~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~avSK~ 894 (913)
T KOG0495|consen 853 AWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAVSKD 894 (913)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHHhhh
Confidence 99999999999999999999998887643 3345566655444
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.60 E-value=6.1e-10 Score=108.89 Aligned_cols=446 Identities=11% Similarity=0.069 Sum_probs=334.3
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCH
Q 007288 85 AGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164 (609)
Q Consensus 85 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 164 (609)
.+.+...+.+.|.-++.+..+- ++.+. -|..++++...++.|..++...++. ++-+..+|.+-...--..| +.
T Consensus 384 KaAVelE~~~darilL~rAvec-cp~s~----dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ng-n~ 456 (913)
T KOG0495|consen 384 KAAVELEEPEDARILLERAVEC-CPQSM----DLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANG-NV 456 (913)
T ss_pred HHHHhccChHHHHHHHHHHHHh-ccchH----HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcC-CH
Confidence 3445566777788888888774 22222 3445667777888899999888775 4447778877777777777 88
Q ss_pred HHHHHHHccCCC--------CChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC--HhhHHHHHHHHHccCCchhHH
Q 007288 165 DNARLVFNDMKW--------KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMN--PYSFSIAVRACASTGWVSFGK 234 (609)
Q Consensus 165 ~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~ 234 (609)
+...++.++-.. -+...|-.=...|-..|..-.+..+....+..|+.-. ..||..-...|.+.+-++-+.
T Consensus 457 ~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~car 536 (913)
T KOG0495|consen 457 DMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECAR 536 (913)
T ss_pred HHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHH
Confidence 888888875431 2455566666677777888888888888877776633 357888888899999999999
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCC
Q 007288 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE---KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERF 310 (609)
Q Consensus 235 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~ 310 (609)
.+|...++. ++.+...|......--..|..++-..+|++... .....|-....-+-..| ...|..++....+...
T Consensus 537 AVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p 615 (913)
T KOG0495|consen 537 AVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP 615 (913)
T ss_pred HHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC
Confidence 999988876 466778888888877788888988888888764 35566777777788888 8899999888887532
Q ss_pred CCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCc-chHHHHH
Q 007288 311 SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--RDL-VTWTSMM 387 (609)
Q Consensus 311 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li 387 (609)
-+...+...+........++.|..+|.+... ..++..+|..-++..--.++.++|.+++++..+ |+- ..|-.+.
T Consensus 616 -nseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlG 692 (913)
T KOG0495|consen 616 -NSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLG 692 (913)
T ss_pred -CcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHh
Confidence 2556777777778888899999999988766 457777887777777778999999999988875 333 4677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCH
Q 007288 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRI-VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466 (609)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 466 (609)
+.+-+.++.+.|.+.|..-.+. -|+.. .|..|...=.+.|.+..|..++++..-.+ +-+...|-..|.+=.+.|..
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~ 769 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNK 769 (913)
T ss_pred HHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCH
Confidence 8888888888888887765553 45544 66666666677889999999999986655 34778888889999999999
Q ss_pred HHHHHHHHhC--CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 467 KEAYELIKSM--PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 467 ~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
+.|..++.+. ....+...|..-|...-+.++-......+++.. .|+.....++..+....+++.|.+.|.+..+
T Consensus 770 ~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce----~dphVllaia~lfw~e~k~~kar~Wf~Ravk 845 (913)
T KOG0495|consen 770 EQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE----HDPHVLLAIAKLFWSEKKIEKAREWFERAVK 845 (913)
T ss_pred HHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhcc----CCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9998887766 333466777777777777766555555544432 3778888899999999999999999999887
Q ss_pred CCCc
Q 007288 545 MGSK 548 (609)
Q Consensus 545 ~~~~ 548 (609)
.+..
T Consensus 846 ~d~d 849 (913)
T KOG0495|consen 846 KDPD 849 (913)
T ss_pred cCCc
Confidence 6543
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.59 E-value=6.7e-12 Score=127.03 Aligned_cols=320 Identities=14% Similarity=0.112 Sum_probs=221.0
Q ss_pred HHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhc---CCCChhHHHHHHHHHHhCC-chHHH
Q 007288 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM---TEKDLITWNTIIAGYEKSG-SSECL 299 (609)
Q Consensus 224 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~-~~~a~ 299 (609)
+...|+.++|..++.++++.. +.+...|.+|...|-..|+.+++...+-.. ...|...|..+..-..+.| +.+|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 333477777777777777764 556667777777777777777776655433 2345566777777777777 77777
Q ss_pred HHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHH----HHHHHHHHhcCCHHHHHHHHHhc
Q 007288 300 NMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA----NALIDMYAKCGNISDSQKIFSEM 375 (609)
Q Consensus 300 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~ 375 (609)
-.|.+.++.. +++...+---...|-+.|+...|..-|.++.....+.|..-+ -..++.+...++-+.|.+.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 7777777643 233334444555666777777777777777765433332222 22344555666667777777665
Q ss_pred CC-----CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------------------------CCCCHHHHHHHHH
Q 007288 376 SD-----RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG---------------------------VRPDRIVFMAVLT 423 (609)
Q Consensus 376 ~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------------------------~~p~~~~~~~ll~ 423 (609)
.. -+...++.++..|.+...++.|......+.... +.++...+ .+.-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhh
Confidence 53 244567777777888888888888777776521 22222221 1222
Q ss_pred HHhccCCHHHHHHHHHHhhhcC--CCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC---CCCCHhhHHHHHHHHHhCCCh
Q 007288 424 ACSHAGLVDEGLKYFKSMNDYN--VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMP---FKPDESVWGPLLGACKEHRLP 498 (609)
Q Consensus 424 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~~~~~ 498 (609)
++......+....+..-+.+.+ +.-+...|.-+.++|...|++.+|+.+|..+- ..-+...|..+..+|...|.+
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 3333443334444444444445 44457788999999999999999999999982 222577899999999999999
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 499 NLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 499 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
+.|.+.|++++...|++...-..|+..|.+.|+.++|.+.+..+..-+
T Consensus 466 e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 999999999999999999999999999999999999999999887433
No 34
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=1.2e-11 Score=116.59 Aligned_cols=214 Identities=15% Similarity=0.135 Sum_probs=172.4
Q ss_pred hhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHH
Q 007288 326 TLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIEL 402 (609)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 402 (609)
-.|+.-.+..-|+..++....++ ..|--+..+|....+.++....|+...+ .|..+|..-.+.+.-.+++++|..=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 45778888888888887653333 3366777788999999999999988874 4667888888888888999999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 007288 403 FDEMVKSGVRPDR-IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP 480 (609)
Q Consensus 403 ~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 480 (609)
|++.+. +.|+. ..|..+--+..+.+.++++...|++.++ .++-.+++|+.....+...++++.|.+.|+.. .+.|
T Consensus 417 F~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk-kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 417 FQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK-KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 999987 45544 5777777777788999999999999965 35667889999999999999999999999887 3444
Q ss_pred C---------HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 481 D---------ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 481 ~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
+ ..+-..++- +.-.+++..|..+++++++++|.....|..|+..-.+.|+.++|+++|++...
T Consensus 494 ~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3 222222222 33448999999999999999999999999999999999999999999998764
No 35
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.57 E-value=1.8e-11 Score=123.29 Aligned_cols=354 Identities=10% Similarity=0.027 Sum_probs=205.1
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHH
Q 007288 177 KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSIL 256 (609)
Q Consensus 177 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 256 (609)
++..+|.+++..-..+|+.+.|..++.+|++.|++.+..-|..|+-+ .++...++.+.+-|...|+.|+..|+...+
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 57788888888888889999999999999999988888877777765 778888888888888889999988888877
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCC------chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccH
Q 007288 257 DMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG------SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAAL 330 (609)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~------~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 330 (609)
..+.++|....+....+.-.--....+..+..+..... ..-....+.+..-.|+.-....|. +..-....|.-
T Consensus 279 ip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~hQgk~ 357 (1088)
T KOG4318|consen 279 IPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWS-MCEKLRHQGKG 357 (1088)
T ss_pred HhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHH-HHHHHHHcCCC
Confidence 77777555322222111100001122223322211111 111222223322233333332232 22222335666
Q ss_pred HHHHHHHHHHHHhCC---CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHh---cCCHHHHHHHHH
Q 007288 331 SCGQQVHAGIVRRGL---DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA---HGHGKEAIELFD 404 (609)
Q Consensus 331 ~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~ 404 (609)
+.++++...+..--. ..++..+..++ .+.|.++..+...+-.....+... .....+..+++.
T Consensus 358 e~veqlvg~l~npt~r~s~~~V~a~~~~l------------rqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~ 425 (1088)
T KOG4318|consen 358 EEVEQLVGQLLNPTLRDSGQNVDAFGALL------------RQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLE 425 (1088)
T ss_pred chHHHHHhhhcCCccccCcchHHHHHHHH------------HHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHH
Confidence 666666655542111 11222233333 333444433322111111111111 111111111111
Q ss_pred HH------------HH----CCCCC-------CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHh
Q 007288 405 EM------------VK----SGVRP-------DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461 (609)
Q Consensus 405 ~m------------~~----~g~~p-------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 461 (609)
.. .. +...| -...-+.++..|+..-+..+++..-+.....-+. ..|..||+.+.
T Consensus 426 ~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~ 502 (1088)
T KOG4318|consen 426 NLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMD 502 (1088)
T ss_pred HhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHH
Confidence 11 00 00111 1123345555666666666666544444332222 67899999999
Q ss_pred hcCCHHHHHHHHHhCC-----CCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhc---cCCCCcchHHHHHHHHHhcCChH
Q 007288 462 RAGRVKEAYELIKSMP-----FKPDESVWGPLLGACKEHRLPNLGKLAALRVLD---LKPNMMGTYIILSNIYAAEGKWE 533 (609)
Q Consensus 462 ~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~ 533 (609)
.....+.|..+.++.. +.-|...+..+.+...+.+....+..++++..+ ..|........+.+..+..|+.+
T Consensus 503 ~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe 582 (1088)
T KOG4318|consen 503 LHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQE 582 (1088)
T ss_pred HHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHH
Confidence 9999999999999883 334666778888889999999999888888766 34444556677888888999999
Q ss_pred HHHHHHHHHHhCCCcc
Q 007288 534 EFAKFRKIMRGMGSKK 549 (609)
Q Consensus 534 ~A~~~~~~m~~~~~~~ 549 (609)
.-.++.+-+...|+.-
T Consensus 583 ~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 583 KLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHHHHHHHhhhhh
Confidence 9999999998888765
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=8.3e-11 Score=110.41 Aligned_cols=328 Identities=12% Similarity=0.084 Sum_probs=237.7
Q ss_pred CCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-hHHHHHHH
Q 007288 210 VEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL-ITWNTIIA 288 (609)
Q Consensus 210 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~ 288 (609)
..-|..-+-.....+...|..+.|...+...+.. .+-....|..|... ..+.+.+..+.......+. ..--.+..
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~l---it~~e~~~~l~~~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSEL---ITDIEILSILVVGLPSDMHWMKKFFLKK 235 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHh---hchHHHHHHHHhcCcccchHHHHHHHHH
Confidence 3344444444444556778888888888776654 23344444444333 2334444444433333211 11123344
Q ss_pred HHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCH
Q 007288 289 GYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL--DGNLALANALIDMYAKCGNI 365 (609)
Q Consensus 289 ~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 365 (609)
++.... .+++..-.......|+.-+...-+....+.-...++++|+.+|+++.+... -.|..+|..++-.--.+.++
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 555555 777777777777777766666555566666778899999999999998742 13556666665433332222
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 007288 366 SDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR-IVFMAVLTACSHAGLVDEGLKYFKSMNDY 444 (609)
Q Consensus 366 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 444 (609)
.---...-.+.+--+.|..++...|+-.++.++|+..|++..+. .|.. ..|+.+.+-|....+...|++.++.+.+.
T Consensus 316 s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 316 SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI 393 (559)
T ss_pred HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence 22222222233345567778888899999999999999999984 5655 47777788899999999999999999886
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHH
Q 007288 445 NVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522 (609)
Q Consensus 445 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 522 (609)
+ +.|-..|-.|.++|.-.+.+.-|+-.|++. ..+| |...|.+|..+|.+.++.++|+..|.+++...--+...|..|
T Consensus 394 ~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~L 472 (559)
T KOG1155|consen 394 N-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRL 472 (559)
T ss_pred C-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHH
Confidence 6 348889999999999999999999999998 5666 788999999999999999999999999999877678999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 007288 523 SNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 523 ~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
+.+|.+.++.++|...+++-.+
T Consensus 473 akLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999988876
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.57 E-value=2e-11 Score=113.92 Aligned_cols=440 Identities=11% Similarity=0.093 Sum_probs=256.4
Q ss_pred hHHhHHHHHHHccCChhHHHHhhccCCC----CCccc-HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHH--
Q 007288 47 ILATNLIKSYFDEGLIEEARTLFDEMPE----RDVVS-WTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL-- 119 (609)
Q Consensus 47 ~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll-- 119 (609)
.+...|.+-|.......+|+..++-+.+ ||.-. --.+-..+.+..++.+|+.+|+.....-...+..+-..++
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 3455566677777888999998887664 33322 2234456777888888888887776643333333332233
Q ss_pred --HHhhCCCChHHHHHHHHHHHHhCCCCCcch-hhHHHHHHHhcCCCHHHHHHHHccCCC----------------CChh
Q 007288 120 --KACKGMKSLSNAALVHGMAIKEGLEGSIYV-ENSLMDVYATCCISMDNARLVFNDMKW----------------KNDV 180 (609)
Q Consensus 120 --~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~~A~~~~~~~~~----------------~~~~ 180 (609)
-.+.+.|.++.|...|+...+.. |+..+ +|..+.++ -.| +.++..+.|..+.. |+..
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f-~i~-d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAF-AIG-DAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhhe-ecC-cHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 34678888888888888887754 45444 44444444 445 77887777776532 1111
Q ss_pred hHH-----HHHHHHHhcCC--hhhHHHHHHHHHHCCCCCCHhh-HHH--------------------HHHHHHccCCchh
Q 007288 181 SWT-----TLITGYAHSGN--GYGGLGVFKEMLLEGVEMNPYS-FSI--------------------AVRACASTGWVSF 232 (609)
Q Consensus 181 ~~~-----~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t-~~~--------------------ll~~~~~~g~~~~ 232 (609)
..| ..++.+-+.+. .++++-.-.+++.--+.||-.. |.. -...+.+.|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 122 22222222221 1222222122222222333111 000 0123566788888
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHh--cCCHHHHHHHHHhcCCCChhHHHHHH-----HHHHhCC-chHHHHHHHH
Q 007288 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCR--FDCLSDANQYFDEMTEKDLITWNTII-----AGYEKSG-SSECLNMFSK 304 (609)
Q Consensus 233 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~li-----~~~~~~~-~~~a~~~~~~ 304 (609)
|.+++.-..+..-..-...-+.|-..+.- -.++..|...-+.....|. ||.-. .....+| .++|.+.|++
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr--yn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR--YNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc--cCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 88888777766533333333333333222 3456666666555443221 22111 1122344 7778888877
Q ss_pred hHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcc
Q 007288 305 MKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLV 381 (609)
Q Consensus 305 m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~ 381 (609)
.....-.-....|+ +--.+...|++++|...|-.+... +..+..+..-+.+.|-...+...|.+++-.... .|+.
T Consensus 516 al~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ 593 (840)
T KOG2003|consen 516 ALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPA 593 (840)
T ss_pred HHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHH
Confidence 76542211122222 222345677888887777665432 123555666677777777888888887776653 4666
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHH-HH
Q 007288 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVD-LL 460 (609)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~ 460 (609)
....|...|-+.|+-..|.+.+-+-..- ++.|..|...|...|....-+++++.+|++..- +.|+..-|..++. ++
T Consensus 594 ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~ 670 (840)
T KOG2003|consen 594 ILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCF 670 (840)
T ss_pred HHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHH
Confidence 7777778888888888887766554443 555667777777778888888888888887633 5678777776664 44
Q ss_pred hhcCCHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhCCC
Q 007288 461 GRAGRVKEAYELIKSM--PFKPDESVWGPLLGACKEHRL 497 (609)
Q Consensus 461 ~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~ 497 (609)
.+.|++.+|+++++.. .+..|..+...|++.|...|-
T Consensus 671 rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 671 RRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 5678888888888777 455577777777777766653
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.56 E-value=1.7e-14 Score=137.55 Aligned_cols=221 Identities=16% Similarity=0.156 Sum_probs=112.9
Q ss_pred HHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCcchHHHHHHHHHhcCCHHH
Q 007288 321 IAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--RDLVTWTSMMIGYGAHGHGKE 398 (609)
Q Consensus 321 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~ 398 (609)
...+...++.+.|...++.+...+.. +...+..++.. ...+++++|.+++...-+ ++...+..++..+...+++++
T Consensus 51 a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 128 (280)
T PF13429_consen 51 ADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDE 128 (280)
T ss_dssp ---------------------------------------------------------------------H-HHHTT-HHH
T ss_pred cccccccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHH
Confidence 33445567777777777777765533 55566667766 688888888888876643 456667778888999999999
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 007288 399 AIELFDEMVKSG-VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM- 476 (609)
Q Consensus 399 A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 476 (609)
+.++++.+.... ..++...|..+...+.+.|+.++|++.+++..+... .|......++..+...|+.+++.++++..
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~ 207 (280)
T PF13429_consen 129 AEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLL 207 (280)
T ss_dssp HHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 999999987633 345667888888999999999999999999977552 25778889999999999999988888776
Q ss_pred -CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 477 -PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 477 -~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
....|...|..+..++...|+.++|...++++.+..|+|+.....++.++...|+.++|..++++..+
T Consensus 208 ~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 208 KAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 12345667888999999999999999999999999999999999999999999999999999877643
No 39
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=3.5e-09 Score=99.90 Aligned_cols=474 Identities=11% Similarity=0.083 Sum_probs=310.8
Q ss_pred cCChhHHHHhhccCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHHHHH
Q 007288 59 EGLIEEARTLFDEMPE---RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVH 135 (609)
Q Consensus 59 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 135 (609)
++++..|+.+|+.... .++..|-.-+..-.++.+++.|..+|++....=+..|.. |--.+-.=-..|++..|.++|
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHHHHH
Confidence 5667777888877653 556667777777778888888888888887642222322 222222233457888888888
Q ss_pred HHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccC--CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC
Q 007288 136 GMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM--KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMN 213 (609)
Q Consensus 136 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 213 (609)
+.-.+ .+|+...|.+.++.-.+.. .++.|..++++. ..|++.+|--..+.-.+.|+...|..+|....+. -.|
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRyk-eieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~ 239 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYK-EIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGD 239 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhh-HHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhh
Confidence 87655 5688888888888888887 888888888875 3578888888888888888888888888877663 112
Q ss_pred HhhHHHHHHHH----HccCCchhHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCCHHHHHHHH--------HhcCCC-
Q 007288 214 PYSFSIAVRAC----ASTGWVSFGKLIHAAVIKHGFGSN--LPVMNSILDMYCRFDCLSDANQYF--------DEMTEK- 278 (609)
Q Consensus 214 ~~t~~~ll~~~----~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~--------~~~~~~- 278 (609)
...-..++.++ ..+..++.|.-+|...+.. ++.+ ...|..+...=-+.|+-....+.. +.+...
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 33333333343 3456677777778777765 2333 345555555545555544443332 222222
Q ss_pred --ChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCH-------HhHHHHHHHH---HhhccHHHHHHHHHHHHHhCC
Q 007288 279 --DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNC-------FTFTSIIAAC---ATLAALSCGQQVHAGIVRRGL 345 (609)
Q Consensus 279 --~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~-------~t~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~ 345 (609)
|-.+|-..+..--..| .+...++|++.+.. ++|-. ..|.-+=-+| ....+.+.+.++++...+ -+
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lI 396 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LI 396 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hc
Confidence 4456766777777777 88888889888764 45522 1121111111 356788889999988887 35
Q ss_pred CCchhHHHHHHHHHH----hcCCHHHHHHHHHhcC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007288 346 DGNLALANALIDMYA----KCGNISDSQKIFSEMS--DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFM 419 (609)
Q Consensus 346 ~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 419 (609)
+....|+..+--+|+ ++.++..|.+++.... -|...+|...|..-.+.++++.+..++++.++-+ +-|..+|.
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~ 475 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWS 475 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHH
Confidence 556666665544443 6788899999998876 3667788888888888899999999999998853 33556888
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhc-CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHH----
Q 007288 420 AVLTACSHAGLVDEGLKYFKSMNDY-NVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDESVWGPLLGACK---- 493 (609)
Q Consensus 420 ~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~---- 493 (609)
.....=...|+.+.|..+|.-+... ........|.+.|+-=...|.++.|..+++++ ...+...+|-++...-.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~ 555 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASE 555 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccc
Confidence 8877778889999999999988542 23334556777777778899999999999887 44455667777664322
Q ss_pred -hCC-----------ChHHHHHHHHHHhc----cCCCC--cchHHHHHHHHHhcCChHHHHHHHHHH
Q 007288 494 -EHR-----------LPNLGKLAALRVLD----LKPNM--MGTYIILSNIYAAEGKWEEFAKFRKIM 542 (609)
Q Consensus 494 -~~~-----------~~~~a~~~~~~~~~----~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m 542 (609)
+.+ +...|..+|+++.. ..|.. ......+.+.=...|...+...+-.+|
T Consensus 556 ~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~m 622 (677)
T KOG1915|consen 556 GQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKM 622 (677)
T ss_pred cccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhc
Confidence 333 56678888888755 23311 112223333334456555555555555
No 40
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=1.4e-09 Score=102.41 Aligned_cols=459 Identities=11% Similarity=0.068 Sum_probs=332.8
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHH
Q 007288 76 DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMD 155 (609)
Q Consensus 76 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 155 (609)
+...|-.-...-..++++..|.++|++..... .-+...|.-.+..=.+...+..|..++++.+..-+..|. .|--.+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHH
Confidence 34445554555566788999999999998754 235555666667777888899999999998876544333 3444444
Q ss_pred HHHhcCCCHHHHHHHHccCC--CCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhH
Q 007288 156 VYATCCISMDNARLVFNDMK--WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG 233 (609)
Q Consensus 156 ~~~~~g~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 233 (609)
+--..| ++..|.++|++.. +|+..+|++.|+.-.+-+.++.|..+|+...- +.|+..+|.--.+-=.+.|++..+
T Consensus 150 mEE~Lg-Ni~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 150 MEEMLG-NIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHHhc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHH
Confidence 555567 9999999999875 48999999999999999999999999999976 469999998888888899999999
Q ss_pred HHHHHHHHHh-C-CCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC----C-ChhHHHHHHHH---HHhCC-chHHHH--
Q 007288 234 KLIHAAVIKH-G-FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE----K-DLITWNTIIAG---YEKSG-SSECLN-- 300 (609)
Q Consensus 234 ~~~~~~~~~~-g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~~~~~li~~---~~~~~-~~~a~~-- 300 (609)
..+|+.+++. | -..+...+.+....=.++..++.|..+|+-..+ . ....|...... |+... .++++-
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 9999988764 2 122344566666666677788888888765443 2 12333333332 32222 444442
Q ss_pred ---HHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCch------hHHHHHHHHH---HhcCCHHHH
Q 007288 301 ---MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL------ALANALIDMY---AKCGNISDS 368 (609)
Q Consensus 301 ---~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~---~~~g~~~~A 368 (609)
-|+.++..+ +-|-.++.-.+......|+.+...++|+.++..-.+... .+|--+--++ ....+.+.+
T Consensus 307 Rk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 307 RKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 233444432 346667777788888889999999999999876432221 2222222222 347889999
Q ss_pred HHHHHhcCC--C-CcchHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007288 369 QKIFSEMSD--R-DLVTWTSMM----IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441 (609)
Q Consensus 369 ~~~~~~~~~--~-~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 441 (609)
.++|+...+ | ..+||..+- .--.++.+...|.+++...+ |.-|-..+|...|..=.+.+.++.+..++++.
T Consensus 386 r~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 386 RQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999988775 2 345555443 33457789999999998876 57899999999999999999999999999999
Q ss_pred hhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC----HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcc
Q 007288 442 NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD----ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG 517 (609)
Q Consensus 442 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 517 (609)
.+.+. -+..+|......=...|+.+.|..+|+-.-.+|. ...|.+.|..-...|.++.|..+++++++..+ ...
T Consensus 464 le~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~-h~k 541 (677)
T KOG1915|consen 464 LEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ-HVK 541 (677)
T ss_pred HhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc-cch
Confidence 88774 3788888888888899999999999998844553 45666777777789999999999999999877 344
Q ss_pred hHHHHHHHHH-----hcC-----------ChHHHHHHHHHHHh
Q 007288 518 TYIILSNIYA-----AEG-----------KWEEFAKFRKIMRG 544 (609)
Q Consensus 518 ~~~~l~~~~~-----~~g-----------~~~~A~~~~~~m~~ 544 (609)
.|...+.--. +.| ....|..+|++...
T Consensus 542 vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 542 VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 6776665544 334 45677777777643
No 41
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=6.8e-11 Score=105.96 Aligned_cols=284 Identities=11% Similarity=0.088 Sum_probs=153.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC-Ch------hHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHH
Q 007288 251 VMNSILDMYCRFDCLSDANQYFDEMTEK-DL------ITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIA 322 (609)
Q Consensus 251 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~------~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 322 (609)
+.-+|.+.|.+.|..|.|+++-+.+.++ |. .....|..-|...| .+.|..+|..+.+.+. --......++.
T Consensus 71 ~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~ 149 (389)
T COG2956 71 AHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLN 149 (389)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHH
Confidence 3344444455555555555544444332 11 11223444455556 6666666665554321 12233445555
Q ss_pred HHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 007288 323 ACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402 (609)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 402 (609)
.|....+|++|..+-.++.+.+-.+... -+. ..|.-+...+....+.++|..+
T Consensus 150 IYQ~treW~KAId~A~~L~k~~~q~~~~---eIA------------------------qfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 150 IYQATREWEKAIDVAERLVKLGGQTYRV---EIA------------------------QFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred HHHHhhHHHHHHHHHHHHHHcCCccchh---HHH------------------------HHHHHHHHHHhhhhhHHHHHHH
Confidence 5555566666666555555544222110 011 1233344444455566666666
Q ss_pred HHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 007288 403 FDEMVKSGVRPDRI-VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP 480 (609)
Q Consensus 403 ~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 480 (609)
+.+..+. .|+.+ .-..+.+.....|+++.|.+.++...+.+..--..+...|..+|...|+.++.+.++.++ ...+
T Consensus 203 l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 203 LKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 6666653 23332 223344555666666666666666655554444556666666666667666666666655 3334
Q ss_pred CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHH---hcCChHHHHHHHHHHHhCCCcccCceeEEE
Q 007288 481 DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA---AEGKWEEFAKFRKIMRGMGSKKEVGMSWIE 557 (609)
Q Consensus 481 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 557 (609)
....-..+...-....-.+.|.....+-+...| +...+..++.... ..|.+.+....++.|....++..|.+....
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P-t~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~ 359 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRRKP-TMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQN 359 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhhCC-cHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecc
Confidence 444444444444445555666666666666666 3444444444433 335678888889999988888888887777
Q ss_pred eCCEEEEE
Q 007288 558 VRDKVCGF 565 (609)
Q Consensus 558 ~~~~~~~~ 565 (609)
++...|.|
T Consensus 360 CGF~a~~l 367 (389)
T COG2956 360 CGFTAHTL 367 (389)
T ss_pred cCCcceee
Confidence 76665555
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.49 E-value=7.1e-11 Score=118.00 Aligned_cols=245 Identities=11% Similarity=0.073 Sum_probs=151.4
Q ss_pred HhCC-chHHHHHHHHhHHCCCCCCHHhHH--HHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 007288 291 EKSG-SSECLNMFSKMKSERFSPNCFTFT--SIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISD 367 (609)
Q Consensus 291 ~~~~-~~~a~~~~~~m~~~~~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 367 (609)
.+.| .+.|...+.++.+. .|+...+. .....+...|+.+.|...++.+.+.. +-++.....+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 3444 55555555555442 33332222 22344555666666666666666554 3445566666666666677777
Q ss_pred HHHHHHhcCCCCc-----------chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 007288 368 SQKIFSEMSDRDL-----------VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436 (609)
Q Consensus 368 A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 436 (609)
|.+++..+.+... .+|..++.......+.+...++++.+-+. .+.+......+..++...|+.++|..
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 7766666653211 12233333333444455555555555332 24466677777888888888888888
Q ss_pred HHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHh-hHHHHHHHHHhCCChHHHHHHHHHHhccCCC
Q 007288 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDES-VWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
.+++..+. +++.... ++.+....++.+++++.+++. ...|+.. ....+...|.+.+++++|.+.|+++++..|+
T Consensus 285 ~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 285 IILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred HHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 88877652 3444322 233334558888888887776 4455444 4556668888888888888888888888884
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 515 MMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
...+..++.++.+.|+.++|.+++++-..
T Consensus 361 -~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 361 -AYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56677888888888888888888876644
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.48 E-value=9.3e-11 Score=117.13 Aligned_cols=284 Identities=12% Similarity=0.042 Sum_probs=161.0
Q ss_pred cCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHH--HHHHHHHhcCCHHHHH
Q 007288 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMN--SILDMYCRFDCLSDAN 269 (609)
Q Consensus 192 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~--~l~~~~~~~g~~~~A~ 269 (609)
.|+++.|.+.+....+.+-. ....|.....+....|+++.+...+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 35666666555544332111 1112222233335556666666666665543 33332221 2244555556666665
Q ss_pred HHHHhcCCC---ChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Q 007288 270 QYFDEMTEK---DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345 (609)
Q Consensus 270 ~~~~~~~~~---~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 345 (609)
..++++.+. +......+...|.+.| +++|.+++..+.+.+..++. .+..+-
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~------------------------ 228 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE------------------------ 228 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH------------------------
Confidence 555554431 2333444444444444 44444444444443322111 110000
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007288 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422 (609)
Q Consensus 346 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 422 (609)
...|..++.......+.+...++++.+.+ .++.....+...+...|+.++|.+++++..+. .|+.... ++
T Consensus 229 ---~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l 301 (398)
T PRK10747 229 ---QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LL 301 (398)
T ss_pred ---HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HH
Confidence 01222233333334455566666666652 35667777778888888888888888888773 4444222 23
Q ss_pred HHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhCCChHHH
Q 007288 423 TACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDESVWGPLLGACKEHRLPNLG 501 (609)
Q Consensus 423 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a 501 (609)
.+....++.+++.+..+...+.. +-|...+..+...+.+.|++++|.+.|++. ...|+..++..+..++.+.|+.++|
T Consensus 302 ~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A 380 (398)
T PRK10747 302 IPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEA 380 (398)
T ss_pred HhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 33445588888888888886543 335666778888888888888888888887 6678888888888888888888888
Q ss_pred HHHHHHHhcc
Q 007288 502 KLAALRVLDL 511 (609)
Q Consensus 502 ~~~~~~~~~~ 511 (609)
.+++++.+.+
T Consensus 381 ~~~~~~~l~~ 390 (398)
T PRK10747 381 AAMRRDGLML 390 (398)
T ss_pred HHHHHHHHhh
Confidence 8888887664
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=5.4e-12 Score=123.81 Aligned_cols=200 Identities=13% Similarity=0.038 Sum_probs=149.9
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 007288 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDR---DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR-IVFMAV 421 (609)
Q Consensus 346 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l 421 (609)
+..+.+|.++.++|.-.++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+. +.|.. ..|-.+
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGl 495 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWYGL 495 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhh
Confidence 445677788888888888888888888887753 446777777777788888888888887764 33433 366667
Q ss_pred HHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChH
Q 007288 422 LTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPN 499 (609)
Q Consensus 422 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 499 (609)
...|.+.++++.|.-.|+++.+.+.. +......+...+.+.|+.++|+++++++ ...| |+..--.-...+...++++
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~ 574 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYV 574 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchH
Confidence 77788888888888888888775532 5556667777888888888888888887 3333 3444444556677778888
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 007288 500 LGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSK 548 (609)
Q Consensus 500 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 548 (609)
+|+..++++.++-|++...|..++..|-+.|+.+.|+.-|--+.+..++
T Consensus 575 eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 575 EALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 8888888888888888888888888888888888888888887775543
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=4.4e-10 Score=105.62 Aligned_cols=359 Identities=12% Similarity=0.072 Sum_probs=247.3
Q ss_pred HHHHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhH--HHHHHHHHccCCchh
Q 007288 155 DVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSF--SIAVRACASTGWVSF 232 (609)
Q Consensus 155 ~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~g~~~~ 232 (609)
-.+-+.| ....|+..|......-+..|.+.+....-..+.+.+..+ .. |...|..-+ -.+..++-...+.++
T Consensus 172 vv~k~~~-~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l----~~-~l~~~~h~M~~~F~~~a~~el~q~~e 245 (559)
T KOG1155|consen 172 VVLKELG-LLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSIL----VV-GLPSDMHWMKKFFLKKAYQELHQHEE 245 (559)
T ss_pred HHHHhhc-hHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHH----Hh-cCcccchHHHHHHHHHHHHHHHHHHH
Confidence 3344555 778888888777665555566555444333333332222 21 122121111 123445555667788
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHhCC--chHHHHHHHH
Q 007288 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK------DLITWNTIIAGYEKSG--SSECLNMFSK 304 (609)
Q Consensus 233 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~--~~~a~~~~~~ 304 (609)
+.+-.+.....|++.+...-+....+.-...++++|+.+|+++.+. |..+|+.++-.-.... .--|..++.-
T Consensus 246 ~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~i 325 (559)
T KOG1155|consen 246 ALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI 325 (559)
T ss_pred HHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHh
Confidence 8888888888888877777777777778888999999999998764 4456665554332221 1222222221
Q ss_pred hHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcc
Q 007288 305 MKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLV 381 (609)
Q Consensus 305 m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~ 381 (609)
... -+.|...+.+-|+-.++.++|...|++..+.+ +.....++.+.+-|....+...|...++...+ .|-.
T Consensus 326 ---dKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR 399 (559)
T KOG1155|consen 326 ---DKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR 399 (559)
T ss_pred ---ccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH
Confidence 112 33466677788888899999999999998876 44567788888899999999999999998875 4667
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHH
Q 007288 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP-DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLL 460 (609)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 460 (609)
.|..|.++|.-.+...=|+-.|++..+. +| |...|..|..+|.+.++.++|+..|......| ..+...+..|.+.|
T Consensus 400 AWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLy 476 (559)
T KOG1155|consen 400 AWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLY 476 (559)
T ss_pred HHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHH
Confidence 8889999999999999999999998884 55 55689999999999999999999999987766 34668888899999
Q ss_pred hhcCCHHHHHHHHHhC-------C-CCCCHh-hHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 007288 461 GRAGRVKEAYELIKSM-------P-FKPDES-VWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK 531 (609)
Q Consensus 461 ~~~g~~~~A~~~~~~~-------~-~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 531 (609)
-+.++.++|...|++. + ..|... ...-|..-+.+.+++++|..........++ .
T Consensus 477 e~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~-----------------e 539 (559)
T KOG1155|consen 477 EELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET-----------------E 539 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc-----------------h
Confidence 9999999998888765 2 222121 122233557788888888776666655543 3
Q ss_pred hHHHHHHHHHHHhC
Q 007288 532 WEEFAKFRKIMRGM 545 (609)
Q Consensus 532 ~~~A~~~~~~m~~~ 545 (609)
.++|..+++++++.
T Consensus 540 ~eeak~LlReir~~ 553 (559)
T KOG1155|consen 540 CEEAKALLREIRKI 553 (559)
T ss_pred HHHHHHHHHHHHHh
Confidence 57778888777653
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=2e-11 Score=119.83 Aligned_cols=247 Identities=10% Similarity=0.099 Sum_probs=192.1
Q ss_pred chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHHHHHHH
Q 007288 295 SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL--DGNLALANALIDMYAKCGNISDSQKIF 372 (609)
Q Consensus 295 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 372 (609)
..+|+..|.+.... +.-+......+..+|...+++++++.+|+.+.+... -.+..+|.+.+--+-+.=.+..--+-+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 58889999884443 333446667788899999999999999999887531 235566766654333222221111112
Q ss_pred HhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChh
Q 007288 373 SEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP-DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE 451 (609)
Q Consensus 373 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 451 (609)
-......+.+|.++..+|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+.......+ +-.
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYn 490 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYN 490 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhH
Confidence 222234678999999999999999999999999998 566 5679998888899999999999999988553211 233
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-hhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 007288 452 IYGCVVDLLGRAGRVKEAYELIKSM-PFKPDE-SVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 529 (609)
.|-.|.-.|.+.++++.|.-.|+++ .+.|.. +....+...+.+.|+.++|+.+++++..++|.|+..-...+..+...
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~ 570 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSL 570 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhh
Confidence 4445778899999999999999988 788854 45555667799999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhC
Q 007288 530 GKWEEFAKFRKIMRGM 545 (609)
Q Consensus 530 g~~~~A~~~~~~m~~~ 545 (609)
+++++|.+.++++++-
T Consensus 571 ~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 571 GRYVEALQELEELKEL 586 (638)
T ss_pred cchHHHHHHHHHHHHh
Confidence 9999999999999873
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.44 E-value=2.6e-10 Score=114.61 Aligned_cols=283 Identities=12% Similarity=0.015 Sum_probs=158.1
Q ss_pred cCChhhHHHHHHHHHHCCCCCCH-hhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 007288 192 SGNGYGGLGVFKEMLLEGVEMNP-YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQ 270 (609)
Q Consensus 192 ~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 270 (609)
.|+++.|.+.+.+..+. .|+. ..+-....+....|+.+.+.+.+....+..-.+...+.......+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 46666666666555443 2332 22233344455556666666666665543211111222333555555566655555
Q ss_pred HHHhcCCCChhHHHHHHHHHHhCCchHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchh
Q 007288 271 YFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350 (609)
Q Consensus 271 ~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 350 (609)
.++.+.+ .. +-+...+..+...+...|+++.+...+..+.+.+..+...
T Consensus 175 ~l~~l~~------------------------------~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~ 223 (409)
T TIGR00540 175 GVDKLLE------------------------------MA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEE 223 (409)
T ss_pred HHHHHHH------------------------------hC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHH
Confidence 5555443 21 1122233344444444444444444444444443222111
Q ss_pred HH-------HHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--H
Q 007288 351 LA-------NALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIV--F 418 (609)
Q Consensus 351 ~~-------~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~ 418 (609)
.. ..++..-......+.....++...+ .+...+..+...+...|+.++|.+++++..+. .||... +
T Consensus 224 ~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~ 301 (409)
T TIGR00540 224 FADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISL 301 (409)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchh
Confidence 11 1111111112223444445555543 36677777888888888888888888888875 344331 1
Q ss_pred -HHHHHHHhccCCHHHHHHHHHHhhhcCCCCCh--hHHHHHHHHHhhcCCHHHHHHHHHh---CCCCCCHhhHHHHHHHH
Q 007288 419 -MAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK--EIYGCVVDLLGRAGRVKEAYELIKS---MPFKPDESVWGPLLGAC 492 (609)
Q Consensus 419 -~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~p~~~~~~~l~~~~ 492 (609)
....-.....++.+.+.+.++...+.. +-|. ....++...+.+.|++++|.+.|+. ....|+...+..+...+
T Consensus 302 ~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll 380 (409)
T TIGR00540 302 PLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAF 380 (409)
T ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHH
Confidence 111122334577788888887775432 2233 5666888888899999999998883 25678888888888888
Q ss_pred HhCCChHHHHHHHHHHhc
Q 007288 493 KEHRLPNLGKLAALRVLD 510 (609)
Q Consensus 493 ~~~~~~~~a~~~~~~~~~ 510 (609)
.+.|+.++|.+++++.+.
T Consensus 381 ~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 381 DQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999988888755
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.42 E-value=9.2e-10 Score=110.67 Aligned_cols=279 Identities=10% Similarity=0.023 Sum_probs=188.0
Q ss_pred cCCHHHHHHHHHhcCCC--C-hhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHH--hHHHHHHHHHhhccHHHHHH
Q 007288 262 FDCLSDANQYFDEMTEK--D-LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCF--TFTSIIAACATLAALSCGQQ 335 (609)
Q Consensus 262 ~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~~~~~~a~~ 335 (609)
.|+++.|.+.+.+..+. + ...+-....+..+.| .+.|.+.+.+..+. .|+.. ........+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 45555555555444321 1 112222233444445 56666666665543 24432 33334677788999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcchHH----HHHHHHHhcCCHHHHHHHHHHHHH
Q 007288 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR---DLVTWT----SMMIGYGAHGHGKEAIELFDEMVK 408 (609)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~ 408 (609)
.++.+.+.. +-+..+...+..++...|++++|.+.+..+.+. +...+. ....+....+..+++.+.+..+.+
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999886 556678899999999999999999999998853 222232 111222333344444556666665
Q ss_pred CCC---CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHH-HHHHHHHhhcCCHHHHHHHHHhC-CCCCCHh
Q 007288 409 SGV---RPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIY-GCVVDLLGRAGRVKEAYELIKSM-PFKPDES 483 (609)
Q Consensus 409 ~g~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 483 (609)
... +.+...+..+...+...|+.++|.+.+++..+.........+ ....-.....++.+.+.+.+++. ...|+..
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~ 333 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKP 333 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCCh
Confidence 321 137788888999999999999999999999764432221111 11122223457888888888776 4455544
Q ss_pred ---hHHHHHHHHHhCCChHHHHHHHH--HHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 484 ---VWGPLLGACKEHRLPNLGKLAAL--RVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 484 ---~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
...++...|.+.|++++|.+.++ ...+..|+ ...+..++.++.+.|+.++|.+++++-..
T Consensus 334 ~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~-~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 334 KCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD-ANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55678899999999999999999 57778884 55678999999999999999999998654
No 49
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.42 E-value=7.7e-12 Score=125.92 Aligned_cols=267 Identities=15% Similarity=0.152 Sum_probs=202.9
Q ss_pred HHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 007288 300 NMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD 379 (609)
Q Consensus 300 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 379 (609)
.++-.+...|+.|+..||..+|.-||..|+.+.|. +|..|.-...+.+..+++.++.+....++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45677888999999999999999999999999999 9999999999999999999999999999887765 788
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh-hhcCCCCChhHHHHHHH
Q 007288 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVD 458 (609)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~ 458 (609)
..+|..|..+|..+||... ++..++ -...+...+...|.-..-..++..+ -..+.-||... .+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHH
Confidence 8999999999999999876 222222 2233455566667666666666655 33445555543 455
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCC-ChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHH
Q 007288 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR-LPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAK 537 (609)
Q Consensus 459 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 537 (609)
...-.|.++.+++++..+|.....-+...+++-+.... .+++-..+.+...+ .| ++.+|..+...-..+|+.+.|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~-~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-AP-TSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHhcCchhhHHH
Confidence 56677889999999998864322222222354444333 44555555555555 66 78999999999999999999999
Q ss_pred HHHHHHhCCCcccCceeEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHcCcccCcccccccCC
Q 007288 538 FRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606 (609)
Q Consensus 538 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~ 606 (609)
++..|+++|+.-++++.|..+ .|.. . ...++.+..-|++.|+.||.+++..||.
T Consensus 226 ll~emke~gfpir~HyFwpLl--------~g~~---~----~q~~e~vlrgmqe~gv~p~seT~adyvi 279 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLL--------LGIN---A----AQVFEFVLRGMQEKGVQPGSETQADYVI 279 (1088)
T ss_pred HHHHHHHcCCCcccccchhhh--------hcCc---c----chHHHHHHHHHHHhcCCCCcchhHHHHH
Confidence 999999999999999999865 2211 1 2234678999999999999999988875
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.41 E-value=2.1e-12 Score=123.16 Aligned_cols=252 Identities=14% Similarity=0.120 Sum_probs=68.2
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHH-HHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 007288 186 ITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFS-IAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264 (609)
Q Consensus 186 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 264 (609)
...+.+.|++++|++++++......+|+...|. .+...+...++.+.|.+.++.+...+ +-+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 445556666666666665444332223333333 23334445666666666666666554 2244455555555 56666
Q ss_pred HHHHHHHHHhcCC--CChhHHHHHHHHHHhCC-chHHHHHHHHhHHCC-CCCCHHhHHHHHHHHHhhccHHHHHHHHHHH
Q 007288 265 LSDANQYFDEMTE--KDLITWNTIIAGYEKSG-SSECLNMFSKMKSER-FSPNCFTFTSIIAACATLAALSCGQQVHAGI 340 (609)
Q Consensus 265 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 340 (609)
+++|.+++...-+ ++...+..++..+.+.+ ++++..+++...... .+.+...|..+...+.+.|+.++|...+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666554422 23344444555555555 555555555544321 2334444555555555666666666666666
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007288 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS---DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIV 417 (609)
Q Consensus 341 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 417 (609)
.+.. +.|..+.+.++..+...|+.+++..++.... ..|...+..+..+|...|+.++|+..|++..+.. +.|...
T Consensus 173 l~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~ 250 (280)
T PF13429_consen 173 LELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLW 250 (280)
T ss_dssp HHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHH
T ss_pred HHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccccc
Confidence 5553 2234455555555555565555444444433 2344455555555556666666666666555531 224445
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHh
Q 007288 418 FMAVLTACSHAGLVDEGLKYFKSM 441 (609)
Q Consensus 418 ~~~ll~~~~~~~~~~~a~~~~~~~ 441 (609)
...+..++...|+.++|.++.+++
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccc
Confidence 555555555666666665555544
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.34 E-value=5.2e-09 Score=97.09 Aligned_cols=283 Identities=12% Similarity=0.074 Sum_probs=151.9
Q ss_pred cCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 007288 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQY 271 (609)
Q Consensus 192 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 271 (609)
.|++..|.++..+-.+.+-. ....|.....+.-..|+.+.+..++.++.+..-.++..++-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 46666776666665554332 23344455555566666666666666666653345555556666666666666666655
Q ss_pred HHhcCC---CChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC
Q 007288 272 FDEMTE---KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347 (609)
Q Consensus 272 ~~~~~~---~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 347 (609)
++++.+ .+.........+|.+.| +.....++.+|.+.|+-.|...-. .
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~----------------------------l 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR----------------------------L 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------H
Confidence 554432 34455555555555555 555555555555555433322110 0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007288 348 NLALANALIDMYAKCGNISDSQKIFSEMS---DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTA 424 (609)
Q Consensus 348 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 424 (609)
...+++.+++-....+..+.-...|+... +.++..-.+++.-+.+.|+.++|.++..+..+++..|+. ...-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHh
Confidence 11233334443333344444444555554 234555555666666777777777777777666655551 11123
Q ss_pred HhccCCHHHHHHHHHHh-hhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhCCChHHHH
Q 007288 425 CSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDESVWGPLLGACKEHRLPNLGK 502 (609)
Q Consensus 425 ~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~ 502 (609)
+.+.++...-++..+.- ...+- ++..+.+|...|.+.+.|.+|.+.|+.. +..|+..+|+-+..++.+.|+..+|.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 44555555555555544 22222 3345555666666666666666666544 45556666666666666666666666
Q ss_pred HHHHHHh
Q 007288 503 LAALRVL 509 (609)
Q Consensus 503 ~~~~~~~ 509 (609)
+..++.+
T Consensus 382 ~~r~e~L 388 (400)
T COG3071 382 QVRREAL 388 (400)
T ss_pred HHHHHHH
Confidence 5555554
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=9.1e-09 Score=99.49 Aligned_cols=476 Identities=12% Similarity=0.017 Sum_probs=273.3
Q ss_pred CCCChhHHhHHHHHHHccCChhHHHHhhccCC--CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHH
Q 007288 42 PKGPSILATNLIKSYFDEGLIEEARTLFDEMP--ERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119 (609)
Q Consensus 42 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 119 (609)
.+-+..-+..+++-+..+.++.-|.-+-+++- ..|+..--.+.+.+.-.|++.+|..+...-.-. ..|..+.....
T Consensus 12 d~~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~ 89 (611)
T KOG1173|consen 12 DELSLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAA 89 (611)
T ss_pred ccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHH
Confidence 34455556666666666666766666665553 234444556667777777777777766554322 23556666666
Q ss_pred HHhhCCCChHHHHHHHHHH----HHhC---------CCCCcch-----------hhHHHHHHHhcCCCHHHHHHHHccCC
Q 007288 120 KACKGMKSLSNAALVHGMA----IKEG---------LEGSIYV-----------ENSLMDVYATCCISMDNARLVFNDMK 175 (609)
Q Consensus 120 ~~~~~~~~~~~a~~~~~~~----~~~~---------~~~~~~~-----------~~~ll~~~~~~g~~~~~A~~~~~~~~ 175 (609)
.++.+..++++|..++... ..-. +.++..- +-.--..|.... +.++|...|.+..
T Consensus 90 ~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~-n~~~ar~~Y~~Al 168 (611)
T KOG1173|consen 90 KCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALD-NREEARDKYKEAL 168 (611)
T ss_pred HHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhc-cHHHHHHHHHHHH
Confidence 6677777777777666621 1000 0000000 000011122222 4455555554444
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCC----CCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhH
Q 007288 176 WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGV----EMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251 (609)
Q Consensus 176 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~----~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~ 251 (609)
..|+..|.++...-.. ..-.+.+.++.+..... +-+......+.........-+.....-.+..-.+..-+..+
T Consensus 169 ~~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dl 246 (611)
T KOG1173|consen 169 LADAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDL 246 (611)
T ss_pred hcchhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHH
Confidence 4444444333222111 11112122222221100 11111111111111000000000000000111233445556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhh
Q 007288 252 MNSILDMYCRFDCLSDANQYFDEMTEKD---LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATL 327 (609)
Q Consensus 252 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 327 (609)
.....+-+...+++.+..++++.+.+.+ ...+-.-|.++...| ..+-..+=.+|.+. .+-...+|.++.--|...
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHh
Confidence 6666777778888888888888887643 334555566777777 66666666677664 344567888888888888
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHH
Q 007288 328 AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFD 404 (609)
Q Consensus 328 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 404 (609)
|+..+|.+.|.+....+ +.-...|-.+...|.-.|.-++|...+....+ .....+--+..-|.+.++.+.|.+.|.
T Consensus 326 ~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred cCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 88888988888776543 12234566777888888888888877766553 111222224456777888888988888
Q ss_pred HHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhc--CCC----CChhHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 007288 405 EMVKSGVRPDR-IVFMAVLTACSHAGLVDEGLKYFKSMNDY--NVN----PNKEIYGCVVDLLGRAGRVKEAYELIKSM- 476 (609)
Q Consensus 405 ~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 476 (609)
+... +-|+. ...+-+.-..-..+.+.+|..+|+..... .+. .-..+++.|..+|.+.+.+++|+..+++.
T Consensus 405 ~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL 482 (611)
T KOG1173|consen 405 QALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL 482 (611)
T ss_pred HHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 8776 45544 45555555556678888888888877411 111 13456778888888999999998888877
Q ss_pred CC-CCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007288 477 PF-KPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526 (609)
Q Consensus 477 ~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 526 (609)
.. ..+..++.++.-.+...|+++.|.+.|.+++.+.|++..+-..|..+.
T Consensus 483 ~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 483 LLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 22 336777888888888889999999999999999997765555555443
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.32 E-value=5.5e-09 Score=93.98 Aligned_cols=285 Identities=13% Similarity=0.102 Sum_probs=186.4
Q ss_pred cCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCC---ChhHHHHHHHHHHhcCCHHHH
Q 007288 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGS---NLPVMNSILDMYCRFDCLSDA 268 (609)
Q Consensus 192 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~---~~~~~~~l~~~~~~~g~~~~A 268 (609)
+.+.++|.++|-+|.+.. +-+..+-.+|.+.|.+.|.+|.|.++++.+.++.--+ -..+.-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 568899999999998742 1133344577788899999999999999988752111 123456677889999999999
Q ss_pred HHHHHhcCCCC---hhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhC
Q 007288 269 NQYFDEMTEKD---LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344 (609)
Q Consensus 269 ~~~~~~~~~~~---~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 344 (609)
+.+|..+.+.+ ......|+..|.... |++|+++-.++...+-.+... -|.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~----eIA---------------------- 180 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV----EIA---------------------- 180 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh----HHH----------------------
Confidence 99999998743 345677889999999 999999999988765444322 111
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007288 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDR---DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAV 421 (609)
Q Consensus 345 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 421 (609)
..|.-|...+.-..+.+.|..++.+..+. .+..--.+...+...|++..|++.++...+.+..--..+...|
T Consensus 181 -----qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 181 -----QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred -----HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 11223333344445555555555555432 2233334556677788888888888888876544444577778
Q ss_pred HHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHH-HHhCCCCCCHhhHHHHHHHHHhC---CC
Q 007288 422 LTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL-IKSMPFKPDESVWGPLLGACKEH---RL 497 (609)
Q Consensus 422 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~---~~ 497 (609)
..+|.+.|+.++....+..+.+....++ .-..+.+.-....-.+.|... .+.+.-+|+...+..|+...... |.
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~ 333 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMETNTGAD--AELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGR 333 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccc
Confidence 8888888888888888888865443333 333344433334444555444 44556678888888888765433 33
Q ss_pred hHHHHHHHHHHhc
Q 007288 498 PNLGKLAALRVLD 510 (609)
Q Consensus 498 ~~~a~~~~~~~~~ 510 (609)
..+....++.++.
T Consensus 334 ~k~sL~~lr~mvg 346 (389)
T COG2956 334 AKESLDLLRDMVG 346 (389)
T ss_pred hhhhHHHHHHHHH
Confidence 4444555555543
No 54
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=1e-08 Score=97.33 Aligned_cols=402 Identities=10% Similarity=-0.006 Sum_probs=253.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-cchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHH
Q 007288 80 WTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN-AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA 158 (609)
Q Consensus 80 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 158 (609)
+-...+-|.++|++++|++.|.+.++ ..|| +..|.....+|...|+|+++.+--...++.++. -+-.+....+++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHH
Confidence 44556677888888999998888887 4677 667777777788888888887776666664432 1234445555666
Q ss_pred hcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHHHHH--------HHH-C--CCCCCHhhHHHHHHHHHcc
Q 007288 159 TCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKE--------MLL-E--GVEMNPYSFSIAVRACAST 227 (609)
Q Consensus 159 ~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~--------m~~-~--g~~p~~~t~~~ll~~~~~~ 227 (609)
..| ++++|+.= .+-.+++.+|....-..-+.+++++ -.. . .+-|+.....+....+...
T Consensus 195 ~lg-~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 195 QLG-KFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred hhc-cHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 666 66666431 2223333343333333333333322 111 1 2345555555555444321
Q ss_pred C------CchhHHHHHHHHHHhCCCCChhHHHHHHHHHHh-cCCHHHHHHHHHhcC-------CC---ChhHHHHHHHH-
Q 007288 228 G------WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR-FDCLSDANQYFDEMT-------EK---DLITWNTIIAG- 289 (609)
Q Consensus 228 g------~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~-------~~---~~~~~~~li~~- 289 (609)
- ..+++....... +=..+.. ...+..|...+.+-. .. |... .-+..+
T Consensus 265 ~~~~~~~~~~ksDa~l~~~--------------l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~l-e~~A~al 329 (606)
T KOG0547|consen 265 PKPLFDNKSDKSDAALAEA--------------LEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAEL-EYMAEAL 329 (606)
T ss_pred ccccccCCCccchhhHHHH--------------HHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhH-HHHHHHH
Confidence 1 011111111110 0000100 011222222222211 11 1111 112222
Q ss_pred ------HHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 007288 290 ------YEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362 (609)
Q Consensus 290 ------~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 362 (609)
+.-.| ...|...|+..+.....++. .|.-+...+...++.++....|....+.+ +.++.+|..-.+++.-.
T Consensus 330 ~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL 407 (606)
T KOG0547|consen 330 LLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLL 407 (606)
T ss_pred HHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHH
Confidence 23344 67888889988876433333 27778888999999999999999998876 55677787788888888
Q ss_pred CCHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007288 363 GNISDSQKIFSEMSDR---DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439 (609)
Q Consensus 363 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 439 (609)
+++++|..=|++...- ++..|-.+..+.-+.+++++++..|++.+++ ++--...|+.....+...++++.|.+.|+
T Consensus 408 ~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 408 QQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 9999999999998853 4556666766777889999999999999986 55556799999999999999999999999
Q ss_pred HhhhcCCC-----CC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhc
Q 007288 440 SMNDYNVN-----PN--KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLD 510 (609)
Q Consensus 440 ~~~~~~~~-----~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 510 (609)
..++.... .+ +.+-..++..- -.+++..|.+++++. .+.| ....+..|...-.++|+.++|+++|++...
T Consensus 487 ~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 487 KAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 98653322 11 12222222222 338999999999988 5555 456788899999999999999999999877
Q ss_pred cCC
Q 007288 511 LKP 513 (609)
Q Consensus 511 ~~p 513 (609)
+-.
T Consensus 566 lAr 568 (606)
T KOG0547|consen 566 LAR 568 (606)
T ss_pred HHH
Confidence 543
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.31 E-value=4.4e-09 Score=97.57 Aligned_cols=221 Identities=12% Similarity=0.092 Sum_probs=156.4
Q ss_pred HhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-----------cchH
Q 007288 315 FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD-----------LVTW 383 (609)
Q Consensus 315 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~ 383 (609)
..+.+........|+.+.|..-...+.+.+ +-++.+.....++|.+.|++.....++..+.+.. ..+|
T Consensus 154 ~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~ 232 (400)
T COG3071 154 AVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAW 232 (400)
T ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHH
Confidence 334444444555556666665555555544 3344555666666666666666666666666422 1367
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc
Q 007288 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463 (609)
Q Consensus 384 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 463 (609)
+.+++-....+..+.-...|+..-.+ .+-+...-.+++.-+...|+.++|.++..+..+.+..|+.. .+ -.+.+-
T Consensus 233 ~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~---~~-~~~l~~ 307 (400)
T COG3071 233 EGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC---RL-IPRLRP 307 (400)
T ss_pred HHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH---HH-HhhcCC
Confidence 77777776666666666677666543 45566677788888999999999999999998878776622 22 234455
Q ss_pred CCHHHHHHHHHh----CCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 007288 464 GRVKEAYELIKS----MPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFR 539 (609)
Q Consensus 464 g~~~~A~~~~~~----~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (609)
++.+.-++..++ .+..| ..+.+|...|.+++.+.+|...++.+++..| +...|..++.++.+.|+..+|.+.+
T Consensus 308 ~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r 384 (400)
T COG3071 308 GDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVR 384 (400)
T ss_pred CCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHH
Confidence 665554444433 35444 6788889999999999999999999999999 6899999999999999999999998
Q ss_pred HHHHh
Q 007288 540 KIMRG 544 (609)
Q Consensus 540 ~~m~~ 544 (609)
++..-
T Consensus 385 ~e~L~ 389 (400)
T COG3071 385 REALL 389 (400)
T ss_pred HHHHH
Confidence 88764
No 56
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=6.4e-08 Score=88.18 Aligned_cols=468 Identities=10% Similarity=0.033 Sum_probs=282.6
Q ss_pred HHHHHccCChhHHHHhhccCCCCC---cccHH-HHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCCh
Q 007288 53 IKSYFDEGLIEEARTLFDEMPERD---VVSWT-VMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSL 128 (609)
Q Consensus 53 i~~~~~~g~~~~A~~~~~~~~~~~---~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 128 (609)
++-+....++..|+.+++.-...+ ....+ .+.-.+.+.|++++|...|..+... -.|+...+..|..++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHH
Confidence 556667788999998887544211 11233 3444567889999999999988774 345666666666666667888
Q ss_pred HHHHHHHHHHHHhCCCCCcchhh-HHHHHHHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 007288 129 SNAALVHGMAIKEGLEGSIYVEN-SLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLL 207 (609)
Q Consensus 129 ~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 207 (609)
.+|..+-... |+....+ .|+....+.+ +-++-...-+.+... ...--+|.....-.-.+.+|+++|.....
T Consensus 108 ~eA~~~~~ka------~k~pL~~RLlfhlahkln-dEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 108 IEAKSIAEKA------PKTPLCIRLLFHLAHKLN-DEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHHHhhC------CCChHHHHHHHHHHHHhC-cHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8887765443 3333333 4445555555 655555544444332 22233444444445578899999999876
Q ss_pred CCCCCCHhhHHHHHHH-HHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHH
Q 007288 208 EGVEMNPYSFSIAVRA-CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286 (609)
Q Consensus 208 ~g~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 286 (609)
. .|+-...+.-+.. |.+..-++-+.+++.--.+. ++.+....|.......+.=.-..|..-...+...-...| ..
T Consensus 180 d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~-~f 255 (557)
T KOG3785|consen 180 D--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY-PF 255 (557)
T ss_pred c--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc-hh
Confidence 5 3455555554444 45777778888888776665 344455555555444443222222222222221111111 12
Q ss_pred HHHHHhCC------chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHH--
Q 007288 287 IAGYEKSG------SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDM-- 358 (609)
Q Consensus 287 i~~~~~~~------~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-- 358 (609)
+.-+++.+ -+.|++++-.+.+. .|. .-..++-.+.+.+++.+|..+.+++.. ..|...+...++.+
T Consensus 256 ~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aal 329 (557)
T KOG3785|consen 256 IEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAAL 329 (557)
T ss_pred HHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHh
Confidence 33333333 36677776665542 232 223455567788999998888776531 12222232323222
Q ss_pred ---HHhcCCHHHHHHHHHhcCC-----CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 007288 359 ---YAKCGNISDSQKIFSEMSD-----RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430 (609)
Q Consensus 359 ---~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 430 (609)
......+.-|.+.|+..-+ .++.--.++..++.-..++++++..++....- +.-|..---.+..+.+..|.
T Consensus 330 GQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgn 408 (557)
T KOG3785|consen 330 GQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGN 408 (557)
T ss_pred hhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcC
Confidence 1122235567777776653 23344566777777778899999888888775 33333333457788999999
Q ss_pred HHHHHHHHHHhhhcCCCCChhHHH-HHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHH-HHHHhCCChHHHHHHHHHH
Q 007288 431 VDEGLKYFKSMNDYNVNPNKEIYG-CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL-GACKEHRLPNLGKLAALRV 508 (609)
Q Consensus 431 ~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~ 508 (609)
+.+|.++|-......++ |..+|. .|..+|.++++++.|.+++-++.-..+..+...+| +-|.+.+.+=-|-..|..+
T Consensus 409 y~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~l 487 (557)
T KOG3785|consen 409 YVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDEL 487 (557)
T ss_pred hHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 99999999877554444 444554 56688999999999999998886544566666666 6688888888888888888
Q ss_pred hccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCcccC
Q 007288 509 LDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEV 551 (609)
Q Consensus 509 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 551 (609)
..++| ++..|. |+--....+|..+....-.+.|
T Consensus 488 E~lDP-~pEnWe---------GKRGACaG~f~~l~~~~~~~~p 520 (557)
T KOG3785|consen 488 EILDP-TPENWE---------GKRGACAGLFRQLANHKTDPIP 520 (557)
T ss_pred HccCC-CccccC---------CccchHHHHHHHHHcCCCCCCc
Confidence 88888 455443 3333344556666554333333
No 57
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.30 E-value=1.5e-09 Score=108.03 Aligned_cols=231 Identities=18% Similarity=0.199 Sum_probs=175.2
Q ss_pred HHhHHHHHHHHHhhccHHHHHHHHHHHHHh-----C-CCCchh-HHHHHHHHHHhcCCHHHHHHHHHhcCC-------C-
Q 007288 314 CFTFTSIIAACATLAALSCGQQVHAGIVRR-----G-LDGNLA-LANALIDMYAKCGNISDSQKIFSEMSD-------R- 378 (609)
Q Consensus 314 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~- 378 (609)
..+...+...|...|+++.|..+++...+. | ..|... ..+.+...|...+++.+|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346666888899999999999999877654 2 123332 334577888999999999999988762 1
Q ss_pred ---CcchHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCC-CHH-HHHHHHHHHhccCCHHHHHHHHHHhhh---cC
Q 007288 379 ---DLVTWTSMMIGYGAHGHGKEAIELFDEMVK-----SGVRP-DRI-VFMAVLTACSHAGLVDEGLKYFKSMND---YN 445 (609)
Q Consensus 379 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p-~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~ 445 (609)
-..+++.|..+|.+.|++++|...+++..+ .|..+ ... .++.+...|+..+++++|..+++...+ .-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 235788888899999999999888877654 12222 222 566777889999999999999987732 11
Q ss_pred CCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC-------C--CCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhc-
Q 007288 446 VNPN----KEIYGCVVDLLGRAGRVKEAYELIKSM-------P--FKP-DESVWGPLLGACKEHRLPNLGKLAALRVLD- 510 (609)
Q Consensus 446 ~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~--~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 510 (609)
+.++ ..+++.|...|...|++++|.++++++ . ..+ ....++.|..+|.+.+++++|..+|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 467899999999999999999999887 1 122 245677788889999999999999988765
Q ss_pred ---cCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 511 ---LKP---NMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 511 ---~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
..| +...+|..|+.+|.+.|++++|.++.+.+..
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 344 4466888999999999999999999988864
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.30 E-value=9.8e-10 Score=102.02 Aligned_cols=195 Identities=11% Similarity=0.061 Sum_probs=155.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007288 349 LALANALIDMYAKCGNISDSQKIFSEMSD--R-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTAC 425 (609)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 425 (609)
...+..+...+...|++++|...+++..+ | +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 45566677778888888888888887653 2 34567778888888999999999999888753 33456777788888
Q ss_pred hccCCHHHHHHHHHHhhhcCC-CCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHH
Q 007288 426 SHAGLVDEGLKYFKSMNDYNV-NPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGK 502 (609)
Q Consensus 426 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 502 (609)
...|++++|...++...+... ......+..+...+...|++++|...+++. ...| +...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 899999999999999865322 223456777888899999999999999887 3344 3567778888899999999999
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 503 LAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 503 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
..++++.+..|.++..+..++..+...|+.++|..+.+.+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999988888888888899999999999999999888765
No 59
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=5.8e-12 Score=83.99 Aligned_cols=50 Identities=24% Similarity=0.505 Sum_probs=46.7
Q ss_pred CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhC
Q 007288 75 RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124 (609)
Q Consensus 75 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 124 (609)
||+.+||++|.+|++.|++++|+++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999875
No 60
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=2e-07 Score=90.91 Aligned_cols=437 Identities=10% Similarity=0.056 Sum_probs=266.9
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhH--HHHHHH-
Q 007288 82 VMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENS--LMDVYA- 158 (609)
Q Consensus 82 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--ll~~~~- 158 (609)
+=+.-+..+|++++|.....++...+ +-|...+..-+-++.+.+.+++|..+.+. .+. ..+++. +=.+||
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHHHH
Confidence 34556678899999999999999865 33556677777888999999998754432 221 112222 244554
Q ss_pred -hcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-HhhHHHHHHHHHccCCchhHHHH
Q 007288 159 -TCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMN-PYSFSIAVRACASTGWVSFGKLI 236 (609)
Q Consensus 159 -~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~ 236 (609)
+.+ ..++|+..++.....+..+...-...+.+.|++++|+++|+.+.+.+..-- ...-..++.+-.. -.+
T Consensus 90 Yrln-k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~--- 161 (652)
T KOG2376|consen 90 YRLN-KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQV--- 161 (652)
T ss_pred HHcc-cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhH---
Confidence 556 899999999966666666777777889999999999999999988754311 1111122211111 011
Q ss_pred HHHHHHhCCCCChhHHH---HHHHHHHhcCCHHHHHHHHHhc--------CCCCh----------hHHHHHHHHHHhCC-
Q 007288 237 HAAVIKHGFGSNLPVMN---SILDMYCRFDCLSDANQYFDEM--------TEKDL----------ITWNTIIAGYEKSG- 294 (609)
Q Consensus 237 ~~~~~~~g~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~--------~~~~~----------~~~~~li~~~~~~~- 294 (609)
..+......| ..+|. .....+...|++.+|+++++.. .+.|. ..---|.-.+...|
T Consensus 162 -~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 162 -QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred -HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 1122222223 22332 2345677889999999999887 21111 11223445677788
Q ss_pred chHHHHHHHHhHHCCCCCCHHhHHHHHHH---HHhhcc-HH-HHHHHHH------------HHHHhCCCCchhHHHHHHH
Q 007288 295 SSECLNMFSKMKSERFSPNCFTFTSIIAA---CATLAA-LS-CGQQVHA------------GIVRRGLDGNLALANALID 357 (609)
Q Consensus 295 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~---~~~~~~-~~-~a~~~~~------------~~~~~~~~~~~~~~~~l~~ 357 (609)
..+|..+|...+... .+|........+- ...-.+ .+ .+...++ .+.... ......-+.++.
T Consensus 240 t~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q-k~~i~~N~~lL~ 317 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ-KQAIYRNNALLA 317 (652)
T ss_pred hHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 999999999988864 3454332222221 111111 11 0111111 111110 111111233444
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC-cchHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 007288 358 MYAKCGNISDSQKIFSEMSDRD-LVTWTSMMIGYG--AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434 (609)
Q Consensus 358 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 434 (609)
+| .+.-+.+.++-..+.... ...+.+++.... +...+.+|.+++...-+....-........+......|+++.|
T Consensus 318 l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 318 LF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred HH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Confidence 43 355566666666666422 344555554432 2235778888888776642222234555666778899999999
Q ss_pred HHHHH--------HhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCC-CHhhHHHHHHHHHhCCC
Q 007288 435 LKYFK--------SMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM--------PFKP-DESVWGPLLGACKEHRL 497 (609)
Q Consensus 435 ~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p-~~~~~~~l~~~~~~~~~ 497 (609)
.+++. .+.+.+..| .+...++..+.+.++.+.|.+++.+. ...+ -..++.-+...-.+.|+
T Consensus 396 ~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~ 473 (652)
T KOG2376|consen 396 LEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN 473 (652)
T ss_pred HHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence 99999 555555444 45556778888888877777776655 1111 12334444455667899
Q ss_pred hHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 007288 498 PNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIM 542 (609)
Q Consensus 498 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 542 (609)
.++|...++++++.+|++..+...++.+|++. +.+.|..+-+.+
T Consensus 474 ~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 474 EEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred hHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 99999999999999999999999999999987 677777775554
No 61
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=5.1e-08 Score=94.44 Aligned_cols=255 Identities=13% Similarity=0.035 Sum_probs=197.5
Q ss_pred HHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 007288 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGN 364 (609)
Q Consensus 286 li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 364 (609)
-..-+...+ +.+..++++...+.. ++....+..=|..+...|+..+-..+-..+++.- |....+|-++.--|...|+
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k 327 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGK 327 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcC
Confidence 334455556 888999998887752 3444455555667777777776666666676653 5567788888888888999
Q ss_pred HHHHHHHHHhcCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007288 365 ISDSQKIFSEMSDRD---LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441 (609)
Q Consensus 365 ~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 441 (609)
.++|.+.|.+...-| ...|-.+...|+-.|..+.|+..+...-+. ++-....+--+.--|...++.+-|.++|...
T Consensus 328 ~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A 406 (611)
T KOG1173|consen 328 YSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQA 406 (611)
T ss_pred cHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999999999887433 358999999999999999999999888763 1111122333445578899999999999988
Q ss_pred hhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC--------CCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccC
Q 007288 442 NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMP--------FKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLK 512 (609)
Q Consensus 442 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 512 (609)
.... +-|+.+++-+.-.....+.+.+|...|+..- ..+ -..+++.|..+|++.+.+++|+..+++++.+.
T Consensus 407 ~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 407 LAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS 485 (611)
T ss_pred HhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 6543 3467778888777778899999999987761 111 34567788899999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 513 PNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 513 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
|.+..++..++-.|...|+++.|+..|.+..-
T Consensus 486 ~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 486 PKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999999999999988764
No 62
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=8.4e-08 Score=89.26 Aligned_cols=268 Identities=10% Similarity=0.023 Sum_probs=172.5
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHH---HHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHH
Q 007288 246 GSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN---TIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSII 321 (609)
Q Consensus 246 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll 321 (609)
+-|+.....+.+++...|+.++|...|++...-|+.+.. .....+.+.| .+....+...+.... .-....|..-.
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 445555556666666666666666666655433222111 1111223344 444444444444321 11222232223
Q ss_pred HHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-CcchHHHHHHHHHhcCCHHH
Q 007288 322 AACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS--DR-DLVTWTSMMIGYGAHGHGKE 398 (609)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~ 398 (609)
...-...+++.|..+-.+.++.+ +.+...+-.-..++...|+.++|.-.|+... .| +...|..|+.+|...|.+.+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 33344566666766666665543 2233334444566677888888888888766 33 67889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH-HHHhc-cCCHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHh
Q 007288 399 AIELFDEMVKSGVRPDRIVFMAVL-TACSH-AGLVDEGLKYFKSMNDYNVNPN-KEIYGCVVDLLGRAGRVKEAYELIKS 475 (609)
Q Consensus 399 A~~~~~~m~~~g~~p~~~~~~~ll-~~~~~-~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 475 (609)
|.-+-+...+. +.-+..+...+. ..|.. ..--++|..+++...+. .|+ ....+.+...+...|..++++.++++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 88887776653 344555665553 33332 33457888888877553 344 45667788899999999999999988
Q ss_pred C-CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcch
Q 007288 476 M-PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518 (609)
Q Consensus 476 ~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 518 (609)
. ...||....+.|.+.+...+.+++|...|..++.++|++..+
T Consensus 464 ~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 464 HLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 7 667899999999999999999999999999999999976443
No 63
>PF13041 PPR_2: PPR repeat family
Probab=99.25 E-value=2.2e-11 Score=81.15 Aligned_cols=50 Identities=32% Similarity=0.646 Sum_probs=42.9
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 007288 378 RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH 427 (609)
Q Consensus 378 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 427 (609)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888888874
No 64
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.24 E-value=6.3e-07 Score=90.27 Aligned_cols=128 Identities=17% Similarity=0.156 Sum_probs=107.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHhC
Q 007288 418 FMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD-ESVWGPLLGACKEH 495 (609)
Q Consensus 418 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~ 495 (609)
|......+.+.+..++|...+.+..+.. +.....|......+...|++++|.+.|... .+.|+ +.+..++...+.+.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 4455566778888889988888885533 446677777778888999999999988776 66775 56778888999999
Q ss_pred CChHHHHH--HHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 496 RLPNLGKL--AALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 496 ~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
|+...|.. ++..+++++|.++..|..++..+.+.|+.++|.+.|+...+..
T Consensus 732 G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred CCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 99888888 9999999999999999999999999999999999999988753
No 65
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=3.2e-07 Score=83.73 Aligned_cols=445 Identities=10% Similarity=0.020 Sum_probs=262.4
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCC
Q 007288 84 IAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163 (609)
Q Consensus 84 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 163 (609)
+.-+....++..|+.+++.-...+-+-...+-.-+..++...|++++|...+..+.+ .-.++...+..|...+.-.| .
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~-~~~~~~el~vnLAcc~FyLg-~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN-KDDAPAELGVNLACCKFYLG-Q 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc-cCCCCcccchhHHHHHHHHH-H
Confidence 566677888999999888766443322222223344556788999999999988776 34556677777777777777 8
Q ss_pred HHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHh
Q 007288 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH 243 (609)
Q Consensus 164 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 243 (609)
+.+|..+-...++ +...-..|+....+.++-++-..+-+.+.+. ...-.+|....-..-.+++|..++..+...
T Consensus 107 Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 107 YIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888776643 2333344455555667766666555555432 112223333333444577888888887765
Q ss_pred CCCCChhHHHH-HHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHH
Q 007288 244 GFGSNLPVMNS-ILDMYCRFDCLSDANQYFDEMTE--K-DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFT 318 (609)
Q Consensus 244 g~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~ 318 (609)
+ |+-...|. +.-+|.+..-++-+.++++-..+ | +...-|.......+.- ...|.+-.+.+.+.+-.. |-
T Consensus 181 n--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~~ 254 (557)
T KOG3785|consen 181 N--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----YP 254 (557)
T ss_pred C--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----ch
Confidence 3 33333332 33456677666666666554432 2 3334444333333322 233333333333322110 11
Q ss_pred HHHHHHHh-----hccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 007288 319 SIIAACAT-----LAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393 (609)
Q Consensus 319 ~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 393 (609)
.+.-+++ -.+-+.|.+++--+.+. -|. .--.|+--|.+.+++.+|..+..++...++.-|-.-...++..
T Consensus 255 -f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aal 329 (557)
T KOG3785|consen 255 -FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAAL 329 (557)
T ss_pred -hHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHh
Confidence 1112222 12445566665544432 122 2233555688999999999999988754444443322333333
Q ss_pred CC-------HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCC
Q 007288 394 GH-------GKEAIELFDEMVKSGVRPDRI-VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465 (609)
Q Consensus 394 g~-------~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 465 (609)
|+ ..-|.+.|+-.-+++..-|.. --.++..++.-...+++.+.+++.....=...|...+| +..+++..|.
T Consensus 330 GQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgn 408 (557)
T KOG3785|consen 330 GQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGN 408 (557)
T ss_pred hhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcC
Confidence 33 333444444433333332221 11223333444456888888888887655555555555 7889999999
Q ss_pred HHHHHHHHHhCC--CCCCHhhHHHHH-HHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 007288 466 VKEAYELIKSMP--FKPDESVWGPLL-GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIM 542 (609)
Q Consensus 466 ~~~A~~~~~~~~--~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 542 (609)
+.+|.++|-++. .-.|..+|.+++ ++|.+.+..+.|..++-+...-. ........+++-|.+++.+=-|.+.|+.+
T Consensus 409 y~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~-e~fsLLqlIAn~CYk~~eFyyaaKAFd~l 487 (557)
T KOG3785|consen 409 YVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPS-ERFSLLQLIANDCYKANEFYYAAKAFDEL 487 (557)
T ss_pred hHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCch-hHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 999999998883 124667777776 78889999999987765432211 23455667889999999999999999999
Q ss_pred HhCCCcc
Q 007288 543 RGMGSKK 549 (609)
Q Consensus 543 ~~~~~~~ 549 (609)
...++.|
T Consensus 488 E~lDP~p 494 (557)
T KOG3785|consen 488 EILDPTP 494 (557)
T ss_pred HccCCCc
Confidence 8765543
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=1.1e-09 Score=98.33 Aligned_cols=226 Identities=12% Similarity=0.025 Sum_probs=171.7
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCcch-HHHHHHHHHhcC
Q 007288 318 TSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--RDLVT-WTSMMIGYGAHG 394 (609)
Q Consensus 318 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~g 394 (609)
..+..+|.+.|.+..|+..++...+. .|-+.+|..|-.+|.+..+.+.|+.+|.+-.+ |..+| ...+...+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 44556666677777777766665554 34455566677777777777777777777664 33333 334555666778
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHH
Q 007288 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474 (609)
Q Consensus 395 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 474 (609)
+.++|.++|+...+.. ..+......+...|.-.++++-|+.+++++...|+. +...|+.+.-+|.-.++++-++.-|.
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 8888888888887752 345556666777777788888888888888888865 77888888888888888888887777
Q ss_pred hC---CCCC--CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 475 SM---PFKP--DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 475 ~~---~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
+. -.+| -..+|..|.......|++..|.+.|+.++..+|++...++.|+-.-.+.|+.++|..+++......+
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 66 1223 3567888888888999999999999999999999999999999999999999999999999887544
No 67
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.18 E-value=2.3e-06 Score=84.47 Aligned_cols=425 Identities=12% Similarity=0.085 Sum_probs=268.8
Q ss_pred chHHHHHHHhhCCCChHHHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHh
Q 007288 113 FTLSSVLKACKGMKSLSNAALVHGMAIKE-GLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAH 191 (609)
Q Consensus 113 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 191 (609)
..|...+..+...+++...+..|+..+.. -+.....+|...+......+ -++-+..++++..+-++..-+-.|..+++
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~-lPets~rvyrRYLk~~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHG-LPETSIRVYRRYLKVAPEAREEYIEYLAK 181 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCC-ChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 45666666777888888888888877665 33445567888888877777 88888888888877777778888888888
Q ss_pred cCChhhHHHHHHHHHHCC------CCCCHhhHHHHHHHHHccCCch---hHHHHHHHHHHhCCCCC--hhHHHHHHHHHH
Q 007288 192 SGNGYGGLGVFKEMLLEG------VEMNPYSFSIAVRACASTGWVS---FGKLIHAAVIKHGFGSN--LPVMNSILDMYC 260 (609)
Q Consensus 192 ~g~~~~a~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~g~~~---~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~ 260 (609)
.+++++|-+.+....... .+.+..-|..+-...++..+.- ....+++.+... -+| ...|.+|.+.|.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYI 259 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHH
Confidence 999998888887765421 2334444555444444443322 233444443332 223 357888999999
Q ss_pred hcCCHHHHHHHHHhcCCC--ChhHHHHHHHHHHhCC-----------------c------hHHHHHHHHhHHCCC-----
Q 007288 261 RFDCLSDANQYFDEMTEK--DLITWNTIIAGYEKSG-----------------S------SECLNMFSKMKSERF----- 310 (609)
Q Consensus 261 ~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~-----------------~------~~a~~~~~~m~~~~~----- 310 (609)
+.|.+++|.++|++.... .+.-|..+.++|+.-. . +-.+.-|+.+...+.
T Consensus 260 r~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNs 339 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNS 339 (835)
T ss_pred HhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHH
Confidence 999999999998876542 2222333333332211 0 112233333333210
Q ss_pred ------CCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC------chhHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 007288 311 ------SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG------NLALANALIDMYAKCGNISDSQKIFSEMSDR 378 (609)
Q Consensus 311 ------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 378 (609)
+-+..+|..-. -...|+..+....+.++++. +.| -...+..+...|-..|+++.|..+|++..+-
T Consensus 340 VlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V 416 (835)
T KOG2047|consen 340 VLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV 416 (835)
T ss_pred HHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 01112222111 12345666677777777653 122 2346778889999999999999999999874
Q ss_pred Ccc-------hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------------CHHHHHHHHHHHhccCCHHHH
Q 007288 379 DLV-------TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP-----------------DRIVFMAVLTACSHAGLVDEG 434 (609)
Q Consensus 379 ~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----------------~~~~~~~ll~~~~~~~~~~~a 434 (609)
+-. +|..-...=.++.+++.|++++++.....-.| +...|...+..-...|-++..
T Consensus 417 ~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfest 496 (835)
T KOG2047|consen 417 PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFEST 496 (835)
T ss_pred CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHH
Confidence 433 34444444457788999999988876432111 223455666666677888999
Q ss_pred HHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CC-CC-HhhHHHHHHHHH---hCCChHHHHHHHHH
Q 007288 435 LKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-P-FK-PD-ESVWGPLLGACK---EHRLPNLGKLAALR 507 (609)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~-p~-~~~~~~l~~~~~---~~~~~~~a~~~~~~ 507 (609)
..+++++.+..+. ++.+.-.....+-....++++.+++++- + ++ |+ ...|+..+.-+. .....+.|..+|++
T Consensus 497 k~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEq 575 (835)
T KOG2047|consen 497 KAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQ 575 (835)
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 9999999776654 3333333444556778899999999986 2 22 33 346776664332 23478999999999
Q ss_pred HhccCCCCc--chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 508 VLDLKPNMM--GTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 508 ~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
+++.-|+.. ..|...+..=.+-|.-..|..++++...
T Consensus 576 aL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 576 ALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999887322 2333344444456888899999988654
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=99.18 E-value=1.4e-08 Score=106.16 Aligned_cols=258 Identities=12% Similarity=0.077 Sum_probs=182.9
Q ss_pred ChhHHHHHHHHHHh--C---C-chHHHHHHHHhHHCCCCCCH-HhHHHHHHHHH---------hhccHHHHHHHHHHHHH
Q 007288 279 DLITWNTIIAGYEK--S---G-SSECLNMFSKMKSERFSPNC-FTFTSIIAACA---------TLAALSCGQQVHAGIVR 342 (609)
Q Consensus 279 ~~~~~~~li~~~~~--~---~-~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 342 (609)
+...|...+.+... . + .++|...|++..+. .|+. ..|..+..++. ..++.++|...++++.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44455555555321 1 1 57888899988864 4543 34444443332 23458899999999988
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HH
Q 007288 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--R-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI-VF 418 (609)
Q Consensus 343 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~ 418 (609)
.+ +.+...+..+..++...|++++|...|++..+ | +...+..+...+...|++++|+..+++..+. .|+.. .+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 75 45677788888899999999999999999874 4 4467888889999999999999999999985 45432 33
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhH-HHHHHHHHhCC
Q 007288 419 MAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDESVW-GPLLGACKEHR 496 (609)
Q Consensus 419 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~~~~ 496 (609)
..++..+...|++++|...++++.+...+-+...+..+..++...|++++|.+.+.++ +..|+.... +.+...+...|
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 3444456678999999999999865442334556777888999999999999999987 445554443 44445667666
Q ss_pred ChHHHHHHHHHHhc---cCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 497 LPNLGKLAALRVLD---LKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 497 ~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
+.|...++.+.+ ..|.++. .+...|.-.|+-+.+..+ +++.+.+.
T Consensus 490 --~~a~~~l~~ll~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 490 --ERALPTIREFLESEQRIDNNPG---LLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred --HHHHHHHHHHHHHhhHhhcCch---HHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 477777777655 3443332 367777788888888777 88877654
No 69
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.18 E-value=2.3e-06 Score=84.37 Aligned_cols=487 Identities=11% Similarity=0.118 Sum_probs=272.1
Q ss_pred HHhHHHHHHHccCChhHHHHhhccCCC-----CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHh
Q 007288 48 LATNLIKSYFDEGLIEEARTLFDEMPE-----RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKAC 122 (609)
Q Consensus 48 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 122 (609)
+|-..++.+.++|++..-+..|+.... .....|...+.-....+-++-++.+|++..+- ++..-.-.+..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHH
Confidence 566677778889999999999887542 23456888898888899999999999999873 333466777888
Q ss_pred hCCCChHHHHHHHHHHHHhC------CCCCcchhhHHHHHHHhcCCCH---HHHHHHHccCCCC----ChhhHHHHHHHH
Q 007288 123 KGMKSLSNAALVHGMAIKEG------LEGSIYVENSLMDVYATCCISM---DNARLVFNDMKWK----NDVSWTTLITGY 189 (609)
Q Consensus 123 ~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~g~~~---~~A~~~~~~~~~~----~~~~~~~li~~~ 189 (609)
+..+++++|.+.+...+... .+.+-..|..+.+..++.- +. -....+++.+..+ -...|++|.+.|
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p-~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNP-DKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCc-chhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 89999999999888876542 2334556777766666543 21 1233444444332 346799999999
Q ss_pred HhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc----------------C------CchhHHHHHHHHHHhC---
Q 007288 190 AHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST----------------G------WVSFGKLIHAAVIKHG--- 244 (609)
Q Consensus 190 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----------------g------~~~~a~~~~~~~~~~g--- 244 (609)
.+.|.+++|.++|++.+..-. +...|..+..+|+.- | +++-...-|+.+....
T Consensus 259 Ir~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~ 336 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL 336 (835)
T ss_pred HHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH
Confidence 999999999999998876522 333344444443321 1 1122222333333221
Q ss_pred --------CCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---C------ChhHHHHHHHHHHhCC-chHHHHHHHHhH
Q 007288 245 --------FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE---K------DLITWNTIIAGYEKSG-SSECLNMFSKMK 306 (609)
Q Consensus 245 --------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~------~~~~~~~li~~~~~~~-~~~a~~~~~~m~ 306 (609)
-+.++..|..-+. +..|+..+-...|.+... | -...|..+..-|-..| .+.|..+|++..
T Consensus 337 lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 337 LNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 0112222222222 223445555555554422 1 1235777777777777 788888887766
Q ss_pred HCCCCCC---HHhHHHHHHHHHhhccHHHHHHHHHHHHHh-----------CCCC------chhHHHHHHHHHHhcCCHH
Q 007288 307 SERFSPN---CFTFTSIIAACATLAALSCGQQVHAGIVRR-----------GLDG------NLALANALIDMYAKCGNIS 366 (609)
Q Consensus 307 ~~~~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------~~~~------~~~~~~~l~~~~~~~g~~~ 366 (609)
+...+-- ..+|......-.+..+++.|..+.+..... +.++ +..+|...++.--..|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 5432211 112222222233455666666666654321 1111 1223344444445566777
Q ss_pred HHHHHHHhcCCCCcchHHHHH---HHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhc---cCCHHHHHHHHH
Q 007288 367 DSQKIFSEMSDRDLVTWTSMM---IGYGAHGHGKEAIELFDEMVKSGVRPDRI-VFMAVLTACSH---AGLVDEGLKYFK 439 (609)
Q Consensus 367 ~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~---~~~~~~a~~~~~ 439 (609)
....+|+.+.+--+.|=..++ ..+-.+.-++++.++|++-+..=-.|+.. .|+..+..+.+ ...++.|..+|+
T Consensus 495 stk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFE 574 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFE 574 (835)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 777777776642222211111 12234445666776666555432234443 55555544433 236777888888
Q ss_pred HhhhcCCCCChh--HHHHHHHHHhhcCCHHHHHHHHHhC--CCCC--CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCC
Q 007288 440 SMNDYNVNPNKE--IYGCVVDLLGRAGRVKEAYELIKSM--PFKP--DESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 440 ~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 513 (609)
...+ |.+|... .|-.....=-+.|-...|++++++. +.++ -...|+..|.-....=-...-..+|+++++.-|
T Consensus 575 qaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp 653 (835)
T KOG2047|consen 575 QALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLP 653 (835)
T ss_pred HHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCC
Confidence 8766 5444322 1222222223457777777777777 2222 123455555333322234445666777777666
Q ss_pred CC--cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 514 NM--MGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 514 ~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
++ .......++.=.+.|..+.|..++..-.+
T Consensus 654 ~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 654 DSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred hHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 32 22333456666667777777777665544
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.15 E-value=1.9e-08 Score=93.27 Aligned_cols=196 Identities=11% Similarity=0.055 Sum_probs=118.4
Q ss_pred HhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHH
Q 007288 315 FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYG 391 (609)
Q Consensus 315 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 391 (609)
..+..+...+...|+++.|...+++..+.. +.+...+..+...|...|++++|.+.++...+ .+...+..+...+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 344445555555666666666666555443 23344555566666666666666666665552 23345556666667
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHH
Q 007288 392 AHGHGKEAIELFDEMVKSGVRP-DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470 (609)
Q Consensus 392 ~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 470 (609)
..|++++|.+.+++..+....| ....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777777776532222 23355556666777777777777777775533 224556666777777777777777
Q ss_pred HHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccC
Q 007288 471 ELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLK 512 (609)
Q Consensus 471 ~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 512 (609)
+.+++. ...| +...+..+...+...|+.+.|....+.+.+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 777665 2222 34455555566777777777777766665543
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.15 E-value=5.1e-08 Score=97.26 Aligned_cols=128 Identities=13% Similarity=0.117 Sum_probs=89.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhhhc----CCC---C
Q 007288 383 WTSMMIGYGAHGHGKEAIELFDEMVKS---GVRPDR----IVFMAVLTACSHAGLVDEGLKYFKSMNDY----NVN---P 448 (609)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~---~ 448 (609)
++.+...+...+++++|..++++..+. -+.++. .+++.|...|.+.|++++|.++++++... +.. -
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 445556666777777777777665541 122222 37888888888888888888888887322 111 1
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-HhhHHHHHHHHHhCCChHHHHHHHHHHhc
Q 007288 449 NKEIYGCVVDLLGRAGRVKEAYELIKSM--------PFKPD-ESVWGPLLGACKEHRLPNLGKLAALRVLD 510 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 510 (609)
....++.|...|.+.+++.+|.++|.+. +..|+ ..+|..|..+|...|+++.|.++.+.+..
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2345677888888888888888877765 23344 46888899999999999999999888764
No 72
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.13 E-value=7.8e-09 Score=88.82 Aligned_cols=171 Identities=13% Similarity=0.149 Sum_probs=147.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHH
Q 007288 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR-IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLL 460 (609)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 460 (609)
+...|..+|...|+...|..-+++.++. .|+. .++..+...|.+.|..+.|.+.|+...+... -+..+.|....-+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHH
Confidence 4556778899999999999999999985 5655 4899999999999999999999999977553 3678899999999
Q ss_pred hhcCCHHHHHHHHHhCCCCC----CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHH
Q 007288 461 GRAGRVKEAYELIKSMPFKP----DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFA 536 (609)
Q Consensus 461 ~~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 536 (609)
|..|++++|...|++.-..| -..+|..+.-+..+.|+.+.|...+++.++.+|+.+.....+.....+.|++-+|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 99999999999999983333 35688899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcccCceeEE
Q 007288 537 KFRKIMRGMGSKKEVGMSWI 556 (609)
Q Consensus 537 ~~~~~m~~~~~~~~~~~~~~ 556 (609)
.+++.....+. ......|.
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L 212 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLL 212 (250)
T ss_pred HHHHHHHhccc-ccHHHHHH
Confidence 99999988776 44444444
No 73
>PRK12370 invasion protein regulator; Provisional
Probab=99.10 E-value=1.7e-08 Score=105.66 Aligned_cols=227 Identities=10% Similarity=-0.029 Sum_probs=169.5
Q ss_pred CHHhHHHHHHHHH-----hhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH---------hcCCHHHHHHHHHhcCC-
Q 007288 313 NCFTFTSIIAACA-----TLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA---------KCGNISDSQKIFSEMSD- 377 (609)
Q Consensus 313 ~~~t~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~- 377 (609)
+...|...+.+.. ..++.+.|...+++..+.. +.+...+..+..+|. ..+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 3344445555432 2345789999999988764 233455555655544 23458899999998874
Q ss_pred -C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHH
Q 007288 378 -R-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD-RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG 454 (609)
Q Consensus 378 -~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 454 (609)
| +...+..+...+...|++++|...|++..+. .|+ ...+..+...+...|++++|...+++..+.+.. +...+.
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 3 5567888888899999999999999999985 455 457888888999999999999999999776533 223333
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC--CCCCCHh-hHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 007288 455 CVVDLLGRAGRVKEAYELIKSM--PFKPDES-VWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK 531 (609)
Q Consensus 455 ~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 531 (609)
.++..+...|++++|+..+++. ...|+.. .+..+..++...|+.++|...++++....|.+......++..|...|
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 489 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS- 489 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH-
Confidence 4455567789999999999887 2235444 45666678889999999999999998888877777888888888888
Q ss_pred hHHHHHHHHHHHhC
Q 007288 532 WEEFAKFRKIMRGM 545 (609)
Q Consensus 532 ~~~A~~~~~~m~~~ 545 (609)
+.|...++.+.+.
T Consensus 490 -~~a~~~l~~ll~~ 502 (553)
T PRK12370 490 -ERALPTIREFLES 502 (553)
T ss_pred -HHHHHHHHHHHHH
Confidence 5888888887653
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.08 E-value=1.9e-08 Score=96.10 Aligned_cols=190 Identities=17% Similarity=0.126 Sum_probs=113.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 007288 350 ALANALIDMYAKCGNISDSQKIFSEMSD--R-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD-RIVFMAVLTAC 425 (609)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~ 425 (609)
..|..+...|.+.|+.++|...|+...+ | +...|+.+...+...|++++|...|++..+. .|+ ..++..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 3455556666777777777777766653 2 4466777777777777777777777777763 444 34666666777
Q ss_pred hccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhCCChHHHHH
Q 007288 426 SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM--PFKPDESVWGPLLGACKEHRLPNLGKL 503 (609)
Q Consensus 426 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~ 503 (609)
...|++++|.+.++...+.+ |+..........+...+++++|.+.+.+. ...|+...| .+ .....|+...+ .
T Consensus 143 ~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~~--~~~~lg~~~~~-~ 216 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW-NI--VEFYLGKISEE-T 216 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH-HH--HHHHccCCCHH-H
Confidence 77777777777777775543 33221222222334556777777777554 222222211 12 22223443332 1
Q ss_pred HHHHHh-------ccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 504 AALRVL-------DLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 504 ~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
.++.+. ++.|....+|..++..+.+.|++++|+..|++..+.++
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 217 LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 222222 34455566788888888888888888888888876544
No 75
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.07 E-value=5.3e-07 Score=91.21 Aligned_cols=282 Identities=12% Similarity=0.064 Sum_probs=142.3
Q ss_pred HHHhcCChhhHHHHHHHHHHCCCCCCHh-hHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC---
Q 007288 188 GYAHSGNGYGGLGVFKEMLLEGVEMNPY-SFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFD--- 263 (609)
Q Consensus 188 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g--- 263 (609)
.+...|++++|++.+++-... .+|.. .+......+.+.|+.++|..++..+++.+ +.|..-|..+..+.+-..
T Consensus 13 il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccc
Confidence 345567777777776554332 23333 33445555666777777777777777664 444445555555542222
Q ss_pred --CHHHHHHHHHhcCCC--ChhHHHHHHHHHHhCC--chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHH
Q 007288 264 --CLSDANQYFDEMTEK--DLITWNTIIAGYEKSG--SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVH 337 (609)
Q Consensus 264 --~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~--~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 337 (609)
+.+....+++++.+. .......+.-.+.... ...+...+..+...|+++ +|+.+-..|......+-...++
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHH
Confidence 345555666655431 1111111111111111 234445556666667543 3334444444444444444444
Q ss_pred HHHHHh----C----------CCCch--hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-cchHHHHHHHHHhcCCHHH
Q 007288 338 AGIVRR----G----------LDGNL--ALANALIDMYAKCGNISDSQKIFSEMSD--RD-LVTWTSMMIGYGAHGHGKE 398 (609)
Q Consensus 338 ~~~~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~ 398 (609)
...... + -+|+. .++.-+...|-..|++++|+.+++...+ |+ +..|..-...+-..|++.+
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHH
Confidence 443322 1 11222 2334455556666666666666666553 32 2345555566666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhH--------HHHHHHHHhhcCCHHHHH
Q 007288 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEI--------YGCVVDLLGRAGRVKEAY 470 (609)
Q Consensus 399 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~g~~~~A~ 470 (609)
|.+.++..+... .-|...=+.....+.++|++++|.+++....+.+..|.... ......+|.+.|++..|+
T Consensus 247 Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 247 AAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 666666666543 12334444455556666666666666666644343222111 123445666666666666
Q ss_pred HHHHhC
Q 007288 471 ELIKSM 476 (609)
Q Consensus 471 ~~~~~~ 476 (609)
..|..+
T Consensus 326 k~~~~v 331 (517)
T PF12569_consen 326 KRFHAV 331 (517)
T ss_pred HHHHHH
Confidence 555444
No 76
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=4.2e-06 Score=84.74 Aligned_cols=202 Identities=10% Similarity=0.041 Sum_probs=113.0
Q ss_pred hHHhHHHHHHHccCChhHHHHhhccCCC-----------CCc-ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcch
Q 007288 47 ILATNLIKSYFDEGLIEEARTLFDEMPE-----------RDV-VSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFT 114 (609)
Q Consensus 47 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t 114 (609)
.+|.++.+++.+..++|-|.-.+-.|.+ .|. ..=....-.....|..++|..+|++.++.
T Consensus 758 ~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~-------- 829 (1416)
T KOG3617|consen 758 SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY-------- 829 (1416)
T ss_pred HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH--------
Confidence 4566666666666666666555555442 011 11111111123445566666666555542
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCC------------------
Q 007288 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW------------------ 176 (609)
Q Consensus 115 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~------------------ 176 (609)
..|=..|-..|.+++|.++.+.-.+-.+. .+|......+-..+ +.+.|++.|+....
T Consensus 830 -DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~-Di~~AleyyEK~~~hafev~rmL~e~p~~~e~ 904 (1416)
T KOG3617|consen 830 -DLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARR-DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQ 904 (1416)
T ss_pred -HHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhc-cHHHHHHHHHhcCChHHHHHHHHHhChHHHHH
Confidence 22233344556666666554432222221 23333334344444 77777777765432
Q ss_pred -----CChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhH
Q 007288 177 -----KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251 (609)
Q Consensus 177 -----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~ 251 (609)
+|...|.-....+-..|+.+.|+.+|...++ |-++++..|-.|+.++|-++-++ .-|...
T Consensus 905 Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AA 969 (1416)
T KOG3617|consen 905 YVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAA 969 (1416)
T ss_pred HHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHH
Confidence 2444555555555566777777777766543 45566677777888777777654 335666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC
Q 007288 252 MNSILDMYCRFDCLSDANQYFDEMT 276 (609)
Q Consensus 252 ~~~l~~~~~~~g~~~~A~~~~~~~~ 276 (609)
.-.|.+.|-..|++.+|..+|.+..
T Consensus 970 cYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 970 CYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 6778888888888888888887754
No 77
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.06 E-value=6e-06 Score=81.79 Aligned_cols=407 Identities=13% Similarity=0.150 Sum_probs=222.5
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHH
Q 007288 88 TSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167 (609)
Q Consensus 88 ~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A 167 (609)
...|+-++|.+....-.+..+. +.+.|+.+.-.+....++++|.+.+...++.+.. |..++..+--.-++.| +++..
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmR-d~~~~ 128 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMR-DYEGY 128 (700)
T ss_pred hcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHH-hhhhH
Confidence 4455666666665555543332 4444555555555555666666666666554432 4444544444444444 44444
Q ss_pred HHHHccCCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHCC-CCCCHhhHHHHHH------HHHccCCchhHHHHH
Q 007288 168 RLVFNDMKW---KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG-VEMNPYSFSIAVR------ACASTGWVSFGKLIH 237 (609)
Q Consensus 168 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~------~~~~~g~~~~a~~~~ 237 (609)
...-....+ .....|-.+..++.-.|+...|..++++..+.. -.|+...|..... .....|.++.|.+.+
T Consensus 129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 129 LETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 333333222 244567778888888888888888888887654 2456655543322 245667777776666
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHH-HHHHhCC-chHHH-HHHHHhHHC---C
Q 007288 238 AAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE--KDLITWNTII-AGYEKSG-SSECL-NMFSKMKSE---R 309 (609)
Q Consensus 238 ~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~~-~~~a~-~~~~~m~~~---~ 309 (609)
..-... +......-..-...+.+.+++++|..++..+.. ||...|...+ .++.+-. ..+++ .+|....+. .
T Consensus 209 ~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 209 LDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH 287 (700)
T ss_pred HhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence 554332 122233334556677888888888888888865 3444444433 3443222 33333 455544332 1
Q ss_pred CCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH---H-HHHHHHhcC---------
Q 007288 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNIS---D-SQKIFSEMS--------- 376 (609)
Q Consensus 310 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~-A~~~~~~~~--------- 376 (609)
-.|-... ++......-.+....++..+.+.|+++- +..+...|-.-...+ + +..+...+.
T Consensus 288 e~p~Rlp----lsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D 360 (700)
T KOG1156|consen 288 ECPRRLP----LSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLD 360 (700)
T ss_pred ccchhcc----HHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccc
Confidence 1111111 1111222333444455566666666542 233333332211111 1 111111111
Q ss_pred -----CCCcc--hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCC
Q 007288 377 -----DRDLV--TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI-VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP 448 (609)
Q Consensus 377 -----~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 448 (609)
.|... ++..++..|-..|+++.|...++....+ .|+.. -|..=.+.+...|++++|..++++..+.+ .+
T Consensus 361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~a 437 (700)
T KOG1156|consen 361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TA 437 (700)
T ss_pred ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-ch
Confidence 12333 3344667777888999999888888864 66654 55555677888889999998888887655 34
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHh--------hHHHHH--HHHHhCCChHHHHHHHHHH
Q 007288 449 NKEIYGCVVDLLGRAGRVKEAYELIKSMPFKP-DES--------VWGPLL--GACKEHRLPNLGKLAALRV 508 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~--------~~~~l~--~~~~~~~~~~~a~~~~~~~ 508 (609)
|...-..-..-..++.+.++|.++.....-.- +.. .|-.+- .+|.+.|++..|+.-+..+
T Consensus 438 DR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 438 DRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 55554466677778888888888776651110 111 222222 5577777777776655554
No 78
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.04 E-value=2.8e-06 Score=86.07 Aligned_cols=47 Identities=17% Similarity=0.154 Sum_probs=41.4
Q ss_pred CCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 007288 495 HRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKI 541 (609)
Q Consensus 495 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (609)
..-.++|...++-+.+..|++..+|..-..+|.+.|++--|.+.+.+
T Consensus 470 ~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 470 EDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred CcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 34568899999999999999999999999999999999998887654
No 79
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=1.2e-08 Score=91.81 Aligned_cols=227 Identities=10% Similarity=0.074 Sum_probs=150.0
Q ss_pred HHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 007288 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362 (609)
Q Consensus 284 ~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 362 (609)
+-+..+|.+.| ..+|.+.|+.-... .|-+.||..+-.+|.+..++..|..++.+-.+. .+-++....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 34556666666 66666666655543 344556666666677777777777666665554 233444445566666667
Q ss_pred CCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007288 363 GNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439 (609)
Q Consensus 363 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 439 (609)
++.++|.++|+...+ .++....++...|.-.++++.|+..|+++.+.|+. +...|+.+.-+|.-.+.++-++..|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 777777777777664 24455555666677777888888888888877754 56677777777777777887777777
Q ss_pred HhhhcCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC
Q 007288 440 SMNDYNVNPN--KEIYGCVVDLLGRAGRVKEAYELIKSM-PFK-PDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 440 ~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
+....-..|+ ..+|-.+.......|++..|.+-|+-. ... .+...++.|.-.-.+.|+++.|..++..+....|+
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 7744333333 445666777777778888887777665 222 24566777777777788888888888877777774
No 80
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.01 E-value=4.1e-06 Score=84.60 Aligned_cols=403 Identities=13% Similarity=0.038 Sum_probs=227.5
Q ss_pred CCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCC----C-hhhH
Q 007288 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK----N-DVSW 182 (609)
Q Consensus 108 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~----~-~~~~ 182 (609)
+.-|...|..+.-++...|+++.+.+.|++....-+. ....|..+-..|..+| .--.|..+++.-..+ + ...+
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag-~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAG-SDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhc-cchHHHHHHHhhcccccCCCcchHH
Confidence 4446666666666777777777777777776654332 4556667777777776 666777776654322 1 2222
Q ss_pred HHHHHHHHh-cCChhhHHHHHHHHHHC--CCC--CCHhhHHHHHHHHHc----cC-------CchhHHHHHHHHHHhCCC
Q 007288 183 TTLITGYAH-SGNGYGGLGVFKEMLLE--GVE--MNPYSFSIAVRACAS----TG-------WVSFGKLIHAAVIKHGFG 246 (609)
Q Consensus 183 ~~li~~~~~-~g~~~~a~~~~~~m~~~--g~~--p~~~t~~~ll~~~~~----~g-------~~~~a~~~~~~~~~~g~~ 246 (609)
-..-..|.+ .+..+++++.-.+.... +.. ..+..|..+.-+|.. .. ...++.+.+++..+.+ +
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~ 475 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-P 475 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-C
Confidence 222233333 25566666655555441 111 112223222222221 11 1234555666666654 2
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHhCC-chHHHHHHHHhHHC-CCCCCHHhHHHH
Q 007288 247 SNLPVMNSILDMYCRFDCLSDANQYFDEMTE----KDLITWNTIIAGYEKSG-SSECLNMFSKMKSE-RFSPNCFTFTSI 320 (609)
Q Consensus 247 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~-~~~p~~~t~~~l 320 (609)
.|+.+.-.+.--|+..++++.|....++..+ .+...|..|.-.+...+ +.+|+.+.+..... |. |......-
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~ 553 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGK 553 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhh
Confidence 3333333344456666777777776665433 46667777777777777 77777777665442 11 00000000
Q ss_pred HHHHHhhccHHHHHHHHHHHHH---------------------hCC-------CCchhHHHHHHHHHH---hcCCHHHHH
Q 007288 321 IAACATLAALSCGQQVHAGIVR---------------------RGL-------DGNLALANALIDMYA---KCGNISDSQ 369 (609)
Q Consensus 321 l~~~~~~~~~~~a~~~~~~~~~---------------------~~~-------~~~~~~~~~l~~~~~---~~g~~~~A~ 369 (609)
+..-...++.+.+......+.. .|. .....++..+..... +.-..+..+
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 0111112222222221111110 010 011122222221111 111111111
Q ss_pred HHHHhcCCCCc------chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 007288 370 KIFSEMSDRDL------VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND 443 (609)
Q Consensus 370 ~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 443 (609)
..+.....|+. ..|......+...++.++|...+.+..+. ..-....|......+...|..++|.+.|.....
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 11111112221 24556677788899999999888888764 233445777777888899999999999998866
Q ss_pred cCCCCChhHHHHHHHHHhhcCCHHHHHH--HHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcc
Q 007288 444 YNVNPNKEIYGCVVDLLGRAGRVKEAYE--LIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG 517 (609)
Q Consensus 444 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 517 (609)
.+. -++....++..++.+.|+..-|.. ++..+ .+.| +...|..|...+.+.|+.+.|.+.|..+.++++.+|.
T Consensus 713 ldP-~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 713 LDP-DHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred cCC-CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 442 256788899999999998887777 77776 5555 6789999999999999999999999999998876553
No 81
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=4.2e-05 Score=79.51 Aligned_cols=156 Identities=15% Similarity=0.229 Sum_probs=118.9
Q ss_pred CHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 007288 364 NISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND 443 (609)
Q Consensus 364 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 443 (609)
.++.|.+.-++.. ....|..+..+-.+.|...+|++-|-+. -|...|.-++..+.+.|.+++-.+++...++
T Consensus 1090 ~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1090 SLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred hHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3344443333333 3457888999999999999998877543 3667899999999999999999999988877
Q ss_pred cCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHH
Q 007288 444 YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523 (609)
Q Consensus 444 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 523 (609)
..-.|.+.+ .|+-+|++.++..+..+++. -|+........+-|...|.++.|+-+|. +..-|..|+
T Consensus 1162 k~~E~~id~--eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La 1227 (1666)
T KOG0985|consen 1162 KVREPYIDS--ELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLA 1227 (1666)
T ss_pred hhcCccchH--HHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHH
Confidence 666666654 68999999999999888774 4788888888888999999999988876 345577777
Q ss_pred HHHHhcCChHHHHHHHHH
Q 007288 524 NIYAAEGKWEEFAKFRKI 541 (609)
Q Consensus 524 ~~~~~~g~~~~A~~~~~~ 541 (609)
..+...|.|..|...-++
T Consensus 1228 ~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1228 STLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 777777777766654333
No 82
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.97 E-value=2.8e-06 Score=77.51 Aligned_cols=286 Identities=14% Similarity=0.143 Sum_probs=171.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHH---HHHHhCC-chHHHHHHHHhHHCCCCCCHHhHH-HHHHHHHhhcc
Q 007288 255 ILDMYCRFDCLSDANQYFDEMTEKDLITWNTII---AGYEKSG-SSECLNMFSKMKSERFSPNCFTFT-SIIAACATLAA 329 (609)
Q Consensus 255 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~-~ll~~~~~~~~ 329 (609)
+...+...|++..|+.-|....+-|+..|.++. ..|...| ..-|+.-+...++ ++||-..-. .-...+.+.|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhccc
Confidence 444455556666666666666655555554443 2355555 5555555555544 345533211 12233456666
Q ss_pred HHHHHHHHHHHHHhCCCCch--------------hHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHh
Q 007288 330 LSCGQQVHAGIVRRGLDGNL--------------ALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGA 392 (609)
Q Consensus 330 ~~~a~~~~~~~~~~~~~~~~--------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 392 (609)
++.|..=|+.+.++...... ......+..+.-.|+...|+.....+.+ -|...|..-..+|..
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHh
Confidence 66666666666554321110 0111223334556777777777777664 355666667777888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhH----HHHH---H------HH
Q 007288 393 HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEI----YGCV---V------DL 459 (609)
Q Consensus 393 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l---~------~~ 459 (609)
.|++..|+.-++...+.. ..+..++--+-..+...|+.+.++...++..+.+ ||... |..| . ..
T Consensus 202 ~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~ 278 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQ 278 (504)
T ss_pred cCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHH
Confidence 888888877666665532 2344455555666677777777777777776533 44221 2111 1 22
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCC-----HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChH
Q 007288 460 LGRAGRVKEAYELIKSM-PFKPD-----ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWE 533 (609)
Q Consensus 460 ~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 533 (609)
....++|.++++..+.. ...|. ...+..+-.++...+++.+|++...+++.++|+|..++..-+.+|.-...|+
T Consensus 279 ~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD 358 (504)
T KOG0624|consen 279 AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYD 358 (504)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHH
Confidence 34556677776666555 44444 1233344467778888888988888888888888888888888888888888
Q ss_pred HHHHHHHHHHhC
Q 007288 534 EFAKFRKIMRGM 545 (609)
Q Consensus 534 ~A~~~~~~m~~~ 545 (609)
+|+.-|++..+.
T Consensus 359 ~AI~dye~A~e~ 370 (504)
T KOG0624|consen 359 DAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHhc
Confidence 888888887764
No 83
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.94 E-value=1.1e-05 Score=80.82 Aligned_cols=58 Identities=12% Similarity=-0.017 Sum_probs=30.1
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCC
Q 007288 117 SVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK 177 (609)
Q Consensus 117 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~ 177 (609)
+.|..|.+.|.+..|...... ...+..|..+...+..++.+.. -+++|-.+|+.+..+
T Consensus 620 aaiqlyika~~p~~a~~~a~n--~~~l~~de~il~~ia~alik~e-lydkagdlfeki~d~ 677 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALN--DEELLADEEILEHIAAALIKGE-LYDKAGDLFEKIHDF 677 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcC--HHHhhccHHHHHHHHHHHHhhH-HHHhhhhHHHHhhCH
Confidence 456677788877666543211 1112234444444555555544 556666666665543
No 84
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=3.4e-05 Score=75.81 Aligned_cols=21 Identities=19% Similarity=0.140 Sum_probs=11.7
Q ss_pred HHccCCchhHHHHHHHHHHhC
Q 007288 224 CASTGWVSFGKLIHAAVIKHG 244 (609)
Q Consensus 224 ~~~~g~~~~a~~~~~~~~~~g 244 (609)
+-..|+.++|.+++...++..
T Consensus 234 lQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHhcchHHHHHHHHHHHHhc
Confidence 344556666666665555554
No 85
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.92 E-value=9.8e-06 Score=81.15 Aligned_cols=191 Identities=15% Similarity=0.219 Sum_probs=109.4
Q ss_pred HHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHH
Q 007288 322 AACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401 (609)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 401 (609)
.+......+.+|..+++.++... .-...|..+.+-|...|+++.|+++|.+.- .++-.|..|.+.|+++.|.+
T Consensus 740 eaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHH
Confidence 33445566777777777776553 233456667777777888888887776543 34556677777888877777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 007288 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481 (609)
Q Consensus 402 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~ 481 (609)
+-.+.. |.......|..-..-+-+.|++.+|.+++-.. | .|+. -|.+|-+.|..+..+++..+..-..-
T Consensus 813 la~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l 881 (1636)
T KOG3616|consen 813 LAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHL 881 (1636)
T ss_pred HHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-CchH-----HHHHHHhhCcchHHHHHHHHhChhhh
Confidence 665542 23333445555555566677777776665322 2 2332 34566667777777766666521112
Q ss_pred HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHH
Q 007288 482 ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKF 538 (609)
Q Consensus 482 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 538 (609)
..|...+..-+...|+.+.|++.|-++- -|...+++|...+.|++|.++
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~flea~--------d~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHFLEAG--------DFKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHHHhhh--------hHHHHHHHhhhhhhHHHHHHH
Confidence 2344445555666666666665554432 233444455555555555443
No 86
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=1.8e-05 Score=82.14 Aligned_cols=115 Identities=10% Similarity=0.126 Sum_probs=82.2
Q ss_pred ChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007288 279 DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALID 357 (609)
Q Consensus 279 ~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 357 (609)
....|+.+..+-.+.+ ..+|++.|-+. -|+..|..++..+.+.|.+++-..++....+..-.|... +.|+-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence 3457888888888888 88888777543 367788999999999999999998888888776666554 57888
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 007288 358 MYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404 (609)
Q Consensus 358 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 404 (609)
+|++.+++.+.++++ ..||......+.+-|...|.++.|.-+|.
T Consensus 1175 AyAkt~rl~elE~fi---~gpN~A~i~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFI---AGPNVANIQQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred HHHHhchHHHHHHHh---cCCCchhHHHHhHHHhhhhhhHHHHHHHH
Confidence 899998888776654 23555555555555555555555554443
No 87
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.90 E-value=1.5e-06 Score=83.26 Aligned_cols=216 Identities=9% Similarity=-0.043 Sum_probs=146.2
Q ss_pred chHHHHHHHHhHHCC-CCCC--HHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 007288 295 SSECLNMFSKMKSER-FSPN--CFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKI 371 (609)
Q Consensus 295 ~~~a~~~~~~m~~~~-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 371 (609)
.+.++.-+.+++... ..|+ ...|......+...|+.+.|...|.+..+.. +.+...|+.+...+...|++++|...
T Consensus 42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 344555555555421 2222 2446666667778888888888888887765 44677888899999999999999999
Q ss_pred HHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCC
Q 007288 372 FSEMSD--R-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP 448 (609)
Q Consensus 372 ~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 448 (609)
|+...+ | +..+|..+..++...|++++|++.|++..+. .|+..........+...+++++|...+.+..... .+
T Consensus 121 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~ 197 (296)
T PRK11189 121 FDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DK 197 (296)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-Cc
Confidence 998864 4 4567888888899999999999999999884 4554322222223455678999999997764322 33
Q ss_pred ChhHHHHHHHHHhhcCCHH--HHHHHHHhC-CCC----C-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcc
Q 007288 449 NKEIYGCVVDLLGRAGRVK--EAYELIKSM-PFK----P-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG 517 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~--~A~~~~~~~-~~~----p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 517 (609)
+...+ .+... ..|+.. ++++.+.+. ... | ....|..+...+.+.|++++|...|+++++.+|.+..
T Consensus 198 ~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 198 EQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred cccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 33222 23333 344443 333333322 111 1 2357888889999999999999999999999985443
No 88
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=6.7e-05 Score=70.50 Aligned_cols=263 Identities=7% Similarity=-0.062 Sum_probs=182.2
Q ss_pred CChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhH-HHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHH
Q 007288 278 KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTF-TSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355 (609)
Q Consensus 278 ~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 355 (609)
.|+.....+...+...| ..+|...|++.... .|+..+- -.-.-.+...|+.+....+...+.... .-+...|-.-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 36777888888899999 99999999887653 3443321 111112346677777777766665432 1122222223
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCH
Q 007288 356 IDMYAKCGNISDSQKIFSEMSDRD---LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP-DRIVFMAVLTACSHAGLV 431 (609)
Q Consensus 356 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~ 431 (609)
........+++.|+.+-++..+.+ +..|-.-...+...|++++|.-.|+..+. +.| +..+|..|+.+|...|++
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchH
Confidence 334455678888888888877543 34444444667888999999999998887 454 456999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCChhHHHHHH-HHHh-hcCCHHHHHHHHHhC-CCCCCH-hhHHHHHHHHHhCCChHHHHHHHHH
Q 007288 432 DEGLKYFKSMNDYNVNPNKEIYGCVV-DLLG-RAGRVKEAYELIKSM-PFKPDE-SVWGPLLGACKEHRLPNLGKLAALR 507 (609)
Q Consensus 432 ~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 507 (609)
.+|...-+...+. ++.+..+...+. ..+. ...--++|..++++. .++|+- ...+.+...|...|..+.++.++++
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 9998887776331 234555555442 2222 233457788888876 677764 3455666889999999999999999
Q ss_pred HhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 508 VLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 508 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
.+...| |......|++.+...+.+.+|...|......++
T Consensus 464 ~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 464 HLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 999998 578889999999999999999999888876433
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2.4e-06 Score=82.78 Aligned_cols=373 Identities=13% Similarity=0.098 Sum_probs=229.0
Q ss_pred HHHHhcCCCHHHHHHHHccCC---CCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-HhhHHHHHHHHHccCCc
Q 007288 155 DVYATCCISMDNARLVFNDMK---WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMN-PYSFSIAVRACASTGWV 230 (609)
Q Consensus 155 ~~~~~~g~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~ 230 (609)
.+.+..| +++.|...|-+.. .+|.+.|..=..+|+..|++++|++--.+-++. .|+ ...|+-...++.-.|++
T Consensus 10 naa~s~~-d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSG-DFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred Hhhcccc-cHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 3455677 9999999997643 347778888889999999999998877776654 566 45788888889999999
Q ss_pred hhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHH------hcCC-C------ChhHHHHHHHHHHhCC---
Q 007288 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFD------EMTE-K------DLITWNTIIAGYEKSG--- 294 (609)
Q Consensus 231 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~------~~~~-~------~~~~~~~li~~~~~~~--- 294 (609)
++|..-|.+-++.. +.+...++.+..++... . .+...|. .+.. | ....|..++..+-+..
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 99999999888875 66777888888877211 0 1111111 1100 0 1122333333322211
Q ss_pred --------chHHHHHHHH-----hHHCC-------CCC------------C----------HHhHHHHHHHHHhhccHHH
Q 007288 295 --------SSECLNMFSK-----MKSER-------FSP------------N----------CFTFTSIIAACATLAALSC 332 (609)
Q Consensus 295 --------~~~a~~~~~~-----m~~~~-------~~p------------~----------~~t~~~ll~~~~~~~~~~~ 332 (609)
...+.-.+.. +...| ..| | ..-...+.++..+..+++.
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 1111111100 00001 111 0 1123455566666677777
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc---chHHH-------HHHHHHhcCCHHHHHHH
Q 007288 333 GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDL---VTWTS-------MMIGYGAHGHGKEAIEL 402 (609)
Q Consensus 333 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~-------li~~~~~~g~~~~A~~~ 402 (609)
+.+-+....... .+..-++....+|...|.+..+...-....+... .-|+. +..+|.+.++++.|+..
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 777777776655 5555666777777777777776655554433211 11222 33355666777888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-
Q 007288 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP- 480 (609)
Q Consensus 403 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 480 (609)
|++.......|+.. .+....+++........-.+... ..-...-...+.+.|++..|+..|.++ ...|
T Consensus 321 ~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~ 390 (539)
T KOG0548|consen 321 YQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE 390 (539)
T ss_pred HHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc
Confidence 87766654444322 12223334444333332222211 111122256667888888888888877 3445
Q ss_pred CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 481 DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 481 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
|...|..-.-+|.+.+.+..|+.-.+..++++|+....|..=+.++....+|+.|.+.|++-.+.+
T Consensus 391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 566777777888888888888888888888888888888888888888888888888888777654
No 90
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.86 E-value=1.6e-06 Score=74.98 Aligned_cols=196 Identities=10% Similarity=0.014 Sum_probs=122.3
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhc
Q 007288 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAH 393 (609)
Q Consensus 317 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 393 (609)
...+.-.|...|+...|..-+++.+++. +.+..++..+...|.+.|+.+.|.+.|+...+ .+....|....-+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 3444555666667777777666666654 33455566666667777777777777766653 2445566666666777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 007288 394 GHGKEAIELFDEMVKSGVRPDR-IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472 (609)
Q Consensus 394 g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 472 (609)
|++++|...|++......-|.. .||..+.-+..+.|+.+.|...|++..+.... .......+.....+.|++..|..+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHH
Confidence 7777777777777664333322 36666666666777777777777776554422 334455566666677777777776
Q ss_pred HHhC--CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC
Q 007288 473 IKSM--PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 473 ~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
++.. ...++..+....|......|+.+.+.+.-.++....|.
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 6665 22355555555566666777777776666666666664
No 91
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=7.1e-06 Score=83.18 Aligned_cols=382 Identities=14% Similarity=0.107 Sum_probs=229.4
Q ss_pred ChhHHhHHHH--HHHccCChhHHHHhhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHC-C--------CCCCcc
Q 007288 45 PSILATNLIK--SYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN-E--------VNPNAF 113 (609)
Q Consensus 45 ~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g--------~~p~~~ 113 (609)
|..+-.++++ .|..-|+.|.|.+-.+.+. +-..|..|.+.+++.++.+-|.-.+-.|... | -.|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 4555666664 5667799998887766654 3456999999999999999888887777531 1 1222 2
Q ss_pred hHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCC-ChhhHHHHHHHHHhc
Q 007288 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK-NDVSWTTLITGYAHS 192 (609)
Q Consensus 114 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~ 192 (609)
+=.-+.-.....|.+++|..++.+..+.. .|=..|...| .+++|.++-+.-..- -..+|......+-..
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g-~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQG-MWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcc-cHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 22223333467789999999999887643 3455666777 999999887654432 223455556666667
Q ss_pred CChhhHHHHHHHH----------HHCC---------CCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHH
Q 007288 193 GNGYGGLGVFKEM----------LLEG---------VEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMN 253 (609)
Q Consensus 193 g~~~~a~~~~~~m----------~~~g---------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 253 (609)
++.+.|++.|++. .... -.-|..-|.....-+-..|+.+.|+.+|..... |-
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~f 942 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YF 942 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hh
Confidence 8888888877652 1111 112444445555555667777777777776554 34
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHH-------
Q 007288 254 SILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACA------- 325 (609)
Q Consensus 254 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~------- 325 (609)
++++..|-.|+.++|-.+-++-. |......|.+.|-..| ..+|..+|.+... |...|+.|-
T Consensus 943 s~VrI~C~qGk~~kAa~iA~esg--d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~ 1011 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEESG--DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDR 1011 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhcc--cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHH
Confidence 56677777788888877766543 5566667788888888 8888888876542 233333221
Q ss_pred ------h--hccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------------CCcchH
Q 007288 326 ------T--LAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--------------RDLVTW 383 (609)
Q Consensus 326 ------~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------~~~~~~ 383 (609)
. ..+.-.|-.+|++. |. ....-+..|-+.|.+.+|+++--+-.+ .|+...
T Consensus 1012 L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll 1083 (1416)
T KOG3617|consen 1012 LANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLL 1083 (1416)
T ss_pred HHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHH
Confidence 1 11222333333332 11 112344567777777777665322221 345555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh-hhcCCCCC----hhHHHHHHH
Q 007288 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPN----KEIYGCVVD 458 (609)
Q Consensus 384 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~----~~~~~~l~~ 458 (609)
+.-..-|..+.++++|..++-..++ |...+.. |+..++.-..++-+.| ...+-.|+ ..+...+.+
T Consensus 1084 ~RcadFF~~~~qyekAV~lL~~ar~---------~~~Alql-C~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae 1153 (1416)
T KOG3617|consen 1084 RRCADFFENNQQYEKAVNLLCLARE---------FSGALQL-CKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAE 1153 (1416)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHH-HhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHH
Confidence 6666667777888888877766544 2223332 3333344444444444 22212233 234556667
Q ss_pred HHhhcCCHHHHHHHHHhCC
Q 007288 459 LLGRAGRVKEAYELIKSMP 477 (609)
Q Consensus 459 ~~~~~g~~~~A~~~~~~~~ 477 (609)
.|.+.|.+..|-+-|.+.|
T Consensus 1154 ~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1154 LCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred HHHhccchHHHHHHHhhhh
Confidence 7777787777777776665
No 92
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.84 E-value=2.6e-05 Score=77.46 Aligned_cols=422 Identities=10% Similarity=-0.014 Sum_probs=234.2
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCC---CChhhHHHHHHHHHh
Q 007288 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW---KNDVSWTTLITGYAH 191 (609)
Q Consensus 115 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 191 (609)
|..++.. ...+.+....+..+.+++.-.+ -..+.....-.+...| +-++|......-.. .+.+.|+.+.-.+-.
T Consensus 11 F~~~lk~-yE~kQYkkgLK~~~~iL~k~~e-HgeslAmkGL~L~~lg-~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKC-YETKQYKKGLKLIKQILKKFPE-HGESLAMKGLTLNCLG-KKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHH-HHHHHHHhHHHHHHHHHHhCCc-cchhHHhccchhhccc-chHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence 3444443 3456777777777777763222 2233332223334445 77777777665543 356778887777777
Q ss_pred cCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 007288 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQY 271 (609)
Q Consensus 192 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 271 (609)
..++++|++.|......+. -|...+.-+--.-++.|+++..........+.. +.....|..+..++.-.|+...|..+
T Consensus 88 dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888776532 245555555555566677776666666665542 33455666677777777777777777
Q ss_pred HHhcCC-----CChhHHHHHHH------HHHhCC-chHHHHHHHHhHHCCCCCCHHhH-HHHHHHHHhhccHHHHHHHHH
Q 007288 272 FDEMTE-----KDLITWNTIIA------GYEKSG-SSECLNMFSKMKSERFSPNCFTF-TSIIAACATLAALSCGQQVHA 338 (609)
Q Consensus 272 ~~~~~~-----~~~~~~~~li~------~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~ 338 (609)
.+...+ ++...+..... .....| .++|++.+..-... ..|...+ .+-...+.+.+++++|..++.
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 666542 23333332222 233444 45555554433221 1222222 233344566677777777777
Q ss_pred HHHHhCCCCchhHHHHHHHHHHh-cCCHHHHHHHHHhcCCC-Cc-chHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCC
Q 007288 339 GIVRRGLDGNLALANALIDMYAK-CGNISDSQKIFSEMSDR-DL-VTWTSMMIGYGA-HGHGKEAIELFDEMVKSGVRPD 414 (609)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~-~~-~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~ 414 (609)
.+.... +.+...|-.+..++.+ .+..+....+|....+. .. ..-..+--.... ..-.+..-+++..+.+.|+++-
T Consensus 244 ~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v 322 (700)
T KOG1156|consen 244 RLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV 322 (700)
T ss_pred HHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch
Confidence 776653 2233333334444432 22222222555544421 10 000001011111 1222334455666667776543
Q ss_pred HHHHHHHHHHHhccCCHHH----HHHHHHHhhhcCC----------CCChhH--HHHHHHHHhhcCCHHHHHHHHHhC-C
Q 007288 415 RIVFMAVLTACSHAGLVDE----GLKYFKSMNDYNV----------NPNKEI--YGCVVDLLGRAGRVKEAYELIKSM-P 477 (609)
Q Consensus 415 ~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~----------~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~-~ 477 (609)
-..+.++ |-.....+- +..+...+...|. +|.... +-.++..+-+.|+++.|...++.. +
T Consensus 323 f~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId 399 (700)
T KOG1156|consen 323 FKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID 399 (700)
T ss_pred hhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 3333333 322222111 1122222211111 344433 345777888999999999999887 5
Q ss_pred CCCCHh-hHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 478 FKPDES-VWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 478 ~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
..|+.+ .|..-.+.+...|+.++|...++++.+++-.|...-.--+.-..++.+.++|.++.....+.|.
T Consensus 400 HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 400 HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 556543 3333347788889999999999999998876655444677777888999999999988887665
No 93
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=2.5e-06 Score=76.19 Aligned_cols=336 Identities=12% Similarity=0.043 Sum_probs=176.4
Q ss_pred HHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHH--HHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 007288 188 GYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA--CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCL 265 (609)
Q Consensus 188 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 265 (609)
.+.+.+.+..|+.+...|.+. |+...-..-+.+ .-+.+++..+..+.++....| +..+.+.......+.|++
T Consensus 87 SLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 344556666666666665442 121111111111 234556666666655543222 334444445555666777
Q ss_pred HHHHHHHHhcCC----CChhHHHHHHHHHHhCCchHHHHHHHHhHHCCCCCCHHh-HH---HHHHHHHhhccHHHHHHHH
Q 007288 266 SDANQYFDEMTE----KDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFT-FT---SIIAACATLAALSCGQQVH 337 (609)
Q Consensus 266 ~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~p~~~t-~~---~ll~~~~~~~~~~~a~~~~ 337 (609)
+.|.+-|+...+ .....||.-+..|.+.....|++...+++++|++-.+.. .. -.+.+ ...|+. ..
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~~-- 234 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---LV-- 234 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---HH--
Confidence 777776666554 244566666666655557777777777766664321110 00 00000 000000 00
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007288 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD-----RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412 (609)
Q Consensus 338 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 412 (609)
|..++ -+..+|.-...+.+.|+++.|.+.+..|.. -|++|...+.-.- ..+++.+..+-++-+.....
T Consensus 235 --lh~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP- 307 (459)
T KOG4340|consen 235 --LHQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP- 307 (459)
T ss_pred --HHHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-
Confidence 00000 012234444556788999999999999983 3666666554322 23445555555555555422
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCC-CCChhHHHHHHHHHh-hcCCHHHHHHHHHhCCCCCCHhhHHHHH-
Q 007288 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV-NPNKEIYGCVVDLLG-RAGRVKEAYELIKSMPFKPDESVWGPLL- 489 (609)
Q Consensus 413 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~p~~~~~~~l~- 489 (609)
-...||..++-.||+..-++-|-.++-+-...-+ -.+...|+ |++++. ..-.+++|.+-++.+...-....-...+
T Consensus 308 fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~ 386 (459)
T KOG4340|consen 308 FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQ 386 (459)
T ss_pred CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456999999999999999999888866422111 12344454 344444 3456777777666551110111111111
Q ss_pred -HHHHhCCCh---HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 490 -GACKEHRLP---NLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 490 -~~~~~~~~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
.--...++- ..+.+-+++.+++.- .....-++.|+...++.-+.++|..-.+-.
T Consensus 387 vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC 444 (459)
T KOG4340|consen 387 VQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVEFC 444 (459)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHhhh
Confidence 111222221 233344444444332 355667888899999999999998887643
No 94
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=1.5e-07 Score=91.77 Aligned_cols=218 Identities=14% Similarity=0.137 Sum_probs=170.7
Q ss_pred HhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCHHHHHH
Q 007288 325 ATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR---DLVTWTSMMIGYGAHGHGKEAIE 401 (609)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 401 (609)
.+.|++..|.-.|+..++.. +-+...|..|.......++-..|+..+++..+- |....-.|...|...|.-..|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 56778888888888887765 556777888888888888888888888888753 45566677778888888889999
Q ss_pred HHHHHHHCCCC--------CCHHHHHHHHHHHhccCCHHHHHHHHHHh-hhcCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 007288 402 LFDEMVKSGVR--------PDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472 (609)
Q Consensus 402 ~~~~m~~~g~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 472 (609)
.++.-+....+ ++...-.. ..+.....+....++|-++ ...+..+|..+...|.-.|.-.|.+++|+..
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 98887653211 00000000 1222233345556666666 6666668899999999999999999999999
Q ss_pred HHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 473 IKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 473 ~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
|+.. ..+| |...||.|...+....+.++|+..|.+++++.|.-......|+-.|...|.|++|.+.|-.....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9988 6677 67799999999999999999999999999999999999999999999999999999998777653
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.80 E-value=2.3e-05 Score=71.65 Aligned_cols=317 Identities=10% Similarity=0.064 Sum_probs=206.2
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHH---HHHHccCCchhHHHHHHHHHHhCCCCChh-HHH
Q 007288 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV---RACASTGWVSFGKLIHAAVIKHGFGSNLP-VMN 253 (609)
Q Consensus 178 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll---~~~~~~g~~~~a~~~~~~~~~~g~~~~~~-~~~ 253 (609)
++.-.--+...+...|++..|+.-|...++. |+..|..+. ..|...|+..-|..-+..+++. .||-. ..-
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 3444556777788888999999888888664 444454443 4567788888888878777765 55532 222
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCchHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHH
Q 007288 254 SILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG 333 (609)
Q Consensus 254 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 333 (609)
.-...+.+.|.++.|..-|+.+.+.++. -+....++.+.. ..+++ ......+..+...|+...|
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s-~~~~~eaqskl~------~~~e~---------~~l~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPS-NGLVLEAQSKLA------LIQEH---------WVLVQQLKSASGSGDCQNA 174 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCC-cchhHHHHHHHH------hHHHH---------HHHHHHHHHHhcCCchhhH
Confidence 3345677888999998888887653221 000111111111 00111 1122233344556777777
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007288 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS---DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410 (609)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 410 (609)
+.....+.+.. +.|...+..-..+|...|++..|+.=++... ..+..++..+-..+...|+.+.++...++-++
T Consensus 175 i~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK-- 251 (504)
T KOG0624|consen 175 IEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK-- 251 (504)
T ss_pred HHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--
Confidence 77777776653 5677777777888888888888876665544 34556666666777777888888887777776
Q ss_pred CCCCHHH----HHHH---------HHHHhccCCHHHHHHHHHHhhhcCCCCC---hhHHHHHHHHHhhcCCHHHHHHHHH
Q 007288 411 VRPDRIV----FMAV---------LTACSHAGLVDEGLKYFKSMNDYNVNPN---KEIYGCVVDLLGRAGRVKEAYELIK 474 (609)
Q Consensus 411 ~~p~~~~----~~~l---------l~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~ 474 (609)
+.||... |..| +......++|.++++..+...+...... ...+..+-.++...|++.+|++...
T Consensus 252 ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 252 LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 4666531 1111 1123446778888888887766543322 3344556677888999999999998
Q ss_pred hC-CCCCC-HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchH
Q 007288 475 SM-PFKPD-ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519 (609)
Q Consensus 475 ~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 519 (609)
+. .+.|| ..++---..+|.-...++.|+.-|+++.+.+|++...-
T Consensus 332 evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 332 EVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred HHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 87 66676 55666666889999999999999999999999775543
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.73 E-value=4.3e-07 Score=85.56 Aligned_cols=146 Identities=14% Similarity=0.093 Sum_probs=82.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHh----hcCC
Q 007288 390 YGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG----RAGR 465 (609)
Q Consensus 390 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~ 465 (609)
+...|++++|+++++.- .+.......+..+.+.++++.|.+.++.|.+.+ .| .+...+..++. -.+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchh
Confidence 34456666665555431 234445555566666666666666666665432 22 22222333222 2235
Q ss_pred HHHHHHHHHhC--CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCh-HHHHHHHHHH
Q 007288 466 VKEAYELIKSM--PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKW-EEFAKFRKIM 542 (609)
Q Consensus 466 ~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m 542 (609)
+.+|..+|+++ ...++..+.+.+..++...|++++|...++++++.+|+++.+...++-+....|+. +.+.+++.++
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 66677777666 23355566666666777777777777777777777777777777777777777776 5566666666
Q ss_pred Hh
Q 007288 543 RG 544 (609)
Q Consensus 543 ~~ 544 (609)
..
T Consensus 263 ~~ 264 (290)
T PF04733_consen 263 KQ 264 (290)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 97
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=9.6e-06 Score=78.75 Aligned_cols=440 Identities=13% Similarity=0.046 Sum_probs=225.7
Q ss_pred HHHHHccCChhHHHHhhccCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCc-chHHHHHHHhhCCCCh
Q 007288 53 IKSYFDEGLIEEARTLFDEMPE---RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNA-FTLSSVLKACKGMKSL 128 (609)
Q Consensus 53 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~ 128 (609)
-++....|+++.|+..|.+... +|-+.|..-..+|+..|++.+|++=-.+-++ +.|+- ..|+..-.++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccH
Confidence 3456678999999999987653 5667788888889999999988876666665 45654 4688888888888999
Q ss_pred HHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCCChhhHHHH-----HHHHHhcCChhhHHHHHH
Q 007288 129 SNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTL-----ITGYAHSGNGYGGLGVFK 203 (609)
Q Consensus 129 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~l-----i~~~~~~g~~~~a~~~~~ 203 (609)
++|..-|..-++.... +...++.|..++.. + ..+.+.|. +...|..+ .+.+...-.+..-++.+.
T Consensus 87 ~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~---~-~~~~~~~~-----~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~ 156 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPS-NKQLKTGLAQAYLE---D-YAADQLFT-----KPYFHEKLANLPLTNYSLSDPAYVKILEIIQ 156 (539)
T ss_pred HHHHHHHHHHhhcCCc-hHHHHHhHHHhhhH---H-HHhhhhcc-----CcHHHHHhhcChhhhhhhccHHHHHHHHHhh
Confidence 9998888777665432 44455556655511 1 11111111 11111111 111111111111111111
Q ss_pred HHHH-CCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChh---HHHHHHHHHHhcCC-HHHHHHHHHhcCCC
Q 007288 204 EMLL-EGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLP---VMNSILDMYCRFDC-LSDANQYFDEMTEK 278 (609)
Q Consensus 204 ~m~~-~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~---~~~~l~~~~~~~g~-~~~A~~~~~~~~~~ 278 (609)
.-.. .+...+ ...++.+.......+.- .....|..+... --.......-..++ .++... ..
T Consensus 157 ~~p~~l~~~l~---d~r~m~a~~~l~~~~~~-----~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~------k~ 222 (539)
T KOG0548|consen 157 KNPTSLKLYLN---DPRLMKADGQLKGVDEL-----LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRV------KE 222 (539)
T ss_pred cCcHhhhcccc---cHHHHHHHHHHhcCccc-----cccccccccCCCCCCcccccCCCCCccchhHHHHHH------HH
Confidence 0000 000000 00111111110000000 000000000000 00000000000000 000000 00
Q ss_pred ChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC------chhH
Q 007288 279 DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG------NLAL 351 (609)
Q Consensus 279 ~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~ 351 (609)
.......+.++..+.. +..|++-+....+.. -+..-++..-.++...|........-....+.|-.. -...
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~ 300 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKA 300 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHH
Confidence 0112233444444444 556666665555432 222223334444555555555544444444333110 0111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCC
Q 007288 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI-VFMAVLTACSHAGL 430 (609)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~ 430 (609)
+..+..+|.+.++++.|...|++...+... -....+....++++.......- +.|... -...=...+.+.|+
T Consensus 301 ~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 301 LARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred HHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccC
Confidence 222445677778888888888886532111 1122333445555555554443 333332 12222556778899
Q ss_pred HHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHhCCChHHHHHHHHHH
Q 007288 431 VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD-ESVWGPLLGACKEHRLPNLGKLAALRV 508 (609)
Q Consensus 431 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 508 (609)
+..|+..|.++++.. +-|...|....-+|.+.|.+..|+.=.+.. ...|+ ...|..-..++....+++.|.+.|.+.
T Consensus 374 y~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999997766 457888888889999999999988876665 34454 345555556677778899999999999
Q ss_pred hccCCCCcchHHHHHHHHHh
Q 007288 509 LDLKPNMMGTYIILSNIYAA 528 (609)
Q Consensus 509 ~~~~p~~~~~~~~l~~~~~~ 528 (609)
++.+|++......+.+++..
T Consensus 453 le~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 453 LELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HhcCchhHHHHHHHHHHHHH
Confidence 99999777666666666554
No 98
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=1.4e-05 Score=71.66 Aligned_cols=283 Identities=10% Similarity=0.049 Sum_probs=184.8
Q ss_pred HhHHHHHHHccCChhHHHHhhccCCCC---CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHH-HHHhhC
Q 007288 49 ATNLIKSYFDEGLIEEARTLFDEMPER---DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSV-LKACKG 124 (609)
Q Consensus 49 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l-l~~~~~ 124 (609)
+++++..+.+..++++|++++....+. +......+...|....++..|-+.|+++-.. .|...-|... ...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 567777788899999999999877653 4556777777888899999999999999874 4555555432 344567
Q ss_pred CCChHHHHHHHHHHHHhCCCCCcchhhHHHHHH--HhcCCCHHHHHHHHccCC-CCChhhHHHHHHHHHhcCChhhHHHH
Q 007288 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVY--ATCCISMDNARLVFNDMK-WKNDVSWTTLITGYAHSGNGYGGLGV 201 (609)
Q Consensus 125 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~g~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~ 201 (609)
.+.+..|..+...|... ++...-..-+.+. -..+ ++..+..+.++.+ +.+..+.+.......+.|+++.|++-
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~-Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEG-DLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccc-cCcchHHHHHhccCCCccchhccchheeeccccHHHHHHH
Confidence 77888888888777542 2222211222222 2345 8888999999988 46777777777777899999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCC-------------Chh---------------HHH
Q 007288 202 FKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGS-------------NLP---------------VMN 253 (609)
Q Consensus 202 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~-------------~~~---------------~~~ 253 (609)
|+...+-|--.....|+..+.. .+.|+.+.|.+...+++++|+.. |+. .+|
T Consensus 167 FqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 9999876544466778776654 46789999999999999987532 211 122
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC-----ChhHHHHHHHHHHhCCchHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhc
Q 007288 254 SILDMYCRFDCLSDANQYFDEMTEK-----DLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLA 328 (609)
Q Consensus 254 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 328 (609)
.-...+.+.|+++.|.+.+..|+-+ |++|...+.-.-....+.+..+-+.-+.+... -...||..++-.||+..
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhH
Confidence 2223445667778888777777642 44544333222222222222232333333221 23456777777777777
Q ss_pred cHHHHHHHHHH
Q 007288 329 ALSCGQQVHAG 339 (609)
Q Consensus 329 ~~~~a~~~~~~ 339 (609)
-++.|-.++.+
T Consensus 325 yf~lAADvLAE 335 (459)
T KOG4340|consen 325 YFDLAADVLAE 335 (459)
T ss_pred HHhHHHHHHhh
Confidence 77766666654
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.69 E-value=0.00059 Score=77.16 Aligned_cols=432 Identities=9% Similarity=-0.033 Sum_probs=227.5
Q ss_pred hhHHHHhhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCC--C-C----cchHHHHHHHhhCC----CChHH
Q 007288 62 IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN--P-N----AFTLSSVLKACKGM----KSLSN 130 (609)
Q Consensus 62 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p-~----~~t~~~ll~~~~~~----~~~~~ 130 (609)
.++..+++..+.-.+..+ -.+...... ...+.++++.+.+.|.- + + ...|+.++..+.+. ...++
T Consensus 264 ~~~~~~~l~~~a~~~~~~-~~l~~~l~~---~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~ 339 (903)
T PRK04841 264 DLETRHFLLRCSVLRSMN-DALIVRVTG---EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQE 339 (903)
T ss_pred CHHHHHHHHHhcccccCC-HHHHHHHcC---CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchH
Confidence 345555555443222222 233344333 33456677777766641 1 1 24566666554322 12223
Q ss_pred HHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCCChhh--HHHHHHHHHhcCChhhHHHHHHHHHHC
Q 007288 131 AALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS--WTTLITGYAHSGNGYGGLGVFKEMLLE 208 (609)
Q Consensus 131 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~ 208 (609)
...++. .....+...| ++.+|.............. ...........|++..+...++.+...
T Consensus 340 ~~~lh~---------------raa~~~~~~g-~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~ 403 (903)
T PRK04841 340 LPELHR---------------AAAEAWLAQG-FPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWE 403 (903)
T ss_pred HHHHHH---------------HHHHHHHHCC-CHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHH
Confidence 333322 2233345555 6666666665554332111 111223344567777766666654221
Q ss_pred CCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCC------CC--hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---
Q 007288 209 GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFG------SN--LPVMNSILDMYCRFDCLSDANQYFDEMTE--- 277 (609)
Q Consensus 209 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~------~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 277 (609)
....+..........+...|+++++...+......--. +. ......+...+...|++++|...+++..+
T Consensus 404 ~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~ 483 (903)
T PRK04841 404 VLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELP 483 (903)
T ss_pred HHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 11112222233344456778888888888776543111 11 11222334455678888888888776532
Q ss_pred -CCh----hHHHHHHHHHHhCC-chHHHHHHHHhHHCCC---CC--CHHhHHHHHHHHHhhccHHHHHHHHHHHHHh---
Q 007288 278 -KDL----ITWNTIIAGYEKSG-SSECLNMFSKMKSERF---SP--NCFTFTSIIAACATLAALSCGQQVHAGIVRR--- 343 (609)
Q Consensus 278 -~~~----~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~---~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 343 (609)
.+. ...+.+...+...| .++|...+.+.....- .+ ...++..+...+...|+++.|...+.+....
T Consensus 484 ~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~ 563 (903)
T PRK04841 484 LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEE 563 (903)
T ss_pred CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 121 23445555566677 8888877777654210 11 1223444555667788888888887765542
Q ss_pred -CCC--C-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC------C--CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC-
Q 007288 344 -GLD--G-NLALANALIDMYAKCGNISDSQKIFSEMSD------R--DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG- 410 (609)
Q Consensus 344 -~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g- 410 (609)
+.. + ....+..+...+...|++++|...+++... + ....+..+...+...|++++|...+.+.....
T Consensus 564 ~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 564 QHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG 643 (903)
T ss_pred hccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 211 1 122344555666777888888877776542 1 12233345556677888888888877775421
Q ss_pred -CCCCHH--HH--HHHHHHHhccCCHHHHHHHHHHhhhcCCCCC---hhHHHHHHHHHhhcCCHHHHHHHHHhC------
Q 007288 411 -VRPDRI--VF--MAVLTACSHAGLVDEGLKYFKSMNDYNVNPN---KEIYGCVVDLLGRAGRVKEAYELIKSM------ 476 (609)
Q Consensus 411 -~~p~~~--~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~------ 476 (609)
...... .. ...+..+...|+.+.|..++........... ...+..+..++...|++++|...+++.
T Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~ 723 (903)
T PRK04841 644 NGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARS 723 (903)
T ss_pred cccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 111100 00 1112334456778888887766533111111 111345566777788888887777765
Q ss_pred -CCCCC-HhhHHHHHHHHHhCCChHHHHHHHHHHhccCC
Q 007288 477 -PFKPD-ESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 477 -~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 513 (609)
+..++ ..+...+..++...|+.++|...+.+++++..
T Consensus 724 ~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 724 LRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred hCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 22111 22344444667788888888888888877544
No 100
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.68 E-value=1.5e-06 Score=82.00 Aligned_cols=154 Identities=13% Similarity=0.133 Sum_probs=103.0
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCH
Q 007288 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH----AGLV 431 (609)
Q Consensus 356 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~ 431 (609)
..++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. ...+
T Consensus 109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhH
Confidence 34456677888887777665 45556666778888888888888888888763 333 334444444432 2368
Q ss_pred HHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCCh-HHHHHHHHHH
Q 007288 432 DEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLP-NLGKLAALRV 508 (609)
Q Consensus 432 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~-~~a~~~~~~~ 508 (609)
.+|..+|+++.+ .+.+++.+.+.+..+....|++++|.+++.+. ...| +..+...++-+....|+. +.+.+.+.++
T Consensus 184 ~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 184 QDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 888888888744 34567788888888888888888888888775 3334 445666666666777766 6677788888
Q ss_pred hccCCCC
Q 007288 509 LDLKPNM 515 (609)
Q Consensus 509 ~~~~p~~ 515 (609)
....|+.
T Consensus 263 ~~~~p~h 269 (290)
T PF04733_consen 263 KQSNPNH 269 (290)
T ss_dssp HHHTTTS
T ss_pred HHhCCCC
Confidence 8888853
No 101
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.67 E-value=2e-06 Score=79.81 Aligned_cols=182 Identities=11% Similarity=0.024 Sum_probs=115.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCc----chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCH-HHHH
Q 007288 348 NLALANALIDMYAKCGNISDSQKIFSEMSD--RDL----VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR-PDR-IVFM 419 (609)
Q Consensus 348 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~-~~~~ 419 (609)
....+..+...+...|++++|...|+++.+ |+. .++..+..++...|++++|...++++.+.... |.. .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 445556667777777888888887777653 221 34566677777778888888888887764211 111 1344
Q ss_pred HHHHHHhcc--------CCHHHHHHHHHHhhhcCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHH
Q 007288 420 AVLTACSHA--------GLVDEGLKYFKSMNDYNVNPNK-EIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490 (609)
Q Consensus 420 ~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 490 (609)
.+..++... |++++|.+.++.+.+.. |+. ..+..+... +...... . .....+..
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~----~~~~~~~---~--------~~~~~~a~ 174 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRM----DYLRNRL---A--------GKELYVAR 174 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHH----HHHHHHH---H--------HHHHHHHH
Confidence 444444433 56777777777775433 222 222111111 0000000 0 01124556
Q ss_pred HHHhCCChHHHHHHHHHHhccCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 491 ACKEHRLPNLGKLAALRVLDLKPNM---MGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 491 ~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
.+.+.|++++|...++++++..|++ +..+..++.++.+.|++++|..+++.+....
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 7889999999999999999987754 4688999999999999999999999887653
No 102
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.66 E-value=4.9e-05 Score=79.08 Aligned_cols=156 Identities=13% Similarity=0.060 Sum_probs=73.2
Q ss_pred HHhHHHHHHHccCChhHHHHhhccCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCC-CCCCcchHHHHHHHhh
Q 007288 48 LATNLIKSYFDEGLIEEARTLFDEMPE---RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE-VNPNAFTLSSVLKACK 123 (609)
Q Consensus 48 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~ 123 (609)
.|+.|.+.|+..-+...|.+.|+..-+ .+..++......|++..+++.|..+.-.--+.. ...-...|...--.+.
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyL 573 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYL 573 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccccc
Confidence 455566666655566666666655443 334455556666666666666665521111110 0000011111222234
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCCChhhHH-H--HHHHHHhcCChhhHHH
Q 007288 124 GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWT-T--LITGYAHSGNGYGGLG 200 (609)
Q Consensus 124 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~~~~~~-~--li~~~~~~g~~~~a~~ 200 (609)
..++...+..-|+...+..+. |...|..+..+|..+| ++..|.++|.+...-++.++- . .....+..|.+++|+.
T Consensus 574 ea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sG-ry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESG-RYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred CccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcC-ceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 445555555555555544333 4555666666666666 666666666554432222211 1 1122334455555555
Q ss_pred HHHHH
Q 007288 201 VFKEM 205 (609)
Q Consensus 201 ~~~~m 205 (609)
.+...
T Consensus 652 ~l~~i 656 (1238)
T KOG1127|consen 652 ALGLI 656 (1238)
T ss_pred HHHHH
Confidence 55544
No 103
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.66 E-value=7.7e-05 Score=74.16 Aligned_cols=192 Identities=10% Similarity=-0.062 Sum_probs=90.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHhcc
Q 007288 355 LIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV-RPDR--IVFMAVLTACSHA 428 (609)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~~~~~ll~~~~~~ 428 (609)
+...+...|++++|...++...+ .+...+..+...+...|++++|...+++...... .|+. ..|..+...+...
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 33444555555555555555442 1233444455555555555555555555544211 1121 1233445555556
Q ss_pred CCHHHHHHHHHHhhhcCC-CCChhHH-H--HHHHHHhhcCCHHHHH------HHHHhC-CCCCCHhhHHHHHHHHHhCCC
Q 007288 429 GLVDEGLKYFKSMNDYNV-NPNKEIY-G--CVVDLLGRAGRVKEAY------ELIKSM-PFKPDESVWGPLLGACKEHRL 497 (609)
Q Consensus 429 ~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~~~A~------~~~~~~-~~~p~~~~~~~l~~~~~~~~~ 497 (609)
|++++|..+++....... .+..... + .++.-+...|....+. ...... +.............++...|+
T Consensus 200 G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 279 (355)
T cd05804 200 GDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGD 279 (355)
T ss_pred CCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCC
Confidence 666666666655532111 1111111 1 1122222223211111 111110 000011111234455667777
Q ss_pred hHHHHHHHHHHhccCC---------CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 498 PNLGKLAALRVLDLKP---------NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 498 ~~~a~~~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
.+.|...++.+....- .........+.++...|++++|.+.+.......
T Consensus 280 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 280 KDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 7777777766644211 124455567778889999999999998887643
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.65 E-value=5.3e-05 Score=85.55 Aligned_cols=323 Identities=9% Similarity=-0.016 Sum_probs=204.6
Q ss_pred HHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CC------hh--HHHHHHHHHH
Q 007288 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE----KD------LI--TWNTIIAGYE 291 (609)
Q Consensus 224 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~------~~--~~~~li~~~~ 291 (609)
....|+++.+...++.+.......+..........+...|++++|...+....+ .+ .. ....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 345667776666665542221122333334555666788999999888876531 11 11 1122223445
Q ss_pred hCC-chHHHHHHHHhHHCCCCCCH----HhHHHHHHHHHhhccHHHHHHHHHHHHHhCC---C--CchhHHHHHHHHHHh
Q 007288 292 KSG-SSECLNMFSKMKSERFSPNC----FTFTSIIAACATLAALSCGQQVHAGIVRRGL---D--GNLALANALIDMYAK 361 (609)
Q Consensus 292 ~~~-~~~a~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~ 361 (609)
..| .++|...+++....-...+. ...+.+...+...|+++.|...+.......- . .....+..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 677 89999999887653111122 2334455566789999999999988764311 1 112345566778889
Q ss_pred cCCHHHHHHHHHhcCC-------CC----cchHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHh
Q 007288 362 CGNISDSQKIFSEMSD-------RD----LVTWTSMMIGYGAHGHGKEAIELFDEMVKS--GVRPD--RIVFMAVLTACS 426 (609)
Q Consensus 362 ~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~~~~~ll~~~~ 426 (609)
.|+++.|...+++... ++ ...+..+...+...|++++|...+++.... ...+. ...+..+.....
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 9999999998877542 11 123444556677789999999999887652 11222 234555666788
Q ss_pred ccCCHHHHHHHHHHhhhcCCCC-ChhHH-----HHHHHHHhhcCCHHHHHHHHHhCCCC--CCH----hhHHHHHHHHHh
Q 007288 427 HAGLVDEGLKYFKSMNDYNVNP-NKEIY-----GCVVDLLGRAGRVKEAYELIKSMPFK--PDE----SVWGPLLGACKE 494 (609)
Q Consensus 427 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~----~~~~~l~~~~~~ 494 (609)
..|++++|.+.+.......... ....+ ...+..+...|+.+.|.+.+...... ... ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8999999999998874321111 11111 11224455689999999998776211 111 113345577889
Q ss_pred CCChHHHHHHHHHHhccCC------CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 495 HRLPNLGKLAALRVLDLKP------NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 495 ~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
.|++++|...++++..... ....++..++.+|.+.|+.++|...+.+..+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999876421 223467778999999999999999999998743
No 105
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.63 E-value=0.00012 Score=72.89 Aligned_cols=193 Identities=12% Similarity=0.047 Sum_probs=109.6
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----Cc--chHHHHHHHH
Q 007288 318 TSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-----DL--VTWTSMMIGY 390 (609)
Q Consensus 318 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~li~~~ 390 (609)
..+...+...|+++.|...++...+.. +.+...+..+..+|...|++++|...++...+- +. ..|..+...+
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 344455667777777777777777654 334556677777788888888888887776631 11 2344567777
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHhccCCHHHHHHH--H-HHhhhcCC-CCChhHHHHHHHHHhh
Q 007288 391 GAHGHGKEAIELFDEMVKSGV-RPDRIVF-M--AVLTACSHAGLVDEGLKY--F-KSMNDYNV-NPNKEIYGCVVDLLGR 462 (609)
Q Consensus 391 ~~~g~~~~A~~~~~~m~~~g~-~p~~~~~-~--~ll~~~~~~~~~~~a~~~--~-~~~~~~~~-~~~~~~~~~l~~~~~~ 462 (609)
...|++++|..++++...... .+..... + .++.-+...|....+.+. + ........ ............++..
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence 888888888888888754321 1111111 1 223333344433333222 1 11111100 1111222246667778
Q ss_pred cCCHHHHHHHHHhCC--CCC---CH----hhHHHHH--HHHHhCCChHHHHHHHHHHhcc
Q 007288 463 AGRVKEAYELIKSMP--FKP---DE----SVWGPLL--GACKEHRLPNLGKLAALRVLDL 511 (609)
Q Consensus 463 ~g~~~~A~~~~~~~~--~~p---~~----~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~ 511 (609)
.|+.++|..+++.+. ... .. .+-..++ -++...|+.+.|.+.+..++..
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888999988887761 111 11 1111222 4467889999999988887664
No 106
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.63 E-value=2.5e-06 Score=75.87 Aligned_cols=120 Identities=9% Similarity=0.092 Sum_probs=97.7
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHH-HHhCCC--hHHH
Q 007288 427 HAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGA-CKEHRL--PNLG 501 (609)
Q Consensus 427 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~~~--~~~a 501 (609)
..++.+++...++...+.+ +.+...|..+...|...|++++|...|++. ...| +...+..+..+ +...|+ .++|
T Consensus 51 ~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred CchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 3566777777777776655 457888888999999999999999999887 4556 45556666665 466676 5899
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 502 KLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 502 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
..+++++++.+|++..++..++..+.+.|++++|+..|+++.+...
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999988654
No 107
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.62 E-value=6.9e-05 Score=78.05 Aligned_cols=449 Identities=12% Similarity=0.018 Sum_probs=226.7
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCC-CCCcchhhHHHHHH
Q 007288 79 SWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGL-EGSIYVENSLMDVY 157 (609)
Q Consensus 79 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~ 157 (609)
.|..|...|+...+..+|...|+...+.+. -|......+...|++..+++.|..+.-..-+... .--...|..+--.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 466666666655566667777766665322 1444556666667777777776666221111110 00111222233334
Q ss_pred HhcCCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHH--HHHHccCCchh
Q 007288 158 ATCCISMDNARLVFNDMKW---KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV--RACASTGWVSF 232 (609)
Q Consensus 158 ~~~g~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll--~~~~~~g~~~~ 232 (609)
.+.+ +...|..-|+.... .|...|..+..+|...|++..|+++|++.... .|+. +|.... ..-+..|.+.+
T Consensus 573 Lea~-n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 573 LEAH-NLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cCcc-chhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHHH
Confidence 4455 66666666665433 35566677777777777777777777766543 3332 222211 22345667777
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHH-------HhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCC--c---hHHHH
Q 007288 233 GKLIHAAVIKHGFGSNLPVMNSILDMY-------CRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG--S---SECLN 300 (609)
Q Consensus 233 a~~~~~~~~~~g~~~~~~~~~~l~~~~-------~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~--~---~~a~~ 300 (609)
+...+..+...- ..-....+.+...+ .-.|-..+|.++|+.-.+. ..+.++...+... + ..|..
T Consensus 649 ald~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~---f~~~l~h~~~~~~~~Wi~asdac~ 724 (1238)
T KOG1127|consen 649 ALDALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES---FIVSLIHSLQSDRLQWIVASDACY 724 (1238)
T ss_pred HHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH---HHHHHHHhhhhhHHHHHHHhHHHH
Confidence 766666655431 11111112222222 2223333333333322110 0011111111111 1 12222
Q ss_pred HHHHhHHCCCCCCHHhHHHHHHHHHhhccH---H---HHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cC----CHH
Q 007288 301 MFSKMKSERFSPNCFTFTSIIAACATLAAL---S---CGQQVHAGIVRRGLDGNLALANALIDMYAK----CG----NIS 366 (609)
Q Consensus 301 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g----~~~ 366 (609)
+|-... .. .|+......+..-....+.. + .+.+.+-.-.+ ...+...+..|+..|.+ +| +..
T Consensus 725 ~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~ 800 (1238)
T KOG1127|consen 725 IFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDAC 800 (1238)
T ss_pred HHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHH
Confidence 222222 11 22222222222212222221 1 01111111111 11223333333333332 12 223
Q ss_pred HHHHHHHhcC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 007288 367 DSQKIFSEMS---DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND 443 (609)
Q Consensus 367 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 443 (609)
.|...+.... ..+..+||.|.-. ...|++.-|...|-+-... .+....+|..+.-.|.+..+++.|...|.....
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 5666666554 3566778777655 5557777777766665553 233455788888888888899999999988866
Q ss_pred cCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHhhHHHHHHHHHhCCChHHHHH----------HHH
Q 007288 444 YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-------PFKPDESVWGPLLGACKEHRLPNLGKL----------AAL 506 (609)
Q Consensus 444 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~----------~~~ 506 (609)
..+ .+...|-.........|+.-++..+|..- +..|+.--|..........|+.++-+. ..+
T Consensus 879 LdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~ 957 (1238)
T KOG1127|consen 879 LDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALS 957 (1238)
T ss_pred cCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHH
Confidence 442 24445544444445667777777777552 334555555555555566666554443 344
Q ss_pred HHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 007288 507 RVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMR 543 (609)
Q Consensus 507 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 543 (609)
+.....|++..+|...+......+.+.+|.++..+..
T Consensus 958 ~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 958 YYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4455678888899999999888888888888877764
No 108
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.59 E-value=3.6e-06 Score=82.34 Aligned_cols=245 Identities=14% Similarity=0.148 Sum_probs=172.4
Q ss_pred HHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhCC-chHHH
Q 007288 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK---DLITWNTIIAGYEKSG-SSECL 299 (609)
Q Consensus 224 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~-~~~a~ 299 (609)
+.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+++..+- |....-.|...|...| -.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 456788888888888888875 667788888888888888888888888887652 5567777778888888 88888
Q ss_pred HHHHHhHHCCCC--------CCHHhHHHHHHHHHhhccHHHHHHHHHHHH-HhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 007288 300 NMFSKMKSERFS--------PNCFTFTSIIAACATLAALSCGQQVHAGIV-RRGLDGNLALANALIDMYAKCGNISDSQK 370 (609)
Q Consensus 300 ~~~~~m~~~~~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 370 (609)
+.+++-+....+ ++..+-.. ........+....++|-++. ..+..+|..+...|.-.|--.|++++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 888877553210 00000000 11222233444455555444 45545788888888888999999999999
Q ss_pred HHHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhhh---
Q 007288 371 IFSEMSD--R-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI-VFMAVLTACSHAGLVDEGLKYFKSMND--- 443 (609)
Q Consensus 371 ~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~--- 443 (609)
.|+.... | |...||.|...++...+.++|+..|++.++ ++|+-+ +...|.-+|...|.+++|...|-....
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 9998873 4 667899999999999999999999999998 678775 555566789999999999888776532
Q ss_pred cCC------CCChhHHHHHHHHHhhcCCHHHHHHHH
Q 007288 444 YNV------NPNKEIYGCVVDLLGRAGRVKEAYELI 473 (609)
Q Consensus 444 ~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~ 473 (609)
.+. .++...|..|=.++.-.++.|-+.+..
T Consensus 530 ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 530 KSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred cccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 111 112345666656666666666554444
No 109
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.58 E-value=1e-05 Score=86.84 Aligned_cols=199 Identities=13% Similarity=0.137 Sum_probs=165.2
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007288 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSD--------RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIV 417 (609)
Q Consensus 346 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 417 (609)
+.....|-..|......+++++|.+++++... .-...|.+++..-...|.-+...++|+++.+. --....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 44456677778888889999999999988873 13356888887777778888999999999883 223458
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHh-hhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHhhHHHHHHHH
Q 007288 418 FMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP---DESVWGPLLGAC 492 (609)
Q Consensus 418 ~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~ 492 (609)
|..|..-|.+.+.+++|.++++.| .+.+ -...+|..+++.+.+..+-+.|..++.+. ..-| ........+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 889999999999999999999999 5555 57788999999999999999999999877 3334 344555566777
Q ss_pred HhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 007288 493 KEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSK 548 (609)
Q Consensus 493 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 548 (609)
.+.|+.+.+..+|+..+.-.|.-...|+.+++.-.+.|+.+.+..+|++....++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999999999999999999999999999999999987764
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.53 E-value=1e-05 Score=81.36 Aligned_cols=197 Identities=16% Similarity=0.150 Sum_probs=160.8
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007288 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLT 423 (609)
Q Consensus 344 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 423 (609)
+.+|--..-..+...+.+.|-...|..+|+++ ..|...|.+|...|+..+|..+..+-.+ -+|+...|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34555566677889999999999999999987 4788889999999999999999998887 4789999999999
Q ss_pred HHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHH
Q 007288 424 ACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLG 501 (609)
Q Consensus 424 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 501 (609)
......-+++|.++.+..... .-..+.....+.++++++.+.|+.- .+.| -..+|-.+.-+..+.++++.|
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 888888899999998876221 1122333344578999999988765 4444 567888888889999999999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCcccCceeEE
Q 007288 502 KLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWI 556 (609)
Q Consensus 502 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 556 (609)
...|.....++|++...|+++..+|.+.|+-.+|...+++..+-+. .+...|-
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~--~~w~iWE 591 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY--QHWQIWE 591 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC--CCCeeee
Confidence 9999999999999999999999999999999999999999988663 3444443
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.52 E-value=3.6e-06 Score=70.71 Aligned_cols=121 Identities=11% Similarity=-0.049 Sum_probs=75.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 007288 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP 480 (609)
Q Consensus 402 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 480 (609)
++++..+ +.|+. +..+...+...|++++|...|+.+.... +.+...+..+..++.+.|++++|+..|++. ...|
T Consensus 15 ~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 15 ILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4444444 23443 3345556667777777777777765544 235666666777777777777777777666 3334
Q ss_pred -CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007288 481 -DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527 (609)
Q Consensus 481 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 527 (609)
+...+..+..++...|+.++|...++++++..|+++..+...+.+..
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 45566666666777777777777777777777776666666555543
No 112
>PF12854 PPR_1: PPR repeat
Probab=98.52 E-value=1.6e-07 Score=56.01 Aligned_cols=33 Identities=30% Similarity=0.635 Sum_probs=23.2
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 007288 244 GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276 (609)
Q Consensus 244 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 276 (609)
|+.||..+|++||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777777663
No 113
>PLN02789 farnesyltranstransferase
Probab=98.52 E-value=6.5e-05 Score=71.86 Aligned_cols=213 Identities=12% Similarity=0.126 Sum_probs=134.1
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCH--HHHHH
Q 007288 328 AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG-NISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHG--KEAIE 401 (609)
Q Consensus 328 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~ 401 (609)
+..+.|..+..++++.. +-+..+++.-..++.+.| ++++++..++.+.+ .+..+|+.....+.+.|+. ++++.
T Consensus 51 e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 51 ERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 33444444444444332 112223333333344444 45667776666653 2334565554445555542 66778
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc---CCH----HHHHHHHH
Q 007288 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA---GRV----KEAYELIK 474 (609)
Q Consensus 402 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~ 474 (609)
+++++.+.. .-|..+|......+...|+++++++.++++.+.++. |...|+.....+.+. |.. +++++...
T Consensus 130 ~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 130 FTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 888887743 235567887777788888888888888888776644 566666666555444 222 45666664
Q ss_pred hC-CCCC-CHhhHHHHHHHHHhC----CChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC------------------
Q 007288 475 SM-PFKP-DESVWGPLLGACKEH----RLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEG------------------ 530 (609)
Q Consensus 475 ~~-~~~p-~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------ 530 (609)
++ ...| |...|+.+...+... ++..+|...+.++...+|.+..++..|++.|....
T Consensus 208 ~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 287 (320)
T PLN02789 208 DAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELS 287 (320)
T ss_pred HHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccc
Confidence 43 5555 567888888887763 34567888888888889988999999999998743
Q ss_pred ChHHHHHHHHHHH
Q 007288 531 KWEEFAKFRKIMR 543 (609)
Q Consensus 531 ~~~~A~~~~~~m~ 543 (609)
..++|..+++.+.
T Consensus 288 ~~~~a~~~~~~l~ 300 (320)
T PLN02789 288 DSTLAQAVCSELE 300 (320)
T ss_pred cHHHHHHHHHHHH
Confidence 2367888888884
No 114
>PF12854 PPR_1: PPR repeat
Probab=98.49 E-value=2.2e-07 Score=55.34 Aligned_cols=32 Identities=31% Similarity=0.661 Sum_probs=16.4
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007288 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441 (609)
Q Consensus 410 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 441 (609)
|+.||..||+.||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555544
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.44 E-value=3.7e-05 Score=77.52 Aligned_cols=215 Identities=13% Similarity=0.148 Sum_probs=176.9
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHH
Q 007288 245 FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAA 323 (609)
Q Consensus 245 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 323 (609)
++|-...-..+...+.+.|-...|..+|+++. .|..+|.+|...| ..+|..+..+..+ -+||...|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 45555566778889999999999999999864 6888999999999 8999888888776 47899999999888
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCHHHHH
Q 007288 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR---DLVTWTSMMIGYGAHGHGKEAI 400 (609)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~ 400 (609)
.....-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+- -..+|-.+..+..+.+++..|.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 88877888888888765432 1122233334578999999999877643 4468888888889999999999
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007288 401 ELFDEMVKSGVRPDR-IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476 (609)
Q Consensus 401 ~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 476 (609)
+.|..-.. ..||. ..|+.+-.+|.+.++-.+|...+++..+.+ .-+..+|...+-...+.|.+++|++.+.++
T Consensus 540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99999887 56766 499999999999999999999999998888 446777888888889999999999999888
No 116
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.44 E-value=1.8e-05 Score=83.55 Aligned_cols=206 Identities=9% Similarity=-0.001 Sum_probs=135.8
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHH
Q 007288 379 DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI-VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVV 457 (609)
Q Consensus 379 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 457 (609)
++..+..|.....+.|.+++|..+++...+ +.|+.. ....+...+.+.+++++|....++...... -+......+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHHHH
Confidence 466777788888888888888888888887 567665 666777888888888888888888876552 3566677788
Q ss_pred HHHhhcCCHHHHHHHHHhCC-CCCC-HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHH
Q 007288 458 DLLGRAGRVKEAYELIKSMP-FKPD-ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEF 535 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 535 (609)
.++...|++++|.++|+++- ..|+ ...+.++..++...|+.++|...|+++++..-+-...|+.++ ++.+.-
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ 235 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLNAD 235 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHHHH
Confidence 88888888888888888882 3343 667777888888888888888888888886543334444332 223333
Q ss_pred HHHHHHHHhCCCcccCceeEEEeC----------------------CEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHcC
Q 007288 536 AKFRKIMRGMGSKKEVGMSWIEVR----------------------DKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETA 593 (609)
Q Consensus 536 ~~~~~~m~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g 593 (609)
..+++++.-.+......++.+.+. +++ .++......+-++. .+..|...+...+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rI-l~vi~sl~~GGAEr---~~~~La~~l~~~~ 311 (694)
T PRK15179 236 LAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRRNAEYDAGPESFVGPV-LMINGSLGAGGAER---QFVNTAVALQSAI 311 (694)
T ss_pred HHHHHHcCcccccCCCceeeeeHHHHHHHHhhcCcccccCCCCCCcceE-EEEeCCCCCCcHHH---HHHHHHHHHHhcc
Confidence 445555543333222222211111 111 12333333344443 4678888888888
Q ss_pred cccC
Q 007288 594 YEPD 597 (609)
Q Consensus 594 ~~pd 597 (609)
+.|+
T Consensus 312 ~~~~ 315 (694)
T PRK15179 312 QQGQ 315 (694)
T ss_pred cCcc
Confidence 7666
No 117
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.44 E-value=3.1e-06 Score=71.06 Aligned_cols=108 Identities=10% Similarity=-0.111 Sum_probs=91.8
Q ss_pred HHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCC
Q 007288 436 KYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 513 (609)
.+++...+. .|+ .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...++++++++|
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 445555442 243 3556788889999999999999987 4555 677888888999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 514 NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 514 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
+++..+..++.++...|++++|+..+++..+..+
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999988544
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.42 E-value=3.3e-05 Score=68.67 Aligned_cols=156 Identities=11% Similarity=0.124 Sum_probs=117.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 007288 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434 (609)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 434 (609)
-+-.|...|+++.+....+.+..+.. .+...++.+++...++...+.. +.|...|..+...|...|++++|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPLH--------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCccc--------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 34567788888877655544433210 1223567788888888877753 45667899999999999999999
Q ss_pred HHHHHHhhhcCCCCChhHHHHHHHHH-hhcCC--HHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHh
Q 007288 435 LKYFKSMNDYNVNPNKEIYGCVVDLL-GRAGR--VKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVL 509 (609)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 509 (609)
...|++..+... -+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+.+.|++++|+..+++++
T Consensus 93 ~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 93 LLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999977653 3677888888864 67777 59999999988 5556 45677777788999999999999999999
Q ss_pred ccCCCCcchHH
Q 007288 510 DLKPNMMGTYI 520 (609)
Q Consensus 510 ~~~p~~~~~~~ 520 (609)
+..|++..-+.
T Consensus 172 ~l~~~~~~r~~ 182 (198)
T PRK10370 172 DLNSPRVNRTQ 182 (198)
T ss_pred hhCCCCccHHH
Confidence 99886655443
No 119
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.32 E-value=0.0043 Score=60.91 Aligned_cols=209 Identities=12% Similarity=0.065 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHhcCC----CCcchHHHHHHHHHhcCCHHHHHHHH
Q 007288 331 SCGQQVHAGIVRRGLDGNLALANALIDMYAKCG---NISDSQKIFSEMSD----RDLVTWTSMMIGYGAHGHGKEAIELF 403 (609)
Q Consensus 331 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~ 403 (609)
+++..+++.....-...+..+|..+.+---..- ..+.....++++.. .-..+|...+..-.+......|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 444455554443322333444443332211111 24444455555542 33457888888888888999999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHh-hhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC---CC
Q 007288 404 DEMVKSGVRP-DRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM---PF 478 (609)
Q Consensus 404 ~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~ 478 (609)
.+..+.+..+ ....+++++..+|. ++.+.|.++|+.= ++.| .+..--...++-+.+.++-..|..+|++. ++
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999988887 66788889987775 6778999999875 4433 34455567888899999999999999988 23
Q ss_pred CC--CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC----cchHHHHHHHHHhcCChHHHHHHHHHH
Q 007288 479 KP--DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM----MGTYIILSNIYAAEGKWEEFAKFRKIM 542 (609)
Q Consensus 479 ~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m 542 (609)
.| ....|..++.--..-|+...+..+-++.....|.+ ...-..+++.|.-.+.+..-..-++.+
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 33 35789999999999999999999888876655522 224455677777777765444444333
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.32 E-value=5.7e-05 Score=67.03 Aligned_cols=126 Identities=17% Similarity=0.088 Sum_probs=77.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhCC
Q 007288 419 MAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM--PFKPDESVWGPLLGACKEHR 496 (609)
Q Consensus 419 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~ 496 (609)
..+-..+...|+-+....+...... ..+.|......++....+.|++.+|...+.+. ...+|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~-~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI-AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc-cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 4444555556665555555555422 12234445555666666677777777666666 33446666666666667777
Q ss_pred ChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 497 LPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 497 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
+++.|...|.+++++.|+++..++.++-.|.-.|+.+.|..++......
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 7777777777777777766666777777777777777777666666543
No 121
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.29 E-value=2.6e-05 Score=64.37 Aligned_cols=120 Identities=13% Similarity=0.029 Sum_probs=97.6
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007288 449 NKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 526 (609)
+....-.+...+...|++++|..+|+-+ ...| +..-|-.|..+|...|++++|+..|.++..++|+++..+..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3444556677788999999999999988 3445 5667888889999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCCCcccCceeEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHH
Q 007288 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNE 591 (609)
Q Consensus 527 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~ 591 (609)
...|+.+.|.+.|+..+... + .+|+..++.++.+..+..|.+
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~---------------------~--~~~~~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC---------------------G--EVSEHQILRQRAEKMLQQLSD 155 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh---------------------c--cChhHHHHHHHHHHHHHHhhc
Confidence 99999999999999987632 1 345666666666666665543
No 122
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.28 E-value=0.00031 Score=68.02 Aligned_cols=236 Identities=16% Similarity=0.122 Sum_probs=145.3
Q ss_pred HHHHHHhCC--chHHHHHHHHhHH---CCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCCchhHHHHHHHH
Q 007288 286 IIAGYEKSG--SSECLNMFSKMKS---ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR--GLDGNLALANALIDM 358 (609)
Q Consensus 286 li~~~~~~~--~~~a~~~~~~m~~---~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~ 358 (609)
-+..+.+.| .....+.|+++.. .+-.|+....+. =.-..++..+...-+.+... .-.|+...+...+..
T Consensus 208 Gi~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~TH----Plp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~ 283 (484)
T COG4783 208 GITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTH----PLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRA 283 (484)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcC----CCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHH
Confidence 345566777 5556677777763 333333322110 00111222222222222211 123444455555544
Q ss_pred HHhcCCHHHHHHHHHhcCC-CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHH
Q 007288 359 YAKCGNISDSQKIFSEMSD-RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR-IVFMAVLTACSHAGLVDEGLK 436 (609)
Q Consensus 359 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~ 436 (609)
.........+..++....+ .....+......+...|++++|+..++.++.. .|+. .........+.+.++.++|.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e 361 (484)
T COG4783 284 KYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIE 361 (484)
T ss_pred HhccccccchHHHHHHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 4333333333333333333 22233333444455778899999999998875 4544 455555677889999999999
Q ss_pred HHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCC
Q 007288 437 YFKSMNDYNVNPN-KEIYGCVVDLLGRAGRVKEAYELIKSM--PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 437 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 513 (609)
.++++.... |+ ....-.+.++|.+.|++.+|+.++++. ...-|...|..|..+|...|+..++...
T Consensus 362 ~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A--------- 430 (484)
T COG4783 362 RLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA--------- 430 (484)
T ss_pred HHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH---------
Confidence 999987643 44 555667888999999999999998887 3334678888888999999988766653
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 514 NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 514 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
.++.|...|+|++|+..+....++.
T Consensus 431 --------~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 431 --------RAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred --------HHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 4567788899999999998888754
No 123
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.28 E-value=0.0053 Score=60.31 Aligned_cols=129 Identities=12% Similarity=0.113 Sum_probs=86.0
Q ss_pred CChhHHhHHHHHHHccCChhHHHHhhccCCC--C-CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHH
Q 007288 44 GPSILATNLIKSYFDEGLIEEARTLFDEMPE--R-DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLK 120 (609)
Q Consensus 44 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 120 (609)
-|+..|+.||+-+..+ .++++++.++.+.. | ....|..-|..-...++++....+|.+....-. +..-|...|.
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl~ 94 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYLS 94 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHHH
Confidence 4788999999988888 99999999999875 3 456799999999999999999999999887544 4444554444
Q ss_pred HhhC-CCChH----HHHHHHHHHH-HhCCCC-CcchhhHHHHHHH---------hcCCCHHHHHHHHccCCC
Q 007288 121 ACKG-MKSLS----NAALVHGMAI-KEGLEG-SIYVENSLMDVYA---------TCCISMDNARLVFNDMKW 176 (609)
Q Consensus 121 ~~~~-~~~~~----~a~~~~~~~~-~~~~~~-~~~~~~~ll~~~~---------~~g~~~~~A~~~~~~~~~ 176 (609)
--.+ .++.. ...+.++... +.|.++ +..+|+..+..+- ... +++..+++++++..
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~Q-RI~~vRriYqral~ 165 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQ-RITAVRRIYQRALV 165 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHH-HHHHHHHHHHHHhc
Confidence 3221 12222 2233344333 346543 3345666665443 223 56677788877654
No 124
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.27 E-value=0.0088 Score=62.43 Aligned_cols=65 Identities=14% Similarity=0.102 Sum_probs=49.3
Q ss_pred HHHHHHHHHhCCChH---HHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 007288 485 WGPLLGACKEHRLPN---LGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKK 549 (609)
Q Consensus 485 ~~~l~~~~~~~~~~~---~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 549 (609)
.+.|+..+.+.++.. +|+-+++..+...|.|..+-..++.+|.-.|-+..|.++++.+-=+.+..
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~ 506 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQT 506 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhh
Confidence 455667788777765 56777777788888888888888888888888888888888875555543
No 125
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.25 E-value=5.1e-05 Score=74.04 Aligned_cols=124 Identities=15% Similarity=0.167 Sum_probs=102.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHH
Q 007288 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACK 493 (609)
Q Consensus 416 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 493 (609)
.....|+..+...++++.|+.+++++.+.. |+ ....++..+...++-.+|++++++. ...| +..........+.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345667777788899999999999997654 44 3445788888889999999999887 3344 4444444457799
Q ss_pred hCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 007288 494 EHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMR 543 (609)
Q Consensus 494 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 543 (609)
+.++++.|+.+.+++.++.|++..+|..|+.+|.+.|++++|+..++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999998875
No 126
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.23 E-value=0.0001 Score=68.40 Aligned_cols=181 Identities=14% Similarity=0.061 Sum_probs=123.7
Q ss_pred CHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-cc---hHH
Q 007288 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD-G-NLALANALIDMYAKCGNISDSQKIFSEMSD--RD-LV---TWT 384 (609)
Q Consensus 313 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~---~~~ 384 (609)
....+......+...|+++.|...++++...... + ....+..+..+|.+.|++++|...++.+.+ |+ .. ++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4556777888889999999999999998876422 1 124667788999999999999999999874 32 22 455
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHH
Q 007288 385 SMMIGYGAH--------GHGKEAIELFDEMVKSGVRPDRI-VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455 (609)
Q Consensus 385 ~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 455 (609)
.+..++... |++++|.+.|+.+.+. .|+.. ....+.... . .. .... .....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---~~------~~~~--------~~~~~ 171 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---LR------NRLA--------GKELY 171 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---HH------HHHH--------HHHHH
Confidence 556666654 7889999999999875 45432 222221110 0 00 0000 01124
Q ss_pred HHHHHhhcCCHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCC
Q 007288 456 VVDLLGRAGRVKEAYELIKSM----PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 513 (609)
+...+.+.|++++|+..+++. +..| ....+..+..++.+.|++++|...++.+....|
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 566788889999988888777 2223 245777888888899999999888877766554
No 127
>PLN02789 farnesyltranstransferase
Probab=98.22 E-value=0.00024 Score=68.06 Aligned_cols=188 Identities=9% Similarity=0.102 Sum_probs=139.4
Q ss_pred HHHhcCCHHHHHHHHHhcCCC---CcchHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC--H
Q 007288 358 MYAKCGNISDSQKIFSEMSDR---DLVTWTSMMIGYGAHG-HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL--V 431 (609)
Q Consensus 358 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--~ 431 (609)
++...++.++|+.+.+.+.+. +..+|+....++...| ++++++..++++.+.. +-+..+|+.-...+.+.|+ .
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhh
Confidence 344567888999999888753 3345666666666677 6799999999999853 2244466665555566665 3
Q ss_pred HHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhC---CC----hHHHH
Q 007288 432 DEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEH---RL----PNLGK 502 (609)
Q Consensus 432 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~----~~~a~ 502 (609)
++++.+++.+.+.+. -+..+|+....++.+.|+++++++.++++ ...| +...|+....++.+. |. .+.+.
T Consensus 125 ~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 125 NKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 678899988877663 37889999999999999999999999998 3333 566777766555544 22 24677
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 007288 503 LAALRVLDLKPNMMGTYIILSNIYAA----EGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 503 ~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 547 (609)
....+++..+|+|..+|..+..++.. .++..+|.+++.+..+.++
T Consensus 204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS 252 (320)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC
Confidence 88889999999999999999999988 3456778888888766443
No 128
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.21 E-value=2.2e-05 Score=65.53 Aligned_cols=97 Identities=20% Similarity=0.183 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007288 450 KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 527 (609)
......+...+...|++++|.+.++.+ ...| +...|..+..++...|+++.|...++++++..|.++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344555666777777777777777776 3334 45566666677777888888888888888888888888888888888
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 007288 528 AEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 528 ~~g~~~~A~~~~~~m~~~~ 546 (609)
..|++++|...+++..+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 97 ALGEPESALKALDLAIEIC 115 (135)
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 8888888888888777643
No 129
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.19 E-value=0.0007 Score=73.40 Aligned_cols=197 Identities=11% Similarity=0.149 Sum_probs=91.7
Q ss_pred HHHHHHHHHccCCchhHHHHHHHHHHh-CCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhHHHHHHHHH
Q 007288 217 FSIAVRACASTGWVSFGKLIHAAVIKH-GFGS---NLPVMNSILDMYCRFDCLSDANQYFDEMTEK--DLITWNTIIAGY 290 (609)
Q Consensus 217 ~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~ 290 (609)
|..-|......++.+.|.++.++++.. ++.- -..+|.++++.-..-|.-+...++|++..+- ....|..|...|
T Consensus 1461 WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy 1540 (1710)
T KOG1070|consen 1461 WIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIY 1540 (1710)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 344444444555555555555554432 1110 1224444444444444445555555554431 123344555555
Q ss_pred HhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHH
Q 007288 291 EKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD-GNLALANALIDMYAKCGNISDS 368 (609)
Q Consensus 291 ~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A 368 (609)
.+.+ .++|.++++.|.+. ..-....|...+..+.+.++-+.|..++.++.+.-.. -........+.+-.+.|+.+++
T Consensus 1541 ~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRG 1619 (1710)
T KOG1070|consen 1541 EKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERG 1619 (1710)
T ss_pred HHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhh
Confidence 5555 55555555555543 1123344444555555555555555555554443111 1223333444444555555555
Q ss_pred HHHHHhcCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007288 369 QKIFSEMSDR---DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414 (609)
Q Consensus 369 ~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 414 (609)
..+|+..... -...|+..|+.-.++|+.+.+..+|++.+..++.|-
T Consensus 1620 RtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1620 RTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred HHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 5555554421 234455555555555555555555555555554443
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.19 E-value=0.00021 Score=76.46 Aligned_cols=213 Identities=11% Similarity=0.112 Sum_probs=134.0
Q ss_pred ChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHH-HHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 007288 279 DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTS-IIAACATLAALSCGQQVHAGIVRRGLDGNLALANALI 356 (609)
Q Consensus 279 ~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 356 (609)
+...|..|+..+...+ +++|.++.+...+. .|+...+.. +...+.+.++...+..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 5567888888887777 88888888866553 455443322 22234444554444333 222
Q ss_pred HHHHhcCCHHHHHHHHHhcCC--CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 007288 357 DMYAKCGNISDSQKIFSEMSD--RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434 (609)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 434 (609)
.......++.-...+...+.. .+...+..+..+|-+.|+.++|..+|+++++.. .-|..+.+.+.-.|+.. ++++|
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 222233333222223323322 123456667778888888888888888888854 33556777777777777 88888
Q ss_pred HHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----------------------CCCCCHhhHHHHHHHH
Q 007288 435 LKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM----------------------PFKPDESVWGPLLGAC 492 (609)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------------------~~~p~~~~~~~l~~~~ 492 (609)
.+++.+.... +...+++..+.++|.++ +..--..++.-+...|
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y 233 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPY 233 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 8888777443 22233333333333333 2222344555556778
Q ss_pred HhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007288 493 KEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527 (609)
Q Consensus 493 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 527 (609)
...++++++..+++.+++.+|.|..+...++..|.
T Consensus 234 ~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 234 KALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 89999999999999999999999999888988887
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.00066 Score=60.41 Aligned_cols=152 Identities=11% Similarity=0.061 Sum_probs=79.4
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCH
Q 007288 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH----AGLV 431 (609)
Q Consensus 356 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~ 431 (609)
...|++.|++++|++...... +......=+..+.+..+.+-|.+.+++|.+ --+..|.+.|..++.+ .+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---ided~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQ---IDEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHhccchhh
Confidence 344556666666666655522 222222223334455566666666666665 1244455555555443 2346
Q ss_pred HHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhCCCh-HHHHHHHHHH
Q 007288 432 DEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM--PFKPDESVWGPLLGACKEHRLP-NLGKLAALRV 508 (609)
Q Consensus 432 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~ 508 (609)
..|.-+|++|.+ ..+|+..+.+....++...|++++|..++++. ....+..+...++-+....|.. +.-.+...++
T Consensus 190 qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 190 QDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred hhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 666666666632 23456666666666666666666666666665 2223444544455444444433 3334455555
Q ss_pred hccCC
Q 007288 509 LDLKP 513 (609)
Q Consensus 509 ~~~~p 513 (609)
....|
T Consensus 269 k~~~p 273 (299)
T KOG3081|consen 269 KLSHP 273 (299)
T ss_pred HhcCC
Confidence 55555
No 132
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.17 E-value=0.00031 Score=62.48 Aligned_cols=153 Identities=12% Similarity=0.087 Sum_probs=90.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCC
Q 007288 386 MMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465 (609)
Q Consensus 386 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 465 (609)
+-..+...|+-+....+....... ..-|.......+......|++.+|+..+++..... ++|...|+.+.-+|.+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccC
Confidence 344455555555555555543321 12233344446666666667777776666665433 4566666666666777777
Q ss_pred HHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 007288 466 VKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRK 540 (609)
Q Consensus 466 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (609)
+++|..-|.+. .+.| +....+.+...+.-.|+.+.|..++.......+.+...-..|+.+....|++++|..+..
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 77766666555 3333 344555666666666677777776666666666666666667777777777776665543
No 133
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.14 E-value=0.00045 Score=73.15 Aligned_cols=143 Identities=7% Similarity=0.037 Sum_probs=117.6
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHH
Q 007288 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--R-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR-IVFM 419 (609)
Q Consensus 344 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~ 419 (609)
..+.+...+..|..+..+.|.+++|+.+++.+.+ | +......+..++.+.+++++|+..+++.... .|+. ....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 3456688889999999999999999999999984 5 4456777889999999999999999999985 5655 4667
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHhhHHHHH
Q 007288 420 AVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM--PFKPDESVWGPLL 489 (609)
Q Consensus 420 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~ 489 (609)
.+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++. ...|-...|+.++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 77788999999999999999997733 335788889999999999999999999988 3344455555444
No 134
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.13 E-value=4.5e-06 Score=50.64 Aligned_cols=35 Identities=23% Similarity=0.486 Sum_probs=30.7
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCc
Q 007288 78 VSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNA 112 (609)
Q Consensus 78 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 112 (609)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999988874
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.10 E-value=0.00014 Score=71.01 Aligned_cols=128 Identities=14% Similarity=0.136 Sum_probs=103.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 007288 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLV 431 (609)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 431 (609)
..+|+..+...++++.|..+|+++.+.++.....++..+...++-.+|++++++..+.. +-+......-...|.+.+++
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence 34566666678899999999999988777777778888888889999999999998752 33555666666778899999
Q ss_pred HHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 007288 432 DEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481 (609)
Q Consensus 432 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~ 481 (609)
+.|+.+.+++.+.. +-+..+|..|..+|...|+++.|+-.++.+|..|.
T Consensus 251 ~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~ 299 (395)
T PF09295_consen 251 ELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPMLTY 299 (395)
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCC
Confidence 99999999997744 33566999999999999999999999999976553
No 136
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.07 E-value=6.9e-06 Score=49.78 Aligned_cols=34 Identities=41% Similarity=0.659 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC
Q 007288 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMN 213 (609)
Q Consensus 180 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 213 (609)
.+||++|.+|++.|++++|.++|++|...|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688899999999999999999999988888887
No 137
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.0042 Score=55.49 Aligned_cols=148 Identities=12% Similarity=0.007 Sum_probs=103.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHh----hc
Q 007288 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG----RA 463 (609)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 463 (609)
..|+..|++++|++..+... . ......=...+.+..+.+-|.+.++.|.+.. +..+.+.|..++. -.
T Consensus 116 ~i~~~~~~~deAl~~~~~~~----~--lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE----N--LEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc----h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccc
Confidence 45778888888888777621 1 2222222334556677888888888886633 4556665555554 34
Q ss_pred CCHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHH-HHHH
Q 007288 464 GRVKEAYELIKSM--PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFA-KFRK 540 (609)
Q Consensus 464 g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~ 540 (609)
+...+|.-+|+++ +..|+..+.+....++...|++++|..+++.++..+++++.+...++-.-...|+-.++. +.+.
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 5688888888888 366777777777788888888888888888888888888888888777777777775554 4455
Q ss_pred HHHh
Q 007288 541 IMRG 544 (609)
Q Consensus 541 ~m~~ 544 (609)
+++.
T Consensus 267 QLk~ 270 (299)
T KOG3081|consen 267 QLKL 270 (299)
T ss_pred HHHh
Confidence 5554
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.07 E-value=0.00056 Score=66.28 Aligned_cols=178 Identities=19% Similarity=0.094 Sum_probs=127.8
Q ss_pred CCHHHHHHHHHhcCC------CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 007288 363 GNISDSQKIFSEMSD------RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436 (609)
Q Consensus 363 g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 436 (609)
.++.++...-+.+.. ++...+...+.+......-..+..++. +... ..-...-|..-+ .+...|.+++|+.
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~-~~~~aa~YG~A~-~~~~~~~~d~A~~ 327 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLA-KRSK-RGGLAAQYGRAL-QTYLAGQYDEALK 327 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHH-HHhC-ccchHHHHHHHH-HHHHhcccchHHH
Confidence 345556656666653 344455555554433322222222222 2222 111222343333 3456789999999
Q ss_pred HHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC
Q 007288 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD-ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
.++.+.+. .+-|+.......+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|+..+|+..++....-+|+
T Consensus 328 ~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~ 406 (484)
T COG4783 328 LLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE 406 (484)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence 99998663 3456777778889999999999999999998 56676 556667779999999999999999999999999
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 515 MMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
++..|..|+.+|...|+..+|....-+...
T Consensus 407 dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 407 DPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred CchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999999999999999999999998877765
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.05 E-value=7e-06 Score=49.34 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=26.0
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC
Q 007288 78 VSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110 (609)
Q Consensus 78 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 110 (609)
.+||.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 567888888888888888888888888777776
No 140
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.00081 Score=59.40 Aligned_cols=187 Identities=17% Similarity=0.180 Sum_probs=84.4
Q ss_pred hccHHHHHHHHHHHHH---hC-CCCchh-HHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHH---HHHHHhcCCHHH
Q 007288 327 LAALSCGQQVHAGIVR---RG-LDGNLA-LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSM---MIGYGAHGHGKE 398 (609)
Q Consensus 327 ~~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~ 398 (609)
..+.++..+++..+.. +| ..++.. +|.-++-+...+|+.+.|..+++.+...-+.++... ..-+-..|++++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 3456666666665542 22 233332 223333444445555555555555443111111111 111233455555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 007288 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-P 477 (609)
Q Consensus 399 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 477 (609)
|+++++.+.+.. +.|..++.-=+...-..|+.-+|++-+....+ .+..|...|.-+.+.|...|++++|.-.++++ -
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 555555555543 22333444333344444444455554444432 13445555555555555555555555555555 2
Q ss_pred CCC-CHhhHHHHHHHHHhC---CChHHHHHHHHHHhccCCCC
Q 007288 478 FKP-DESVWGPLLGACKEH---RLPNLGKLAALRVLDLKPNM 515 (609)
Q Consensus 478 ~~p-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~p~~ 515 (609)
+.| +...+..+...+.-. .+.+.+...|.+++++.|.+
T Consensus 183 ~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 183 IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 233 222333333332221 24445555555555555533
No 141
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.03 E-value=0.0055 Score=65.94 Aligned_cols=30 Identities=17% Similarity=0.101 Sum_probs=19.4
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 007288 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLL 207 (609)
Q Consensus 178 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 207 (609)
+...|..|+..+...+++++|.++.+...+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~ 59 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLK 59 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 455666666766667777777776665444
No 142
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.01 E-value=0.029 Score=58.74 Aligned_cols=481 Identities=11% Similarity=0.034 Sum_probs=245.5
Q ss_pred HhHHHHHH--HccCChhHHHHhhccCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhh
Q 007288 49 ATNLIKSY--FDEGLIEEARTLFDEMPE---RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACK 123 (609)
Q Consensus 49 ~~~li~~~--~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 123 (609)
|..++.++ .|.|+.++|..+++.... .|..+...+-..|...++.++|..+|++.... .|+..-...+..+|.
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayv 121 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYV 121 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHH
Confidence 55555554 478999999988887653 36677888888889999999999999998764 567777777888888
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCC---------HHHHHHHHccCCCCC-----hhhHHHHHHHH
Q 007288 124 GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS---------MDNARLVFNDMKWKN-----DVSWTTLITGY 189 (609)
Q Consensus 124 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~---------~~~A~~~~~~~~~~~-----~~~~~~li~~~ 189 (609)
+.+++.+-.++--++-+.-++ +.+.+=++++.+...-.. ..-|.+.++.+.+.+ ..-...-...+
T Consensus 122 R~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL 200 (932)
T KOG2053|consen 122 REKSYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLIL 200 (932)
T ss_pred HHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHH
Confidence 888887766665555554333 333333344444332111 223444444444332 11122223444
Q ss_pred HhcCChhhHHHHH-HHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHH--------
Q 007288 190 AHSGNGYGGLGVF-KEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYC-------- 260 (609)
Q Consensus 190 ~~~g~~~~a~~~~-~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~-------- 260 (609)
-..|++++|++++ ....+.-..-+...-+.-+..+...+++.+..++-.++...| ..| |...++.+.
T Consensus 201 ~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~-~Dd---y~~~~~sv~klLe~~~~ 276 (932)
T KOG2053|consen 201 ELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG-NDD---YKIYTDSVFKLLELLNK 276 (932)
T ss_pred HhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC-Ccc---hHHHHHHHHHHHHhccc
Confidence 5577888888888 333333333344444556666777888888888888887776 222 333222211
Q ss_pred --------hcCCHHHHHHHHHhcCCC-ChhHHHHHHHHHH---hCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhh
Q 007288 261 --------RFDCLSDANQYFDEMTEK-DLITWNTIIAGYE---KSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATL 327 (609)
Q Consensus 261 --------~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~---~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 327 (609)
..+..+...+..++.... ...+|-+-+.... .-| .+++...|-+-. |-.| .|..=+..+...
T Consensus 277 ~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kf--g~kp---cc~~Dl~~yl~~ 351 (932)
T KOG2053|consen 277 EPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKF--GDKP---CCAIDLNHYLGH 351 (932)
T ss_pred ccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHh--CCCc---HhHhhHHHhhcc
Confidence 112223332222222211 1112222222222 223 444433322211 1111 111111111111
Q ss_pred ccHHHHHHHHHHHHHhCCC--Cch---hHHHHHHHHHHhcCC-----HHHHHHHHHhc----CC---------CCc----
Q 007288 328 AALSCGQQVHAGIVRRGLD--GNL---ALANALIDMYAKCGN-----ISDSQKIFSEM----SD---------RDL---- 380 (609)
Q Consensus 328 ~~~~~a~~~~~~~~~~~~~--~~~---~~~~~l~~~~~~~g~-----~~~A~~~~~~~----~~---------~~~---- 380 (609)
=..++-..++......... .|. ..+...+..-.-.|. -+.-..++.++ .. |+.
T Consensus 352 l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g 431 (932)
T KOG2053|consen 352 LNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFG 431 (932)
T ss_pred CCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccH
Confidence 1122222222222211000 000 001111221122221 11112222111 11 111
Q ss_pred -----chHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhH
Q 007288 381 -----VTWTSMMIGYGAHGHGK---EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEI 452 (609)
Q Consensus 381 -----~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 452 (609)
-+.+.|++.+.+.++.. +|+-+++.-.... +-|..+=..+|+.|+-.|-+..|.++|+.+.-.++..|...
T Consensus 432 ~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlg 510 (932)
T KOG2053|consen 432 DELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLG 510 (932)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccch
Confidence 24567778888877765 3444444444421 23444556677888888999999999988844456666555
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC----CcchHHHHHHHH
Q 007288 453 YGCVVDLLGRAGRVKEAYELIKSM-PF-KPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN----MMGTYIILSNIY 526 (609)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~ 526 (609)
|- +...+...|++..+...++.. .+ .-+..--.-.|....+.|.+.+..+...--.++.-. -..+-+.....+
T Consensus 511 h~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll 589 (932)
T KOG2053|consen 511 HL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLL 589 (932)
T ss_pred HH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 345556677877777776655 10 011111122344445667777666554433333321 122334567777
Q ss_pred HhcCChHHHHHHHHHHH
Q 007288 527 AAEGKWEEFAKFRKIMR 543 (609)
Q Consensus 527 ~~~g~~~~A~~~~~~m~ 543 (609)
...++.++-...+..|.
T Consensus 590 ~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 590 CNADRGTQLLKLLESMK 606 (932)
T ss_pred HhCCcHHHHHHHHhccc
Confidence 77888888888887776
No 143
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.00 E-value=0.00021 Score=59.54 Aligned_cols=113 Identities=13% Similarity=0.109 Sum_probs=85.7
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 007288 402 LFDEMVKSGVRPDR-IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFK 479 (609)
Q Consensus 402 ~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 479 (609)
.+++... ..|+. .....+...+...|++++|.+.++.+...+ +.+...+..+...+.+.|++++|...+++. ...
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4555554 34433 455666777888899999999998886654 346778888888888999999999888877 344
Q ss_pred C-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcc
Q 007288 480 P-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG 517 (609)
Q Consensus 480 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 517 (609)
| +...+..+...+...|+++.|...++++++..|++..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 4 4566777778888999999999999999999986544
No 144
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.98 E-value=1.5e-05 Score=47.86 Aligned_cols=33 Identities=33% Similarity=0.658 Sum_probs=26.0
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 007288 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP 413 (609)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 413 (609)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 577788888888888888888888888877776
No 145
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=0.00086 Score=59.22 Aligned_cols=183 Identities=15% Similarity=0.177 Sum_probs=144.4
Q ss_pred cCCHHHHHHHHHhcCC--------CCc-chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCH
Q 007288 362 CGNISDSQKIFSEMSD--------RDL-VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI-VFMAVLTACSHAGLV 431 (609)
Q Consensus 362 ~g~~~~A~~~~~~~~~--------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~ 431 (609)
..+.++..+++.++.. ++. ..|..++-+....|+.+.|...++.+..+ + |.+. .-..-.--+...|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 4678888888888762 233 24555666777889999999999999886 4 5544 222222335667999
Q ss_pred HHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHh
Q 007288 432 DEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM--PFKPDESVWGPLLGACKEHRLPNLGKLAALRVL 509 (609)
Q Consensus 432 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 509 (609)
++|+++++.+.+.+ +.|..++..-+-..-..|+.-+|++-+.+. .+-.|...|.-|...|...|+++.|.-.+++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 99999999997766 456777777777777788888888877776 566799999999999999999999999999999
Q ss_pred ccCCCCcchHHHHHHHHHhcCC---hHHHHHHHHHHHhCCC
Q 007288 510 DLKPNMMGTYIILSNIYAAEGK---WEEFAKFRKIMRGMGS 547 (609)
Q Consensus 510 ~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~ 547 (609)
=+.|.++..+..+++.+...|- ..-|.++|.+..+...
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 9999999999999999887764 5678888888887554
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.90 E-value=0.00079 Score=56.78 Aligned_cols=113 Identities=14% Similarity=0.098 Sum_probs=50.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCh--hHHHHHHHHHhhcCCH
Q 007288 393 HGHGKEAIELFDEMVKSGVRPDR----IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK--EIYGCVVDLLGRAGRV 466 (609)
Q Consensus 393 ~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~ 466 (609)
.++...+...++.+.+.. |+. ...-.+...+...|++++|...|+........++. .....|...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 555555555555555532 111 12223334455556666666666665443322211 1222344555555555
Q ss_pred HHHHHHHHhCCCCC-CHhhHHHHHHHHHhCCChHHHHHHHHH
Q 007288 467 KEAYELIKSMPFKP-DESVWGPLLGACKEHRLPNLGKLAALR 507 (609)
Q Consensus 467 ~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 507 (609)
++|+..++.....+ ....+......+.+.|+.++|...|++
T Consensus 102 d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 102 DEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555555432111 122222233444444444444444443
No 147
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.87 E-value=3.4e-05 Score=55.49 Aligned_cols=65 Identities=17% Similarity=0.123 Sum_probs=59.8
Q ss_pred CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC-ChHHHHHHHHHHHhC
Q 007288 481 DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEG-KWEEFAKFRKIMRGM 545 (609)
Q Consensus 481 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 545 (609)
+..+|..+...+...|++++|+..|+++++++|+++..|..++.+|...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45678888899999999999999999999999999999999999999999 799999999988763
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.84 E-value=0.00017 Score=55.42 Aligned_cols=93 Identities=20% Similarity=0.183 Sum_probs=72.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 007288 453 YGCVVDLLGRAGRVKEAYELIKSM-PFKPD-ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEG 530 (609)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 530 (609)
+..+...+...|++++|...+++. ...|+ ...+..+...+...++++.|...++.+....|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666777788888888888776 33343 3556666777888888999999999888888877778888899999999
Q ss_pred ChHHHHHHHHHHHhC
Q 007288 531 KWEEFAKFRKIMRGM 545 (609)
Q Consensus 531 ~~~~A~~~~~~m~~~ 545 (609)
++++|...+....+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999888887653
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.83 E-value=0.00023 Score=57.78 Aligned_cols=94 Identities=16% Similarity=0.001 Sum_probs=52.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC---cchHHHHHH
Q 007288 453 YGCVVDLLGRAGRVKEAYELIKSM-PFKPD----ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM---MGTYIILSN 524 (609)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 524 (609)
+..++..+.+.|++++|.+.++++ ...|+ ...+..+..++.+.|+++.|...++.+....|++ +..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344455555566666666665555 12222 1233445555666666666666666666655543 334556666
Q ss_pred HHHhcCChHHHHHHHHHHHhCC
Q 007288 525 IYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 525 ~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
++.+.|++++|...++++.+..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHC
Confidence 6666666666666666666543
No 150
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.82 E-value=2.5e-05 Score=58.70 Aligned_cols=77 Identities=17% Similarity=0.159 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHhC-CCCC---CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 007288 464 GRVKEAYELIKSM-PFKP---DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFR 539 (609)
Q Consensus 464 g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (609)
|+++.|+.+++++ ...| +...+..+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4555555555555 1112 233344455556666666666666655 4455544455556677777777777777666
Q ss_pred HH
Q 007288 540 KI 541 (609)
Q Consensus 540 ~~ 541 (609)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 151
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.81 E-value=0.00088 Score=56.48 Aligned_cols=124 Identities=13% Similarity=0.033 Sum_probs=91.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCC--ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----hhHHHHH
Q 007288 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP--NKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDE----SVWGPLL 489 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~ 489 (609)
.|..++..+ ..++...+...++.+.+....- .....-.+...+...|++++|...|+.. ...|+. .....|.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 444555555 4788899999999996543221 1233344668889999999999999998 222443 2344556
Q ss_pred HHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 007288 490 GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIM 542 (609)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 542 (609)
..+...|++++|+..++.. ...+..+..+...+++|.+.|++++|+..|++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7899999999999999774 333445678888999999999999999999864
No 152
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.81 E-value=5.9e-05 Score=53.44 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=52.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 488 LLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 488 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
+...+.+.|++++|...++++++..|++...+..++.++...|++++|..+++++.+..+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 456788999999999999999999999999999999999999999999999999976443
No 153
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.74 E-value=4.1e-05 Score=44.73 Aligned_cols=31 Identities=29% Similarity=0.544 Sum_probs=23.4
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCC
Q 007288 78 VSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108 (609)
Q Consensus 78 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 108 (609)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677788888888888888888888777663
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.73 E-value=0.00061 Score=55.19 Aligned_cols=103 Identities=11% Similarity=0.022 Sum_probs=61.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhcCCC--CChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HhhHHHHH
Q 007288 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNVN--PNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD----ESVWGPLL 489 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 489 (609)
++..+...+.+.|++++|...|..+...... .....+..+..++.+.|++++|...++.+ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444555566666666666666666443211 11234445666677777777777777665 22232 33455556
Q ss_pred HHHHhCCChHHHHHHHHHHhccCCCCcchH
Q 007288 490 GACKEHRLPNLGKLAALRVLDLKPNMMGTY 519 (609)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 519 (609)
.++.+.|+.+.|...++++++..|++....
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 667777777777777777777777654433
No 155
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.71 E-value=0.0082 Score=50.53 Aligned_cols=153 Identities=8% Similarity=0.001 Sum_probs=115.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHH
Q 007288 389 GYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKE 468 (609)
Q Consensus 389 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 468 (609)
+..+.=++++...-..+-.+ ..|....-..|..+....|++.+|...|++...--+--|..+.-.+.++....+++..
T Consensus 65 a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~ 142 (251)
T COG4700 65 ALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAA 142 (251)
T ss_pred HHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHH
Confidence 33343444444333333222 4677777777888999999999999999998765556678888888999999999999
Q ss_pred HHHHHHhCC-CCC---CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 469 AYELIKSMP-FKP---DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 469 A~~~~~~~~-~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
|...++++. ..| +..+...+.+.+...|.+..|+..|+.++...| .+..-......+.++|+.++|..-+..+.+
T Consensus 143 a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 143 AQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 999998872 223 233445566889999999999999999999999 577788888999999998888776655544
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.67 E-value=0.00036 Score=68.50 Aligned_cols=107 Identities=13% Similarity=0.041 Sum_probs=85.4
Q ss_pred HHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChH
Q 007288 422 LTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPN 499 (609)
Q Consensus 422 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 499 (609)
...+...|++++|+..|+++.+... .+...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 4556678999999999999977553 36777888888999999999999999888 4555 4567777788899999999
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 007288 500 LGKLAALRVLDLKPNMMGTYIILSNIYAAE 529 (609)
Q Consensus 500 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 529 (609)
+|+..++++++++|++......+..+..+.
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999998877766665554333
No 157
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.67 E-value=0.00047 Score=62.65 Aligned_cols=106 Identities=14% Similarity=0.068 Sum_probs=75.7
Q ss_pred HhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHhCCChHHHH
Q 007288 425 CSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD-ESVWGPLLGACKEHRLPNLGK 502 (609)
Q Consensus 425 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~ 502 (609)
..+.++|.+|+..|.+.++... -|...|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++++|+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 4567788888888888877542 35566666777888888888887777665 55554 567888888888888888888
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 007288 503 LAALRVLDLKPNMMGTYIILSNIYAAEGK 531 (609)
Q Consensus 503 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 531 (609)
+.|+++++++|++......|-.+=.+.+.
T Consensus 170 ~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 170 EAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 88888888888777555555554444433
No 158
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.66 E-value=6.2e-05 Score=43.98 Aligned_cols=31 Identities=39% Similarity=0.654 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHCCC
Q 007288 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGV 210 (609)
Q Consensus 180 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 210 (609)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677888888888888888888888877663
No 159
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.64 E-value=0.00022 Score=64.64 Aligned_cols=87 Identities=18% Similarity=0.137 Sum_probs=76.8
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCCHh-hHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHH
Q 007288 458 DLLGRAGRVKEAYELIKSM-PFKPDES-VWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEF 535 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 535 (609)
+-+.+.+++++|+..|.+. .+.|+.. -|..=..+|.+.|.++.|++-.+.++.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4566889999999999887 6777554 4455568899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 007288 536 AKFRKIMRG 544 (609)
Q Consensus 536 ~~~~~~m~~ 544 (609)
++.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 999988865
No 160
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.61 E-value=0.071 Score=51.12 Aligned_cols=109 Identities=18% Similarity=0.186 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 007288 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLV 431 (609)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 431 (609)
.+..+.-+...|+...|.++-.+..=|+-..|...+.+++..++|++-.++... +-++.-|..++.+|.+.|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455556677777777777777667777777777777777777766554321 11235666677777777777
Q ss_pred HHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007288 432 DEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476 (609)
Q Consensus 432 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 476 (609)
.+|..+..++ + +..-+..|.++|++.+|.+.--+.
T Consensus 254 ~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 254 KEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 7777666652 1 133456667777777776665543
No 161
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.0016 Score=59.64 Aligned_cols=107 Identities=12% Similarity=0.111 Sum_probs=85.6
Q ss_pred CCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHH-hC--CChHHHHHHHHHHhccCCCCcchHHH
Q 007288 447 NPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACK-EH--RLPNLGKLAALRVLDLKPNMMGTYII 521 (609)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~-~~--~~~~~a~~~~~~~~~~~p~~~~~~~~ 521 (609)
+-|...|-.|...|...|+.+.|...|.+. .+.| +...+..+..++. .. ....++..+++++++.+|.|......
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 447889999999999999999999999887 3444 3444555554433 22 24568899999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCcccCce
Q 007288 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGM 553 (609)
Q Consensus 522 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 553 (609)
|+..+...|++.+|...|+.|.+.....+|+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 99999999999999999999999777555433
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.57 E-value=0.00081 Score=58.66 Aligned_cols=93 Identities=15% Similarity=0.098 Sum_probs=58.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007288 452 IYGCVVDLLGRAGRVKEAYELIKSM-PFKPD----ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 526 (609)
.+..+...+...|++++|...|++. ...|+ ...+..+..++.+.|++++|...++++++..|.+...+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3444455555555555555555544 11121 245566667777777777777777777777777777777777777
Q ss_pred HhcCC--------------hHHHHHHHHHHHh
Q 007288 527 AAEGK--------------WEEFAKFRKIMRG 544 (609)
Q Consensus 527 ~~~g~--------------~~~A~~~~~~m~~ 544 (609)
...|+ +++|.+++++...
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 77666 4555566555554
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.55 E-value=0.0027 Score=55.34 Aligned_cols=130 Identities=18% Similarity=0.217 Sum_probs=80.8
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHH
Q 007288 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD--RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVV 457 (609)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 457 (609)
...+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+++..+... -+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHH
Confidence 34566666677777778888777777776433222 24666667777777777777777777755332 2344555566
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 007288 458 DLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK 531 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 531 (609)
..+...|+...+..-++.. ...+++|.+.++++++.+|++ |..++..+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6666666655544322221 112677888889989888865 5556666555554
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.52 E-value=0.0015 Score=64.18 Aligned_cols=104 Identities=11% Similarity=0.080 Sum_probs=84.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCH
Q 007288 387 MIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466 (609)
Q Consensus 387 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 466 (609)
...+...|++++|++.|+++++.. .-+...|..+..+|...|++++|+..++++..... .+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCH
Confidence 455678899999999999999853 23556888888999999999999999999977552 3677888899999999999
Q ss_pred HHHHHHHHhC-CCCCCHhhHHHHHHHH
Q 007288 467 KEAYELIKSM-PFKPDESVWGPLLGAC 492 (609)
Q Consensus 467 ~~A~~~~~~~-~~~p~~~~~~~l~~~~ 492 (609)
++|+..|++. .+.|+......++..|
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999987 5667766655555333
No 165
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.51 E-value=0.00031 Score=51.07 Aligned_cols=59 Identities=12% Similarity=0.036 Sum_probs=54.1
Q ss_pred HHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 489 LGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 489 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
-..+.+.++++.|..+++++++++|+++..+...+.+|.+.|++++|.+.+++..+.++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35688999999999999999999999999999999999999999999999999987655
No 166
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.50 E-value=0.00013 Score=52.22 Aligned_cols=55 Identities=11% Similarity=0.152 Sum_probs=46.7
Q ss_pred HhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 493 KEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 493 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
.+.|++++|+..+++++...|++...+..++.+|.+.|++++|..+++++.....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4678899999999999999999999999999999999999999999988876443
No 167
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.47 E-value=0.0018 Score=49.64 Aligned_cols=79 Identities=15% Similarity=0.241 Sum_probs=65.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------CHHHHHHHHHHhhhcCCCCChhHHH
Q 007288 384 TSMMIGYGAHGHGKEAIELFDEMVKSGV-RPDRIVFMAVLTACSHAG--------LVDEGLKYFKSMNDYNVNPNKEIYG 454 (609)
Q Consensus 384 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 454 (609)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+|+.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455566666999999999999999999 899999999999887653 3456788899998889999999999
Q ss_pred HHHHHHhh
Q 007288 455 CVVDLLGR 462 (609)
Q Consensus 455 ~l~~~~~~ 462 (609)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99887754
No 168
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.47 E-value=0.0017 Score=49.79 Aligned_cols=80 Identities=8% Similarity=0.007 Sum_probs=67.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCC-CCCHhhHHHHHHHHHccC--------CchhHHHHHHHHHHhCCCCChhHH
Q 007288 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGV-EMNPYSFSIAVRACASTG--------WVSFGKLIHAAVIKHGFGSNLPVM 252 (609)
Q Consensus 182 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~~~~~~~~~g~~~~~~~~ 252 (609)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-....+|+.|+..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456777777999999999999999999 899999999999987654 234567889999999999999999
Q ss_pred HHHHHHHHh
Q 007288 253 NSILDMYCR 261 (609)
Q Consensus 253 ~~l~~~~~~ 261 (609)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999987765
No 169
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.47 E-value=0.0012 Score=57.34 Aligned_cols=94 Identities=11% Similarity=-0.062 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHH
Q 007288 450 KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD----ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 524 (609)
...|..+...+...|++++|+..|++. ...|+ ..+|..+..++...|++++|...+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455666777777888888888888777 23332 2467788888999999999999999999999988888888888
Q ss_pred HHH-------hcCChHHHHHHHHHHH
Q 007288 525 IYA-------AEGKWEEFAKFRKIMR 543 (609)
Q Consensus 525 ~~~-------~~g~~~~A~~~~~~m~ 543 (609)
+|. ..|++++|...+++..
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 888 8888886666665543
No 170
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.43 E-value=0.13 Score=49.44 Aligned_cols=105 Identities=14% Similarity=0.226 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhcc
Q 007288 251 VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAA 329 (609)
Q Consensus 251 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 329 (609)
+.+..+.-+...|+...|.++-.+..-|+...|-..+.+++..+ |++-.++... +-.+.-|-.++.+|.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 34445666677788888888888777777777777888888777 7666554322 1234667777777777777
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 007288 330 LSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKI 371 (609)
Q Consensus 330 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 371 (609)
..+|..+...+. +..-+..|.++|++.+|.+.
T Consensus 253 ~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHH
Confidence 777776665521 14456677777777776554
No 171
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.41 E-value=0.02 Score=52.75 Aligned_cols=74 Identities=14% Similarity=0.070 Sum_probs=40.2
Q ss_pred cccCCCCCCCCCChhHHhHHHHHHHccCChhHHHHhhccCCC--CCcc-c---HHHHHHHHHcCCChhHHHHHHHHHHHC
Q 007288 33 SIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPE--RDVV-S---WTVMIAGYTSFNCHNQAWTVFVEMVRN 106 (609)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~-~---~~~li~~~~~~~~~~~a~~~~~~m~~~ 106 (609)
++.+..+..+..+...+-.....+.+.|++++|.+.|+.+.. |+.. . .-.+..++.+.++++.|...+++..+.
T Consensus 19 gCs~~~~~~~~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 19 GCSGSKEEVPDNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred hcCCCCcCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 343333333333444443444555566777777777776653 3221 1 123445566777777777777777664
No 172
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.40 E-value=0.0057 Score=62.91 Aligned_cols=64 Identities=14% Similarity=0.128 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 483 SVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 483 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
..+..+.-.+...|++++|...++++++++| +...|..++.+|...|+.++|.+.+++....++
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 4444444444455666666666666666666 355666666666666666666666666655443
No 173
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.39 E-value=0.00041 Score=52.08 Aligned_cols=81 Identities=15% Similarity=0.299 Sum_probs=38.5
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 007288 393 HGHGKEAIELFDEMVKSGV-RPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471 (609)
Q Consensus 393 ~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 471 (609)
.|+++.|+.+++++.+... .|+...+..+..++.+.|++++|+.+++. .+.+. .+....-.+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3556666666666655322 11233333455556666666666666655 21111 112233334555566666666665
Q ss_pred HHHh
Q 007288 472 LIKS 475 (609)
Q Consensus 472 ~~~~ 475 (609)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 174
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.38 E-value=0.0021 Score=49.11 Aligned_cols=90 Identities=17% Similarity=0.200 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc
Q 007288 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463 (609)
Q Consensus 384 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 463 (609)
..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|...++...+.. +.+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 344445555555555555555555431 1122344444445555555555555555543322 11223344444444444
Q ss_pred CCHHHHHHHHHh
Q 007288 464 GRVKEAYELIKS 475 (609)
Q Consensus 464 g~~~~A~~~~~~ 475 (609)
|++++|...+.+
T Consensus 82 ~~~~~a~~~~~~ 93 (100)
T cd00189 82 GKYEEALEAYEK 93 (100)
T ss_pred HhHHHHHHHHHH
Confidence 444444444433
No 175
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.37 E-value=0.0017 Score=63.91 Aligned_cols=83 Identities=13% Similarity=0.113 Sum_probs=64.7
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 007288 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMY 259 (609)
Q Consensus 180 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 259 (609)
.+.+++++.|.+.|..+.++.+++.=..-|+-||..|++.||..+.+.|++..|.++...|...+...+..++..-+.++
T Consensus 104 ~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 104 STHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred ccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 34567888888888888888888888888888888888888888888888888888888888777666666666555555
Q ss_pred Hhc
Q 007288 260 CRF 262 (609)
Q Consensus 260 ~~~ 262 (609)
.+.
T Consensus 184 ~~~ 186 (429)
T PF10037_consen 184 YKY 186 (429)
T ss_pred HHh
Confidence 554
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.36 E-value=0.021 Score=54.31 Aligned_cols=109 Identities=16% Similarity=0.282 Sum_probs=50.7
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhc-CCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHhcc
Q 007288 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH-GHGKEAIELFDEMVK----SGVRPD--RIVFMAVLTACSHA 428 (609)
Q Consensus 356 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~----~g~~p~--~~~~~~ll~~~~~~ 428 (609)
+..|...|++..|-.++.. +...|-.. |++++|++.|++..+ .| .+. ..++..+...+.+.
T Consensus 101 ~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHh
Confidence 3445566666655544433 34445454 566666666666543 12 111 12445555566666
Q ss_pred CCHHHHHHHHHHhhhcCCC-----CChh-HHHHHHHHHhhcCCHHHHHHHHHhC
Q 007288 429 GLVDEGLKYFKSMNDYNVN-----PNKE-IYGCVVDLLGRAGRVKEAYELIKSM 476 (609)
Q Consensus 429 ~~~~~a~~~~~~~~~~~~~-----~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 476 (609)
|++++|.++|++....... .+.. .+-..+-++...|++..|.+.+++.
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666666665332211 1111 1222233444556666666666654
No 177
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.01 Score=56.51 Aligned_cols=153 Identities=13% Similarity=0.066 Sum_probs=105.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHHhhhcCCCCChhH-------------
Q 007288 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLT--ACSHAGLVDEGLKYFKSMNDYNVNPNKEI------------- 452 (609)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------------- 452 (609)
.++...|++++|.++-....+.. ++ ..+..+++ ++--.++.+.|...|++....+ |+...
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHH
Confidence 45667788888888777766532 11 12333333 2334667788888888775543 33221
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHh-----hHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007288 453 YGCVVDLLGRAGRVKEAYELIKSM-PFKPDES-----VWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526 (609)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 526 (609)
+..=.+-..+.|++..|.+.|.+. .+.|+.. .|.....+..+.|+..+|+.-.+.+++++|.-...|..-++++
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 112223456788899999988877 5555433 4444445677889999999999999999998888888899999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 007288 527 AAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 527 ~~~g~~~~A~~~~~~m~~~ 545 (609)
...++|++|.+-+++..+.
T Consensus 332 l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999988887653
No 178
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.31 E-value=0.19 Score=48.84 Aligned_cols=190 Identities=13% Similarity=0.138 Sum_probs=110.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCcchHH-------HHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHH
Q 007288 350 ALANALIDMYAKCGNISDSQKIFSEMS--DRDLVTWT-------SMMIGYG----AHGHGKEAIELFDEMVKSGVRPDRI 416 (609)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~-------~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~ 416 (609)
.++..++....+.++...|.+.+.-+. +|+...-. .+-+..+ ..-+...=+.+|+...... .|..
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--iDrq 376 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--IDRQ 376 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--ccHH
Confidence 345666666777777777777766554 33322111 1111111 1112233345555555533 2332
Q ss_pred -HHHHHH---HHHhccCC-HHHHHHHHHHhhhcCCCCChhHHHHHH----HHHhhc---CCHH---HHHHHHHhCCCCC-
Q 007288 417 -VFMAVL---TACSHAGL-VDEGLKYFKSMNDYNVNPNKEIYGCVV----DLLGRA---GRVK---EAYELIKSMPFKP- 480 (609)
Q Consensus 417 -~~~~ll---~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~---g~~~---~A~~~~~~~~~~p- 480 (609)
....|+ .-+-+.|. -++|+++++...+.. +-|..+-|.+. ..|..+ ..+. .-..++++.|+.|
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i 455 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPI 455 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcc
Confidence 222222 22444454 778888888875532 22443333222 222211 1122 2234445556665
Q ss_pred ---CHhhHHHHHHH--HHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 007288 481 ---DESVWGPLLGA--CKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMR 543 (609)
Q Consensus 481 ---~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 543 (609)
+...-|.|.+| +..+|++.++.-.-.-+.++.| ++.+|..++-.+....+|++|..++..+.
T Consensus 456 ~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 456 TISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 33344555544 6689999999999999999999 89999999999999999999999997763
No 179
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.30 E-value=0.0058 Score=60.26 Aligned_cols=119 Identities=12% Similarity=0.059 Sum_probs=68.6
Q ss_pred CCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCcchH
Q 007288 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR--GLDGNLALANALIDMYAKCGNISDSQKIFSEMSD----RDLVTW 383 (609)
Q Consensus 310 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~ 383 (609)
.+.+...+..+++.+....+++.+..++...... ....-..+..++++.|.+.|..+.+..++..=.. ||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445555556666666666666666666655543 2222233445666666666666666666655443 566666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 007288 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHA 428 (609)
Q Consensus 384 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 428 (609)
|.|++.+.+.|++..|.++...|..++.-.+..|+..-+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666666666666666555555555555555554443
No 180
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.27 E-value=0.00072 Score=47.77 Aligned_cols=61 Identities=18% Similarity=0.163 Sum_probs=45.8
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCc
Q 007288 456 VVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMM 516 (609)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 516 (609)
+...+...|++++|++.|+++ ...| +...|..+..++...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456677888888888888887 4456 455666777888888888888888888888888653
No 181
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.31 Score=50.45 Aligned_cols=201 Identities=11% Similarity=-0.001 Sum_probs=120.9
Q ss_pred CCCChhHHhHHHHHHHccCChhHHHHhhcc-CC------------CCCcccHHHHHH------HHHcCCChhHHHHHHHH
Q 007288 42 PKGPSILATNLIKSYFDEGLIEEARTLFDE-MP------------ERDVVSWTVMIA------GYTSFNCHNQAWTVFVE 102 (609)
Q Consensus 42 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~------------~~~~~~~~~li~------~~~~~~~~~~a~~~~~~ 102 (609)
.+|...+|.+.-..=.+.++-++++..+.+ +. +-.+..--.|++ ++.+.-++++-..+-+.
T Consensus 335 ~ePgA~L~eA~q~~e~~S~kade~L~~~~e~L~~aV~~CI~aA~~ef~pe~QK~LL~AAsfGk~~l~~~~~d~~~~v~~~ 414 (829)
T KOG2280|consen 335 TEPGALLYEAFQKMEQKSGKADEYLSEIREDLYKAVDDCIEAACDEFQPEEQKSLLRAASFGKASLRTPNPDEYMRVCRE 414 (829)
T ss_pred CCchHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHhhcccccccCChHHHHHHHHH
Confidence 466777787777777778888888777653 11 011111223333 33455566655554444
Q ss_pred H--------HHCCCCCCcchHHH-----HHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcC--CCHHHH
Q 007288 103 M--------VRNEVNPNAFTLSS-----VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC--ISMDNA 167 (609)
Q Consensus 103 m--------~~~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~~A 167 (609)
+ ..-|+..+..-|.. ++.-+...+.+..|.++-..+...-..- ..++.....-+.+.. .+-+.+
T Consensus 415 lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vl 493 (829)
T KOG2280|consen 415 LRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVL 493 (829)
T ss_pred HHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHH
Confidence 3 34577777766655 4555677788888888877664322222 466666666666542 133444
Q ss_pred HHHHccCCC--CChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCC----CCHhhHHHHHHHHHccCCchhHHHHHHHHH
Q 007288 168 RLVFNDMKW--KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVE----MNPYSFSIAVRACASTGWVSFGKLIHAAVI 241 (609)
Q Consensus 168 ~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~----p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 241 (609)
..+=+++.. ....+|..+.+.....|+.+.|..+++.=...+.. .+...+...+.-+...|+.+....++-++.
T Consensus 494 d~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 494 DKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred HHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 445455555 46778999999889999999998887542221111 123345556666777788777777766665
Q ss_pred Hh
Q 007288 242 KH 243 (609)
Q Consensus 242 ~~ 243 (609)
..
T Consensus 574 ~~ 575 (829)
T KOG2280|consen 574 NK 575 (829)
T ss_pred HH
Confidence 43
No 182
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.26 E-value=0.014 Score=58.65 Aligned_cols=241 Identities=15% Similarity=0.140 Sum_probs=127.1
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHh---------c--CCCChhHHHHHHHHHHhCC---chHHHHHHHHhHHCCCCC
Q 007288 247 SNLPVMNSILDMYCRFDCLSDANQYFDE---------M--TEKDLITWNTIIAGYEKSG---SSECLNMFSKMKSERFSP 312 (609)
Q Consensus 247 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~---------~--~~~~~~~~~~li~~~~~~~---~~~a~~~~~~m~~~~~~p 312 (609)
+....+.+-+..|...|.+++|..+--- + ..-+...++..=.+|.+.. +-+.+.-+++|++.|-.|
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 3334444555566667776666543111 0 0012334455556666655 455555667788888888
Q ss_pred CHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------------C
Q 007288 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--------------R 378 (609)
Q Consensus 313 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------~ 378 (609)
+.... ...|+-.|.+.+|.++|.+- |.. +..+++|.....++.|.+++..... .
T Consensus 634 ~~iLl---A~~~Ay~gKF~EAAklFk~~---G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr 701 (1081)
T KOG1538|consen 634 NDLLL---ADVFAYQGKFHEAAKLFKRS---GHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWAR 701 (1081)
T ss_pred hHHHH---HHHHHhhhhHHHHHHHHHHc---Cch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhh
Confidence 87643 44566678888888877643 211 2344455555555555554443321 1
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHH------HHHHCCCC---CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC
Q 007288 379 DLVTWTSMMIGYGAHGHGKEAIELFD------EMVKSGVR---PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN 449 (609)
Q Consensus 379 ~~~~~~~li~~~~~~g~~~~A~~~~~------~m~~~g~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 449 (609)
++.--.+....+...|+.++|..+.- -+.+-+.+ .+..+...+...+.+...+.-|.++|..|-+
T Consensus 702 ~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD------ 775 (1081)
T KOG1538|consen 702 NIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD------ 775 (1081)
T ss_pred hcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc------
Confidence 11111223344455666666665432 11121212 2333555555556666677777777777633
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHhh-----------HHHHHHHHHhCCChHHHHHHHHHH
Q 007288 450 KEIYGCVVDLLGRAGRVKEAYELIKSMP-FKPDESV-----------WGPLLGACKEHRLPNLGKLAALRV 508 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~-----------~~~l~~~~~~~~~~~~a~~~~~~~ 508 (609)
..++++.....++|.+|..+-++.| +.||+.. +.-.-.++.+.|+..+|..+++++
T Consensus 776 ---~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 776 ---LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred ---HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 1246677778888888888888774 3344321 111123455555555555555544
No 183
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.26 E-value=0.011 Score=49.01 Aligned_cols=105 Identities=7% Similarity=-0.088 Sum_probs=71.9
Q ss_pred HHHccCC-CCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCC
Q 007288 169 LVFNDMK-WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGS 247 (609)
Q Consensus 169 ~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~ 247 (609)
..+..+. ..+....-.+...+...|++++|..+|+-+...... +..-|..|...+-..|++++|...|....... +.
T Consensus 24 ~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~d 101 (157)
T PRK15363 24 RMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-ID 101 (157)
T ss_pred HHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CC
Confidence 3344444 444455556666677788888888888877664322 34445556666677788888888888877776 46
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 007288 248 NLPVMNSILDMYCRFDCLSDANQYFDEM 275 (609)
Q Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 275 (609)
|+..+-.+..++...|+.+.|.+.|+..
T Consensus 102 dp~~~~~ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 102 APQAPWAAAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6777777788888888888888877654
No 184
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.25 E-value=0.01 Score=56.18 Aligned_cols=131 Identities=15% Similarity=0.135 Sum_probs=85.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHH
Q 007288 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTA-CSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLL 460 (609)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 460 (609)
+|..++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 56667777777777888888888887542 2222333333332 33346666788888887442 345677777888888
Q ss_pred hhcCCHHHHHHHHHhC-CCCCCH----hhHHHHHHHHHhCCChHHHHHHHHHHhccCCC
Q 007288 461 GRAGRVKEAYELIKSM-PFKPDE----SVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 461 ~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
.+.++.+.|..+|++. ..-|.. ..|...+..-.+.|+.+....+.+++.+..|.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 8888888888888877 222333 47888888888888888888888888887774
No 185
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.24 E-value=0.015 Score=59.81 Aligned_cols=139 Identities=15% Similarity=0.049 Sum_probs=101.6
Q ss_pred CCCcchHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccC--------CHHHHHHHHHHhh
Q 007288 377 DRDLVTWTSMMIGYGAH-----GHGKEAIELFDEMVKSGVRPDR-IVFMAVLTACSHAG--------LVDEGLKYFKSMN 442 (609)
Q Consensus 377 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~--------~~~~a~~~~~~~~ 442 (609)
..+...|...+.+.... ++..+|..+|++..+ ..|+. ..+..+..++.... +...+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 35778899988875432 237799999999998 46765 35555544443221 2234444444432
Q ss_pred hc-CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcc
Q 007288 443 DY-NVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG 517 (609)
Q Consensus 443 ~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 517 (609)
.. ....+...|..+.-.....|++++|...+++. ...|+...|..+..++...|+.++|.+.++++..++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 22 23345577877777777789999999999998 67788889999999999999999999999999999997664
No 186
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.18 E-value=0.0039 Score=54.27 Aligned_cols=97 Identities=20% Similarity=0.336 Sum_probs=73.7
Q ss_pred HHHHHhc--CCCCcchHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-------------
Q 007288 369 QKIFSEM--SDRDLVTWTSMMIGYGAH-----GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHA------------- 428 (609)
Q Consensus 369 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~------------- 428 (609)
...|+.. ...+-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.|++.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 346667777777777643 66777777888888899999999999999887652
Q ss_pred ---CCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCC
Q 007288 429 ---GLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465 (609)
Q Consensus 429 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 465 (609)
.+.+-|++++++|...|+.||.+++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2345688999999999999999999999999866654
No 187
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.17 E-value=0.00028 Score=41.92 Aligned_cols=33 Identities=30% Similarity=0.545 Sum_probs=30.8
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCChHHHHH
Q 007288 505 ALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAK 537 (609)
Q Consensus 505 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 537 (609)
++++++++|+++..|..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678999999999999999999999999999863
No 188
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.14 E-value=0.0096 Score=51.67 Aligned_cols=62 Identities=15% Similarity=0.222 Sum_probs=33.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 007288 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD--RIVFMAVLTACSHAGLVDEGLKYFKSMND 443 (609)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 443 (609)
.|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|+..++....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555556666666666666654321211 13455555556666666666666665543
No 189
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.11 E-value=0.0039 Score=54.28 Aligned_cols=97 Identities=11% Similarity=0.096 Sum_probs=72.0
Q ss_pred HHHHccC--CCCChhhHHHHHHHHHhc-----CChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC------------
Q 007288 168 RLVFNDM--KWKNDVSWTTLITGYAHS-----GNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG------------ 228 (609)
Q Consensus 168 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g------------ 228 (609)
...|+.. ..++..+|..+++.|.+. |..+=....+..|.+-|+.-|..+|+.|+..+-+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3444444 346777788888777754 666667777888888899999999999998875422
Q ss_pred ----CchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 007288 229 ----WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264 (609)
Q Consensus 229 ----~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 264 (609)
+-+-|.+++++|...|+-||..++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 345678888888888888888888888888766544
No 190
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.10 E-value=0.0042 Score=57.69 Aligned_cols=94 Identities=12% Similarity=0.031 Sum_probs=58.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----hhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC---cchHHHHH
Q 007288 452 IYGCVVDLLGRAGRVKEAYELIKSM-PFKPDE----SVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM---MGTYIILS 523 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 523 (609)
.|...+..+.+.|++++|+..|+.. ...|+. ..+.-+..++...|+++.|...|+.+++..|++ +..+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444444556667766666665 223332 344455566777777777777777777766643 34445556
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 007288 524 NIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 524 ~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
.+|...|++++|..+++++.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6777777777777777777664
No 191
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.99 E-value=0.25 Score=45.54 Aligned_cols=81 Identities=11% Similarity=-0.131 Sum_probs=55.5
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcc-hH---HHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhh
Q 007288 76 DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAF-TL---SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVEN 151 (609)
Q Consensus 76 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-t~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 151 (609)
+...+-.....+...|++++|.+.|+.+...- |+.. .. -.+..++.+.+++++|...+++.++..+.....-+.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 33334445555677899999999999998853 3332 21 345567888999999999999999887655444555
Q ss_pred HHHHHHH
Q 007288 152 SLMDVYA 158 (609)
Q Consensus 152 ~ll~~~~ 158 (609)
..+.+.+
T Consensus 109 ~Y~~g~~ 115 (243)
T PRK10866 109 LYMRGLT 115 (243)
T ss_pred HHHHHHh
Confidence 5555443
No 192
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.96 E-value=0.0012 Score=47.04 Aligned_cols=61 Identities=23% Similarity=0.293 Sum_probs=33.1
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhHHHH
Q 007288 427 HAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDESVWGPL 488 (609)
Q Consensus 427 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 488 (609)
+.|++++|+++|+.+..... -+...+..+..+|.+.|++++|.++++++ ...|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 45666666666666644332 24555555666666666666666666666 334554444333
No 193
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.94 E-value=0.013 Score=55.54 Aligned_cols=129 Identities=14% Similarity=0.119 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhh-cCCHHHHHHHHHhC--CCCCCHhhHHHHHHHH
Q 007288 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR-AGRVKEAYELIKSM--PFKPDESVWGPLLGAC 492 (609)
Q Consensus 416 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~ 492 (609)
.+|..+++.+.+.+..+.|..+|.+..+.+ ..+..+|-.....-.+ .++.+.|..+|+.. .+..+...|...+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 468888898999999999999999997543 2345555555555333 56777799999988 3445778899999999
Q ss_pred HhCCChHHHHHHHHHHhccCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 493 KEHRLPNLGKLAALRVLDLKPNMM---GTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 493 ~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
...++.+.|..+|++++..-|.+. ..|...+..=.+.|+.+.+..+.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999998766433 58888888888999999999999888763
No 194
>PRK15331 chaperone protein SicA; Provisional
Probab=96.93 E-value=0.023 Score=47.55 Aligned_cols=89 Identities=10% Similarity=-0.005 Sum_probs=75.0
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChH
Q 007288 456 VVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWE 533 (609)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 533 (609)
...-+...|++++|..+|.-+ -..| +..-|..|..++...++++.|...|..+..++++|+..+...+..|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 344456789999999999877 1222 45557777788899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 007288 534 EFAKFRKIMRG 544 (609)
Q Consensus 534 ~A~~~~~~m~~ 544 (609)
.|...|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999988876
No 195
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.93 E-value=0.065 Score=54.07 Aligned_cols=169 Identities=11% Similarity=0.139 Sum_probs=90.1
Q ss_pred HHHHHHHhcCC--hhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 007288 184 TLITGYAHSGN--GYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR 261 (609)
Q Consensus 184 ~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 261 (609)
..=.+|.+..+ +-+.+--+++|+++|-.|+..-. ...|+-.|.+.+|-++|.+ .|.+ |..+.+|..
T Consensus 603 ~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTD 670 (1081)
T KOG1538|consen 603 TARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTD 670 (1081)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHH
Confidence 33344444333 23344456677777777776543 3445667777777777643 2211 234445555
Q ss_pred cCCHHHHHHHHHhcCCC-------ChhHH-------HHHHHHHHhCC-chHHHH-------------HHHHhHHCCCCCC
Q 007288 262 FDCLSDANQYFDEMTEK-------DLITW-------NTIIAGYEKSG-SSECLN-------------MFSKMKSERFSPN 313 (609)
Q Consensus 262 ~g~~~~A~~~~~~~~~~-------~~~~~-------~~li~~~~~~~-~~~a~~-------------~~~~m~~~~~~p~ 313 (609)
...++.|.+++..-... ....| .+....+...| .++|.. +-+++- ..+
T Consensus 671 lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld----~~e 746 (1081)
T KOG1538|consen 671 LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD----KAE 746 (1081)
T ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc----hhh
Confidence 55555555544332110 00000 11122233334 333333 222221 123
Q ss_pred HHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 007288 314 CFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD 377 (609)
Q Consensus 314 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 377 (609)
..+...+...+-+...+..|.+||..|-+. ..+++++...++|.+|..+-+...+
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 444544555555666777888888877543 4678888889999999998888875
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.92 E-value=0.015 Score=46.56 Aligned_cols=52 Identities=10% Similarity=-0.019 Sum_probs=26.3
Q ss_pred HHHHHhCCChHHHHHHHHHHhccCCC---CcchHHHHHHHHHhcCChHHHHHHHH
Q 007288 489 LGACKEHRLPNLGKLAALRVLDLKPN---MMGTYIILSNIYAAEGKWEEFAKFRK 540 (609)
Q Consensus 489 ~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (609)
.+.+...|++++|..++++.....|+ +......++.++...|++++|+..+-
T Consensus 45 astlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l 99 (120)
T PF12688_consen 45 ASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLL 99 (120)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34455555555555555555554443 33333444455555555555555543
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.089 Score=47.15 Aligned_cols=125 Identities=10% Similarity=-0.033 Sum_probs=62.9
Q ss_pred HHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHhhHHHHH-----HHHH
Q 007288 422 LTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM---PFKPDESVWGPLL-----GACK 493 (609)
Q Consensus 422 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~-----~~~~ 493 (609)
+..+.-.|.+.-...++.+.++...+-++.....|+..-...|+.+.|...|++. .-+-|..+.+.++ ..+.
T Consensus 184 ~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~l 263 (366)
T KOG2796|consen 184 ANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHL 263 (366)
T ss_pred HHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhee
Confidence 3333334444444444444444443444444444444445555555555544432 0011222222222 2344
Q ss_pred hCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 494 EHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 494 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
-++++..|...+.++...+|.++...+.-+-++.-.|+..+|++.++.|.+..
T Consensus 264 g~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 264 GQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred cccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 55566666666666666666666666665555556666666666666666543
No 198
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.77 E-value=0.0032 Score=45.03 Aligned_cols=65 Identities=18% Similarity=0.133 Sum_probs=44.2
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCC-ChHHHHHHHHHHhccCC
Q 007288 449 NKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHR-LPNLGKLAALRVLDLKP 513 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p 513 (609)
+...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456666777777777777777777666 3334 3456666667777777 67777777777777766
No 199
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.76 E-value=0.024 Score=53.86 Aligned_cols=94 Identities=9% Similarity=-0.092 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhc-CCHHHHHHHHHhC-----C-CCC--CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCc------
Q 007288 452 IYGCVVDLLGRA-GRVKEAYELIKSM-----P-FKP--DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMM------ 516 (609)
Q Consensus 452 ~~~~l~~~~~~~-g~~~~A~~~~~~~-----~-~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------ 516 (609)
.+..+...|... |++++|++.|++. . -.+ -..++..+...+.+.|++++|...++++....-++.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 444455566665 6667666666655 0 111 123344455667777777777777777655321111
Q ss_pred -chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 517 -GTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 517 -~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
..+...+-++...|+...|.+.+++....
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 12334455566667777777777777654
No 200
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.74 E-value=0.56 Score=44.79 Aligned_cols=238 Identities=15% Similarity=0.174 Sum_probs=150.1
Q ss_pred chHHHHHHHHhHHCCCCCCHH--hHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 007288 295 SSECLNMFSKMKSERFSPNCF--TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIF 372 (609)
Q Consensus 295 ~~~a~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 372 (609)
++.|.+-|+.|... |... -...+.-...+.|+.+.|.++-...-..- +.-.....+.+...+..|+|+.|++++
T Consensus 136 ~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLv 211 (531)
T COG3898 136 YEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLV 211 (531)
T ss_pred hHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHH
Confidence 56666666666541 2211 12223333346677777777766655442 222445667778888888888888888
Q ss_pred HhcC-----CCCcc--hHHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHh
Q 007288 373 SEMS-----DRDLV--TWTSMMIGYG---AHGHGKEAIELFDEMVKSGVRPDRI-VFMAVLTACSHAGLVDEGLKYFKSM 441 (609)
Q Consensus 373 ~~~~-----~~~~~--~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~ 441 (609)
+.-. ++++. .-..|+.+-+ -.-+...|...-.+..+ +.||.. .-..-..++.+.|+..++-.+++.+
T Consensus 212 d~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~a 289 (531)
T COG3898 212 DAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETA 289 (531)
T ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHH
Confidence 7654 23332 1122222211 12345666666665555 567765 3344457889999999999999999
Q ss_pred hhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCc
Q 007288 442 NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM----PFKPD-ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMM 516 (609)
Q Consensus 442 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 516 (609)
-+....| ..+.. ..+.+.|+. ++.-+++. .++|| ..+...+..+....|++..|..-.+.+....| ..
T Consensus 290 WK~ePHP--~ia~l--Y~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-re 362 (531)
T COG3898 290 WKAEPHP--DIALL--YVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RE 362 (531)
T ss_pred HhcCCCh--HHHHH--HHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hh
Confidence 6655444 44322 233455553 33333222 34564 45555666888999999999999999999999 57
Q ss_pred chHHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 007288 517 GTYIILSNIYAAE-GKWEEFAKFRKIMRGM 545 (609)
Q Consensus 517 ~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 545 (609)
..|..|+++-... |+-.++..++-+-.+.
T Consensus 363 s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 363 SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 7888888887665 9999999998887764
No 201
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.73 E-value=0.88 Score=46.81 Aligned_cols=200 Identities=10% Similarity=0.095 Sum_probs=104.9
Q ss_pred CCCcchHHHHHHHhhCCCChHHHHHHHHHHHHh-CCC--------CCcchhhHHHHHHHhcCCCHHHHHHHHccCCCCCh
Q 007288 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKE-GLE--------GSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179 (609)
Q Consensus 109 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~--------~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~~ 179 (609)
.|.+..|..+.......-.++.|+..|-+.... |++ .+...-.+=+.+| .| .+++|++++-++..+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g-~feeaek~yld~drrDL 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YG-EFEEAEKLYLDADRRDL 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hc-chhHhhhhhhccchhhh
Confidence 456666666655544444455555444333221 111 0111111222222 35 88999998888877764
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC----HhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHH
Q 007288 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMN----PYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSI 255 (609)
Q Consensus 180 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 255 (609)
. |..+.+.|++-...++++. -|-..| ...++.+...++....+++|.+.|..-... ...
T Consensus 766 A-----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~ 828 (1189)
T KOG2041|consen 766 A-----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQ 828 (1189)
T ss_pred h-----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhH
Confidence 3 5566667777666665542 111111 235666666666667777777766543211 235
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHH
Q 007288 256 LDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334 (609)
Q Consensus 256 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 334 (609)
+.++.+..++++-+.+-..+++. ....-.+...+...| -++|.+.|-+--. | ...+..|...+++.+|.
T Consensus 829 ~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~av 898 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAV 898 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHH
Confidence 56666666666666666555543 233445556666666 6666655533211 1 12344555556665555
Q ss_pred HHHH
Q 007288 335 QVHA 338 (609)
Q Consensus 335 ~~~~ 338 (609)
++-+
T Consensus 899 elaq 902 (1189)
T KOG2041|consen 899 ELAQ 902 (1189)
T ss_pred HHHH
Confidence 5444
No 202
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.73 E-value=0.045 Score=43.81 Aligned_cols=104 Identities=10% Similarity=0.049 Sum_probs=65.8
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCC--HhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCC---ChhHHHHHHHHHH
Q 007288 186 ITGYAHSGNGYGGLGVFKEMLLEGVEMN--PYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGS---NLPVMNSILDMYC 260 (609)
Q Consensus 186 i~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~---~~~~~~~l~~~~~ 260 (609)
..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++...... +. +......+..++.
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHH
Confidence 4456667888888888888888776654 3345566677778888888888888777652 11 2223333444566
Q ss_pred hcCCHHHHHHHHHhcCCCChhHHHHHHHHH
Q 007288 261 RFDCLSDANQYFDEMTEKDLITWNTIIAGY 290 (609)
Q Consensus 261 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 290 (609)
..|+.++|++.+-....++...|.--|..|
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777766554444444444444444
No 203
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.72 E-value=0.82 Score=46.39 Aligned_cols=408 Identities=13% Similarity=0.085 Sum_probs=219.3
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcch-HHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHH
Q 007288 76 DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFT-LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLM 154 (609)
Q Consensus 76 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 154 (609)
+-..|..+|.---.....+.+..++..+... .|-..- |.....-=.+.|..+.+.++|++.+.. ++.+...|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 3445666666554455556666667766643 343332 233333335667777788888877754 445666777777
Q ss_pred HHHHhcCCCHHHHHHHHccCCC------CChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHH---
Q 007288 155 DVYATCCISMDNARLVFNDMKW------KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA--- 225 (609)
Q Consensus 155 ~~~~~~g~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~--- 225 (609)
..+....++.+.....|+.... .+...|...|.--..++++.....+|+..++. ....|+.....+.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHH
Confidence 6666655577777777776654 25667888888888888888888888888764 1222222222211
Q ss_pred cc------CCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHhcCCCChhHHHHHHHHHHhCCchHH
Q 007288 226 ST------GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFD-CLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSEC 298 (609)
Q Consensus 226 ~~------g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~a 298 (609)
.. ...+++.++-...... ......+ ..+......+....+... .+++
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~-------------~~~~~~~~~~e~~~~~v~~~~~~s~~-------------l~~~ 250 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAER-------------SKITHSQEPLEELEIGVKDSTDPSKS-------------LTEE 250 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhh-------------hhcccccChhHHHHHHHhhccCccch-------------hhHH
Confidence 11 1111111111111110 0000000 011111111111111000 1111
Q ss_pred HHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHh-------CCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 007288 299 LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-------GLDGNLALANALIDMYAKCGNISDSQKI 371 (609)
Q Consensus 299 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 371 (609)
.....+... ..-.++............++.-++. -..++..+|+..+.--.+.|+.+.+.-+
T Consensus 251 ~~~l~~~~~-----------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l 319 (577)
T KOG1258|consen 251 KTILKRIVS-----------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFIL 319 (577)
T ss_pred HHHHHHHHH-----------HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHH
Confidence 111100000 0000000111111111112211111 1123455677777777788888888888
Q ss_pred HHhcCCCCc---chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCC
Q 007288 372 FSEMSDRDL---VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR--PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV 446 (609)
Q Consensus 372 ~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 446 (609)
|+.+.-|-. ..|-..+.-....|+.+-|..++....+--++ |....+.+.+ +...|+++.|..+++.....-
T Consensus 320 ~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~- 396 (577)
T KOG1258|consen 320 FERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEY- 396 (577)
T ss_pred HHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhC-
Confidence 888875532 34555555555568888888888777664332 2222333332 445779999999999995533
Q ss_pred CCC-hhHHHHHHHHHhhcCCHHHHH---HHHHhC-CCCCCHhhHHHHH-----HHHHhCCChHHHHHHHHHHhccCCCCc
Q 007288 447 NPN-KEIYGCVVDLLGRAGRVKEAY---ELIKSM-PFKPDESVWGPLL-----GACKEHRLPNLGKLAALRVLDLKPNMM 516 (609)
Q Consensus 447 ~~~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l~-----~~~~~~~~~~~a~~~~~~~~~~~p~~~ 516 (609)
|+ ..+-..-+....+.|..+.+. +++... +.+-+......+. -.+.-.++.+.|..++.++.+..|++.
T Consensus 397 -pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k 475 (577)
T KOG1258|consen 397 -PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCK 475 (577)
T ss_pred -CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccH
Confidence 33 333334456667888888887 555444 2222333333333 224567789999999999999999999
Q ss_pred chHHHHHHHHHhcCC
Q 007288 517 GTYIILSNIYAAEGK 531 (609)
Q Consensus 517 ~~~~~l~~~~~~~g~ 531 (609)
..|..+++.....+.
T Consensus 476 ~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 476 VLYLELIRFELIQPS 490 (577)
T ss_pred HHHHHHHHHHHhCCc
Confidence 999999988887763
No 204
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.71 E-value=0.0073 Score=59.00 Aligned_cols=65 Identities=12% Similarity=-0.135 Sum_probs=46.1
Q ss_pred CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 481 DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG---TYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 481 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
+...|+.+..+|.+.|++++|+..++++++++|++.. +|..++.+|...|+.++|+..+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556666777777777777777777777777776653 3777777777777777777777777664
No 205
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.015 Score=55.47 Aligned_cols=66 Identities=12% Similarity=0.014 Sum_probs=58.7
Q ss_pred HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 482 ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 482 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
..++..|..++.+.+.+..|+....++++++|+|......-+.+|...|+++.|+..|+++.+..+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP 322 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence 446667778889999999999999999999999999999999999999999999999999988544
No 206
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.69 E-value=0.32 Score=47.17 Aligned_cols=160 Identities=16% Similarity=0.103 Sum_probs=96.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC-------CcchHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007288 354 ALIDMYAKCGNISDSQKIFSEMSDR-------DLVTWTSMMIGYGA---HGHGKEAIELFDEMVKSGVRPDRIVFMAVLT 423 (609)
Q Consensus 354 ~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 423 (609)
.++-.|....+++...++.+.+... ....--....++.+ .|+.++|++++..+....-.++..+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444577777788888888777753 11112223445556 7888888888888666656777788877776
Q ss_pred HHhc---------cCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHH----HHHHHH---Hh-C---C---CCC
Q 007288 424 ACSH---------AGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK----EAYELI---KS-M---P---FKP 480 (609)
Q Consensus 424 ~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~~-~---~---~~p 480 (609)
.|-. ....++|+..|.+.-+ +.|+...--.++..+...|... +..++- .. . + -..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 6532 2246777777776632 2233322222222333333311 222222 11 1 1 224
Q ss_pred CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC
Q 007288 481 DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM 515 (609)
Q Consensus 481 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 515 (609)
+--.+.+++.++.-.|+.++|.+.++++.++.|+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 55566788899999999999999999999988753
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.16 Score=45.62 Aligned_cols=138 Identities=9% Similarity=0.071 Sum_probs=95.2
Q ss_pred HHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHH-----HHH
Q 007288 282 TWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA-----NAL 355 (609)
Q Consensus 282 ~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~l 355 (609)
.-+.++..+...+ +.-.+..+++.++...+-++.....+.+...+.|+.+.|...|++..+..-..+.... ...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3445556666666 7777888888888766667778888888888999999999999987765433333333 333
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007288 356 IDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAV 421 (609)
Q Consensus 356 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 421 (609)
...|.-.+++..|...|.++.. .|+...|.-.-+..-.|+...|++.++.|... .|...+-+++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 4455667788888888888774 34455555555556668888899998888874 4555444433
No 208
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.65 E-value=0.014 Score=55.38 Aligned_cols=127 Identities=12% Similarity=0.050 Sum_probs=78.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHh----hhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-------C-CCCCHh
Q 007288 417 VFMAVLTACSHAGLVDEGLKYFKSM----NDYNVNP-NKEIYGCVVDLLGRAGRVKEAYELIKSM-------P-FKPDES 483 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~~~ 483 (609)
.|..|...|.-.|+++.|+...+.- .+.|-+. ....+..+.+++.-.|+++.|.+.|+.. + ......
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555555566667788777665432 2333211 1335566777777778888887777654 2 112334
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHhcc------CCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 007288 484 VWGPLLGACKEHRLPNLGKLAALRVLDL------KPNMMGTYIILSNIYAAEGKWEEFAKFRKIMR 543 (609)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 543 (609)
+..+|.+.|.-...+++|+..+.+=+.+ .......+.+|+++|...|..++|..+...-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4556666666666777777766654332 12345677888888888888888877765554
No 209
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.59 E-value=1.1 Score=46.16 Aligned_cols=192 Identities=7% Similarity=-0.026 Sum_probs=102.0
Q ss_pred cCChhHHHHhhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHH-CCCCC--------CcchHHHHHHHhhCCCChH
Q 007288 59 EGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR-NEVNP--------NAFTLSSVLKACKGMKSLS 129 (609)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p--------~~~t~~~ll~~~~~~~~~~ 129 (609)
.=.+++|.++.+.- |.+..|..+.......-.++-|...|-+... .|++. +...-..=+ -+--|+++
T Consensus 676 ~vgledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei--~~~~g~fe 751 (1189)
T KOG2041|consen 676 AVGLEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEI--SAFYGEFE 751 (1189)
T ss_pred HhchHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhH--hhhhcchh
Confidence 33477777776664 4455687777766665566666666655543 23321 000011111 23347899
Q ss_pred HHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCC-----ChhhHHHHHHHHHhcCChhhHHHHHHH
Q 007288 130 NAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK-----NDVSWTTLITGYAHSGNGYGGLGVFKE 204 (609)
Q Consensus 130 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~ 204 (609)
+|++++-.|.+..+ -+..+.+.| ++-...++++.-... -..+|+.+...++....+++|.+.|..
T Consensus 752 eaek~yld~drrDL---------Aielr~klg-DwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 752 EAEKLYLDADRRDL---------AIELRKKLG-DWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred Hhhhhhhccchhhh---------hHHHHHhhh-hHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99988877765432 356666777 777777777654322 234577777777777777777766654
Q ss_pred HHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 007288 205 MLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK 278 (609)
Q Consensus 205 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 278 (609)
-... ...+.++.+..++++-+.+.+ .++.+....-.+..++.+.|.-++|.+.|-+...|
T Consensus 822 ~~~~---------e~~~ecly~le~f~~LE~la~-----~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p 881 (1189)
T KOG2041|consen 822 CGDT---------ENQIECLYRLELFGELEVLAR-----TLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLP 881 (1189)
T ss_pred ccch---------HhHHHHHHHHHhhhhHHHHHH-----hcCcccchHHHHHHHHHhhchHHHHHHHHHhccCc
Confidence 3211 112222333233332222221 13444445555555555555555555555444433
No 210
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.59 E-value=0.068 Score=50.97 Aligned_cols=129 Identities=12% Similarity=-0.008 Sum_probs=86.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHh----hhcCC-CCChh
Q 007288 382 TWTSMMIGYGAHGHGKEAIELFDEMV----KSGVR-PDRIVFMAVLTACSHAGLVDEGLKYFKSM----NDYNV-NPNKE 451 (609)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~-~~~~~ 451 (609)
.|..|...|.-.|+++.|+..-+.-. +-|-+ .....+..+..++.-.|+++.|.+.|+.. ++.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45555556666778888776543322 22322 12347777888888888888888888765 22221 22344
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhc
Q 007288 452 IYGCVVDLLGRAGRVKEAYELIKSM--------PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD 510 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 510 (609)
+..+|.+.|.-...+++|+.++.+- ...-....+.+|..++...|..++|....+..++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5667888888888888888877654 1223556777888889889999988888777655
No 211
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.57 E-value=0.035 Score=51.61 Aligned_cols=100 Identities=11% Similarity=0.038 Sum_probs=64.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HhhHHHHH
Q 007288 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN--KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD----ESVWGPLL 489 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 489 (609)
.|...+....+.|++++|+..|+.+.+...... ...+--+...|...|++++|...|+.+ ...|+ ...+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 444444444556777777777777755332111 235556777777888888888877776 21222 33444455
Q ss_pred HHHHhCCChHHHHHHHHHHhccCCCCc
Q 007288 490 GACKEHRLPNLGKLAALRVLDLKPNMM 516 (609)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~~~~~~p~~~ 516 (609)
..+...|+.+.|...++++++..|++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 667788888999999998888888543
No 212
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.74 Score=44.41 Aligned_cols=269 Identities=10% Similarity=0.003 Sum_probs=136.0
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 007288 186 ITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCL 265 (609)
Q Consensus 186 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 265 (609)
-..+.+..++.+|+..+...++.... +..-|..-...+...|+++.+.--.+.-++.. +-....+.-.-.++...++.
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDL 133 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHH
Confidence 34556667777888888887776433 23334444444444555555543333333221 11122233334444444555
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhCCchHHHHHHHHhHHCCC-CCCHHhHHHHHHH-HHhhccHHHHHHHHHHHHHh
Q 007288 266 SDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERF-SPNCFTFTSIIAA-CATLAALSCGQQVHAGIVRR 343 (609)
Q Consensus 266 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~-~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~ 343 (609)
.+|...++. ...+ ....++..++....... +|...++..+-.- +.-.|+.+.|.++-..+.+.
T Consensus 134 i~A~~~~~~-----~~~~----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl 198 (486)
T KOG0550|consen 134 IEAEEKLKS-----KQAY----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL 198 (486)
T ss_pred HHHHHHhhh-----hhhh----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc
Confidence 555554441 1111 00112222222222111 2333444333222 24566777776666665554
Q ss_pred CCCCchhHHHHHHH--HHHhcCCHHHHHHHHHhcCCCCcc---------------hHHHHHHHHHhcCCHHHHHHHHHHH
Q 007288 344 GLDGNLALANALID--MYAKCGNISDSQKIFSEMSDRDLV---------------TWTSMMIGYGAHGHGKEAIELFDEM 406 (609)
Q Consensus 344 ~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~---------------~~~~li~~~~~~g~~~~A~~~~~~m 406 (609)
.- ...+..+++ ++--.++.+.|...|++...-++. .|..-..-..+.|++..|.+.|.+.
T Consensus 199 d~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Ytea 275 (486)
T KOG0550|consen 199 DA---TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEA 275 (486)
T ss_pred cc---chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHh
Confidence 31 112222222 223356677777777776642221 1122223345778888888888888
Q ss_pred HHC---CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007288 407 VKS---GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN-KEIYGCVVDLLGRAGRVKEAYELIKSM 476 (609)
Q Consensus 407 ~~~---g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 476 (609)
+.. ..+|+...|.....+..+.|+..+|+.--+...+.+ +. ...|..-..++.-.++|++|.+-+++.
T Consensus 276 l~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 276 LNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--SSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred hcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 762 345566677777777788888888888777765532 11 122222334455567788887777766
No 213
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.56 E-value=0.4 Score=40.77 Aligned_cols=120 Identities=14% Similarity=0.184 Sum_probs=55.4
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHH
Q 007288 347 GNLALANALIDMYAKCGNISDSQKIFSEMSD----RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG---VRPDRIVFM 419 (609)
Q Consensus 347 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~ 419 (609)
|++..--.|.++..+.|+..+|...|++... .|....-.+.++....+++..|...++++-+.. -.|| +..
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 4444444455555555555555555554442 233444444444445555555555555554421 1222 223
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHH
Q 007288 420 AVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470 (609)
Q Consensus 420 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 470 (609)
.+.+.+...|++..|...|+.....- |+...--.....+.+.|+.++|.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHH
Confidence 34445555555555555555554433 23222222334445555544443
No 214
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.55 E-value=0.0043 Score=39.56 Aligned_cols=42 Identities=21% Similarity=0.314 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHH
Q 007288 483 SVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524 (609)
Q Consensus 483 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 524 (609)
.+|..+..++...|++++|+..++++++..|+|+..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 356778889999999999999999999999998888877764
No 215
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.44 E-value=0.01 Score=42.89 Aligned_cols=61 Identities=16% Similarity=0.190 Sum_probs=43.5
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcch
Q 007288 458 DLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 518 (609)
..|.+.+++++|+++++++ ...| +...|.....++.+.|++++|...++++++..|+++..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 4567778888888888777 4444 34455556677888888888888888888888865443
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.39 E-value=0.0055 Score=45.09 Aligned_cols=62 Identities=16% Similarity=0.130 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHhcc----CC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 483 SVWGPLLGACKEHRLPNLGKLAALRVLDL----KP---NMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 483 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
.+++.+...+...|++++|+..+++++++ ++ .-..++..++.+|...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35666777788888888888888887653 22 2255788899999999999999999988754
No 217
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.35 E-value=1.6 Score=45.46 Aligned_cols=114 Identities=16% Similarity=0.114 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 007288 414 DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACK 493 (609)
Q Consensus 414 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 493 (609)
...+.+--+.-+...|...+|.++-.+.+ -||...|..-+.+++..+++++-+++-+... .+..|.-+..+|.
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACL 755 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHH
Confidence 33455555666777888888888877653 3688888888889999999998888877753 2566777888999
Q ss_pred hCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 007288 494 EHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIM 542 (609)
Q Consensus 494 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 542 (609)
+.|+.++|...+-+.-. +.-.+.+|.+.|++.+|.+.--+-
T Consensus 756 ~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred hcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHHh
Confidence 99999988877654322 226788889999998888764433
No 218
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.32 E-value=1.1 Score=42.99 Aligned_cols=108 Identities=13% Similarity=0.036 Sum_probs=61.7
Q ss_pred CHHHHHHHHccCC---CCChhhHHHHHHHHH--hcCChhhHHHHHHHHHHCCCCCCHhhH----HHHHHHHHccCCchhH
Q 007288 163 SMDNARLVFNDMK---WKNDVSWTTLITGYA--HSGNGYGGLGVFKEMLLEGVEMNPYSF----SIAVRACASTGWVSFG 233 (609)
Q Consensus 163 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g~~p~~~t~----~~ll~~~~~~g~~~~a 233 (609)
+-..|.+.-.+.. ..|....-.|+.+.. -.|+++.|.+-|+.|.. |+.|- ..|.-..-+.|..+.|
T Consensus 99 da~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 99 DASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred chHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHH
Confidence 5555554443322 224443444443332 35777788888877765 23332 2333333466777777
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 007288 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276 (609)
Q Consensus 234 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 276 (609)
.+.-+..-... +.-...+...+...|..|+++.|+++.+.-.
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~ 215 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQR 215 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 77666655442 3335566777777888888888888777654
No 219
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.2 Score=46.34 Aligned_cols=103 Identities=19% Similarity=0.074 Sum_probs=73.0
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcC---CHHHHHHHHHhC-CCCCCHhhHHHH
Q 007288 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG---RVKEAYELIKSM-PFKPDESVWGPL 488 (609)
Q Consensus 413 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p~~~~~~~l 488 (609)
-|...|..|...|...|+++.|...|....+.. .++...+..+..++.... ...++.++|+++ ...|+...-..+
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 355688888888888888888888888885543 245666666666665433 355678888877 555655444444
Q ss_pred H-HHHHhCCChHHHHHHHHHHhccCCCCc
Q 007288 489 L-GACKEHRLPNLGKLAALRVLDLKPNMM 516 (609)
Q Consensus 489 ~-~~~~~~~~~~~a~~~~~~~~~~~p~~~ 516 (609)
+ ..+...|++.+|...++.+++..|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 4 678888888888888888888877543
No 220
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.09 E-value=0.025 Score=47.66 Aligned_cols=68 Identities=22% Similarity=0.159 Sum_probs=54.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCcccC
Q 007288 484 VWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG-----MGSKKEV 551 (609)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~ 551 (609)
....++..+...|+++.|...++.++..+|.+...|..++.+|...|+..+|.+.|+++.+ .|+.|.|
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 4455667788999999999999999999999999999999999999999999999999864 4665544
No 221
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.06 E-value=0.08 Score=42.82 Aligned_cols=51 Identities=16% Similarity=0.282 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh-hhcCCCCChhHHHHHHHHH
Q 007288 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLL 460 (609)
Q Consensus 410 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~ 460 (609)
...|+..+..+++.+|+..+++..|+++.+.. ...+++.+..+|..|++-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 35566667777777777777777777777766 5566666666666666443
No 222
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=96.06 E-value=0.006 Score=48.52 Aligned_cols=45 Identities=40% Similarity=0.725 Sum_probs=38.8
Q ss_pred ceeEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHcCcccCcccccccCCCC
Q 007288 552 GMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608 (609)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~ 608 (609)
+++|.+. |.|++|+.+||+. ++..++...||.|++..+.++++++
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e 46 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEE 46 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhh
Confidence 4578765 8999999999998 5678888999999999999988865
No 223
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.99 E-value=0.5 Score=42.37 Aligned_cols=141 Identities=13% Similarity=0.116 Sum_probs=71.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc
Q 007288 386 MMIGYGAHGHGKEAIELFDEMVKSGVR-P-DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463 (609)
Q Consensus 386 li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 463 (609)
....+...|++.+|.+.|+.+...-.. | -....-.++.++.+.|+++.|...++...+.-..-...-+...+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 344556677777777777777764211 1 11245556667777777777777777774433221111222222222111
Q ss_pred CCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcc-----------------hHHHHHHHH
Q 007288 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG-----------------TYIILSNIY 526 (609)
Q Consensus 464 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----------------~~~~l~~~~ 526 (609)
....... ......+....|...++.+++..|++.. --..++..|
T Consensus 91 ~~~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y 151 (203)
T PF13525_consen 91 KQIPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFY 151 (203)
T ss_dssp HHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111110 0011122334455555555555554332 223478889
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 007288 527 AAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 527 ~~~g~~~~A~~~~~~m~~~ 545 (609)
.+.|.+..|..-++.+.+.
T Consensus 152 ~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHH
Confidence 9999999999999999874
No 224
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.94 E-value=0.49 Score=42.40 Aligned_cols=163 Identities=12% Similarity=0.095 Sum_probs=91.7
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--CCc----chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhc
Q 007288 356 IDMYAKCGNISDSQKIFSEMSD--RDL----VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR--IVFMAVLTACSH 427 (609)
Q Consensus 356 ~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~ 427 (609)
...+...|++++|...|+.+.. |+. ...-.++.++.+.|+++.|...++++++. -|+. ..+...+.+.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHH
Confidence 3345566777777777777763 221 23445667788888888888888887764 2332 222222222221
Q ss_pred cC-------------CHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 007288 428 AG-------------LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKE 494 (609)
Q Consensus 428 ~~-------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 494 (609)
.. ...+|.. .+..++.-|=.+....+|...+..+...-. ..--.+...|.+
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~---------------~~~~li~~yP~S~y~~~A~~~l~~l~~~la-~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIE---------------EFEELIKRYPNSEYAEEAKKRLAELRNRLA-EHELYIARFYYK 153 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHH---------------HHHHHHHH-TTSTTHHHHHHHHHHHHHHHH-HHHHHHHHHHHC
T ss_pred HHhCccchhcccChHHHHHHHH---------------HHHHHHHHCcCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 11 1122222 344455555555556666555554410000 001123466889
Q ss_pred CCChHHHHHHHHHHhccCCCCcc---hHHHHHHHHHhcCChHHHH
Q 007288 495 HRLPNLGKLAALRVLDLKPNMMG---TYIILSNIYAAEGKWEEFA 536 (609)
Q Consensus 495 ~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~ 536 (609)
.|.+..|..-++.+++..|+... ....++.+|.+.|..+.|.
T Consensus 154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 99999999999999999986543 4566888999999888554
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.87 E-value=0.013 Score=43.14 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=12.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHh
Q 007288 417 VFMAVLTACSHAGLVDEGLKYFKSM 441 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~ 441 (609)
+++.+...|...|++++|+..|++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~a 31 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKA 31 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4445555555555555555555554
No 226
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.86 E-value=0.15 Score=42.87 Aligned_cols=70 Identities=16% Similarity=0.259 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh-----hhcCCCCChhHH
Q 007288 383 WTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-----NDYNVNPNKEIY 453 (609)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~ 453 (609)
...++..+...|++++|..+++.+.... +-+...|..++.++...|+..+|.+.|+.+ .+.|+.|+..+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4445566667778888888887777742 335567777788888888888887777765 245777766653
No 227
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.69 E-value=0.84 Score=36.47 Aligned_cols=141 Identities=14% Similarity=0.045 Sum_probs=87.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 007288 390 YGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469 (609)
Q Consensus 390 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 469 (609)
+.-.|..++..++..+.... .+..-++.+|--....-+-+-..+.++.. |--.|. ..+|+....
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDi----------s~C~NlKrV 75 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDI----------SKCGNLKRV 75 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-G----------GG-S-THHH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHH---hhhcCc----------hhhcchHHH
Confidence 34567888888888888763 34556666665555555555555555554 222222 234555555
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 007288 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSK 548 (609)
Q Consensus 470 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 548 (609)
..-+-.++ .+.......+.....+|+-+.-..++..+.+.+..++....-++.+|.+.|+..++.+++.+..++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 55555543 244455667788889999999889998887654457889999999999999999999999999999984
No 228
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.64 E-value=1.7 Score=39.51 Aligned_cols=197 Identities=18% Similarity=0.166 Sum_probs=122.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007288 349 LALANALIDMYAKCGNISDSQKIFSEMSD-----RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLT 423 (609)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 423 (609)
...+......+...+.+..+...+..... .....+......+...+++..+.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 34555566666667777776666665532 2334455555666666777777777777766433321 12222222
Q ss_pred -HHhccCCHHHHHHHHHHhhhcCC--CCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HhhHHHHHHHHHhCCC
Q 007288 424 -ACSHAGLVDEGLKYFKSMNDYNV--NPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD--ESVWGPLLGACKEHRL 497 (609)
Q Consensus 424 -~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~~~ 497 (609)
.+...|+++.|...+........ ......+......+...++.+.|...+.+. ...++ ...+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 56777788888888877744221 122333344444456677888888777776 33333 4566666677777778
Q ss_pred hHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 498 PNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 498 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
++.|...+.......|.....+..+...+...|.++++...+.+.....
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888888888877645566666666666677888887777776643
No 229
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.52 E-value=0.36 Score=39.53 Aligned_cols=89 Identities=16% Similarity=0.084 Sum_probs=58.0
Q ss_pred HHHHhhcCCHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcc---hHHHHHHHHHh
Q 007288 457 VDLLGRAGRVKEAYELIKSM----PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG---TYIILSNIYAA 528 (609)
Q Consensus 457 ~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~ 528 (609)
.....+.|++++|.+.|+.+ +..| ....-..|+.++.+.+++++|...+++.+++.|.++. ++...+-++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 34445778888888888877 3222 2344556678888888888888888888888885443 33334444444
Q ss_pred cCC---------------hHHHHHHHHHHHhC
Q 007288 529 EGK---------------WEEFAKFRKIMRGM 545 (609)
Q Consensus 529 ~g~---------------~~~A~~~~~~m~~~ 545 (609)
... ..+|..-|++++++
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 433 55666667766654
No 230
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.27 Score=47.34 Aligned_cols=95 Identities=15% Similarity=-0.003 Sum_probs=76.7
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 007288 451 EIYGCVVDLLGRAGRVKEAYELIKSM-PFK-PDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA 528 (609)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 528 (609)
.+++.+.-++.+.+++.+|++..++. ... +|....-.=..+|...|+++.|+..|+++++++|+|..+-..|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45666788899999999999998887 333 4566666667899999999999999999999999998888888888777
Q ss_pred cCChHHH-HHHHHHHHhC
Q 007288 529 EGKWEEF-AKFRKIMRGM 545 (609)
Q Consensus 529 ~g~~~~A-~~~~~~m~~~ 545 (609)
...+++. .++|..|-.+
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 7666555 7788888653
No 231
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.31 E-value=0.1 Score=51.35 Aligned_cols=62 Identities=15% Similarity=-0.011 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHh----hHHHHHHHHHhCCChHHHHHHHHHHhcc
Q 007288 450 KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDES----VWGPLLGACKEHRLPNLGKLAALRVLDL 511 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 511 (609)
...++.+..+|.+.|++++|+..|++. .+.|+.. +|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334444444444455555555544443 3344322 2444444555555555555555555443
No 232
>PRK11906 transcriptional regulator; Provisional
Probab=95.23 E-value=1.2 Score=44.30 Aligned_cols=145 Identities=12% Similarity=0.117 Sum_probs=97.7
Q ss_pred CHHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHhc---------cCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc
Q 007288 395 HGKEAIELFDEMVK-SGVRPDRI-VFMAVLTACSH---------AGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463 (609)
Q Consensus 395 ~~~~A~~~~~~m~~-~g~~p~~~-~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 463 (609)
..+.|+.+|.+... +.+.|+.. .|..+..++.. ..+..+|.++-++..+.+ +.|......+..++.-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 34567778888772 23566543 44444333322 234566777777777766 34777777788877888
Q ss_pred CCHHHHHHHHHhC-CCCCCH-hhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcc--hHHHHHHHHHhcCChHHHHHHH
Q 007288 464 GRVKEAYELIKSM-PFKPDE-SVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG--TYIILSNIYAAEGKWEEFAKFR 539 (609)
Q Consensus 464 g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~ 539 (609)
++++.|...|++. ...||. .+|......+.-.|+.++|.+.++++++++|.... .....++.|...+ .++|+.++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 8899999999988 566753 45555556677889999999999999999995433 3333444666554 57777776
Q ss_pred HH
Q 007288 540 KI 541 (609)
Q Consensus 540 ~~ 541 (609)
-+
T Consensus 431 ~~ 432 (458)
T PRK11906 431 YK 432 (458)
T ss_pred hh
Confidence 44
No 233
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.23 E-value=0.15 Score=46.16 Aligned_cols=109 Identities=15% Similarity=0.117 Sum_probs=80.7
Q ss_pred HHhhccCC--CCCcccHHHHHHHHHc-----CCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCC-----------
Q 007288 66 RTLFDEMP--ERDVVSWTVMIAGYTS-----FNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKS----------- 127 (609)
Q Consensus 66 ~~~~~~~~--~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~----------- 127 (609)
.+.|.... ++|-.+|-..+..+.. .+.++-....++.|.+.|+.-|..+|+.||+.+-+..-
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34555555 5677788888887754 35677777888999999999999999999998765432
Q ss_pred -----hHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccC
Q 007288 128 -----LSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM 174 (609)
Q Consensus 128 -----~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~ 174 (609)
-+-+.+++++|..+|+-||..+-..|+.++.+.+--..+..++.-.|
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 23467889999999999999999999999988762233444444344
No 234
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.20 E-value=3.5 Score=40.48 Aligned_cols=132 Identities=14% Similarity=0.070 Sum_probs=98.0
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhH-HHHHH
Q 007288 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVKSG-VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEI-YGCVV 457 (609)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~ 457 (609)
...|...+....+....+.|..+|-+..+.| +.++...+++++..++. |+...|..+|+.-... .||... -+..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3567777887788888889999999999888 66777888888886654 6778888888765331 234433 34566
Q ss_pred HHHhhcCCHHHHHHHHHhC--CCCCC--HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC
Q 007288 458 DLLGRAGRVKEAYELIKSM--PFKPD--ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
.-+.+.++-+.|..+|+.. .+..+ ...|..+|.--..-|+...+..+-+++.+.-|.
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 7778888988899888854 12222 567888888888888888888888888888883
No 235
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.15 E-value=1.4 Score=36.64 Aligned_cols=43 Identities=16% Similarity=0.168 Sum_probs=19.3
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhc
Q 007288 117 SVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160 (609)
Q Consensus 117 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 160 (609)
.++..+...+.......+++.+.+.+. .+....+.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 334444444444444444444444432 3444445555555443
No 236
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=2.1 Score=39.71 Aligned_cols=50 Identities=12% Similarity=0.085 Sum_probs=22.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007288 391 GAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441 (609)
Q Consensus 391 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 441 (609)
...|++.+|..+|....... .-+...-..+..+|...|+.+.|..++..+
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 34445555555555444421 111233334444445555555555555444
No 237
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.01 E-value=2.3 Score=41.48 Aligned_cols=164 Identities=11% Similarity=0.044 Sum_probs=102.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHhc---cCCHHHHHHHHHHhhhcCCCCChhHHHH
Q 007288 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSG---VRPDRIVFMAVLTACSH---AGLVDEGLKYFKSMNDYNVNPNKEIYGC 455 (609)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 455 (609)
+...++-+|....+++..+++++.+.... +.-....--...-++.+ .|+.++|++++..+....-.++..+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33456667999999999999999998742 11111222234445666 8999999999999655556778888887
Q ss_pred HHHHHh----h-----cCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhCCC-hH---HHHHHH----HHHhc---cCC-
Q 007288 456 VVDLLG----R-----AGRVKEAYELIKSM-PFKPDESVWGPLLGACKEHRL-PN---LGKLAA----LRVLD---LKP- 513 (609)
Q Consensus 456 l~~~~~----~-----~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~-~~---~a~~~~----~~~~~---~~p- 513 (609)
+...|- . ....++|++.|.+. ...|+..+=-.+...+...|. .+ +...+. ..+.+ ..+
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 776652 2 22477888888877 555654332222222222222 22 222222 11111 122
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 514 NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 514 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
.+--.+..++.++.-.|+++.|.+..++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 23334556888999999999999999999875
No 238
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.99 E-value=0.096 Score=44.90 Aligned_cols=90 Identities=16% Similarity=0.090 Sum_probs=63.9
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCC------HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 007288 458 DLLGRAGRVKEAYELIKSM-PFKPD------ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEG 530 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~~-~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 530 (609)
+-+.+.|++++|..-|.+. ..-|. .+.|..-..+..+.+.++.|+.-..++++++|....+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3445677777777766655 11121 2223333355778888888888888888888877778888888888888
Q ss_pred ChHHHHHHHHHHHhCCC
Q 007288 531 KWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 531 ~~~~A~~~~~~m~~~~~ 547 (609)
++++|++-|+++.+..+
T Consensus 183 k~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDP 199 (271)
T ss_pred hHHHHHHHHHHHHHhCc
Confidence 88888888888877544
No 239
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.97 E-value=0.52 Score=44.50 Aligned_cols=51 Identities=12% Similarity=0.062 Sum_probs=23.0
Q ss_pred HHHhCCChHHHHHHHHHHhcc--CCCCc----chHHHHHHHHHhcCChHHHHHHHHH
Q 007288 491 ACKEHRLPNLGKLAALRVLDL--KPNMM----GTYIILSNIYAAEGKWEEFAKFRKI 541 (609)
Q Consensus 491 ~~~~~~~~~~a~~~~~~~~~~--~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (609)
+++..|..-.|.+..+++.++ ...|. .....++++|...|+.+.|..-|+.
T Consensus 215 alR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 215 ALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 345555555555555544331 11122 2223355555555555555544443
No 240
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=1.6 Score=40.45 Aligned_cols=122 Identities=14% Similarity=0.080 Sum_probs=89.7
Q ss_pred HHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHH---HHHHHHhCCChH
Q 007288 423 TACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGP---LLGACKEHRLPN 499 (609)
Q Consensus 423 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~~~~~ 499 (609)
......|++.+|..+|+........ +...--.+..+|...|+.+.|..++..++..-...-+.. -+..+.+..+..
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3456789999999999998654433 356666789999999999999999999975544444444 233344444444
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 500 LGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 500 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
+... ++.-...+|+|...-..++..|...|+.++|.+.+=.+.+++
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3333 233455689999999999999999999999999887777653
No 241
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.91 E-value=0.22 Score=45.18 Aligned_cols=97 Identities=10% Similarity=0.086 Sum_probs=65.0
Q ss_pred HHHHHccCC--CCChhhHHHHHHHHHhc-----CChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC-----------
Q 007288 167 ARLVFNDMK--WKNDVSWTTLITGYAHS-----GNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG----------- 228 (609)
Q Consensus 167 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----------- 228 (609)
.+..|.... ++|-.+|-+.+..+... +.++=....++.|.+-|+.-|..+|+.|++.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345555555 56778888888777654 556666777888999999999999999998875543
Q ss_pred -----CchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 007288 229 -----WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFD 263 (609)
Q Consensus 229 -----~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 263 (609)
+-+-+..++++|..+|+-||-.+-..+++++++.+
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 12234556666666666666655555555555443
No 242
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.90 E-value=0.57 Score=46.46 Aligned_cols=150 Identities=12% Similarity=0.026 Sum_probs=90.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcC
Q 007288 385 SMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464 (609)
Q Consensus 385 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 464 (609)
.+|.-.-+..+...-++.-++..+ +.||..+.-.++ +-.......++.+++++..+.|-. .+..- ......|
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~----~lg~s-~~~~~~g 244 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA----SLGKS-QFLQHHG 244 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH----hhchh-hhhhccc
Confidence 344444566677777777777776 567665333332 223455678888888887554411 11000 0001111
Q ss_pred CHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC--CcchHHHHHHHHHhcCChHHHHHHHHHH
Q 007288 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN--MMGTYIILSNIYAAEGKWEEFAKFRKIM 542 (609)
Q Consensus 465 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m 542 (609)
. ..+.+.+-..+|-...-..|..++.+.|+.++|.+.++.+.+..|. +......|+++|...+.+.++..++.+-
T Consensus 245 ~---~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 245 H---FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred c---hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 1 1111222122334445556777888889999999999988877663 4567778889999999999998888886
Q ss_pred HhC
Q 007288 543 RGM 545 (609)
Q Consensus 543 ~~~ 545 (609)
-+.
T Consensus 322 dDi 324 (539)
T PF04184_consen 322 DDI 324 (539)
T ss_pred ccc
Confidence 443
No 243
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.90 E-value=0.31 Score=44.47 Aligned_cols=93 Identities=15% Similarity=0.122 Sum_probs=51.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC---CcchHHH
Q 007288 452 IYGCVVDLLGRAGRVKEAYELIKSM-------PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN---MMGTYII 521 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~ 521 (609)
.|+.-++.+ +.|++.+|...|... ...|+..- -|..++...|+++.|...|..+.+-.|+ .+..+.-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~y--WLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYY--WLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHH--HHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 344443333 455566665555544 12222222 2456666666666666666666665443 3445666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 522 LSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 522 l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
|+....+.|+.++|..+|+++.++-+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence 66666777777777777777666433
No 244
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.88 E-value=1.9 Score=35.81 Aligned_cols=125 Identities=12% Similarity=0.037 Sum_probs=64.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc
Q 007288 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463 (609)
Q Consensus 384 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 463 (609)
..++..+...+........++.+...+ ..+...++.++..|++.+ ..+....++. ..+.......+..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 345555555666666666666666655 245556666666666543 2333333331 01222233355666666
Q ss_pred CCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhC-CChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007288 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEH-RLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527 (609)
Q Consensus 464 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 527 (609)
+.++++.-++.+++. +...+..+... ++.+.|.+.+.+ +.++..|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 666666666666653 22223333333 566666665554 223445555554443
No 245
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.66 E-value=2.8 Score=37.58 Aligned_cols=199 Identities=14% Similarity=0.075 Sum_probs=107.2
Q ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--cchHHHHHHHHHhc
Q 007288 316 TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD--LVTWTSMMIGYGAH 393 (609)
Q Consensus 316 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~ 393 (609)
.|.....++....++++|...+.+..+. ...+...|. ....++.|.-+.+++.+-+ +..|+.....|..+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3444455666667777777766555431 111111111 1233444555555554322 23455556667777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh---cC--CCCChhHHHHHHHHHhhcCCHHH
Q 007288 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND---YN--VNPNKEIYGCVVDLLGRAGRVKE 468 (609)
Q Consensus 394 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~--~~~~~~~~~~l~~~~~~~g~~~~ 468 (609)
|.++-|-..+++.-+ ..+..++++|+++|++... .+ ...-...+......|.+..++++
T Consensus 105 GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred CCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence 776666666555443 1223344555555554411 11 01123345556667777778877
Q ss_pred HHHHHHhCC-------CCCCH-hhHHHHHHHHHhCCChHHHHHHHHHHhc----cCCCCcchHHHHHHHHHhcCChHHHH
Q 007288 469 AYELIKSMP-------FKPDE-SVWGPLLGACKEHRLPNLGKLAALRVLD----LKPNMMGTYIILSNIYAAEGKWEEFA 536 (609)
Q Consensus 469 A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~p~~~~~~~~l~~~~~~~g~~~~A~ 536 (609)
|-..+.+-+ .-|+. ..+.+.|-.+....++..|+..++..-. ..|.+..+...|+.+| ..|+.+++.
T Consensus 169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~ 247 (308)
T KOG1585|consen 169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIK 247 (308)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHH
Confidence 765554431 11222 2344555556667788888888887544 3566677888888886 456777766
Q ss_pred HHH
Q 007288 537 KFR 539 (609)
Q Consensus 537 ~~~ 539 (609)
.++
T Consensus 248 kvl 250 (308)
T KOG1585|consen 248 KVL 250 (308)
T ss_pred HHH
Confidence 553
No 246
>PRK15331 chaperone protein SicA; Provisional
Probab=94.54 E-value=1 Score=37.84 Aligned_cols=87 Identities=14% Similarity=0.012 Sum_probs=66.1
Q ss_pred HHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCCHhhHHHHHHHHHhCCChHH
Q 007288 423 TACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMP-F-KPDESVWGPLLGACKEHRLPNL 500 (609)
Q Consensus 423 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~~~~~~ 500 (609)
--+-..|++++|..+|+-+.-.++ .+..-+..|..++-..+++++|+..|.... . .-|+..+-....++...|+.+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 345578999999999998855553 356667778888888899999999887761 1 2244455567788889999999
Q ss_pred HHHHHHHHhc
Q 007288 501 GKLAALRVLD 510 (609)
Q Consensus 501 a~~~~~~~~~ 510 (609)
|+..|+.+++
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999998888
No 247
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.49 E-value=0.6 Score=37.79 Aligned_cols=96 Identities=16% Similarity=0.117 Sum_probs=61.7
Q ss_pred CHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh--cCCCCcchHHHHHHHH
Q 007288 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSE--MSDRDLVTWTSMMIGY 390 (609)
Q Consensus 313 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~ 390 (609)
|..++..++.++++.|+++....+.+..- |+..+... ..+. +.. -..|+..+..+++.+|
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~-------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD-------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc-------cCCCCCCCCCHHHHHHHHHHH
Confidence 45567777777777777777776665432 22222100 0000 000 1136778888899999
Q ss_pred HhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHh
Q 007288 391 GAHGHGKEAIELFDEMVK-SGVRPDRIVFMAVLTACS 426 (609)
Q Consensus 391 ~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~ 426 (609)
+..|++..|+++++...+ -+++.+..+|..|++=+.
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999999999999988876 467777788888886443
No 248
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.46 E-value=5.5 Score=39.26 Aligned_cols=125 Identities=17% Similarity=0.230 Sum_probs=71.5
Q ss_pred hcCC-HHHHHHHHHhcCC---CCcchHHHHH----HHHHh---cCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHH-
Q 007288 361 KCGN-ISDSQKIFSEMSD---RDLVTWTSMM----IGYGA---HGHGKEAIELFDEMVKSGVRPDRI----VFMAVLTA- 424 (609)
Q Consensus 361 ~~g~-~~~A~~~~~~~~~---~~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~- 424 (609)
+.|. -++|.++++.+.+ -|...-|.+. .+|.+ ...+.+-+.+-+-..+.|+.|-.. .-+.|..+
T Consensus 391 ~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAE 470 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAE 470 (549)
T ss_pred hcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHH
Confidence 3444 6677777777663 2333222221 22222 123344444444455567666433 33333332
Q ss_pred -HhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHH
Q 007288 425 -CSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489 (609)
Q Consensus 425 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 489 (609)
+...|++.++.-.-..+.+ +.|++.+|..+.-++....++++|.+++..+| |+...+++-+
T Consensus 471 yLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~dskv 532 (549)
T PF07079_consen 471 YLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDSKV 532 (549)
T ss_pred HHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHHHH
Confidence 4456777777766665554 56788888888777788888888888888775 4555555433
No 249
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.27 E-value=4.1 Score=37.05 Aligned_cols=55 Identities=18% Similarity=0.070 Sum_probs=44.2
Q ss_pred HHHHhCCChHHHHHHHHHHhccCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 490 GACKEHRLPNLGKLAALRVLDLKPNMMG---TYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
.-|.+.|.+..|..-++.+++.-|+... .+..+..+|...|..++|...-+-+..
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 5688999999999999999998775444 455688899999999999988665543
No 250
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.25 E-value=11 Score=41.93 Aligned_cols=139 Identities=14% Similarity=0.095 Sum_probs=66.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 007288 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434 (609)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 434 (609)
.++.--+.|.+.+|..++..=.+.-...|.+...-+.....+++|.-.|+..-+ ..-.+.+|..+|+|.+|
T Consensus 914 ~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~ 984 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREA 984 (1265)
T ss_pred HHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHH
Confidence 333334445555554444322221222333333334445566666555544322 12345566677777777
Q ss_pred HHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHH
Q 007288 435 LKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRV 508 (609)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 508 (609)
+.+..++..-. .--..+-..|+.-+...++.-+|-++..+....|.. .+..+++...+++|.++....
T Consensus 985 l~~a~ql~~~~-de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 985 LSLAAQLSEGK-DELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHhhcCCH-HHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHhc
Confidence 77776652210 001112245666777777777777777666433321 223344444455555544443
No 251
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.22 E-value=0.51 Score=37.51 Aligned_cols=89 Identities=17% Similarity=0.142 Sum_probs=52.3
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC----cchHHHHHHHHHhcCCh
Q 007288 459 LLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM----MGTYIILSNIYAAEGKW 532 (609)
Q Consensus 459 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~ 532 (609)
++...|+.+.|++.|.+. ..-| ....||.-..+++-+|+.++|+.-+++++++.-+. ...|..-+..|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 445566666666666554 2222 44556666666666666666666666666643221 12445566666667777
Q ss_pred HHHHHHHHHHHhCCC
Q 007288 533 EEFAKFRKIMRGMGS 547 (609)
Q Consensus 533 ~~A~~~~~~m~~~~~ 547 (609)
+.|..-|+...+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 777766666665554
No 252
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.00 E-value=3 Score=44.20 Aligned_cols=178 Identities=10% Similarity=0.008 Sum_probs=92.9
Q ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCch--hHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 007288 316 TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL--ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393 (609)
Q Consensus 316 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 393 (609)
+...-+..+.+..-++.|..+-+. .+..++. .......+-+.+.|++++|...|-+...--..+ .+|.-|...
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s--~Vi~kfLda 410 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS--EVIKKFLDA 410 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH--HHHHHhcCH
Confidence 344455556666666666555432 2222221 122223333445777777776665544211111 244555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 007288 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELI 473 (609)
Q Consensus 394 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 473 (609)
.+...-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+.-. .|.- ..-....+..+.+.+-.++|..+-
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHH
Confidence 5666666667777777654 34444566777777777777666655443 1211 111334556666667777776666
Q ss_pred HhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHH
Q 007288 474 KSMPFKPDESVWGPLLGACKEHRLPNLGKLAALR 507 (609)
Q Consensus 474 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 507 (609)
.+.+.. ... +--.+...+++++|.+.++.
T Consensus 487 ~k~~~h--e~v---l~ille~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 487 TKFKKH--EWV---LDILLEDLHNYEEALRYISS 515 (933)
T ss_pred HHhccC--HHH---HHHHHHHhcCHHHHHHHHhc
Confidence 655432 222 22234456677777766553
No 253
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.92 E-value=0.1 Score=30.79 Aligned_cols=31 Identities=19% Similarity=0.036 Sum_probs=19.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHhccCCC
Q 007288 484 VWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
+|..+..++...|++++|+..++++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4556666666777777777777777766664
No 254
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.80 E-value=0.15 Score=29.97 Aligned_cols=31 Identities=23% Similarity=0.111 Sum_probs=18.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHhccCCC
Q 007288 484 VWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
.|..+..++...|++++|++.++++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 3445556666666666666666666666664
No 255
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.64 E-value=0.89 Score=42.53 Aligned_cols=159 Identities=13% Similarity=-0.017 Sum_probs=113.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHH----HHHHHHHhhcCCH
Q 007288 391 GAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIY----GCVVDLLGRAGRV 466 (609)
Q Consensus 391 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~ 466 (609)
...|+..+|-..++++.+. .+.|...+...=.+|...|+...-...+++.... ..+|...| ..+.-++..+|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3568888888889998875 5566677777778899999988888888888432 12444333 3444566789999
Q ss_pred HHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC----CcchHHHHHHHHHhcCChHHHHHHHH
Q 007288 467 KEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN----MMGTYIILSNIYAAEGKWEEFAKFRK 540 (609)
Q Consensus 467 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (609)
++|.+.-++. .++| |.-.-.++...+...++.+++++...+-...-.. -..-|...+-.+...+.++.|.++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999998887 5554 4455566677788899999999987776543321 13345556777778899999999998
Q ss_pred HHHhCCCcccC
Q 007288 541 IMRGMGSKKEV 551 (609)
Q Consensus 541 ~m~~~~~~~~~ 551 (609)
+=+-+...++.
T Consensus 272 ~ei~k~l~k~D 282 (491)
T KOG2610|consen 272 REIWKRLEKDD 282 (491)
T ss_pred HHHHHHhhccc
Confidence 87654444433
No 256
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.58 E-value=8.2 Score=38.05 Aligned_cols=127 Identities=13% Similarity=0.131 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhcC-CCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhH-HHHHHHH
Q 007288 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYN-VNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDESVW-GPLLGAC 492 (609)
Q Consensus 416 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~ 492 (609)
..|...+.+..+..-++.|..+|-++.+.+ +.+++.++++++..++ .|+..-|..+|+-- ..-||...| +..+..+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 467778888888888999999999998888 6788899999998775 68888999999764 333555444 4556777
Q ss_pred HhCCChHHHHHHHHHHhccCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 007288 493 KEHRLPNLGKLAALRVLDLKP--NMMGTYIILSNIYAAEGKWEEFAKFRKIMR 543 (609)
Q Consensus 493 ~~~~~~~~a~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 543 (609)
..-++-+.|..+|+..++.-. .-...|..+++--..-|+.+.+..+=++|.
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 888999999999997655221 124577777777777788877777666665
No 257
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.55 E-value=2.4 Score=42.94 Aligned_cols=158 Identities=10% Similarity=-0.003 Sum_probs=104.1
Q ss_pred HHHcCCChhHHHHHHH--HHHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCC
Q 007288 86 GYTSFNCHNQAWTVFV--EMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163 (609)
Q Consensus 86 ~~~~~~~~~~a~~~~~--~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 163 (609)
...-.++++.+.++.+ ++.. .+ +....+.++.-+-+.|..+.|.++...- ..-.....++| +
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg-~ 333 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLG-N 333 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT--
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcC-C
Confidence 3355677777666654 2221 11 2445677777788888888887664322 23456677788 9
Q ss_pred HHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHh
Q 007288 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH 243 (609)
Q Consensus 164 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 243 (609)
++.|.++.+... +...|..|.....++|+++-|.+.|.+..+ |..|+-.+...|+.+.-.++.+.....
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 999999888876 666899999999999999999999988643 456666777888888888888877776
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 007288 244 GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276 (609)
Q Consensus 244 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 276 (609)
|- +|....++.-.|+.++..+++.+..
T Consensus 403 ~~------~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 403 GD------INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred cC------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 61 4555566666788888888877654
No 258
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.55 E-value=4.8 Score=41.39 Aligned_cols=87 Identities=18% Similarity=0.269 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC-CCc---------chHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007288 353 NALIDMYAKCGNISDSQKIFSEMSD-RDL---------VTWTSMMIGYGA----HGHGKEAIELFDEMVKSGVRPDRIVF 418 (609)
Q Consensus 353 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~---------~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~ 418 (609)
..+++..+=.|+-+.+++.+....+ .++ ..|+.++..++. ..+.+.|.+++..+.+. -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 3455555556666666666665543 111 123333333322 23445555555555542 3444433
Q ss_pred HHHH-HHHhccCCHHHHHHHHHHh
Q 007288 419 MAVL-TACSHAGLVDEGLKYFKSM 441 (609)
Q Consensus 419 ~~ll-~~~~~~~~~~~a~~~~~~~ 441 (609)
...- +.+...|++++|++.|+..
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a 293 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERA 293 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHh
Confidence 3222 3344455555555555544
No 259
>PRK11906 transcriptional regulator; Provisional
Probab=93.43 E-value=0.97 Score=44.79 Aligned_cols=118 Identities=9% Similarity=0.042 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHhh-hcCCCCC-hhHHHHHHHHHhh---------cCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCC
Q 007288 430 LVDEGLKYFKSMN-DYNVNPN-KEIYGCVVDLLGR---------AGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHR 496 (609)
Q Consensus 430 ~~~~a~~~~~~~~-~~~~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~ 496 (609)
..+.|..+|.+.. .....|+ ...|..+..++.. .....+|.++-++. ...| |......+..+..-.+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4567888888885 3334555 3334333333221 22344556666555 4444 5666666667777778
Q ss_pred ChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 497 LPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 497 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
+++.|...|+++..++|+.+.+|...+..+.-.|+.++|.+.+++..+..+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEP 403 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence 899999999999999999999999999999999999999999999665433
No 260
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.37 E-value=3.7 Score=41.61 Aligned_cols=157 Identities=13% Similarity=0.108 Sum_probs=80.4
Q ss_pred HHHHhcCChhhHHHHHH-HHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 007288 187 TGYAHSGNGYGGLGVFK-EMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCL 265 (609)
Q Consensus 187 ~~~~~~g~~~~a~~~~~-~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 265 (609)
....-.++++.+.++.. .-.-..++ ..-.+.+++-+-+.|..+.|.++...-. .-.+...+.|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCH
Confidence 33444566666655554 11111111 3335566666667777777766643321 234555677777
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhC
Q 007288 266 SDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344 (609)
Q Consensus 266 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 344 (609)
+.|.++.++.. +...|..|.....+.| .+-|.+.|.+..+ +..++-.+.-.|+.+.-.++.+.....|
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 77777665554 4556777777777777 7777777766542 3445555555666666666665555544
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 007288 345 LDGNLALANALIDMYAKCGNISDSQKIFSE 374 (609)
Q Consensus 345 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 374 (609)
- ++....++.-.|+.++..+++.+
T Consensus 404 ~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 D------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred C------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 23344444455666665555544
No 261
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.19 E-value=0.19 Score=30.18 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=21.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 007288 518 TYIILSNIYAAEGKWEEFAKFRKIMR 543 (609)
Q Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 543 (609)
+|..|+.+|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999999854
No 262
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.17 E-value=0.96 Score=41.38 Aligned_cols=60 Identities=13% Similarity=0.063 Sum_probs=29.8
Q ss_pred HHHHHhhcCCHHHHHHHHHhC----CCCCC-HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC
Q 007288 456 VVDLLGRAGRVKEAYELIKSM----PFKPD-ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM 515 (609)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 515 (609)
|..++...|++++|..+|..+ |..|. +..+-.|..+..+.|+.++|...++++++-.|+.
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 445555555555555554444 22221 2333344445555566666666666666655543
No 263
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.15 E-value=3.1 Score=34.21 Aligned_cols=114 Identities=10% Similarity=-0.006 Sum_probs=67.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCC
Q 007288 388 IGYGAHGHGKEAIELFDEMVKSGV--RPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465 (609)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 465 (609)
....+.|++++|.+.|+.+..+-. .-....-..|+.++.+.+++++|...+++.++........-|...+.+++.-..
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 344567888888888888776411 112235666777888888888888888888765544333445555555554443
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCc
Q 007288 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMM 516 (609)
Q Consensus 466 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 516 (609)
.+.++.-+- +..- ..+....|...|+.+++..|++.
T Consensus 98 ~~~~~~~~~--~~dr-------------D~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 98 DEGSLQSFF--RSDR-------------DPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred hhhHHhhhc--cccc-------------CcHHHHHHHHHHHHHHHHCcCCh
Confidence 332222211 1111 12235578888888888888653
No 264
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.14 E-value=10 Score=38.01 Aligned_cols=193 Identities=8% Similarity=0.017 Sum_probs=100.9
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007288 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSD--RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLT 423 (609)
Q Consensus 346 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 423 (609)
..|.....+++..++..-++.-.+.+-.+|.. .+-..|..++++|..+ ..+.-..+|+++.+..+ |...+.--+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHH
Confidence 34445555566666666666666666555552 3445666667777666 44666667776666432 3333333232
Q ss_pred HHhccCCHHHHHHHHHHhhhcCCCC-----ChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHhhHHHHHHHHHh
Q 007288 424 ACSHAGLVDEGLKYFKSMNDYNVNP-----NKEIYGCVVDLLGRAGRVKEAYELIKSM----PFKPDESVWGPLLGACKE 494 (609)
Q Consensus 424 ~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~ 494 (609)
.+...++.+.+..+|.++...=++- -..+|..|.... ..+.+..+.+..++ +...-.+.+.-+-.-|..
T Consensus 140 ~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 2333366666666666663322210 122344443322 23455555555444 222333444444455666
Q ss_pred CCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh--------------------cCChHHHHHHHHHHH
Q 007288 495 HRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA--------------------EGKWEEFAKFRKIMR 543 (609)
Q Consensus 495 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~~m~ 543 (609)
..++++|++++..+++.+..|.-+-..++.-+.. ..++-++..-|+...
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m 286 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLM 286 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHh
Confidence 7777777777776666655444444444444333 455666666666664
No 265
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.08 E-value=9.7 Score=37.49 Aligned_cols=149 Identities=9% Similarity=-0.009 Sum_probs=73.0
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC--hhHH
Q 007288 379 DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP---DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN--KEIY 453 (609)
Q Consensus 379 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~ 453 (609)
...+|..+...+.+.|.++.|...+.++...+... .......-.+.+-..|+..+|+..++...+..+..+ ....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 34566667777777777777777777776633111 222333334445566777777777776644222211 1111
Q ss_pred HHHHHHHhhcCCHHHHHHH-HHhCCCCCCHhhHHHHHHHHHh------CCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007288 454 GCVVDLLGRAGRVKEAYEL-IKSMPFKPDESVWGPLLGACKE------HRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526 (609)
Q Consensus 454 ~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~------~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 526 (609)
..+...+.. ..+..... ........-...+..+..-+.. .++.+.+...|..+.+..|.....|..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111111000 00000000 0000000001122222222223 37788888999999999997777777777766
Q ss_pred Hhc
Q 007288 527 AAE 529 (609)
Q Consensus 527 ~~~ 529 (609)
.+.
T Consensus 303 ~~~ 305 (352)
T PF02259_consen 303 DKL 305 (352)
T ss_pred HHH
Confidence 543
No 266
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.88 E-value=3.9 Score=42.05 Aligned_cols=127 Identities=11% Similarity=0.128 Sum_probs=72.5
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhC-CCCch-----hHHHHHHHHHHh----cCCHHHHHHHHHhcCC--CCcchHH
Q 007288 317 FTSIIAACATLAALSCGQQVHAGIVRRG-LDGNL-----ALANALIDMYAK----CGNISDSQKIFSEMSD--RDLVTWT 384 (609)
Q Consensus 317 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~----~g~~~~A~~~~~~~~~--~~~~~~~ 384 (609)
+..++....=.||-+.+.+.+....+.+ +.-.. -.|...+..++- ....+.|.++++.+.+ |+...|.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl 270 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFL 270 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 4455666666678888887777665532 22111 123333333322 4566778888887775 6665554
Q ss_pred HH-HHHHHhcCCHHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 007288 385 SM-MIGYGAHGHGKEAIELFDEMVKSG--V-RPDRIVFMAVLTACSHAGLVDEGLKYFKSMND 443 (609)
Q Consensus 385 ~l-i~~~~~~g~~~~A~~~~~~m~~~g--~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 443 (609)
-. ...+...|+.++|++.|++..... . +.....+--+...+.-..++++|...|..+.+
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 43 234566788888888888655311 0 11222444455556666777777777777744
No 267
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.84 E-value=1.9 Score=41.05 Aligned_cols=62 Identities=10% Similarity=0.056 Sum_probs=38.2
Q ss_pred hHHHHHHHHhHHCCCCCCH--HhHHHHHHHHHhhcc--HHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007288 296 SECLNMFSKMKSERFSPNC--FTFTSIIAACATLAA--LSCGQQVHAGIVRRGLDGNLALANALID 357 (609)
Q Consensus 296 ~~a~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 357 (609)
+.+...|+.+.+.|+..+. .....++..+..... ...+..+++.+.+.|+++....|..+.-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 5566777777777765533 333444444332222 4577788888888888877777665543
No 268
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.79 E-value=3.2 Score=35.31 Aligned_cols=136 Identities=7% Similarity=-0.071 Sum_probs=78.7
Q ss_pred HHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCC
Q 007288 97 WTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW 176 (609)
Q Consensus 97 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~ 176 (609)
.+.++.+.+.++.|+...+..++..+.+.|++.. +.+++..++-+|.......+-.+.. ....+.++=-+|..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~---~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN---QYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc---cChHHHHHHHHHHH
Confidence 4555666677888888888888888888887654 4455566665555544443322222 22223333233332
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHh
Q 007288 177 KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH 243 (609)
Q Consensus 177 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 243 (609)
+=...+..++..+...|++-+|+++.+..... +...-..++.+..+.+|...-..+++.....
T Consensus 87 RL~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 87 RLGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred HhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 32335667777888888888888887664221 2223344556666666665555555555443
No 269
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.74 E-value=0.56 Score=43.53 Aligned_cols=61 Identities=15% Similarity=0.139 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 484 VWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
++..++..+...|+++.+...+++++..+|-+...|..+..+|.+.|+...|+..|+++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4455566667777777777777777777777777777777777777777777777777754
No 270
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.70 E-value=0.35 Score=38.43 Aligned_cols=55 Identities=16% Similarity=-0.086 Sum_probs=51.8
Q ss_pred HHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 490 GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
-+....|+.+.|++.|.+++.+-|..+..|+.-+.+|.-+|+.++|+.-+++..+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999998877
No 271
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.64 E-value=9.6 Score=36.30 Aligned_cols=62 Identities=8% Similarity=0.161 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCC--HHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 007288 397 KEAIELFDEMVKSGVRPDRI--VFMAVLTACSHAGL--VDEGLKYFKSMNDYNVNPNKEIYGCVVD 458 (609)
Q Consensus 397 ~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 458 (609)
+.++.+|+.+.+.|+..+.. ....++..+..... ...+.++++.+.+.|+++....|..+.-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 56677788888877766543 33444433332222 3467788888888888888777765543
No 272
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.61 E-value=7.6 Score=35.00 Aligned_cols=199 Identities=16% Similarity=0.126 Sum_probs=132.0
Q ss_pred HHhHHHHHHHHHhhccHHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCc-chHHHHHH-
Q 007288 314 CFTFTSIIAACATLAALSCGQQVHAGIVRR-GLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--RDL-VTWTSMMI- 388 (609)
Q Consensus 314 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~- 388 (609)
...+......+...+....+...+...... ........+..+...+...+++..+...+..... ++. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 344455555556666666666666555442 2334445555566666667777777777777664 221 22333333
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcC
Q 007288 389 GYGAHGHGKEAIELFDEMVKSGVRP----DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464 (609)
Q Consensus 389 ~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 464 (609)
.+...|+++.|...+.+... ..| ....+......+...++.+.+...+..............+..+...+...+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 139 ALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 67888999999999998865 333 233444445556778899999999998866432214677778888888889
Q ss_pred CHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC
Q 007288 465 RVKEAYELIKSM-PFKPD-ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 465 ~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
+++.|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999988877 44454 344555555555777899999999999998885
No 273
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.19 E-value=10 Score=38.10 Aligned_cols=96 Identities=15% Similarity=0.155 Sum_probs=61.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhcCCC-CChhHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCC--HhhHHHHHHHHH
Q 007288 419 MAVLTACSHAGLVDEGLKYFKSMNDYNVN-PNKEIYGCVVDLLGRAGRVKEAYELIKSMP-F-KPD--ESVWGPLLGACK 493 (609)
Q Consensus 419 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~--~~~~~~l~~~~~ 493 (609)
..+..++.+.|+.++|++.+++|.+.... -+..+...|+.+|...+.+.++..++.+.. + -|. ..+|+..+-..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 44566667788888888888888543322 234466678888888888888888888773 1 132 345555543332
Q ss_pred hCCC---------------hHHHHHHHHHHhccCCC
Q 007288 494 EHRL---------------PNLGKLAALRVLDLKPN 514 (609)
Q Consensus 494 ~~~~---------------~~~a~~~~~~~~~~~p~ 514 (609)
.-++ ...|.+.+.++.+.+|.
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 2222 23466788888887774
No 274
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.14 E-value=0.3 Score=30.94 Aligned_cols=31 Identities=13% Similarity=0.285 Sum_probs=28.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 517 GTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
.++..++.+|.+.|++++|++++++..+..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 5788999999999999999999999998655
No 275
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.06 E-value=5.4 Score=32.09 Aligned_cols=65 Identities=11% Similarity=0.114 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCC
Q 007288 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN 447 (609)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 447 (609)
.....+..+...|+-+.-.+++.++.+. -.+++.....+..+|.+.|+..++.+++.++-+.|++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3455567777888888888888887653 3677777778888888888888888888888766653
No 276
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.93 E-value=20 Score=38.39 Aligned_cols=49 Identities=14% Similarity=-0.044 Sum_probs=33.1
Q ss_pred cccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCC
Q 007288 77 VVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMK 126 (609)
Q Consensus 77 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 126 (609)
...-=.+|-.+.+.|.+++|.++.+.... ........|...+..+....
T Consensus 111 ~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 111 GDPIWALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp TEEHHHHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTT
T ss_pred CCccHHHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCC
Confidence 33444677788899999999998855554 34556677788888886653
No 277
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.80 E-value=5.7 Score=37.44 Aligned_cols=178 Identities=12% Similarity=0.002 Sum_probs=119.5
Q ss_pred HhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHhccCCHH
Q 007288 360 AKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVF----MAVLTACSHAGLVD 432 (609)
Q Consensus 360 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~ll~~~~~~~~~~ 432 (609)
.-.|+..+|-..++++.+ .|...++--=.+|...|+.+.-...+++..-. ..||...| ..+.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 346777787778888775 36677777778899999999999999988764 34554333 33445567899999
Q ss_pred HHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC------HhhHHHHHHHHHhCCChHHHHHHHH
Q 007288 433 EGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD------ESVWGPLLGACKEHRLPNLGKLAAL 506 (609)
Q Consensus 433 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~ 506 (609)
+|.+.-++..+.+ +.|...-.++...+.-.|++.++.+++.+-.-.-+ .-.|-...-.+...+.++.|+++|.
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999987765 44777777888899999999999999988631111 0011112223556689999999998
Q ss_pred HH--hccCCCCcchHH---HHHHHHHhcCChHHHHHHH
Q 007288 507 RV--LDLKPNMMGTYI---ILSNIYAAEGKWEEFAKFR 539 (609)
Q Consensus 507 ~~--~~~~p~~~~~~~---~l~~~~~~~g~~~~A~~~~ 539 (609)
.- .++..+|..... .+-.+..+.-.|.+-..+-
T Consensus 272 ~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la 309 (491)
T KOG2610|consen 272 REIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLA 309 (491)
T ss_pred HHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhh
Confidence 64 346667764333 2333334444444444333
No 278
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.69 E-value=22 Score=38.23 Aligned_cols=54 Identities=13% Similarity=0.095 Sum_probs=35.7
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhc
Q 007288 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD 510 (609)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 510 (609)
++..+....+.+.+..+.+..+-. ++..|..++..+.+.+..+.-.+...++++
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 455666677777777777777533 677777777777777766655555544433
No 279
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.62 E-value=7.9 Score=36.99 Aligned_cols=217 Identities=9% Similarity=0.093 Sum_probs=122.7
Q ss_pred HhcCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHhCC-chHHHHHHHHhHHC--CCCCC---HHhHHHHHHHHHhh
Q 007288 260 CRFDCLSDANQYFDEMTEK------DLITWNTIIAGYEKSG-SSECLNMFSKMKSE--RFSPN---CFTFTSIIAACATL 327 (609)
Q Consensus 260 ~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~--~~~p~---~~t~~~ll~~~~~~ 327 (609)
....+.++|+..+.....+ -..++..+..+.+..| +++++..--.-++. ...-. -..|..+..+..+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777776665442 1234556666677777 66655432211110 01111 12344444444455
Q ss_pred ccHHHHHHHHHHHHHh-CCCC---chhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C--CcchHHHHHHHHHhcC
Q 007288 328 AALSCGQQVHAGIVRR-GLDG---NLALANALIDMYAKCGNISDSQKIFSEMSD-------R--DLVTWTSMMIGYGAHG 394 (609)
Q Consensus 328 ~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g 394 (609)
.++.+++.+-+.-... |..+ ......++..++.-.+.++++++.|+...+ + ....+..|...|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 5555555554433221 1111 123445567777777888888888877652 2 2346888888888888
Q ss_pred CHHHHHHHHHHHHH----CCCCCCHHHH-----HHHHHHHhccCCHHHHHHHHHHhhh----cCCCC-ChhHHHHHHHHH
Q 007288 395 HGKEAIELFDEMVK----SGVRPDRIVF-----MAVLTACSHAGLVDEGLKYFKSMND----YNVNP-NKEIYGCVVDLL 460 (609)
Q Consensus 395 ~~~~A~~~~~~m~~----~g~~p~~~~~-----~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~ 460 (609)
++++|.-...+..+ .|+.--...| ..+.-++...|....|.+.-++..+ .|-++ -......+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 99988877766654 2222222222 2344466677877777777776633 33222 123345677888
Q ss_pred hhcCCHHHHHHHHHhC
Q 007288 461 GRAGRVKEAYELIKSM 476 (609)
Q Consensus 461 ~~~g~~~~A~~~~~~~ 476 (609)
...|+.+.|..-|+..
T Consensus 257 R~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQA 272 (518)
T ss_pred HhcccHhHHHHHHHHH
Confidence 8888888888877765
No 280
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.43 E-value=41 Score=40.92 Aligned_cols=64 Identities=6% Similarity=-0.074 Sum_probs=56.6
Q ss_pred HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 482 ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 482 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
..+|....+.++..|.++.|....-.+.+..+ +..+.-.+..+.+.|+...|+.++++-.+...
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 56788888999999999999999998888876 67899999999999999999999999986544
No 281
>PRK09687 putative lyase; Provisional
Probab=91.33 E-value=13 Score=35.12 Aligned_cols=74 Identities=11% Similarity=0.069 Sum_probs=37.1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007288 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTAC 425 (609)
Q Consensus 347 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 425 (609)
++..+-...+.++++.|+.+....+.+.+..++ .....+.++...|.. +|+..+..+.+. .||...-...+.+|
T Consensus 204 ~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 344445555555666665433333333333333 223455666666664 566666666653 34555544444444
No 282
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.20 E-value=30 Score=38.87 Aligned_cols=150 Identities=14% Similarity=0.139 Sum_probs=78.3
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHH----HhhccHHHHHHHH
Q 007288 263 DCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAAC----ATLAALSCGQQVH 337 (609)
Q Consensus 263 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~----~~~~~~~~a~~~~ 337 (609)
++++.|+.-+.++. ...|...+.---+.+ +.+|+.++ .|+...+..+..+| .....++.|--.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 44555555555544 112333333333444 66666554 35555555444443 3345555555555
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcch---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007288 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVT---WTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414 (609)
Q Consensus 338 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 414 (609)
...-+. .--+.+|..+|+|.+|..+-.++..+-... -..|+.-+...+++-+|-++..+.... |
T Consensus 963 e~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~- 1029 (1265)
T KOG1920|consen 963 ERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P- 1029 (1265)
T ss_pred HHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-
Confidence 443221 234556667777777777777666432222 245666677777777777777766542 1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHH
Q 007288 415 RIVFMAVLTACSHAGLVDEGLKYFKS 440 (609)
Q Consensus 415 ~~~~~~ll~~~~~~~~~~~a~~~~~~ 440 (609)
.-.+..+|+...+++|+++-..
T Consensus 1030 ----~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1030 ----EEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred ----HHHHHHHhhHhHHHHHHHHHHh
Confidence 1223334555566666655443
No 283
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.92 E-value=1.9 Score=36.38 Aligned_cols=125 Identities=9% Similarity=-0.024 Sum_probs=65.8
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCcc-hHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcch-hhHHH--HHHHhcCCC
Q 007288 88 TSFNCHNQAWTVFVEMVRNEVNPNAF-TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYV-ENSLM--DVYATCCIS 163 (609)
Q Consensus 88 ~~~~~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll--~~~~~~g~~ 163 (609)
.+.+..++|+.-|..+.+.|..-=.. .--.+.......|+...|...|++.-+....|...- ...|= -.+...| .
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~g-s 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNG-S 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccc-c
Confidence 45566666777776666654321100 001111224556666667666666655544443331 11111 1233445 6
Q ss_pred HHHHHHHHccCCCC----ChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC
Q 007288 164 MDNARLVFNDMKWK----NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMN 213 (609)
Q Consensus 164 ~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 213 (609)
+++.....+-+..+ -...-.+|.-+-.+.|++..|.+.|..+......|.
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 66666666655432 123345566666777888888888887766433443
No 284
>PRK09687 putative lyase; Provisional
Probab=90.91 E-value=15 Score=34.84 Aligned_cols=17 Identities=0% Similarity=-0.054 Sum_probs=7.6
Q ss_pred CHHHHHHHHHHHhccCC
Q 007288 414 DRIVFMAVLTACSHAGL 430 (609)
Q Consensus 414 ~~~~~~~ll~~~~~~~~ 430 (609)
+..+-...+.++.+.++
T Consensus 205 ~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD 221 (280)
T ss_pred ChHHHHHHHHHHHccCC
Confidence 33444444444444444
No 285
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.80 E-value=0.56 Score=43.89 Aligned_cols=109 Identities=14% Similarity=0.028 Sum_probs=74.6
Q ss_pred HHHHhccCCHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHhhHHHHHHHHHhCCCh
Q 007288 422 LTACSHAGLVDEGLKYFKSMNDYNVNP-NKEIYGCVVDLLGRAGRVKEAYELIKSM-PFK-PDESVWGPLLGACKEHRLP 498 (609)
Q Consensus 422 l~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~ 498 (609)
..-|.+.|.+++|+.+|...... .| |..++..-..+|.+..++..|..=.+.. .+. .-...|..-..+-...|+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 55688899999999999887553 34 7777777888999999988877666554 111 1123444444555567888
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHH
Q 007288 499 NLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFA 536 (609)
Q Consensus 499 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 536 (609)
.+|..-++.++++.|.+.. |-..|.......++.
T Consensus 182 ~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIE----LKKSLARINSLRERK 215 (536)
T ss_pred HHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhh
Confidence 8999999999999997543 333444444444443
No 286
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=90.80 E-value=18 Score=35.70 Aligned_cols=70 Identities=20% Similarity=0.331 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 007288 353 NALIDMYAKCGNISDSQKIFSEMSDR---DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS 426 (609)
Q Consensus 353 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 426 (609)
..|+.-|...|++.+|.+.++++.-| ..+.+.+++.+.-+.|+-...+.+++..-..|+ .|.+.+-++|.
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~ 585 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFE 585 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhh
Confidence 45777888899999999999988866 446788888888888888888888887776653 34445555543
No 287
>PRK11619 lytic murein transglycosylase; Provisional
Probab=90.64 E-value=27 Score=37.52 Aligned_cols=115 Identities=10% Similarity=0.103 Sum_probs=56.8
Q ss_pred cCCHHHHHHHHHHHHHC-CCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 007288 393 HGHGKEAIELFDEMVKS-GVRPDRI--VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469 (609)
Q Consensus 393 ~g~~~~A~~~~~~m~~~-g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 469 (609)
..+.+.|..++...... ++.+... ....+.......+..+++...++...... .+......-+..-.+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 34557777777766442 2322222 23333333333322445555555442211 2333334444444467777777
Q ss_pred HHHHHhCCCC-CCHhhHHHH-HHHHHhCCChHHHHHHHHHHh
Q 007288 470 YELIKSMPFK-PDESVWGPL-LGACKEHRLPNLGKLAALRVL 509 (609)
Q Consensus 470 ~~~~~~~~~~-p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~ 509 (609)
...+..|+.. .+...|.-. ..++...|+.++|...|+++.
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777776311 122223322 355556777777777777763
No 288
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.60 E-value=4.3 Score=35.28 Aligned_cols=93 Identities=16% Similarity=0.137 Sum_probs=53.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhhh---cCCCCC----hhH
Q 007288 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI--VFMAVLTACSHAGLVDEGLKYFKSMND---YNVNPN----KEI 452 (609)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~----~~~ 452 (609)
.+..+..-|.+.|+.+.|++.|.++.+....+... .+-.+|+.+...+++..+.....+... .+-.++ ..+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 44556666677777777777777766654444432 555666666777777777666666522 111111 122
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC
Q 007288 453 YGCVVDLLGRAGRVKEAYELIKSM 476 (609)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~~ 476 (609)
|..| .+...+++.+|.+.|-..
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHcc
Confidence 2222 223467888888777666
No 289
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.53 E-value=0.41 Score=28.06 Aligned_cols=30 Identities=13% Similarity=-0.023 Sum_probs=19.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHhccCC
Q 007288 484 VWGPLLGACKEHRLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 513 (609)
+|..+...+...|++++|...++++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 345555666667777777777777766666
No 290
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.50 E-value=28 Score=37.41 Aligned_cols=80 Identities=10% Similarity=0.063 Sum_probs=43.6
Q ss_pred CHHHHHHHHccCCC-------CChhhHHHHHHHHH--hcCChhhHHHHHHHHHHCCC---------CCCHhhHHHHHHHH
Q 007288 163 SMDNARLVFNDMKW-------KNDVSWTTLITGYA--HSGNGYGGLGVFKEMLLEGV---------EMNPYSFSIAVRAC 224 (609)
Q Consensus 163 ~~~~A~~~~~~~~~-------~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g~---------~p~~~t~~~ll~~~ 224 (609)
+...|.+.++.+.. +-...+-.++.+.. ..+..+++++.++.+..... .|-..+|..++..+
T Consensus 154 d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~ 233 (608)
T PF10345_consen 154 DYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLC 233 (608)
T ss_pred cHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHH
Confidence 66666666654432 12233333443333 34556777777776643221 33455677777765
Q ss_pred H--ccCCchhHHHHHHHHHH
Q 007288 225 A--STGWVSFGKLIHAAVIK 242 (609)
Q Consensus 225 ~--~~g~~~~a~~~~~~~~~ 242 (609)
+ ..|+++.+...++.+.+
T Consensus 234 ~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 234 CSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 4 56777777666655543
No 291
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.20 E-value=2.2 Score=35.85 Aligned_cols=82 Identities=16% Similarity=0.078 Sum_probs=47.4
Q ss_pred hHHHHHHHHH---hhcCCHHHHHHHHHhC-CCCCCHhhHHHHH-HHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHH
Q 007288 451 EIYGCVVDLL---GRAGRVKEAYELIKSM-PFKPDESVWGPLL-GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525 (609)
Q Consensus 451 ~~~~~l~~~~---~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 525 (609)
.+.+.|++.+ .+.++.+++..++..+ -..|.......+- ..+...|++.+|..+++.+.+-.|..+..--.++.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3344444433 3566777777777776 3445444333332 346677777777777777777666555444455555
Q ss_pred HHhcCCh
Q 007288 526 YAAEGKW 532 (609)
Q Consensus 526 ~~~~g~~ 532 (609)
+...|+.
T Consensus 88 L~~~~D~ 94 (160)
T PF09613_consen 88 LYALGDP 94 (160)
T ss_pred HHHcCCh
Confidence 5555554
No 292
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.03 E-value=21 Score=35.15 Aligned_cols=66 Identities=15% Similarity=0.157 Sum_probs=55.6
Q ss_pred CCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCC----CCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 480 PDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP----NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 480 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
....+|..+...+++.|+++.|...+.++....+ ..+.....-+..+...|+..+|+..++...+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3556788888999999999999999999988652 24567777899999999999999999988873
No 293
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.02 E-value=11 Score=32.03 Aligned_cols=52 Identities=6% Similarity=-0.099 Sum_probs=26.9
Q ss_pred HhCCChHHHHHHHHHHhc-cCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 493 KEHRLPNLGKLAALRVLD-LKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 493 ~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
...|.++......+.+-. .+|-....-..|+-+-.+.|++.+|...|..+..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 344555544443333322 2332233444566666667777777777766654
No 294
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.97 E-value=11 Score=32.09 Aligned_cols=132 Identities=10% Similarity=0.126 Sum_probs=67.9
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCchHHHHHHHHhHHCCCCCCH
Q 007288 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNC 314 (609)
Q Consensus 235 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~p~~ 314 (609)
++++.+.+.+++|+...+..+++.+.+.|++.....++. .++-+|.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq----------------------------------~~Vi~DS 60 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ----------------------------------YHVIPDS 60 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh----------------------------------hcccCCc
Confidence 445555666777887888888888887777665554443 2334444
Q ss_pred HhHHHHHHHHHhh--ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 007288 315 FTFTSIIAACATL--AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA 392 (609)
Q Consensus 315 ~t~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 392 (609)
......+-.+... .-...|.+.+.++.. .+..+++.+...|++-+|.++.+....-+......++.+-.+
T Consensus 61 k~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~--------~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~ 132 (167)
T PF07035_consen 61 KPLACQLLSLGNQYPPAYQLGLDMLKRLGT--------AYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAAN 132 (167)
T ss_pred HHHHHHHHHhHccChHHHHHHHHHHHHhhh--------hHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHH
Confidence 4333332222111 011222222222221 134556666777777777777766544433444445555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 007288 393 HGHGKEAIELFDEMVK 408 (609)
Q Consensus 393 ~g~~~~A~~~~~~m~~ 408 (609)
.+|...-..+++-..+
T Consensus 133 ~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 133 SNDDQLFYAVFRFFEE 148 (167)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555444444444433
No 295
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.71 E-value=0.51 Score=28.25 Aligned_cols=27 Identities=7% Similarity=-0.167 Sum_probs=19.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHhc
Q 007288 484 VWGPLLGACKEHRLPNLGKLAALRVLD 510 (609)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 510 (609)
+|..|...|.+.|++++|+.++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356777888888888888888888554
No 296
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.62 E-value=15 Score=33.13 Aligned_cols=55 Identities=9% Similarity=0.140 Sum_probs=25.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhhc---CCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 007288 418 FMAVLTACSHAGLVDEGLKYFKSMNDY---NVNPNKEIYGCVVDLLGRAGRVKEAYELI 473 (609)
Q Consensus 418 ~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 473 (609)
|...|-.+....++..|..+++.-... .-+-+..+...|+.+| ..|+.+++..++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 344444444555555565555553111 1112334444555544 345555555444
No 297
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=89.18 E-value=18 Score=33.15 Aligned_cols=61 Identities=13% Similarity=0.015 Sum_probs=42.3
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC--C--CCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC
Q 007288 455 CVVDLLGRAGRVKEAYELIKSM--P--FKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM 515 (609)
Q Consensus 455 ~l~~~~~~~g~~~~A~~~~~~~--~--~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 515 (609)
.+.+-|.+.|.+..|..-+++| . -.+ .....-.+..+|...|..++|.....-+....|++
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 3556788899999988888887 1 111 22334445588999999999988777666666654
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.84 E-value=13 Score=31.29 Aligned_cols=87 Identities=16% Similarity=0.032 Sum_probs=46.8
Q ss_pred HhccCCHHHHHHHHHHhhhcCCCCChhHH-HHHHHHHhhcCCHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhCCChHHHH
Q 007288 425 CSHAGLVDEGLKYFKSMNDYNVNPNKEIY-GCVVDLLGRAGRVKEAYELIKSMP-FKPDESVWGPLLGACKEHRLPNLGK 502 (609)
Q Consensus 425 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~ 502 (609)
-...++.+++..++..+.-. .|..... ..-...+.+.|++.+|+.+|+++. ..|....-..|+..|.....-..=.
T Consensus 20 al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 34566777777777777442 2332221 122344567788888888888873 3344444455555555443333333
Q ss_pred HHHHHHhccCC
Q 007288 503 LAALRVLDLKP 513 (609)
Q Consensus 503 ~~~~~~~~~~p 513 (609)
....++++..+
T Consensus 98 ~~A~evle~~~ 108 (160)
T PF09613_consen 98 RYADEVLESGA 108 (160)
T ss_pred HHHHHHHhcCC
Confidence 33444555444
No 299
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.79 E-value=1.9 Score=35.44 Aligned_cols=69 Identities=9% Similarity=-0.020 Sum_probs=30.8
Q ss_pred cCCHHHHHHHHHhC-CCCCCHhhHHHHH-HHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 007288 463 AGRVKEAYELIKSM-PFKPDESVWGPLL-GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK 531 (609)
Q Consensus 463 ~g~~~~A~~~~~~~-~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 531 (609)
.++++++..+++.+ -+.|+..-...+- ..+...|++.+|..+++.+.+-.+..+..--.++.++.-.|+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 45555555555555 2333322222211 234455555555555555555554333333333344444444
No 300
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.64 E-value=0.7 Score=26.97 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=25.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 517 GTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
..+..++.+|...|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999998764
No 301
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.60 E-value=0.71 Score=27.03 Aligned_cols=30 Identities=23% Similarity=0.353 Sum_probs=25.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 517 GTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
.+|..++.+|...|++++|+..+++..+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 468899999999999999999999998743
No 302
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.44 E-value=38 Score=36.15 Aligned_cols=95 Identities=19% Similarity=0.319 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 007288 397 KEAIELFDEMVKSGVRP-----DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471 (609)
Q Consensus 397 ~~A~~~~~~m~~~g~~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 471 (609)
+..++++.+.....+-| ........+..|.+.|-+++-.-++.+|-. .......+| -+.+++++|++
T Consensus 611 dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmGn-----~k~AL~lII---~el~die~AIe 682 (846)
T KOG2066|consen 611 DKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMGN-----AKEALKLII---NELRDIEKAIE 682 (846)
T ss_pred hHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhcc-----hHHHHHHHH---HHhhCHHHHHH
Confidence 34455555554433322 112345566677778888888888877731 233333444 45588888888
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhCCChHHHH
Q 007288 472 LIKSMPFKPDESVWGPLLGACKEHRLPNLGK 502 (609)
Q Consensus 472 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 502 (609)
+.++- -|...|..||.-+...-.+-.++
T Consensus 683 fvKeq---~D~eLWe~LI~~~ldkPe~~~~l 710 (846)
T KOG2066|consen 683 FVKEQ---DDSELWEDLINYSLDKPEFIKAL 710 (846)
T ss_pred HHHhc---CCHHHHHHHHHHhhcCcHHHHHH
Confidence 88774 48889999998877766555554
No 303
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.41 E-value=5.3 Score=37.30 Aligned_cols=75 Identities=13% Similarity=0.318 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhh-----hcCCCCChhHHHHHHH
Q 007288 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-----DYNVNPNKEIYGCVVD 458 (609)
Q Consensus 384 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~l~~ 458 (609)
..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+. +.|+.|...+...+..
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~ 235 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEE 235 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHH
Confidence 334444444455555555555554431 2244455555555555555555555544442 2455555554444433
Q ss_pred H
Q 007288 459 L 459 (609)
Q Consensus 459 ~ 459 (609)
.
T Consensus 236 ~ 236 (280)
T COG3629 236 I 236 (280)
T ss_pred H
Confidence 3
No 304
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.40 E-value=14 Score=32.79 Aligned_cols=179 Identities=15% Similarity=0.101 Sum_probs=102.1
Q ss_pred hcCCHHHHHHHHHhcC--CCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 007288 361 KCGNISDSQKIFSEMS--DRD-LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY 437 (609)
Q Consensus 361 ~~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 437 (609)
..|-+.-|.-=|.... .|+ +..||-+.-.+...|+++.|.+.|+...+....-+....|. .-++--.|++.-|.+-
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR-gi~~YY~gR~~LAq~d 155 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR-GIALYYGGRYKLAQDD 155 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc-ceeeeecCchHhhHHH
Confidence 3444444444444433 343 35788888888999999999999999888532222222222 2234457888888887
Q ss_pred HHHhhhcCC-CCChhHHHHHHHHHhhcCCHHHHHHHH-HhCCCCCCHhhHHHHH-HHHHhCCChHHHHHHHHHHhccCCC
Q 007288 438 FKSMNDYNV-NPNKEIYGCVVDLLGRAGRVKEAYELI-KSMPFKPDESVWGPLL-GACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 438 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
+...-..+. .|=...|--+. ...-++.+|..-+ ++.. ..|..-|..-+ ..|.-+=..+ .+++++.....+
T Consensus 156 ~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~a~~ 228 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKISEE---TLMERLKADATD 228 (297)
T ss_pred HHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhccHH---HHHHHHHhhccc
Confidence 777643332 22222222222 2344677776544 3332 23445555444 2222221222 223333332222
Q ss_pred C-------cchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 515 M-------MGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 515 ~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
+ ..+|.-|+.-|...|+.++|..+|+.....++
T Consensus 229 n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 229 NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 2 45888899999999999999999998876544
No 305
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.27 E-value=17 Score=31.74 Aligned_cols=23 Identities=9% Similarity=-0.057 Sum_probs=11.2
Q ss_pred HHHHhCCChHHHHHHHHHHhccC
Q 007288 490 GACKEHRLPNLGKLAALRVLDLK 512 (609)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~~~~~~ 512 (609)
+++...|+-++|+..|+++++..
T Consensus 167 Dill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 167 DILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hHHHHcCchHHHHHHHHHHHHcc
Confidence 34444555555555555544443
No 306
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.94 E-value=5.9 Score=34.44 Aligned_cols=95 Identities=11% Similarity=-0.044 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH--hhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCC-hh------
Q 007288 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP--YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSN-LP------ 250 (609)
Q Consensus 180 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~------ 250 (609)
..+..+...|++.|+.+.|++.|.++.+....+.. ..+..+++.....+++..+.....++...--... ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 35777788888888888888888888776444332 3456677777777888877777766655321211 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC
Q 007288 251 VMNSILDMYCRFDCLSDANQYFDEMT 276 (609)
Q Consensus 251 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 276 (609)
+|..+ .+...+++..|-..|-...
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHccC
Confidence 22222 1233566777666665553
No 307
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.80 E-value=42 Score=35.87 Aligned_cols=146 Identities=11% Similarity=-0.025 Sum_probs=84.0
Q ss_pred HHHHHccCChhHHHHhhccCCC--C---CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCC
Q 007288 53 IKSYFDEGLIEEARTLFDEMPE--R---DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKS 127 (609)
Q Consensus 53 i~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 127 (609)
|+-+.+.+.+++|+++.+.... + -...+-..|..+.-.|++++|-...-.|..+ +..-|..-+..+...+.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 4566778999999998887663 1 2245788888888889999888887777643 34444444444444444
Q ss_pred hHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCC--------------------CChhhHHHHHH
Q 007288 128 LSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW--------------------KNDVSWTTLIT 187 (609)
Q Consensus 128 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~--------------------~~~~~~~~li~ 187 (609)
......+ +.......+..+|..++..+.. . +...-.++....+. .+...-..|+.
T Consensus 439 l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~-~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~ 513 (846)
T KOG2066|consen 439 LTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-S-DVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAH 513 (846)
T ss_pred cchhhcc---CCCCCcccCchHHHHHHHHHHH-H-HHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHH
Confidence 3322111 1111111234455555555544 2 33333333332221 12223444778
Q ss_pred HHHhcCChhhHHHHHHHHHH
Q 007288 188 GYAHSGNGYGGLGVFKEMLL 207 (609)
Q Consensus 188 ~~~~~g~~~~a~~~~~~m~~ 207 (609)
-|...+++..|+.++-..++
T Consensus 514 LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 514 LYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHccChHHHHHHHHhccC
Confidence 88888888888888776653
No 308
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.91 E-value=1 Score=24.60 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=18.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHH
Q 007288 517 GTYIILSNIYAAEGKWEEFAKFRK 540 (609)
Q Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~ 540 (609)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356678888888888888888775
No 309
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=86.48 E-value=5.5 Score=26.37 Aligned_cols=27 Identities=11% Similarity=0.128 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 519 YIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
...++-++.+.|++++|.+..+.+.+.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 456788899999999999999999873
No 310
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.03 E-value=0.8 Score=38.28 Aligned_cols=85 Identities=16% Similarity=0.216 Sum_probs=52.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCC
Q 007288 386 MMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465 (609)
Q Consensus 386 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 465 (609)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcch
Confidence 3455556667777777777777665555667777777788877766666666652211 112345566666677
Q ss_pred HHHHHHHHHhCC
Q 007288 466 VKEAYELIKSMP 477 (609)
Q Consensus 466 ~~~A~~~~~~~~ 477 (609)
+++|.-++.+++
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 777777776664
No 311
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=85.98 E-value=46 Score=34.45 Aligned_cols=44 Identities=14% Similarity=0.095 Sum_probs=20.6
Q ss_pred HhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHH
Q 007288 493 KEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFA 536 (609)
Q Consensus 493 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 536 (609)
-..|++..|..+++.+.+-.|+....-..-+....+.|..+.+.
T Consensus 377 e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 34445555555555554433443333333444444445544444
No 312
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.95 E-value=1.5 Score=26.93 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=23.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 517 GTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
.++..|+..|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678899999999999999999998875
No 313
>PRK10941 hypothetical protein; Provisional
Probab=85.65 E-value=3.7 Score=38.30 Aligned_cols=62 Identities=16% Similarity=-0.047 Sum_probs=55.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 486 GPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 486 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
+.|-.+|.+.++++.|+.+.+.++.+.|+++.-+.-.+-+|.+.|.+..|..-++...+..+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 34457799999999999999999999999998899999999999999999999999887654
No 314
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.13 E-value=8.1 Score=36.16 Aligned_cols=101 Identities=14% Similarity=0.148 Sum_probs=65.5
Q ss_pred CCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCC-C-----hhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHh
Q 007288 142 GLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK-N-----DVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPY 215 (609)
Q Consensus 142 ~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~-~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 215 (609)
|......+...++..-.... +++.+...+-.+... + ..+-.++++.+. .-+.++++.++..=+.-|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~-~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSRE-EIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhcccccc-chhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 44445555555666555555 677777666555431 1 111222333332 335668888888778888888888
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHHHHhC
Q 007288 216 SFSIAVRACASTGWVSFGKLIHAAVIKHG 244 (609)
Q Consensus 216 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g 244 (609)
+++.+|..+.+.+++..|.++.-.|+...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888888877777654
No 315
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.06 E-value=1.8 Score=36.18 Aligned_cols=77 Identities=13% Similarity=0.265 Sum_probs=36.3
Q ss_pred HHHHHHHccCChhHHHHhhccCCC----CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCC
Q 007288 51 NLIKSYFDEGLIEEARTLFDEMPE----RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMK 126 (609)
Q Consensus 51 ~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 126 (609)
.+|+.+.+.+.++.+..+++.+.. .+....+.++..|++.+..+...++++. .+......++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcc
Confidence 455555555555555555554441 2344455555666655555555555541 11122334444455555
Q ss_pred ChHHHHHH
Q 007288 127 SLSNAALV 134 (609)
Q Consensus 127 ~~~~a~~~ 134 (609)
.++++.-+
T Consensus 85 l~~~a~~L 92 (143)
T PF00637_consen 85 LYEEAVYL 92 (143)
T ss_dssp SHHHHHHH
T ss_pred hHHHHHHH
Confidence 55444433
No 316
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=84.91 E-value=36 Score=32.25 Aligned_cols=97 Identities=8% Similarity=0.031 Sum_probs=43.5
Q ss_pred HHHHHHHHHccCCch---hHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHH
Q 007288 217 FSIAVRACASTGWVS---FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK---DLITWNTIIAGY 290 (609)
Q Consensus 217 ~~~ll~~~~~~g~~~---~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~ 290 (609)
+..++.++...+..+ +|..+++.+... .+..+.++-.-+..+.+.++.+++.+.+.+|... ....+...+..+
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i 165 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHI 165 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 344445555544433 333344444322 2223444444455555566666666666665432 223333333333
Q ss_pred ---HhCCchHHHHHHHHhHHCCCCCCH
Q 007288 291 ---EKSGSSECLNMFSKMKSERFSPNC 314 (609)
Q Consensus 291 ---~~~~~~~a~~~~~~m~~~~~~p~~ 314 (609)
.......+...+..+....+.|..
T Consensus 166 ~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 166 KQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 333344555555555544444433
No 317
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.87 E-value=1.1 Score=25.79 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 518 TYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
++..++.+|.+.|++++|.+.|+++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3456777777778888888888777664
No 318
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=84.85 E-value=2.7 Score=39.58 Aligned_cols=79 Identities=14% Similarity=0.107 Sum_probs=56.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCC
Q 007288 387 MIGYGAHGHGKEAIELFDEMVKSGVRP-DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465 (609)
Q Consensus 387 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 465 (609)
..-|.++|.+++|+..|..... +.| |.+++..-..+|.+...+..|..-.......+ ...+.+|.|.+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~Y~KAYSRR~~ 173 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KLYVKAYSRRMQ 173 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HHHHHHHHHHHH
Confidence 4568999999999999998876 466 88899988999999999887776666554322 234566666555
Q ss_pred HHHHHHHHHh
Q 007288 466 VKEAYELIKS 475 (609)
Q Consensus 466 ~~~A~~~~~~ 475 (609)
-.+++....+
T Consensus 174 AR~~Lg~~~E 183 (536)
T KOG4648|consen 174 ARESLGNNME 183 (536)
T ss_pred HHHHHhhHHH
Confidence 4444444433
No 319
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.83 E-value=22 Score=32.13 Aligned_cols=58 Identities=10% Similarity=-0.090 Sum_probs=50.4
Q ss_pred HHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 490 GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
.++...|++-++++....++...|.|..+|..-+.+.+..=+.++|.+-|.+..+..+
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 5566788999999999999999999999999999999888888999998988877544
No 320
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.44 E-value=17 Score=34.18 Aligned_cols=102 Identities=14% Similarity=0.179 Sum_probs=76.3
Q ss_pred hCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-Ch-----hHHHHHHHHHHhCCchHHHHHHHHhHHCCCCCCHHh
Q 007288 243 HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DL-----ITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFT 316 (609)
Q Consensus 243 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~p~~~t 316 (609)
.|.+....+...++..-....+++.+...+-+++.. +. .+-.+.+.-+.+-..++++.++..=++-|+-||.++
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHccChHHHHHHHhCcchhccccchhh
Confidence 455666666677777777778888888887777642 11 223344555666667788888888888899999999
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhC
Q 007288 317 FTSIIAACATLAALSCGQQVHAGIVRRG 344 (609)
Q Consensus 317 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 344 (609)
+..+|..+.+.++...|.++.-.|....
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999988887776543
No 321
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=84.14 E-value=1.9 Score=25.41 Aligned_cols=31 Identities=16% Similarity=0.206 Sum_probs=22.0
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCCHHHHH
Q 007288 238 AAVIKHGFGSNLPVMNSILDMYCRFDCLSDAN 269 (609)
Q Consensus 238 ~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 269 (609)
++.++.. |-+..+|+.+...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444443 557778888888888888888775
No 322
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.00 E-value=2.5 Score=24.55 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=25.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 517 GTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
.+|..++..|...|++++|...|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999999876
No 323
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.64 E-value=10 Score=31.35 Aligned_cols=109 Identities=8% Similarity=0.107 Sum_probs=64.8
Q ss_pred HHHHHHHHHH---HhccCCHHHHHHHHHHhhhcCC-CCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhH-HHHH
Q 007288 415 RIVFMAVLTA---CSHAGLVDEGLKYFKSMNDYNV-NPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVW-GPLL 489 (609)
Q Consensus 415 ~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~-~~l~ 489 (609)
....+.|+.. -...++.+++..+++.|.-... .+...++. ...+...|++++|+++|++....+....| ..|+
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~ 84 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAPPYGKALL 84 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHH
Confidence 3444455443 3457899999999999954221 22334443 34567899999999999999543333233 3344
Q ss_pred HHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 007288 490 GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMR 543 (609)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 543 (609)
..|.... -+ ..|...+......|...++..+.+.+.
T Consensus 85 A~CL~al--------------~D----p~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 85 ALCLNAK--------------GD----AEWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHHhc--------------CC----hHHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 3343321 11 235555555556666677777777766
No 324
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.60 E-value=59 Score=34.45 Aligned_cols=114 Identities=12% Similarity=0.116 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHH--HHH-HHhcCCHHHHHHHHHhcCC--------CCcchHHHHHHHHHhcC----
Q 007288 330 LSCGQQVHAGIVRRGLDGNLALANAL--IDM-YAKCGNISDSQKIFSEMSD--------RDLVTWTSMMIGYGAHG---- 394 (609)
Q Consensus 330 ~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~-~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g---- 394 (609)
...+.++++...+.|... ......+ ..+ +....+.+.|..+|+.+.+ -.....+.+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~-a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~ 306 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSE-AQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEK 306 (552)
T ss_pred hhHHHHHHHHHHhhcchH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcc
Confidence 456666666666655211 1111111 111 2344566666666655532 12233444444444422
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHhhhcC
Q 007288 395 -HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH-AGLVDEGLKYFKSMNDYN 445 (609)
Q Consensus 395 -~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~ 445 (609)
+.+.|+.++....+.| .|+...+...+.-... ..+...|.++|....+.|
T Consensus 307 ~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 307 IDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred ccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC
Confidence 3444555555555544 2333322222221111 123445555555554444
No 325
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.35 E-value=34 Score=30.82 Aligned_cols=90 Identities=7% Similarity=-0.061 Sum_probs=42.3
Q ss_pred HHHHHhhc-CCHHHHHHHHHhC-----CCCCCHhhHHHHH---HHHHhCCChHHHHHHHHHHhccCCCCcc------hHH
Q 007288 456 VVDLLGRA-GRVKEAYELIKSM-----PFKPDESVWGPLL---GACKEHRLPNLGKLAALRVLDLKPNMMG------TYI 520 (609)
Q Consensus 456 l~~~~~~~-g~~~~A~~~~~~~-----~~~p~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~ 520 (609)
+...|-.. .+++.|+..|+.. +.+.+...-..++ .-....+++.+|..+|+++....-++.. .|.
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 33444333 4555666666555 2222222223333 3345667777788887777654332221 122
Q ss_pred HHHHHHHh-cCChHHHHHHHHHHHhC
Q 007288 521 ILSNIYAA-EGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 521 ~l~~~~~~-~g~~~~A~~~~~~m~~~ 545 (609)
.-+.+|.- .++.-.+...+++-.+.
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 22222222 25555555556555553
No 326
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=82.50 E-value=75 Score=34.15 Aligned_cols=215 Identities=13% Similarity=0.106 Sum_probs=90.7
Q ss_pred CChhHHhHHHHHHHccCChhHHHHhhccCC---CCCcccHHHHHHHHHcCCC-------hhHHHHHHHHHHHCCCCCCcc
Q 007288 44 GPSILATNLIKSYFDEGLIEEARTLFDEMP---ERDVVSWTVMIAGYTSFNC-------HNQAWTVFVEMVRNEVNPNAF 113 (609)
Q Consensus 44 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~-------~~~a~~~~~~m~~~g~~p~~~ 113 (609)
.+..+| ++|=-+.|+|++++|.++..+.. +.....+-..+..|....+ -++...-|++..+.....|+.
T Consensus 110 ~~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 110 NGDPIW-ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp TTEEHH-HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred CCCccH-HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 344455 46667889999999999994333 2344567777888866532 235556677766654433543
Q ss_pred h---HHHHHHHhhCCC-C-------hHHHHHHHHHH-HHhCCC-----CCcchhhHHHHHHHhcCCCHHHHHHHHccCCC
Q 007288 114 T---LSSVLKACKGMK-S-------LSNAALVHGMA-IKEGLE-----GSIYVENSLMDVYATCCISMDNARLVFNDMKW 176 (609)
Q Consensus 114 t---~~~ll~~~~~~~-~-------~~~a~~~~~~~-~~~~~~-----~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~ 176 (609)
- |..+ ..|--.. . .+.-. +++.. .+.... .+..++..|=+...+.| ...|.. .
T Consensus 189 K~AvY~il-g~cD~~~~~~~~V~~tiED~L-W~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~G------e~~F~~--~ 258 (613)
T PF04097_consen 189 KRAVYKIL-GRCDLSRRHLPEVARTIEDWL-WLQLSLVREDERSSSSAYERYTLEDLQKLILKYG------ESHFNA--G 258 (613)
T ss_dssp HHHHHHHH-HT--CCC-S-TTC--SHHHHH-HHHHHH---TTSSSSSSS----HHHHHHHHHHH-------GGGCTT---
T ss_pred HHHHHHHH-hcCCccccchHHHhCcHHHHH-HHHHHhhccCCCccccccccccHHHHHHHHHHhc------hhhccc--c
Confidence 2 3333 2221111 1 11111 11111 111111 11233333333333222 112222 1
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhC-CCCChhHHHHH
Q 007288 177 KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG-FGSNLPVMNSI 255 (609)
Q Consensus 177 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~l 255 (609)
.+.. .....+.-.|.++.|++.+-. ..+...|...+.+.+..+.-.+-.+... ..+.... -.|...-+..|
T Consensus 259 ~~p~---~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arL 330 (613)
T PF04097_consen 259 SNPL---LYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARL 330 (613)
T ss_dssp --------HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHH
T ss_pred hhHH---HHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHH
Confidence 1222 234555668999999998876 2334556666666665543322211111 2222111 01111446667
Q ss_pred HHHHHhc---CCHHHHHHHHHhcCC
Q 007288 256 LDMYCRF---DCLSDANQYFDEMTE 277 (609)
Q Consensus 256 ~~~~~~~---g~~~~A~~~~~~~~~ 277 (609)
|..|++. .+..+|...|-.+..
T Consensus 331 I~~Y~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 331 IGQYTRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp HHHHHHTTTTT-HHHHHHHHHGGGG
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHH
Confidence 7777653 566777777666543
No 327
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.40 E-value=60 Score=32.97 Aligned_cols=171 Identities=9% Similarity=0.108 Sum_probs=94.2
Q ss_pred hhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007288 280 LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDM 358 (609)
Q Consensus 280 ~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 358 (609)
....-+++..+..+. +.-+..+-.+|..-| -+-..|..++..|... ..+.-..+|+++.+..+. |+..-.-|+..
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~ 141 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADK 141 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHH
Confidence 344556666676666 666667777777643 4566677777777666 556666777777665432 33333445554
Q ss_pred HHhcCCHHHHHHHHHhcCCC------Cc---chHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhcc
Q 007288 359 YAKCGNISDSQKIFSEMSDR------DL---VTWTSMMIGYGAHGHGKEAIELFDEMVK-SGVRPDRIVFMAVLTACSHA 428 (609)
Q Consensus 359 ~~~~g~~~~A~~~~~~~~~~------~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~ 428 (609)
|-+ ++.+.+...|..+... +. ..|..+...- ..+.+..+.+..+... .|..--...+.-+-..|...
T Consensus 142 yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~ 218 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN 218 (711)
T ss_pred HHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence 444 6666776666665421 11 1344443311 2455555555555544 23333444555555666666
Q ss_pred CCHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 007288 429 GLVDEGLKYFKSMNDYNVNPNKEIYGCVVD 458 (609)
Q Consensus 429 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 458 (609)
.++++|++++....+.+- -|...-..++.
T Consensus 219 eN~~eai~Ilk~il~~d~-k~~~ar~~~i~ 247 (711)
T COG1747 219 ENWTEAIRILKHILEHDE-KDVWARKEIIE 247 (711)
T ss_pred cCHHHHHHHHHHHhhhcc-hhhhHHHHHHH
Confidence 677777777766655442 23333334443
No 328
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.09 E-value=16 Score=31.96 Aligned_cols=99 Identities=10% Similarity=0.031 Sum_probs=57.6
Q ss_pred HhccCCHHHHHHHHHHhhhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-hhHHHHHHHHHhCCCh
Q 007288 425 CSHAGLVDEGLKYFKSMNDYNVNPN----KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDE-SVWGPLLGACKEHRLP 498 (609)
Q Consensus 425 ~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~ 498 (609)
+.+.|++++|..-|......-.... ...|..-..++.+.+.++.|++-..+. .+.|.. .....-..+|.+...+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 4456666666666666644322111 223334445666777777777766555 444421 1111222457777888
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHH
Q 007288 499 NLGKLAALRVLDLKPNMMGTYIILS 523 (609)
Q Consensus 499 ~~a~~~~~~~~~~~p~~~~~~~~l~ 523 (609)
+.|++-|+++++.+|....+-..+.
T Consensus 185 eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 185 EEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHH
Confidence 9999999999999996544433333
No 329
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=81.37 E-value=2.2 Score=24.44 Aligned_cols=28 Identities=11% Similarity=-0.066 Sum_probs=22.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHhccCCC
Q 007288 487 PLLGACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 487 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
.+..++.+.|++++|...++++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4556677788888888888888888875
No 330
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.20 E-value=37 Score=29.71 Aligned_cols=88 Identities=9% Similarity=-0.056 Sum_probs=45.7
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHH-----HHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCh
Q 007288 458 DLLGRAGRVKEAYELIKSMPFKPDESVWGPLL-----GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKW 532 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~-----~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 532 (609)
..+..+|++++|...++..--.|....+..++ +.....|.+++|+..+....+-.= .+.....-++++...|+-
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg~k 175 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcCch
Confidence 44455555555555555442223333333332 334555566665555544333211 123344566777777777
Q ss_pred HHHHHHHHHHHhCC
Q 007288 533 EEFAKFRKIMRGMG 546 (609)
Q Consensus 533 ~~A~~~~~~m~~~~ 546 (609)
++|+.-|.+..+.+
T Consensus 176 ~~Ar~ay~kAl~~~ 189 (207)
T COG2976 176 QEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHcc
Confidence 77777777776654
No 331
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=81.11 E-value=2.1 Score=36.61 Aligned_cols=45 Identities=16% Similarity=0.082 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC----hHHHHHHHHHH
Q 007288 498 PNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK----WEEFAKFRKIM 542 (609)
Q Consensus 498 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~A~~~~~~m 542 (609)
+++|..-+++++.++|+...++..++++|...+. ..+|..+|++.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 4567777888888999999999999999987654 33444444444
No 332
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.79 E-value=15 Score=28.05 Aligned_cols=60 Identities=17% Similarity=0.317 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh-hhcCCCCChhHHHHHHHH
Q 007288 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDL 459 (609)
Q Consensus 398 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~ 459 (609)
+..+-++.+....+.|+.......+++|.+.+++..|.++|+.. .+.| +....|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 44555566666778899999999999999999999999999888 4444 233377766643
No 333
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=80.74 E-value=26 Score=28.47 Aligned_cols=25 Identities=12% Similarity=-0.036 Sum_probs=13.6
Q ss_pred HHHHhCCChHHHHHHHHHHhccCCC
Q 007288 490 GACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
-++.+.++++.++.....+++.+|+
T Consensus 79 vg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 79 VGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 4455555555555555555555553
No 334
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=80.47 E-value=3.8 Score=36.08 Aligned_cols=89 Identities=21% Similarity=0.212 Sum_probs=49.3
Q ss_pred HhccCCHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhHHHHH--HHHHhCCChHH
Q 007288 425 CSHAGLVDEGLKYFKSMNDYNVNPN-KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDESVWGPLL--GACKEHRLPNL 500 (609)
Q Consensus 425 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~--~~~~~~~~~~~ 500 (609)
|-..|-+.-|..-|..... +.|+ +.+||.|.--+...|+++.|.+.|+.. ...|.. -|..+- -++.-.|+++.
T Consensus 75 YDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-hHHHhccceeeeecCchHh
Confidence 4445555555555554433 3444 456676766677777777777777765 333321 122221 22344567777
Q ss_pred HHHHHHHHhccCCCCc
Q 007288 501 GKLAALRVLDLKPNMM 516 (609)
Q Consensus 501 a~~~~~~~~~~~p~~~ 516 (609)
|.+-+.+.-..+|+||
T Consensus 152 Aq~d~~~fYQ~D~~DP 167 (297)
T COG4785 152 AQDDLLAFYQDDPNDP 167 (297)
T ss_pred hHHHHHHHHhcCCCCh
Confidence 7776666666666543
No 335
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.25 E-value=27 Score=34.84 Aligned_cols=87 Identities=22% Similarity=0.245 Sum_probs=38.0
Q ss_pred hccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHhhHHHHHHHHHhCCChHHHHH
Q 007288 426 SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-P-FKPDESVWGPLLGACKEHRLPNLGKL 503 (609)
Q Consensus 426 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~ 503 (609)
...|+++.+.+.+....+. +.....+..+++....+.|++++|...-..| + ...+..............|-++++..
T Consensus 334 ~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~ 412 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYH 412 (831)
T ss_pred HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHH
Confidence 4455555555555444221 1123344445555555555555555555444 1 01122222222223344444555555
Q ss_pred HHHHHhccCC
Q 007288 504 AALRVLDLKP 513 (609)
Q Consensus 504 ~~~~~~~~~p 513 (609)
.+++++.++|
T Consensus 413 ~wk~~~~~~~ 422 (831)
T PRK15180 413 YWKRVLLLNP 422 (831)
T ss_pred HHHHHhccCC
Confidence 5555555554
No 336
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.73 E-value=3.4 Score=26.10 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=23.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 520 IILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 520 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
..|+.+|...|+.+.|.++++++...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 358899999999999999999998643
No 337
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=79.65 E-value=17 Score=27.49 Aligned_cols=62 Identities=19% Similarity=0.346 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhh-hcCCCCChhHHHHHHH
Q 007288 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVD 458 (609)
Q Consensus 395 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~ 458 (609)
+.-++.+-++.+....+.|+.......+++|.+.+++..|.++|+..+ +.|. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 344555666666667788888889999999999999999999998774 4332 4456665554
No 338
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=79.22 E-value=69 Score=31.65 Aligned_cols=64 Identities=11% Similarity=0.096 Sum_probs=49.8
Q ss_pred CHhhHHHHH---HHHHhCCChHHHHHHHHHHhccCCC-CcchHHHHHHHHH-hcCChHHHHHHHHHHHh
Q 007288 481 DESVWGPLL---GACKEHRLPNLGKLAALRVLDLKPN-MMGTYIILSNIYA-AEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 481 ~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 544 (609)
|...|.++. ..+.+.|-+..|.+..+-++.++|. |+......++-|+ ++++++--+.+.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 344444443 6688999999999999999999997 8887777888777 66788888888777654
No 339
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=78.98 E-value=7.3 Score=34.98 Aligned_cols=53 Identities=15% Similarity=0.089 Sum_probs=29.4
Q ss_pred HHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 007288 490 GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIM 542 (609)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 542 (609)
-++.+.++++.+.+-..+++++.|+.......++........+++|+..+.+.
T Consensus 52 lchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 52 LCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555555555555
No 340
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.88 E-value=27 Score=26.69 Aligned_cols=62 Identities=18% Similarity=0.310 Sum_probs=45.6
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007288 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420 (609)
Q Consensus 356 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 420 (609)
+..+...|++++|..+.+.+..||...|-+|-. .+.|..+++..-+.+|..+| .|....|..
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 344667899999999998888888888876644 46677777877788887776 555555543
No 341
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=78.41 E-value=4 Score=22.55 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 007288 519 YIILSNIYAAEGKWEEFAKFRKIMR 543 (609)
Q Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~m~ 543 (609)
+..++..+...|++++|...+++..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4444445555555555555544443
No 342
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.31 E-value=23 Score=36.56 Aligned_cols=99 Identities=18% Similarity=0.105 Sum_probs=46.0
Q ss_pred hcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 007288 361 KCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS 440 (609)
Q Consensus 361 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 440 (609)
+.|+++.|.++..+.. +..-|..|..+..+.+++..|.+.|.+... |..|+-.+...|+.+....+-..
T Consensus 649 ~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence 3455555554443322 344555555555566666666555555433 22344444444544433333333
Q ss_pred hhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007288 441 MNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476 (609)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 476 (609)
..+.|.. |... -+|...|+++++++++.+-
T Consensus 718 ~~~~g~~-N~AF-----~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 718 AKKQGKN-NLAF-----LAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHhhccc-chHH-----HHHHHcCCHHHHHHHHHhc
Confidence 3333321 2211 2334456666666665554
No 343
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=78.21 E-value=10 Score=33.51 Aligned_cols=63 Identities=14% Similarity=-0.021 Sum_probs=49.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC
Q 007288 453 YGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM 515 (609)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 515 (609)
.+..+..+.+.+++.+|+...++- ..+| |..+-..++..++-.|++++|..-++.+-.+.|++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 445567788889999998877654 5566 45566677799999999999999999988888854
No 344
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=77.96 E-value=8.3 Score=35.71 Aligned_cols=58 Identities=21% Similarity=0.015 Sum_probs=52.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 487 PLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 487 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
.....|...|.+.+|.++.++++.++|-+...+..|...|+..|+--.|..-++++.+
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3347799999999999999999999999999999999999999999888888888754
No 345
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=77.90 E-value=5.4 Score=24.34 Aligned_cols=28 Identities=29% Similarity=0.500 Sum_probs=17.4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007288 381 VTWTSMMIGYGAHGHGKEAIELFDEMVK 408 (609)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 408 (609)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666666777777777776666554
No 346
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=77.78 E-value=32 Score=30.26 Aligned_cols=79 Identities=15% Similarity=0.097 Sum_probs=52.9
Q ss_pred HHhCCchHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHh---CCCCchhHHHHHHHHHHhcCCHH
Q 007288 290 YEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR---GLDGNLALANALIDMYAKCGNIS 366 (609)
Q Consensus 290 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~ 366 (609)
..+.|.++|.+.|-++...+.--++... ..+..+-...+.+++.+++-...+. +-.+|+.++.+|+..|.+.|+++
T Consensus 117 Wsr~~d~~A~~~fL~~E~~~~l~t~elq-~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGDQEALRRFLQLEGTPELETAELQ-YALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCcHHHHHHHHHHcCCCCCCCHHHH-HHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 3445577788888777776654444433 3344444467788888888776653 33677888888888888888887
Q ss_pred HHH
Q 007288 367 DSQ 369 (609)
Q Consensus 367 ~A~ 369 (609)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 774
No 347
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=77.67 E-value=21 Score=27.04 Aligned_cols=59 Identities=8% Similarity=0.157 Sum_probs=39.2
Q ss_pred HHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 007288 297 ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALI 356 (609)
Q Consensus 297 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 356 (609)
++.+-++.+....+.|++....+.+.+|.+.+++..|.++++-++.+. ..+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 344455555666778888888888888888888888888888766332 11333454444
No 348
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=77.52 E-value=66 Score=30.46 Aligned_cols=20 Identities=5% Similarity=-0.323 Sum_probs=13.1
Q ss_pred HHHHhCCChHHHHHHHHHHh
Q 007288 490 GACKEHRLPNLGKLAALRVL 509 (609)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~~~ 509 (609)
..+.+.++++.|...|+-.+
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 33566777777777776543
No 349
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.45 E-value=1e+02 Score=32.66 Aligned_cols=212 Identities=8% Similarity=0.049 Sum_probs=108.4
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-cCCHHHHHHHHHhcCCC-CcchHHHHHHHHH----hcCCHHHHHHH
Q 007288 329 ALSCGQQVHAGIVRRGLDGNLALANALIDMYAK-CGNISDSQKIFSEMSDR-DLVTWTSMMIGYG----AHGHGKEAIEL 402 (609)
Q Consensus 329 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~----~~g~~~~A~~~ 402 (609)
+.+.|..++....+.|. |+....-..+..... ..+...|.++|....+. .+..+-.+..+|. ...+...|..+
T Consensus 308 d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~ 386 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAY 386 (552)
T ss_pred cHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHH
Confidence 45556666666666553 232222222211111 23456777777766542 2333333333332 23577888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHH---hh----cCCHHHHHHHHHh
Q 007288 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLL---GR----AGRVKEAYELIKS 475 (609)
Q Consensus 403 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~A~~~~~~ 475 (609)
+++..+.| .|...--...+..+.. ++++.+.-.+..+...|.......-..++... .. ..+.+.+...+.+
T Consensus 387 ~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (552)
T KOG1550|consen 387 YKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSR 464 (552)
T ss_pred HHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHH
Confidence 88888877 3433222223333333 66666666666665555432211111111111 11 2245566666666
Q ss_pred CCCCCCHhhHHHHHHHHHhC----CChHHHHHHHHHHhccCCCCcchHHHHHHHHHhc---CChHHHHHHHHHHHhCC
Q 007288 476 MPFKPDESVWGPLLGACKEH----RLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE---GKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 476 ~~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~~ 546 (609)
....-+......|...|... .+++.|...+.++.... ......++.++... ..+..|.+++++..+.+
T Consensus 465 a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 465 AAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred HHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 64344445555555444332 35677777777766555 45566666666543 12577888887776643
No 350
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=76.75 E-value=6.4 Score=39.18 Aligned_cols=87 Identities=13% Similarity=0.091 Sum_probs=61.5
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCCHhhHHHHH-HHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHH
Q 007288 458 DLLGRAGRVKEAYELIKSM-PFKPDESVWGPLL-GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEF 535 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 535 (609)
+.+.+.+.++.|..++.++ ...|+-..|-+.= .++.+.+++..|+.-+.++++++|.....|..-+.++...+.+.+|
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence 3445566777777777666 5566555444433 6677778888888888888888887777777777888888888888
Q ss_pred HHHHHHHHh
Q 007288 536 AKFRKIMRG 544 (609)
Q Consensus 536 ~~~~~~m~~ 544 (609)
...|+....
T Consensus 92 ~~~l~~~~~ 100 (476)
T KOG0376|consen 92 LLDLEKVKK 100 (476)
T ss_pred HHHHHHhhh
Confidence 777776654
No 351
>PRK11619 lytic murein transglycosylase; Provisional
Probab=76.25 E-value=1.2e+02 Score=32.81 Aligned_cols=377 Identities=10% Similarity=-0.006 Sum_probs=168.4
Q ss_pred HHHHHHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchh
Q 007288 153 LMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSF 232 (609)
Q Consensus 153 ll~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 232 (609)
.+..+.+.+ +...... |..-+..+...-.....+....|+.++|......+-..|-. .+.....++..+.+.|.+..
T Consensus 105 ~l~~La~~~-~w~~~~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~ 181 (644)
T PRK11619 105 FVNELARRE-DWRGLLA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDP 181 (644)
T ss_pred HHHHHHHcc-CHHHHHH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCH
Confidence 333444444 6666665 33222235555566666677777766666666555444322 34455555555554443332
Q ss_pred HHHHHHHH---HHhC-----------CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHH---HHHHHHHhCC
Q 007288 233 GKLIHAAV---IKHG-----------FGSN-LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN---TIIAGYEKSG 294 (609)
Q Consensus 233 a~~~~~~~---~~~g-----------~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~li~~~~~~~ 294 (609)
.. ++..| ...| ++++ ......++..+. +...+..++.... ++...-. ..+.-+.+.+
T Consensus 182 ~d-~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~---~p~~~~~~~~~~~-~~~~~~~~~~~~l~Rlar~d 256 (644)
T PRK11619 182 LA-YLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQN---DPNTVETFARTTG-PTDFTRQMAAVAFASVARQD 256 (644)
T ss_pred HH-HHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHH---CHHHHHHHhhccC-CChhhHHHHHHHHHHHHHhC
Confidence 21 11111 1111 1111 111122222221 2222222222221 1111111 1222233333
Q ss_pred chHHHHHHHHhHHCC-CCCCHH--hHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 007288 295 SSECLNMFSKMKSER-FSPNCF--TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKI 371 (609)
Q Consensus 295 ~~~a~~~~~~m~~~~-~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 371 (609)
.+.|..++....... ..+... ....+.......+....+...+....... .+......-+....+.++++.+...
T Consensus 257 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 257 AENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHH
Confidence 666777776654332 222221 12222222222212444444444433221 2334444445555577788777777
Q ss_pred HHhcCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh--hhcCC
Q 007288 372 FSEMSDR---DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM--NDYNV 446 (609)
Q Consensus 372 ~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~~~~ 446 (609)
+..|... ...-..=+..++...|+.++|...|+.+... . +|-.++.+ .+.|..-. ... ... ....+
T Consensus 335 i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~---~fYG~LAa-~~Lg~~~~-~~~-~~~~~~~~~~ 405 (644)
T PRK11619 335 LARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---R---GFYPMVAA-QRLGEEYP-LKI-DKAPKPDSAL 405 (644)
T ss_pred HHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---CcHHHHHH-HHcCCCCC-CCC-CCCCchhhhh
Confidence 7777531 1122222455555578888888887776431 1 23222221 11121100 000 000 00000
Q ss_pred CCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccC---CCCcchHHHHH
Q 007288 447 NPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLK---PNMMGTYIILS 523 (609)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~~~~l~ 523 (609)
. .... -.-+..+...|....|...+..+....+......+.....+.|.++.+..........+ -.-+..|...+
T Consensus 406 ~-~~~~-~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~ 483 (644)
T PRK11619 406 T-QGPE-MARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEF 483 (644)
T ss_pred c-cChH-HHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHH
Confidence 0 0011 12334566778888888887766333455556666677778888888877665432211 01233466666
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCccc
Q 007288 524 NIYAAEGKWEEFAKFRKIMRGMGSKKE 550 (609)
Q Consensus 524 ~~~~~~g~~~~A~~~~~~m~~~~~~~~ 550 (609)
..+.+.-..+.+.-+---..+.++.+.
T Consensus 484 ~~~a~~~~v~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 484 RRYTSGKGIPQSYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHHHcCCCHHHHHHHHHHhcCCCCC
Confidence 666666666666544333345555443
No 352
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=76.08 E-value=17 Score=32.80 Aligned_cols=60 Identities=8% Similarity=0.065 Sum_probs=39.8
Q ss_pred HHHHHHhCCChH-------HHHHHHHHHhccC--C----CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 488 LLGACKEHRLPN-------LGKLAALRVLDLK--P----NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 488 l~~~~~~~~~~~-------~a~~~~~~~~~~~--p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
+...|+..|+.+ .|.+.|+++.+.. | +.......++.++.+.|++++|.+.|.++...+-
T Consensus 124 lAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 124 LAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 334455555533 4555555554422 2 2245667799999999999999999999987543
No 353
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=75.73 E-value=62 Score=29.27 Aligned_cols=150 Identities=11% Similarity=0.072 Sum_probs=83.0
Q ss_pred HhHHHHHHHccCChhHHHHhhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCCh
Q 007288 49 ATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSL 128 (609)
Q Consensus 49 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 128 (609)
....++.|+..-++.-|-..++++.+|-. +-.+++ -|.+..+..-..++.+-....+++-+......++ +...|+.
T Consensus 133 lRRtMEiyS~ttRFalaCN~s~KIiEPIQ-SRCAiL-Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDM 208 (333)
T KOG0991|consen 133 LRRTMEIYSNTTRFALACNQSEKIIEPIQ-SRCAIL-RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDM 208 (333)
T ss_pred HHHHHHHHcccchhhhhhcchhhhhhhHH-hhhHhh-hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchH
Confidence 34456677777777777766666666522 222222 2334333333334444444455554554444443 3455666
Q ss_pred HHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHC
Q 007288 129 SNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLE 208 (609)
Q Consensus 129 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 208 (609)
.+|..-++.-... . .+-.+..+|.-..+|.......++..|. .+++++|.+++.++.+.
T Consensus 209 RQalNnLQst~~g------------------~--g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~l 267 (333)
T KOG0991|consen 209 RQALNNLQSTVNG------------------F--GLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKL 267 (333)
T ss_pred HHHHHHHHHHhcc------------------c--cccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHc
Confidence 6665444322211 1 2223455666666777777777776654 46889999999999888
Q ss_pred CCCCCHhhHHHHHHHH
Q 007288 209 GVEMNPYSFSIAVRAC 224 (609)
Q Consensus 209 g~~p~~~t~~~ll~~~ 224 (609)
|..|... .+.+.+.+
T Consensus 268 gysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 268 GYSPEDI-ITTLFRVV 282 (333)
T ss_pred CCCHHHH-HHHHHHHH
Confidence 8876543 33344443
No 354
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=74.99 E-value=38 Score=29.85 Aligned_cols=72 Identities=14% Similarity=0.104 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh---cCCCCChhHHHHHHHHHhhcCCHHHH
Q 007288 397 KEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND---YNVNPNKEIYGCVVDLLGRAGRVKEA 469 (609)
Q Consensus 397 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A 469 (609)
+.|...|-.+...+.--+......|...|. ..+.++++.++....+ .+-.+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 445555555555443333333333333333 4455555555555422 12244555666666666666665554
No 355
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=74.89 E-value=7.7 Score=29.21 Aligned_cols=46 Identities=17% Similarity=0.121 Sum_probs=34.7
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 502 KLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 502 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
...++..++.+|+|...-..++..+...|++++|.+.+-.+.+...
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 4456667778888888888899999999999999988888877543
No 356
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=74.23 E-value=28 Score=26.72 Aligned_cols=60 Identities=10% Similarity=0.187 Sum_probs=39.1
Q ss_pred HHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007288 297 ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALID 357 (609)
Q Consensus 297 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 357 (609)
+..+-++.+....+.|++....+.+.+|.+.+++..|.++++-+..+- ......|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 455556666667788899999999999999999999999988877542 122226665554
No 357
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.03 E-value=2.8 Score=39.62 Aligned_cols=89 Identities=17% Similarity=0.216 Sum_probs=65.7
Q ss_pred hcCCHHHHHHHHHhC-CCCCCH-hhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 007288 462 RAGRVKEAYELIKSM-PFKPDE-SVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFR 539 (609)
Q Consensus 462 ~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (609)
..|.++.|++.|... ...|.. ..|..-.+++.+.++...|++-+..+++++|+....|-.-..+....|+|++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 456677887777665 444433 333333466778888888888888888888888888888888888888888888888
Q ss_pred HHHHhCCCccc
Q 007288 540 KIMRGMGSKKE 550 (609)
Q Consensus 540 ~~m~~~~~~~~ 550 (609)
....+.++...
T Consensus 206 ~~a~kld~dE~ 216 (377)
T KOG1308|consen 206 ALACKLDYDEA 216 (377)
T ss_pred HHHHhccccHH
Confidence 88888776543
No 358
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=73.29 E-value=40 Score=27.99 Aligned_cols=78 Identities=10% Similarity=0.145 Sum_probs=37.9
Q ss_pred HHhHHHHHHHccCChhHHHHhhccCCC---------CCcccHHHHHHHHHcCCC-hhHHHHHHHHHHHCCCCCCcchHHH
Q 007288 48 LATNLIKSYFDEGLIEEARTLFDEMPE---------RDVVSWTVMIAGYTSFNC-HNQAWTVFVEMVRNEVNPNAFTLSS 117 (609)
Q Consensus 48 ~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~t~~~ 117 (609)
..|+++.-....+++...+.+++.+.. .+-.+|+.++.+...... ---+..+|+.|++.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 344455544555555555555544431 233445555555544333 2234445555555555555555555
Q ss_pred HHHHhhCC
Q 007288 118 VLKACKGM 125 (609)
Q Consensus 118 ll~~~~~~ 125 (609)
++.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 55555443
No 359
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=73.19 E-value=1.1e+02 Score=30.90 Aligned_cols=86 Identities=10% Similarity=0.060 Sum_probs=54.5
Q ss_pred HHhcCCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhH
Q 007288 157 YATCCISMDNARLVFNDMKW---KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG 233 (609)
Q Consensus 157 ~~~~g~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 233 (609)
+...| +++.+...+..... ....+..++++...+.|+++.|...-.-|....++ +...........-..|-++++
T Consensus 333 ~~~lg-~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 333 FSHLG-YYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHhh-hHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHH
Confidence 44555 77777777765543 35556777777778888888888877777766554 444443333344455667777
Q ss_pred HHHHHHHHHhC
Q 007288 234 KLIHAAVIKHG 244 (609)
Q Consensus 234 ~~~~~~~~~~g 244 (609)
.-.+.++...+
T Consensus 411 ~~~wk~~~~~~ 421 (831)
T PRK15180 411 YHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHhccC
Confidence 77777666544
No 360
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=73.01 E-value=7 Score=21.43 Aligned_cols=30 Identities=17% Similarity=-0.054 Sum_probs=26.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHhccCC
Q 007288 484 VWGPLLGACKEHRLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 513 (609)
.|..+...+...++++.|...+++.++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 566777889999999999999999998877
No 361
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=72.84 E-value=7.8 Score=25.68 Aligned_cols=31 Identities=10% Similarity=-0.045 Sum_probs=24.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHhccCCCCcc
Q 007288 487 PLLGACKEHRLPNLGKLAALRVLDLKPNMMG 517 (609)
Q Consensus 487 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 517 (609)
.+.-++.+.|+++.|....+.+++++|+|..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 3456788999999999999999999997643
No 362
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.66 E-value=1.1e+02 Score=34.01 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=18.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHH
Q 007288 80 WTVMIAGYTSFNCHNQAWTVFVEMVR 105 (609)
Q Consensus 80 ~~~li~~~~~~~~~~~a~~~~~~m~~ 105 (609)
|..|+..|...|++++|+++|.+...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 66777777777777777777777665
No 363
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=71.43 E-value=1.7e+02 Score=32.28 Aligned_cols=52 Identities=10% Similarity=0.040 Sum_probs=26.4
Q ss_pred cCChhhHHHHHHHHHHC----CCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHh
Q 007288 192 SGNGYGGLGVFKEMLLE----GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH 243 (609)
Q Consensus 192 ~g~~~~a~~~~~~m~~~----g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 243 (609)
.|+++.|.++-+..... -..+....+..+..+..-.|++++|..+.....+.
T Consensus 471 ~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 471 RGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred cCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 45566666655554432 11223334444455555566666666665555544
No 364
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.28 E-value=91 Score=28.80 Aligned_cols=176 Identities=13% Similarity=0.109 Sum_probs=110.9
Q ss_pred chHHHHHHHHhHHCCCCCC---HHhHHHHHHHHHhhccHHHHHHHHHHHHH---hCC--CCchhHHHHHHHHHHhcCCHH
Q 007288 295 SSECLNMFSKMKSERFSPN---CFTFTSIIAACATLAALSCGQQVHAGIVR---RGL--DGNLALANALIDMYAKCGNIS 366 (609)
Q Consensus 295 ~~~a~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~--~~~~~~~~~l~~~~~~~g~~~ 366 (609)
.++|+.-|.+..+..-.-. ......++....+.+++++....+.++.. +.+ .-+....|++++--....+.+
T Consensus 43 p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~ 122 (440)
T KOG1464|consen 43 PKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMD 122 (440)
T ss_pred HHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhH
Confidence 7889999998877432222 33556678888899999999998888753 222 123456677777666666666
Q ss_pred HHHHHHHhcCC-----CCc----chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CC-------HHHHHHHHHHHh
Q 007288 367 DSQKIFSEMSD-----RDL----VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR----PD-------RIVFMAVLTACS 426 (609)
Q Consensus 367 ~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~-------~~~~~~ll~~~~ 426 (609)
--..+|+.-.+ .+. .|-..|...|...+.+.+..++++++.+.--. .| ...|..=|..|.
T Consensus 123 LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT 202 (440)
T KOG1464|consen 123 LLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYT 202 (440)
T ss_pred HHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhh
Confidence 55555543321 122 24456777788888888888888888764111 11 135777777888
Q ss_pred ccCCHHHHHHHHHHhh-hcCCCCChhHHHHHH----HHHhhcCCHHHHH
Q 007288 427 HAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVV----DLLGRAGRVKEAY 470 (609)
Q Consensus 427 ~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~----~~~~~~g~~~~A~ 470 (609)
...+-..-..+++... -...-|.+.....+- ....+.|++++|.
T Consensus 203 ~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 203 EQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred hhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHH
Confidence 8887777777887762 222334544443222 2345678888774
No 365
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=70.15 E-value=76 Score=31.64 Aligned_cols=52 Identities=10% Similarity=0.100 Sum_probs=28.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHh--ccCCHHHHHHHHHHhhh
Q 007288 391 GAHGHGKEAIELFDEMVKSGVRPDRI--VFMAVLTACS--HAGLVDEGLKYFKSMND 443 (609)
Q Consensus 391 ~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~ 443 (609)
...+++..|.++++.+... +.++.. .+..+..+|. ..-++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3556677777777776665 444433 3333334433 24456666666666533
No 366
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=68.66 E-value=1e+02 Score=28.80 Aligned_cols=158 Identities=11% Similarity=0.000 Sum_probs=77.2
Q ss_pred ccCChhHHHHhhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHH----HHCCCCCCcchHHHHHHHhhCCCChH-HHH
Q 007288 58 DEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM----VRNEVNPNAFTLSSVLKACKGMKSLS-NAA 132 (609)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~ 132 (609)
+++++++|++++- .=...+.+.|+...|-++-..| .+.+.++|......++..+...+.-+ +-.
T Consensus 2 ~~kky~eAidLL~-----------~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLY-----------SGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHH-----------HHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHH-----------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 4566777776542 2233445566665555543333 33466666655555555544332111 223
Q ss_pred HHHHHHHHh---C--CCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 007288 133 LVHGMAIKE---G--LEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLL 207 (609)
Q Consensus 133 ~~~~~~~~~---~--~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 207 (609)
++.+.+++. | ..-++.....+...|.+.| ++.+|+..|-.-..++...+-.++..+...|...++
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~-~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------- 140 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEG-NYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------- 140 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT--HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H---------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhc-cHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch---------
Confidence 333333332 2 2245677788888888888 888888877666555444443344444444443333
Q ss_pred CCCCCCHhhH-HHHHHHHHccCCchhHHHHHHHHHHh
Q 007288 208 EGVEMNPYSF-SIAVRACASTGWVSFGKLIHAAVIKH 243 (609)
Q Consensus 208 ~g~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~ 243 (609)
..| ...+--+...+++..|...++...+.
T Consensus 141 -------dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 -------DLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp -------HHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred -------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 111 11222344567777777777666554
No 367
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=68.33 E-value=14 Score=26.80 Aligned_cols=45 Identities=13% Similarity=0.058 Sum_probs=32.8
Q ss_pred hCCChHHHHHHHHHHhccCCCCcc---hHHHHHHHHHhcCChHHHHHH
Q 007288 494 EHRLPNLGKLAALRVLDLKPNMMG---TYIILSNIYAAEGKWEEFAKF 538 (609)
Q Consensus 494 ~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~ 538 (609)
...+.+.|+..++.+++..++.+. ++..|+.+|...|++.+.+.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888886654443 444577778888888888776
No 368
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.18 E-value=95 Score=27.84 Aligned_cols=122 Identities=16% Similarity=0.136 Sum_probs=74.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhc--CCCCChhHHHHHHH
Q 007288 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP-DRIVFMAVLTACSHAGLVDEGLKYFKSMNDY--NVNPNKEIYGCVVD 458 (609)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~ 458 (609)
|.+..++.+.+.+...+|+...++-++. +| |..+-..++..+|-.|++++|..-++-.... ...+-...|..+|.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3445567778888899999988887775 44 4446667788899999999999888877442 33344566666665
Q ss_pred HHhhcCCHHHHH-HHHHhCCCCC-----CHhhHHHHH-HH--HHhCCChHHHHHHHHHHhccCC
Q 007288 459 LLGRAGRVKEAY-ELIKSMPFKP-----DESVWGPLL-GA--CKEHRLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 459 ~~~~~g~~~~A~-~~~~~~~~~p-----~~~~~~~l~-~~--~~~~~~~~~a~~~~~~~~~~~p 513 (609)
+- .+. ++|.-- ..| ....|...+ .+ |...|.-+....+-+..++-.|
T Consensus 81 ~e-------a~R~evfag~-~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~ 136 (273)
T COG4455 81 CE-------AARNEVFAGG-AVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAP 136 (273)
T ss_pred HH-------HHHHHHhccC-CCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCC
Confidence 42 222 233221 122 233454444 33 3334455556666677777655
No 369
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=67.05 E-value=65 Score=30.00 Aligned_cols=136 Identities=13% Similarity=0.090 Sum_probs=68.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 007288 386 MMIGYGAHGHGKEAIELFDEMVKSGVRPDRIV-------FMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVD 458 (609)
Q Consensus 386 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 458 (609)
+..-..+.+++++|+..+.+....|+..+..+ ...+...|...|++..-.+...... -.+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sr------------e~m~ 76 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSR------------EAME 76 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhH------------HHHH
Confidence 44455677888888888888888887766543 3445555555555544333332211 1112
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHhhHHH-HHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHH
Q 007288 459 LLGRAGRVKEAYELIKSMPFKPDESVWGP-LLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAK 537 (609)
Q Consensus 459 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 537 (609)
-+.+..-..-...++++.+..||..--.. +..+|. +.|.+--+.+++ ...-.-++.++.+.|+|.+|+.
T Consensus 77 ~ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~i-----ewA~rEkr~fLr-----~~Le~Kli~l~y~~~~Ysdala 146 (421)
T COG5159 77 DFTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALI-----EWADREKRKFLR-----LELECKLIYLLYKTGKYSDALA 146 (421)
T ss_pred HhcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHH-----HHHHHHHHHHHH-----HHHHHHHHHHHHhcccHHHHHH
Confidence 22222222223334444444443321111 111111 122221122221 1122347888999999999998
Q ss_pred HHHHHH
Q 007288 538 FRKIMR 543 (609)
Q Consensus 538 ~~~~m~ 543 (609)
+...+.
T Consensus 147 lIn~ll 152 (421)
T COG5159 147 LINPLL 152 (421)
T ss_pred HHHHHH
Confidence 876654
No 370
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=66.55 E-value=20 Score=25.97 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=22.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHH
Q 007288 392 AHGHGKEAIELFDEMVKSGVRPDR--IVFMAVLTACSHAGLVDEGLKY 437 (609)
Q Consensus 392 ~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~ 437 (609)
...+..+|+..|+...+.-..|.. .++..++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555543222221 1455555555555555554443
No 371
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=65.61 E-value=59 Score=24.91 Aligned_cols=84 Identities=17% Similarity=0.108 Sum_probs=50.8
Q ss_pred chhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCC-chHHHHHHHHhHHC
Q 007288 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSE 308 (609)
Q Consensus 230 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~ 308 (609)
.++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+.-||...|-+|-. .+.| .+.+..-+..|..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 45555555555544311 33333344556778899999999988888888888876644 3455 45555556666655
Q ss_pred CCCCCHHhH
Q 007288 309 RFSPNCFTF 317 (609)
Q Consensus 309 ~~~p~~~t~ 317 (609)
| .|...+|
T Consensus 98 g-~p~lq~F 105 (115)
T TIGR02508 98 G-DPRLQTF 105 (115)
T ss_pred C-CHHHHHH
Confidence 4 3444444
No 372
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=65.37 E-value=94 Score=27.15 Aligned_cols=56 Identities=16% Similarity=0.259 Sum_probs=35.9
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHhCC--------------CCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 007288 319 SIIAACATLAALSCGQQVHAGIVRRGL--------------DGNLALANALIDMYAKCGNISDSQKIFSE 374 (609)
Q Consensus 319 ~ll~~~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 374 (609)
+++..|.+..++.++..+++.+.+..+ .+--++.|.-...+.++|.++.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 455667777788888888887765322 22334556666666666666666666664
No 373
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.31 E-value=1.1e+02 Score=32.01 Aligned_cols=130 Identities=13% Similarity=0.005 Sum_probs=62.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 007288 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD 432 (609)
Q Consensus 353 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 432 (609)
+.++..+.+.|-.++|+++-. .|+. -.....+.|+++.|.++..+.. +..-|..|.++..+.+++.
T Consensus 618 t~va~Fle~~g~~e~AL~~s~---D~d~-----rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~ 683 (794)
T KOG0276|consen 618 TKVAHFLESQGMKEQALELST---DPDQ-----RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELP 683 (794)
T ss_pred hhHHhHhhhccchHhhhhcCC---Chhh-----hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccch
Confidence 445555555666665554321 1111 1222345566666666555432 3455666666666666666
Q ss_pred HHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHH
Q 007288 433 EGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRV 508 (609)
Q Consensus 433 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 508 (609)
.|.+.|.+..+ |..|+-.+...|+-+....+-.... .....|...-++...|+++++.+++...
T Consensus 684 lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~---~~g~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 684 LASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAK---KQGKNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHH---hhcccchHHHHHHHcCCHHHHHHHHHhc
Confidence 66666665543 2234445555555443322222220 0011122233455566666666655443
No 374
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=63.23 E-value=3.8e+02 Score=33.44 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007288 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476 (609)
Q Consensus 416 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 476 (609)
.+|....+.+.++|.++.|...+-...+.+ .| ..+--..+.+...|+-..|+.++++.
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~ 1728 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEI 1728 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 367777777777888888877766665544 22 33344556677788888888877665
No 375
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=63.14 E-value=12 Score=20.98 Aligned_cols=30 Identities=10% Similarity=0.078 Sum_probs=22.7
Q ss_pred CChHHHHHHHHHHhccCCCCcchHHHHHHH
Q 007288 496 RLPNLGKLAALRVLDLKPNMMGTYIILSNI 525 (609)
Q Consensus 496 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 525 (609)
|+.+.+..++++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 467788888888888888777777766543
No 376
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=62.78 E-value=20 Score=22.68 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=13.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 007288 386 MMIGYGAHGHGKEAIELFDEMVKS 409 (609)
Q Consensus 386 li~~~~~~g~~~~A~~~~~~m~~~ 409 (609)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 344555555555555555555543
No 377
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=62.58 E-value=17 Score=32.54 Aligned_cols=55 Identities=13% Similarity=0.136 Sum_probs=37.8
Q ss_pred HhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 493 KEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 493 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
.+.++.+.+.+++.+++++-|.....|..++..-.++|+.+.|.+.+++..+.+.
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 4556666777777777777777777777777777777777777777777666443
No 378
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=62.10 E-value=22 Score=36.44 Aligned_cols=100 Identities=13% Similarity=-0.023 Sum_probs=62.5
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHhhHHHHHHHHHhCCChHHHHHH
Q 007288 427 HAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PF-KPDESVWGPLLGACKEHRLPNLGKLA 504 (609)
Q Consensus 427 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~ 504 (609)
..|+...|...+.........-.....-.|.+.+.+.|...+|-.++.+. .+ ...+.++..+.+++....+.+.|++.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 35677777777776632221112222334556666667666676666544 21 23445666777888888888888888
Q ss_pred HHHHhccCCCCcchHHHHHHHH
Q 007288 505 ALRVLDLKPNMMGTYIILSNIY 526 (609)
Q Consensus 505 ~~~~~~~~p~~~~~~~~l~~~~ 526 (609)
++.+.+..|+++..-+.|...-
T Consensus 699 ~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 699 FRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHHHhcCCCChhhHHHHHHHH
Confidence 8888888887777666655443
No 379
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=60.51 E-value=91 Score=29.69 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=37.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCCHHHHHHHHHHhhh
Q 007288 385 SMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI---VFMAVLTACSHAGLVDEGLKYFKSMND 443 (609)
Q Consensus 385 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~ 443 (609)
.|..+-.+.|+..+|.+.++++.+. .|-.. ....|+.+|....-+.....++-+..+
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4555666778888888888887764 23222 445677777777766666666655543
No 380
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=60.38 E-value=33 Score=29.58 Aligned_cols=43 Identities=12% Similarity=0.045 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 498 PNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 498 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
+++|...|+++...+|+ ...|..-+.+. +.|-++..++.+.+.
T Consensus 96 F~kA~~~FqkAv~~~P~-ne~Y~ksLe~~------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPN-NELYRKSLEMA------AKAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhcCCC-cHHHHHHHHHH------HhhHHHHHHHHHHHh
Confidence 66788888888889995 45666655554 346777777776655
No 381
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=59.37 E-value=2.5e+02 Score=30.00 Aligned_cols=59 Identities=8% Similarity=-0.032 Sum_probs=31.7
Q ss_pred cchhhHHHHHHHhcCCCHHHHHHHHccCCCCC-hhhHHHHHHHHHhcCChhhHHHHHHHHHHC
Q 007288 147 IYVENSLMDVYATCCISMDNARLVFNDMKWKN-DVSWTTLITGYAHSGNGYGGLGVFKEMLLE 208 (609)
Q Consensus 147 ~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 208 (609)
...+..|+..+... +.+.-.++++++.. . ...|..++++....|-.....-+.+.+...
T Consensus 310 ~~~f~~lv~~lR~~--~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~ 369 (574)
T smart00638 310 AAKFLRLVRLLRTL--SEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNK 369 (574)
T ss_pred HHHHHHHHHHHHhC--CHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 34455555555443 55555555555544 3 456666777777666654444444444433
No 382
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=58.43 E-value=31 Score=32.33 Aligned_cols=46 Identities=11% Similarity=-0.010 Sum_probs=21.9
Q ss_pred hCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 007288 494 EHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFR 539 (609)
Q Consensus 494 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (609)
+.|+.++|..+|+.++.+.|.++.....++......++.-+|..+|
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y 173 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCY 173 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhh
Confidence 4445555555555555555555444444444444444444444433
No 383
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.50 E-value=2.2e+02 Score=29.72 Aligned_cols=122 Identities=15% Similarity=0.087 Sum_probs=0.0
Q ss_pred HhccCCHHHHHHHHHHh-hhcCC----------CCChhHHHHHHHHHhhcCCHHHHHHHHHhC-----------------
Q 007288 425 CSHAGLVDEGLKYFKSM-NDYNV----------NPNKEIYGCVVDLLGRAGRVKEAYELIKSM----------------- 476 (609)
Q Consensus 425 ~~~~~~~~~a~~~~~~~-~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------------- 476 (609)
+.....++++...|... ..... +-.+.+.-.+.+.+...|+.+-|..++++.
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred eecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Q ss_pred -----CCCCCHhhHHHHH----HHHHhCCChHHHHHHHHHHhccCCC-CcchHHHHHHHHH-hcCChHHHHHHHHHHHhC
Q 007288 477 -----PFKPDESVWGPLL----GACKEHRLPNLGKLAALRVLDLKPN-MMGTYIILSNIYA-AEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 477 -----~~~p~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~ 545 (609)
=..|....+...+ ..+.+.|-+..|.+..+.++.++|. |+.....+++.|+ +..+|.--+++++.....
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q ss_pred C
Q 007288 546 G 546 (609)
Q Consensus 546 ~ 546 (609)
+
T Consensus 408 n 408 (665)
T KOG2422|consen 408 N 408 (665)
T ss_pred c
No 384
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=57.23 E-value=23 Score=31.26 Aligned_cols=35 Identities=23% Similarity=0.186 Sum_probs=16.6
Q ss_pred CCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCC
Q 007288 479 KPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 479 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 513 (609)
.|+..++..++.++...|+.++|.+..+++..+.|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34444444444444444444444444444444444
No 385
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=57.17 E-value=84 Score=25.44 Aligned_cols=42 Identities=5% Similarity=0.054 Sum_probs=32.8
Q ss_pred HHHHHHHHHhc--cCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 007288 500 LGKLAALRVLD--LKPNMMGTYIILSNIYAAEGKWEEFAKFRKI 541 (609)
Q Consensus 500 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (609)
.+.++|+.+.. ++-..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77777777755 5556778888899999999999999998865
No 386
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=57.05 E-value=1.8e+02 Score=27.53 Aligned_cols=59 Identities=7% Similarity=0.131 Sum_probs=35.6
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCcchHHHHHHHHHhcCCHHHHHHHH
Q 007288 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSD-----RDLVTWTSMMIGYGAHGHGKEAIELF 403 (609)
Q Consensus 345 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~ 403 (609)
-.++..+...+++.+++.+++..-.++++.... .|...|..+|......|+..-...+.
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 345555556666666666666666666665542 35566777777777777755444333
No 387
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=56.52 E-value=49 Score=30.94 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=20.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007288 389 GYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439 (609)
Q Consensus 389 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 439 (609)
.|..+|.+.+|.++-++.+... +.+...+-.++..+...|+--.+..-++
T Consensus 288 ~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khye 337 (361)
T COG3947 288 AYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYE 337 (361)
T ss_pred HHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHH
Confidence 3444444444444444444321 1222333344444444444333333333
No 388
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=56.50 E-value=57 Score=24.27 Aligned_cols=35 Identities=6% Similarity=0.114 Sum_probs=21.1
Q ss_pred CHHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhH
Q 007288 163 SMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGG 198 (609)
Q Consensus 163 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 198 (609)
+.+.|.++++.++ +....|..++.++-..|.-+-|
T Consensus 51 ~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 51 NESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred cHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 6666666666666 5555666666666665554433
No 389
>PRK10941 hypothetical protein; Provisional
Probab=56.16 E-value=50 Score=30.98 Aligned_cols=64 Identities=8% Similarity=-0.041 Sum_probs=40.6
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcc
Q 007288 454 GCVVDLLGRAGRVKEAYELIKSM-PFKPD-ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG 517 (609)
Q Consensus 454 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 517 (609)
+.+-.+|.+.++++.|++..+.+ .+.|+ ..-+.--.-.|.+.|.+..|..-++..++..|+++.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 34555666777777777777766 34443 334444555577777777777777777777775544
No 390
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=56.14 E-value=48 Score=31.65 Aligned_cols=93 Identities=15% Similarity=0.032 Sum_probs=69.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC--C--CCC--CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHH
Q 007288 452 IYGCVVDLLGRAGRVKEAYELIKSM--P--FKP--DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~--~--~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 525 (609)
.|.-=.+-|.+..++..|...|.+. . -.| +.+.|+.=..+-...||+..++.-..+++.++|.+...|..=+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 3444456677888899998888776 1 122 234455445556677899999999999999999999999998999
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 007288 526 YAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 526 ~~~~g~~~~A~~~~~~m~~ 544 (609)
+....++++|..+.+...+
T Consensus 163 ~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 9999898888777666543
No 391
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=55.62 E-value=1.6e+02 Score=27.59 Aligned_cols=87 Identities=16% Similarity=0.143 Sum_probs=46.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHH----
Q 007288 387 MIGYGAHGHGKEAIELFDEMVKS--GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLL---- 460 (609)
Q Consensus 387 i~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---- 460 (609)
|++++..+++.+++...-+-.+. .++|...-. -|-.|.+.+.+..+.++-..-....-.-+..-|..+++.|
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleL--CILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILEL--CILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 56666777777666554444332 233333333 3334667777776666655553322222333355555444
Q ss_pred -hhcCCHHHHHHHHHh
Q 007288 461 -GRAGRVKEAYELIKS 475 (609)
Q Consensus 461 -~~~g~~~~A~~~~~~ 475 (609)
.-.|.+++|.++...
T Consensus 168 LlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 168 LLPLGHFSEAEELVVG 183 (309)
T ss_pred HhccccHHHHHHHHhc
Confidence 446778888777743
No 392
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=55.55 E-value=74 Score=24.92 Aligned_cols=55 Identities=15% Similarity=0.208 Sum_probs=38.0
Q ss_pred hHHHHHHHccCChhHHHHhhccCCC----------CCcccHHHHHHHHHcCCChhHHHHHHHHHHH
Q 007288 50 TNLIKSYFDEGLIEEARTLFDEMPE----------RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR 105 (609)
Q Consensus 50 ~~li~~~~~~g~~~~A~~~~~~~~~----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 105 (609)
++|+.+|... +......++..=.. ....-|..++.-|...|.+++|++++.++..
T Consensus 3 TaLlk~Yl~~-~~~~l~~llr~~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 3 TALLKCYLET-NPSLLGPLLRLPNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHh-CHHHHHHHHccCCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 5677777777 66666655543211 1223588888888888888899888888876
No 393
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=54.93 E-value=1e+02 Score=24.07 Aligned_cols=78 Identities=15% Similarity=0.021 Sum_probs=43.5
Q ss_pred CchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCC-chHHHHHHHHhHH
Q 007288 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKS 307 (609)
Q Consensus 229 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~ 307 (609)
..++|..|.+.+...+- ....+--.-+..+.+.|++++|...=.....||...|-+|- -.+.| .+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHh
Confidence 45667777777666552 33444444555677788888885544444556777765553 34566 5666666665654
Q ss_pred CC
Q 007288 308 ER 309 (609)
Q Consensus 308 ~~ 309 (609)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 43
No 394
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=54.85 E-value=1.9e+02 Score=27.29 Aligned_cols=64 Identities=6% Similarity=-0.089 Sum_probs=34.7
Q ss_pred CCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHh-CCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 007288 210 VEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH-GFGSNLPVMNSILDMYCRFDCLSDANQYFD 273 (609)
Q Consensus 210 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 273 (609)
-.++..+...++..++..+++..-.++++..... +...|...|..+|+.....|+..-..++.+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 4455555555556666666666555555554443 334455555555555555555554444443
No 395
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=53.87 E-value=2.6e+02 Score=28.55 Aligned_cols=267 Identities=11% Similarity=0.040 Sum_probs=124.9
Q ss_pred hhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH--HHHHHhcC----CC-----------CcchHHHHHH
Q 007288 326 TLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDS--QKIFSEMS----DR-----------DLVTWTSMMI 388 (609)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~~~----~~-----------~~~~~~~li~ 388 (609)
..+.++...+.++.+...|.......+|.-+..|.+.|....- ++-++.+. .| +...+.....
T Consensus 29 ~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~aV 108 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFAV 108 (696)
T ss_pred CCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhhe
Confidence 3456777777788887777777777777777777777654332 12222211 11 1122223333
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHhccCCHHHHHHHHHHh---hhc-CCCCC--hhHHHHH
Q 007288 389 GYGAHGHGKEAIELFDEMVKSGVRPDRI------VFMAVLTACSHAGLVDEGLKYFKSM---NDY-NVNPN--KEIYGCV 456 (609)
Q Consensus 389 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~------~~~~ll~~~~~~~~~~~a~~~~~~~---~~~-~~~~~--~~~~~~l 456 (609)
.|.....+..|+++....... +.|-.. ++. ....+......++|+.++..+ ... ...++ ...-
T Consensus 109 i~yh~~~~g~a~~~~~~lv~r-~e~le~~~aa~v~~l-~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~--- 183 (696)
T KOG2471|consen 109 IFYHHEENGSAMQLSSNLVSR-TESLESSSAASVTLL-SDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPA--- 183 (696)
T ss_pred eeeeHhhcchHHHhhhhHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccch---
Confidence 344445556666665555432 122111 111 112233444556666554443 111 11111 1111
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHH
Q 007288 457 VDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFA 536 (609)
Q Consensus 457 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 536 (609)
....+.+....|..-+.-.. |....-.--+.++.+..+...++.-.+-+....-+++.....-...+.-.|++..|.
T Consensus 184 -nn~~kt~s~~aAe~s~~~a~--~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~ 260 (696)
T KOG2471|consen 184 -NNLLKTLSPSAAERSFSTAD--LKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAM 260 (696)
T ss_pred -hhhcccCCcchhcccchhhc--cchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHH
Confidence 12223333333333222111 111122223355566666777776666665555556666667788888999999999
Q ss_pred HHHHHHH---hCCCcccCceeEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHcCcccCccc
Q 007288 537 KFRKIMR---GMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDC 600 (609)
Q Consensus 537 ~~~~~m~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~ 600 (609)
+++...- ..|...+|..+.-...|.+..+.-.-..|.-....+.+..+-+..-...|++|-+.+
T Consensus 261 KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 261 KLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 8765441 123222322211111112111111112344444445444443334445678887654
No 396
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=53.76 E-value=1.7e+02 Score=26.70 Aligned_cols=113 Identities=12% Similarity=0.073 Sum_probs=64.0
Q ss_pred cCCHHHHHHHHHhcC--CCCc-chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHH
Q 007288 362 CGNISDSQKIFSEMS--DRDL-VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI-VFMAVLTACSHAGLVDEGLKY 437 (609)
Q Consensus 362 ~g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~ 437 (609)
..++..|...|.+.. .|++ .-|+.-+.++.+..+++.+..--.+.++ +.||.. ....+.........+++|+..
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHHH
Confidence 345556666555544 4555 3455667777777778777776666665 567665 333444556666777888877
Q ss_pred HHHh----hhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007288 438 FKSM----NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476 (609)
Q Consensus 438 ~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 476 (609)
+.+. ....+.+.......|..+--..=...+..++.++.
T Consensus 101 Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 101 LQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 7776 23334444455555554433333333444444443
No 397
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=53.60 E-value=14 Score=26.64 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=19.0
Q ss_pred cHHHHHHHHHHHHHHHHHcCcccCcccc
Q 007288 574 HTQYVYGVLEMLIRHMNETAYEPDIDCL 601 (609)
Q Consensus 574 ~~~~~~~~~~~l~~~m~~~g~~pd~~~~ 601 (609)
...++.+.+++..++++..||.||...+
T Consensus 6 ~li~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 6 DLIRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 3456777888999999999999998654
No 398
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=53.22 E-value=3.2e+02 Score=29.43 Aligned_cols=150 Identities=15% Similarity=0.079 Sum_probs=76.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-CCC-----HHHHHHHHH--HHhccCCHHHHHHHHH--------HhhhcCCCCChhHHH
Q 007288 391 GAHGHGKEAIELFDEMVKSGV-RPD-----RIVFMAVLT--ACSHAGLVDEGLKYFK--------SMNDYNVNPNKEIYG 454 (609)
Q Consensus 391 ~~~g~~~~A~~~~~~m~~~g~-~p~-----~~~~~~ll~--~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~ 454 (609)
+-.+++..|...+..|.+..- .|+ ...+...+. .+...|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 456889999999998886321 111 123333333 3445689999999997 444545454544443
Q ss_pred H--HHHHHhhcC--CHHH--HHHHHHhC-C---CC--CCHhhHHHHH-HHHHhCC--ChHHHHHHHHHHhccC--C-CCc
Q 007288 455 C--VVDLLGRAG--RVKE--AYELIKSM-P---FK--PDESVWGPLL-GACKEHR--LPNLGKLAALRVLDLK--P-NMM 516 (609)
Q Consensus 455 ~--l~~~~~~~g--~~~~--A~~~~~~~-~---~~--p~~~~~~~l~-~~~~~~~--~~~~a~~~~~~~~~~~--p-~~~ 516 (609)
. ++-.+...+ ...+ +.++++.+ + .. .+..++..++ .++.... ...++...+...++.- . ++.
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 2 222222222 2223 77777776 1 12 2444555554 3332222 2235555555444322 1 111
Q ss_pred ----chHHHHHHHHHhcCChHHHHHHHHH
Q 007288 517 ----GTYIILSNIYAAEGKWEEFAKFRKI 541 (609)
Q Consensus 517 ----~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (609)
.+++.+...+. .|+..+..+....
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~ 559 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSAR 559 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 12333444444 6777776555444
No 399
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=53.01 E-value=43 Score=25.35 Aligned_cols=53 Identities=13% Similarity=-0.031 Sum_probs=36.0
Q ss_pred HHhCCChHHHHHHHHHHhccCCC----C-----cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 492 CKEHRLPNLGKLAALRVLDLKPN----M-----MGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 492 ~~~~~~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
..+.|++..|.+.+.+....... . ......++......|.+++|...+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45667777777766666553221 1 22344577788889999999999988875
No 400
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=52.71 E-value=60 Score=20.90 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=21.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007288 391 GAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLT 423 (609)
Q Consensus 391 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 423 (609)
.+.|-.+++..++++|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345666666667777777776666666665554
No 401
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=52.60 E-value=55 Score=27.10 Aligned_cols=63 Identities=8% Similarity=-0.138 Sum_probs=44.9
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 007288 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK 531 (609)
Q Consensus 466 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 531 (609)
.+.|.++.+-||- ..............|++..|.++...++..+|+|...-...+++|.+.|.
T Consensus 57 ~~~A~~~v~l~GG---~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 57 EEEAKRYVELAGG---ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 4567777777752 23333444567789999999999999999999988888888888877654
No 402
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.25 E-value=3.5 Score=38.98 Aligned_cols=102 Identities=6% Similarity=-0.001 Sum_probs=73.6
Q ss_pred HHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCcccCceeEEEeCCEEEEEEecCCC
Q 007288 492 CKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKM 571 (609)
Q Consensus 492 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (609)
....|.++.|++.+..+++++|+....|..-+.++.+.+++..|++-++...+.+.....++-|... .| +.
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~---A~------rl 194 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGY---AE------RL 194 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhH---HH------HH
Confidence 3456789999999999999999999999999999999999999999999888765543333322211 11 11
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCcccCcccccccCC
Q 007288 572 GSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606 (609)
Q Consensus 572 ~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~ 606 (609)
.+...+ ....+..-++.+|.+++.-|+..|.
T Consensus 195 lg~~e~----aa~dl~~a~kld~dE~~~a~lKeV~ 225 (377)
T KOG1308|consen 195 LGNWEE----AAHDLALACKLDYDEANSATLKEVF 225 (377)
T ss_pred hhchHH----HHHHHHHHHhccccHHHHHHHHHhc
Confidence 112222 2345566678889998888887775
No 403
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.08 E-value=3.5e+02 Score=30.29 Aligned_cols=29 Identities=17% Similarity=-0.023 Sum_probs=21.3
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 516 MGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
...|...+..+.+.|+.++|+.++-...+
T Consensus 684 ~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 684 DELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 45666677777788888888888766654
No 404
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=51.68 E-value=1.1e+02 Score=23.77 Aligned_cols=79 Identities=11% Similarity=0.103 Sum_probs=41.1
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007288 329 ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408 (609)
Q Consensus 329 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 408 (609)
..++|..|.+.+...+. ....+--.-+..+.+.|++++|...=.....||...|-+|- -.+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHh
Confidence 45566666666655543 22222223344566777777774443344456777665543 3566777777777776665
Q ss_pred CC
Q 007288 409 SG 410 (609)
Q Consensus 409 ~g 410 (609)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 54
No 405
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=51.41 E-value=59 Score=20.93 Aligned_cols=31 Identities=10% Similarity=0.083 Sum_probs=15.8
Q ss_pred hcCChhhHHHHHHHHHHCCCCCCHhhHHHHH
Q 007288 191 HSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV 221 (609)
Q Consensus 191 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 221 (609)
+.|-..++..++++|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444555555555555555555555444443
No 406
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=51.20 E-value=78 Score=24.82 Aligned_cols=27 Identities=19% Similarity=0.441 Sum_probs=20.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007288 382 TWTSMMIGYGAHGHGKEAIELFDEMVK 408 (609)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 408 (609)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 567777777777777777777777766
No 407
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.52 E-value=2e+02 Score=26.24 Aligned_cols=55 Identities=13% Similarity=0.209 Sum_probs=31.2
Q ss_pred HhhcCCHHHHHHHHHhC---CCCCCHhhHHH---HH--HHHHhC-CChHHHHHHHHHHhccCCC
Q 007288 460 LGRAGRVKEAYELIKSM---PFKPDESVWGP---LL--GACKEH-RLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 460 ~~~~g~~~~A~~~~~~~---~~~p~~~~~~~---l~--~~~~~~-~~~~~a~~~~~~~~~~~p~ 514 (609)
-+..+++.+|+++|++. ....+..-|.. ++ ..|.-. .+.-.+...+++..+++|.
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 34567788888888776 22222222221 22 223333 5666677778888888884
No 408
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=50.15 E-value=1e+02 Score=22.91 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=26.1
Q ss_pred hcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHH
Q 007288 361 KCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400 (609)
Q Consensus 361 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 400 (609)
..|+.+.|.+++..+. .....|..++.++...|.-+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4566777777777777 66667777777777666655443
No 409
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=49.85 E-value=61 Score=28.59 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=15.9
Q ss_pred CCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007288 446 VNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476 (609)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 476 (609)
..|+..+|..++..+...|+.++|.+...++
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445555555555555555555555555444
No 410
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=49.51 E-value=1.8e+02 Score=25.51 Aligned_cols=52 Identities=13% Similarity=0.207 Sum_probs=29.4
Q ss_pred HHHHhcCCHHHHHHHHHhcCC------CChhHHHHHHH-HHHhCC---chHHHHHHHHhHHC
Q 007288 257 DMYCRFDCLSDANQYFDEMTE------KDLITWNTIIA-GYEKSG---SSECLNMFSKMKSE 308 (609)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~-~~~~~~---~~~a~~~~~~m~~~ 308 (609)
-.....|++++|..-++.+.+ .-...|..+.. +++..+ +.+|..++.-....
T Consensus 37 I~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 37 IFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 334455666666666665543 12334555555 666666 56666666665544
No 411
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=49.15 E-value=77 Score=33.33 Aligned_cols=73 Identities=10% Similarity=0.120 Sum_probs=44.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCCHH------HHHHHHHHhhhcCCCCChhHHHHH
Q 007288 385 SMMIGYGAHGHGKEAIELFDEMVKS--GVRPDRIVFMAVLTACSHAGLVD------EGLKYFKSMNDYNVNPNKEIYGCV 456 (609)
Q Consensus 385 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 456 (609)
+|+.+|..+|++-++.++++.+... |-+.-...|+..|+...+.|.++ .|.+.++.. .+.-|..+|..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 6778888888888888888877753 33333456777777777777653 233333332 244466666666
Q ss_pred HHHH
Q 007288 457 VDLL 460 (609)
Q Consensus 457 ~~~~ 460 (609)
+.+-
T Consensus 110 ~~~s 113 (1117)
T COG5108 110 CQAS 113 (1117)
T ss_pred HHhh
Confidence 5543
No 412
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=49.04 E-value=2.8e+02 Score=27.48 Aligned_cols=55 Identities=11% Similarity=0.108 Sum_probs=34.9
Q ss_pred HHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHh-hcCCHHHHHHHHHhC
Q 007288 422 LTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG-RAGRVKEAYELIKSM 476 (609)
Q Consensus 422 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 476 (609)
+..+.+.|-+..|.++.+-+...+..-|+.....+|+.|+ ++++++--+++++..
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 3455667777777777777766555545555556666654 666666666666654
No 413
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=48.60 E-value=1.4e+02 Score=29.99 Aligned_cols=57 Identities=14% Similarity=0.191 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----------CCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007288 351 LANALIDMYAKCGNISDSQKIFSEMSD-----------RDLVTWTSMMIGYGAHGHGKEAIELFDEMV 407 (609)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 407 (609)
....|++.++-.|++..|+++++.+.- -.+.++.-+.-+|...+++.+|.++|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888889999999999887751 245678888889999999999999998765
No 414
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=48.27 E-value=3.1e+02 Score=27.75 Aligned_cols=121 Identities=11% Similarity=0.026 Sum_probs=52.5
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 007288 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS 426 (609)
Q Consensus 347 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 426 (609)
++..+-..-+.+++..+..+..-.+..-....|...-..-+.+....|. ..|...+..... .++......+.....
T Consensus 159 ~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~---~~g~~~~~~l~~~la 234 (410)
T TIGR02270 159 EDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQV---LEGGPHRQRLLVLLA 234 (410)
T ss_pred CCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHh---ccCccHHHHHHHHHH
Confidence 3444444445555555543333333323334455555555555566665 455555444332 122222222222222
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 007288 427 HAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMP 477 (609)
Q Consensus 427 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 477 (609)
..|. +++...+..+.+. + .+-...+.++.+.|+...+--+.+.|.
T Consensus 235 l~~~-~~a~~~L~~ll~d---~--~vr~~a~~AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 235 VAGG-PDAQAWLRELLQA---A--ATRREALRAVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred hCCc-hhHHHHHHHHhcC---h--hhHHHHHHHHHHcCCcchHHHHHHHhc
Confidence 2222 2444444444321 1 134445556666666655555555543
No 415
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=48.21 E-value=1.3e+02 Score=24.33 Aligned_cols=70 Identities=16% Similarity=0.324 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh-hhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007288 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476 (609)
Q Consensus 398 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 476 (609)
+..+-++.+..-.+.|+......-+++|.+.+|+..|.++|+.. .+.| +....|-.+++ +..-+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g--~~k~~Y~y~v~---------elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG--AQKQVYPYYVK---------ELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc--cHHHHHHHHHH---------HHHHHHHHh
Confidence 34444555566678899999999999999999999999999887 3433 33335655543 344455555
Q ss_pred CC
Q 007288 477 PF 478 (609)
Q Consensus 477 ~~ 478 (609)
|+
T Consensus 136 GI 137 (149)
T KOG4077|consen 136 GI 137 (149)
T ss_pred CC
Confidence 53
No 416
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=47.91 E-value=34 Score=32.24 Aligned_cols=38 Identities=16% Similarity=0.132 Sum_probs=27.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHH
Q 007288 181 SWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFS 218 (609)
Q Consensus 181 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 218 (609)
-||..|....+.||+++|+.++++.++.|+.--..+|.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 36677888888888888888888888877764444443
No 417
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=47.89 E-value=4.8e+02 Score=29.83 Aligned_cols=256 Identities=9% Similarity=-0.026 Sum_probs=143.3
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHhCCchHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCc
Q 007288 269 NQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348 (609)
Q Consensus 269 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 348 (609)
..+...+.+++...-...+..+.+.+.+++...+...... +|...-...+.++...+........+..+.+. +|
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d 697 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PD 697 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CC
Confidence 4555556677777777777777777755566656555532 34444444455554443211112233333332 45
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 007288 349 LALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHA 428 (609)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 428 (609)
..+-...+.++...+.- ....+...+..+|...-...+.++.+.+..+. +.... -.++...-.....++...
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHh
Confidence 55656666666654321 12345556667777666666777766554332 22222 245666666666666666
Q ss_pred CCHHH-HHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHH
Q 007288 429 GLVDE-GLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALR 507 (609)
Q Consensus 429 ~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 507 (609)
+..+. +...+..+.+ .++..+-...+.++...|..+.+...+..+-..++..+-...+.++...+.. ++...+..
T Consensus 770 ~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-~a~~~L~~ 845 (897)
T PRK13800 770 GAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAAD-VAVPALVE 845 (897)
T ss_pred ccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcccc-chHHHHHH
Confidence 65432 3344444432 3567777888888988888765544443332346666666677777777653 45555555
Q ss_pred HhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 508 VLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 508 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
+++ +| +...-...+.++.+.+.-.++...+....+
T Consensus 846 ~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 846 ALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred Hhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 553 33 455666677777775434566666666654
No 418
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=47.30 E-value=2e+02 Score=25.28 Aligned_cols=58 Identities=9% Similarity=0.247 Sum_probs=37.5
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhcCC--------------CCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007288 419 MAVLTACSHAGLVDEGLKYFKSMNDYNV--------------NPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476 (609)
Q Consensus 419 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 476 (609)
.+++-.|-+.-++.++.++++.|.+..+ .+.-...|.-...+.++|.+|.|+.++++-
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 3455566677778888888877744322 223345566667777777777777777765
No 419
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=47.04 E-value=4.4e+02 Score=29.24 Aligned_cols=216 Identities=13% Similarity=-0.020 Sum_probs=115.5
Q ss_pred HhhccHHHHHHHHHHHHHhCCCCchh-------HHHHHH-HHHHhcCCHHHHHHHHHhcCC--------CCcchHHHHHH
Q 007288 325 ATLAALSCGQQVHAGIVRRGLDGNLA-------LANALI-DMYAKCGNISDSQKIFSEMSD--------RDLVTWTSMMI 388 (609)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~ 388 (609)
....++.+|..+..++...-..|+.. .++.|- ......|+++.|.++-+.... ..+..+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45678888888888776543232221 223332 123346888888887776552 35566777778
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHH--HHHhccCC--HHHHHHHHHHhhh-cCCC-----CChhHHHH
Q 007288 389 GYGAHGHGKEAIELFDEMVKSGVRPDRI---VFMAVL--TACSHAGL--VDEGLKYFKSMND-YNVN-----PNKEIYGC 455 (609)
Q Consensus 389 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~ll--~~~~~~~~--~~~a~~~~~~~~~-~~~~-----~~~~~~~~ 455 (609)
+..-.|++++|..+.++..+.--.-+.. .+..+. ..+...|. +.+....|..... .... +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888899999998887776532223333 222222 23455663 3333333433311 1111 11233344
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-------CCCCCHhhHH--HHHHHHHhCCChHHHHHHHHHHhccCCCC--cchHHH---
Q 007288 456 VVDLLGRAGRVKEAYELIKSM-------PFKPDESVWG--PLLGACKEHRLPNLGKLAALRVLDLKPNM--MGTYII--- 521 (609)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~--- 521 (609)
+..++.+ .+.+..-...- ...|-..... .|.......|+.+.|.....++..+.-+. ...|..
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4444444 33332222111 1122222222 45577889999999999888876632211 222221
Q ss_pred --HHHHHHhcCChHHHHHHHHHHH
Q 007288 522 --LSNIYAAEGKWEEFAKFRKIMR 543 (609)
Q Consensus 522 --l~~~~~~~g~~~~A~~~~~~m~ 543 (609)
-.......|+.+.|...+.+-.
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHhcc
Confidence 2223345788888888776643
No 420
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=46.85 E-value=2.3e+02 Score=25.87 Aligned_cols=56 Identities=16% Similarity=0.297 Sum_probs=37.3
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007288 368 SQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTAC 425 (609)
Q Consensus 368 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 425 (609)
+..+|+-.-+|.+.....++..+. .+++++|.+++.++.+.|+.|... .+.+.+.+
T Consensus 227 ~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 227 QENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred hhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 344555556677777777776654 467889999999988888877543 33344443
No 421
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=46.08 E-value=98 Score=32.13 Aligned_cols=135 Identities=15% Similarity=0.054 Sum_probs=89.3
Q ss_pred CCCHHHHHHHHHHHhccC--CHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC--CHhhHH
Q 007288 412 RPDRIVFMAVLTACSHAG--LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP--DESVWG 486 (609)
Q Consensus 412 ~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~ 486 (609)
.|+..+...++.-....- .-+-+..++..|.+ -..|--...|.-.-.+...|+...|...+... ..+| ..+...
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v 646 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLV 646 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHH
Confidence 466666665554433322 22344455555532 22232222332222234568888898877666 3334 344556
Q ss_pred HHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 487 PLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 487 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
.|.+...+.|-...|-.++.+.+.+.-..+-++..++++|....+.+.|++.|+...+...
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC
Confidence 6777788888888999999999988877788999999999999999999999998876543
No 422
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=45.58 E-value=2.5e+02 Score=27.12 Aligned_cols=117 Identities=12% Similarity=0.063 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc------cCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHH
Q 007288 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH------AGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKE 468 (609)
Q Consensus 395 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 468 (609)
-.+++..++.+...++. |........|.+|-. .-+|.....+|+.+......|-+. .|.- -++.+..-++.
T Consensus 271 lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~-LNRA-VAla~~~Gp~a 347 (415)
T COG4941 271 LIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVT-LNRA-VALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEe-ehHH-HHHHHhhhHHh
Confidence 35788888888888764 888888777776643 237888888888887755444332 3322 23445555777
Q ss_pred HHHHHHhCCCCCCHhhHH----HHHHHHHhCCChHHHHHHHHHHhccCCC
Q 007288 469 AYELIKSMPFKPDESVWG----PLLGACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 469 A~~~~~~~~~~p~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
++.+.+.++-.|...-|. .=...+.+.|+.++|...|++++.+.++
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~ 397 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARN 397 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCC
Confidence 788887775454332222 2235688899999999999999888774
No 423
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=45.49 E-value=1.6e+02 Score=23.60 Aligned_cols=60 Identities=18% Similarity=0.009 Sum_probs=32.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHhc-------cCCCCcc----hHHHHHHHHHhcCChHHHHHHHHHHH
Q 007288 484 VWGPLLGACKEHRLPNLGKLAALRVLD-------LKPNMMG----TYIILSNIYAAEGKWEEFAKFRKIMR 543 (609)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~ 543 (609)
++..|-.++...|++++++...++++. +..+... ...+-+.++...|+.++|...|+..-
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 334444555556665555544444432 3333222 33345667778899999888887653
No 424
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=45.09 E-value=1.8e+02 Score=24.22 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=37.4
Q ss_pred ChhHHHHHHHHHHhCC--chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhcc
Q 007288 279 DLITWNTIIAGYEKSG--SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAA 329 (609)
Q Consensus 279 ~~~~~~~li~~~~~~~--~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 329 (609)
+...|..++.+..+.. .--+..+|.-|++.+.+++..-|..++.++.+...
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~ 130 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYF 130 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Confidence 4556778888886666 34566788888887788888888888888765533
No 425
>PRK13342 recombination factor protein RarA; Reviewed
Probab=44.59 E-value=3.5e+02 Score=27.38 Aligned_cols=44 Identities=16% Similarity=0.113 Sum_probs=27.5
Q ss_pred hHHHHHHHHHh---cCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 007288 181 SWTTLITGYAH---SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224 (609)
Q Consensus 181 ~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 224 (609)
.+..++.++.+ .++.+.|+..+..|.+.|..|....-..+..++
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34445555554 367888888888888877766655444444443
No 426
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=44.39 E-value=37 Score=30.52 Aligned_cols=56 Identities=23% Similarity=0.230 Sum_probs=36.9
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC
Q 007288 460 LGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM 515 (609)
Q Consensus 460 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 515 (609)
..+.++.+.|.+++.+. ...| ...+|-.+.....+.|+.+.|...+++.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34566666777777665 3334 35566666666777777777777777777777654
No 427
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=44.05 E-value=1.7e+02 Score=23.66 Aligned_cols=42 Identities=10% Similarity=0.217 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHH
Q 007288 398 EAIELFDEMVKSGVRPDR-IVFMAVLTACSHAGLVDEGLKYFK 439 (609)
Q Consensus 398 ~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~ 439 (609)
.+.++|..|..+|+--.. .-|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555554433322 234444444444555555555544
No 428
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=43.34 E-value=3.6e+02 Score=27.19 Aligned_cols=62 Identities=10% Similarity=-0.179 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 486 GPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 486 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
..|+.-|...|+..+|....+++---.-+....+..++.+..+.|+-..-+.+++..-+.|.
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 45566677777777777766654221112344566667777777765555555554444443
No 429
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=43.28 E-value=36 Score=27.67 Aligned_cols=33 Identities=21% Similarity=0.489 Sum_probs=24.2
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHh
Q 007288 88 TSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKAC 122 (609)
Q Consensus 88 ~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 122 (609)
...|.-..|..+|+.|.++|-+|| .|+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 344667788999999999998876 456666543
No 430
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=43.18 E-value=1.5e+02 Score=25.84 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=13.9
Q ss_pred HHHHhCCChHHHHHHHHHHhccCCCC
Q 007288 490 GACKEHRLPNLGKLAALRVLDLKPNM 515 (609)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~~~~~~p~~ 515 (609)
..|.+.|.+++|.+++++..+ +|++
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~-d~~~ 143 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS-DPES 143 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc-CCCc
Confidence 335566666666666665555 4433
No 431
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=42.95 E-value=40 Score=23.19 Aligned_cols=29 Identities=17% Similarity=0.124 Sum_probs=20.1
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 516 MGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
..-...++.+|.+.|++++|.++++.+.+
T Consensus 23 ~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 23 FLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33445577788888888888888877754
No 432
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=42.87 E-value=1.4e+02 Score=24.84 Aligned_cols=47 Identities=9% Similarity=0.127 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC
Q 007288 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228 (609)
Q Consensus 182 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 228 (609)
-..++..+.+.++.-.|.++|+++.+.+...+..|....+..+...|
T Consensus 23 R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 23 RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 34455555555555666666666666665555555555555554444
No 433
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=42.87 E-value=52 Score=31.06 Aligned_cols=39 Identities=21% Similarity=0.334 Sum_probs=27.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007288 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420 (609)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 420 (609)
-|+..|....+.||+++|+.++++..+.|+.--..+|..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 456777777777888888888888877776544445443
No 434
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=42.83 E-value=71 Score=29.69 Aligned_cols=58 Identities=21% Similarity=0.021 Sum_probs=51.1
Q ss_pred HHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 490 GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
.++.+.++++.|....++.+.++|.++.-..--+-+|.+.|-+.-|++-+....+.-+
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P 246 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCP 246 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCC
Confidence 6688999999999999999999999888888899999999999999999888766433
No 435
>PRK12798 chemotaxis protein; Reviewed
Probab=42.82 E-value=3.6e+02 Score=27.02 Aligned_cols=150 Identities=17% Similarity=0.234 Sum_probs=94.0
Q ss_pred cCCHHHHHHHHHhcCC----CCcchHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCCHH
Q 007288 362 CGNISDSQKIFSEMSD----RDLVTWTSMMIG-YGAHGHGKEAIELFDEMVKSGVRPDRI----VFMAVLTACSHAGLVD 432 (609)
Q Consensus 362 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~ 432 (609)
.|+.++|.+.|..+.. +....|-.|+.+ .....+..+|+++|+...- .-|... ....-+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6888888888887763 344566666655 3455788889998888765 345443 3444445567788888
Q ss_pred HHHHHHHHh-hhcCCCCChhHHH-HHHHHHhhc---CCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHH
Q 007288 433 EGLKYFKSM-NDYNVNPNKEIYG-CVVDLLGRA---GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALR 507 (609)
Q Consensus 433 ~a~~~~~~~-~~~~~~~~~~~~~-~l~~~~~~~---g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 507 (609)
++..+-... ......|=..-|. .+..++.+. -..+.-..++..|.-.--...|..+...-...|+.+.|...-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 877665555 4433333332222 233333333 33455556666664222355777777888889999999888888
Q ss_pred HhccCC
Q 007288 508 VLDLKP 513 (609)
Q Consensus 508 ~~~~~p 513 (609)
+..+..
T Consensus 283 A~~L~~ 288 (421)
T PRK12798 283 ALKLAD 288 (421)
T ss_pred HHHhcc
Confidence 877653
No 436
>PHA02875 ankyrin repeat protein; Provisional
Probab=42.80 E-value=3.7e+02 Score=27.09 Aligned_cols=14 Identities=36% Similarity=0.325 Sum_probs=6.7
Q ss_pred ccCChhHHHHhhcc
Q 007288 58 DEGLIEEARTLFDE 71 (609)
Q Consensus 58 ~~g~~~~A~~~~~~ 71 (609)
+.|+.+-+..+++.
T Consensus 11 ~~g~~~iv~~Ll~~ 24 (413)
T PHA02875 11 LFGELDIARRLLDI 24 (413)
T ss_pred HhCCHHHHHHHHHC
Confidence 34555555554443
No 437
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=42.33 E-value=1.2e+02 Score=24.39 Aligned_cols=37 Identities=16% Similarity=0.073 Sum_probs=27.9
Q ss_pred CCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccC
Q 007288 476 MPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLK 512 (609)
Q Consensus 476 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 512 (609)
+.+-|++.....-+++|++-+++..|.++++-+...-
T Consensus 78 yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~ 114 (149)
T KOG4077|consen 78 YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC 114 (149)
T ss_pred cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 3567788888888888888888888888887765433
No 438
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=41.78 E-value=3.2e+02 Score=26.09 Aligned_cols=42 Identities=10% Similarity=0.048 Sum_probs=19.7
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 007288 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276 (609)
Q Consensus 235 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 276 (609)
++++.+.+.++.|.-..+.-+.-.+.+.=.+.+.+.+++.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 444444444444444444444444444444444444444443
No 439
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.66 E-value=4.6e+02 Score=29.12 Aligned_cols=131 Identities=15% Similarity=0.134 Sum_probs=87.4
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 007288 357 DMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436 (609)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 436 (609)
.....+|+++.|++.-..+- +..+|..|...-...|+.+-|+..|++... |..|--.|.-.|+.++-.+
T Consensus 651 ~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHH
Confidence 34567899999888776665 456889999999999999999999887654 2333344667788887766
Q ss_pred HHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhc
Q 007288 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD 510 (609)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 510 (609)
+.+....++ |.... +..+ .-.|+.++=..+++..+..|-. | -....+|.-++|.++.++.-.
T Consensus 720 m~~iae~r~---D~~~~--~qna-lYl~dv~ervkIl~n~g~~~la--y----lta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 720 MMKIAEIRN---DATGQ--FQNA-LYLGDVKERVKILENGGQLPLA--Y----LTAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHhhh---hhHHH--HHHH-HHhccHHHHHHHHHhcCcccHH--H----HHHhhcCcHHHHHHHHHhhcc
Confidence 666553322 32221 1111 1258899999999888755421 1 223457777888888887755
No 440
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=39.89 E-value=2e+02 Score=28.79 Aligned_cols=52 Identities=12% Similarity=0.045 Sum_probs=38.7
Q ss_pred HHhccCCHHHHHHHHHHhhhcCCCCChh--HHHHHHHHHh--hcCCHHHHHHHHHhC
Q 007288 424 ACSHAGLVDEGLKYFKSMNDYNVNPNKE--IYGCVVDLLG--RAGRVKEAYELIKSM 476 (609)
Q Consensus 424 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~ 476 (609)
.+...+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++..
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~ 195 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKL 195 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 445789999999999999765 555554 5556666665 455788999999876
No 441
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=39.61 E-value=94 Score=23.48 Aligned_cols=22 Identities=9% Similarity=-0.088 Sum_probs=16.3
Q ss_pred HHHHhCCChHHHHHHHHHHhcc
Q 007288 490 GACKEHRLPNLGKLAALRVLDL 511 (609)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~~~~~ 511 (609)
......|+.++|...+++++++
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHHH
Confidence 4566778888888888877764
No 442
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=39.48 E-value=1.6e+02 Score=21.91 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=29.3
Q ss_pred HHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007288 436 KYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476 (609)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 476 (609)
++|+-....|+..|..+|..+++.+.-.=.++...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 66666666777777777777777776666666667777666
No 443
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=39.39 E-value=3.8e+02 Score=29.06 Aligned_cols=49 Identities=24% Similarity=0.228 Sum_probs=31.9
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCc
Q 007288 458 DLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMM 516 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 516 (609)
..+++.|..+...++|+-. ..+.+-.-.+++.+|.+..+.+.+++|+.-
T Consensus 352 ~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 352 SLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred HHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHHHhccCCcee
Confidence 3455666666666655432 223444556788888888899999888543
No 444
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=39.38 E-value=92 Score=22.87 Aligned_cols=52 Identities=10% Similarity=0.076 Sum_probs=22.4
Q ss_pred HHHccCChhHHHHhhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCc
Q 007288 55 SYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNA 112 (609)
Q Consensus 55 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 112 (609)
..++.|+++-...+++.-...+. -+..+...+..|+ .++++.+.+.|..++.
T Consensus 3 ~A~~~~~~~~~~~ll~~~~~~~~--~~~~l~~A~~~~~----~~~~~~Ll~~g~~~~~ 54 (89)
T PF12796_consen 3 IAAQNGNLEILKFLLEKGADINL--GNTALHYAAENGN----LEIVKLLLENGADINS 54 (89)
T ss_dssp HHHHTTTHHHHHHHHHTTSTTTS--SSBHHHHHHHTTT----HHHHHHHHHTTTCTT-
T ss_pred HHHHcCCHHHHHHHHHCcCCCCC--CCCHHHHHHHcCC----HHHHHHHHHhcccccc
Confidence 34455555555555553322222 1123333334444 3444444455555544
No 445
>PHA02875 ankyrin repeat protein; Provisional
Probab=39.35 E-value=4e+02 Score=26.84 Aligned_cols=193 Identities=11% Similarity=-0.018 Sum_probs=99.5
Q ss_pred HHHHHhHHCCCCCCHHh--HHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCCHHHHHHHHHhc
Q 007288 300 NMFSKMKSERFSPNCFT--FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA--LANALIDMYAKCGNISDSQKIFSEM 375 (609)
Q Consensus 300 ~~~~~m~~~~~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~ 375 (609)
++++.+.+.|..|+... -.+.+..++..|+.+-+ +.+.+.|..++.. .....+...++.|+.+.+..+++.-
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~ 91 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLG 91 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcC
Confidence 34455556787776532 23445555667776644 4445566554432 1223455667889999888888754
Q ss_pred CCC----CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC
Q 007288 376 SDR----DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIV--FMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN 449 (609)
Q Consensus 376 ~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 449 (609)
... +..-.+. +...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+-+..++ +.|..++
T Consensus 92 ~~~~~~~~~~g~tp-L~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll----~~g~~~~ 162 (413)
T PHA02875 92 KFADDVFYKDGMTP-LHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI----DHKACLD 162 (413)
T ss_pred CcccccccCCCCCH-HHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hcCCCCC
Confidence 421 1111222 3334455665 45556666777765431 123344455677765544444 3444333
Q ss_pred h---hHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHh---hHHHHHHHHHhCCChHHHHHHHHH
Q 007288 450 K---EIYGCVVDLLGRAGRVKEAYELIKSMPFKPDES---VWGPLLGACKEHRLPNLGKLAALR 507 (609)
Q Consensus 450 ~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~ 507 (609)
. .-.+ -+...+..|+.+-+.-+++. |..|+.. ...+++......|+.+-+..+++.
T Consensus 163 ~~d~~g~T-pL~~A~~~g~~eiv~~Ll~~-ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~ 224 (413)
T PHA02875 163 IEDCCGCT-PLIIAMAKGDIAICKMLLDS-GANIDYFGKNGCVAALCYAIENNKIDIVRLFIKR 224 (413)
T ss_pred CCCCCCCC-HHHHHHHcCCHHHHHHHHhC-CCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHC
Confidence 2 2222 23334456776655555443 4344332 123455545566777655555443
No 446
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=38.30 E-value=1.2e+02 Score=25.35 Aligned_cols=33 Identities=9% Similarity=0.004 Sum_probs=15.3
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcc
Q 007288 81 TVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAF 113 (609)
Q Consensus 81 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 113 (609)
..++..+...+++-.|.++++.+.+.+...+..
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~isla 56 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLA 56 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHh
Confidence 344444444444455555555555444433333
No 447
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=38.03 E-value=1.1e+02 Score=26.26 Aligned_cols=46 Identities=9% Similarity=-0.069 Sum_probs=20.9
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCC
Q 007288 81 TVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMK 126 (609)
Q Consensus 81 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 126 (609)
..++..+...+++-.|.++++.+.+.+..++..|..-.|..+...|
T Consensus 29 ~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 29 LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3444444444444455555555555544444444333333333333
No 448
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=38.02 E-value=1.4e+02 Score=30.98 Aligned_cols=58 Identities=16% Similarity=0.098 Sum_probs=35.9
Q ss_pred HhHHHHHHHccCChhHHHHhhccCCCC--Cc---ccHHHHHHHHHcCCChhHHHHHHHHHHHC
Q 007288 49 ATNLIKSYFDEGLIEEARTLFDEMPER--DV---VSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106 (609)
Q Consensus 49 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 106 (609)
...|+.-|.+.+++++|+.++..|.-. .. .+.+.+.+.+.+..--.+....++.+...
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 346788899999999999999888632 11 23344555555554344445555555543
No 449
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=38.02 E-value=78 Score=31.34 Aligned_cols=22 Identities=14% Similarity=-0.043 Sum_probs=13.1
Q ss_pred HHHHHHHhhcCCHHHHHHHHHh
Q 007288 454 GCVVDLLGRAGRVKEAYELIKS 475 (609)
Q Consensus 454 ~~l~~~~~~~g~~~~A~~~~~~ 475 (609)
..|+-+|.+.++++-|+.-..+
T Consensus 232 tklv~CYL~~rkpdlALnh~hr 253 (569)
T PF15015_consen 232 TKLVTCYLRMRKPDLALNHSHR 253 (569)
T ss_pred HHHHHhhhhcCCCchHHHHHhh
Confidence 3455666677777766654433
No 450
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.65 E-value=51 Score=35.82 Aligned_cols=96 Identities=18% Similarity=0.267 Sum_probs=60.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 007288 393 HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472 (609)
Q Consensus 393 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 472 (609)
.+++++.+.+.+...--| .++|..+.+.|..+-|+.+.+.=. + -......+|+++.|++.
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~---------t---RF~LaLe~gnle~ale~ 665 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDER---------T---RFELALECGNLEVALEA 665 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcc---------h---heeeehhcCCHHHHHHH
Confidence 355666655444322212 234555566777766666554321 1 11334567888888888
Q ss_pred HHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhcc
Q 007288 473 IKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDL 511 (609)
Q Consensus 473 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 511 (609)
-.++. |..+|..|......+|+.+-|+-.|++....
T Consensus 666 akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~knf 701 (1202)
T KOG0292|consen 666 AKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKNF 701 (1202)
T ss_pred HHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 87765 6678888888888888888888888876553
No 451
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=37.46 E-value=3.6e+02 Score=25.42 Aligned_cols=87 Identities=11% Similarity=0.108 Sum_probs=53.2
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHh----
Q 007288 186 ITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR---- 261 (609)
Q Consensus 186 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~---- 261 (609)
|.+++..+++.+++...-+--+.--+.-.......|-.|.+.+.+..+.++-..-.+..-.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 6778888888887766555433211222333444455577788888777777766654323334446666666554
Q ss_pred -cCCHHHHHHHH
Q 007288 262 -FDCLSDANQYF 272 (609)
Q Consensus 262 -~g~~~~A~~~~ 272 (609)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 48888888776
No 452
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=37.29 E-value=4.5e+02 Score=26.57 Aligned_cols=99 Identities=6% Similarity=-0.049 Sum_probs=43.5
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCC
Q 007288 84 IAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163 (609)
Q Consensus 84 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 163 (609)
|+++...| ..+++.+-...... ++...+.....++....+......+.+.+ -.++..+......++...+ .
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L----~d~~~~vr~aaa~ALg~i~-~ 115 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVL----QAGPEGLCAGIQAALGWLG-G 115 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHh----cCCCHHHHHHHHHHHhcCC-c
Confidence 56666666 45566555555322 22233333333333222222122222222 2334445566666666655 4
Q ss_pred HHHHHHHHccCCCCChhhHHHHHHHHHh
Q 007288 164 MDNARLVFNDMKWKNDVSWTTLITGYAH 191 (609)
Q Consensus 164 ~~~A~~~~~~~~~~~~~~~~~li~~~~~ 191 (609)
......+...+...+.......+.++..
T Consensus 116 ~~a~~~L~~~L~~~~p~vR~aal~al~~ 143 (410)
T TIGR02270 116 RQAEPWLEPLLAASEPPGRAIGLAALGA 143 (410)
T ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 4444444444444444444444444443
No 453
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.25 E-value=4.4e+02 Score=26.35 Aligned_cols=62 Identities=8% Similarity=-0.117 Sum_probs=35.5
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHC--CCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHH
Q 007288 181 SWTTLITGYAHSGNGYGGLGVFKEMLLE--GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIK 242 (609)
Q Consensus 181 ~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 242 (609)
.+..+...|...|+++.|++.|.+.++- .-+-....|..+|..-.-.|+|.....+..+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 4666777777777888887777775442 1111223344455555556666665555555443
No 454
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=37.06 E-value=4.3e+02 Score=26.28 Aligned_cols=53 Identities=11% Similarity=-0.011 Sum_probs=30.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHh--ccCCHHHHHHHHHH
Q 007288 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL----TACS--HAGLVDEGLKYFKS 440 (609)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll----~~~~--~~~~~~~a~~~~~~ 440 (609)
..+.+.+++..|.++|+++......|+...+...+ .+|. ..-++++|.+.++.
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34566778888888888888765555444333222 3322 23455666666654
No 455
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=36.71 E-value=3.9e+02 Score=28.47 Aligned_cols=93 Identities=13% Similarity=0.061 Sum_probs=35.7
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHH
Q 007288 179 DVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDM 258 (609)
Q Consensus 179 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 258 (609)
...|..-+..+...++.. ....+.+..+-.-.+...-.-++..|.+.|-.+.+..+.+.+-..-+ ...-|..-+..
T Consensus 372 ~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~ 447 (566)
T PF07575_consen 372 HSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSW 447 (566)
T ss_dssp TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred cchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHH
Confidence 334555554444433222 44444444443333445555666666666666666666655443321 12334555555
Q ss_pred HHhcCCHHHHHHHHHhc
Q 007288 259 YCRFDCLSDANQYFDEM 275 (609)
Q Consensus 259 ~~~~g~~~~A~~~~~~~ 275 (609)
+.++|+......+-+.+
T Consensus 448 ~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 448 FIRAGDYSLVTRIADRL 464 (566)
T ss_dssp HH---------------
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 66666666555554443
No 456
>PF13934 ELYS: Nuclear pore complex assembly
Probab=36.47 E-value=3.3e+02 Score=24.77 Aligned_cols=53 Identities=17% Similarity=0.213 Sum_probs=24.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007288 386 MMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441 (609)
Q Consensus 386 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 441 (609)
++.++...|+...|+.+++.+.-. -.+......++.. ...+.+.+|..+-+..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~-La~~~v~EAf~~~R~~ 166 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFVA-LANGLVTEAFSFQRSY 166 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH-HHcCCHHHHHHHHHhC
Confidence 555555566666666655543221 1111122222222 3445666666555544
No 457
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=36.06 E-value=3.9e+02 Score=25.47 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHhCC-chH
Q 007288 281 ITWNTIIAGYEKSG-SSE 297 (609)
Q Consensus 281 ~~~~~li~~~~~~~-~~~ 297 (609)
-.|..|+.+++..| .+-
T Consensus 322 K~yaPLL~af~s~g~sEL 339 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSEL 339 (412)
T ss_pred HhhhHHHHHHhcCChHHH
Confidence 36777888888777 443
No 458
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=35.71 E-value=1.7e+02 Score=25.15 Aligned_cols=48 Identities=8% Similarity=0.074 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCc
Q 007288 183 TTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230 (609)
Q Consensus 183 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 230 (609)
..++..+...++.-.|.++++.+.+.+..++..|....|..+...|-+
T Consensus 29 ~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 29 LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 344444444455556666666666666555666655555555555533
No 459
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=34.48 E-value=7.5e+02 Score=28.27 Aligned_cols=254 Identities=11% Similarity=-0.032 Sum_probs=142.7
Q ss_pred HHHccCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCC
Q 007288 169 LVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSN 248 (609)
Q Consensus 169 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~ 248 (609)
.+.+.+..+|...-...+..+.+.+.. ++...+..+... +|...-...+.++...+........+..+.. .+|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCC
Confidence 444455567777777777777776653 354555555432 2333333444444443322112223333333 256
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCchHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhc
Q 007288 249 LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLA 328 (609)
Q Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 328 (609)
..+-...+.++...+.-+ ...+...+..+|...-...+.++.+.+..++ +..... .++...-.....++...+
T Consensus 698 ~~VR~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~---l~~~l~---D~~~~VR~~aa~aL~~~~ 770 (897)
T PRK13800 698 PVVRAAALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES---VAGAAT---DENREVRIAVAKGLATLG 770 (897)
T ss_pred HHHHHHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH---HHHHhc---CCCHHHHHHHHHHHHHhc
Confidence 666666667666543211 2345556667777666667777776662222 122222 345555566666666666
Q ss_pred cHHH-HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH-HHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 007288 329 ALSC-GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ-KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406 (609)
Q Consensus 329 ~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 406 (609)
..+. +...+..+.+ .++..+-...+.++.+.|..+.+. .+...+.+++...-...+.++...+. .++...+..+
T Consensus 771 ~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~ 846 (897)
T PRK13800 771 AGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEA 846 (897)
T ss_pred cccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHH
Confidence 5433 2333434333 456777788888888888766553 34455556676666667777777765 4566666666
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 007288 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND 443 (609)
Q Consensus 407 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 443 (609)
.+ .|+...-...+.++.+.+.-..+...+..+.+
T Consensus 847 L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 847 LT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred hc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 64 56666666777777775434556666666644
No 460
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=34.17 E-value=2.7e+02 Score=22.98 Aligned_cols=71 Identities=10% Similarity=0.085 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHHHhccC---CHHHHHHHHHHhhh-cCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH
Q 007288 412 RPDRIVFMAVLTACSHAG---LVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDE 482 (609)
Q Consensus 412 ~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 482 (609)
.++..+--.+..++.+.. +..+.+.+++.+.+ ....-.......|.-++.|.+++++++++++.+ ..+||.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 455555555666666655 45667788888854 222222333445666788889999988888776 444543
No 461
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=34.05 E-value=3.8e+02 Score=28.11 Aligned_cols=95 Identities=16% Similarity=0.124 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 007288 449 NKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA 528 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 528 (609)
+...-..|-+-+....++.-|.++..+.++. ....|.+..-+|.+.+++..|.+-|+++.++.-.+..-...=+.-...
T Consensus 555 d~~asecLRdqLie~ErYqlaV~mckKc~iD-~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin~ie 633 (1141)
T KOG1811|consen 555 DPAASECLRDQLIEAERYQLAVEMCKKCGID-TFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIINLIE 633 (1141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-cccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHHhhc
Q ss_pred cC---ChHHHHHHHHHHHh
Q 007288 529 EG---KWEEFAKFRKIMRG 544 (609)
Q Consensus 529 ~g---~~~~A~~~~~~m~~ 544 (609)
.| +.....++++.+.+
T Consensus 634 Ggpp~dVq~Vrem~dhlak 652 (1141)
T KOG1811|consen 634 GGPPRDVQDVREMLDHLAK 652 (1141)
T ss_pred CCCcchHHHHHHHHHHhcc
No 462
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=33.88 E-value=77 Score=21.80 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=15.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 007288 385 SMMIGYGAHGHGKEAIELFDEMVK 408 (609)
Q Consensus 385 ~li~~~~~~g~~~~A~~~~~~m~~ 408 (609)
.+|.+|.+.|++++|.+.++++.+
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456677777777777777766654
No 463
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=33.82 E-value=2.5e+02 Score=22.53 Aligned_cols=61 Identities=11% Similarity=0.025 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHhhcCCHHHHH-------HHHHhCC-CCCC-HhhHHHHH----HHHHhCCChHHHHHHHHHHhc
Q 007288 450 KEIYGCVVDLLGRAGRVKEAY-------ELIKSMP-FKPD-ESVWGPLL----GACKEHRLPNLGKLAALRVLD 510 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~-------~~~~~~~-~~p~-~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~ 510 (609)
...+..|..++...|++++++ .+|++-+ +..| ...|-..+ .++...|+.++|...|+++-+
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 334455666666667666543 3333332 2223 33444443 346677788888777776544
No 464
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=33.78 E-value=2e+02 Score=21.53 Aligned_cols=53 Identities=13% Similarity=-0.061 Sum_probs=32.2
Q ss_pred CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCC--CCcchHHHHHHHHHhcCChH
Q 007288 481 DESVWGPLLGACKEHRLPNLGKLAALRVLDLKP--NMMGTYIILSNIYAAEGKWE 533 (609)
Q Consensus 481 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~ 533 (609)
|......+...+...|+++.|.+.+-.+++.+| ++...-..++.++...|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 345555666777777888888777777777665 33555666777776666643
No 465
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=33.62 E-value=96 Score=24.46 Aligned_cols=47 Identities=9% Similarity=0.049 Sum_probs=32.2
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCCh
Q 007288 82 VMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSL 128 (609)
Q Consensus 82 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 128 (609)
.++..+...+.+-.|.++++.+.+.+..++..|....|..+...|-+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 45666666667778888888888877666777666566666555543
No 466
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=33.56 E-value=5.2e+02 Score=26.99 Aligned_cols=56 Identities=13% Similarity=0.116 Sum_probs=38.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC--Ch---hHHHHHHHHHHhCC-chHHHHHHHHhHHC
Q 007288 253 NSILDMYCRFDCLSDANQYFDEMTEK--DL---ITWNTIIAGYEKSG-SSECLNMFSKMKSE 308 (609)
Q Consensus 253 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~---~~~~~li~~~~~~~-~~~a~~~~~~m~~~ 308 (609)
..++.-|.+.+++++|..++..|.-. .. .+.+.+.+.+.+.. ..+....++.+...
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 45777899999999999999998742 22 23445556666666 56666666666554
No 467
>PRK13342 recombination factor protein RarA; Reviewed
Probab=33.38 E-value=5.3e+02 Score=26.14 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=30.2
Q ss_pred hHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 007288 382 TWTSMMIGYGA---HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHA 428 (609)
Q Consensus 382 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 428 (609)
.+..++.++.+ .++.+.|+..+..|.+.|..|....-..++.++...
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 34445555544 478888888888888888777655555554444433
No 468
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=33.22 E-value=3.7e+02 Score=24.37 Aligned_cols=91 Identities=24% Similarity=0.408 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHH
Q 007288 383 WTSMMIGYGAHGHGKEAIELFDEMVKSGVRP-----DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVV 457 (609)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 457 (609)
+|.|+.-|.....+.+|-+.|.. ..|+.| +...-..-|......|+.++|++....+.-.-+..|...+-.|.
T Consensus 29 ~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq 106 (228)
T KOG2659|consen 29 LNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHLQ 106 (228)
T ss_pred HHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHHH
Q ss_pred HH----HhhcCCHHHHHHHHHh
Q 007288 458 DL----LGRAGRVKEAYELIKS 475 (609)
Q Consensus 458 ~~----~~~~g~~~~A~~~~~~ 475 (609)
.. +.|.|..++|+++.+.
T Consensus 107 ~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 107 QLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHhhhHHHHHHHHHH
No 469
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=33.15 E-value=94 Score=31.39 Aligned_cols=58 Identities=5% Similarity=-0.055 Sum_probs=50.9
Q ss_pred HHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 490 GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
.-....+.++.|...+.++++++|+....|..-+.++.+.+++..|+.=+.+..+..+
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP 69 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDP 69 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCc
Confidence 3456678899999999999999999999999999999999999999998888877553
No 470
>PF13934 ELYS: Nuclear pore complex assembly
Probab=33.13 E-value=3.8e+02 Score=24.42 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=9.9
Q ss_pred HHHHHhccCCHHHHHHHHHH
Q 007288 421 VLTACSHAGLVDEGLKYFKS 440 (609)
Q Consensus 421 ll~~~~~~~~~~~a~~~~~~ 440 (609)
++.++...|+.+.|..+++.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHCCChhHHHHHHHh
Confidence 44444445555555555544
No 471
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=32.99 E-value=1.3e+02 Score=23.72 Aligned_cols=48 Identities=8% Similarity=0.140 Sum_probs=35.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCch
Q 007288 184 TLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231 (609)
Q Consensus 184 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 231 (609)
.++..+...+..-.|.++++.+.+.+...+..|....|..+...|-+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 355666666677788888888888877778888777777777766543
No 472
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=32.78 E-value=5.1e+02 Score=25.81 Aligned_cols=51 Identities=8% Similarity=-0.001 Sum_probs=35.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCC----c----chHHHHHHHHH--hcCCHHHHHHHHHH
Q 007288 355 LIDMYAKCGNISDSQKIFSEMSDRD----L----VTWTSMMIGYG--AHGHGKEAIELFDE 405 (609)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~~~~~~----~----~~~~~li~~~~--~~g~~~~A~~~~~~ 405 (609)
.+..+.+.+++..|.++|+++.+.. . ..|..+..+|. ..-++++|.+.++.
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4456678899999999999998542 1 23444555553 45678889888876
No 473
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=32.38 E-value=2.5e+02 Score=24.52 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=15.1
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHhhHH
Q 007288 458 DLLGRAGRVKEAYELIKSMPFKPDESVWG 486 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 486 (609)
-.|.+.|.+++|.+++++.-..|+.....
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r 147 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFSDPESQKLR 147 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhcCCCchhHH
Confidence 44556666666666666652244443333
No 474
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=32.33 E-value=2.2e+02 Score=30.23 Aligned_cols=113 Identities=15% Similarity=0.174 Sum_probs=73.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC------CcchHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCCCHHHHHHH
Q 007288 354 ALIDMYAKCGNISDSQKIFSEMSDR------DLVTWTSMMIGYGAHGHGK------EAIELFDEMVKSGVRPDRIVFMAV 421 (609)
Q Consensus 354 ~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~p~~~~~~~l 421 (609)
+|..+|...|++-.+.++++..... -...+|..|..+.+.|.++ .|.++++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7999999999999999999988632 3457888899999999764 3444444433 66788899988
Q ss_pred HHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHh--hcCCHHHHHHHHHhC
Q 007288 422 LTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG--RAGRVKEAYELIKSM 476 (609)
Q Consensus 422 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~ 476 (609)
+.+-...-.-.-..-++.++.... .|.+++.+. ..=.+++..-+++++
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~~s-------~ngv~di~~~~~v~s~~ev~limd~l 159 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIHRS-------ANGVIDILMHESVFSPEEVKLIMDQL 159 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHHhh-------hhhHHHHHhhhccCCHHHHHHHHHhc
Confidence 877655433333444455543322 122333332 333567777777776
No 475
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=32.29 E-value=1.7e+02 Score=20.36 Aligned_cols=50 Identities=12% Similarity=-0.048 Sum_probs=28.4
Q ss_pred CCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 007288 311 SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK 361 (609)
Q Consensus 311 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 361 (609)
.|+...++.++..+++....+.+...+.+..+.|. .+..+|..-++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 34555566666666666666777777776666663 344444444444443
No 476
>TIGR02328 conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown.
Probab=32.19 E-value=55 Score=25.49 Aligned_cols=26 Identities=12% Similarity=0.213 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHcCcccCccccc
Q 007288 577 YVYGVLEMLIRHMNETAYEPDIDCLI 602 (609)
Q Consensus 577 ~~~~~~~~l~~~m~~~g~~pd~~~~~ 602 (609)
..+..=..++++|...||+||..++-
T Consensus 49 ~L~~yH~lv~~EM~~RGY~~~~~W~d 74 (120)
T TIGR02328 49 KLFAYHLLVMEEMATRGYHVSKQWLD 74 (120)
T ss_pred HHHHHHHHHHHHHHHcCCCCChhhcC
Confidence 34444567899999999999998763
No 477
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=31.39 E-value=4.1e+02 Score=24.27 Aligned_cols=107 Identities=12% Similarity=0.065 Sum_probs=55.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC-CCHH--HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCC
Q 007288 389 GYGAHGHGKEAIELFDEMVKSGVR-PDRI--VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465 (609)
Q Consensus 389 ~~~~~g~~~~A~~~~~~m~~~g~~-p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 465 (609)
-+...|+++.|+++.+.+++.|.. |+.+ ++-+++. ++....-....+.|-+.++.....+...-....-
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~va--------eev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dm 163 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVA--------EEVANAALKAASAGESVEPYFLRVFLDLTTEWDM 163 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHH--------HHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCC
Confidence 345779999999999999998853 4332 2222221 2222223333445544454443333222222211
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHH---------hCCChHHHHHHHHHHhccCCC
Q 007288 466 VKEAYELIKSMPFKPDESVWGPLLGACK---------EHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 466 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~p~ 514 (609)
+++. ...-|..+...+. ..++...|...++++.+++|.
T Consensus 164 pd~v-----------rAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 164 PDEV-----------RAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred ChHH-----------HHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 2211 2223333333342 345677888999999888883
No 478
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=30.77 E-value=6.9e+02 Score=26.67 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=23.8
Q ss_pred CCCChhHHhHHHHHHHccCChhHHHHhhccCCC
Q 007288 42 PKGPSILATNLIKSYFDEGLIEEARTLFDEMPE 74 (609)
Q Consensus 42 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 74 (609)
.+.++.-|+ .|..+.-+|+++.|.+++.....
T Consensus 145 ~~~~p~FW~-~v~~lvlrG~~~~a~~lL~~~s~ 176 (566)
T PF07575_consen 145 YEHDPDFWD-YVQRLVLRGLFDQARQLLRLHSS 176 (566)
T ss_dssp CSGSHHHHH-HHHHHHHTT-HHHHHHHH-TTTT
T ss_pred CccchhHHH-HHHHHHHcCCHHHHHHHHHhccc
Confidence 556678887 68888889999999999966543
No 479
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=30.76 E-value=4.9e+02 Score=24.95 Aligned_cols=71 Identities=4% Similarity=0.045 Sum_probs=42.2
Q ss_pred HHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHh----------cCChhhHHHH
Q 007288 132 ALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAH----------SGNGYGGLGV 201 (609)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~----------~g~~~~a~~~ 201 (609)
.++++.+...++.|.-+.+.-+.-.+.+.= .+.+.+.+++.+..... -|..|+..||. .|++...+++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF-~lpDvi~lWDsl~sD~~-rfd~Ll~iCcsmlil~Re~il~~DF~~nmkL 340 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEF-PLPDVIRLWDSLLSDPQ-RFDFLLYICCSMLILVRERILEGDFTVNMKL 340 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccC-CchhHHHHHHHHhcChh-hhHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 356666666677777766666666666655 66777777776653221 14444444442 4677666666
Q ss_pred HHH
Q 007288 202 FKE 204 (609)
Q Consensus 202 ~~~ 204 (609)
++.
T Consensus 341 LQ~ 343 (370)
T KOG4567|consen 341 LQN 343 (370)
T ss_pred Hhc
Confidence 543
No 480
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=30.63 E-value=3.9e+02 Score=23.76 Aligned_cols=35 Identities=14% Similarity=0.083 Sum_probs=25.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007288 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI 416 (609)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 416 (609)
...+.++..+...|+++.|-++|.-++... ..|..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR 76 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIR 76 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChH
Confidence 456677888888899999999988888753 34443
No 481
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=30.60 E-value=1.1e+02 Score=24.29 Aligned_cols=47 Identities=6% Similarity=0.097 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 007288 183 TTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229 (609)
Q Consensus 183 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 229 (609)
..++..+...+..-.|.++++.|...|...+..|....+..+...|-
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 35666667777788888888888888877777776666666666553
No 482
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=29.74 E-value=1.3e+02 Score=17.98 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=9.7
Q ss_pred HHHHHHHHhcCChHHHHHH
Q 007288 520 IILSNIYAAEGKWEEFAKF 538 (609)
Q Consensus 520 ~~l~~~~~~~g~~~~A~~~ 538 (609)
..++-.+...|++++|+.+
T Consensus 5 y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3445555555555555555
No 483
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=29.35 E-value=5.3e+02 Score=24.98 Aligned_cols=115 Identities=10% Similarity=0.087 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhh---cCCHHHHHHH
Q 007288 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR---AGRVKEAYEL 472 (609)
Q Consensus 396 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~ 472 (609)
.+.-+.++++.++.+ .-+......++..+.+..+.++..+.|+++.... +-+...|...++.... .-.++....+
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 567788999988873 3455577788888899889999999999996654 2367788887776654 2346666666
Q ss_pred HHhC---------CC---C-C----CHh---hHHHHHHHHHhCCChHHHHHHHHHHhccC
Q 007288 473 IKSM---------PF---K-P----DES---VWGPLLGACKEHRLPNLGKLAALRVLDLK 512 (609)
Q Consensus 473 ~~~~---------~~---~-p----~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 512 (609)
|.+. +. . + +.. .+..+...+.+.|-.+.|..+++-+++++
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 6554 11 0 1 111 22222244678899999999999998854
No 484
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=28.78 E-value=1.2e+02 Score=32.43 Aligned_cols=98 Identities=17% Similarity=0.243 Sum_probs=49.2
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----------HHHHHHHHHhccCCHHHHHHHHHHhhh--cCCCC
Q 007288 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI----------VFMAVLTACSHAGLVDEGLKYFKSMND--YNVNP 448 (609)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~ 448 (609)
.+...++-.|....+++..+++.+.+... ||.. .|.-.+.-=-+-|+-++|+...-.+.+ -.+.|
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 34556666777777788888777777752 3221 122222222334666777776666622 23344
Q ss_pred ChhH-----HHH--HHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 007288 449 NKEI-----YGC--VVDLLGRAGRVKEAYELIKSM-PFKPD 481 (609)
Q Consensus 449 ~~~~-----~~~--l~~~~~~~g~~~~A~~~~~~~-~~~p~ 481 (609)
|... |.- +-..|..++..+.|.+.|++. ...|.
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~ 319 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPL 319 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCch
Confidence 4322 111 112233344455566666555 44443
No 485
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=28.71 E-value=5e+02 Score=24.47 Aligned_cols=115 Identities=10% Similarity=-0.088 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcC-------CHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----CCCh
Q 007288 430 LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG-------RVKEAYELIKSMPFKPDESVWGPLLGACKE----HRLP 498 (609)
Q Consensus 430 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~ 498 (609)
+..+|..++++..+.|..+.......+...|..-. +...|...+.++-..-+......|...|.. ..+.
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~ 207 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDL 207 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCH
Confidence 55556666665555553322111222333332221 122455555554211133333333333322 3366
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhcC---------------ChHHHHHHHHHHHhCCC
Q 007288 499 NLGKLAALRVLDLKPNMMGTYIILSNIYAAEG---------------KWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 499 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~m~~~~~ 547 (609)
++|...|.++-+.+. ......+. .+...| +...|...+......+.
T Consensus 208 ~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 208 KKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred HHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 677777777766555 33444444 444444 66677777777666554
No 486
>PRK12798 chemotaxis protein; Reviewed
Probab=28.43 E-value=6.2e+02 Score=25.46 Aligned_cols=185 Identities=12% Similarity=0.074 Sum_probs=117.7
Q ss_pred HHhcCCHHHHHHHHHhcCCCCcchHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHHH
Q 007288 359 YAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY--GAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTA-CSHAGLVDEGL 435 (609)
Q Consensus 359 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~a~ 435 (609)
....|+.+-...++..-..++.. +.++.+. .-.|+..+|.+.+..+...-..+....|..|+.+ .....+...|+
T Consensus 91 ~lSGGnP~vlr~L~~~d~~~~~d--~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al 168 (421)
T PRK12798 91 LLSGGNPATLRKLLARDKLGNFD--QRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATAL 168 (421)
T ss_pred HhcCCCHHHHHHHHHcCCCChhh--HHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHH
Confidence 34567777777766665544332 2233322 1358999999999998877677777778877765 45567999999
Q ss_pred HHHHHhh--hcCCCCChhHHHHHHHHHhhcCCHHHHHHH----HHhCCCCCCHhhHH-HHHHHHHhCCChHHHHHHHHHH
Q 007288 436 KYFKSMN--DYNVNPNKEIYGCVVDLLGRAGRVKEAYEL----IKSMPFKPDESVWG-PLLGACKEHRLPNLGKLAALRV 508 (609)
Q Consensus 436 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~----~~~~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~ 508 (609)
.+|+... .-|.-........-+......|+.+++..+ +++....|-..-|. .+..+..+.++-..-..+.+.+
T Consensus 169 ~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~l 248 (421)
T PRK12798 169 KLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEIL 248 (421)
T ss_pred HHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 9999883 223222334455555667788998886544 45544444333333 3334455555443333444444
Q ss_pred hccCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 509 LDLKP-NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 509 ~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
-.++| .-...|..++..-...|+.+-|.-.-++....
T Consensus 249 s~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L 286 (421)
T PRK12798 249 SFMDPERQRELYLRIARAALIDGKTELARFASERALKL 286 (421)
T ss_pred HhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 45666 34568888999999999999888877777653
No 487
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.43 E-value=4.9e+02 Score=24.28 Aligned_cols=137 Identities=18% Similarity=0.355 Sum_probs=70.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--------C-------CcchHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHH
Q 007288 353 NALIDMYAKCGNISDSQKIFSEMSD--------R-------DLVTWTSMMIGYGAHGHGKEAIELFDEMVK-SGVRPDRI 416 (609)
Q Consensus 353 ~~l~~~~~~~g~~~~A~~~~~~~~~--------~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~ 416 (609)
+.|...|...|.+.+..+++.++.+ . -...|..=|+.|...++-.+-..+|++... ...-|-+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 4566666666777766666666542 0 123566667777777777777777776654 22234433
Q ss_pred HHHHHHHHH-----hccCCHHHHHH-HHHHhh---hcCCCCCh---hHHHHHHHHHhhcCC----HHHHHHHHHhCCCCC
Q 007288 417 VFMAVLTAC-----SHAGLVDEGLK-YFKSMN---DYNVNPNK---EIYGCVVDLLGRAGR----VKEAYELIKSMPFKP 480 (609)
Q Consensus 417 ~~~~ll~~~-----~~~~~~~~a~~-~~~~~~---~~~~~~~~---~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~p 480 (609)
.. .+|+-| .+.|.+++|-. +|+... +.| .|.. --|-.|.+.+.++|- ..+|. -..-.|
T Consensus 229 Im-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYLVLANMLmkS~iNPFDsQEAK----PyKNdP 302 (440)
T KOG1464|consen 229 IM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYLVLANMLMKSGINPFDSQEAK----PYKNDP 302 (440)
T ss_pred HH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHHHHHHHHHHcCCCCCcccccC----CCCCCH
Confidence 33 334433 34567776653 333332 233 2222 224445555555541 11110 002235
Q ss_pred CHhhHHHHHHHHHhC
Q 007288 481 DESVWGPLLGACKEH 495 (609)
Q Consensus 481 ~~~~~~~l~~~~~~~ 495 (609)
.......|+.+|...
T Consensus 303 EIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 303 EILAMTNLVAAYQNN 317 (440)
T ss_pred HHHHHHHHHHHHhcc
Confidence 566667777777654
No 488
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=28.20 E-value=3.4e+02 Score=24.07 Aligned_cols=60 Identities=15% Similarity=0.024 Sum_probs=33.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcch-HHHHHHHHHhcCChHHHHHHHHHHH
Q 007288 484 VWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT-YIILSNIYAAEGKWEEFAKFRKIMR 543 (609)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~ 543 (609)
....++..|...||++.|-++|.-++...+-|... |..=+..+.+.+.-....++++.|.
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~ 103 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLI 103 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHH
Confidence 34455666777777777777777776655533332 3333344445554444446666664
No 489
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=27.56 E-value=5.3e+02 Score=24.37 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=22.9
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhH
Q 007288 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSF 217 (609)
Q Consensus 185 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 217 (609)
+.+...+.+++++|+..|.+....|+..|..+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~ 41 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL 41 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh
Confidence 344556677788888888888877776665554
No 490
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=26.98 E-value=76 Score=23.49 Aligned_cols=33 Identities=12% Similarity=0.247 Sum_probs=15.5
Q ss_pred cCChhHHHHhhccCCCCCcccHHHHHHHHHcCC
Q 007288 59 EGLIEEARTLFDEMPERDVVSWTVMIAGYTSFN 91 (609)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 91 (609)
..+.+.|.++++.++..+..+|..+..++-..|
T Consensus 43 ~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~ 75 (84)
T cd08326 43 GSRRDQARQLLIDLETRGKQAFPAFLSALRETG 75 (84)
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 334444444444444444444444444444444
No 491
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=26.66 E-value=1.6e+02 Score=17.94 Aligned_cols=28 Identities=14% Similarity=0.122 Sum_probs=21.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 517 GTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
.+|..|+..-...++|++|..=|++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4677788888888888888887776654
No 492
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=26.41 E-value=2e+02 Score=29.18 Aligned_cols=173 Identities=13% Similarity=0.083 Sum_probs=0.0
Q ss_pred ChhHHHHhhccCCCCCcccHHH---------HHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHH
Q 007288 61 LIEEARTLFDEMPERDVVSWTV---------MIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNA 131 (609)
Q Consensus 61 ~~~~A~~~~~~~~~~~~~~~~~---------li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 131 (609)
++++|.++.+.++..-..+.-. +++-.+.-+.+++-+++++.+.+.| .......-|..|.+.+++++|
T Consensus 29 d~~eav~y~k~~p~~k~f~~~L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~g---~ad~lp~TIDSyTR~n~y~~A 105 (480)
T TIGR01503 29 DLQDAVDYHKSIPAHKNFAEKLELAKKKGKTMAQPRAGVALLDEHIELLRTLQEEG---GADFLPSTIDAYTRQNRYDEA 105 (480)
T ss_pred CHHHHHHHHHhCCccccHHHHHHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHcc---CCCccceeeecccccccHHHH
Q ss_pred HHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCC-----ChhhHHHHHHHHHhcC-------------
Q 007288 132 ALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK-----NDVSWTTLITGYAHSG------------- 193 (609)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g------------- 193 (609)
...++.-++.|.. ++++|--...-++..+++.+....| ....-..|.......|
T Consensus 106 ~~~l~~s~~~~~s--------~LNGfP~VnhGv~~~R~l~~~v~~PvQvRHGtpDarlL~e~~~a~G~~a~EGG~ISYnl 177 (480)
T TIGR01503 106 AVGIKESIKAGRS--------LLNGFPGVNHGVKGCRKVLEAVNLPLQIRHGTPDARLLAEIILAGGFTSFEGGGISYNI 177 (480)
T ss_pred HHHHHhhhhcCcc--------cccCCCcccccHHHHHHHHHhCCCCeeccCCCCcHHHHHHHHHHcCCCccCCCcceecc
Q ss_pred -------------ChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 007288 194 -------------NGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYC 260 (609)
Q Consensus 194 -------------~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 260 (609)
+|+.+-++.-...+.|+..|..+|..|...++ +|....--.++.++.
T Consensus 178 PYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLtgtLv--------------------PPsisiav~ilE~Ll 237 (480)
T TIGR01503 178 PYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLTGTLV--------------------PPSISNAIGIIEGLL 237 (480)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCCCCcc--------------------ChHHHHHHHHHHHHH
Q ss_pred hcCC
Q 007288 261 RFDC 264 (609)
Q Consensus 261 ~~g~ 264 (609)
-..+
T Consensus 238 a~eq 241 (480)
T TIGR01503 238 AAEQ 241 (480)
T ss_pred HHHc
No 493
>PRK09462 fur ferric uptake regulator; Provisional
Probab=26.32 E-value=3.3e+02 Score=22.70 Aligned_cols=64 Identities=11% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcC
Q 007288 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464 (609)
Q Consensus 401 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 464 (609)
.+-+.+.+.|++++..-...+--.....+..-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 3 ~~~~~l~~~glr~T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 3 DNNTALKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred hHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
No 494
>PHA03100 ankyrin repeat protein; Provisional
Probab=26.30 E-value=7.3e+02 Score=25.54 Aligned_cols=14 Identities=7% Similarity=0.164 Sum_probs=6.8
Q ss_pred hcCCCHHHHHHHHcc
Q 007288 159 TCCISMDNARLVFND 173 (609)
Q Consensus 159 ~~g~~~~~A~~~~~~ 173 (609)
..| +.+-...+++.
T Consensus 117 ~~~-~~~iv~~Ll~~ 130 (480)
T PHA03100 117 KSN-SYSIVEYLLDN 130 (480)
T ss_pred ccC-hHHHHHHHHHc
Confidence 444 55555555543
No 495
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=26.26 E-value=7.3e+02 Score=25.57 Aligned_cols=40 Identities=8% Similarity=-0.057 Sum_probs=34.7
Q ss_pred HHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 007288 490 GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529 (609)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 529 (609)
-.+...|+.-.|.+.|.+.......+|..|..|+.+|.-.
T Consensus 343 ~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 343 LLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 4478899999999999999988877899999999998754
No 496
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=25.95 E-value=1.1e+02 Score=21.43 Aligned_cols=47 Identities=6% Similarity=0.073 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHh
Q 007288 414 DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461 (609)
Q Consensus 414 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 461 (609)
....++.++..+++..-.+.++..+.++...|. .+...|-.-+..++
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 334444444444444444455555555444332 23344433333333
No 497
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=25.22 E-value=5.7e+02 Score=23.90 Aligned_cols=142 Identities=12% Similarity=0.077 Sum_probs=67.5
Q ss_pred HHHHhcCChhhHHHHH----HHHHHCCCCCCHhhHHHHHHHHHccCCch-hHHHHHHHHHH---hCCC--CChhHHHHHH
Q 007288 187 TGYAHSGNGYGGLGVF----KEMLLEGVEMNPYSFSIAVRACASTGWVS-FGKLIHAAVIK---HGFG--SNLPVMNSIL 256 (609)
Q Consensus 187 ~~~~~~g~~~~a~~~~----~~m~~~g~~p~~~t~~~ll~~~~~~g~~~-~a~~~~~~~~~---~g~~--~~~~~~~~l~ 256 (609)
..+.+.|+...|-++- +...+.+.++|......++..+...+.-+ .-..+.+.+++ .|-. -++.....+.
T Consensus 18 ~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a 97 (260)
T PF04190_consen 18 LILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLA 97 (260)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHH
T ss_pred HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHH
Confidence 3344555554444433 33334566666666666666555443222 23344444433 2212 2667888889
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHH
Q 007288 257 DMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ 335 (609)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 335 (609)
..|.+.|++.+|...|-.-..++...+..++.-....+ ..++ |...-..++ -+...++...|..
T Consensus 98 ~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL~l~n~~~A~~ 162 (260)
T PF04190_consen 98 EKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYLCLGNLRDANE 162 (260)
T ss_dssp HHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHHHTTBHHHHHH
T ss_pred HHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHHHhcCHHHHHH
Confidence 99999999999998876554444333322332222222 2111 222222233 3444667777777
Q ss_pred HHHHHHHh
Q 007288 336 VHAGIVRR 343 (609)
Q Consensus 336 ~~~~~~~~ 343 (609)
.+....+.
T Consensus 163 ~~~~f~~~ 170 (260)
T PF04190_consen 163 LFDTFTSK 170 (260)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655543
No 498
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=25.04 E-value=1e+02 Score=24.54 Aligned_cols=46 Identities=9% Similarity=0.004 Sum_probs=30.2
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCC
Q 007288 81 TVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMK 126 (609)
Q Consensus 81 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 126 (609)
..++..+...+.+-.|.++++.|.+.|...+..|.-.-|..+...|
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 4566777777778888888888888777777666555555554444
No 499
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=24.98 E-value=2.6e+02 Score=25.89 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=7.2
Q ss_pred HhccCCHHHHHHHHHHh
Q 007288 425 CSHAGLVDEGLKYFKSM 441 (609)
Q Consensus 425 ~~~~~~~~~a~~~~~~~ 441 (609)
|.+.|++++|.++|+.+
T Consensus 188 y~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 188 YFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 34444444444444433
No 500
>PRK14700 recombination factor protein RarA; Provisional
Probab=24.97 E-value=6.2e+02 Score=24.23 Aligned_cols=99 Identities=13% Similarity=0.189 Sum_probs=0.0
Q ss_pred CCCcchHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-----CHHHHHHHHHHhhhcCCCC
Q 007288 377 DRDLVTWTSMMIGYGAH---GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG-----LVDEGLKYFKSMNDYNVNP 448 (609)
Q Consensus 377 ~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~ 448 (609)
..+...+.-+|+++.++ .+.+.|+-.+.+|++.|-.|....-..++.+...-| -...|...++.....|.+-
T Consensus 120 Dk~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~PE 199 (300)
T PRK14700 120 HREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPE 199 (300)
T ss_pred cCCcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCChH
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 007288 449 NKEIYGCVVDLLGRAGRVKEAYELIKS 475 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 475 (609)
-.......+-.++.+-+...+...+.+
T Consensus 200 a~i~La~aviyLA~aPKSNs~y~A~~~ 226 (300)
T PRK14700 200 GRLVLAQAAIYLAVAPKSNACYKALAQ 226 (300)
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHH
Done!