Query 007288
Match_columns 609
No_of_seqs 640 out of 3605
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 22:00:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007288.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007288hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.6E-41 5.3E-46 362.1 39.6 484 54-547 61-581 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.4E-39 4.9E-44 346.9 26.0 479 42-528 80-596 (597)
3 4g26_A Pentatricopeptide repea 100.0 7E-28 2.4E-32 246.0 21.0 210 197-428 8-223 (501)
4 1w3b_A UDP-N-acetylglucosamine 100.0 5.7E-25 2E-29 220.7 41.0 373 121-531 8-388 (388)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1.1E-24 3.8E-29 218.6 41.3 353 185-545 5-368 (388)
6 4g26_A Pentatricopeptide repea 100.0 4.7E-27 1.6E-31 239.9 22.4 196 268-463 9-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 3.8E-22 1.3E-26 208.0 34.6 394 147-547 6-480 (514)
8 2gw1_A Mitochondrial precursor 99.9 4.2E-22 1.4E-26 207.7 30.8 443 47-522 7-489 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 6.7E-21 2.3E-25 195.0 36.0 336 178-542 25-406 (450)
10 3fp2_A TPR repeat-containing p 99.9 2.1E-21 7.3E-26 203.6 31.1 428 77-547 25-493 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 7.4E-20 2.5E-24 187.3 33.8 359 149-534 28-443 (450)
12 3fp2_A TPR repeat-containing p 99.8 6.1E-19 2.1E-23 184.9 31.4 438 45-520 24-500 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 2.7E-17 9.3E-22 162.4 33.9 306 213-546 2-336 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 3.4E-17 1.2E-21 161.7 34.4 324 178-529 2-353 (359)
15 3hym_B Cell division cycle pro 99.8 5.5E-17 1.9E-21 158.3 28.3 283 247-532 20-321 (330)
16 1b89_A Protein (clathrin heavy 99.8 1.8E-17 6.1E-22 161.1 24.3 283 57-372 14-305 (449)
17 1b89_A Protein (clathrin heavy 99.8 2.4E-17 8.1E-22 160.3 23.7 347 159-542 15-369 (449)
18 2xm6_A Protein corresponding t 99.8 1E-15 3.4E-20 158.1 37.0 363 147-528 39-452 (490)
19 2ooe_A Cleavage stimulation fa 99.8 7.3E-15 2.5E-19 153.3 41.2 409 111-546 12-493 (530)
20 2xm6_A Protein corresponding t 99.8 1.1E-14 3.9E-19 150.3 41.3 351 177-547 37-434 (490)
21 1xi4_A Clathrin heavy chain; a 99.8 1.9E-14 6.4E-19 155.8 43.5 449 43-537 895-1376(1630)
22 3hym_B Cell division cycle pro 99.8 4.7E-16 1.6E-20 151.6 28.5 265 278-546 20-300 (330)
23 1xi4_A Clathrin heavy chain; a 99.8 8.1E-14 2.8E-18 150.9 47.1 440 49-544 988-1457(1630)
24 1fch_A Peroxisomal targeting s 99.7 2.2E-16 7.6E-21 156.7 24.6 279 260-541 36-355 (368)
25 2ooe_A Cleavage stimulation fa 99.7 1E-14 3.6E-19 152.1 37.4 409 76-514 12-495 (530)
26 4g1t_A Interferon-induced prot 99.7 1.9E-15 6.5E-20 155.5 30.6 364 181-556 53-470 (472)
27 1fch_A Peroxisomal targeting s 99.7 6.4E-16 2.2E-20 153.3 23.9 293 159-474 37-354 (368)
28 4eqf_A PEX5-related protein; a 99.7 2.9E-16 1E-20 155.6 19.9 259 280-541 65-352 (365)
29 3mkr_A Coatomer subunit epsilo 99.7 1E-14 3.5E-19 138.8 28.9 269 258-539 8-288 (291)
30 4eqf_A PEX5-related protein; a 99.7 2.1E-15 7.3E-20 149.4 23.0 230 313-545 64-310 (365)
31 3cv0_A Peroxisome targeting si 99.7 4.3E-15 1.5E-19 144.5 23.2 252 288-543 29-313 (327)
32 3mkr_A Coatomer subunit epsilo 99.7 3.9E-15 1.3E-19 141.7 21.7 246 288-547 7-266 (291)
33 3spa_A Mtrpol, DNA-directed RN 99.7 7.9E-17 2.7E-21 168.9 9.3 148 347-496 125-286 (1134)
34 3cv0_A Peroxisome targeting si 99.7 2.9E-14 1E-18 138.6 25.3 274 178-476 20-312 (327)
35 4g1t_A Interferon-induced prot 99.6 1E-13 3.5E-18 142.5 29.4 381 111-523 50-471 (472)
36 3spa_A Mtrpol, DNA-directed RN 99.6 1.5E-15 5.2E-20 159.3 13.5 144 380-530 127-286 (1134)
37 3uq3_A Heat shock protein STI1 99.6 4.9E-14 1.7E-18 131.8 21.8 220 315-546 6-237 (258)
38 2pl2_A Hypothetical conserved 99.6 3E-14 1E-18 129.5 19.0 196 346-543 2-212 (217)
39 3uq3_A Heat shock protein STI1 99.6 2.5E-13 8.6E-18 127.0 19.8 231 282-524 7-255 (258)
40 1xnf_A Lipoprotein NLPI; TPR, 99.5 5.4E-13 1.9E-17 126.1 21.4 237 295-539 21-269 (275)
41 3e4b_A ALGK; tetratricopeptide 99.5 3.1E-12 1.1E-16 129.9 27.5 375 119-544 10-420 (452)
42 1ouv_A Conserved hypothetical 99.5 4.7E-12 1.6E-16 119.6 26.8 224 313-547 5-253 (273)
43 2ho1_A Type 4 fimbrial biogene 99.5 1.4E-12 4.9E-17 121.5 21.6 196 350-546 38-239 (252)
44 3e4b_A ALGK; tetratricopeptide 99.5 1.8E-12 6.3E-17 131.6 24.0 343 185-548 9-390 (452)
45 3u4t_A TPR repeat-containing p 99.5 1.8E-12 6.1E-17 122.4 21.0 175 353-529 78-268 (272)
46 2ho1_A Type 4 fimbrial biogene 99.5 7.4E-12 2.5E-16 116.6 24.6 204 315-520 38-247 (252)
47 2vq2_A PILW, putative fimbrial 99.5 3.6E-12 1.2E-16 116.3 22.0 196 349-545 8-211 (225)
48 2q7f_A YRRB protein; TPR, prot 99.5 7.9E-13 2.7E-17 122.4 16.8 198 348-547 22-224 (243)
49 2q7f_A YRRB protein; TPR, prot 99.5 1.1E-12 3.8E-17 121.4 17.3 213 313-528 22-239 (243)
50 2vq2_A PILW, putative fimbrial 99.5 1.3E-11 4.5E-16 112.5 24.0 208 313-522 7-222 (225)
51 3u4t_A TPR repeat-containing p 99.5 4.5E-12 1.5E-16 119.5 21.5 229 316-547 5-252 (272)
52 2h6f_A Protein farnesyltransfe 99.5 3.1E-12 1.1E-16 125.9 20.0 228 315-546 98-349 (382)
53 1ouv_A Conserved hypothetical 99.5 3.3E-11 1.1E-15 113.7 26.4 222 281-514 7-254 (273)
54 3vtx_A MAMA; tetratricopeptide 99.4 7.5E-12 2.6E-16 110.3 19.7 167 379-547 4-172 (184)
55 1xnf_A Lipoprotein NLPI; TPR, 99.4 5.1E-12 1.7E-16 119.3 19.7 219 326-547 17-246 (275)
56 2pl2_A Hypothetical conserved 99.4 5.7E-12 2E-16 114.3 19.0 191 313-508 4-211 (217)
57 2h6f_A Protein farnesyltransfe 99.4 1.5E-11 5.1E-16 121.0 22.6 246 280-529 97-366 (382)
58 4abn_A Tetratricopeptide repea 99.4 1.7E-12 5.7E-17 132.8 16.0 208 330-541 84-317 (474)
59 4a1s_A PINS, partner of inscut 99.4 2E-12 6.7E-17 130.2 15.7 255 288-544 56-371 (411)
60 3sf4_A G-protein-signaling mod 99.4 9.1E-12 3.1E-16 124.9 18.9 94 248-341 8-114 (406)
61 3sf4_A G-protein-signaling mod 99.4 9.9E-12 3.4E-16 124.7 18.7 289 216-533 11-364 (406)
62 3ro2_A PINS homolog, G-protein 99.4 1.5E-11 5.2E-16 119.6 18.5 256 288-545 13-332 (338)
63 4e6h_A MRNA 3'-END-processing 99.4 3.7E-09 1.3E-13 111.1 37.0 424 75-527 64-585 (679)
64 3ulq_A Response regulator aspa 99.4 2.1E-11 7.3E-16 121.3 18.0 223 321-544 110-367 (383)
65 3nf1_A KLC 1, kinesin light ch 99.3 5.2E-12 1.8E-16 121.6 11.2 230 315-544 28-306 (311)
66 4gyw_A UDP-N-acetylglucosamine 99.3 2.2E-11 7.5E-16 129.5 16.8 162 380-544 9-173 (723)
67 3vtx_A MAMA; tetratricopeptide 99.3 5.7E-11 2E-15 104.6 16.9 166 348-515 4-174 (184)
68 4a1s_A PINS, partner of inscut 99.3 4.3E-11 1.5E-15 120.4 18.0 278 182-513 51-374 (411)
69 3ro2_A PINS homolog, G-protein 99.3 6.9E-11 2.4E-15 114.9 17.7 132 382-513 185-334 (338)
70 3ulq_A Response regulator aspa 99.3 3.3E-10 1.1E-14 112.7 21.8 226 288-513 111-370 (383)
71 3as5_A MAMA; tetratricopeptide 99.3 1.8E-10 6E-15 101.2 17.5 160 384-545 12-173 (186)
72 4e6h_A MRNA 3'-END-processing 99.3 1.2E-08 4.2E-13 107.2 34.0 433 92-547 47-572 (679)
73 3q15_A PSP28, response regulat 99.3 2.1E-10 7E-15 113.9 19.1 222 322-544 109-364 (378)
74 2ond_A Cleavage stimulation fa 99.3 1.5E-09 5.3E-14 104.2 24.2 183 331-515 81-274 (308)
75 2ond_A Cleavage stimulation fa 99.2 8.7E-10 3E-14 105.9 22.3 213 331-547 33-272 (308)
76 4i17_A Hypothetical protein; T 99.2 3.1E-10 1.1E-14 103.7 16.4 190 348-547 6-211 (228)
77 3nf1_A KLC 1, kinesin light ch 99.2 3.4E-11 1.2E-15 115.8 10.1 243 249-514 27-310 (311)
78 4i17_A Hypothetical protein; T 99.2 9.1E-10 3.1E-14 100.6 19.0 204 312-526 5-224 (228)
79 1hz4_A MALT regulatory protein 99.2 1.2E-08 4.3E-13 100.8 28.1 255 290-544 24-321 (373)
80 3as5_A MAMA; tetratricopeptide 99.2 1.5E-09 5.3E-14 95.1 18.8 166 350-517 9-179 (186)
81 4abn_A Tetratricopeptide repea 99.2 4E-10 1.4E-14 115.2 15.4 180 365-547 84-289 (474)
82 3q15_A PSP28, response regulat 99.1 1.6E-08 5.3E-13 100.3 24.7 222 289-511 110-365 (378)
83 3edt_B KLC 2, kinesin light ch 99.1 6E-10 2E-14 105.3 13.8 196 349-544 43-280 (283)
84 1qqe_A Vesicular transport pro 99.1 9.6E-10 3.3E-14 104.6 15.0 201 329-544 32-268 (292)
85 1hz4_A MALT regulatory protein 99.1 7.5E-08 2.6E-12 95.1 28.7 157 186-342 21-202 (373)
86 1qqe_A Vesicular transport pro 99.1 4.3E-09 1.5E-13 100.1 17.0 198 323-520 46-278 (292)
87 3qky_A Outer membrane assembly 99.0 1.2E-08 4.1E-13 95.2 19.4 205 348-591 14-247 (261)
88 4gyw_A UDP-N-acetylglucosamine 99.0 1.6E-09 5.6E-14 115.2 14.8 163 348-513 8-176 (723)
89 2yhc_A BAMD, UPF0169 lipoprote 99.0 2.3E-08 7.9E-13 90.9 18.9 180 350-548 5-216 (225)
90 2fo7_A Synthetic consensus TPR 99.0 1.1E-08 3.8E-13 84.1 15.0 126 419-545 5-132 (136)
91 4ga2_A E3 SUMO-protein ligase 99.0 1E-09 3.5E-14 92.7 7.5 142 387-531 4-149 (150)
92 3mv2_B Coatomer subunit epsilo 99.0 5.7E-08 2E-12 90.6 19.7 174 368-545 85-282 (310)
93 3edt_B KLC 2, kinesin light ch 98.9 7.1E-09 2.4E-13 97.7 13.5 215 298-512 27-282 (283)
94 2pzi_A Probable serine/threoni 98.9 5.6E-09 1.9E-13 111.7 13.0 146 381-529 434-581 (681)
95 2fo7_A Synthetic consensus TPR 98.9 5.2E-08 1.8E-12 79.9 16.0 131 382-514 3-135 (136)
96 3qky_A Outer membrane assembly 98.9 2E-08 6.8E-13 93.7 15.0 202 312-533 13-249 (261)
97 3rjv_A Putative SEL1 repeat pr 98.9 1.1E-07 3.9E-12 85.4 19.3 171 369-547 6-199 (212)
98 3qou_A Protein YBBN; thioredox 98.9 4.6E-08 1.6E-12 92.6 16.4 174 366-543 103-282 (287)
99 2r5s_A Uncharacterized protein 98.8 2.6E-08 8.8E-13 86.7 11.8 156 385-544 11-172 (176)
100 3mv2_B Coatomer subunit epsilo 98.8 3.3E-07 1.1E-11 85.4 19.5 239 259-518 23-289 (310)
101 2ifu_A Gamma-SNAP; membrane fu 98.8 9.2E-08 3.1E-12 91.6 16.0 193 327-537 29-253 (307)
102 2vsy_A XCC0866; transferase, g 98.8 5.7E-08 2E-12 101.9 15.6 160 362-523 2-169 (568)
103 3urz_A Uncharacterized protein 98.8 1.1E-07 3.9E-12 85.1 15.3 128 384-514 58-189 (208)
104 4ga2_A E3 SUMO-protein ligase 98.8 6.7E-09 2.3E-13 87.6 5.6 124 421-545 3-129 (150)
105 3gyz_A Chaperone protein IPGC; 98.8 3.1E-08 1.1E-12 83.1 9.7 98 449-546 35-134 (151)
106 3u3w_A Transcriptional activat 98.8 5.5E-07 1.9E-11 85.5 19.6 159 386-544 81-265 (293)
107 2vsy_A XCC0866; transferase, g 98.8 3.6E-07 1.2E-11 95.8 20.1 147 327-476 2-154 (568)
108 2pzi_A Probable serine/threoni 98.7 5E-07 1.7E-11 96.6 20.8 188 325-517 402-608 (681)
109 3dra_A Protein farnesyltransfe 98.7 2.6E-06 9E-11 80.2 23.0 191 352-544 70-286 (306)
110 1hh8_A P67PHOX, NCF-2, neutrop 98.7 3.1E-07 1.1E-11 82.4 16.1 119 423-545 14-150 (213)
111 2vgx_A Chaperone SYCD; alterna 98.7 5E-08 1.7E-12 81.9 9.7 98 449-546 20-119 (148)
112 4gco_A Protein STI-1; structur 98.7 1.5E-07 5.2E-12 76.4 11.8 108 417-525 15-124 (126)
113 2qfc_A PLCR protein; TPR, HTH, 98.7 5.4E-07 1.8E-11 85.6 16.8 163 382-544 77-265 (293)
114 2r5s_A Uncharacterized protein 98.7 3.7E-07 1.3E-11 79.2 13.6 156 352-510 9-172 (176)
115 3qou_A Protein YBBN; thioredox 98.7 2.9E-07 9.9E-12 87.0 13.9 134 413-547 115-250 (287)
116 3urz_A Uncharacterized protein 98.6 1.3E-06 4.3E-11 78.2 17.2 131 355-489 60-197 (208)
117 4gco_A Protein STI-1; structur 98.6 2.2E-07 7.6E-12 75.4 11.0 97 450-546 13-111 (126)
118 2uy1_A Cleavage stimulation fa 98.6 4.1E-05 1.4E-09 78.0 29.8 201 298-510 198-412 (493)
119 2yhc_A BAMD, UPF0169 lipoprote 98.6 9.7E-07 3.3E-11 80.1 16.0 184 313-516 3-218 (225)
120 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1.7E-06 5.9E-11 77.5 17.6 144 353-515 10-154 (213)
121 1a17_A Serine/threonine protei 98.6 6.6E-07 2.3E-11 76.5 13.9 127 417-544 15-145 (166)
122 2ifu_A Gamma-SNAP; membrane fu 98.6 1.5E-07 5.2E-12 90.0 10.6 195 326-543 3-222 (307)
123 2xcb_A PCRH, regulatory protei 98.6 5E-07 1.7E-11 75.2 12.4 97 449-545 17-115 (142)
124 2c2l_A CHIP, carboxy terminus 98.6 1.4E-07 4.9E-12 88.9 9.8 192 349-545 4-199 (281)
125 3u3w_A Transcriptional activat 98.6 6.4E-06 2.2E-10 78.0 21.0 157 355-511 81-266 (293)
126 3rjv_A Putative SEL1 repeat pr 98.6 3.4E-06 1.2E-10 75.6 17.9 162 348-513 17-199 (212)
127 1na0_A Designed protein CTPR3; 98.6 1.2E-06 4E-11 70.5 13.4 114 416-530 10-125 (125)
128 1p5q_A FKBP52, FK506-binding p 98.6 6E-07 2E-11 87.0 13.3 127 417-543 149-292 (336)
129 3dra_A Protein farnesyltransfe 98.5 6.9E-05 2.4E-09 70.5 26.2 230 290-524 42-301 (306)
130 2vyi_A SGTA protein; chaperone 98.5 1.1E-06 3.7E-11 71.4 12.3 116 416-532 13-130 (131)
131 2lni_A Stress-induced-phosphop 98.5 1.1E-06 3.8E-11 71.7 12.3 115 416-531 17-133 (133)
132 2e2e_A Formate-dependent nitri 98.5 3.5E-07 1.2E-11 79.4 9.4 121 426-547 21-146 (177)
133 3gyz_A Chaperone protein IPGC; 98.5 1.3E-06 4.3E-11 73.2 12.1 104 411-515 31-137 (151)
134 2uy1_A Cleavage stimulation fa 98.5 0.00033 1.1E-08 71.2 32.2 351 48-441 17-410 (493)
135 3upv_A Heat shock protein STI1 98.5 1E-06 3.5E-11 71.4 10.6 97 450-546 4-102 (126)
136 2kck_A TPR repeat; tetratricop 98.5 1E-06 3.4E-11 69.4 10.0 99 449-547 5-108 (112)
137 3gw4_A Uncharacterized protein 98.4 2.5E-06 8.4E-11 75.7 13.0 129 416-544 27-175 (203)
138 3sz7_A HSC70 cochaperone (SGT) 98.4 4.1E-06 1.4E-10 71.5 13.9 93 452-544 13-107 (164)
139 4f3v_A ESX-1 secretion system 98.4 4.1E-06 1.4E-10 77.0 14.1 183 361-547 18-239 (282)
140 1hxi_A PEX5, peroxisome target 98.4 1.1E-06 3.6E-11 70.7 9.0 96 452-547 19-116 (121)
141 3gw4_A Uncharacterized protein 98.4 1.6E-06 5.5E-11 76.9 11.0 151 361-511 4-176 (203)
142 4gcn_A Protein STI-1; structur 98.4 8.3E-07 2.8E-11 72.1 8.1 93 452-544 10-111 (127)
143 2vgx_A Chaperone SYCD; alterna 98.4 1.6E-06 5.6E-11 72.5 10.1 103 416-519 22-126 (148)
144 3q49_B STIP1 homology and U bo 98.4 3.2E-06 1.1E-10 69.5 11.6 98 448-545 7-106 (137)
145 2lni_A Stress-induced-phosphop 98.4 3.2E-06 1.1E-10 68.9 11.3 100 447-546 13-114 (133)
146 2qfc_A PLCR protein; TPR, HTH, 98.4 7.3E-06 2.5E-10 77.6 15.0 159 353-511 79-266 (293)
147 1elw_A TPR1-domain of HOP; HOP 98.3 8.8E-06 3E-10 64.5 13.2 108 417-525 6-115 (118)
148 1elw_A TPR1-domain of HOP; HOP 98.3 4.1E-06 1.4E-10 66.5 11.0 99 449-547 3-103 (118)
149 2fbn_A 70 kDa peptidylprolyl i 98.3 3.5E-06 1.2E-10 74.6 11.5 96 451-546 89-187 (198)
150 4f3v_A ESX-1 secretion system 98.3 1.1E-06 3.8E-11 80.8 8.3 192 326-522 18-247 (282)
151 2dba_A Smooth muscle cell asso 98.3 5E-06 1.7E-10 69.3 11.6 95 450-544 28-127 (148)
152 1na0_A Designed protein CTPR3; 98.3 4.6E-06 1.6E-10 66.9 11.0 97 450-546 9-107 (125)
153 2e2e_A Formate-dependent nitri 98.3 5.2E-06 1.8E-10 71.9 11.8 127 391-519 21-152 (177)
154 2hr2_A Hypothetical protein; a 98.3 3E-06 1E-10 70.2 8.9 62 484-545 59-131 (159)
155 3q7a_A Farnesyltransferase alp 98.3 9.6E-05 3.3E-09 70.3 20.5 32 513-544 299-330 (349)
156 3upv_A Heat shock protein STI1 98.3 8.4E-06 2.9E-10 65.9 11.7 109 417-526 6-122 (126)
157 1wao_1 Serine/threonine protei 98.3 1.5E-05 5.2E-10 81.0 15.9 115 358-474 15-134 (477)
158 2xcb_A PCRH, regulatory protei 98.3 6.1E-06 2.1E-10 68.5 10.7 105 417-522 20-126 (142)
159 1a17_A Serine/threonine protei 98.2 1.6E-05 5.4E-10 67.7 13.5 127 382-510 15-145 (166)
160 3sz7_A HSC70 cochaperone (SGT) 98.2 1.2E-05 4E-10 68.6 12.6 108 415-523 11-120 (164)
161 2vyi_A SGTA protein; chaperone 98.2 7.8E-06 2.7E-10 66.2 10.5 98 449-546 11-110 (131)
162 2dba_A Smooth muscle cell asso 98.2 2E-05 6.8E-10 65.5 13.2 111 415-527 28-144 (148)
163 2xev_A YBGF; tetratricopeptide 98.2 5.6E-06 1.9E-10 67.2 9.5 90 456-545 8-105 (129)
164 4gcn_A Protein STI-1; structur 98.2 8.1E-06 2.8E-10 66.2 9.9 95 418-513 11-114 (127)
165 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.6E-05 5.3E-10 80.6 13.5 95 450-544 317-414 (457)
166 4b4t_Q 26S proteasome regulato 98.2 2.7E-05 9.2E-10 78.3 15.3 162 383-544 58-244 (434)
167 3q7a_A Farnesyltransferase alp 98.2 0.0016 5.5E-08 61.9 26.1 223 295-522 70-343 (349)
168 3q49_B STIP1 homology and U bo 98.2 1.7E-05 5.7E-10 65.1 11.1 100 414-514 8-109 (137)
169 3ro3_A PINS homolog, G-protein 98.1 1.4E-05 4.7E-10 67.5 10.2 93 452-544 51-157 (164)
170 3dss_A Geranylgeranyl transfer 98.1 0.0014 4.6E-08 62.1 24.4 225 292-522 41-315 (331)
171 2kck_A TPR repeat; tetratricop 98.1 2E-05 6.9E-10 61.6 10.2 98 417-515 8-110 (112)
172 2c2l_A CHIP, carboxy terminus 98.1 1.7E-05 5.8E-10 74.5 11.3 110 414-524 3-114 (281)
173 1elr_A TPR2A-domain of HOP; HO 98.1 1.2E-05 4.3E-10 65.0 8.7 95 451-545 5-108 (131)
174 3rkv_A Putative peptidylprolyl 98.1 1.1E-05 3.7E-10 68.7 8.6 64 482-545 63-126 (162)
175 3k9i_A BH0479 protein; putativ 98.1 3.1E-06 1.1E-10 67.5 4.8 83 463-545 3-90 (117)
176 1wao_1 Serine/threonine protei 98.1 8.2E-06 2.8E-10 83.0 9.0 115 425-540 16-134 (477)
177 1elr_A TPR2A-domain of HOP; HO 98.1 3.9E-05 1.3E-09 62.0 11.5 109 417-527 6-123 (131)
178 1ihg_A Cyclophilin 40; ppiase 98.1 2.3E-05 7.7E-10 76.7 11.7 90 449-538 272-363 (370)
179 1p5q_A FKBP52, FK506-binding p 98.1 4.3E-05 1.5E-09 73.8 13.5 126 381-509 148-292 (336)
180 1hxi_A PEX5, peroxisome target 98.0 1.8E-05 6.1E-10 63.4 8.9 94 421-515 23-118 (121)
181 2if4_A ATFKBP42; FKBP-like, al 98.0 1E-05 3.5E-10 78.3 8.8 148 381-547 180-330 (338)
182 2xev_A YBGF; tetratricopeptide 98.0 6.7E-05 2.3E-09 60.6 12.4 100 421-521 8-115 (129)
183 3dss_A Geranylgeranyl transfer 98.0 0.0012 4.2E-08 62.4 21.7 219 326-547 41-306 (331)
184 3rkv_A Putative peptidylprolyl 98.0 1.9E-05 6.5E-10 67.1 8.1 76 450-525 63-141 (162)
185 4b4t_Q 26S proteasome regulato 98.0 0.00032 1.1E-08 70.3 18.4 188 288-475 12-241 (434)
186 1dce_A Protein (RAB geranylger 97.9 0.00039 1.3E-08 72.0 18.6 169 364-534 44-244 (567)
187 2fbn_A 70 kDa peptidylprolyl i 97.9 6.8E-05 2.3E-09 66.1 11.3 95 452-546 40-152 (198)
188 2hr2_A Hypothetical protein; a 97.9 2.2E-05 7.6E-10 65.0 7.1 72 452-523 59-143 (159)
189 3k9i_A BH0479 protein; putativ 97.9 1.1E-05 3.8E-10 64.2 4.6 90 428-517 3-96 (117)
190 3n71_A Histone lysine methyltr 97.9 9.9E-05 3.4E-09 74.5 12.6 122 425-546 319-465 (490)
191 2if4_A ATFKBP42; FKBP-like, al 97.9 4.3E-05 1.5E-09 73.8 9.7 151 350-516 180-333 (338)
192 3ro3_A PINS homolog, G-protein 97.8 4.9E-05 1.7E-09 64.1 8.4 129 383-511 12-158 (164)
193 2l6j_A TPR repeat-containing p 97.8 7E-06 2.4E-10 64.5 2.8 92 449-540 3-102 (111)
194 3ma5_A Tetratricopeptide repea 97.8 7.1E-05 2.4E-09 57.5 8.5 65 481-545 6-70 (100)
195 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 7.2E-05 2.5E-09 75.6 9.6 66 482-547 317-382 (457)
196 1na3_A Designed protein CTPR2; 97.7 0.00015 5.2E-09 54.1 8.3 81 450-530 9-91 (91)
197 1zu2_A Mitochondrial import re 97.7 1.7E-05 5.9E-10 65.5 2.9 50 498-547 62-122 (158)
198 1ihg_A Cyclophilin 40; ppiase 97.7 0.00013 4.4E-09 71.3 9.4 114 415-546 223-337 (370)
199 2kat_A Uncharacterized protein 97.6 0.00022 7.4E-09 56.3 8.8 77 469-545 4-82 (115)
200 3bee_A Putative YFRE protein; 97.6 0.00031 1E-08 52.8 9.0 69 480-548 4-75 (93)
201 1klx_A Cysteine rich protein B 97.6 0.00064 2.2E-08 55.7 11.0 111 430-547 10-128 (138)
202 2l6j_A TPR repeat-containing p 97.6 0.00023 7.9E-09 55.5 8.0 67 481-547 3-69 (111)
203 3lvg_A Clathrin heavy chain 1; 97.5 5.6E-05 1.9E-09 73.0 3.6 234 46-298 54-323 (624)
204 3n71_A Histone lysine methyltr 97.5 0.00076 2.6E-08 68.1 11.9 121 390-510 319-463 (490)
205 1dce_A Protein (RAB geranylger 97.4 0.0035 1.2E-07 64.8 16.4 152 393-547 42-223 (567)
206 1klx_A Cysteine rich protein B 97.4 0.0024 8.1E-08 52.2 11.9 112 394-513 9-128 (138)
207 3qwp_A SET and MYND domain-con 97.3 0.00029 1E-08 70.0 6.9 115 458-590 295-427 (429)
208 1na3_A Designed protein CTPR2; 97.3 0.00059 2E-08 50.8 7.1 65 482-546 9-73 (91)
209 1zu2_A Mitochondrial import re 97.3 0.00021 7.3E-09 59.0 4.4 102 392-516 14-125 (158)
210 2kat_A Uncharacterized protein 97.1 0.0015 5E-08 51.3 7.9 79 434-513 4-84 (115)
211 3qww_A SET and MYND domain-con 97.0 0.0011 3.8E-08 65.7 7.0 82 463-544 311-410 (433)
212 2kc7_A BFR218_protein; tetratr 97.0 0.0015 5.1E-08 49.6 6.2 54 491-544 9-63 (99)
213 3ma5_A Tetratricopeptide repea 96.9 0.0023 7.7E-08 48.8 6.7 65 449-513 6-72 (100)
214 3lvg_A Clathrin heavy chain 1; 96.8 0.0006 2E-08 66.1 3.4 225 61-304 40-287 (624)
215 1wy6_A Hypothetical protein ST 96.8 0.13 4.3E-06 40.4 16.3 141 390-548 17-157 (172)
216 3u64_A Protein TP_0956; tetrat 96.7 0.028 9.5E-07 51.2 13.3 87 466-552 179-276 (301)
217 3qww_A SET and MYND domain-con 96.7 0.008 2.7E-07 59.5 10.9 91 428-518 311-423 (433)
218 1pc2_A Mitochondria fission pr 96.7 0.011 3.7E-07 48.2 9.6 81 433-514 16-103 (152)
219 3qwp_A SET and MYND domain-con 96.6 0.016 5.6E-07 57.4 12.3 98 423-520 295-414 (429)
220 2kc7_A BFR218_protein; tetratr 96.6 0.009 3.1E-07 45.0 8.1 79 456-542 6-87 (99)
221 3ly7_A Transcriptional activat 96.6 0.033 1.1E-06 52.9 13.3 134 378-513 192-341 (372)
222 3ly7_A Transcriptional activat 96.3 0.031 1.1E-06 53.1 11.6 135 411-548 190-342 (372)
223 3mkq_A Coatomer beta'-subunit; 96.3 0.44 1.5E-05 51.7 22.6 152 187-373 607-760 (814)
224 3mkq_A Coatomer beta'-subunit; 96.1 0.31 1.1E-05 53.0 20.2 102 358-476 661-762 (814)
225 2v5f_A Prolyl 4-hydroxylase su 96.0 0.038 1.3E-06 42.2 8.8 71 452-522 7-86 (104)
226 1pc2_A Mitochondria fission pr 95.9 0.029 1E-06 45.7 7.8 87 395-483 13-105 (152)
227 3bee_A Putative YFRE protein; 95.6 0.071 2.4E-06 39.6 8.6 67 448-514 4-75 (93)
228 3mkq_B Coatomer subunit alpha; 95.4 0.6 2.1E-05 39.0 14.3 103 358-477 14-116 (177)
229 1nzn_A CGI-135 protein, fissio 95.3 0.15 5.2E-06 39.8 9.6 27 518-544 76-102 (126)
230 4gns_B Protein CSD3, chitin bi 95.3 0.14 4.9E-06 53.8 12.5 54 490-543 345-398 (754)
231 2v5f_A Prolyl 4-hydroxylase su 94.4 0.15 5E-06 38.8 7.6 65 481-545 4-75 (104)
232 1nzn_A CGI-135 protein, fissio 94.3 0.32 1.1E-05 38.0 9.1 88 431-519 17-111 (126)
233 1qsa_A Protein (soluble lytic 94.2 5.9 0.0002 40.9 23.8 114 394-510 228-347 (618)
234 1y8m_A FIS1; mitochondria, unk 94.2 1.6 5.5E-05 34.7 13.1 45 500-544 60-105 (144)
235 3u64_A Protein TP_0956; tetrat 93.8 2.5 8.6E-05 38.5 15.2 113 362-476 134-266 (301)
236 2wpv_A GET4, UPF0363 protein Y 93.3 5.2 0.00018 37.1 17.5 168 48-242 35-216 (312)
237 1wy6_A Hypothetical protein ST 93.1 2.6 8.8E-05 33.2 13.4 84 362-447 74-157 (172)
238 4ady_A RPN2, 26S proteasome re 92.8 13 0.00043 40.3 27.9 258 223-486 383-665 (963)
239 4h7y_A Dual specificity protei 92.4 0.89 3E-05 36.5 8.9 60 463-522 73-134 (161)
240 3mkq_B Coatomer subunit alpha; 92.3 4.4 0.00015 33.8 18.3 130 322-477 13-142 (177)
241 4h7y_A Dual specificity protei 91.8 0.7 2.4E-05 37.1 7.7 56 493-548 71-126 (161)
242 3o48_A Mitochondria fission 1 90.8 1.6 5.6E-05 34.2 8.8 45 500-544 61-106 (134)
243 3lpz_A GET4 (YOR164C homolog); 90.4 11 0.00039 35.1 20.5 168 48-242 37-215 (336)
244 4ady_A RPN2, 26S proteasome re 89.4 27 0.00091 37.8 26.7 38 167-207 221-258 (963)
245 2ff4_A Probable regulatory pro 87.7 1.3 4.3E-05 43.1 7.8 69 485-553 174-247 (388)
246 4b4t_P 26S proteasome regulato 87.1 16 0.00053 36.1 15.3 181 295-476 32-244 (445)
247 3txn_A 26S proteasome regulato 87.0 15 0.00053 35.3 14.6 161 315-475 20-206 (394)
248 4gns_B Protein CSD3, chitin bi 86.3 3.5 0.00012 43.5 10.4 51 389-441 346-397 (754)
249 4fhn_B Nucleoporin NUP120; pro 85.7 9 0.00031 43.2 14.3 64 484-547 901-969 (1139)
250 4b4t_P 26S proteasome regulato 84.9 18 0.00063 35.6 14.6 50 327-376 29-83 (445)
251 2uwj_G Type III export protein 84.1 10 0.00036 27.7 9.2 87 329-420 21-107 (115)
252 3ffl_A Anaphase-promoting comp 83.4 9 0.00031 31.4 9.4 113 354-479 25-151 (167)
253 2p58_C Putative type III secre 83.4 11 0.00039 27.6 9.8 87 329-420 22-108 (116)
254 2ff4_A Probable regulatory pro 83.0 8.2 0.00028 37.3 11.0 68 385-453 176-248 (388)
255 3lpz_A GET4 (YOR164C homolog); 83.0 30 0.001 32.2 23.1 167 351-544 37-215 (336)
256 4fhn_B Nucleoporin NUP120; pro 82.7 24 0.00083 39.7 16.1 144 319-469 817-990 (1139)
257 1v54_E Cytochrome C oxidase po 82.0 11 0.00037 27.9 8.2 62 395-458 25-87 (109)
258 3ffl_A Anaphase-promoting comp 81.9 8.2 0.00028 31.6 8.7 54 422-475 27-88 (167)
259 3o48_A Mitochondria fission 1 81.8 15 0.00053 28.7 9.8 27 490-516 86-112 (134)
260 1v54_E Cytochrome C oxidase po 81.1 11 0.00037 27.9 8.0 60 297-357 28-87 (109)
261 1zbp_A Hypothetical protein VP 79.0 20 0.00067 32.2 10.8 121 389-517 6-135 (273)
262 1y8m_A FIS1; mitochondria, unk 78.8 23 0.00078 28.2 10.2 75 447-521 36-116 (144)
263 2uwj_G Type III export protein 78.4 17 0.0006 26.6 8.2 84 229-317 21-105 (115)
264 1zbp_A Hypothetical protein VP 77.6 3.4 0.00012 37.0 5.5 56 459-514 6-63 (273)
265 2qx5_A Nucleoporin NIC96; mRNA 77.5 49 0.0017 34.3 14.9 42 47-89 154-198 (661)
266 2p58_C Putative type III secre 77.4 19 0.00065 26.5 8.8 84 229-317 22-106 (116)
267 1wdy_A 2-5A-dependent ribonucl 75.0 31 0.0011 30.8 12.0 208 50-273 6-240 (285)
268 3ltj_A Alpharep-4; protein eng 74.6 38 0.0013 28.6 20.3 79 248-329 27-105 (201)
269 3ltm_A Alpha-REP4; protein eng 74.5 40 0.0014 28.7 20.1 48 348-395 125-172 (211)
270 2wpv_A GET4, UPF0363 protein Y 73.5 57 0.0019 30.1 21.7 167 351-544 35-216 (312)
271 2y69_E Cytochrome C oxidase su 71.8 26 0.00088 27.5 8.2 61 396-458 69-130 (152)
272 1wdy_A 2-5A-dependent ribonucl 68.7 64 0.0022 28.7 13.8 16 358-373 225-240 (285)
273 3kea_A K1L; tropism, ANK repea 68.4 54 0.0018 29.6 11.9 19 53-71 35-53 (285)
274 3esl_A Checkpoint serine/threo 68.3 50 0.0017 28.1 10.2 54 495-548 92-147 (202)
275 2y69_E Cytochrome C oxidase su 68.0 31 0.0011 27.1 8.0 60 297-357 71-130 (152)
276 1k1a_A B-cell lymphoma 3-encod 66.4 51 0.0017 28.5 11.0 24 87-110 16-39 (241)
277 3ltj_A Alpharep-4; protein eng 65.5 60 0.0021 27.2 19.4 17 248-264 120-136 (201)
278 3eu9_A Huntingtin-interacting 64.7 46 0.0016 28.7 10.4 112 53-174 13-132 (240)
279 3hra_A Ankyrin repeat family p 64.3 61 0.0021 27.0 10.8 55 53-112 9-67 (201)
280 3esl_A Checkpoint serine/threo 63.4 63 0.0021 27.5 9.9 56 394-449 93-149 (202)
281 3jxi_A Vanilloid receptor-rela 62.1 23 0.00078 31.5 7.9 53 86-138 11-72 (260)
282 4b4t_R RPN7, 26S proteasome re 59.7 47 0.0016 32.4 10.1 34 512-547 343-376 (429)
283 3l6a_A Eukaryotic translation 58.9 1.2E+02 0.0042 28.6 12.7 60 253-312 16-81 (364)
284 4b4t_R RPN7, 26S proteasome re 57.6 19 0.00064 35.3 6.8 96 417-512 133-238 (429)
285 1n11_A Ankyrin; clathrin, BAND 56.4 1.4E+02 0.005 28.7 15.5 206 51-274 16-234 (437)
286 3ltm_A Alpha-REP4; protein eng 55.3 95 0.0032 26.2 19.0 17 248-264 125-141 (211)
287 2pk8_A Uncharacterized protein 54.1 8.2 0.00028 27.5 2.4 29 573-601 13-41 (103)
288 2rfa_A Transient receptor pote 52.2 1.1E+02 0.0038 26.1 11.1 51 51-102 5-59 (232)
289 1k1a_A B-cell lymphoma 3-encod 50.3 95 0.0033 26.7 9.9 77 51-132 11-96 (241)
290 4a1g_A Mitotic checkpoint seri 50.2 99 0.0034 24.9 9.7 49 501-549 84-134 (152)
291 2d2s_A Exocyst complex compone 49.5 70 0.0024 28.1 8.4 86 387-475 25-116 (235)
292 2nsz_A Programmed cell death p 49.3 65 0.0022 25.1 7.4 63 353-415 11-78 (129)
293 3eiq_C Programmed cell death p 48.9 1.8E+02 0.006 27.4 16.3 24 384-407 221-244 (358)
294 1qsa_A Protein (soluble lytic 48.8 2.4E+02 0.0082 29.0 37.7 377 48-451 74-486 (618)
295 4a1g_A Mitotic checkpoint seri 47.3 1.1E+02 0.0038 24.6 9.1 54 397-450 82-136 (152)
296 3kea_A K1L; tropism, ANK repea 46.6 51 0.0017 29.8 7.5 91 456-550 132-222 (285)
297 3d9h_A CDNA FLJ77766, highly s 46.5 1.2E+02 0.0042 27.1 10.2 116 49-175 15-149 (285)
298 2d2s_A Exocyst complex compone 45.1 68 0.0023 28.1 7.6 87 185-274 24-116 (235)
299 3txn_A 26S proteasome regulato 45.1 2.1E+02 0.0073 27.3 27.7 282 252-547 22-345 (394)
300 2wvi_A Mitotic checkpoint seri 44.3 1.3E+02 0.0044 24.6 9.2 49 501-549 79-129 (164)
301 3hra_A Ankyrin repeat family p 44.2 1.1E+02 0.0038 25.3 9.0 172 87-269 12-195 (201)
302 3t8k_A Uncharacterized protein 43.9 1.2E+02 0.0042 25.1 9.0 93 55-147 12-109 (186)
303 1ug3_A EIF4GI, eukaryotic prot 43.8 1.8E+02 0.0062 27.1 10.9 59 253-311 15-78 (339)
304 4g8k_A 2-5A-dependent ribonucl 41.2 2.1E+02 0.0073 26.2 13.1 211 48-274 24-261 (337)
305 2ion_A PDCD4, programmed cell 40.6 60 0.002 26.2 6.0 62 353-414 13-79 (152)
306 2wvi_A Mitotic checkpoint seri 40.5 1.5E+02 0.0051 24.2 9.4 54 398-451 78-132 (164)
307 3jxi_A Vanilloid receptor-rela 37.8 1.2E+02 0.0043 26.4 8.7 115 52-172 8-161 (260)
308 2zu6_B Programmed cell death p 37.7 2.4E+02 0.0083 25.8 16.0 26 253-278 7-32 (307)
309 2nsz_A Programmed cell death p 37.3 1.4E+02 0.0049 23.1 10.7 63 253-315 11-79 (129)
310 3bqo_A Telomeric repeat-bindin 36.5 1.9E+02 0.0066 24.3 12.3 71 466-536 94-171 (211)
311 3ljn_A Hypothetical protein; a 36.0 2.1E+02 0.0072 26.6 10.4 180 355-541 56-266 (364)
312 2ion_A PDCD4, programmed cell 34.8 1.8E+02 0.006 23.4 10.7 64 252-315 12-81 (152)
313 3aji_A 26S proteasome non-ATPa 34.7 2.1E+02 0.0071 24.2 11.3 112 51-173 8-128 (231)
314 4aez_C MAD3, mitotic spindle c 34.5 1.2E+02 0.0042 26.1 7.3 53 397-449 131-184 (223)
315 1n11_A Ankyrin; clathrin, BAND 34.4 2.5E+02 0.0087 26.9 11.0 207 153-376 17-236 (437)
316 2r9g_A AAA ATPase, central reg 34.4 2.1E+02 0.0072 24.2 9.2 43 386-429 17-62 (204)
317 4gq2_M Nucleoporin NUP120; bet 34.3 2.3E+02 0.0078 31.1 11.3 51 421-476 816-866 (950)
318 4g8k_A 2-5A-dependent ribonucl 33.4 2.8E+02 0.0096 25.3 15.0 81 358-450 245-329 (337)
319 1oyz_A Hypothetical protein YI 32.9 2.6E+02 0.0088 24.7 22.0 18 347-364 140-157 (280)
320 3aji_A 26S proteasome non-ATPa 32.9 1.4E+02 0.0047 25.5 7.9 84 83-173 9-95 (231)
321 2pnn_A Transient receptor pote 32.3 1.3E+02 0.0044 26.7 7.8 18 89-106 22-39 (273)
322 3eu9_A Huntingtin-interacting 32.1 2.3E+02 0.0079 23.9 10.2 48 123-175 17-66 (240)
323 2fe3_A Peroxide operon regulat 32.0 1.6E+02 0.0053 23.3 7.3 45 184-228 26-70 (145)
324 4gq2_M Nucleoporin NUP120; bet 31.6 3.2E+02 0.011 29.9 11.9 52 52-104 816-867 (950)
325 3ygs_P Procaspase 9; apoptosis 31.6 35 0.0012 25.0 3.0 37 60-96 51-87 (97)
326 1ya0_A SMG-7 transcript varian 31.5 1.2E+02 0.0041 30.2 7.8 50 490-539 160-209 (497)
327 2fe3_A Peroxide operon regulat 31.4 72 0.0025 25.3 5.2 34 81-114 25-58 (145)
328 2xig_A Ferric uptake regulatio 30.9 1.5E+02 0.0052 23.6 7.1 44 185-228 32-75 (150)
329 3ljn_A Hypothetical protein; a 30.9 1.4E+02 0.0049 27.8 8.2 18 257-274 178-195 (364)
330 2rfa_A Transient receptor pote 30.6 1.9E+02 0.0064 24.6 8.4 149 84-247 7-184 (232)
331 3bu8_A Telomeric repeat-bindin 30.2 2.6E+02 0.0089 23.9 9.3 22 492-513 124-145 (235)
332 1wgl_A TOLL-interacting protei 29.5 53 0.0018 21.4 3.2 47 503-550 11-57 (59)
333 4b4t_S RPN3, 26S proteasome re 29.4 1.2E+02 0.004 30.3 7.1 61 416-476 232-296 (523)
334 4ets_A Ferric uptake regulatio 27.6 1.2E+02 0.0042 24.6 6.0 43 221-263 39-83 (162)
335 2o03_A Probable zinc uptake re 27.4 94 0.0032 24.1 5.1 47 81-127 14-60 (131)
336 2o03_A Probable zinc uptake re 26.8 1.3E+02 0.0044 23.3 5.8 47 184-230 15-61 (131)
337 3ctd_A Putative ATPase, AAA fa 26.4 3E+02 0.01 23.4 8.5 47 383-429 35-84 (213)
338 4aez_C MAD3, mitotic spindle c 25.6 2.8E+02 0.0097 23.9 8.0 49 500-548 132-182 (223)
339 1oyz_A Hypothetical protein YI 25.3 3.5E+02 0.012 23.8 23.7 17 348-364 205-221 (280)
340 2b7e_A PRE-mRNA processing pro 25.2 67 0.0023 20.9 3.0 30 295-324 2-31 (59)
341 1ug3_A EIF4GI, eukaryotic prot 24.9 1.9E+02 0.0065 26.9 7.6 25 453-477 144-168 (339)
342 4b4t_S RPN3, 26S proteasome re 24.6 1.9E+02 0.0064 28.9 7.6 66 450-515 231-303 (523)
343 2xig_A Ferric uptake regulatio 24.4 1E+02 0.0035 24.6 4.9 58 103-161 18-75 (150)
344 3mwm_A ZUR, putative metal upt 24.0 88 0.003 24.6 4.4 46 81-126 17-62 (139)
345 3mwm_A ZUR, putative metal upt 23.7 1.1E+02 0.0039 23.9 5.0 46 184-229 18-63 (139)
346 4ets_A Ferric uptake regulatio 23.7 87 0.003 25.5 4.4 58 103-161 24-83 (162)
347 3pvs_A Replication-associated 23.4 5.2E+02 0.018 25.1 12.4 104 109-228 191-304 (447)
348 2etb_A Transient receptor pote 22.7 1.5E+02 0.005 25.9 6.2 26 86-111 8-33 (256)
349 3ygs_P Procaspase 9; apoptosis 22.5 1.3E+02 0.0043 21.9 4.6 38 363-400 51-88 (97)
350 3eyy_A Putative iron uptake re 22.5 1.7E+02 0.0057 23.2 5.8 44 184-228 23-66 (145)
351 3bge_A Predicted ATPase; struc 22.2 3.5E+02 0.012 22.8 8.5 44 386-429 10-56 (201)
352 1bd8_A P19INK4D CDK4/6 inhibit 21.8 1.3E+02 0.0046 23.5 5.3 150 115-275 2-156 (156)
353 2f8y_A Notch homolog 1, transl 21.8 3.5E+02 0.012 22.5 9.8 112 51-173 27-147 (223)
354 3qil_A Clathrin heavy chain 1; 21.4 30 0.001 26.5 0.9 70 55-132 15-84 (125)
355 2zu6_B Programmed cell death p 21.3 4.7E+02 0.016 23.8 9.7 63 253-315 170-238 (307)
356 3eyy_A Putative iron uptake re 21.2 1E+02 0.0036 24.4 4.3 34 80-114 21-54 (145)
357 3qye_A TBC1 domain family memb 20.6 4.9E+02 0.017 23.8 10.8 47 200-246 209-255 (331)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-41 Score=362.10 Aligned_cols=484 Identities=11% Similarity=-0.016 Sum_probs=403.1
Q ss_pred HHHHccCChhHHHHhhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHHH
Q 007288 54 KSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAAL 133 (609)
Q Consensus 54 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 133 (609)
..+.+.|.+..+...|+.++.+++..|+.++..+.+.|++++|..+|++|.. ..|+..++..++.+|...|++++|..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 3456778888999999998888999999999999999999999999999985 56788999999999999999999999
Q ss_pred HHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCC-------------------ChhhHHHHHHHHHhcCC
Q 007288 134 VHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK-------------------NDVSWTTLITGYAHSGN 194 (609)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~ 194 (609)
+++.+... +++..+++.++.+|.+.| ++++|.++|+++... +..+|+.++.+|.+.|+
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLY-DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTT-CHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHh-hHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence 99988643 578899999999999999 999999999965433 37899999999999999
Q ss_pred hhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhH--HHH-HHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 007288 195 GYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG--KLI-HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQY 271 (609)
Q Consensus 195 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a--~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 271 (609)
+++|+++|++|...+.. +...+..+...+...+..+.+ ..+ +..+...+..+...+|+.++..|.+.|++++|.++
T Consensus 216 ~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 216 FDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 99999999999886422 444555554443333222221 111 44444444455566788889999999999999999
Q ss_pred HHhcCC--CChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCc
Q 007288 272 FDEMTE--KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348 (609)
Q Consensus 272 ~~~~~~--~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 348 (609)
|+++.+ ++..+|+.++.+|.+.| .++|..+|+++.+.+ +.+..++..++.++.+.|+.++|..+++.+.+.. +.+
T Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 372 (597)
T 2xpi_A 295 LSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK 372 (597)
T ss_dssp HHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred HHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-ccc
Confidence 999988 78999999999999999 999999999999765 3377889999999999999999999999998664 567
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007288 349 LALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTAC 425 (609)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 425 (609)
..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 88999999999999999999999998863 467899999999999999999999999999863 44778999999999
Q ss_pred hccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC--HhhHHHHHHHHHhCC
Q 007288 426 SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-------PFKPD--ESVWGPLLGACKEHR 496 (609)
Q Consensus 426 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~~ 496 (609)
.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|+++|+++ +..|+ ..+|..++.+|.+.|
T Consensus 452 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 99999999999999997655 347889999999999999999999999988 45787 689999999999999
Q ss_pred ChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 497 LPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 497 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
++++|...++++++.+|++..+|..++.+|.+.|++++|.++++++.+..+
T Consensus 531 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999988544
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-39 Score=346.91 Aligned_cols=479 Identities=8% Similarity=0.005 Sum_probs=409.2
Q ss_pred CCCChhHHhHHHHHHHccCChhHHHHhhccCC--CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHH
Q 007288 42 PKGPSILATNLIKSYFDEGLIEEARTLFDEMP--ERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119 (609)
Q Consensus 42 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 119 (609)
|.+++..|+.++..|.+.|++++|+.+|+++. .|+..+|+.++.+|.+.|++++|..+|+.+.. ..++..+++.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~ 157 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAA 157 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHH
Confidence 45788999999999999999999999999986 47888999999999999999999999999865 367889999999
Q ss_pred HHhhCCCChHHHHHHHHHHHHh---------------CCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCC---Chhh
Q 007288 120 KACKGMKSLSNAALVHGMAIKE---------------GLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK---NDVS 181 (609)
Q Consensus 120 ~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~---~~~~ 181 (609)
.+|.+.|++++|.++|+++... +.+.+..+|+.++.+|.+.| ++++|.+.|+++.+. +...
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~ 236 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS-NFDRAKECYKEALMVDAKCYEA 236 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCchhhHH
Confidence 9999999999999999853211 12235789999999999999 999999999998653 3445
Q ss_pred HHHHHHHHHhcCChhhHHH--H-HHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHH
Q 007288 182 WTTLITGYAHSGNGYGGLG--V-FKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDM 258 (609)
Q Consensus 182 ~~~li~~~~~~g~~~~a~~--~-~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 258 (609)
+..+...+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++++.+.+. +++..+++.++.+
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 5555554443333222211 1 555555555566667778888899999999999999998876 5889999999999
Q ss_pred HHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHH
Q 007288 259 YCRFDCLSDANQYFDEMTE---KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334 (609)
Q Consensus 259 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 334 (609)
|.+.|++++|..+|+++.+ .+..+|+.++.++.+.| .++|..+++++.... +.+..++..+...+.+.|++++|.
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHH
Confidence 9999999999999999853 36788999999999999 999999999998643 457889999999999999999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007288 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411 (609)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 411 (609)
.+|+++.+.. +.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+..
T Consensus 394 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 471 (597)
T 2xpi_A 394 RYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF- 471 (597)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 9999998864 45678999999999999999999999998763 477899999999999999999999999999863
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhc----CCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHh
Q 007288 412 RPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDY----NVNPN--KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DES 483 (609)
Q Consensus 412 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 483 (609)
+.+..+|..++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++ ...| +..
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 551 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN 551 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence 447889999999999999999999999999665 66777 789999999999999999999999987 3345 788
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 007288 484 VWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA 528 (609)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 528 (609)
+|..+..+|.+.|++++|...++++++++|+++..+..++.+|..
T Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 552 VHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999888753
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=7e-28 Score=245.99 Aligned_cols=210 Identities=10% Similarity=0.084 Sum_probs=163.9
Q ss_pred hHHHHHHHHHHCCCCCCHh-hHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 007288 197 GGLGVFKEMLLEGVEMNPY-SFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM 275 (609)
Q Consensus 197 ~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 275 (609)
.+..+.+++.+.++.+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 3455556676666665543 47778888888888888888888888888888888888888888876653321
Q ss_pred CCCChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHH
Q 007288 276 TEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354 (609)
Q Consensus 276 ~~~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 354 (609)
.+.+ .++|.++|++|...|+.||..||+++|.+|++.|+++.|.++|++|.+.|+.||..+|++
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 1233 578889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 007288 355 LIDMYAKCGNISDSQKIFSEMS----DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHA 428 (609)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 428 (609)
+|.+|++.|++++|.++|++|. .||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999888888888888888886 4788888888888888888888888888888888888888888888877763
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=5.7e-25 Score=220.68 Aligned_cols=373 Identities=9% Similarity=0.032 Sum_probs=230.2
Q ss_pred HhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCChhh
Q 007288 121 ACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW---KNDVSWTTLITGYAHSGNGYG 197 (609)
Q Consensus 121 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 197 (609)
.+.+.|++++|.+.+..+.+..+. +...+..+...+...| ++++|...++.... .+..+|..+...+.+.|++++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCR-RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 344555666666665555554322 2233334444444444 55555444443321 233444444455555555555
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 007288 198 GLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE 277 (609)
Q Consensus 198 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 277 (609)
|++.|+++.... +.+..+|..+..++...|++++|...++.+.+.. +.+..++..+...+...|+
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~------------- 150 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGR------------- 150 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSC-------------
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccC-------------
Confidence 555554444431 1122334444444444444444444444444432 2223333334444444444
Q ss_pred CChhHHHHHHHHHHhCCchHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007288 278 KDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALID 357 (609)
Q Consensus 278 ~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 357 (609)
.++|...|+++.... +.+..++..+...+...|+++.|...++++.+.+ +.+...+..+..
T Consensus 151 -----------------~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 211 (388)
T 1w3b_A 151 -----------------LEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGN 211 (388)
T ss_dssp -----------------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 444444444444321 1234556666666666666666666666666654 334556667777
Q ss_pred HHHhcCCHHHHHHHHHhcC--CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 007288 358 MYAKCGNISDSQKIFSEMS--DR-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434 (609)
Q Consensus 358 ~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 434 (609)
++...|++++|...|++.. .| +..++..+..+|...|++++|++.|+++.+.+ +.+..++..+...+.+.|++++|
T Consensus 212 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 290 (388)
T 1w3b_A 212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEA 290 (388)
T ss_dssp HHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 7777777777777777665 23 45677788888888888888888888888742 22456788888888888888888
Q ss_pred HHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccC
Q 007288 435 LKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLK 512 (609)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 512 (609)
...++++.+.. +.+..++..+...+.+.|++++|.+.++++ ...| +..++..+..++.+.|++++|...+++++++.
T Consensus 291 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 291 EDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 88888886654 456778888888888888888888888877 4445 46677888888888888888888888888888
Q ss_pred CCCcchHHHHHHHHHhcCC
Q 007288 513 PNMMGTYIILSNIYAAEGK 531 (609)
Q Consensus 513 p~~~~~~~~l~~~~~~~g~ 531 (609)
|++...|..++.++...|+
T Consensus 370 p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 370 PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHhHHHHHHHccC
Confidence 8888888888888877663
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=1.1e-24 Score=218.57 Aligned_cols=353 Identities=11% Similarity=0.062 Sum_probs=303.6
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 007288 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264 (609)
Q Consensus 185 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 264 (609)
+...+.+.|++++|.+.+.++.... +.+...+..+...+...|++++|...++...+.. +.+..+|..+..+|.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3456778899999999998887753 2244556667777888999999999999888874 6678899999999999999
Q ss_pred HHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCH-HhHHHHHHHHHhhccHHHHHHHHHH
Q 007288 265 LSDANQYFDEMTE--K-DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNC-FTFTSIIAACATLAALSCGQQVHAG 339 (609)
Q Consensus 265 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~ 339 (609)
+++|...|+++.+ | +...|..+..++...| .++|...|+++.+. .|+. ..+..+...+...|++++|...+..
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999998753 3 4567899999999999 99999999998875 3544 4566677788889999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CH
Q 007288 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--R-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP-DR 415 (609)
Q Consensus 340 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~ 415 (609)
+.+.. +.+..++..+..++.+.|++++|...|+++.+ | +...|..+...+...|++++|+..+++..+. .| +.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCH
Confidence 99875 44678899999999999999999999999873 3 4568889999999999999999999999884 44 46
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHhhHHHHHHHHH
Q 007288 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-P-FKPDESVWGPLLGACK 493 (609)
Q Consensus 416 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~ 493 (609)
.++..+...+...|++++|...|+++.+.+ +.+..+|..+...+.+.|++++|++.++++ . ..++..++..+...+.
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence 789999999999999999999999997754 335778999999999999999999999988 2 2346788999999999
Q ss_pred hCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 494 EHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 494 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
+.|++++|...++++++..|++..++..++.+|.+.|++++|...++++.+.
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999874
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=4.7e-27 Score=239.88 Aligned_cols=196 Identities=14% Similarity=0.215 Sum_probs=155.6
Q ss_pred HHHHHHhcCCC-----ChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhc---------cHHH
Q 007288 268 ANQYFDEMTEK-----DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLA---------ALSC 332 (609)
Q Consensus 268 A~~~~~~~~~~-----~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~---------~~~~ 332 (609)
+..+.+.+.+. ....++.+|.+|++.| .++|+++|++|.+.|+.||..||+++|.+|++.+ +++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34444555432 2345788888888888 8888899998888888889889988888887654 4678
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007288 333 GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS----DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408 (609)
Q Consensus 333 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 408 (609)
|.++|++|...|+.||..+|++||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888886 47888888888888888888888888888888
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc
Q 007288 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463 (609)
Q Consensus 409 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 463 (609)
.|+.||..||+.||.+|++.|++++|.+++++|.+.|..|+..+|+.++..|...
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888888888888888888887654
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.8e-22 Score=208.01 Aligned_cols=394 Identities=8% Similarity=-0.064 Sum_probs=314.1
Q ss_pred cchhhHHHHHHHhcCCCHHHHHHHHccCCC--CChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 007288 147 IYVENSLMDVYATCCISMDNARLVFNDMKW--KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224 (609)
Q Consensus 147 ~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 224 (609)
...+..+...+.+.| ++++|...|+++.. |+...|..+..++.+.|++++|+..++++.+.+ +.+..++..+..++
T Consensus 6 a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNK-KYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-cHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 345667778888888 99999999988753 688889999999999999999999999998864 33567888899999
Q ss_pred HccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHH-------------------------------
Q 007288 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFD------------------------------- 273 (609)
Q Consensus 225 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~------------------------------- 273 (609)
...|++++|...|+.+.+.+ +++......++..+.+......+.+.+.
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 99999999999999998876 4444444444444443322222222221
Q ss_pred -------hcCC---------C-ChhHHHHHHHHHHh---CC-chHHHHHHHHhHH-----CCCCC--------CHHhHHH
Q 007288 274 -------EMTE---------K-DLITWNTIIAGYEK---SG-SSECLNMFSKMKS-----ERFSP--------NCFTFTS 319 (609)
Q Consensus 274 -------~~~~---------~-~~~~~~~li~~~~~---~~-~~~a~~~~~~m~~-----~~~~p--------~~~t~~~ 319 (609)
.... + +...+......+.. .| +++|...|+++.. ....| +...+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 1100 1 13334444444443 77 9999999999887 31122 3456778
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCH
Q 007288 320 IIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHG 396 (609)
Q Consensus 320 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 396 (609)
+...+...|+++.|...++.+.+.... ...+..+..+|...|++++|...++.+.+ .+...+..+...+...|++
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 888899999999999999999988644 88889999999999999999999998764 3667889999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007288 397 KEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476 (609)
Q Consensus 397 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 476 (609)
++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+.+.|++++|...++++
T Consensus 321 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999863 3356788889999999999999999999997654 336778889999999999999999999887
Q ss_pred ----CCCCC----HhhHHHHHHHHHh---CCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 477 ----PFKPD----ESVWGPLLGACKE---HRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 477 ----~~~p~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
+..++ ...+..+..++.. .|++++|...++++++..|++..++..++.+|.+.|++++|...+++..+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 22222 3388888899999 999999999999999999999999999999999999999999999999885
Q ss_pred CC
Q 007288 546 GS 547 (609)
Q Consensus 546 ~~ 547 (609)
..
T Consensus 479 ~~ 480 (514)
T 2gw1_A 479 AR 480 (514)
T ss_dssp CS
T ss_pred cc
Confidence 44
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4.2e-22 Score=207.72 Aligned_cols=443 Identities=11% Similarity=-0.005 Sum_probs=267.2
Q ss_pred hHHhHHHHHHHccCChhHHHHhhccCC--CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhC
Q 007288 47 ILATNLIKSYFDEGLIEEARTLFDEMP--ERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124 (609)
Q Consensus 47 ~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 124 (609)
..+..+...+.+.|++++|+..|+++. .|+..+|..+..++.+.|++++|...|+++.+.+. .+...+..+..++..
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHH
Confidence 345556666666777777777776664 35666666666677777777777777776666431 234566666666666
Q ss_pred CCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCC----CChhhHHHHHHHHHhcCChhhHHH
Q 007288 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW----KNDVSWTTLITGYAHSGNGYGGLG 200 (609)
Q Consensus 125 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~ 200 (609)
.|++++|...++.+.+.+. ++......++..+.... ....+.+.+..+.. ++...++.-...............
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQ-AMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHH-HHHHHTTC---------------------------CCCCHHH
T ss_pred HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 7777777777766666553 23333333333333322 22222222221111 111111111111111111111111
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHh---cCCHHHHHHHHHhcCC
Q 007288 201 VFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR---FDCLSDANQYFDEMTE 277 (609)
Q Consensus 201 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 277 (609)
+...+......++ .. ...-+.+...+......+.. .|++++|...|+++.+
T Consensus 164 ~~~~~~~~~~~~~----------------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 217 (514)
T 2gw1_A 164 MASFFGIFKPELT----------------FA----------NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR 217 (514)
T ss_dssp HHHHHTTSCCCCC----------------CS----------SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHH----------------HH----------HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Confidence 1111111110000 00 00001112222223332222 4555555555554432
Q ss_pred ----------------C-ChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHH
Q 007288 278 ----------------K-DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339 (609)
Q Consensus 278 ----------------~-~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 339 (609)
+ +...+..+...+...| +++|...|+++.... |+...+..+...+...|+++.|...++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 295 (514)
T 2gw1_A 218 LFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDK 295 (514)
T ss_dssp HHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHH
T ss_pred HhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 1 2345556666666677 777777777766643 3366667777777777888888888777
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007288 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI 416 (609)
Q Consensus 340 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 416 (609)
+.+.. +.+..++..+..+|...|++++|...|+.+.+ .+...+..+...+...|++++|...++++.+.. +.+..
T Consensus 296 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 373 (514)
T 2gw1_A 296 ALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPE 373 (514)
T ss_dssp HHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSH
T ss_pred HhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHH
Confidence 77654 34566777788888888888888888887652 356678888888899999999999999988752 33456
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhcCCC-CC----hhHHHHHHHHHhh---cCCHHHHHHHHHhC-CCCC-CHhhHH
Q 007288 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNVN-PN----KEIYGCVVDLLGR---AGRVKEAYELIKSM-PFKP-DESVWG 486 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~ 486 (609)
++..+...+...|++++|...++.+.+.... ++ ...+..+...+.. .|++++|.+.++++ ...| +...+.
T Consensus 374 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 453 (514)
T 2gw1_A 374 VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKI 453 (514)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 8888888999999999999999988543211 12 3378889999999 99999999999887 3334 567788
Q ss_pred HHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHH
Q 007288 487 PLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522 (609)
Q Consensus 487 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 522 (609)
.+..++.+.|++++|...+++++++.|.+...+..+
T Consensus 454 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 454 GLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 888999999999999999999999999877666655
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=6.7e-21 Score=195.04 Aligned_cols=336 Identities=12% Similarity=0.035 Sum_probs=263.8
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHH
Q 007288 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILD 257 (609)
Q Consensus 178 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 257 (609)
+...|..+...+.+.|++++|+.+|+++.... +.+..++..+..++...|++++|...++.+.+.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 56678888888899999999999999888753 3467788888888888999999999999888875 556778888888
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC---h---hHHHHHHHHHHhCCchHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHH
Q 007288 258 MYCRFDCLSDANQYFDEMTEKD---L---ITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALS 331 (609)
Q Consensus 258 ~~~~~g~~~~A~~~~~~~~~~~---~---~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 331 (609)
+|.+.|++++|...|+++.+.+ . ..|..+...+.. ..+..+...+...|+++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------------~~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM----------------------QRLRSQALNAFGSGDYT 160 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----------------------HHHHHHHHHHHHcCCHH
Confidence 8888888888888888875422 2 344444333211 12223344566778888
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007288 332 CGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408 (609)
Q Consensus 332 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 408 (609)
.|...++.+.+.. +.+..++..+..+|.+.|++++|...|+.+.+ .+..+|..+..+|...|++++|+..|+++.+
T Consensus 161 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 161 AAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888887764 45677788888889999999999988888763 4677888899999999999999999999987
Q ss_pred CCCCCCH-HHHHHH------------HHHHhccCCHHHHHHHHHHhhhcCCCCC-----hhHHHHHHHHHhhcCCHHHHH
Q 007288 409 SGVRPDR-IVFMAV------------LTACSHAGLVDEGLKYFKSMNDYNVNPN-----KEIYGCVVDLLGRAGRVKEAY 470 (609)
Q Consensus 409 ~g~~p~~-~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~ 470 (609)
. .|+. ..+..+ ...|...|++++|..+|+.+.+.. |+ ...+..+...+.+.|++++|+
T Consensus 240 ~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 240 L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred h--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 4 4443 344443 788999999999999999997644 33 457888999999999999999
Q ss_pred HHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHH------------HHHhcC-----C
Q 007288 471 ELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN------------IYAAEG-----K 531 (609)
Q Consensus 471 ~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~------------~~~~~g-----~ 531 (609)
+.++++ ...| +...|..+..+|...|++++|...+++++++.|++...+..++. .|...| +
T Consensus 316 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~ 395 (450)
T 2y4t_A 316 RVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCC
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCC
Confidence 999987 4445 67889999999999999999999999999999999999998884 455556 5
Q ss_pred hHHHHHHHHHH
Q 007288 532 WEEFAKFRKIM 542 (609)
Q Consensus 532 ~~~A~~~~~~m 542 (609)
.+++.+.++++
T Consensus 396 ~~~~~~~y~~~ 406 (450)
T 2y4t_A 396 KQEIIKAYRKL 406 (450)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66777777763
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=2.1e-21 Score=203.57 Aligned_cols=428 Identities=11% Similarity=-0.021 Sum_probs=275.7
Q ss_pred cccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHH
Q 007288 77 VVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDV 156 (609)
Q Consensus 77 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 156 (609)
...|..+...+.+.|++++|+..|+++.+... .+...+..+..++...|++++|.+.++.+++.++. +..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 34567777788888888888888888877532 25667777778888888888888888888776543 45566666666
Q ss_pred HHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHH
Q 007288 157 YATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLI 236 (609)
Q Consensus 157 ~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 236 (609)
+...| ++++|...|+.+ ..+....+..+..+...+....|...++++..... +.
T Consensus 103 ~~~~g-~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~--~~---------------------- 156 (537)
T 3fp2_A 103 NESLG-NFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDE--GR---------------------- 156 (537)
T ss_dssp HHHHT-CHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-----------------------------
T ss_pred HHHcC-CHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCc--cc----------------------
Confidence 66666 666666666432 22222222233344444444556666555533210 00
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh---HHHHHHHHHH--------hCC-chHHHHHHHH
Q 007288 237 HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI---TWNTIIAGYE--------KSG-SSECLNMFSK 304 (609)
Q Consensus 237 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~--------~~~-~~~a~~~~~~ 304 (609)
.....|+ ...+..+....+.+.+...+......+.. ....+...+. ..+ +++|..+|++
T Consensus 157 -----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~ 227 (537)
T 3fp2_A 157 -----GSQVLPS----NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHS 227 (537)
T ss_dssp -------CCCCC----HHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHH
T ss_pred -----cccccch----HhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 0001111 12223333444444444444443332221 1222221111 113 5667777777
Q ss_pred hHHCCCCCC--------HHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 007288 305 MKSERFSPN--------CFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376 (609)
Q Consensus 305 m~~~~~~p~--------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 376 (609)
+.+.. |+ ..++..+...+...|+++.|...+..+.+.. |+...+..+...|...|++++|...|+.+.
T Consensus 228 ~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 303 (537)
T 3fp2_A 228 LLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAV 303 (537)
T ss_dssp HHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHH
T ss_pred HHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 66532 33 2245555566677788888888888888764 346777778888888888888888888776
Q ss_pred C---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHH
Q 007288 377 D---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIY 453 (609)
Q Consensus 377 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 453 (609)
+ .+..+|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+
T Consensus 304 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 381 (537)
T 3fp2_A 304 DLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVP 381 (537)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHH
T ss_pred ccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 3 356678888888888888889988888888753 2245678888888888899999999888886654 3356678
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC----CCCC----CHhhHHHHHHHHHhC----------CChHHHHHHHHHHhccCCCC
Q 007288 454 GCVVDLLGRAGRVKEAYELIKSM----PFKP----DESVWGPLLGACKEH----------RLPNLGKLAALRVLDLKPNM 515 (609)
Q Consensus 454 ~~l~~~~~~~g~~~~A~~~~~~~----~~~p----~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~ 515 (609)
..+...+...|++++|.+.++++ +..+ ....+..+..++... |++++|...++++++..|++
T Consensus 382 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 461 (537)
T 3fp2_A 382 TFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS 461 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCC
Confidence 88888888889999988888876 1111 122233444566666 88999999999999999988
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 516 MGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
...+..++.+|...|++++|.+.+++..+...
T Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 462 EQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 88889999999999999999999988887543
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=7.4e-20 Score=187.27 Aligned_cols=359 Identities=11% Similarity=0.006 Sum_probs=193.7
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 007288 149 VENSLMDVYATCCISMDNARLVFNDMKW---KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225 (609)
Q Consensus 149 ~~~~ll~~~~~~g~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 225 (609)
.+..+...+.+.| ++++|..+|+.+.+ .+...|..+...+...|++++|+..|+++.+.+. .+...+..+...+.
T Consensus 28 ~~~~~~~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 28 KHLELGKKLLAAG-QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHH
Confidence 3444444444444 44444444444321 2445555566666666666666666666655432 23455556666666
Q ss_pred ccCCchhHHHHHHHHHHhCCCCCh---hHHHHH------------HHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHH
Q 007288 226 STGWVSFGKLIHAAVIKHGFGSNL---PVMNSI------------LDMYCRFDCLSDANQYFDEMTE---KDLITWNTII 287 (609)
Q Consensus 226 ~~g~~~~a~~~~~~~~~~g~~~~~---~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 287 (609)
..|++++|...++.+.+.. +.+. .++..+ ...+.+.|++++|...|+.+.+ .+...+..+.
T Consensus 106 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 184 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRA 184 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 6666666666666665542 2222 344444 3345666666666666665532 2444555555
Q ss_pred HHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 007288 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNIS 366 (609)
Q Consensus 288 ~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 366 (609)
..|...| .++|...|+++.+.. +.+..++..+...+...|+++.|...++.+.+.. +.+...+..+... +
T Consensus 185 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~----~--- 255 (450)
T 2y4t_A 185 ECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV----K--- 255 (450)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH----H---
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHH----H---
Confidence 5555555 555555555554431 2234455555555555555555555555554432 1111112111000 0
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007288 367 DSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD-----RIVFMAVLTACSHAGLVDEGLKYFKSM 441 (609)
Q Consensus 367 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~ 441 (609)
....+..+...+...|++++|...|+++.+. .|+ ...+..+...+.+.|++++|+..++.+
T Consensus 256 ------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 321 (450)
T 2y4t_A 256 ------------KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEV 321 (450)
T ss_dssp ------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 0001122256667777777777777777663 343 235666667777777777777777776
Q ss_pred hhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-hhHHHHHHH------------HHhCC-----ChHHHH
Q 007288 442 NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDE-SVWGPLLGA------------CKEHR-----LPNLGK 502 (609)
Q Consensus 442 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~------------~~~~~-----~~~~a~ 502 (609)
.+.. +.+...|..+..+|...|++++|.+.++++ ...|+. ..+..+..+ |...| +.+++.
T Consensus 322 ~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~ 400 (450)
T 2y4t_A 322 LQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEII 400 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHH
T ss_pred HHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHH
Confidence 5543 235666777777777777777777777766 445543 333333321 23333 566778
Q ss_pred HHHHH-HhccCCCCcc----------hHHHHHHHHHhcCChHH
Q 007288 503 LAALR-VLDLKPNMMG----------TYIILSNIYAAEGKWEE 534 (609)
Q Consensus 503 ~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 534 (609)
..+++ +++..|++.. .+..+..+|...|+.+.
T Consensus 401 ~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 401 KAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 88886 6777775322 44556666666665544
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.85 E-value=6.1e-19 Score=184.87 Aligned_cols=438 Identities=10% Similarity=0.004 Sum_probs=277.2
Q ss_pred ChhHHhHHHHHHHccCChhHHHHhhccCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 007288 45 PSILATNLIKSYFDEGLIEEARTLFDEMPE---RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121 (609)
Q Consensus 45 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 121 (609)
....+..+...+.+.|++++|++.|+++.+ .+..+|..+...+.+.|++++|++.|+++.+.+. .+...+..+..+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 356788899999999999999999998763 4677899999999999999999999999988542 256788889999
Q ss_pred hhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCC------ChhhHHHHHHHHHhcCCh
Q 007288 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK------NDVSWTTLITGYAHSGNG 195 (609)
Q Consensus 122 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~ 195 (609)
+...|++++|...++ ..... |+. .+..+..+...+ ....|...++.+... ........+..+....+.
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~--~~~--~~~~~~~~~~~~-~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLN--GDF--DGASIEPMLERN-LNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHH-HHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHcCCHHHHHHHHH-HHhcC--CCC--ChHHHHHHHHHH-HHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 999999999999996 33322 221 122233444444 667788888776542 222334445556666666
Q ss_pred hhHHHHHHHHHHCCCCCCHhhHHHHHH-HHHc--------cCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 007288 196 YGGLGVFKEMLLEGVEMNPYSFSIAVR-ACAS--------TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLS 266 (609)
Q Consensus 196 ~~a~~~~~~m~~~g~~p~~~t~~~ll~-~~~~--------~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 266 (609)
+.+...+..... ..+....+...+. .+.. .|++++|..+++.+.+.. +.+..++..+.
T Consensus 177 ~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~---------- 243 (537)
T 3fp2_A 177 HLEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAA---------- 243 (537)
T ss_dssp HHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHH----------
T ss_pred HHHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHH----------
Confidence 665554433322 1222222222221 1111 124555555555555432 12221111111
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Q 007288 267 DANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345 (609)
Q Consensus 267 ~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 345 (609)
.++..+...+...| +++|...|++.... .|+...+..+...+...|+++.|...+..+.+..
T Consensus 244 --------------~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 306 (537)
T 3fp2_A 244 --------------LALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN- 306 (537)
T ss_dssp --------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-
T ss_pred --------------HHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-
Confidence 12333334445555 55566666655553 3445566666666667777777777777766654
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007288 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422 (609)
Q Consensus 346 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 422 (609)
+.+..++..+..+|...|++++|...|+.+.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 385 (537)
T 3fp2_A 307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFA 385 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 33556677777777777777777777777652 345677777788888888888888888887752 33455777778
Q ss_pred HHHhccCCHHHHHHHHHHhhhcCC-----CCChhHHHHHHHHHhhc----------CCHHHHHHHHHhC-CCCC-CHhhH
Q 007288 423 TACSHAGLVDEGLKYFKSMNDYNV-----NPNKEIYGCVVDLLGRA----------GRVKEAYELIKSM-PFKP-DESVW 485 (609)
Q Consensus 423 ~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~ 485 (609)
..+...|++++|...++++.+... ......+..+...+.+. |++++|...++++ ...| +...+
T Consensus 386 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 465 (537)
T 3fp2_A 386 EILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAK 465 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHH
Confidence 888888888888888887743221 11233345556667777 8888888888877 2333 45677
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHH
Q 007288 486 GPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520 (609)
Q Consensus 486 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 520 (609)
..+..++...|++++|...+++++++.|.+.....
T Consensus 466 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 466 IGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 77888888888888888888888888886555433
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=2.7e-17 Score=162.41 Aligned_cols=306 Identities=11% Similarity=0.038 Sum_probs=220.0
Q ss_pred CHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHH
Q 007288 213 NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE---KDLITWNTIIAG 289 (609)
Q Consensus 213 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 289 (609)
|...+..+...+...|++++|...++.+.+.. +.+..++..+..++...|++++|...|+++.+ .+...|..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 45567778888888999999999999988875 55677888888889999999999988887653 355677777788
Q ss_pred HHhCC-chHHHHHHHHhHHCCCCC---CH-HhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 007288 290 YEKSG-SSECLNMFSKMKSERFSP---NC-FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGN 364 (609)
Q Consensus 290 ~~~~~-~~~a~~~~~~m~~~~~~p---~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 364 (609)
+...| .++|...|++.... .| +. ..+..+.... . ...+..+...+...|+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTC
T ss_pred HHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccC
Confidence 88888 88888888887764 34 22 2222221100 0 0112234556677777
Q ss_pred HHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007288 365 ISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441 (609)
Q Consensus 365 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 441 (609)
+++|...|+.+.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++..
T Consensus 136 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777777652 355667777777788888888888888877642 335567777777788888888888888877
Q ss_pred hhcCCCCChhHHH------------HHHHHHhhcCCHHHHHHHHHhC-CCCCCHh-----hHHHHHHHHHhCCChHHHHH
Q 007288 442 NDYNVNPNKEIYG------------CVVDLLGRAGRVKEAYELIKSM-PFKPDES-----VWGPLLGACKEHRLPNLGKL 503 (609)
Q Consensus 442 ~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-----~~~~l~~~~~~~~~~~~a~~ 503 (609)
.+... .+...+. .+...+.+.|++++|...++++ ...|+.. .+..+..++...|++++|..
T Consensus 215 ~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 215 LKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 55432 1222222 2356688889999999888877 3334422 24446678889999999999
Q ss_pred HHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 504 AALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 504 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
.++++++..|+++..+..++.+|...|++++|...+++..+..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9999999999888999999999999999999999999988743
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=3.4e-17 Score=161.72 Aligned_cols=324 Identities=10% Similarity=-0.002 Sum_probs=255.9
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHH
Q 007288 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILD 257 (609)
Q Consensus 178 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 257 (609)
|+..+..+...+...|++++|+..|+++..... .+..++..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 356788889999999999999999999988643 367788899999999999999999999999875 557789999999
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCh------hHHHHHHHHHHhCCchHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHH
Q 007288 258 MYCRFDCLSDANQYFDEMTEKDL------ITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALS 331 (609)
Q Consensus 258 ~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 331 (609)
++...|++++|...|++..+.+. ..+..+...+ ....+..+...+...|+++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------------------~~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD----------------------EMQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH----------------------HHHHHHHHHHHHHHccCHH
Confidence 99999999999999999865332 1222221110 0112344556677788888
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007288 332 CGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408 (609)
Q Consensus 332 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 408 (609)
.|...+..+.+.. +.+...+..+..++...|++++|...++.+.+ .+...+..+...+...|++++|...+++..+
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8888888887765 45667788888889999999999999888764 3567888888899999999999999999887
Q ss_pred CCCCCC-HHHHH------------HHHHHHhccCCHHHHHHHHHHhhhcCCCCCh----hHHHHHHHHHhhcCCHHHHHH
Q 007288 409 SGVRPD-RIVFM------------AVLTACSHAGLVDEGLKYFKSMNDYNVNPNK----EIYGCVVDLLGRAGRVKEAYE 471 (609)
Q Consensus 409 ~g~~p~-~~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~ 471 (609)
. .|+ ...+. .+...+.+.|++++|...++.+.+.... +. ..+..+...+...|++++|++
T Consensus 217 ~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 217 L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred h--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 4 333 23332 2366688999999999999999665432 22 235567889999999999999
Q ss_pred HHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 007288 472 LIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529 (609)
Q Consensus 472 ~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 529 (609)
.+++. ...| +...|..+..++...|++++|...++++++++|++...+..+..++...
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 99988 3345 6778888999999999999999999999999999888888887776543
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=5.5e-17 Score=158.28 Aligned_cols=283 Identities=11% Similarity=0.016 Sum_probs=192.6
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHH
Q 007288 247 SNLPVMNSILDMYCRFDCLSDANQYFDEMTE---KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIA 322 (609)
Q Consensus 247 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 322 (609)
.+..++..+...+...|++++|..+|+++.+ .+...+..++..+...| .++|...++++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 3444444455555555555555555555432 12233444444455555 555555555555432 224455666666
Q ss_pred HHHhhc-cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHH
Q 007288 323 ACATLA-ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKE 398 (609)
Q Consensus 323 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 398 (609)
.+...| +++.|...++.+.+.. +.+...+..+..++...|++++|...|+.+.+ .+...+..+...|...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence 677777 7777777777776654 33456677777778888888888888777652 245667777888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcC--------CCCChhHHHHHHHHHhhcCCHHHHH
Q 007288 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYN--------VNPNKEIYGCVVDLLGRAGRVKEAY 470 (609)
Q Consensus 399 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~ 470 (609)
|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. .+....++..+...+...|++++|+
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 888888888753 3355678888888888888888888888874431 1334567888888888889999888
Q ss_pred HHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHH-HhcCCh
Q 007288 471 ELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY-AAEGKW 532 (609)
Q Consensus 471 ~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 532 (609)
+.+++. ...| +...|..+..++...|++++|...+++++++.|++...+..++.++ ...|+.
T Consensus 257 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 257 DYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 888877 2233 5667778888888899999999999999999998888888888888 445554
No 16
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=1.8e-17 Score=161.15 Aligned_cols=283 Identities=11% Similarity=0.060 Sum_probs=119.2
Q ss_pred HccCChhHHHHhhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHH
Q 007288 57 FDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHG 136 (609)
Q Consensus 57 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 136 (609)
-+.|++++|.++++++.+|+ +|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 47788999999999997665 8999999999999999999999753 578899999999999999999999888
Q ss_pred HHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhh
Q 007288 137 MAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYS 216 (609)
Q Consensus 137 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 216 (609)
..++. .+++.+.+.++.+|.+.| +++++.++++. |+..+|+.+...|...|++++|...|..+ ..
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg-~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n 150 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTN-RLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN 150 (449)
T ss_dssp --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TC
T ss_pred HHHHh--CccchhHHHHHHHHHHhC-CHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hh
Confidence 88774 455788999999999999 99998888864 67779999999999999999999999977 47
Q ss_pred HHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCC-c
Q 007288 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-S 295 (609)
Q Consensus 217 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~ 295 (609)
|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. ..+.....++..|.+.| +
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCH
Confidence 888999999999999999988877 378889999999999999999977766654 34444456778888888 8
Q ss_pred hHHHHHHHHhHHCCCCCCHHhHHHHHHHHH--hhccHHHHHHHHHHHHHhCCCC------chhHHHHHHHHHHhcCCHHH
Q 007288 296 SECLNMFSKMKSERFSPNCFTFTSIIAACA--TLAALSCGQQVHAGIVRRGLDG------NLALANALIDMYAKCGNISD 367 (609)
Q Consensus 296 ~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~ 367 (609)
++|..+++...... +.-...|+-+...++ +.+++.+..+.|.. +.++++ +...|..++..|.+-++++.
T Consensus 224 eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 224 EELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 88888888776543 223334444444443 34444444444431 111222 34556666777777777776
Q ss_pred HHHHH
Q 007288 368 SQKIF 372 (609)
Q Consensus 368 A~~~~ 372 (609)
|....
T Consensus 301 A~~tm 305 (449)
T 1b89_A 301 AIITM 305 (449)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 17
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=2.4e-17 Score=160.30 Aligned_cols=347 Identities=10% Similarity=0.046 Sum_probs=153.2
Q ss_pred hcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHH
Q 007288 159 TCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHA 238 (609)
Q Consensus 159 ~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 238 (609)
+.| ++++|.+.++++..| .+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++
T Consensus 15 ~~~-~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIG-NLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Hcc-CHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 344 788888888888555 47888888888888888888888652 577788888888888888888888777
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhH
Q 007288 239 AVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTF 317 (609)
Q Consensus 239 ~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~ 317 (609)
..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...| +++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 76664 4557778888889999999888887775 366678888888888888 88888888876 378
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHH
Q 007288 318 TSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397 (609)
Q Consensus 318 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 397 (609)
..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 88888888888888888888877 367888888888888888888877766654 33333446788888899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh-hhcCCCC------ChhHHHHHHHHHhhcCCHHHHH
Q 007288 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNP------NKEIYGCVVDLLGRAGRVKEAY 470 (609)
Q Consensus 398 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~ 470 (609)
+|..+++...... +--...|+-|.-++++- ++++..+.++.. .+.+++| +...|.-++..|...++++.|.
T Consensus 225 Eai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 225 ELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 9999888887543 33445666666666654 333333333333 3444444 4677888899999999999888
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 007288 471 ELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIM 542 (609)
Q Consensus 471 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 542 (609)
..+-+-+ |+...-..+.....+-.+.+.--+...-.++..| ...+.|..++...=+...+..++++.
T Consensus 303 ~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p---~~l~~ll~~l~~~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 303 ITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYFSKV 369 (449)
T ss_dssp HHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred HHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhccCcHHHHHHHHHc
Confidence 8766542 2322223333444444444433333333333333 34555555555555555555554443
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=1e-15 Score=158.15 Aligned_cols=363 Identities=10% Similarity=-0.017 Sum_probs=247.9
Q ss_pred cchhhHHHHHHHh----cCCCHHHHHHHHccCCC-CChhhHHHHHHHHHh----cCChhhHHHHHHHHHHCCCCCCHhhH
Q 007288 147 IYVENSLMDVYAT----CCISMDNARLVFNDMKW-KNDVSWTTLITGYAH----SGNGYGGLGVFKEMLLEGVEMNPYSF 217 (609)
Q Consensus 147 ~~~~~~ll~~~~~----~g~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~ 217 (609)
...+..+...|.. .+ ++++|...|+...+ .+...+..|...|.. .++.++|++.|++..+.| +...+
T Consensus 39 ~~a~~~lg~~y~~g~~~~~-~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTK-DLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHHHcCCCCCc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 3344444444444 44 55555555554332 244555556666666 666677777776666654 44455
Q ss_pred HHHHHHHHc----cCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHH
Q 007288 218 SIAVRACAS----TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR----FDCLSDANQYFDEMTE-KDLITWNTIIA 288 (609)
Q Consensus 218 ~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~ 288 (609)
..+...+.. .+++++|...|+...+.| +...+..+...|.. .++.++|...|++..+ .+...+..+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 555555555 566777777777666654 45556666666665 6677777777766543 35556666666
Q ss_pred HHHh----CC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHh----hccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 007288 289 GYEK----SG-SSECLNMFSKMKSERFSPNCFTFTSIIAACAT----LAALSCGQQVHAGIVRRGLDGNLALANALIDMY 359 (609)
Q Consensus 289 ~~~~----~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 359 (609)
.|.. .+ .++|...|++..+.| +...+..+...+.. .++.++|..+++...+.| +...+..+..+|
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 6665 45 677777777776654 45556666666654 678888888888877654 345566677777
Q ss_pred Hh----cCCHHHHHHHHHhcCC-CCcchHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 007288 360 AK----CGNISDSQKIFSEMSD-RDLVTWTSMMIGYGAH-----GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429 (609)
Q Consensus 360 ~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 429 (609)
.. .++.++|...|+...+ .+...+..+...|... +++++|+..|++..+.| +...+..+...|...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLG 342 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSC
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Confidence 77 7888889888888765 3556777777788777 89999999999988865 4556667777776655
Q ss_pred ---CHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----CCCh
Q 007288 430 ---LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR----AGRVKEAYELIKSMPFKPDESVWGPLLGACKE----HRLP 498 (609)
Q Consensus 430 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~ 498 (609)
++++|+++|++..+.+ +...+..|...|.. .+++++|++.|++.-...+...+..|...|.. .++.
T Consensus 343 ~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~ 419 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDY 419 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 7889999999887754 67778888888888 78999999999887323366777888888887 8899
Q ss_pred HHHHHHHHHHhccCCC---CcchHHHHHHHHHh
Q 007288 499 NLGKLAALRVLDLKPN---MMGTYIILSNIYAA 528 (609)
Q Consensus 499 ~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 528 (609)
++|...++++.+.+|+ ++.....++.++..
T Consensus 420 ~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 420 VQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 9999999999998843 56666666665543
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=7.3e-15 Score=153.31 Aligned_cols=409 Identities=7% Similarity=-0.016 Sum_probs=255.3
Q ss_pred CcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCC--CChhhHHHHHHH
Q 007288 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW--KNDVSWTTLITG 188 (609)
Q Consensus 111 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~--~~~~~~~~li~~ 188 (609)
|...|..++.. ...|++++|..+++++++..+ .+...|..++..+.+.| ++++|..+|++... |+...|..++..
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P-~~~~~w~~~~~~~~~~~-~~~~a~~~~~ral~~~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQFP-SSGRFWKLYIEAEIKAK-NYDKVEKLFQRCLMKVLHIDLWKCYLSY 88 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 45566666663 556677777777777766432 24556666666666666 77777777766543 455555555532
Q ss_pred H-HhcCChhhHHH----HHHHHHH-CCCCCC-HhhHHHHHHHHHc---------cCCchhHHHHHHHHHHhCCCCC--hh
Q 007288 189 Y-AHSGNGYGGLG----VFKEMLL-EGVEMN-PYSFSIAVRACAS---------TGWVSFGKLIHAAVIKHGFGSN--LP 250 (609)
Q Consensus 189 ~-~~~g~~~~a~~----~~~~m~~-~g~~p~-~~t~~~ll~~~~~---------~g~~~~a~~~~~~~~~~g~~~~--~~ 250 (609)
. ...|+.+.|.+ +|+.... .|..|+ ...|...+..... .|+++.|..+|+..++. +.+ ..
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~--P~~~~~~ 166 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN--PMINIEQ 166 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS--CCTTHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc--hhhhHHH
Confidence 2 23455555544 4444433 243332 3334444433322 45555666666655541 111 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCC-chHHHHHHHHh------HHCC---CCCCH------
Q 007288 251 VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKM------KSER---FSPNC------ 314 (609)
Q Consensus 251 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~a~~~~~~m------~~~~---~~p~~------ 314 (609)
.|..........|. ..+..++. ...+ +..|..++..+ .+.. +.|+.
T Consensus 167 ~~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~ 228 (530)
T 2ooe_A 167 LWRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQ 228 (530)
T ss_dssp HHHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHH
T ss_pred HHHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHH
Confidence 22211111000000 00011110 0123 45565555542 1111 23331
Q ss_pred --HhHHHHHHHHHhh----ccH----HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCCHH-------HHHH
Q 007288 315 --FTFTSIIAACATL----AAL----SCGQQVHAGIVRRGLDGNLALANALIDMYAK-------CGNIS-------DSQK 370 (609)
Q Consensus 315 --~t~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~ 370 (609)
..|...+...... ++. +.+..+|++..... +.+...|..++..+.+ .|+++ +|..
T Consensus 229 ~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~ 307 (530)
T 2ooe_A 229 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 307 (530)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHH
Confidence 2333333222211 122 36777888887763 4567788888888775 79987 8999
Q ss_pred HHHhcCC---C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 007288 371 IFSEMSD---R-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR--IVFMAVLTACSHAGLVDEGLKYFKSMNDY 444 (609)
Q Consensus 371 ~~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 444 (609)
+|++..+ | +...|..++..+.+.|++++|..+|+++.+. .|+. ..|..++..+.+.|++++|..+|++..+.
T Consensus 308 ~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 308 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp HHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9998874 4 4678889999999999999999999999984 5542 47888888888999999999999999764
Q ss_pred CCCCChhHHHHHHHH-HhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcc----
Q 007288 445 NVNPNKEIYGCVVDL-LGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG---- 517 (609)
Q Consensus 445 ~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---- 517 (609)
. +.+...|...... +...|++++|..+|++. ...| +...|..++..+.+.|+.+.|..++++++...|.++.
T Consensus 386 ~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~ 464 (530)
T 2ooe_A 386 A-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 464 (530)
T ss_dssp T-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHH
T ss_pred c-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHH
Confidence 3 2233444332222 33689999999999977 3334 5788999999999999999999999999998775554
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 518 TYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
.|...+......|+.+.+..+.+++.+.-
T Consensus 465 lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 465 IWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 77778888888999999999999998743
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=1.1e-14 Score=150.26 Aligned_cols=351 Identities=11% Similarity=0.042 Sum_probs=296.4
Q ss_pred CChhhHHHHHHHHHh----cCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----cCCchhHHHHHHHHHHhCCCCC
Q 007288 177 KNDVSWTTLITGYAH----SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS----TGWVSFGKLIHAAVIKHGFGSN 248 (609)
Q Consensus 177 ~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~ 248 (609)
.+..++..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|...|+...+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 467778888888888 899999999999998874 56777778888887 899999999999998876 6
Q ss_pred hhHHHHHHHHHHh----cCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHh----CC-chHHHHHHHHhHHCCCCCCHHhHH
Q 007288 249 LPVMNSILDMYCR----FDCLSDANQYFDEMTEK-DLITWNTIIAGYEK----SG-SSECLNMFSKMKSERFSPNCFTFT 318 (609)
Q Consensus 249 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~-~~~a~~~~~~m~~~~~~p~~~t~~ 318 (609)
...+..|...|.. .+++++|...|++..+. +...+..|...|.. .+ .++|+..|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6777888888988 88999999999987654 66778888888876 56 899999999998865 677777
Q ss_pred HHHHHHHh----hccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CCcchHHHHHHH
Q 007288 319 SIIAACAT----LAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK----CGNISDSQKIFSEMSD-RDLVTWTSMMIG 389 (609)
Q Consensus 319 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~ 389 (609)
.+...+.. .++.++|...++...+.| +...+..+..+|.. .+++++|..+|+...+ .+...+..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888877 899999999999998875 55677788888886 8999999999998775 466677788888
Q ss_pred HHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----CCHHHHHHHHHHhhhcCCCCChhHHHHHHHHH
Q 007288 390 YGA----HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHA-----GLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLL 460 (609)
Q Consensus 390 ~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 460 (609)
|.. .+++++|+..|++..+.| +...+..+...|... +++++|...|++..+.+ +...+..+...|
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 338 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIY 338 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHH
Confidence 887 899999999999998765 456777777778776 89999999999997765 456777788888
Q ss_pred hhcC---CHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----CCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh----c
Q 007288 461 GRAG---RVKEAYELIKSMPFKPDESVWGPLLGACKE----HRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA----E 529 (609)
Q Consensus 461 ~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~ 529 (609)
...| ++++|++.|++.-...+...+..|...|.. .+++++|...++++.+.. ++..+..|+.+|.. .
T Consensus 339 ~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~ 416 (490)
T 2xm6_A 339 FRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVE 416 (490)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSC
T ss_pred HhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCC
Confidence 7766 789999999988333577888889899988 899999999999998865 47889999999998 8
Q ss_pred CChHHHHHHHHHHHhCCC
Q 007288 530 GKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 530 g~~~~A~~~~~~m~~~~~ 547 (609)
+++++|..+|++..+.+.
T Consensus 417 ~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 417 RDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHCCC
Confidence 999999999999998774
No 21
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=1.9e-14 Score=155.81 Aligned_cols=449 Identities=8% Similarity=0.031 Sum_probs=324.0
Q ss_pred CCChhHHhHHHHHHHccCChhHHHHhhccCCC--------CCcccHHHHHHHHHcCCChhHHH-----------HHHHHH
Q 007288 43 KGPSILATNLIKSYFDEGLIEEARTLFDEMPE--------RDVVSWTVMIAGYTSFNCHNQAW-----------TVFVEM 103 (609)
Q Consensus 43 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~-----------~~~~~m 103 (609)
.-|.+--+.++.-||...++--|.-.+++-.- ..-..|-...+-+++..+++.=- ++.++-
T Consensus 895 ~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv 974 (1630)
T 1xi4_A 895 RENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQV 974 (1630)
T ss_pred hccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence 44555556788889999998888887776321 01112333333333333322111 112111
Q ss_pred HHCC--CCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCC--CCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCCCh
Q 007288 104 VRNE--VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGL--EGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179 (609)
Q Consensus 104 ~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~~ 179 (609)
.... -..|+.-.....++|...|.+.++.+++++..-.+- .-+...-+.++....+. +..+..++.+....-+
T Consensus 975 ~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka--D~~Rv~eyI~kLd~~d- 1051 (1630)
T 1xi4_A 975 VQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA--DRTRVMEYINRLDNYD- 1051 (1630)
T ss_pred HHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh--ChhhHHHHHHHhhhcc-
Confidence 1110 112344456678888899999999999999884321 12335566677666665 5566666666655333
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 007288 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMY 259 (609)
Q Consensus 180 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 259 (609)
...+...+...|.+++|..+|++.. -.....+.++. ..+++++|.++.++. .+..+|..+..++
T Consensus 1052 --~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAq 1115 (1630)
T 1xi4_A 1052 --APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQ 1115 (1630)
T ss_pred --HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHH
Confidence 4557788889999999999999962 12222233332 678899999888854 3578899999999
Q ss_pred HhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHH
Q 007288 260 CRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338 (609)
Q Consensus 260 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 338 (609)
.+.|++++|++.|.+. .|...|..++.++.+.| +++|.+.|...++.. ++....+.+..+|++.++++....+.
T Consensus 1116 l~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1116 LQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred HhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH-
Confidence 9999999999999765 67788889999999999 999999999877654 34333445888999999888644443
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007288 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVF 418 (609)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 418 (609)
+ .++...+..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++. -+..+|
T Consensus 1191 ---~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aW 1253 (1630)
T 1xi4_A 1191 ---N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTW 1253 (1630)
T ss_pred ---h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHH
Confidence 1 345566777999999999999999999996 58999999999999999999999976 356889
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHH--h
Q 007288 419 MAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD-ESVWGPLLGACK--E 494 (609)
Q Consensus 419 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~--~ 494 (609)
..+-.+|...|++..|..+... +..+...+..++..|.+.|.+++|+++++.. +..|. ...|.-|..++. +
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCC
Confidence 9999999999999888887653 3446777889999999999999999999776 55543 334544444444 4
Q ss_pred CCChHHHHHHHHHHhccCC-----CCcchHHHHHHHHHhcCChHHHHH
Q 007288 495 HRLPNLGKLAALRVLDLKP-----NMMGTYIILSNIYAAEGKWEEFAK 537 (609)
Q Consensus 495 ~~~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~ 537 (609)
.++..++.+.|..-..+.| .+...|..++..|.+.|+|+.|..
T Consensus 1329 peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1329 PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 5567778888887777666 677889999999999999999984
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.76 E-value=4.7e-16 Score=151.62 Aligned_cols=265 Identities=11% Similarity=0.048 Sum_probs=227.3
Q ss_pred CChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 007288 278 KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALI 356 (609)
Q Consensus 278 ~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 356 (609)
.+...+..+...+...| +++|..+|+++.... +.+...+..++..+...|++++|...+..+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 35566777888888889 999999999998753 3345566677888899999999999999999875 45677888999
Q ss_pred HHHHhcC-CHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 007288 357 DMYAKCG-NISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD 432 (609)
Q Consensus 357 ~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 432 (609)
..+...| ++++|...|+.+.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998874 356789999999999999999999999999853 234567777899999999999
Q ss_pred HHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC----------CCCHhhHHHHHHHHHhCCChHHH
Q 007288 433 EGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PF----------KPDESVWGPLLGACKEHRLPNLG 501 (609)
Q Consensus 433 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~~~~~~~~~a 501 (609)
+|...++++.+.. +.+...+..+...+...|++++|...++++ .. ......+..+..++...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999997754 346788999999999999999999999877 11 23456888999999999999999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 502 KLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 502 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
...++++++..|++...+..++.+|...|++++|.+.+++..+..
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999887643
No 23
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.75 E-value=8.1e-14 Score=150.93 Aligned_cols=440 Identities=10% Similarity=0.056 Sum_probs=291.0
Q ss_pred HhHHHHHHHccCChhHHHHhhccCC-CC-----CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHh
Q 007288 49 ATNLIKSYFDEGLIEEARTLFDEMP-ER-----DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKAC 122 (609)
Q Consensus 49 ~~~li~~~~~~g~~~~A~~~~~~~~-~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 122 (609)
-...++.|...|.+.+|+++++++. +| +....|.++....+. +..+..+..++.... + ...+...+
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Ia 1059 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIA 1059 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHH
Confidence 3677888888999999999998876 22 234566677777666 556666666665421 1 33466778
Q ss_pred hCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHHH
Q 007288 123 KGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVF 202 (609)
Q Consensus 123 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 202 (609)
...|.+++|..+|++.. ......+.++. ..+ ++++|.++.++.. +..+|..+..++.+.|++++|++.|
T Consensus 1060 i~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~-nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIG-NLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHh-hHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 88899999988888752 11122222322 555 8888888888773 4667888899999999999999998
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhH
Q 007288 203 KEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282 (609)
Q Consensus 203 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 282 (609)
.+. -|...|..++..|.+.|++++|.+.+....+.. +++.+.+.++.+|++.+++++...+. ..++...
T Consensus 1129 iKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad 1197 (1630)
T 1xi4_A 1129 IKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAH 1197 (1630)
T ss_pred Hhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHH
Confidence 664 367788888889999999999999998877754 44444456888888888888654443 3455666
Q ss_pred HHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 007288 283 WNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK 361 (609)
Q Consensus 283 ~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 361 (609)
|..+...|...| +++|..+|... ..|..+...+.+.|+++.|.+.+++. .+..+|..+..+|..
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhh
Confidence 777788888888 88888888874 37888888888888888888888776 355777777788888
Q ss_pred cCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcc--CCHHHHHHHH
Q 007288 362 CGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR-IVFMAVLTACSHA--GLVDEGLKYF 438 (609)
Q Consensus 362 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~--~~~~~a~~~~ 438 (609)
.|++..|...... ...+...+..++..|.+.|.+++|+.+++..... .+.. ..|.-+...+++. ++.-++.++|
T Consensus 1263 ~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L--eraH~gmftELaiLyaKy~peklmEhlk~f 1339 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELF 1339 (1630)
T ss_pred hhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--ChhHhHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 8888888877765 3334555667888888888888888888776643 3322 3554455555443 3444444444
Q ss_pred HHhhhcCCCC------ChhHHHHHHHHHhhcCCHHHHHHHHHhC--------------CCCCCHhhHHHHHHHHHhCCCh
Q 007288 439 KSMNDYNVNP------NKEIYGCVVDLLGRAGRVKEAYELIKSM--------------PFKPDESVWGPLLGACKEHRLP 498 (609)
Q Consensus 439 ~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------------~~~p~~~~~~~l~~~~~~~~~~ 498 (609)
.. +.++++ +...|.-++..|.+.|+++.|...+-+. ....+...|...+..|... .
T Consensus 1340 ~~--rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~--~ 1415 (1630)
T 1xi4_A 1340 WS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--K 1415 (1630)
T ss_pred HH--hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhh--C
Confidence 42 223333 4667888888888888888887444332 1223555566666666532 2
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 499 NLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 499 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
..++.-+..++. | ..-+...+..+.+.|...-+..+++.+..
T Consensus 1416 P~~lndLl~~l~--~--rlD~~R~V~l~~~~~~l~lik~yl~~vq~ 1457 (1630)
T 1xi4_A 1416 PLLLNDLLMVLS--P--RLDHTRAVNYFSKVKQLPLVKPYLRSVQN 1457 (1630)
T ss_pred hHHHHHHHHHhh--h--cCChHHHHHHHHHcCChHHhHHHHHHHHH
Confidence 233333333222 1 11123444555555555555555555443
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=2.2e-16 Score=156.66 Aligned_cols=279 Identities=11% Similarity=0.008 Sum_probs=209.2
Q ss_pred HhcCCHHHHHH-HHHhcCC--C-----ChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccH
Q 007288 260 CRFDCLSDANQ-YFDEMTE--K-----DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAAL 330 (609)
Q Consensus 260 ~~~g~~~~A~~-~~~~~~~--~-----~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 330 (609)
...|++++|.. .|++... + +...+..+...+.+.| +++|...|+++.+.. +.+...+..+...+...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 33466777776 6665432 1 2345667777777777 788888888777653 33556777777778888888
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcchHHH---------------HHHHHHh
Q 007288 331 SCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--R-DLVTWTS---------------MMIGYGA 392 (609)
Q Consensus 331 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~~~ 392 (609)
+.|...++.+.+.. +.+..++..+..+|...|++++|...|+.+.+ | +...+.. .+..+..
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 88888888877765 44667777888888888888888888887653 2 1112211 1333348
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 007288 393 HGHGKEAIELFDEMVKSGVR-PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471 (609)
Q Consensus 393 ~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 471 (609)
.|++++|...++++.+.... ++..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|++
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 89999999999999985322 147899999999999999999999999997654 3467889999999999999999999
Q ss_pred HHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC-----------cchHHHHHHHHHhcCChHHHHHH
Q 007288 472 LIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM-----------MGTYIILSNIYAAEGKWEEFAKF 538 (609)
Q Consensus 472 ~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~ 538 (609)
.++++ ...| +...+..+..++.+.|++++|...+++++++.|++ ...|..++.+|...|++++|..+
T Consensus 273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 99987 3344 56788889999999999999999999999988876 78999999999999999999988
Q ss_pred HHH
Q 007288 539 RKI 541 (609)
Q Consensus 539 ~~~ 541 (609)
+++
T Consensus 353 ~~~ 355 (368)
T 1fch_A 353 DAR 355 (368)
T ss_dssp HTT
T ss_pred HHH
Confidence 763
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=1e-14 Score=152.13 Aligned_cols=409 Identities=10% Similarity=0.031 Sum_probs=281.5
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHH
Q 007288 76 DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMD 155 (609)
Q Consensus 76 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 155 (609)
+..+|..++. +.+.|++++|..+|+++.+.. +-+...|...+..+.+.|+++.|..+|+++++.. |+...|..++.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 5678999998 478999999999999999852 3356678999999999999999999999998865 56667777775
Q ss_pred HHH-hcCCCHHHHHH----HHccCC------CCChhhHHHHHHHHHh---------cCChhhHHHHHHHHHHCCCCCCHh
Q 007288 156 VYA-TCCISMDNARL----VFNDMK------WKNDVSWTTLITGYAH---------SGNGYGGLGVFKEMLLEGVEMNPY 215 (609)
Q Consensus 156 ~~~-~~g~~~~~A~~----~~~~~~------~~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~g~~p~~~ 215 (609)
... ..| +.+.|.+ +|+... ..+...|...+..... .|+++.|..+|++.......+...
T Consensus 88 ~~~~~~~-~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 88 YVRETKG-KLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHTT-TSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHcc-chhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 443 445 7766654 666432 2356778888877655 688999999999998731111112
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh-------cC------CCC---
Q 007288 216 SFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE-------MT------EKD--- 279 (609)
Q Consensus 216 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~------~~~--- 279 (609)
.|..........|. ..+.. ++. .+.+++..|..++.. +. .|+
T Consensus 167 ~~~~~~~~e~~~~~-~~~~~-------------------~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~ 224 (530)
T 2ooe_A 167 LWRDYNKYEEGINI-HLAKK-------------------MIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTP 224 (530)
T ss_dssp HHHHHHHHHHHHCH-HHHHH-------------------HHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--C
T ss_pred HHHHHHHHHHhhch-hHHHH-------------------HHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCCh
Confidence 23222211100110 00111 110 012334444443332 11 111
Q ss_pred -----hhHHHHHHHHHHhCC-----c----hHHHHHHHHhHHCCCCCCHHhHHHHHHHHHh-------hccHH-------
Q 007288 280 -----LITWNTIIAGYEKSG-----S----SECLNMFSKMKSERFSPNCFTFTSIIAACAT-------LAALS------- 331 (609)
Q Consensus 280 -----~~~~~~li~~~~~~~-----~----~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~-------~~~~~------- 331 (609)
...|...+......+ . ..+..+|++..... +-+...|......+.. .|+++
T Consensus 225 ~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~ 303 (530)
T 2ooe_A 225 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 303 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhH
Confidence 234544443322221 1 36677888877642 3355666666666654 68876
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-c-chHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007288 332 CGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--RD-L-VTWTSMMIGYGAHGHGKEAIELFDEMV 407 (609)
Q Consensus 332 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 407 (609)
.|..++++..+.-.+.+...+..++..+.+.|++++|..+|+.+.+ |+ . ..|..++..+.+.|++++|.++|++..
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8899999888633355688889999999999999999999998873 43 2 478888888889999999999999999
Q ss_pred HCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-
Q 007288 408 KSGVRPDRIVFMAVLTA-CSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM----PFKPD- 481 (609)
Q Consensus 408 ~~g~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~- 481 (609)
+.. +.+...|...... +...|++++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++. +..|+
T Consensus 384 ~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~ 461 (530)
T 2ooe_A 384 EDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 461 (530)
T ss_dssp TCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGG
T ss_pred hcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHH
Confidence 853 2223333332222 336899999999999996643 336788999999999999999999999987 22332
Q ss_pred -HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC
Q 007288 482 -ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 482 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
...|...+......|+.+.+..+..++.+..|.
T Consensus 462 ~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 462 SGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 447888888899999999999999999998883
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=1.9e-15 Score=155.48 Aligned_cols=364 Identities=9% Similarity=-0.020 Sum_probs=184.5
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHC-----C---CCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhC------CC
Q 007288 181 SWTTLITGYAHSGNGYGGLGVFKEMLLE-----G---VEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG------FG 246 (609)
Q Consensus 181 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g---~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g------~~ 246 (609)
.||.|...+...|++++|++.|++..+. + -.....+|+.+...+...|++++|...++++.+.. ..
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 3444445555555555555555443321 0 11123345555555555555555555555444321 00
Q ss_pred -CChhHHHHHHHHHHhc--CCHHHHHHHHHhcCC--C-ChhHHHHHHHH---HHhCC-chHHHHHHHHhHHCCCCCCHHh
Q 007288 247 -SNLPVMNSILDMYCRF--DCLSDANQYFDEMTE--K-DLITWNTIIAG---YEKSG-SSECLNMFSKMKSERFSPNCFT 316 (609)
Q Consensus 247 -~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~--~-~~~~~~~li~~---~~~~~-~~~a~~~~~~m~~~~~~p~~~t 316 (609)
....++..+..++.+. +++++|...|++..+ | +...+..+... +...+ .++|++.+++..+.. +.+...
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~ 211 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYL 211 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHH
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHH
Confidence 1123333333333332 345555555555432 2 22333333222 22233 455555555554421 112333
Q ss_pred HHHHHHHHH----hhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcchHHHHHHH
Q 007288 317 FTSIIAACA----TLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--R-DLVTWTSMMIG 389 (609)
Q Consensus 317 ~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~ 389 (609)
+..+...+. ..++.+.|...+++..... +.+..++..+...|.+.|++++|...|++..+ | +..++..+..+
T Consensus 212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 290 (472)
T 4g1t_A 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCC 290 (472)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 333333322 2345556666666555543 33445555566666666666666666665542 2 23344444443
Q ss_pred HHh-------------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCh
Q 007288 390 YGA-------------------HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK 450 (609)
Q Consensus 390 ~~~-------------------~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 450 (609)
|.. .+.++.|...+++..+.. +.+..++..+...+...|++++|+..|++..+....+..
T Consensus 291 y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~ 369 (472)
T 4g1t_A 291 YRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA 369 (472)
T ss_dssp HHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChH
Confidence 322 234567888888877742 223457778888999999999999999998765543332
Q ss_pred h--HHHHHHH-HHhhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007288 451 E--IYGCVVD-LLGRAGRVKEAYELIKSM-PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526 (609)
Q Consensus 451 ~--~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 526 (609)
. .+..+.. .+...|++++|+..|++. .+.|+...+... ...+..++++.++.+|+++.+|..++.+|
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~ 440 (472)
T 4g1t_A 370 KQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQ 440 (472)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 1 2333332 234678999999999876 566665443332 34456678888899999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCCCcccCceeEE
Q 007288 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWI 556 (609)
Q Consensus 527 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 556 (609)
...|++++|++.|++..+.+...+...+|+
T Consensus 441 ~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 441 ELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHCC-----------------------
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999999999999999998776544444454
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.72 E-value=6.4e-16 Score=153.32 Aligned_cols=293 Identities=8% Similarity=0.026 Sum_probs=166.9
Q ss_pred hcCCCHHHHHH-HHccCCC---C----ChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCc
Q 007288 159 TCCISMDNARL-VFNDMKW---K----NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230 (609)
Q Consensus 159 ~~g~~~~~A~~-~~~~~~~---~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 230 (609)
-.| ++++|.. .|+.... . +...+..+...+.+.|++++|+..|+++.... +.+...+..+...+...|++
T Consensus 37 ~~~-~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 37 WLS-DYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHH-HHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 344 7777776 6664432 1 34557777777777777777777777777653 23556667777777777777
Q ss_pred hhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHhCCchHHHHHHHHhHH
Q 007288 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL---ITWNTIIAGYEKSGSSECLNMFSKMKS 307 (609)
Q Consensus 231 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~a~~~~~~m~~ 307 (609)
++|...++.+.+.. +.+..++..+..+|...|++++|...|+++.+.+. ..+..+... ..
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------------~~ 177 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG----------------AG 177 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----------------------
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH----------------hh
Confidence 77777777777664 44566667777777777777777776665532111 000000000 00
Q ss_pred CCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchH
Q 007288 308 ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG-NLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTW 383 (609)
Q Consensus 308 ~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 383 (609)
...+. ..+. .+..+...|++++|...+..+.+..... +..++..+..+|.+.|++++|...|+.+.+ .+..+|
T Consensus 178 -~~~~~-~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 254 (368)
T 1fch_A 178 -GAGLG-PSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLW 254 (368)
T ss_dssp ----------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred -hhccc-HHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHH
Confidence 00000 0011 2223336777888888887777654221 456666777777777777777777766542 244566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCC----------ChhHH
Q 007288 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP----------NKEIY 453 (609)
Q Consensus 384 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~ 453 (609)
..+...+...|++++|+..|+++.+.. +.+..++..+...+.+.|++++|...|+++.+..... ...+|
T Consensus 255 ~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 333 (368)
T 1fch_A 255 NKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIW 333 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHH
Confidence 666677777777777777777766632 2344566666667777777777777776664322111 14556
Q ss_pred HHHHHHHhhcCCHHHHHHHHH
Q 007288 454 GCVVDLLGRAGRVKEAYELIK 474 (609)
Q Consensus 454 ~~l~~~~~~~g~~~~A~~~~~ 474 (609)
..+..+|...|++++|..+++
T Consensus 334 ~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 334 STLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHHHhCChHhHHHhHH
Confidence 666666666666666665554
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=2.9e-16 Score=155.65 Aligned_cols=259 Identities=12% Similarity=-0.029 Sum_probs=198.8
Q ss_pred hhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007288 280 LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDM 358 (609)
Q Consensus 280 ~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 358 (609)
...|..+...+.+.| +++|...|+++.... +.+...+..+...+...|+++.|...++++.+.. +.+..++..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 344666677777777 777777777776643 3356677777788888888888888888877764 3456777888888
Q ss_pred HHhcCCHHHHHHHHHhcCC--CC-----------cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHH
Q 007288 359 YAKCGNISDSQKIFSEMSD--RD-----------LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR-PDRIVFMAVLTA 424 (609)
Q Consensus 359 ~~~~g~~~~A~~~~~~~~~--~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~ 424 (609)
|...|++++|...|+++.+ |+ ...+..+...+...|++++|...++++.+.... ++..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 8888888888888887763 11 223445578889999999999999999985322 157899999999
Q ss_pred HhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHH
Q 007288 425 CSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGK 502 (609)
Q Consensus 425 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 502 (609)
+...|++++|+..++++.+.. +.+..++..+..+|...|++++|++.++++ ...| +..+|..+..++...|++++|.
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999997654 346888999999999999999999999987 3445 4778888999999999999999
Q ss_pred HHHHHHhccCCC------------CcchHHHHHHHHHhcCChHHHHHHHHH
Q 007288 503 LAALRVLDLKPN------------MMGTYIILSNIYAAEGKWEEFAKFRKI 541 (609)
Q Consensus 503 ~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (609)
..+++++++.|. +...|..++.++...|+.+.+..+.++
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999998775 367899999999999999988877654
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.71 E-value=1e-14 Score=138.84 Aligned_cols=269 Identities=9% Similarity=-0.019 Sum_probs=204.9
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCh----hHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHH
Q 007288 258 MYCRFDCLSDANQYFDEMTEKDL----ITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSC 332 (609)
Q Consensus 258 ~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 332 (609)
-....|++..|+..++.....+. .....+..+|...| .++|+..++. .-.|+..++..+...+...++.+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 34556778888887777655332 23445667777788 7777765543 135667778888888888888999
Q ss_pred HHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007288 333 GQQVHAGIVRRGL-DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411 (609)
Q Consensus 333 a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 411 (609)
|...++.+...+. +.+...+..+..++...|++++|.+.++. ..+...+..++..+.+.|++++|.+.|+++.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-- 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 9999998887764 34566677778899999999999999998 457788999999999999999999999999985
Q ss_pred CCCHHHH---HHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHH
Q 007288 412 RPDRIVF---MAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWG 486 (609)
Q Consensus 412 ~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 486 (609)
.|+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|.+.+++. ...| +..++.
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 4554321 223344456689999999999997653 457889999999999999999999999987 4445 567888
Q ss_pred HHHHHHHhCCChHH-HHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 007288 487 PLLGACKEHRLPNL-GKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFR 539 (609)
Q Consensus 487 ~l~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (609)
.++..+...|+.++ +.+.++++++++|+++.+. +...+.+.++++..-|
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 89989999999875 6789999999999876543 4455556666655433
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.69 E-value=2.1e-15 Score=149.42 Aligned_cols=230 Identities=12% Similarity=0.102 Sum_probs=194.8
Q ss_pred CHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHH
Q 007288 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIG 389 (609)
Q Consensus 313 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 389 (609)
+...+..+...+.+.|+++.|..+++.+.+.. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44568888999999999999999999999875 45788899999999999999999999998873 457789999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCC-CChhHHHHHH
Q 007288 390 YGAHGHGKEAIELFDEMVKSGVRPDR-----------IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN-PNKEIYGCVV 457 (609)
Q Consensus 390 ~~~~g~~~~A~~~~~~m~~~g~~p~~-----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 457 (609)
|...|++++|+..|+++.+. .|+. ..+..+...+...|++++|..+++++.+.... ++..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999874 3332 23344578899999999999999999765432 2688999999
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHH
Q 007288 458 DLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEF 535 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 535 (609)
..|...|++++|++.++++ ...| +..+|..+..++...|++++|+..++++++..|++..++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999987 3334 5788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 007288 536 AKFRKIMRGM 545 (609)
Q Consensus 536 ~~~~~~m~~~ 545 (609)
...+++..+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999874
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.68 E-value=4.3e-15 Score=144.52 Aligned_cols=252 Identities=9% Similarity=-0.027 Sum_probs=177.0
Q ss_pred HHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 007288 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNIS 366 (609)
Q Consensus 288 ~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 366 (609)
..+...| +++|...|+++.+.. +.+...+..+...+...|+++.|...++.+.+.. +.+..++..+...|...|+++
T Consensus 29 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~ 106 (327)
T 3cv0_A 29 LSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNAN 106 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHH
Confidence 3333444 444444444443321 1234444455555555555555555555555543 234445555566666666666
Q ss_pred HHHHHHHhcCC--C-CcchHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 007288 367 DSQKIFSEMSD--R-DLVTWTSM--------------MI-GYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHA 428 (609)
Q Consensus 367 ~A~~~~~~~~~--~-~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 428 (609)
+|...++.+.+ | +...+..+ .. .+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 107 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 185 (327)
T 3cv0_A 107 AALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLS 185 (327)
T ss_dssp HHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHh
Confidence 66666655542 1 11222222 22 3677889999999999998853 33677889999999999
Q ss_pred CCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHH
Q 007288 429 GLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAAL 506 (609)
Q Consensus 429 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 506 (609)
|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++ ...| +...+..+..++...|++++|...++
T Consensus 186 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 264 (327)
T 3cv0_A 186 NNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLV 264 (327)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999997654 346788899999999999999999999887 3334 57788888999999999999999999
Q ss_pred HHhccCCC------------CcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 007288 507 RVLDLKPN------------MMGTYIILSNIYAAEGKWEEFAKFRKIMR 543 (609)
Q Consensus 507 ~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 543 (609)
++++..|. +...+..++.+|...|++++|..++++..
T Consensus 265 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 265 RAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999997 68899999999999999999999986543
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.68 E-value=3.9e-15 Score=141.73 Aligned_cols=246 Identities=13% Similarity=0.053 Sum_probs=200.0
Q ss_pred HHHHhCC-chHHHHHHHHhHHCCCCCCH--HhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 007288 288 AGYEKSG-SSECLNMFSKMKSERFSPNC--FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGN 364 (609)
Q Consensus 288 ~~~~~~~-~~~a~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 364 (609)
.-....| +..|+..+++... ..|+. .....+..++...|+++.|...++. .-+|+...+..+...+...|+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 4455667 8999998877654 33443 3456678899999999999986654 246677888999999999999
Q ss_pred HHHHHHHHHhcC----CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007288 365 ISDSQKIFSEMS----DR-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439 (609)
Q Consensus 365 ~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 439 (609)
.++|.+.++++. .| +...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+.++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999874 24 455677777899999999999999987 4677799999999999999999999999
Q ss_pred HhhhcCCCCChhHH---HHHHHHHhhcCCHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC
Q 007288 440 SMNDYNVNPNKEIY---GCVVDLLGRAGRVKEAYELIKSM--PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 440 ~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
++.+.. |+.... ..++..+...|++++|..+|+++ ....+...|+.+..++.+.|++++|+..++++++.+|+
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 997754 443221 23345555669999999999998 23347788999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhcCChHH-HHHHHHHHHhCCC
Q 007288 515 MMGTYIILSNIYAAEGKWEE-FAKFRKIMRGMGS 547 (609)
Q Consensus 515 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~~ 547 (609)
++.++..++.++...|++++ +.++++++.+..+
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999986 5789999887544
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=7.9e-17 Score=168.87 Aligned_cols=148 Identities=13% Similarity=0.146 Sum_probs=115.4
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007288 347 GNLALANALIDMYAKCGNISDSQKIFSEMS-------DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFM 419 (609)
Q Consensus 347 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 419 (609)
.-..+|++||++|++.|++++|.++|++|. .||++|||+||.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 345678888888888888888888886653 5899999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCC-HHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC------HhhHHHHHHHH
Q 007288 420 AVLTACSHAGL-VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD------ESVWGPLLGAC 492 (609)
Q Consensus 420 ~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~------~~~~~~l~~~~ 492 (609)
++|.++|+.|+ .++|.++|++|.+.|+.||..+|++++....+.+-++...++... ++|+ ..+...|.+.|
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~--f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPT--FSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCC--CCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcc--cCCCCCCcccccchHHHHHHH
Confidence 99999999987 478899999999999999999999988776665444433333222 3332 33444455666
Q ss_pred HhCC
Q 007288 493 KEHR 496 (609)
Q Consensus 493 ~~~~ 496 (609)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 6555
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.65 E-value=2.9e-14 Score=138.59 Aligned_cols=274 Identities=8% Similarity=-0.039 Sum_probs=174.9
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHH
Q 007288 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILD 257 (609)
Q Consensus 178 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 257 (609)
+...|..+...+...|++++|..+|+++..... .+...+..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 445677778888888888888888888877532 366677777778888888888888888888764 456667777777
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhCCchHHHHHHHHhHHCCCCCCHHhHHHHHH--HHHhhccHHH
Q 007288 258 MYCRFDCLSDANQYFDEMTEKD---LITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIA--ACATLAALSC 332 (609)
Q Consensus 258 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~--~~~~~~~~~~ 332 (609)
.|...|++++|...++++.+.+ ...+..+.. ..|+......+.. .+...|+++.
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQ---------------------ADVDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC-----------------------------------------CCTTSHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhH---------------------HHHHHHHHHHHHHhHHHHHcccHHH
Confidence 7777788877777776654211 111111100 0011111111212 2566777888
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007288 333 GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409 (609)
Q Consensus 333 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 409 (609)
|...+..+.+.. +.+..++..+..+|.+.|++++|...++.+.+ .+..+|..+...+...|++++|...++++.+.
T Consensus 157 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 157 CRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 888888777664 33566667777777777777777777776652 24556667777777777777777777777664
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCC-----------ChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007288 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP-----------NKEIYGCVVDLLGRAGRVKEAYELIKSM 476 (609)
Q Consensus 410 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 476 (609)
. +.+..++..+...+...|++++|...++++.+..... +...+..+..++.+.|++++|..++++.
T Consensus 236 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 236 N-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2 2345566677777777777777777777764433221 3556666666777777777776666544
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=1e-13 Score=142.51 Aligned_cols=381 Identities=10% Similarity=-0.055 Sum_probs=204.2
Q ss_pred CcchHHHHHHHhhCCCChHHHHHHHHHHHHh-----C--CCC-CcchhhHHHHHHHhcCCCHHHHHHHHccCCC------
Q 007288 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKE-----G--LEG-SIYVENSLMDVYATCCISMDNARLVFNDMKW------ 176 (609)
Q Consensus 111 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~-~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~------ 176 (609)
....|+.+...+...|++++|.+.+++.++. + ..| ...+|+.+..+|...| ++++|...|+...+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g-~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMG-RLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHhHhcc
Confidence 4556788888888888888888888877653 1 122 2346677777777777 77777777654321
Q ss_pred -----CChhhHHHHHHHHHhc--CChhhHHHHHHHHHHCCCCCCHhhHHHHHHH---HHccCCchhHHHHHHHHHHhCCC
Q 007288 177 -----KNDVSWTTLITGYAHS--GNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA---CASTGWVSFGKLIHAAVIKHGFG 246 (609)
Q Consensus 177 -----~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~---~~~~g~~~~a~~~~~~~~~~g~~ 246 (609)
....+++.+..++... +++++|++.|++....... +...+..+..+ +...++.++|.+.++..++.. +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1234455444444443 4577777777777664211 23333333332 334566677777777776654 3
Q ss_pred CChhHHHHHHHHHHh----cCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCC-HHhH
Q 007288 247 SNLPVMNSILDMYCR----FDCLSDANQYFDEMTE---KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPN-CFTF 317 (609)
Q Consensus 247 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~-~~t~ 317 (609)
.+..++..+...+.. .|++++|.+.+++... .+...+..+...|...| .++|...|.+..+. .|+ ..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHH
Confidence 344455444444333 3455666666665432 34455666666666666 67777766666653 232 3333
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCcchHHHHHHHHHhcC
Q 007288 318 TSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS---DRDLVTWTSMMIGYGAHG 394 (609)
Q Consensus 318 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 394 (609)
..+...+...+....+.. ...........+..+.|...|+... ..+..++..+...|...|
T Consensus 285 ~~lg~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhc
Confidence 333333321111000000 0000001111233566777777665 245678889999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 007288 395 HGKEAIELFDEMVKSGVRPDRI--VFMAVLT-ACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471 (609)
Q Consensus 395 ~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 471 (609)
++++|++.|++..+....|... .+..+.. .....|++++|+..|++..+.. |+........ ..+.+
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~~~~---------~~l~~ 417 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKEKMK---------DKLQK 417 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHHHHH---------HHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHH---------HHHHH
Confidence 9999999999999864333222 2233322 2457899999999999987744 4433322222 22333
Q ss_pred HHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHH
Q 007288 472 LIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523 (609)
Q Consensus 472 ~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 523 (609)
++++. ...| +..+|..|..++...|++++|++.|+++++++|.++.....++
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 33332 2233 5678999999999999999999999999999997777666554
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.63 E-value=1.5e-15 Score=159.33 Aligned_cols=144 Identities=16% Similarity=0.129 Sum_probs=120.5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHH
Q 007288 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVK---SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCV 456 (609)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 456 (609)
..|||+||.+|++.|++++|.++|.+|.+ .|+.||..||++||.+||+.|++++|.++|++|.+.|+.||..+|+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 35899999999999999999999988764 589999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCH-HHHHHHHHhC---CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCC----C-----CcchHHHHH
Q 007288 457 VDLLGRAGRV-KEAYELIKSM---PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP----N-----MMGTYIILS 523 (609)
Q Consensus 457 ~~~~~~~g~~-~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p----~-----~~~~~~~l~ 523 (609)
|+++++.|+. ++|.++|++| |+.||..+|++++.++.+. .+++.+.+..| + ...+...|-
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~-------~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA-------TVLKAVHKVKPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH-------HHHHHHGGGCCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH-------HHHHHHHHhCcccCCCCCCcccccchHHHH
Confidence 9999999985 7899999999 8999999999998655443 23333333332 1 123444577
Q ss_pred HHHHhcC
Q 007288 524 NIYAAEG 530 (609)
Q Consensus 524 ~~~~~~g 530 (609)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 7777665
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=4.9e-14 Score=131.81 Aligned_cols=220 Identities=11% Similarity=0.018 Sum_probs=181.9
Q ss_pred HhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C----C----cchHH
Q 007288 315 FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--R----D----LVTWT 384 (609)
Q Consensus 315 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~ 384 (609)
..+..+...+...|++++|...+..+.+.. .+...+..+..+|...|++++|...|+...+ | + ...|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456667777778888888888888887776 6677788888888888888888888887763 1 1 46788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcC
Q 007288 385 SMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464 (609)
Q Consensus 385 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 464 (609)
.+...+...|++++|...|+++.+. .|+. ..+...|++++|...++.+.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 8889999999999999999999884 4553 34566788999999999987644 335677888999999999
Q ss_pred CHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 007288 465 RVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIM 542 (609)
Q Consensus 465 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 542 (609)
++++|+..++++ ...| +...|..+..++...|++++|...++++++..|+++..+..++.+|...|++++|...+++.
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999887 3333 57788888899999999999999999999999999999999999999999999999999998
Q ss_pred HhCC
Q 007288 543 RGMG 546 (609)
Q Consensus 543 ~~~~ 546 (609)
.+..
T Consensus 234 ~~~~ 237 (258)
T 3uq3_A 234 RTKD 237 (258)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 8743
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.61 E-value=3e-14 Score=129.46 Aligned_cols=196 Identities=13% Similarity=0.025 Sum_probs=154.0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007288 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422 (609)
Q Consensus 346 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 422 (609)
+++...+..+...+.+.|++++|...|+...+ .+...+..+..++.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45666777888888899999999999988764 355778888889999999999999999998852 23456888888
Q ss_pred HHHhcc-----------CCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhHHHHHH
Q 007288 423 TACSHA-----------GLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDESVWGPLLG 490 (609)
Q Consensus 423 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~ 490 (609)
..+... |++++|+..+++..+... -+...+..+..++...|++++|+..|++. ....+...+..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~ 159 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH
Confidence 888888 999999999999977553 35778889999999999999999999887 21267888999999
Q ss_pred HHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 007288 491 ACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMR 543 (609)
Q Consensus 491 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 543 (609)
++...|++++|+..++++++.+|+++..+..++.++...|++++|+..+++..
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988764
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=2.5e-13 Score=126.96 Aligned_cols=231 Identities=9% Similarity=-0.036 Sum_probs=177.5
Q ss_pred HHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCC--Cc----hhHHHH
Q 007288 282 TWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD--GN----LALANA 354 (609)
Q Consensus 282 ~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 354 (609)
.|..+...+...| +++|+..|++..+.. .+...+..+...+...|+++.|...+..+.+.... ++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 4555666666666 777777777766655 66677777778888888888888888877654311 11 467788
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCH
Q 007288 355 LIDMYAKCGNISDSQKIFSEMSD--RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD-RIVFMAVLTACSHAGLV 431 (609)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~ 431 (609)
+..+|.+.|++++|...|+.+.+ |+ ...+...|++++|...++++... .|+ ...+..+...+...|++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCH
Confidence 88888888999998888888764 33 24566778899999999998884 343 45788888889999999
Q ss_pred HHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHh
Q 007288 432 DEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVL 509 (609)
Q Consensus 432 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 509 (609)
++|...++++.+.. +.+...+..+...+...|++++|+..+++. ...| +...|..+..++...|++++|...+++++
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999997655 336788889999999999999999999887 3334 46778888899999999999999999999
Q ss_pred ccC------CCCcchHHHHHH
Q 007288 510 DLK------PNMMGTYIILSN 524 (609)
Q Consensus 510 ~~~------p~~~~~~~~l~~ 524 (609)
++. |.+...+..+..
T Consensus 235 ~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 235 TKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHTTTTHHHHHHHHHH
T ss_pred HhChhhcCCCchHHHHHHHHH
Confidence 988 766665555544
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=5.4e-13 Score=126.07 Aligned_cols=237 Identities=8% Similarity=-0.093 Sum_probs=185.2
Q ss_pred chHHHHHHHHhHHCCCC---CCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 007288 295 SSECLNMFSKMKSERFS---PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKI 371 (609)
Q Consensus 295 ~~~a~~~~~~m~~~~~~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 371 (609)
+++|+..|+++.+.... .+...+..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++|...
T Consensus 21 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 99 (275)
T 1xnf_A 21 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 99 (275)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 67788888887765321 135567778888889999999999999988875 44677888899999999999999999
Q ss_pred HHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCC
Q 007288 372 FSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP 448 (609)
Q Consensus 372 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 448 (609)
|+.+.+ .+...+..+..+|...|++++|...|+++.+. .|+.......+..+...|++++|...++...... ++
T Consensus 100 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~ 176 (275)
T 1xnf_A 100 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DK 176 (275)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CC
T ss_pred HHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-Cc
Confidence 998873 35778999999999999999999999999984 4555555555556677899999999998885543 33
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-----HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHH
Q 007288 449 NKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD-----ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 522 (609)
+...+. ++..+...++.++|++.+++. ...|+ ...+..+..++...|++++|...++++++.+|++... .
T Consensus 177 ~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~ 252 (275)
T 1xnf_A 177 EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---H 252 (275)
T ss_dssp CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---H
T ss_pred chHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---H
Confidence 444444 777788888999999999887 33332 4678888899999999999999999999999976544 3
Q ss_pred HHHHHhcCChHHHHHHH
Q 007288 523 SNIYAAEGKWEEFAKFR 539 (609)
Q Consensus 523 ~~~~~~~g~~~~A~~~~ 539 (609)
+.++...|++++|++.+
T Consensus 253 ~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 253 RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhhHHHH
Confidence 66788889999988776
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.53 E-value=3.1e-12 Score=129.91 Aligned_cols=375 Identities=7% Similarity=-0.040 Sum_probs=216.4
Q ss_pred HHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCH---HHHHHHHccCCCCChhhHHHHHHHHHhcC--
Q 007288 119 LKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM---DNARLVFNDMKWKNDVSWTTLITGYAHSG-- 193 (609)
Q Consensus 119 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g-- 193 (609)
...+.+.|++++|.+++++..+.| +...+..|...|...| +. ++|...|+...+.+...+..|...+...+
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g-~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTR-DPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccC-CCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 344555667777777777776665 2333444444454455 55 77777777766556666666666555554
Q ss_pred ---ChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCch---hHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHH
Q 007288 194 ---NGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS---FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSD 267 (609)
Q Consensus 194 ---~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~---~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 267 (609)
++++|+..|++..+.|.. ..+..+...+...+..+ .+.+.+......| +......+...|...+.+++
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 667888888888776543 24555555555444332 2333444443333 23344455555555553332
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhCCchHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhc---cHHHHHHHHHHHHHhC
Q 007288 268 ANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLA---ALSCGQQVHAGIVRRG 344 (609)
Q Consensus 268 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~~ 344 (609)
+... +..+++.... .+...+..+...+...| +.++|...|+...+.|
T Consensus 160 ~~~~--------------------------a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g 209 (452)
T 3e4b_A 160 HLDD--------------------------VERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG 209 (452)
T ss_dssp GHHH--------------------------HHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred CHHH--------------------------HHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC
Confidence 2221 1122222211 12225555666666666 7777777777777766
Q ss_pred CCCchhHHHHHHHHHHhc----CCHHHHHHHHHhcCCCCcchHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007288 345 LDGNLALANALIDMYAKC----GNISDSQKIFSEMSDRDLVTWTSMMIG-Y--GAHGHGKEAIELFDEMVKSGVRPDRIV 417 (609)
Q Consensus 345 ~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~~ 417 (609)
+++...+..|..+|... +++++|...|+.....+...+..+... + ...+++++|++.|++..+.| +...
T Consensus 210 -~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A 285 (452)
T 3e4b_A 210 -TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRA 285 (452)
T ss_dssp -CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHH
T ss_pred -CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 33444445566666554 688888888888773355667777666 3 46789999999999998876 5667
Q ss_pred HHHHHHHHhccC-----CHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHhhHHHH
Q 007288 418 FMAVLTACSHAG-----LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR----AGRVKEAYELIKSMPFKPDESVWGPL 488 (609)
Q Consensus 418 ~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l 488 (609)
+..|...|. .| ++++|..+|++.. .-+...+..|...|.. ..++++|...|++.-..-+......|
T Consensus 286 ~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~L 360 (452)
T 3e4b_A 286 ELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAI 360 (452)
T ss_dssp HHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHH
Confidence 777777776 45 8999999999887 3366777777777765 34899999999887323345566666
Q ss_pred HHHHHh----CCChHHHHHHHHHHhccCCCCcchHHHHHHHH--HhcCChHHHHHHHHHHHh
Q 007288 489 LGACKE----HRLPNLGKLAALRVLDLKPNMMGTYIILSNIY--AAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 489 ~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~ 544 (609)
...|.. ..+.++|...++++.+.++.. ....+..+. ...++..+|.++.++.++
T Consensus 361 g~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 361 AQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 666664 468899999999998877633 333333333 233456677777776655
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.53 E-value=4.7e-12 Score=119.60 Aligned_cols=224 Identities=9% Similarity=-0.021 Sum_probs=175.1
Q ss_pred CHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CCcchHHHHH
Q 007288 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK----CGNISDSQKIFSEMSD-RDLVTWTSMM 387 (609)
Q Consensus 313 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li 387 (609)
+..++..+...+...|++++|...|+...+. .+...+..+...|.. .|++++|...|++..+ .+...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4455666666677777788888777777763 344566677777777 8888888888877654 3566777788
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhhhcCCCCChhHHHHHHHH
Q 007288 388 IGYGA----HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH----AGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL 459 (609)
Q Consensus 388 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 459 (609)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 88888 888889988888888864 66778888888888 889999999998887755 56677777888
Q ss_pred Hhh----cCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----CCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh---
Q 007288 460 LGR----AGRVKEAYELIKSMPFKPDESVWGPLLGACKE----HRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA--- 528 (609)
Q Consensus 460 ~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 528 (609)
|.. .+++++|+..+++.-...+...+..+...+.. .+++++|...++++.+.+| +..+..++.+|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~ 233 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEG 233 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSS
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCC
Confidence 877 88999999888877222356677778888888 8999999999999988876 6788889999998
Q ss_pred -cCChHHHHHHHHHHHhCCC
Q 007288 529 -EGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 529 -~g~~~~A~~~~~~m~~~~~ 547 (609)
.+++++|...+++..+.|.
T Consensus 234 ~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 234 VTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSCCSTTHHHHHHHHHHHTC
T ss_pred cccCHHHHHHHHHHHHHcCC
Confidence 8999999999999887665
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.52 E-value=1.4e-12 Score=121.48 Aligned_cols=196 Identities=9% Similarity=-0.020 Sum_probs=141.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 007288 350 ALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS 426 (609)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 426 (609)
..+..+...+...|++++|...|+.+.+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 4455556666666777776666666542 245566777777777788888888887777642 235567777777788
Q ss_pred ccCCHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHH
Q 007288 427 HAGLVDEGLKYFKSMNDYNVNP-NKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKL 503 (609)
Q Consensus 427 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 503 (609)
..|++++|..+++++.+.+..| +...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|..
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888775532333 4556677777888888888888888776 2233 46677777788888888888888
Q ss_pred HHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 504 AALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 504 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
.++++++..|++...+..++.+|...|++++|.++++++.+..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 197 YYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 8888888888778888888888888888888888888887644
No 44
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.52 E-value=1.8e-12 Score=131.64 Aligned_cols=343 Identities=10% Similarity=0.002 Sum_probs=217.5
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCc---hhHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 007288 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV---SFGKLIHAAVIKHGFGSNLPVMNSILDMYCR 261 (609)
Q Consensus 185 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~---~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 261 (609)
+...+.+.|++++|++.|++..+.|. ...+..+...+...|+. ++|...|+...+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 34455566777777777777666542 22333333344445555 6677777666643 34444555554444
Q ss_pred cC-----CHHHHHHHHHhcCCC-ChhHHHHHHHHHHhCC-c---hHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHH
Q 007288 262 FD-----CLSDANQYFDEMTEK-DLITWNTIIAGYEKSG-S---SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALS 331 (609)
Q Consensus 262 ~g-----~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~-~---~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 331 (609)
.+ ++++|...|++..++ +...+..|...|...+ . .++.+.+......| +......+...+...+.++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 33 566777777665443 3345556666665554 3 23444555554444 3445555666666666444
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHhcCC---CCcchHHHHHHHHHhc----CCHHHHHH
Q 007288 332 CGQQVHAGIVRRGLDGNLALANALIDMYAKCG---NISDSQKIFSEMSD---RDLVTWTSMMIGYGAH----GHGKEAIE 401 (609)
Q Consensus 332 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~A~~ 401 (609)
.+......+.+.-...++..+..|..+|.+.| +.++|...|+...+ ++...+..+...|... +++++|+.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 44443333333223344458888999999999 99999999998864 2333446677777655 79999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH-H--hccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcC-----CHHHHHHHH
Q 007288 402 LFDEMVKSGVRPDRIVFMAVLTA-C--SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG-----RVKEAYELI 473 (609)
Q Consensus 402 ~~~~m~~~g~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~ 473 (609)
.|++.. .| +...+..|... + ...+++++|..+|++..+.| +...+..|...|. .| ++++|++.|
T Consensus 239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 999987 33 34455555555 3 56899999999999998766 6677777888887 55 999999999
Q ss_pred HhCCCCCCHhhHHHHHHHHHh----CCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhC
Q 007288 474 KSMPFKPDESVWGPLLGACKE----HRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA----EGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 474 ~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~ 545 (609)
++.- .-+...+..|...|.. ..++++|...++++.+.+ ++.....|+.+|.. ..+.++|..++++..+.
T Consensus 311 ~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 311 EKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp HTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred HHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 9987 5577777777777766 449999999999998754 57788999999985 46899999999999998
Q ss_pred CCc
Q 007288 546 GSK 548 (609)
Q Consensus 546 ~~~ 548 (609)
|..
T Consensus 388 g~~ 390 (452)
T 3e4b_A 388 DTP 390 (452)
T ss_dssp CCH
T ss_pred CCH
Confidence 864
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=1.8e-12 Score=122.35 Aligned_cols=175 Identities=12% Similarity=-0.039 Sum_probs=80.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 007288 353 NALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429 (609)
Q Consensus 353 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 429 (609)
..+..+|...|++++|...|+...+ .+...|..+...|...|++++|+..|++..+. .+.+...+..+...+...+
T Consensus 78 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 78 EYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNK 156 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHH
Confidence 3344444444444444444443331 12234444444444444444444444444432 1112233333331222233
Q ss_pred CHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCC---HHHHHHHHHhC----CCCCC------HhhHHHHHHHHHhCC
Q 007288 430 LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR---VKEAYELIKSM----PFKPD------ESVWGPLLGACKEHR 496 (609)
Q Consensus 430 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~------~~~~~~l~~~~~~~~ 496 (609)
++++|...|+++.+.. +.+...+..+...+...|+ +++|...+++. ...|+ ...|..+...+...|
T Consensus 157 ~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 157 EYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235 (272)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC
Confidence 5555555555554322 1123444444444444444 44444444333 11122 135555667777778
Q ss_pred ChHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 007288 497 LPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529 (609)
Q Consensus 497 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 529 (609)
++++|...++++++++|+++.....+.......
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 236 DKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred CHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 888888888888888887776666665555443
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.49 E-value=7.4e-12 Score=116.58 Aligned_cols=204 Identities=10% Similarity=-0.023 Sum_probs=150.6
Q ss_pred HhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHH
Q 007288 315 FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYG 391 (609)
Q Consensus 315 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 391 (609)
..+..+...+...|+++.|...++.+.+.. +.+...+..+..+|...|++++|...|+++.+ .+...+..+...|.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 345555556666666666666666666553 33455666677777777777777777776652 35567777788888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHH
Q 007288 392 AHGHGKEAIELFDEMVKSGVRPD-RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470 (609)
Q Consensus 392 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 470 (609)
..|++++|.+.++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888877434554 4577778888888999999999998886654 335777888889999999999999
Q ss_pred HHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHH
Q 007288 471 ELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520 (609)
Q Consensus 471 ~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 520 (609)
..++++ ...| +...+..+...+...|++++|...++++.+..|+++....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 999887 3334 5566777778889999999999999999999997665443
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.49 E-value=3.6e-12 Score=116.26 Aligned_cols=196 Identities=10% Similarity=-0.016 Sum_probs=129.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007288 349 LALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTAC 425 (609)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 425 (609)
...+..+...+...|++++|...|+.+.+ .+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 34445555566666666666666655442 234566666666777777777777777766642 23455666677777
Q ss_pred hcc-CCHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHH
Q 007288 426 SHA-GLVDEGLKYFKSMNDYNVNP-NKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLG 501 (609)
Q Consensus 426 ~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 501 (609)
... |++++|...++++.+.+..| +...+..+...+...|++++|++.++++ ...| +...+..+..++...|++++|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHH
Confidence 777 77777777777775522222 2456666777777777777777777665 2223 356666677777777777778
Q ss_pred HHHHHHHhccCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 502 KLAALRVLDLKP-NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 502 ~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
...++++++..| .+...+..++..+...|+.++|..+++.+.+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 777777777777 77777777777777778887777777777653
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.48 E-value=7.9e-13 Score=122.36 Aligned_cols=198 Identities=9% Similarity=0.086 Sum_probs=131.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007288 348 NLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTA 424 (609)
Q Consensus 348 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 424 (609)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 344555566666777777777777776643 245566777777777888888888888777642 2355677777777
Q ss_pred HhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHH
Q 007288 425 CSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGK 502 (609)
Q Consensus 425 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 502 (609)
+...|++++|...++++.+.. +.+...+..+...+...|++++|++.++++ ...| +...+..+...+...|++++|.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888888776544 235667777778888888888888888776 2223 5666777777888888888888
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 503 LAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 503 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
..++++++..|.+...+..++.+|...|++++|...++++.+..+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 180 SQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 888888888887788888888888888888888888888876433
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.48 E-value=1.1e-12 Score=121.36 Aligned_cols=213 Identities=10% Similarity=0.079 Sum_probs=152.6
Q ss_pred CHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHH
Q 007288 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIG 389 (609)
Q Consensus 313 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 389 (609)
....+..+...+...|+++.|...++.+.+.. +.+...+..+...|.+.|++++|...|+.+.+ .+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 34455556666667777777777777776643 34566677777788888888888888877652 356678888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 007288 390 YGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469 (609)
Q Consensus 390 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 469 (609)
+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 899999999999999988753 3466788888889999999999999999986654 34677888899999999999999
Q ss_pred HHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 007288 470 YELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA 528 (609)
Q Consensus 470 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 528 (609)
++.++++ ...| +..++..+..++...|++++|...++++++..|++...+..+......
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC----
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhh
Confidence 9999887 2233 567888888999999999999999999999999888877776655443
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.47 E-value=1.3e-11 Score=112.48 Aligned_cols=208 Identities=10% Similarity=-0.048 Sum_probs=164.8
Q ss_pred CHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHH
Q 007288 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIG 389 (609)
Q Consensus 313 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 389 (609)
+...+..+...+...|+++.|...++.+.+.. +.+...+..+..+|...|++++|...|+.+.+ .+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 34556677777788888888888888877764 34566778888888888888888888887763 356678888889
Q ss_pred HHhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHH
Q 007288 390 YGAH-GHGKEAIELFDEMVKSGVRPD-RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467 (609)
Q Consensus 390 ~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 467 (609)
+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 9999 999999999999988444454 4578888889999999999999999986654 235778888999999999999
Q ss_pred HHHHHHHhC-CCC--CCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHH
Q 007288 468 EAYELIKSM-PFK--PDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522 (609)
Q Consensus 468 ~A~~~~~~~-~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 522 (609)
+|.+.++++ ... .+...+..+...+...|+.+.+...++.+.+..|+++.....+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 999999887 222 3566676777888999999999999999999999776655443
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.47 E-value=4.5e-12 Score=119.53 Aligned_cols=229 Identities=8% Similarity=-0.025 Sum_probs=183.3
Q ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCcc----hHHHHHHH
Q 007288 316 TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--RDLV----TWTSMMIG 389 (609)
Q Consensus 316 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~li~~ 389 (609)
.+......+...|+++.|...++.+.+.. +.+...+..+..+|...|++++|...|+...+ ++.. .|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 44556667788899999999999888764 34555788888899999999999999988764 2222 48889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 007288 390 YGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469 (609)
Q Consensus 390 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 469 (609)
+...|++++|++.|++..+.. +.+..++..+...+...|++++|+..+++..+.. +.+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999853 2355789999999999999999999999997653 33567777777344456699999
Q ss_pred HHHHHhC-CCCCC-HhhHHHHHHHHHhCCC---hHHHHHHHHHHhccC---CCC-----cchHHHHHHHHHhcCChHHHH
Q 007288 470 YELIKSM-PFKPD-ESVWGPLLGACKEHRL---PNLGKLAALRVLDLK---PNM-----MGTYIILSNIYAAEGKWEEFA 536 (609)
Q Consensus 470 ~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~ 536 (609)
++.++++ ...|+ ...+..+..++...++ +++|...++++++.. |+. ...|..++..|...|++++|.
T Consensus 162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999988 34454 5677777788888888 888999999998865 431 257888999999999999999
Q ss_pred HHHHHHHhCCC
Q 007288 537 KFRKIMRGMGS 547 (609)
Q Consensus 537 ~~~~~m~~~~~ 547 (609)
+.+++..+..+
T Consensus 242 ~~~~~al~~~p 252 (272)
T 3u4t_A 242 AAWKNILALDP 252 (272)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHhcCc
Confidence 99999987544
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.46 E-value=3.1e-12 Score=125.93 Aligned_cols=228 Identities=11% Similarity=0.107 Sum_probs=179.7
Q ss_pred HhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHHhcCC---CCcchHHHHHHHH
Q 007288 315 FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGN-ISDSQKIFSEMSD---RDLVTWTSMMIGY 390 (609)
Q Consensus 315 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~ 390 (609)
..|..+...+...|++++|...++.+++.. +-+...|+.+..++...|+ +++|+..|+++.+ .+...|+.+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 345556666667777777877777777664 4456677778888888886 8888888888773 3567888888899
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhh-cCCHHHH
Q 007288 391 GAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR-AGRVKEA 469 (609)
Q Consensus 391 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A 469 (609)
...|++++|+..|+++++.. .-+...|..+..++...|++++|+..++++.+.+. -+...|+.+..++.+ .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHH
Confidence 99999999999999998853 23566888889999999999999999999977663 367888888888888 6665777
Q ss_pred -----HHHHHhC-CCCC-CHhhHHHHHHHHHhCC--ChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC---------C
Q 007288 470 -----YELIKSM-PFKP-DESVWGPLLGACKEHR--LPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEG---------K 531 (609)
Q Consensus 470 -----~~~~~~~-~~~p-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------~ 531 (609)
++.+++. ...| +...|..+..++...| ++++|.+.++++ +.+|++...+..++.+|.+.| .
T Consensus 255 ~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~ 333 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDI 333 (382)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence 4666665 4455 4668888888888888 689999999988 889999999999999999875 2
Q ss_pred hHHHHHHHHHH-HhCC
Q 007288 532 WEEFAKFRKIM-RGMG 546 (609)
Q Consensus 532 ~~~A~~~~~~m-~~~~ 546 (609)
+++|+++++++ .+.+
T Consensus 334 ~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 334 LNKALELCEILAKEKD 349 (382)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhC
Confidence 58999999998 6643
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.46 E-value=3.3e-11 Score=113.73 Aligned_cols=222 Identities=12% Similarity=-0.040 Sum_probs=164.8
Q ss_pred hHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHh----hccHHHHHHHHHHHHHhCCCCchhHHHHH
Q 007288 281 ITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACAT----LAALSCGQQVHAGIVRRGLDGNLALANAL 355 (609)
Q Consensus 281 ~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 355 (609)
.++..+...+...+ .++|...|++..+. -+...+..+...+.. .+++++|...+++..+.+ +...+..+
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 34444445555555 55555555555552 234455566666666 777777777777777665 56666777
Q ss_pred HHHHHh----cCCHHHHHHHHHhcCC-CCcchHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 007288 356 IDMYAK----CGNISDSQKIFSEMSD-RDLVTWTSMMIGYGA----HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS 426 (609)
Q Consensus 356 ~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 426 (609)
..+|.. .+++++|...|+...+ .+...+..+...|.. .+++++|+..|++..+.+ +...+..+...+.
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHH
Confidence 777777 8888888888877664 355677778888888 899999999999988865 5667777777787
Q ss_pred c----cCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----
Q 007288 427 H----AGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR----AGRVKEAYELIKSMPFKPDESVWGPLLGACKE---- 494 (609)
Q Consensus 427 ~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~---- 494 (609)
. .+++++|...|++..+.+ +...+..+...|.. .+++++|++.+++.-...+...+..+...+..
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~ 234 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGV 234 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCc
Confidence 7 889999999999987654 46777788888888 99999999999887212236677778888888
Q ss_pred CCChHHHHHHHHHHhccCCC
Q 007288 495 HRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 495 ~~~~~~a~~~~~~~~~~~p~ 514 (609)
.+++++|...++++.+.+|+
T Consensus 235 ~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 235 TRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp SCCSTTHHHHHHHHHHHTCH
T ss_pred ccCHHHHHHHHHHHHHcCCH
Confidence 89999999999999999884
No 54
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.45 E-value=7.5e-12 Score=110.30 Aligned_cols=167 Identities=12% Similarity=0.121 Sum_probs=141.2
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 007288 379 DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVD 458 (609)
Q Consensus 379 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 458 (609)
+...|..+...|...|++++|++.|++..+.. +-+..++..+...+.+.|++++|...+........ .+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 45678888889999999999999999988852 23556888888899999999999999998866543 35667777888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHH
Q 007288 459 LLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFA 536 (609)
Q Consensus 459 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 536 (609)
.+...++++.|.+.+.+. ...| +...+..+..++.+.|++++|+..++++++++|.++.++..++.+|.+.|++++|+
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 889999999999998887 3334 56778888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC
Q 007288 537 KFRKIMRGMGS 547 (609)
Q Consensus 537 ~~~~~m~~~~~ 547 (609)
+.|++..+..+
T Consensus 162 ~~~~~al~~~p 172 (184)
T 3vtx_A 162 KYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHTTH
T ss_pred HHHHHHHhCCc
Confidence 99999987543
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.44 E-value=5.1e-12 Score=119.33 Aligned_cols=219 Identities=13% Similarity=-0.003 Sum_probs=179.7
Q ss_pred hhccHHHHHHHHHHHHHhCC---CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHH
Q 007288 326 TLAALSCGQQVHAGIVRRGL---DGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEA 399 (609)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 399 (609)
..|++++|...++.+.+... +.+..++..+...|...|++++|...|+.+.+ .+..+|..+...|...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 45889999999999987642 22467788899999999999999999999873 3578899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 007288 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PF 478 (609)
Q Consensus 400 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 478 (609)
...|+++.+.. +.+..++..+...+...|++++|...++++.+.. |+..........+...|++++|...+++. ..
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999999853 3356789999999999999999999999997754 44444455556667789999999999766 22
Q ss_pred CCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC----CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 479 KPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN----MMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 479 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
.|+......++..+...++.++|...++++++..|. +...+..++.+|...|++++|...+++..+..+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 174 SDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp SCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred CCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 333333345778888889999999999999887763 367899999999999999999999999988643
No 56
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.44 E-value=5.7e-12 Score=114.31 Aligned_cols=191 Identities=13% Similarity=0.040 Sum_probs=100.3
Q ss_pred CHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcchHHHHHHH
Q 007288 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--R-DLVTWTSMMIG 389 (609)
Q Consensus 313 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~ 389 (609)
+...+..+...+...|++++|...++...+.. +.+...+..+..++.+.|++++|...|++..+ | +...+..+..+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 33444444455555555555555555554433 23444455555555555555555555555442 2 33455555555
Q ss_pred HHhc-----------CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHH
Q 007288 390 YGAH-----------GHGKEAIELFDEMVKSGVRP-DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVV 457 (609)
Q Consensus 390 ~~~~-----------g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 457 (609)
+... |++++|+..|++..+. .| +...+..+...+...|++++|+..|++..+.. .+...+..+.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 5555 6666666666666653 33 34456666666666666666666666665555 4566666666
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHH
Q 007288 458 DLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRV 508 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 508 (609)
.+|...|++++|+..|++. ...| +...+..+..++...|++++|...+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666665 2233 3455555666666666666666666554
No 57
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.43 E-value=1.5e-11 Score=121.04 Aligned_cols=246 Identities=9% Similarity=0.071 Sum_probs=199.8
Q ss_pred hhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhcc-HHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007288 280 LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAA-LSCGQQVHAGIVRRGLDGNLALANALID 357 (609)
Q Consensus 280 ~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 357 (609)
...|+.+...+...| .++|+..|++.+... +-+...|..+..++...|+ +++|...++++.+.. +.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 356777778888888 899999999888742 2246677888888889996 999999999999876 456788899999
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCCHHH
Q 007288 358 MYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH-AGLVDE 433 (609)
Q Consensus 358 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~ 433 (609)
++.+.|++++|+..|+++.+ .+...|..+..++...|++++|+..++++++.. .-+...|+.+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999999873 467889999999999999999999999999853 2356788889988888 566577
Q ss_pred H-----HHHHHHhhhcCCCCChhHHHHHHHHHhhcC--CHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhCC---------
Q 007288 434 G-----LKYFKSMNDYNVNPNKEIYGCVVDLLGRAG--RVKEAYELIKSMPFKPD-ESVWGPLLGACKEHR--------- 496 (609)
Q Consensus 434 a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~~--------- 496 (609)
| +..+++..+... -+...|..+..++...| ++++|++.+.++...|+ ...+..+..++.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 7 588888876552 35778888999999888 68999999988855554 567777788887764
Q ss_pred ChHHHHHHHHHH-hccCCCCcchHHHHHHHHHhc
Q 007288 497 LPNLGKLAALRV-LDLKPNMMGTYIILSNIYAAE 529 (609)
Q Consensus 497 ~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 529 (609)
..++|+.+++++ .+++|.....|..++..+...
T Consensus 333 ~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 333 ILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 258999999999 999998888888887776543
No 58
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.43 E-value=1.7e-12 Score=132.83 Aligned_cols=208 Identities=6% Similarity=-0.037 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHH
Q 007288 330 LSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNI-SDSQKIFSEMSD--R-DLVTWTSMMIGYGAHGHGKEAIELFDE 405 (609)
Q Consensus 330 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 405 (609)
++.+...+...... .+.+...+..+..+|...|++ ++|...|++..+ | +...|..+..+|...|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555555554433 234667778888888888999 999988888763 3 567899999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhcc---------CCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc--------CCHHH
Q 007288 406 MVKSGVRPDRIVFMAVLTACSHA---------GLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA--------GRVKE 468 (609)
Q Consensus 406 m~~~g~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~ 468 (609)
..+. .|+...+..+...+... |++++|+..+++..+.. +.+...|..+..+|... |++++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 9984 57778899999999999 99999999999997765 33678889999999998 99999
Q ss_pred HHHHHHhC-CCCC----CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 007288 469 AYELIKSM-PFKP----DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKI 541 (609)
Q Consensus 469 A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (609)
|++.|++. ...| +...|..+..++...|++++|...++++++++|++...+..++.++...|++++|++.+.+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999988 4455 6788899999999999999999999999999999999999999999999999999975543
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.42 E-value=2e-12 Score=130.23 Aligned_cols=255 Identities=13% Similarity=0.040 Sum_probs=166.3
Q ss_pred HHHHhCC-chHHHHHHHHhHHCCCCCC-H----HhHHHHHHHHHhhccHHHHHHHHHHHHHh----C-CCCchhHHHHHH
Q 007288 288 AGYEKSG-SSECLNMFSKMKSERFSPN-C----FTFTSIIAACATLAALSCGQQVHAGIVRR----G-LDGNLALANALI 356 (609)
Q Consensus 288 ~~~~~~~-~~~a~~~~~~m~~~~~~p~-~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~ 356 (609)
..+...| +++|...|++..+.. |+ . ..+..+...+...|+++.|...+++..+. + .+....++..+.
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 3344444 455555555444431 22 1 24555555556666666666666655432 1 112234556666
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-----C----CcchHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHC-
Q 007288 357 DMYAKCGNISDSQKIFSEMSD-----R----DLVTWTSMMIGYGAHGH-----------------GKEAIELFDEMVKS- 409 (609)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~- 409 (609)
..|...|++++|...|++..+ . ...++..+...|...|+ +++|++.+++..+.
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 677777777777777666542 1 22356667777777788 78888777776542
Q ss_pred ---CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCC-CC----hhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-
Q 007288 410 ---GVRPD-RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN-PN----KEIYGCVVDLLGRAGRVKEAYELIKSM-PF- 478 (609)
Q Consensus 410 ---g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~- 478 (609)
+-.+. ..++..+...+...|++++|...+++..+.... .+ ...+..+...|...|++++|.+.+++. ..
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 11111 236777778888889999998888887432211 11 236778888888999999998888776 11
Q ss_pred --CC----CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC------cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 479 --KP----DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM------MGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 479 --~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
.. ...++..+..++...|++++|...+++++++.+.. ...+..++.+|...|++++|...+++..+
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 294 VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11 14566777788999999999999999988764422 34788899999999999999999998875
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.40 E-value=9.1e-12 Score=124.92 Aligned_cols=94 Identities=6% Similarity=-0.014 Sum_probs=49.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C----hhHHHHHHHHHHhCC-chHHHHHHHHhHHC----CCCC-CH
Q 007288 248 NLPVMNSILDMYCRFDCLSDANQYFDEMTE--K-D----LITWNTIIAGYEKSG-SSECLNMFSKMKSE----RFSP-NC 314 (609)
Q Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~~-~~~a~~~~~~m~~~----~~~p-~~ 314 (609)
....+......+...|++++|...|++..+ + + ...|..+...+...| +++|...+++.... +-.| ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 444555666667777777777777766532 2 2 134555555666666 66666666554331 1111 12
Q ss_pred HhHHHHHHHHHhhccHHHHHHHHHHHH
Q 007288 315 FTFTSIIAACATLAALSCGQQVHAGIV 341 (609)
Q Consensus 315 ~t~~~ll~~~~~~~~~~~a~~~~~~~~ 341 (609)
..+..+...+...|+++.|...+....
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al 114 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHL 114 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 234444445555555555555555444
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.39 E-value=9.9e-12 Score=124.66 Aligned_cols=289 Identities=10% Similarity=0.029 Sum_probs=175.7
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----C----ChhH
Q 007288 216 SFSIAVRACASTGWVSFGKLIHAAVIKHGFGSN----LPVMNSILDMYCRFDCLSDANQYFDEMTE-----K----DLIT 282 (609)
Q Consensus 216 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~~ 282 (609)
.+......+...|++++|...++.+.+.+ +.+ ..++..+...|...|++++|...|++..+ . ....
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 34444444555555556655555555542 112 23555666666666777766666655421 1 2346
Q ss_pred HHHHHHHHHhCC-chHHHHHHHHhHHCCC-CCC----HHhHHHHHHHHHhhcc--------------------HHHHHHH
Q 007288 283 WNTIIAGYEKSG-SSECLNMFSKMKSERF-SPN----CFTFTSIIAACATLAA--------------------LSCGQQV 336 (609)
Q Consensus 283 ~~~li~~~~~~~-~~~a~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~~~--------------------~~~a~~~ 336 (609)
+..+...|...| +++|...+++...... .++ ..++..+...+...|+ ++.|...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 777888888999 9999998888765210 011 3356666666777777 6666665
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC
Q 007288 337 HAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR--DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG-VRP 413 (609)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p 413 (609)
+....+. +.....+ ...++..+...|...|++++|...+++..+.. -.+
T Consensus 170 ~~~al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 221 (406)
T 3sf4_A 170 YEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 221 (406)
T ss_dssp HHHHHHH----------------------------HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHH----------------------------HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC
Confidence 5544321 1111100 11345556666666677777777666665421 011
Q ss_pred C----HHHHHHHHHHHhccCCHHHHHHHHHHhhhcC----CCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC
Q 007288 414 D----RIVFMAVLTACSHAGLVDEGLKYFKSMNDYN----VNP-NKEIYGCVVDLLGRAGRVKEAYELIKSM----PFKP 480 (609)
Q Consensus 414 ~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p 480 (609)
+ ..++..+...+...|++++|...+++..+.. ..+ ...++..+...|...|++++|.+.+++. +..+
T Consensus 222 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 301 (406)
T 3sf4_A 222 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC
Confidence 1 1266667777777888888887777763321 111 1456677778888888888888887766 1111
Q ss_pred C----HhhHHHHHHHHHhCCChHHHHHHHHHHhccCC------CCcchHHHHHHHHHhcCChH
Q 007288 481 D----ESVWGPLLGACKEHRLPNLGKLAALRVLDLKP------NMMGTYIILSNIYAAEGKWE 533 (609)
Q Consensus 481 ~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~ 533 (609)
+ ..++..+..++...|++++|...+++++++.+ ....++..++.+|...|+..
T Consensus 302 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 302 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 2 44666777888899999999999998877532 23556777888888887764
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.38 E-value=1.5e-11 Score=119.55 Aligned_cols=256 Identities=15% Similarity=0.101 Sum_probs=173.1
Q ss_pred HHHHhCC-chHHHHHHHHhHHCCCCCC-----HHhHHHHHHHHHhhccHHHHHHHHHHHHHh----CCC-CchhHHHHHH
Q 007288 288 AGYEKSG-SSECLNMFSKMKSERFSPN-----CFTFTSIIAACATLAALSCGQQVHAGIVRR----GLD-GNLALANALI 356 (609)
Q Consensus 288 ~~~~~~~-~~~a~~~~~~m~~~~~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~ 356 (609)
..+...| +++|...|++..+.. |+ ...+..+...+...|+++.|...+....+. +.. ....++..+.
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 3444445 555555555554432 22 234555556666666666666666654432 111 1244566677
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-----CC----cchHHHHHHHHHhcCC--------------------HHHHHHHHHHHH
Q 007288 357 DMYAKCGNISDSQKIFSEMSD-----RD----LVTWTSMMIGYGAHGH--------------------GKEAIELFDEMV 407 (609)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~ 407 (609)
..|...|++++|...+++..+ ++ ..++..+...+...|+ +++|.+.+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 777777888777777776542 12 2366777777888888 888888887765
Q ss_pred HC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCC-C----ChhHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 007288 408 KS----GVRPD-RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN-P----NKEIYGCVVDLLGRAGRVKEAYELIKSM- 476 (609)
Q Consensus 408 ~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 476 (609)
.. +-.|. ..++..+...+...|++++|...+++..+.... + ...++..+...+...|++++|.+.+++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 42 11111 236777888888999999999999887432111 1 1336778888999999999999988876
Q ss_pred ---CCCCC----HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC------cchHHHHHHHHHhcCChHHHHHHHHHHH
Q 007288 477 ---PFKPD----ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM------MGTYIILSNIYAAEGKWEEFAKFRKIMR 543 (609)
Q Consensus 477 ---~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 543 (609)
+..++ ..++..+...+...|++++|...++++++..|.. ..++..++.+|...|++++|...+++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 11112 4566777788999999999999999998865422 3478889999999999999999999998
Q ss_pred hC
Q 007288 544 GM 545 (609)
Q Consensus 544 ~~ 545 (609)
+.
T Consensus 331 ~~ 332 (338)
T 3ro2_A 331 EI 332 (338)
T ss_dssp HC
T ss_pred HH
Confidence 74
No 63
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.37 E-value=3.7e-09 Score=111.13 Aligned_cols=424 Identities=10% Similarity=0.021 Sum_probs=264.0
Q ss_pred CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCC---hHHHHHHHHHHHHhCC-CCCcchh
Q 007288 75 RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKS---LSNAALVHGMAIKEGL-EGSIYVE 150 (609)
Q Consensus 75 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~~~ 150 (609)
.|..+|..++..+.+.+.++.+..+|+++... .+.....|...+..-.+.+. ++.+..+|++.+...+ .|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 36677888888888888888888888888774 33355566667777667777 8888888888777652 3566677
Q ss_pred hHHHHHHHhcCCCH--------HHHHHHHccCC-------CCChhhHHHHHHHHHh---------cCChhhHHHHHHHHH
Q 007288 151 NSLMDVYATCCISM--------DNARLVFNDMK-------WKNDVSWTTLITGYAH---------SGNGYGGLGVFKEML 206 (609)
Q Consensus 151 ~~ll~~~~~~g~~~--------~~A~~~~~~~~-------~~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~ 206 (609)
...+....+.+ +. +...++|+... ..+...|...+..... +++++.+..+|+..+
T Consensus 143 ~~Yl~f~~~~~-~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 143 LSYITYVRKKN-DIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHS-CSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhc-ccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 77776655544 32 23345565421 1234566666654432 334566777777766
Q ss_pred HCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh-------cCC--
Q 007288 207 LEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE-------MTE-- 277 (609)
Q Consensus 207 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~-- 277 (609)
......-..+|... ..+.+.-+...+..++.+.. .+++.|...+.+ +..
T Consensus 222 ~iP~~~~~~~w~~Y-~~fe~~~~~~~a~~~~~e~~---------------------~~y~~Ar~~~~e~~~~~~~l~r~~ 279 (679)
T 4e6h_A 222 CQPMDCLESMWQRY-TQWEQDVNQLTARRHIGELS---------------------AQYMNARSLYQDWLNITKGLKRNL 279 (679)
T ss_dssp TSCCSSHHHHHHHH-HHHHHHHCTTTHHHHHHHHH---------------------HHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred hCccHHHHHHHHHH-HHHHHhcCcchHHHHHHHhh---------------------HHHHHHHHHHHHHHHHHHhHhhcc
Confidence 42111111222211 11111101111222211110 112222222221 110
Q ss_pred ------------C--C------hhHHHHHHHHHHhCC--c------hHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhcc
Q 007288 278 ------------K--D------LITWNTIIAGYEKSG--S------SECLNMFSKMKSERFSPNCFTFTSIIAACATLAA 329 (609)
Q Consensus 278 ------------~--~------~~~~~~li~~~~~~~--~------~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 329 (609)
| + ...|...+.---..+ . ..+..+|++.+.. ++-+...|......+...|+
T Consensus 280 p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~ 358 (679)
T 4e6h_A 280 PITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNT 358 (679)
T ss_dssp CSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSC
T ss_pred ccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCc
Confidence 0 0 123444444333322 1 2234567776654 23356667777777778888
Q ss_pred HHHHH-HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------------CC------------cchH
Q 007288 330 LSCGQ-QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD-------------RD------------LVTW 383 (609)
Q Consensus 330 ~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~ 383 (609)
.+.|. .+++..... ++.+...+...+....+.|++++|..+|+.+.+ |+ ...|
T Consensus 359 ~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vW 437 (679)
T 4e6h_A 359 DSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVY 437 (679)
T ss_dssp CTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHH
Confidence 88896 999998875 355666777888888899999999999998763 31 2357
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHh
Q 007288 384 TSMMIGYGAHGHGKEAIELFDEMVKS-GVRPDRIVFMAVLTACSH-AGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461 (609)
Q Consensus 384 ~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 461 (609)
...+....+.|+.+.|..+|.+..+. +. +....|...+..-.+ .++++.|..+|+...+. ++-+...+...++...
T Consensus 438 i~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 438 CVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHH
Confidence 77777778889999999999999886 21 122333332222223 35699999999999654 3446667778889888
Q ss_pred hcCCHHHHHHHHHhC-CCCC----CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007288 462 RAGRVKEAYELIKSM-PFKP----DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527 (609)
Q Consensus 462 ~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 527 (609)
..|+.+.|..+|++. ...| ....|...+..-.+.|+.+.+..+.+++.+..|++ .....+++-|.
T Consensus 516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~-~~~~~f~~ry~ 585 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV-NKLEEFTNKYK 585 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC-CHHHHHHHHTC
T ss_pred hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-cHHHHHHHHhc
Confidence 999999999999987 3333 34678888898999999999999999999999965 44555555543
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.35 E-value=2.1e-11 Score=121.33 Aligned_cols=223 Identities=9% Similarity=-0.024 Sum_probs=149.6
Q ss_pred HHHHHhhccHHHHHHHHHHHHHh----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC-----cchHHH
Q 007288 321 IAACATLAALSCGQQVHAGIVRR----GLDG-NLALANALIDMYAKCGNISDSQKIFSEMSD-----RD-----LVTWTS 385 (609)
Q Consensus 321 l~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~ 385 (609)
...+...|+++.|...+....+. +-.+ ...++..+..+|...|+++.|...+++..+ ++ ..+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 34445667777777777666543 1111 234566677777777777777777666542 11 246777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHhccCCHHHHHHHHHHhhhc----CC-CCChhHHHH
Q 007288 386 MMIGYGAHGHGKEAIELFDEMVKSGV-RPDR----IVFMAVLTACSHAGLVDEGLKYFKSMNDY----NV-NPNKEIYGC 455 (609)
Q Consensus 386 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ 455 (609)
+...|...|++++|++.+++..+... .++. .++..+...|...|++++|+..+++..+. +. +....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 77888888888888888887765210 1111 36777888888888888888888887542 22 334566778
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CC-----CCC-HhhHHHHHHHHHhCCC---hHHHHHHHHHHhccCCCCcchHHHHHHH
Q 007288 456 VVDLLGRAGRVKEAYELIKSM-PF-----KPD-ESVWGPLLGACKEHRL---PNLGKLAALRVLDLKPNMMGTYIILSNI 525 (609)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~~-~~-----~p~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 525 (609)
+...|.+.|++++|.+.+++. .. .|. ...+..+...+...|+ +++|...+++. ...|.....+..++..
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHH
Confidence 888888888888888888776 11 121 2234556677788888 67777777766 3333445677889999
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 007288 526 YAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 526 ~~~~g~~~~A~~~~~~m~~ 544 (609)
|...|++++|...+++..+
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999988865
No 65
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.32 E-value=5.2e-12 Score=121.57 Aligned_cols=230 Identities=15% Similarity=0.143 Sum_probs=138.8
Q ss_pred HhHHHHHHHHHhhccHHHHHHHHHHHHHh-------CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C--
Q 007288 315 FTFTSIIAACATLAALSCGQQVHAGIVRR-------GLDGNLALANALIDMYAKCGNISDSQKIFSEMSD-------R-- 378 (609)
Q Consensus 315 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~-- 378 (609)
.++..+...+...|++++|..+++.+.+. ..+....++..+...|...|++++|...+++..+ +
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34555555555666666666666655542 2223344556666666666777666666665542 1
Q ss_pred --CcchHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhc-----
Q 007288 379 --DLVTWTSMMIGYGAHGHGKEAIELFDEMVKS------GVRPD-RIVFMAVLTACSHAGLVDEGLKYFKSMNDY----- 444 (609)
Q Consensus 379 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----- 444 (609)
...++..+...|...|++++|...++++.+. +-.|+ ...+..+...+...|++++|..+++++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 2345666777777777888887777777653 22222 236777777888888888888888877443
Q ss_pred -C-CCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC----------CCCCHh-------hHHHHHHHHHhCCChHHHHHHH
Q 007288 445 -N-VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMP----------FKPDES-------VWGPLLGACKEHRLPNLGKLAA 505 (609)
Q Consensus 445 -~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~~~-------~~~~l~~~~~~~~~~~~a~~~~ 505 (609)
+ .+....++..+...|...|++++|.+.++++- ..+... .+..+...+...+.+.++...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 1 12234567777888888888888888877661 111111 1222223345566677777788
Q ss_pred HHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 506 LRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 506 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
+......|....++..++.+|.+.|++++|.+++++..+
T Consensus 268 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 268 KACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888999999999999999999999998865
No 66
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.32 E-value=2.2e-11 Score=129.54 Aligned_cols=162 Identities=15% Similarity=0.183 Sum_probs=137.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 007288 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD-RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVD 458 (609)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 458 (609)
..+|+.|...|.+.|++++|++.|++.++. .|+ ..++..+..+|.+.|++++|+..|++..+.+. -+...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 456788888888888888888888888874 454 56888888888899999999999998876552 25778888899
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHH
Q 007288 459 LLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFA 536 (609)
Q Consensus 459 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 536 (609)
+|...|++++|++.|++. .+.| +...|..+..++...|++++|+..++++++++|++...+..++.+|...|++++|.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 999999999999988887 4455 46788888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 007288 537 KFRKIMRG 544 (609)
Q Consensus 537 ~~~~~m~~ 544 (609)
+.+++..+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888764
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.32 E-value=5.7e-11 Score=104.57 Aligned_cols=166 Identities=12% Similarity=0.083 Sum_probs=133.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007288 348 NLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTA 424 (609)
Q Consensus 348 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 424 (609)
+..+|..+...|.+.|++++|...|++..+ .+..+|..+..+|...|++++|+..+....... .-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 456677788888888888888888887763 355678888888888999999999998888753 3345677777788
Q ss_pred HhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHH
Q 007288 425 CSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGK 502 (609)
Q Consensus 425 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 502 (609)
+...++++.|...+....+.. +.+...+..+...|.+.|++++|++.|++. ...| +...|..+..++.+.|++++|+
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 888899999999999886654 336778888899999999999999999887 3444 5677888889999999999999
Q ss_pred HHHHHHhccCCCC
Q 007288 503 LAALRVLDLKPNM 515 (609)
Q Consensus 503 ~~~~~~~~~~p~~ 515 (609)
..++++++++|++
T Consensus 162 ~~~~~al~~~p~~ 174 (184)
T 3vtx_A 162 KYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHTTHHH
T ss_pred HHHHHHHhCCccC
Confidence 9999999999854
No 68
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.32 E-value=4.3e-11 Score=120.37 Aligned_cols=278 Identities=11% Similarity=0.013 Sum_probs=155.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH----hhHHHHHHHHHccCCchhHHHHHHHHHHhC-----CCCChhHH
Q 007288 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP----YSFSIAVRACASTGWVSFGKLIHAAVIKHG-----FGSNLPVM 252 (609)
Q Consensus 182 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g-----~~~~~~~~ 252 (609)
+..+...+...|++++|+..|+++...+.. +. ..+..+...+...|++++|...++++.+.. .+....++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 444555666777777777777777665222 22 345555566666666666666666655431 01123344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCchHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhcc---
Q 007288 253 NSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAA--- 329 (609)
Q Consensus 253 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~--- 329 (609)
..+...|...|++++|...|++.. +++.... .......++..+...+...|+
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al-----------------------~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~ 184 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHL-----------------------TLARQLG--DRLSEGRALYNLGNVYHAKGKHLG 184 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-----------------------HHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-----------------------HHHHHhh--chHHHHHHHHHHHHHHHHcCcccc
Confidence 445555555555555555544321 1111110 001122345555566666666
Q ss_pred --------------HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--CcchHHHHHHHHHhc
Q 007288 330 --------------LSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR--DLVTWTSMMIGYGAH 393 (609)
Q Consensus 330 --------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~ 393 (609)
++.|...+.+..+. ......+ ...++..+...|...
T Consensus 185 ~~~~~~~~~~a~~~~~~A~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~ 236 (411)
T 4a1s_A 185 QRNPGKFGDDVKEALTRAVEFYQENLKL----------------------------MRDLGDRGAQGRACGNLGNTYYLL 236 (411)
T ss_dssp HHSTTCCCHHHHHHHHHHHHHHHHHHHH----------------------------HHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHHHH----------------------------HHHcCCHHHHHHHHHHHHHHHHHc
Confidence 55555555543321 1111110 112455555666666
Q ss_pred CCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCC-----CChhHHHHHHHHHhhc
Q 007288 394 GHGKEAIELFDEMVKSGV-RPD----RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN-----PNKEIYGCVVDLLGRA 463 (609)
Q Consensus 394 g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~ 463 (609)
|++++|+..+++..+... .++ ..++..+...+...|++++|...+++..+.... ....++..+...|...
T Consensus 237 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 316 (411)
T 4a1s_A 237 GDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLL 316 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 666666666666554210 011 126666777777778888777777766332111 1145667777888888
Q ss_pred CCHHHHHHHHHhC-------CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCC
Q 007288 464 GRVKEAYELIKSM-------PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 464 g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 513 (609)
|++++|.+.+++. +..+ ...++..+..++...|++++|...+++++++.+
T Consensus 317 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 317 HEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 8888888887766 1111 134666777888899999999999999988776
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.30 E-value=6.9e-11 Score=114.87 Aligned_cols=132 Identities=11% Similarity=0.008 Sum_probs=76.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCC-CC----hh
Q 007288 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGV-RPD----RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN-PN----KE 451 (609)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~ 451 (609)
.+..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+.... .+ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 344455555556666666666655543100 011 125566666667777777777777665321110 11 44
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CC---CCC----HhhHHHHHHHHHhCCChHHHHHHHHHHhccCC
Q 007288 452 IYGCVVDLLGRAGRVKEAYELIKSM-PF---KPD----ESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 513 (609)
++..+...+...|++++|...+++. .. .++ ..++..+...+...|++++|...+++++++.+
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 5666777777777777777777665 10 111 33566666778888888888888888877665
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.28 E-value=3.3e-10 Score=112.67 Aligned_cols=226 Identities=10% Similarity=0.044 Sum_probs=160.3
Q ss_pred HHHHhCC-chHHHHHHHHhHHC----CCCC-CHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCC------CCchhHHHHH
Q 007288 288 AGYEKSG-SSECLNMFSKMKSE----RFSP-NCFTFTSIIAACATLAALSCGQQVHAGIVRRGL------DGNLALANAL 355 (609)
Q Consensus 288 ~~~~~~~-~~~a~~~~~~m~~~----~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~l 355 (609)
..+...| +++|...|++.... +-.+ ...++..+...+...|+++.|...+.+..+.-. +....+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3344555 66666666655442 1111 224566666777777777777777776654311 1123467778
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC-----CC----cchHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHH
Q 007288 356 IDMYAKCGNISDSQKIFSEMSD-----RD----LVTWTSMMIGYGAHGHGKEAIELFDEMVKS----GVRP-DRIVFMAV 421 (609)
Q Consensus 356 ~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~l 421 (609)
..+|...|++++|...|++..+ ++ ..++..+..+|...|++++|+..+++..+. +..| ...++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 8888888998888888877662 11 137888899999999999999999998872 3323 34588889
Q ss_pred HHHHhccCCHHHHHHHHHHhhhc----CCCCChhHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCCH-hhHHHHHHHHH
Q 007288 422 LTACSHAGLVDEGLKYFKSMNDY----NVNPNKEIYGCVVDLLGRAGR---VKEAYELIKSMPFKPDE-SVWGPLLGACK 493 (609)
Q Consensus 422 l~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~l~~~~~ 493 (609)
...+.+.|++++|...+++..+. +-+.....+..+...+...|+ +++|+.++++.+..|+. ..+..+...|.
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYH 350 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999987442 212223346678888999999 99999999998655543 45667778999
Q ss_pred hCCChHHHHHHHHHHhccCC
Q 007288 494 EHRLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 494 ~~~~~~~a~~~~~~~~~~~p 513 (609)
..|++++|...+++++++..
T Consensus 351 ~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 351 ERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999987543
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.27 E-value=1.8e-10 Score=101.22 Aligned_cols=160 Identities=16% Similarity=0.047 Sum_probs=100.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc
Q 007288 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463 (609)
Q Consensus 384 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 463 (609)
..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHh
Confidence 334444444455555555554444321 1233445555555555555555555555554332 22445555566666666
Q ss_pred CCHHHHHHHHHhC-CC-CCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 007288 464 GRVKEAYELIKSM-PF-KPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKI 541 (609)
Q Consensus 464 g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (609)
|++++|.+.++++ .. ..+...+..+..++...|++++|...++++++..|.+...+..++.+|...|++++|...+++
T Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666666655 11 224556667777788888888888888888888888888888888888888888888888888
Q ss_pred HHhC
Q 007288 542 MRGM 545 (609)
Q Consensus 542 m~~~ 545 (609)
..+.
T Consensus 170 ~~~~ 173 (186)
T 3as5_A 170 ANEL 173 (186)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 8764
No 72
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.27 E-value=1.2e-08 Score=107.19 Aligned_cols=433 Identities=9% Similarity=-0.024 Sum_probs=275.0
Q ss_pred ChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCC---HHHHH
Q 007288 92 CHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS---MDNAR 168 (609)
Q Consensus 92 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~---~~~A~ 168 (609)
...+.+..|++.+..+. -|..+|..++..+.+.+.++.+..+++.++..- +.....|...+..-.+.+ + ++.+.
T Consensus 47 ~~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~-~~~~~~~v~ 123 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKM-EELDAAVIE 123 (679)
T ss_dssp CCSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC---CCCHHHHH
T ss_pred CCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhC-CcchHHHHH
Confidence 34555555666655443 488899999999988899999999999998874 346678888888888877 7 99999
Q ss_pred HHHccCCC-----CChhhHHHHHHHHHhcCCh----hh----HHHHHHHHHH-CCC-CCCH-hhHHHHHHHHHc------
Q 007288 169 LVFNDMKW-----KNDVSWTTLITGYAHSGNG----YG----GLGVFKEMLL-EGV-EMNP-YSFSIAVRACAS------ 226 (609)
Q Consensus 169 ~~~~~~~~-----~~~~~~~~li~~~~~~g~~----~~----a~~~~~~m~~-~g~-~p~~-~t~~~ll~~~~~------ 226 (609)
.+|++... +++..|...+....+.++. ++ ..++|+.... .|. .|+. ..|...+.....
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 99987643 6777788777766665554 22 3466666544 365 5543 445544443322
Q ss_pred ---cCCchhHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCchHHHHH
Q 007288 227 ---TGWVSFGKLIHAAVIKHGFGSN--LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNM 301 (609)
Q Consensus 227 ---~g~~~~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~ 301 (609)
.++++.+..+|+.++. ++.. ..+|......-...+. ..+.+++.+. -.. ++.|...
T Consensus 204 ~eeq~~~~~~R~iy~raL~--iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~-----------~~~-----y~~Ar~~ 264 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLC--QPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL-----------SAQ-----YMNARSL 264 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTT--SCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH-----------HHH-----HHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh-----------hHH-----HHHHHHH
Confidence 2345566777777663 2221 1222221111100000 0011111110 000 2333344
Q ss_pred HHHhHH--CCC----C-----------C-----CH---HhHHHHHHHHHhhc-------cHHHHHHHHHHHHHhCCCCch
Q 007288 302 FSKMKS--ERF----S-----------P-----NC---FTFTSIIAACATLA-------ALSCGQQVHAGIVRRGLDGNL 349 (609)
Q Consensus 302 ~~~m~~--~~~----~-----------p-----~~---~t~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~ 349 (609)
+.++.. .++ + | +. ..|...+.---..+ ..+.+..+|++.... ++.+.
T Consensus 265 ~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~ 343 (679)
T 4e6h_A 265 YQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAP 343 (679)
T ss_dssp HHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCH
T ss_pred HHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCH
Confidence 433221 111 0 1 00 12222222211111 134456678877765 35577
Q ss_pred hHHHHHHHHHHhcCCHHHHH-HHHHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------CCC--
Q 007288 350 ALANALIDMYAKCGNISDSQ-KIFSEMSD--R-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV---------RPD-- 414 (609)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~A~-~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------~p~-- 414 (609)
.+|...+..+...|+.++|. .+|++... | +...|-..+...-+.|++++|.++|+++.+... .|+
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~ 423 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE 423 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch
Confidence 78888888888899999996 99988773 3 445677788888899999999999999986410 142
Q ss_pred ----------HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc-CCHHHHHHHHHhC--CCCCC
Q 007288 415 ----------RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA-GRVKEAYELIKSM--PFKPD 481 (609)
Q Consensus 415 ----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~--~~~p~ 481 (609)
...|...+....+.|+.+.|..+|..+.+.-.......|-..+..-.+. ++.+.|..+|+.. ...-+
T Consensus 424 ~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~ 503 (679)
T 4e6h_A 424 SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC
T ss_pred hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc
Confidence 2367777888888899999999999996641122344444333333344 4589999999887 22235
Q ss_pred HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 482 ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN---MMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 482 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
...|...+......|+.+.|..+|++++...|+ ....|...+..-.+.|+.+.+..+.+++.+.-+
T Consensus 504 ~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 504 GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 566778888888899999999999999998773 456777888888889999999999999986544
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.26 E-value=2.1e-10 Score=113.93 Aligned_cols=222 Identities=9% Similarity=0.013 Sum_probs=153.1
Q ss_pred HHHHhhccHHHHHHHHHHHHHhC--CC---CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC-----cchHHHH
Q 007288 322 AACATLAALSCGQQVHAGIVRRG--LD---GNLALANALIDMYAKCGNISDSQKIFSEMSD-----RD-----LVTWTSM 386 (609)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~l 386 (609)
..+...|+++.|...+.++.+.. .. ....++..+..+|...|+++.|...+++..+ ++ ..+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 34456777777777777766431 11 1234666777788888888887777766542 11 3467778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhc----CCCCChhHHHHHH
Q 007288 387 MIGYGAHGHGKEAIELFDEMVKS----GVRP-DRIVFMAVLTACSHAGLVDEGLKYFKSMNDY----NVNPNKEIYGCVV 457 (609)
Q Consensus 387 i~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 457 (609)
..+|...|++++|.+.+++..+. +-.+ ...++..+...|...|++++|...+++..+. +.+....++..+.
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 88888889999998888887652 1111 1236777888888999999999988888541 2223366778888
Q ss_pred HHHhhcCCHHHHHHHHHhC----CC--CCC-HhhHHHHHHHHHhCCC---hHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007288 458 DLLGRAGRVKEAYELIKSM----PF--KPD-ESVWGPLLGACKEHRL---PNLGKLAALRVLDLKPNMMGTYIILSNIYA 527 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 527 (609)
..+.+.|++++|...+++. .. .|. ...+..+...+...++ +++|...+++. ...|.....+..++..|.
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHH
Confidence 8999999999999888876 11 222 2234444466777777 77777777762 223334557778999999
Q ss_pred hcCChHHHHHHHHHHHh
Q 007288 528 AEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 528 ~~g~~~~A~~~~~~m~~ 544 (609)
..|++++|...+++..+
T Consensus 348 ~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 99999999999988864
No 74
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.25 E-value=1.5e-09 Score=104.16 Aligned_cols=183 Identities=11% Similarity=0.035 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-cc-hHHHHHHHHHhcCCHHHHHHHHHHH
Q 007288 331 SCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--RD-LV-TWTSMMIGYGAHGHGKEAIELFDEM 406 (609)
Q Consensus 331 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~-~~~~li~~~~~~g~~~~A~~~~~~m 406 (609)
++|..+|++..+.-.+.+...+..++..+.+.|++++|..+|+++.+ |+ .. .|..++..+.+.|++++|..+|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 66666666666521133444566666666666666666666666553 22 22 5666666666666677777777666
Q ss_pred HHCCCCCCHHHHHHHHHHH-hccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C---CCC-
Q 007288 407 VKSGVRPDRIVFMAVLTAC-SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-P---FKP- 480 (609)
Q Consensus 407 ~~~g~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p- 480 (609)
.+.+ +++...|....... ...|++++|..+|+...+.. +-+...|..++..+.+.|++++|..+|++. . ..|
T Consensus 161 ~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~ 238 (308)
T 2ond_A 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH
Confidence 6542 12223333222221 12466677777776664432 224556666666666666666666666665 1 233
Q ss_pred -CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC
Q 007288 481 -DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM 515 (609)
Q Consensus 481 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 515 (609)
....|..++....+.|+.+.|..+++++.+..|++
T Consensus 239 ~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 239 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 24456666666666666666666666666666643
No 75
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.25 E-value=8.7e-10 Score=105.91 Aligned_cols=213 Identities=8% Similarity=0.008 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHH-------hcCCH-------HHHHHHHHhcCC---C-CcchHHHHHHHHHh
Q 007288 331 SCGQQVHAGIVRRGLDGNLALANALIDMYA-------KCGNI-------SDSQKIFSEMSD---R-DLVTWTSMMIGYGA 392 (609)
Q Consensus 331 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 392 (609)
+.|..+|+++.... +.+...|..++..+. +.|++ ++|..+|++..+ | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666666543 445566666666654 35775 899999998764 3 44689999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH-H-HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHh-hcCCHHHH
Q 007288 393 HGHGKEAIELFDEMVKSGVRPDR-I-VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG-RAGRVKEA 469 (609)
Q Consensus 393 ~g~~~~A~~~~~~m~~~g~~p~~-~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A 469 (609)
.|++++|..+|+++.+. .|+. . .|..+...+.+.|++++|..+|++..+.+. .+...|........ ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999984 5543 3 789999999999999999999999977542 34555554443322 36999999
Q ss_pred HHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhcc---CC-CCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 007288 470 YELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDL---KP-NMMGTYIILSNIYAAEGKWEEFAKFRKIMR 543 (609)
Q Consensus 470 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 543 (609)
..+|++. ...| +...|..++..+.+.|++++|..+++++++. .| .....|..++..+.+.|++++|..+++++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999987 2223 5778889999999999999999999999985 45 356688899999999999999999999998
Q ss_pred hCCC
Q 007288 544 GMGS 547 (609)
Q Consensus 544 ~~~~ 547 (609)
+..+
T Consensus 269 ~~~p 272 (308)
T 2ond_A 269 TAFR 272 (308)
T ss_dssp HHTT
T ss_pred HHcc
Confidence 7544
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.21 E-value=3.1e-10 Score=103.75 Aligned_cols=190 Identities=14% Similarity=0.009 Sum_probs=100.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 007288 348 NLALANALIDMYAKCGNISDSQKIFSEMSD----RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR-IVFMAVL 422 (609)
Q Consensus 348 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll 422 (609)
|+..+......+...|++++|...|+...+ ++...+..+..++...|++++|+..+++..+. .|+. ..+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 345555556666666666666666665542 34444555556666666666666666666653 3332 3555555
Q ss_pred HHHhccCCHHHHHHHHHHhhhcCCCCCh-------hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HhhHHHHHHH
Q 007288 423 TACSHAGLVDEGLKYFKSMNDYNVNPNK-------EIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD---ESVWGPLLGA 491 (609)
Q Consensus 423 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~ 491 (609)
..+...|++++|+..+++..+... .+. ..|..+...+...|++++|++.+++. ...|+ ...|..+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 666666666666666666644331 122 33445555555556666666655554 33443 2333333344
Q ss_pred HHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 492 CKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 492 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
+.. .+...++++..+.+.+...|... .....+.+++|+..+++..+..+
T Consensus 163 ~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 163 FYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCC
Confidence 432 23333444445444333333222 22334455999999999987443
No 77
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.21 E-value=3.4e-11 Score=115.78 Aligned_cols=243 Identities=9% Similarity=0.036 Sum_probs=140.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCchHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhc
Q 007288 249 LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLA 328 (609)
Q Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 328 (609)
..++..+...+...|++++|...|+++.+ ++..............+..+...+...|
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-----------------------~~~~~~~~~~~~~~~~~~~la~~~~~~g 83 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALE-----------------------DLEKTSGHDHPDVATMLNILALVYRDQN 83 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------HHHHHHCSSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------------HHHHHcCCCCHHHHHHHHHHHHHHHHCC
Confidence 44556666666666666666666655432 1111110011122334555555666666
Q ss_pred cHHHHHHHHHHHHHh------C-CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----CcchHHHHHHHH
Q 007288 329 ALSCGQQVHAGIVRR------G-LDGNLALANALIDMYAKCGNISDSQKIFSEMSD-------R----DLVTWTSMMIGY 390 (609)
Q Consensus 329 ~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~ 390 (609)
++++|...+..+.+. + .+....++..+...|...|++++|...|+++.+ + ....+..+...+
T Consensus 84 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~ 163 (311)
T 3nf1_A 84 KYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLC 163 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 666666666655543 1 122345566677777777777777777766542 1 224567777888
Q ss_pred HhcCCHHHHHHHHHHHHHC------CCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhc-------CCCCC-------
Q 007288 391 GAHGHGKEAIELFDEMVKS------GVRPDR-IVFMAVLTACSHAGLVDEGLKYFKSMNDY-------NVNPN------- 449 (609)
Q Consensus 391 ~~~g~~~~A~~~~~~m~~~------g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~------- 449 (609)
...|++++|++.++++.+. +-.|+. .++..+...+...|++++|...++++.+. ...+.
T Consensus 164 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 243 (311)
T 3nf1_A 164 QNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMH 243 (311)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH
Confidence 8888888888888888763 223332 36777888888999999999988888542 11111
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC
Q 007288 450 KEIYGCVVDLLGRAGRVKEAYELIKSMP-FKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
...+..+...+...+.+.+|...++... ..| +..++..+..+|.+.|++++|...+++++++.|.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 244 AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1122223333444455555566666652 233 4567778889999999999999999999988773
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.20 E-value=9.1e-10 Score=100.61 Aligned_cols=204 Identities=10% Similarity=0.058 Sum_probs=159.6
Q ss_pred CCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcchHHHHHH
Q 007288 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--R-DLVTWTSMMI 388 (609)
Q Consensus 312 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~ 388 (609)
.|+..+......+...|++++|...|....+...+++...+..+..++.+.|++++|...|+...+ | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456788888889999999999999999999987547777777799999999999999999998874 3 4567888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC---hhHHHHHH
Q 007288 389 GYGAHGHGKEAIELFDEMVKSGVRPD-R-------IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN---KEIYGCVV 457 (609)
Q Consensus 389 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 457 (609)
+|...|++++|+..+++..+. .|+ . ..|..+...+...|++++|+..|++..+.+ |+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHH
Confidence 999999999999999999985 343 3 457788888999999999999999997643 44 56777788
Q ss_pred HHHhhcCCHHHHHHHHHhC-C-CCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007288 458 DLLGRAGRVKEAYELIKSM-P-FKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 526 (609)
.+|...|+. .++++ . ...+...+.... ....+.+++|+..+++++++.|++..+...+..+.
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 888766543 22222 1 112334444333 34456789999999999999998887777766554
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.19 E-value=1.2e-08 Score=100.79 Aligned_cols=255 Identities=8% Similarity=-0.042 Sum_probs=165.4
Q ss_pred HHhCC-chHHHHHHHHhHHCCCCCCHH----hHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-Cc----hhHHHHHHHHH
Q 007288 290 YEKSG-SSECLNMFSKMKSERFSPNCF----TFTSIIAACATLAALSCGQQVHAGIVRRGLD-GN----LALANALIDMY 359 (609)
Q Consensus 290 ~~~~~-~~~a~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~ 359 (609)
+...| .++|...+++........+.. .+..+...+...|+++.|...+.+....... .+ ..++..+...+
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 103 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 103 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 33444 555555555554432111221 3444455566677777777777766542110 11 22345667777
Q ss_pred HhcCCHHHHHHHHHhcCC-------C----CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C--CHHHHHHHHHH
Q 007288 360 AKCGNISDSQKIFSEMSD-------R----DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR--P--DRIVFMAVLTA 424 (609)
Q Consensus 360 ~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~~~~~ll~~ 424 (609)
...|++++|...+++..+ + ....+..+...+...|++++|...+++....... + ...++..+...
T Consensus 104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 888888888888776652 1 1234566777888889999999999888763211 1 23467778888
Q ss_pred HhccCCHHHHHHHHHHhhhcCCCCCh-hHHH-----HHHHHHhhcCCHHHHHHHHHhC-CCCCC-----HhhHHHHHHHH
Q 007288 425 CSHAGLVDEGLKYFKSMNDYNVNPNK-EIYG-----CVVDLLGRAGRVKEAYELIKSM-PFKPD-----ESVWGPLLGAC 492 (609)
Q Consensus 425 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~ 492 (609)
+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++. ...|. ...+..+..++
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 263 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 263 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence 88999999999999888443211111 1121 2334477899999999999887 22221 22455666888
Q ss_pred HhCCChHHHHHHHHHHhccCCC-----C-cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 493 KEHRLPNLGKLAALRVLDLKPN-----M-MGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 493 ~~~~~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
...|++++|...++++....+. + ...+..++.++...|++++|...+++...
T Consensus 264 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 264 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8999999999999988765331 1 23667788999999999999999988865
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.18 E-value=1.5e-09 Score=95.07 Aligned_cols=166 Identities=14% Similarity=0.073 Sum_probs=140.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 007288 350 ALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS 426 (609)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 426 (609)
..+..+...+...|++++|...|+.+.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4556677888899999999999999875 356678888899999999999999999998853 346678888899999
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHH
Q 007288 427 HAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLA 504 (609)
Q Consensus 427 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 504 (609)
..|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|...
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999996654 346788888999999999999999999887 2233 567888888999999999999999
Q ss_pred HHHHhccCCCCcc
Q 007288 505 ALRVLDLKPNMMG 517 (609)
Q Consensus 505 ~~~~~~~~p~~~~ 517 (609)
++++++..|++..
T Consensus 167 ~~~~~~~~~~~~~ 179 (186)
T 3as5_A 167 FKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHCCCG
T ss_pred HHHHHHcCCCchh
Confidence 9999998886554
No 81
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.15 E-value=4e-10 Score=115.16 Aligned_cols=180 Identities=12% Similarity=-0.003 Sum_probs=155.9
Q ss_pred HHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 007288 365 ISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHG-KEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS 440 (609)
Q Consensus 365 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 440 (609)
++++...++.... .+...+..+..++...|++ ++|++.|++..+.. +-+...+..+...|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5566666665543 3567888899999999999 99999999999853 23467999999999999999999999999
Q ss_pred hhhcCCCCChhHHHHHHHHHhhc---------CCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhC--------CChHHH
Q 007288 441 MNDYNVNPNKEIYGCVVDLLGRA---------GRVKEAYELIKSM-PFKP-DESVWGPLLGACKEH--------RLPNLG 501 (609)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------~~~~~a 501 (609)
..+.. |+...+..+...|... |++++|++.+++. ...| +...|..+..++... |++++|
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 97754 6678899999999999 9999999999987 3444 577888888999888 999999
Q ss_pred HHHHHHHhccCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 502 KLAALRVLDLKP---NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 502 ~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
+..++++++++| .++..|..++.+|...|++++|.+.|++..+..+
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999 9999999999999999999999999999987544
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.12 E-value=1.6e-08 Score=100.29 Aligned_cols=222 Identities=8% Similarity=0.030 Sum_probs=158.1
Q ss_pred HHHhCC-chHHHHHHHHhHHCCC-CCC----HHhHHHHHHHHHhhccHHHHHHHHHHHHHhCC-----C-CchhHHHHHH
Q 007288 289 GYEKSG-SSECLNMFSKMKSERF-SPN----CFTFTSIIAACATLAALSCGQQVHAGIVRRGL-----D-GNLALANALI 356 (609)
Q Consensus 289 ~~~~~~-~~~a~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~~l~ 356 (609)
.+...| +++|+..|++...... .++ ..++..+...+...|+++.|...+.+..+... . ....+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 344555 6666666666554210 122 33566667777778888888887777654211 1 1245667788
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-----CC----cchHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 007288 357 DMYAKCGNISDSQKIFSEMSD-----RD----LVTWTSMMIGYGAHGHGKEAIELFDEMVK-----SGVRPDRIVFMAVL 422 (609)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ll 422 (609)
.+|...|++++|...|++..+ ++ ..+++.+..+|...|++++|++.+++..+ .. +....++..+.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la 268 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLS 268 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHH
Confidence 888888888888888877653 12 24677888899999999999999999886 32 22356888899
Q ss_pred HHHhccCCHHHHHHHHHHhhhcCC----CCChhHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCCH-hhHHHHHHHHHh
Q 007288 423 TACSHAGLVDEGLKYFKSMNDYNV----NPNKEIYGCVVDLLGRAGR---VKEAYELIKSMPFKPDE-SVWGPLLGACKE 494 (609)
Q Consensus 423 ~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~l~~~~~~ 494 (609)
..+.+.|++++|...+++..+... +.....+..+...+...|+ +.+|+..+++.+..|+. ..+..+...|..
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Confidence 999999999999999999854321 2223456667777778888 89999999987654443 355567788999
Q ss_pred CCChHHHHHHHHHHhcc
Q 007288 495 HRLPNLGKLAALRVLDL 511 (609)
Q Consensus 495 ~~~~~~a~~~~~~~~~~ 511 (609)
.|++++|...++++++.
T Consensus 349 ~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999988764
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.12 E-value=6e-10 Score=105.27 Aligned_cols=196 Identities=15% Similarity=0.178 Sum_probs=113.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----CcchHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC
Q 007288 349 LALANALIDMYAKCGNISDSQKIFSEMSD-------R----DLVTWTSMMIGYGAHGHGKEAIELFDEMVKS------GV 411 (609)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 411 (609)
..++..+...|...|++++|...|+++.+ + ...++..+...|...|++++|...+++..+. .-
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 34445555555555555555555554431 1 1235566666666777777777777666543 11
Q ss_pred CCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhc------C-CCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-------
Q 007288 412 RPD-RIVFMAVLTACSHAGLVDEGLKYFKSMNDY------N-VNPNKEIYGCVVDLLGRAGRVKEAYELIKSM------- 476 (609)
Q Consensus 412 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------- 476 (609)
.|+ ..++..+...+...|++++|..+++++.+. + .+....++..+...|...|++++|.+.++++
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 122 346677777777778888888777777443 1 1123456677777788888888887777665
Q ss_pred ---CCCCCH-hhHHHHHHHHHhCCC------hHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 477 ---PFKPDE-SVWGPLLGACKEHRL------PNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 477 ---~~~p~~-~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
...+.. ..|..+.......+. +..+...++......|....++..++.+|...|++++|..++++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 112222 233333333333222 22333333333334455567888899999999999999999988765
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.11 E-value=9.6e-10 Score=104.64 Aligned_cols=201 Identities=8% Similarity=0.038 Sum_probs=141.8
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C--CcchHHHHHHHHHhcCCHHHH
Q 007288 329 ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD-------R--DLVTWTSMMIGYGAHGHGKEA 399 (609)
Q Consensus 329 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A 399 (609)
+++.|...+... ...|...|++++|...|++..+ + ...+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 467776666655 3456677888888777776542 1 135788888888899999999
Q ss_pred HHHHHHHHHC----CCCC-CHHHHHHHHHHHhcc-CCHHHHHHHHHHhhhcCCCC-C----hhHHHHHHHHHhhcCCHHH
Q 007288 400 IELFDEMVKS----GVRP-DRIVFMAVLTACSHA-GLVDEGLKYFKSMNDYNVNP-N----KEIYGCVVDLLGRAGRVKE 468 (609)
Q Consensus 400 ~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~ 468 (609)
+..+++..+. |-.. -..++..+...|... |++++|+..|++..+..... + ..++..+...+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9988887752 2111 134788888899996 99999999999985432111 1 3568889999999999999
Q ss_pred HHHHHHhC-CCCCCHh--------hHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcch-----HHHHHHHHH--hcCCh
Q 007288 469 AYELIKSM-PFKPDES--------VWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT-----YIILSNIYA--AEGKW 532 (609)
Q Consensus 469 A~~~~~~~-~~~p~~~--------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 532 (609)
|+..|++. ...|+.. .|..+..++...|++++|...++++++++|..... +..++.+|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999887 2233211 46677788999999999999999999999965442 444666665 45778
Q ss_pred HHHHHHHHHHHh
Q 007288 533 EEFAKFRKIMRG 544 (609)
Q Consensus 533 ~~A~~~~~~m~~ 544 (609)
++|+..|+++..
T Consensus 257 ~~A~~~~~~~~~ 268 (292)
T 1qqe_A 257 SEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHTTSSC
T ss_pred HHHHHHhccCCc
Confidence 888888866544
No 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.10 E-value=7.5e-08 Score=95.12 Aligned_cols=157 Identities=10% Similarity=-0.091 Sum_probs=78.2
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCHh----hHHHHHHHHHccCCchhHHHHHHHHHHhCCC-CC----hhHHHHHH
Q 007288 186 ITGYAHSGNGYGGLGVFKEMLLEGVEMNPY----SFSIAVRACASTGWVSFGKLIHAAVIKHGFG-SN----LPVMNSIL 256 (609)
Q Consensus 186 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~~----~~~~~~l~ 256 (609)
...+...|++++|...+++........+.. .+..+...+...|+++.|...+++..+..-. .+ ..++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344556677777777777766543222221 3444445566677777777777666553211 11 12245556
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-------C----ChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCC--C--CHHhHHHH
Q 007288 257 DMYCRFDCLSDANQYFDEMTE-------K----DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFS--P--NCFTFTSI 320 (609)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~--p--~~~t~~~l 320 (609)
..+...|++++|...+++..+ + ....+..+...+...| +++|...+++....... + ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 666667777776666655421 0 0112333344444444 55555555444332110 1 12234444
Q ss_pred HHHHHhhccHHHHHHHHHHHHH
Q 007288 321 IAACATLAALSCGQQVHAGIVR 342 (609)
Q Consensus 321 l~~~~~~~~~~~a~~~~~~~~~ 342 (609)
...+...|++++|...++....
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~ 202 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLEN 202 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555555555555555443
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.06 E-value=4.3e-09 Score=100.08 Aligned_cols=198 Identities=8% Similarity=-0.055 Sum_probs=129.2
Q ss_pred HHHhhccHHHHHHHHHHHHHh----CCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----cchHHHHHH
Q 007288 323 ACATLAALSCGQQVHAGIVRR----GLDGN-LALANALIDMYAKCGNISDSQKIFSEMSD-----RD----LVTWTSMMI 388 (609)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~ 388 (609)
.+...|++++|...|.+..+. |-+++ ..+++.+..+|.+.|++++|...|++..+ .+ ..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555544432 21111 34556666666666777766666665542 11 246777888
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCh------hHHHHH
Q 007288 389 GYGAH-GHGKEAIELFDEMVKSGVR-PD----RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK------EIYGCV 456 (609)
Q Consensus 389 ~~~~~-g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l 456 (609)
.|... |++++|+..|++..+.... .+ ..++..+...+...|++++|+..|++..+....... ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88886 9999999999988763110 01 346888889999999999999999998765433222 156778
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCCHh------hHHHHHHHHH--hCCChHHHHHHHHHHhccCCCCcchHH
Q 007288 457 VDLLGRAGRVKEAYELIKSM-PFKPDES------VWGPLLGACK--EHRLPNLGKLAALRVLDLKPNMMGTYI 520 (609)
Q Consensus 457 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~------~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~~~~~ 520 (609)
..++...|++++|+..+++. .+.|+.. .+..++.++. ..+++++|+..++++..++|.....+.
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~ 278 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILN 278 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 88899999999999999887 4455422 2344555554 456788999999888888885443333
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.05 E-value=1.2e-08 Score=95.24 Aligned_cols=205 Identities=8% Similarity=0.002 Sum_probs=125.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC-HHHHH
Q 007288 348 NLALANALIDMYAKCGNISDSQKIFSEMSD--RD----LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV-RPD-RIVFM 419 (609)
Q Consensus 348 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~~~~ 419 (609)
+...+-.+...+.+.|++++|...|+.+.+ |+ ...+..+..+|...|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344455556666666666666666666653 22 33455566666666666666666666665311 112 23455
Q ss_pred HHHHHHhc--------cCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 007288 420 AVLTACSH--------AGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491 (609)
Q Consensus 420 ~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 491 (609)
.+..++.. .|++++|+..|+++.+.... +......+.......++. ...+..+...
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~---------------~~~~~~la~~ 157 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKL---------------ARKQYEAARL 157 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHH---------------HHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHH---------------HHHHHHHHHH
Confidence 55555555 66666666666666443311 112221111111000000 0113556788
Q ss_pred HHhCCChHHHHHHHHHHhccCCCC---cchHHHHHHHHHhc----------CChHHHHHHHHHHHhCCCcccCceeEEEe
Q 007288 492 CKEHRLPNLGKLAALRVLDLKPNM---MGTYIILSNIYAAE----------GKWEEFAKFRKIMRGMGSKKEVGMSWIEV 558 (609)
Q Consensus 492 ~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 558 (609)
+.+.|++++|+..++++++..|++ ...+..++.+|... |++++|...++++.+..+
T Consensus 158 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p----------- 226 (261)
T 3qky_A 158 YERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP----------- 226 (261)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT-----------
T ss_pred HHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC-----------
Confidence 999999999999999999999974 44788899999877 999999999999987433
Q ss_pred CCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHH
Q 007288 559 RDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNE 591 (609)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~ 591 (609)
.++.+.++...+..+...+.+
T Consensus 227 ------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 ------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred ------------CChHHHHHHHHHHHHHHHHHH
Confidence 345566666667777666654
No 88
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.05 E-value=1.6e-09 Score=115.22 Aligned_cols=163 Identities=12% Similarity=0.127 Sum_probs=124.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 007288 348 NLALANALIDMYAKCGNISDSQKIFSEMSD--R-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD-RIVFMAVLT 423 (609)
Q Consensus 348 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~ 423 (609)
+...++.|..+|.+.|++++|+..|++..+ | +..+|+.+..+|.+.|++++|++.|++.++. .|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 355667777777777888888777777653 3 4567788888888888888888888888874 444 557888888
Q ss_pred HHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHH
Q 007288 424 ACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLG 501 (609)
Q Consensus 424 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 501 (609)
++...|++++|++.|++..+.+. -+...|..+..+|...|++++|++.|++. .+.| +...+..+..++...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 88888888888888888866542 25677888888888888888888888876 4455 456777888888888888888
Q ss_pred HHHHHHHhccCC
Q 007288 502 KLAALRVLDLKP 513 (609)
Q Consensus 502 ~~~~~~~~~~~p 513 (609)
.+.+++++++.|
T Consensus 165 ~~~~~kal~l~~ 176 (723)
T 4gyw_A 165 DERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCh
Confidence 888888776543
No 89
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.00 E-value=2.3e-08 Score=90.93 Aligned_cols=180 Identities=12% Similarity=0.021 Sum_probs=109.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCc----chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHH
Q 007288 350 ALANALIDMYAKCGNISDSQKIFSEMSD--RDL----VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR----IVFM 419 (609)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~ 419 (609)
..+..+...+.+.|++++|...|+.+.+ |+. ..+..+..+|.+.|++++|+..|+++.+. .|+. ..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3444556667777777777777777653 321 35566667777777777777777777763 2222 1333
Q ss_pred HHHHHHhc------------------cCCHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 007288 420 AVLTACSH------------------AGLVDEGLKYFKSMNDYNVNPN-KEIYGCVVDLLGRAGRVKEAYELIKSMPFKP 480 (609)
Q Consensus 420 ~ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 480 (609)
.+..++.. .|++++|+..|+++.+.. |+ ...+...... +......
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----~~~~~~~---------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----VFLKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----HHHHHHH----------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----HHHHHHH----------
Confidence 33333332 234445555554443322 11 1111111000 0000000
Q ss_pred CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 007288 481 DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMM---GTYIILSNIYAAEGKWEEFAKFRKIMRGMGSK 548 (609)
Q Consensus 481 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 548 (609)
......+...+.+.|++++|+..++++++..|+++ ..+..++.+|.+.|++++|...++.+...++.
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00112345678899999999999999999999765 56889999999999999999999999887654
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.99 E-value=1.1e-08 Score=84.07 Aligned_cols=126 Identities=17% Similarity=0.228 Sum_probs=76.1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHhhHHHHHHHHHhCC
Q 007288 419 MAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PF-KPDESVWGPLLGACKEHR 496 (609)
Q Consensus 419 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~ 496 (609)
..+...+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|...++++ .. ..+...+..+...+...|
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 334444444555555555555543322 123444444555555555555555555544 11 123445566666677777
Q ss_pred ChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 497 LPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 497 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
++++|...++++.+..|.+...+..++.+|...|++++|...++++.+.
T Consensus 84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777777777777777777888888888888888887777653
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.96 E-value=1e-09 Score=92.66 Aligned_cols=142 Identities=12% Similarity=0.036 Sum_probs=103.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCC
Q 007288 387 MIGYGAHGHGKEAIELFDEMVKSGVRPDR-IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465 (609)
Q Consensus 387 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 465 (609)
...+...|++++|+..++..... .|+. ..+..+...|.+.|++++|++.|++..+.. +-+...|..+..+|.+.|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 34445567777777777776542 3333 255567777888888888888888886654 2367778888888888888
Q ss_pred HHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHH-HHHHHhccCCCCcchHHHHHHHHHhcCC
Q 007288 466 VKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKL-AALRVLDLKPNMMGTYIILSNIYAAEGK 531 (609)
Q Consensus 466 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 531 (609)
+++|+..|++. .+.| +...|..+...+.+.|++++|.. .++++++++|+++.+|.....++...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888888776 4455 45677788888888888876555 4688999999999999988888888775
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.96 E-value=5.7e-08 Score=90.56 Aligned_cols=174 Identities=7% Similarity=-0.023 Sum_probs=96.2
Q ss_pred HHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 007288 368 SQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP-DRIVFMAVLTACSHAGLVDEGLKYFKSMND 443 (609)
Q Consensus 368 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 443 (609)
|...|+++.+ ++..++..+..++...|++++|++++.+.+..|-.+ +...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444444432 233344455556666666666666666665543212 334555666666666666666666666644
Q ss_pred cCCCC-----ChhHHHHHHHH--HhhcC--CHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhcc--
Q 007288 444 YNVNP-----NKEIYGCVVDL--LGRAG--RVKEAYELIKSM-PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDL-- 511 (609)
Q Consensus 444 ~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 511 (609)
. .| +..+...|..+ ....| ++.+|..+|+++ ...|+..+-..++.++.+.|++++|+..++.+.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 3 23 23333334433 22223 666666666666 22344333344444666677777777777666554
Q ss_pred --------CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 512 --------KPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 512 --------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
+|+++.++..++.+....|+ +|.++++++.+.
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 36666666666666666665 666777777664
No 93
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.94 E-value=7.1e-09 Score=97.74 Aligned_cols=215 Identities=10% Similarity=0.052 Sum_probs=139.3
Q ss_pred HHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHh------CC-CCchhHHHHHHHHHHhcCCHHHHHH
Q 007288 298 CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR------GL-DGNLALANALIDMYAKCGNISDSQK 370 (609)
Q Consensus 298 a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 370 (609)
|++++.+......+....++..+...+...|+++.|...+..+.+. +- +....++..+..+|...|++++|..
T Consensus 27 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 106 (283)
T 3edt_B 27 ALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEP 106 (283)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3444444433222223456677777778888888888888777654 22 2335567778888888888888888
Q ss_pred HHHhcCC-------C----CcchHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCCHH
Q 007288 371 IFSEMSD-------R----DLVTWTSMMIGYGAHGHGKEAIELFDEMVKS------GVRPD-RIVFMAVLTACSHAGLVD 432 (609)
Q Consensus 371 ~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~~~~~ 432 (609)
.|++..+ + ...++..+...|...|++++|...++++.+. +-.|+ ..++..+...+...|+++
T Consensus 107 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 186 (283)
T 3edt_B 107 LCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQ 186 (283)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHH
Confidence 8877652 1 2356778888899999999999999988764 11332 347888889999999999
Q ss_pred HHHHHHHHhhhc-------CCCC-ChhHHHHHHHHHhhc------CCHHHHHHHHHhCC-CCC-CHhhHHHHHHHHHhCC
Q 007288 433 EGLKYFKSMNDY-------NVNP-NKEIYGCVVDLLGRA------GRVKEAYELIKSMP-FKP-DESVWGPLLGACKEHR 496 (609)
Q Consensus 433 ~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~ 496 (609)
+|..++++..+. ...+ ....+..+...+... ..+.++...++..+ ..| ...++..+..++...|
T Consensus 187 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 266 (283)
T 3edt_B 187 DAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQG 266 (283)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Confidence 999999988543 1122 233343333333332 23445555555553 223 3456777889999999
Q ss_pred ChHHHHHHHHHHhccC
Q 007288 497 LPNLGKLAALRVLDLK 512 (609)
Q Consensus 497 ~~~~a~~~~~~~~~~~ 512 (609)
++++|...++++++..
T Consensus 267 ~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 267 KLEAAHTLEDCASRNR 282 (283)
T ss_dssp CHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999988753
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.92 E-value=5.6e-09 Score=111.67 Aligned_cols=146 Identities=11% Similarity=-0.106 Sum_probs=69.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHH
Q 007288 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLL 460 (609)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 460 (609)
..+..+..++...|++++|+..|+++.+.. .-+...+..+..++...|++++|+..|++..+... -+...+..+..+|
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~ 511 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFP-GELAPKLALAATA 511 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHH
Confidence 344444455555555555555555554421 11333444444555555555555555555544331 1344444555555
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 007288 461 GRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529 (609)
Q Consensus 461 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 529 (609)
.+.|++++ ++.|++. ...| +...|..+..++.+.|++++|+..++++++++|++...+..++.+|...
T Consensus 512 ~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~ 581 (681)
T 2pzi_A 512 ELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSG 581 (681)
T ss_dssp HHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC--
T ss_pred HHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHcc
Confidence 55555555 5555444 2222 2334444445555555555555555555555555555555555554443
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.91 E-value=5.2e-08 Score=79.94 Aligned_cols=131 Identities=18% Similarity=0.267 Sum_probs=101.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHh
Q 007288 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461 (609)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 461 (609)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 46667777888888888888888887753 3356677777888888888888888888886654 335667778888888
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC
Q 007288 462 RAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 462 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
..|++++|.+.++++ ...| +...+..+...+...|++++|...++++++..|.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 888888888888876 2223 5667777888888999999999999998888774
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.91 E-value=2e-08 Score=93.74 Aligned_cols=202 Identities=10% Similarity=-0.017 Sum_probs=140.8
Q ss_pred CCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----cchH
Q 007288 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG--NLALANALIDMYAKCGNISDSQKIFSEMSD--RD----LVTW 383 (609)
Q Consensus 312 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~ 383 (609)
.+...+......+...|++++|...|+.+.+..... ....+..+..+|.+.|++++|...|+.+.+ |+ ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 355677778888899999999999999998865221 156778899999999999999999999874 32 2456
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHH
Q 007288 384 TSMMIGYGA--------HGHGKEAIELFDEMVKSGVRPDRI-VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG 454 (609)
Q Consensus 384 ~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 454 (609)
..+..++.. .|++++|+..|+++.+. .|+.. ....+ ..+..+... -...+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH----HHHHHH
Confidence 777888888 99999999999999985 34332 22111 111111000 011245
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCC----HhhHHHHHHHHHhC----------CChHHHHHHHHHHhccCCCCcc--
Q 007288 455 CVVDLLGRAGRVKEAYELIKSM-PFKPD----ESVWGPLLGACKEH----------RLPNLGKLAALRVLDLKPNMMG-- 517 (609)
Q Consensus 455 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~-- 517 (609)
.+...|.+.|++++|+..|+++ ...|+ ...+..+..++... |++++|...++++++..|+++.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 5777888888888888888877 22333 33555666667655 8899999999999999997753
Q ss_pred -hHHHHHHHHHhcCChH
Q 007288 518 -TYIILSNIYAAEGKWE 533 (609)
Q Consensus 518 -~~~~l~~~~~~~g~~~ 533 (609)
....+..++...|+++
T Consensus 233 ~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 233 TAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 3344555554444443
No 97
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.91 E-value=1.1e-07 Score=85.35 Aligned_cols=171 Identities=8% Similarity=-0.093 Sum_probs=133.8
Q ss_pred HHHHHhcC-CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----CHHHHHHHHHHhhh
Q 007288 369 QKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG----LVDEGLKYFKSMND 443 (609)
Q Consensus 369 ~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~ 443 (609)
.+.|+... ..+...+..+...|...+++++|++.|++..+.| +...+..|...|.. + ++++|..+|++..+
T Consensus 6 ~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~ 81 (212)
T 3rjv_A 6 GSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE 81 (212)
T ss_dssp THHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH
Confidence 33444333 2356677777777888888888888888888865 55677777777777 6 89999999998876
Q ss_pred cCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhC-CCCCC---HhhHHHHHHHHHh----CCChHHHHHHHHHHhcc
Q 007288 444 YNVNPNKEIYGCVVDLLGR----AGRVKEAYELIKSM-PFKPD---ESVWGPLLGACKE----HRLPNLGKLAALRVLDL 511 (609)
Q Consensus 444 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 511 (609)
.| +...+..|...|.. .+++++|++.|++. ...|+ ...+..|...|.. .+++++|...++++.+.
T Consensus 82 ~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 82 AG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 55 56677778888877 78999999999887 33342 6788888888888 88999999999999988
Q ss_pred CCCCcchHHHHHHHHHhc-C-----ChHHHHHHHHHHHhCCC
Q 007288 512 KPNMMGTYIILSNIYAAE-G-----KWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 512 ~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 547 (609)
|+++..+..|+.+|... | ++++|..++++..+.|.
T Consensus 159 -~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 159 -SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp -SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred -CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 55778899999999865 3 89999999999988765
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.88 E-value=4.6e-08 Score=92.61 Aligned_cols=174 Identities=9% Similarity=0.005 Sum_probs=135.6
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 007288 366 SDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP-DRIVFMAVLTACSHAGLVDEGLKYFKSMNDY 444 (609)
Q Consensus 366 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 444 (609)
+.....+......+...+..+...+...|++++|...|++..+. .| +...+..+...+...|++++|...++++...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 34444455544444556677778888999999999999999885 44 5568888889999999999999999988654
Q ss_pred CCCCChhHHH-HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC--cchH
Q 007288 445 NVNPNKEIYG-CVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM--MGTY 519 (609)
Q Consensus 445 ~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~ 519 (609)
. |+..... .....+...++.++|++.+++. ...| +...+..+..++...|++++|...++++++.+|++ ...+
T Consensus 181 ~--p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 181 D--QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp G--CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred h--cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 3 4443332 2333466777888888888776 3345 56778888899999999999999999999999977 7889
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q 007288 520 IILSNIYAAEGKWEEFAKFRKIMR 543 (609)
Q Consensus 520 ~~l~~~~~~~g~~~~A~~~~~~m~ 543 (609)
..++.+|...|+.++|...+++..
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHH
Confidence 999999999999999999888764
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.83 E-value=2.6e-08 Score=86.66 Aligned_cols=156 Identities=8% Similarity=0.001 Sum_probs=96.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHH-Hhh
Q 007288 385 SMMIGYGAHGHGKEAIELFDEMVKSGVRP-DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL-LGR 462 (609)
Q Consensus 385 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 462 (609)
.+...+...|++++|...|++..+. .| +...+..+...+...|++++|+..++...+.. |+...+..+... +..
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 3444555556666666666555442 22 33455555566666666666666666654322 122222221111 111
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC--cchHHHHHHHHHhcCChHHHHHH
Q 007288 463 AGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM--MGTYIILSNIYAAEGKWEEFAKF 538 (609)
Q Consensus 463 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~ 538 (609)
.+...+|+..+++. ...| +...+..+..++...|++++|...++++++.+|+. ...+..++.+|...|+.++|...
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 12222355555554 3345 46777788888899999999999999999998854 55888999999999999999998
Q ss_pred HHHHHh
Q 007288 539 RKIMRG 544 (609)
Q Consensus 539 ~~~m~~ 544 (609)
|++...
T Consensus 167 y~~al~ 172 (176)
T 2r5s_A 167 YRRQLY 172 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887653
No 100
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.82 E-value=3.3e-07 Score=85.45 Aligned_cols=239 Identities=8% Similarity=-0.014 Sum_probs=156.6
Q ss_pred HHhcCCHHHHHHHHHhcCCCCh-hHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHH
Q 007288 259 YCRFDCLSDANQYFDEMTEKDL-ITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQV 336 (609)
Q Consensus 259 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 336 (609)
..-.|.+..++.-...+...+. ..-..+.++|...| .... ..-.|....+..+...+ ..+ +...
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~ 88 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEE 88 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHH
Confidence 3445777777665555543222 22223446666666 4321 01223332333332222 222 5666
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007288 337 HAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-----DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411 (609)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 411 (609)
+++....+ .++...+..+..++...|++++|++++...... +...+..++..+.+.|+.+.|.+.+++|.+ .
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~ 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--A 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence 66666554 445555568888899999999999999987433 445677788999999999999999999987 4
Q ss_pred CC-----CHHHHHHHHHHH--hccC--CHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC---
Q 007288 412 RP-----DRIVFMAVLTAC--SHAG--LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PF--- 478 (609)
Q Consensus 412 ~p-----~~~~~~~ll~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--- 478 (609)
.| +..+...|..++ ...| ++.+|..+|+++.+. .|+...-..++.++.+.|++++|.+.++.+ ..
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 66 356666676663 3334 899999999998553 344333344555889999999999999765 21
Q ss_pred -------CC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcch
Q 007288 479 -------KP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518 (609)
Q Consensus 479 -------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 518 (609)
.| +..+...++......|+ .|.++++++.+..|+++..
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 24 44555466666666776 8899999999999976543
No 101
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.81 E-value=9.2e-08 Score=91.58 Aligned_cols=193 Identities=10% Similarity=0.054 Sum_probs=138.2
Q ss_pred hccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----cchHHHHHHHHHhcCCHH
Q 007288 327 LAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD-----RD----LVTWTSMMIGYGAHGHGK 397 (609)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~ 397 (609)
.++++.|...|..+ ...|...|++++|...|....+ .+ ..+|+.+...|...|+++
T Consensus 29 ~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 93 (307)
T 2ifu_A 29 KPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93 (307)
T ss_dssp SCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 35566666655543 4567788898888888877652 11 347888888999999999
Q ss_pred HHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCC-----ChhHHHHHHHHHhhcCCHH
Q 007288 398 EAIELFDEMVKSG---VRPD--RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP-----NKEIYGCVVDLLGRAGRVK 467 (609)
Q Consensus 398 ~A~~~~~~m~~~g---~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~ 467 (609)
+|+..|++..+.- -.+. ..++..+...|.. |++++|+..|++..+..... ...++..+...|.+.|+++
T Consensus 94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH
Confidence 9999999876521 1122 2477888888888 99999999999885432111 1467888999999999999
Q ss_pred HHHHHHHhC-CC---CCC----HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcch-----HHHHHHHHHhcCChHH
Q 007288 468 EAYELIKSM-PF---KPD----ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT-----YIILSNIYAAEGKWEE 534 (609)
Q Consensus 468 ~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~ 534 (609)
+|++.|++. .+ .++ ...+..+..++...|++++|...+++++ +.|..... ...++.++ ..|+.+.
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~ 250 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQ 250 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHH
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHH
Confidence 999999887 11 112 2255666677888899999999999999 98854432 34455555 5677766
Q ss_pred HHH
Q 007288 535 FAK 537 (609)
Q Consensus 535 A~~ 537 (609)
+..
T Consensus 251 ~~~ 253 (307)
T 2ifu_A 251 LLR 253 (307)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.80 E-value=5.7e-08 Score=101.93 Aligned_cols=160 Identities=11% Similarity=0.026 Sum_probs=124.2
Q ss_pred cCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 007288 362 CGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYF 438 (609)
Q Consensus 362 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 438 (609)
.|++++|...|++..+ .+...|..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998874 356788899999999999999999999999853 335678899999999999999999999
Q ss_pred HHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhC---CChHHHHHHHHHHhccCC
Q 007288 439 KSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEH---RLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~p 513 (609)
++..+.. +.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+..++... |++++|...++++++.+|
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 9997755 336788999999999999999999999987 3344 567788888999999 999999999999999999
Q ss_pred CCcchHHHHH
Q 007288 514 NMMGTYIILS 523 (609)
Q Consensus 514 ~~~~~~~~l~ 523 (609)
.+...+..++
T Consensus 160 ~~~~~~~~l~ 169 (568)
T 2vsy_A 160 GAVEPFAFLS 169 (568)
T ss_dssp CCSCHHHHTT
T ss_pred cccChHHHhC
Confidence 8888887776
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.80 E-value=1.1e-07 Score=85.09 Aligned_cols=128 Identities=10% Similarity=0.030 Sum_probs=97.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc
Q 007288 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463 (609)
Q Consensus 384 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 463 (609)
+.+..+|...|++++|+..|++..+.. +-+...+..+...+...|++++|+..|++..+... .+...+..+...|...
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 347888999999999999999999852 23567888899999999999999999999977652 3677888888887666
Q ss_pred CC--HHHHHHHHHhCCCCCCH--hhHHHHHHHHHhCCChHHHHHHHHHHhccCCC
Q 007288 464 GR--VKEAYELIKSMPFKPDE--SVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 464 g~--~~~A~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
|+ .+.+...++... .|+. ..+..+..++...|++++|+..+++++++.|+
T Consensus 136 ~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred hHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 54 445566666653 3443 34444556677789999999999999999995
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.76 E-value=6.7e-09 Score=87.59 Aligned_cols=124 Identities=10% Similarity=-0.023 Sum_probs=101.6
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCCh
Q 007288 421 VLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLP 498 (609)
Q Consensus 421 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 498 (609)
|...+...|++++|+..++...... +-+...+-.+...|.+.|++++|++.|++. ...| +...|..+..++...|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 4455667889999999999885432 113445567889999999999999999988 4555 577888899999999999
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHH-HHHHHhC
Q 007288 499 NLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKF-RKIMRGM 545 (609)
Q Consensus 499 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~ 545 (609)
++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999887765 5777763
No 105
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.76 E-value=3.1e-08 Score=83.10 Aligned_cols=98 Identities=7% Similarity=-0.126 Sum_probs=85.9
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007288 449 NKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 526 (609)
+...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..|+++++++|+++..|..++.+|
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 3556777888888999999999999887 4445 5778888889999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 007288 527 AAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 527 ~~~g~~~~A~~~~~~m~~~~ 546 (609)
...|++++|+..|++..+..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999998754
No 106
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.76 E-value=5.5e-07 Score=85.51 Aligned_cols=159 Identities=10% Similarity=-0.043 Sum_probs=118.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhccCCHHHHHHHHHHhhhcCCC-CC----hhHHHH
Q 007288 386 MMIGYGAHGHGKEAIELFDEMVKSG-VRPDRI----VFMAVLTACSHAGLVDEGLKYFKSMNDYNVN-PN----KEIYGC 455 (609)
Q Consensus 386 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 455 (609)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...+++++|+..++.+.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4567788899999999999888742 122221 3334666677788999999999998663322 22 236888
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-----C--C-CCC-HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC------cchHH
Q 007288 456 VVDLLGRAGRVKEAYELIKSM-----P--F-KPD-ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM------MGTYI 520 (609)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~~-----~--~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 520 (609)
+...|...|++++|+..++++ . . .+. ..++..+..+|.+.|++++|...+++++++.+.. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999998888776 1 1 111 2367778888999999999999999998864422 56889
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHHh
Q 007288 521 ILSNIYAAEGK-WEEFAKFRKIMRG 544 (609)
Q Consensus 521 ~l~~~~~~~g~-~~~A~~~~~~m~~ 544 (609)
.++.+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999988864
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.76 E-value=3.6e-07 Score=95.79 Aligned_cols=147 Identities=10% Similarity=-0.019 Sum_probs=94.1
Q ss_pred hccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHH
Q 007288 327 LAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELF 403 (609)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 403 (609)
.|++++|...+++..+.. +.+...+..+...|.+.|++++|...|++..+ .+...|..+..+|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 367777888887776553 33466777777888888888888888877764 24567777777888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc---CCHHHHHHHHHhC
Q 007288 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA---GRVKEAYELIKSM 476 (609)
Q Consensus 404 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 476 (609)
++..+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+...+... |+.++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 8877742 23456777777888888888888888888765442 3566777777777777 8888888877776
No 108
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.74 E-value=5e-07 Score=96.56 Aligned_cols=188 Identities=13% Similarity=0.070 Sum_probs=146.6
Q ss_pred HhhccHHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhc
Q 007288 325 ATLAALSCGQQVHAGIV--------RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAH 393 (609)
Q Consensus 325 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 393 (609)
...|++++|...++... +. .+.+...+..+..+|...|++++|...|+.+.+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67899999999999887 32 245567788889999999999999999998874 3667889999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 007288 394 GHGKEAIELFDEMVKSGVRP-DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472 (609)
Q Consensus 394 g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 472 (609)
|++++|+..|++..+. .| +...+..+..++.+.|++++ ++.|++..+.+. .+...|..+..++.+.|++++|++.
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999985 44 45688889999999999999 999999977653 3677888999999999999999999
Q ss_pred HHhC-CCCCC-HhhHHHHHHHHHhCCC-----hHHHHHHHHHHhccCCCCcc
Q 007288 473 IKSM-PFKPD-ESVWGPLLGACKEHRL-----PNLGKLAALRVLDLKPNMMG 517 (609)
Q Consensus 473 ~~~~-~~~p~-~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~p~~~~ 517 (609)
|++. ...|+ ...+..+..++...++ .+...+..+....+.+.++.
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 9998 56776 4566666677766555 23344444444455554444
No 109
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.74 E-value=2.6e-06 Score=80.22 Aligned_cols=191 Identities=15% Similarity=0.188 Sum_probs=121.1
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHhcCC---CCcchHHHHHHHH----Hhc---CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007288 352 ANALIDMYAKCG--NISDSQKIFSEMSD---RDLVTWTSMMIGY----GAH---GHGKEAIELFDEMVKSGVRPDRIVFM 419 (609)
Q Consensus 352 ~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~ 419 (609)
++.--.++...| ++++++.+++.+.. .+..+|+.-...+ ... +++++++++++++.+.. +-|..+|.
T Consensus 70 Wn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~ 148 (306)
T 3dra_A 70 WIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWS 148 (306)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 333334444444 56666666655542 2334454443333 333 56777777777777642 23555666
Q ss_pred HHHHHHhccCCHH--HHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCC------HHHHHHHHHhC-CCCC-CHhhHHHHH
Q 007288 420 AVLTACSHAGLVD--EGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR------VKEAYELIKSM-PFKP-DESVWGPLL 489 (609)
Q Consensus 420 ~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~-~~~p-~~~~~~~l~ 489 (609)
.-...+.+.|.++ +++++++++.+.++. |...|+.-...+.+.|+ ++++++.++++ ...| |...|+.+.
T Consensus 149 ~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~ 227 (306)
T 3dra_A 149 YRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLL 227 (306)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHH
Confidence 6666666666666 777777777665543 56666666666666665 77777777665 3333 667777777
Q ss_pred HHHHhCCChH-HHHHHHHHHhccC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 490 GACKEHRLPN-LGKLAALRVLDLK---PNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 490 ~~~~~~~~~~-~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
..+.+.|+.. .....++++.+++ |.++..+..++.+|.+.|+.++|+++++.+.+
T Consensus 228 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 228 GIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 7777777643 3555666666655 66777888888888888888888888888875
No 110
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.73 E-value=3.1e-07 Score=82.44 Aligned_cols=119 Identities=10% Similarity=0.013 Sum_probs=57.9
Q ss_pred HHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHH
Q 007288 423 TACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNL 500 (609)
Q Consensus 423 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 500 (609)
..+...|++++|+..|++.. .|+...+..+...|.+.|++++|++.+++. ...| +...|..+..++...|++++
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~ 89 (213)
T 1hh8_A 14 VLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL 89 (213)
T ss_dssp HHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHH
Confidence 33444444444444444431 233444444444444444444444444443 1112 23344444455555555555
Q ss_pred HHHHHHHHhccCCCCc----------------chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 501 GKLAALRVLDLKPNMM----------------GTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 501 a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
|...++++++..|.+. ..+..++.+|...|++++|...+++..+.
T Consensus 90 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 90 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 5555555555444443 55555566666666666666665555543
No 111
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.72 E-value=5e-08 Score=81.90 Aligned_cols=98 Identities=8% Similarity=-0.075 Sum_probs=84.4
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007288 449 NKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 526 (609)
+...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4556677888888999999999999887 3344 6677888888999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 007288 527 AAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 527 ~~~g~~~~A~~~~~~m~~~~ 546 (609)
...|++++|...|++..+..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999987743
No 112
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.70 E-value=1.5e-07 Score=76.38 Aligned_cols=108 Identities=9% Similarity=-0.045 Sum_probs=64.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHh
Q 007288 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKE 494 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 494 (609)
.+......+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 45555556666666666666666665443 224555666666666666666666666555 2223 34556666666666
Q ss_pred CCChHHHHHHHHHHhccCCCCcchHHHHHHH
Q 007288 495 HRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525 (609)
Q Consensus 495 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 525 (609)
.|++++|+..++++++++|++...+..|..+
T Consensus 94 ~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 6666666666666666666666655555443
No 113
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.68 E-value=5.4e-07 Score=85.55 Aligned_cols=163 Identities=10% Similarity=-0.056 Sum_probs=120.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHHhhhcCC---CCC--hh
Q 007288 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR-----IVFMAVLTACSHAGLVDEGLKYFKSMNDYNV---NPN--KE 451 (609)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~ 451 (609)
.+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566778889999999998888775322111 1234455667788899999999988754321 111 45
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-----HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC------Cc
Q 007288 452 IYGCVVDLLGRAGRVKEAYELIKSM----PFKPD-----ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN------MM 516 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~ 516 (609)
+++.+...|...|++++|+..+++. ...|+ ..++..+..+|...|++++|...+++++++.+. ..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888999999999999999988776 11222 257778888999999999999999999876431 15
Q ss_pred chHHHHHHHHHhcCChHHH-HHHHHHHHh
Q 007288 517 GTYIILSNIYAAEGKWEEF-AKFRKIMRG 544 (609)
Q Consensus 517 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 544 (609)
.+|..++.+|...|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788999999999999999 777887754
No 114
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.65 E-value=3.7e-07 Score=79.24 Aligned_cols=156 Identities=14% Similarity=0.003 Sum_probs=102.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-Hhc
Q 007288 352 ANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTA-CSH 427 (609)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~ 427 (609)
+..+...+.+.|++++|...|+...+ .+...+..+...+...|++++|+..+++.... .|+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 34455667777888888888877774 34566777777788888888888888777653 3333322222111 112
Q ss_pred cCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HhhHHHHHHHHHhCCChHHHHH
Q 007288 428 AGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD---ESVWGPLLGACKEHRLPNLGKL 503 (609)
Q Consensus 428 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~~~~~~a~~ 503 (609)
.+...+|+..+++..+.. +-+...+..+...+...|++++|+..|+++ ...|+ ...+..+..++...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 222334677777776544 225677777888888888888888888776 44554 4467777788888888888888
Q ss_pred HHHHHhc
Q 007288 504 AALRVLD 510 (609)
Q Consensus 504 ~~~~~~~ 510 (609)
.+++.+.
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877653
No 115
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.65 E-value=2.9e-07 Score=87.04 Aligned_cols=134 Identities=10% Similarity=-0.035 Sum_probs=113.6
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhHHHHH-H
Q 007288 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDESVWGPLL-G 490 (609)
Q Consensus 413 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~-~ 490 (609)
.+...+..+...+...|++++|...|+++.+... -+...+..+...+.+.|++++|...++++ ...|+........ .
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 3445777788889999999999999999977553 36778889999999999999999999998 4567655443333 3
Q ss_pred HHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 491 ACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 491 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
.+...++.+.|...++++++.+|++...+..++.+|...|++++|...++++.+..+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p 250 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDL 250 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Confidence 367788889999999999999999999999999999999999999999999988654
No 116
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.64 E-value=1.3e-06 Score=78.16 Aligned_cols=131 Identities=10% Similarity=0.006 Sum_probs=91.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCC
Q 007288 355 LIDMYAKCGNISDSQKIFSEMSD--R-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP-DRIVFMAVLTACSHAGL 430 (609)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~ 430 (609)
+..+|.+.|++++|...|+...+ | +...|..+..++...|++++|+..|++..+. .| +..++..+...+...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhH
Confidence 78888889999999999988763 3 5678888888999999999999999998884 44 45677777777765543
Q ss_pred --HHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhHHHHH
Q 007288 431 --VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDESVWGPLL 489 (609)
Q Consensus 431 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 489 (609)
.+.+...++.... ..|....+..+..++...|++++|+..|++. ...|+......+.
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~ 197 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3444555554432 2233333444566667788999999999887 6778766554444
No 117
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.64 E-value=2.2e-07 Score=75.41 Aligned_cols=97 Identities=8% Similarity=0.003 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007288 450 KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 527 (609)
...+......|.+.|++++|++.|++. ...| +...|..+..++.+.|++++|+..++++++++|++...|..++.+|.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 456777889999999999999999987 4445 57788888999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 007288 528 AEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 528 ~~g~~~~A~~~~~~m~~~~ 546 (609)
..|++++|++.|++..+..
T Consensus 93 ~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHC
Confidence 9999999999999998743
No 118
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.63 E-value=4.1e-05 Score=77.97 Aligned_cols=201 Identities=11% Similarity=-0.034 Sum_probs=114.0
Q ss_pred HHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH-HHHHHhcC
Q 007288 298 CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDS-QKIFSEMS 376 (609)
Q Consensus 298 a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 376 (609)
+..+|+++... .+-+...|...+..+...|+.+.|..++++.... +.+...+.. |....+.++. ..+.+...
T Consensus 198 v~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~ 270 (493)
T 2uy1_A 198 MHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYS 270 (493)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHH
Confidence 45677776653 2334556666666677778888888888888877 333322221 2221111111 11121110
Q ss_pred --C-------C---CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHhhh
Q 007288 377 --D-------R---DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH-AGLVDEGLKYFKSMND 443 (609)
Q Consensus 377 --~-------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~ 443 (609)
. + ....|...+....+.++.+.|..+|++. +.. ..+...|......-.. .++.+.|..+|+...+
T Consensus 271 ~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~ 348 (493)
T 2uy1_A 271 MGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLL 348 (493)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred hhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 0 0 1134555555555667788888888877 321 2233344322211111 2357888888887754
Q ss_pred cCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhc
Q 007288 444 YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD 510 (609)
Q Consensus 444 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 510 (609)
.- +-+...+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..++++...
T Consensus 349 ~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 349 KH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 32 2234455666777777788888888888873 2456677777776777777777777776653
No 119
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.62 E-value=9.7e-07 Score=80.06 Aligned_cols=184 Identities=11% Similarity=0.017 Sum_probs=129.2
Q ss_pred CHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCcc----hHH
Q 007288 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG--NLALANALIDMYAKCGNISDSQKIFSEMSD--RDLV----TWT 384 (609)
Q Consensus 313 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~ 384 (609)
+...+..+...+...|++++|...|+.+.+..... ....+..+..+|.+.|++++|...|+.+.+ |+.. .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34455666778889999999999999999864322 235677889999999999999999999873 4322 455
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhhhcC
Q 007288 385 SMMIGYGA------------------HGHGKEAIELFDEMVKSGVRPDRI-VFMAVLTACSHAGLVDEGLKYFKSMNDYN 445 (609)
Q Consensus 385 ~li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 445 (609)
.+..++.. .|++++|+..|+++++. .|+.. ....... ...+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH---
Confidence 55555554 57899999999999984 45443 2211110 000111110
Q ss_pred CCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----hhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCc
Q 007288 446 VNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDE----SVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMM 516 (609)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 516 (609)
.....+...|.+.|++++|+..|+++ ...|+. ..+..+..++.+.|+.++|...++.+....|++.
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 11234667888999999999999887 333442 4577778899999999999999999988888654
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.62 E-value=1.7e-06 Score=77.49 Aligned_cols=144 Identities=11% Similarity=-0.050 Sum_probs=89.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 007288 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD 432 (609)
Q Consensus 353 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 432 (609)
..+...+...|++++|...|++...++...|..+..+|...|++++|+..|++..+.. +.+...+..+...+...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3455566677777777777777766666677777777777777777777777766642 234456666666666777777
Q ss_pred HHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhcc
Q 007288 433 EGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDL 511 (609)
Q Consensus 433 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 511 (609)
+|+..|+...+......... +...| +...| ....+..+..++...|++++|...+++++++
T Consensus 89 ~A~~~~~~al~~~~~~~~~~-------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLID-------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEE-------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCccHHH-------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 77777766654321111000 00000 01222 2356667778888888888888888888888
Q ss_pred CCCC
Q 007288 512 KPNM 515 (609)
Q Consensus 512 ~p~~ 515 (609)
.|.+
T Consensus 151 ~p~~ 154 (213)
T 1hh8_A 151 KSEP 154 (213)
T ss_dssp CCSG
T ss_pred Cccc
Confidence 8854
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.61 E-value=6.6e-07 Score=76.46 Aligned_cols=127 Identities=10% Similarity=-0.028 Sum_probs=97.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHh
Q 007288 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKE 494 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 494 (609)
.+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|++.+++. ...| +...|..+..++..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 45556666777778888888777775543 235667777778888888888888888776 2233 46677888888999
Q ss_pred CCChHHHHHHHHHHhccCCCCcchHHHHHH--HHHhcCChHHHHHHHHHHHh
Q 007288 495 HRLPNLGKLAALRVLDLKPNMMGTYIILSN--IYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 495 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~A~~~~~~m~~ 544 (609)
.|++++|...++++++..|.+...+..+.. .+...|++++|+..+.+...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999988877755444 48888999999999887754
No 122
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.61 E-value=1.5e-07 Score=90.03 Aligned_cols=195 Identities=7% Similarity=-0.003 Sum_probs=148.3
Q ss_pred hhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-cCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 007288 326 TLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK-CGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404 (609)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 404 (609)
..|++++|..++++..+.... . +.+ .++++.|...|... ...|...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHH
Confidence 357788888888887764221 1 122 58889998887653 567889999999999999
Q ss_pred HHHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhc----CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHH
Q 007288 405 EMVKS----GVRPD-RIVFMAVLTACSHAGLVDEGLKYFKSMNDY----NVNP-NKEIYGCVVDLLGRAGRVKEAYELIK 474 (609)
Q Consensus 405 ~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 474 (609)
+..+. |-.+. ..+|..+...|...|++++|+..|++..+. |-.. ...++..+...|.. |++++|++.++
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 88762 21111 247888899999999999999999987432 2111 14577888899988 99999999998
Q ss_pred hC-CCCC---C----HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCc------chHHHHHHHHHhcCChHHHHHHHH
Q 007288 475 SM-PFKP---D----ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMM------GTYIILSNIYAAEGKWEEFAKFRK 540 (609)
Q Consensus 475 ~~-~~~p---~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~ 540 (609)
+. .+.| + ..++..+...+.+.|++++|+..+++++++.|.+. ..+..++.++...|++++|...++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77 1111 1 45677888999999999999999999999766432 366778888999999999999999
Q ss_pred HHH
Q 007288 541 IMR 543 (609)
Q Consensus 541 ~m~ 543 (609)
+..
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 998
No 123
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.60 E-value=5e-07 Score=75.16 Aligned_cols=97 Identities=10% Similarity=-0.084 Sum_probs=82.8
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007288 449 NKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 526 (609)
+...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|...++++++++|+++..+..++.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3445666777888899999999988887 3344 5677888888899999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 007288 527 AAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 527 ~~~g~~~~A~~~~~~m~~~ 545 (609)
...|++++|...+++..+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999998774
No 124
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.59 E-value=1.4e-07 Score=88.85 Aligned_cols=192 Identities=7% Similarity=-0.047 Sum_probs=122.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007288 349 LALANALIDMYAKCGNISDSQKIFSEMS--DR-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTAC 425 (609)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 425 (609)
...+..+...+.+.|++++|...|+... .| +...|..+..+|...|++++|+..+++..+.. +-+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3445566667777777777777777665 23 55677777888888888888888888877642 23456777788888
Q ss_pred hccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHH
Q 007288 426 SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAA 505 (609)
Q Consensus 426 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 505 (609)
...|++++|...|++..+.+.. +...+...+....+..+...... .......++......+ ..+. .|++++|.+.+
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l~-~~~~~~A~~~~ 158 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRLI-AAERERELEEC 158 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHHH-HHHHHHHHTTT
T ss_pred HHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHHH-HHHHHHHHHHH
Confidence 8888888888888887543211 11011111111111111111111 2222223333333333 3332 68899999999
Q ss_pred HHHhccCCCCcchHHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 007288 506 LRVLDLKPNMMGTYIILSNIYAAE-GKWEEFAKFRKIMRGM 545 (609)
Q Consensus 506 ~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 545 (609)
+++++.+|++......+...+.+. +.+++|.++|.+..+.
T Consensus 159 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 159 QRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp SGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999998777777787777776 7789999999988763
No 125
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.58 E-value=6.4e-06 Score=78.03 Aligned_cols=157 Identities=8% Similarity=-0.042 Sum_probs=116.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCC---c------chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 007288 355 LIDMYAKCGNISDSQKIFSEMSDRD---L------VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR-PD----RIVFMA 420 (609)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~~~~~~---~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ 420 (609)
.+..+...|++++|...++...+.. . ..+..+...+...|++++|+..+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4667788899999999998876421 1 12334666677778999999999999884222 22 236888
Q ss_pred HHHHHhccCCHHHHHHHHHHhhh----c-CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HhhHH
Q 007288 421 VLTACSHAGLVDEGLKYFKSMND----Y-NVNP-NKEIYGCVVDLLGRAGRVKEAYELIKSM-------PFKPD-ESVWG 486 (609)
Q Consensus 421 ll~~~~~~~~~~~a~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~ 486 (609)
+...|...|++++|...++++.+ . +..+ ...++..+...|.+.|++++|++.+++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999998853 1 1122 2347788999999999999999988876 22222 56778
Q ss_pred HHHHHHHhCCC-hHHHHHHHHHHhcc
Q 007288 487 PLLGACKEHRL-PNLGKLAALRVLDL 511 (609)
Q Consensus 487 ~l~~~~~~~~~-~~~a~~~~~~~~~~ 511 (609)
.+..++.+.|+ +++|...+++++.+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 88889999995 69999999988763
No 126
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.57 E-value=3.4e-06 Score=75.57 Aligned_cols=162 Identities=8% Similarity=-0.098 Sum_probs=102.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CCcchHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007288 348 NLALANALIDMYAKCGNISDSQKIFSEMSD-RDLVTWTSMMIGYGAHG----HGKEAIELFDEMVKSGVRPDRIVFMAVL 422 (609)
Q Consensus 348 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~~~~~ll 422 (609)
+...+..|...|...+++++|...|+...+ .+...+..|...|.. + ++++|++.|++..+.| +...+..|.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 344444455555555566666655555543 244455555555555 4 6777777777777654 455666666
Q ss_pred HHHhc----cCCHHHHHHHHHHhhhcCCC-CChhHHHHHHHHHhh----cCCHHHHHHHHHhC-CCCCCHhhHHHHHHHH
Q 007288 423 TACSH----AGLVDEGLKYFKSMNDYNVN-PNKEIYGCVVDLLGR----AGRVKEAYELIKSM-PFKPDESVWGPLLGAC 492 (609)
Q Consensus 423 ~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~ 492 (609)
..|.. .+++++|+.+|++..+.+.. .+...+..|...|.. .+++++|+..|++. ...++...+..|...|
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y 172 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMF 172 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 66666 67788888888877665521 125666677777777 67788888888776 2224555666666666
Q ss_pred HhC------CChHHHHHHHHHHhccCC
Q 007288 493 KEH------RLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 493 ~~~------~~~~~a~~~~~~~~~~~p 513 (609)
... .+.++|...++++.+...
T Consensus 173 ~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 173 QQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 543 278888888888877654
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.56 E-value=1.2e-06 Score=70.53 Aligned_cols=114 Identities=18% Similarity=0.203 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHhhHHHHHHHHH
Q 007288 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFK-PDESVWGPLLGACK 493 (609)
Q Consensus 416 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~ 493 (609)
..+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...++++ ... .+..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 456666666777777777777777775543 234566667777777777777777777766 222 35567777778888
Q ss_pred hCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 007288 494 EHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEG 530 (609)
Q Consensus 494 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 530 (609)
..|++++|...++++++..|.+...+..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8888888888888888888888888888877776544
No 128
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.55 E-value=6e-07 Score=86.96 Aligned_cols=127 Identities=13% Similarity=-0.033 Sum_probs=96.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC--------------hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-
Q 007288 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN--------------KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP- 480 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 480 (609)
.+..+...+.+.|++++|+..|++..+...... ...|..+..+|.+.|++++|+..+++. ...|
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 228 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 444455555555555555555555544332211 467788888888999999999888887 3334
Q ss_pred CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHH-HHHHHHHH
Q 007288 481 DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEF-AKFRKIMR 543 (609)
Q Consensus 481 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 543 (609)
+...|..+..++...|++++|+..++++++++|++...+..++.++...|++++| ...++.|.
T Consensus 229 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 229 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888889999999999999999999999999999999999999999999999 45666664
No 129
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.53 E-value=6.9e-05 Score=70.49 Aligned_cols=230 Identities=11% Similarity=0.049 Sum_probs=173.0
Q ss_pred HHhCC--chHHHHHHHHhHHCCCCCCHH-hHHHHHHHHHhhc--cHHHHHHHHHHHHHhCCCCchhHHHHHHHHH----H
Q 007288 290 YEKSG--SSECLNMFSKMKSERFSPNCF-TFTSIIAACATLA--ALSCGQQVHAGIVRRGLDGNLALANALIDMY----A 360 (609)
Q Consensus 290 ~~~~~--~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~ 360 (609)
..+.+ .++|+.++.+++.. .|+.. .++.--..+...+ +++++...+..+.... +-+..+++.-..++ .
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIME 118 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHH
Confidence 33444 67899999988874 45544 4566666666777 9999999999998875 33444454444444 4
Q ss_pred hc---CCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC--
Q 007288 361 KC---GNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGK--EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL-- 430 (609)
Q Consensus 361 ~~---g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-- 430 (609)
+. +++++++.+++.+.+ .+..+|+.-...+...|.++ ++++.++++.+... -|...|+.-...+...+.
T Consensus 119 ~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 119 LNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp HTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGC
T ss_pred hccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccc
Confidence 45 789999999999874 46678888888888888888 99999999998643 366677777666777776
Q ss_pred ----HHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHH-HHHHHHhC-CC----CCCHhhHHHHHHHHHhCCChHH
Q 007288 431 ----VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKE-AYELIKSM-PF----KPDESVWGPLLGACKEHRLPNL 500 (609)
Q Consensus 431 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~~~~~~ 500 (609)
++++++.++.+....+ -|...|+.+...+.+.|+..+ +.++..+. .. ..+...+..+..++.+.|+.++
T Consensus 198 ~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 8999999999977664 478889888888988888555 55677765 21 2366788888899999999999
Q ss_pred HHHHHHHHhc-cCCCCcchHHHHHH
Q 007288 501 GKLAALRVLD-LKPNMMGTYIILSN 524 (609)
Q Consensus 501 a~~~~~~~~~-~~p~~~~~~~~l~~ 524 (609)
|.++++.+.+ .+|-....|...+.
T Consensus 277 A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 277 SRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHHhccChHHHHHHHHHHh
Confidence 9999999986 89976666655443
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.53 E-value=1.1e-06 Score=71.43 Aligned_cols=116 Identities=9% Similarity=-0.014 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHH
Q 007288 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACK 493 (609)
Q Consensus 416 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 493 (609)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|++.+++. ...| +...+..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 456666677777777777877777775543 235667777777788888888888877776 2233 4567777778888
Q ss_pred hCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCh
Q 007288 494 EHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKW 532 (609)
Q Consensus 494 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 532 (609)
..|++++|...++++++..|.+...+..++.++...|++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999998888888899988888775
No 131
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.52 E-value=1.1e-06 Score=71.73 Aligned_cols=115 Identities=10% Similarity=0.027 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHH
Q 007288 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACK 493 (609)
Q Consensus 416 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 493 (609)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|++.+++. ...| +...+..+..++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 455666666666666666666666665433 224556666666677777777777766665 2223 4566677777788
Q ss_pred hCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 007288 494 EHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK 531 (609)
Q Consensus 494 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 531 (609)
..|++++|...++++++..|.+...+..++.++...|+
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888888888888888888777788888887776653
No 132
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.51 E-value=3.5e-07 Score=79.45 Aligned_cols=121 Identities=8% Similarity=0.096 Sum_probs=84.6
Q ss_pred hccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHH-HHhCCCh--HH
Q 007288 426 SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGA-CKEHRLP--NL 500 (609)
Q Consensus 426 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~~~~--~~ 500 (609)
...|++++|...++...+.. +.+...+..+...|...|++++|+..+++. ...| +...+..+..+ +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34566677777777665543 235566777777777777777777777766 2223 45566666666 6677887 88
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 501 GKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 501 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
|...++++++..|++...+..++.+|...|++++|...+++..+...
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 88888888888888888888888888888888888888888877544
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.50 E-value=1.3e-06 Score=73.21 Aligned_cols=104 Identities=12% Similarity=0.024 Sum_probs=86.6
Q ss_pred CCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHH
Q 007288 411 VRPDR-IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGP 487 (609)
Q Consensus 411 ~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 487 (609)
+.|+. ..+..+...+.+.|++++|+..|+.+.+.. +.+...|..+..+|...|++++|++.|++. ...| +...|..
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 34544 367778888899999999999999997765 336788889999999999999999999888 4445 4677888
Q ss_pred HHHHHHhCCChHHHHHHHHHHhccCCCC
Q 007288 488 LLGACKEHRLPNLGKLAALRVLDLKPNM 515 (609)
Q Consensus 488 l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 515 (609)
+..++...|++++|+..+++++++.|++
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 8899999999999999999999999954
No 134
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.49 E-value=0.00033 Score=71.22 Aligned_cols=351 Identities=8% Similarity=-0.047 Sum_probs=162.9
Q ss_pred HHhHHHHHHHccCChhHHHHhhccCCC--CCcccHHHHHHHHHcCCC-hhHHHHHHHHHHHC-CCCC-CcchHHHHHHHh
Q 007288 48 LATNLIKSYFDEGLIEEARTLFDEMPE--RDVVSWTVMIAGYTSFNC-HNQAWTVFVEMVRN-EVNP-NAFTLSSVLKAC 122 (609)
Q Consensus 48 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~-g~~p-~~~t~~~ll~~~ 122 (609)
+|...+..+-. |+++.|..+|++... |++..|..-+.-..+.+. .+....+|+..... |..| +...|...+.-+
T Consensus 17 vyer~l~~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~ 95 (493)
T 2uy1_A 17 IMEHARRLYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEE 95 (493)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHT
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHH
Confidence 44444544443 788999999987653 777788887777666553 45667777776653 4333 445666666554
Q ss_pred hC----CCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhc---C-------------CCHHHHHHHHccCCC----CC
Q 007288 123 KG----MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC---C-------------ISMDNARLVFNDMKW----KN 178 (609)
Q Consensus 123 ~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---g-------------~~~~~A~~~~~~~~~----~~ 178 (609)
.. .++++.+..++++.+... +. .+..+...|... . ..+..|..+++.... .+
T Consensus 96 ~~~~~~~~~~~~vR~iy~rAL~~P--~~--~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s 171 (493)
T 2uy1_A 96 GKIEDEQTRIEKIRNGYMRALQTP--MG--SLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWS 171 (493)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHTSC--CT--THHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HhchhhhHHHHHHHHHHHHHHhCh--hh--hHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Confidence 42 246777888888887631 11 112222222210 0 011122222221110 12
Q ss_pred hhhHHHHHHHHHhcC-C------hhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhH
Q 007288 179 DVSWTTLITGYAHSG-N------GYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251 (609)
Q Consensus 179 ~~~~~~li~~~~~~g-~------~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~ 251 (609)
...|...+.--...+ . .+.+..+|+++.... +-+...|...+.-+...|+++.|..+++..... +.+...
T Consensus 172 ~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l 248 (493)
T 2uy1_A 172 VKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFL 248 (493)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHH
T ss_pred HHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHH
Confidence 233444333322111 0 123455666655532 223445555555555666666666666666665 333222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCchHHHHHHHHhHHCCCCC---CHHhHHHHHHHHHhhc
Q 007288 252 MNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSP---NCFTFTSIIAACATLA 328 (609)
Q Consensus 252 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~p---~~~t~~~ll~~~~~~~ 328 (609)
+.. |....+.++. ++ .+...+.....+ ..+..+ ....|...+....+.+
T Consensus 249 ~~~----y~~~~e~~~~---~~-----------~l~~~~~~~~~~----------~~~~~~~~~~~~lw~~y~~~~~r~~ 300 (493)
T 2uy1_A 249 SLY----YGLVMDEEAV---YG-----------DLKRKYSMGEAE----------SAEKVFSKELDLLRINHLNYVLKKR 300 (493)
T ss_dssp HHH----HHHHTTCTHH---HH-----------HHHHHTC--------------------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHH----HHhhcchhHH---HH-----------HHHHHHHhhccc----------hhhhhcccccHHHHHHHHHHHHHcC
Confidence 221 1111111111 00 000000000000 000000 1123444444444555
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHH
Q 007288 329 ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG-NISDSQKIFSEMSD--R-DLVTWTSMMIGYGAHGHGKEAIELFD 404 (609)
Q Consensus 329 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~ 404 (609)
+.+.|..+|+.+ +.. ..+..+|......-.+.+ +.+.|..+|+...+ | +...|...+......|+.+.|..+|+
T Consensus 301 ~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~e 378 (493)
T 2uy1_A 301 GLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFK 378 (493)
T ss_dssp CHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666666666 211 122233332222222222 46666666665542 2 22334445555556666677766666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007288 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441 (609)
Q Consensus 405 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 441 (609)
++. .....|...+.--...|+.+.+..++++.
T Consensus 379 r~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 379 RLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp HSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 651 13445555555555567777777766666
No 135
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.47 E-value=1e-06 Score=71.44 Aligned_cols=97 Identities=12% Similarity=0.002 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007288 450 KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 527 (609)
...+..+...+.+.|++++|+..|++. ...| +...|..+..++.+.|++++|+..++++++++|++...|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345666777788888888888888776 3334 56777888888889999999999999999999988899999999999
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 007288 528 AEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 528 ~~g~~~~A~~~~~~m~~~~ 546 (609)
..|++++|...+++..+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 9999999999999887743
No 136
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.45 E-value=1e-06 Score=69.40 Aligned_cols=99 Identities=15% Similarity=0.015 Sum_probs=79.4
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC--CcchHHHHHH
Q 007288 449 NKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN--MMGTYIILSN 524 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 524 (609)
+...+..+...+...|++++|+..+++. ...| +...|..+..++...|++++|...++++++..|. +...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3445666777777888888888888776 2223 5667777888888999999999999999999998 8888999999
Q ss_pred HHHhc-CChHHHHHHHHHHHhCCC
Q 007288 525 IYAAE-GKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 525 ~~~~~-g~~~~A~~~~~~m~~~~~ 547 (609)
+|... |++++|.+.+++..+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999999887654
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.43 E-value=2.5e-06 Score=75.70 Aligned_cols=129 Identities=11% Similarity=-0.042 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhh----cCCC-CChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-C----
Q 007288 416 IVFMAVLTACSHAGLVDEGLKYFKSMND----YNVN-PNKEIYGCVVDLLGRAGRVKEAYELIKSM----PFKP-D---- 481 (609)
Q Consensus 416 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~---- 481 (609)
.++..+...+...|++++|...+++..+ .+.. ....++..+...+...|++++|.+.+++. ...+ +
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3445555555555555555555555422 1111 12334555555566666666665555544 0011 1
Q ss_pred HhhHHHHHHHHHhCCChHHHHHHHHHHhccCC--CC----cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 482 ESVWGPLLGACKEHRLPNLGKLAALRVLDLKP--NM----MGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 482 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
...+..+...+...|++++|...+++++++.+ ++ ..++..++.+|...|++++|...+++..+
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 22344555666666777777777766655321 11 22356778888888888888888777764
No 138
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.42 E-value=4.1e-06 Score=71.48 Aligned_cols=93 Identities=8% Similarity=-0.072 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 007288 452 IYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 529 (609)
.+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|++...|..++.+|...
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3334444444444444444444443 1122 3334444444455555555555555555555555555555555555555
Q ss_pred CChHHHHHHHHHHHh
Q 007288 530 GKWEEFAKFRKIMRG 544 (609)
Q Consensus 530 g~~~~A~~~~~~m~~ 544 (609)
|++++|+..|++..+
T Consensus 93 g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 93 ADYKGAKEAYEKGIE 107 (164)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 555555555555444
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.41 E-value=4.1e-06 Score=77.02 Aligned_cols=183 Identities=10% Similarity=0.030 Sum_probs=113.4
Q ss_pred hcCCHHHHHHHHHhcCC--C-CcchHHHH-------HHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------
Q 007288 361 KCGNISDSQKIFSEMSD--R-DLVTWTSM-------MIGYGAHGHGKEAIELFDEMVKSGVRPD---------------- 414 (609)
Q Consensus 361 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~---------------- 414 (609)
..++.+.|.+.|.++.+ | ....|..+ ...+...++..+++..++.-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 35666666666666653 2 23455555 3344444444444444444333 2221
Q ss_pred ------HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH----hh
Q 007288 415 ------RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDE----SV 484 (609)
Q Consensus 415 ------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~ 484 (609)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+.....|+. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a 173 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAA 173 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHH
Confidence 1233345566777888888888887775533 33325555666777888888888888766433332 25
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHhccC--CC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 485 WGPLLGACKEHRLPNLGKLAALRVLDLK--PN-MMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 485 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
+..+..++...|++++|+..++++.... |. .......++.++.+.|+.++|...|+++....+
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 5666677888888888888888886533 43 344677788888888888888888888876443
No 140
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.40 E-value=1.1e-06 Score=70.74 Aligned_cols=96 Identities=14% Similarity=-0.024 Sum_probs=82.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 007288 452 IYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 529 (609)
.+..+...+.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|++...+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3445677888999999999999887 3445 5677888889999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCC
Q 007288 530 GKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 530 g~~~~A~~~~~~m~~~~~ 547 (609)
|++++|+..+++..+..+
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999999987543
No 141
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.40 E-value=1.6e-06 Score=76.94 Aligned_cols=151 Identities=13% Similarity=0.050 Sum_probs=87.7
Q ss_pred hcCCHHHHHH---HHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHhccCCHH
Q 007288 361 KCGNISDSQK---IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK----SGVRP-DRIVFMAVLTACSHAGLVD 432 (609)
Q Consensus 361 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p-~~~~~~~ll~~~~~~~~~~ 432 (609)
..|++++|.+ .+..-.......+..+...+...|++++|...+++..+ .|..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3456666666 33332222334566666666677777777777766654 11111 1235666667777777777
Q ss_pred HHHHHHHHhhhc----CCCC--ChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HhhHHHHHHHHHhCCCh
Q 007288 433 EGLKYFKSMNDY----NVNP--NKEIYGCVVDLLGRAGRVKEAYELIKSM----PFKPD----ESVWGPLLGACKEHRLP 498 (609)
Q Consensus 433 ~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~~~~ 498 (609)
+|...+++..+. +-.+ ....+..+...+...|++++|...+++. ...++ ..++..+..++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 777777766332 1111 2344666777777777877777777665 11112 22345566777888888
Q ss_pred HHHHHHHHHHhcc
Q 007288 499 NLGKLAALRVLDL 511 (609)
Q Consensus 499 ~~a~~~~~~~~~~ 511 (609)
++|...+++++++
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888777664
No 142
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.39 E-value=8.3e-07 Score=72.11 Aligned_cols=93 Identities=4% Similarity=-0.053 Sum_probs=64.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcc-------hHHHH
Q 007288 452 IYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG-------TYIIL 522 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l 522 (609)
.+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..+++++++.|.+.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4555666777777777777777665 3334 3556666777777777777777777777777664432 56667
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 007288 523 SNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 523 ~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
+.+|...|++++|++.|++...
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 7777788888888888877765
No 143
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.39 E-value=1.6e-06 Score=72.53 Aligned_cols=103 Identities=6% Similarity=-0.076 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHH
Q 007288 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACK 493 (609)
Q Consensus 416 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 493 (609)
..+..+...+...|++++|+..|+...... +.+...|..+..+|...|++++|+..|++. ...| +...+..+..++.
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 356667777888888888888888886654 336777788888888888898888888877 3334 4567777888899
Q ss_pred hCCChHHHHHHHHHHhccCCCCcchH
Q 007288 494 EHRLPNLGKLAALRVLDLKPNMMGTY 519 (609)
Q Consensus 494 ~~~~~~~a~~~~~~~~~~~p~~~~~~ 519 (609)
..|++++|+..+++++++.|+++...
T Consensus 101 ~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 99999999999999999888766543
No 144
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.37 E-value=3.2e-06 Score=69.48 Aligned_cols=98 Identities=11% Similarity=0.016 Sum_probs=80.2
Q ss_pred CChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHH
Q 007288 448 PNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525 (609)
Q Consensus 448 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 525 (609)
.+...+..+...+...|++++|+..|++. ...| +...|..+..++...|++++|...+++++++.|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 35666777777888888888888887776 2333 466777788888899999999999999999999888999999999
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 007288 526 YAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 526 ~~~~g~~~~A~~~~~~m~~~ 545 (609)
|...|++++|...+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999988764
No 145
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.36 E-value=3.2e-06 Score=68.90 Aligned_cols=100 Identities=9% Similarity=0.034 Sum_probs=89.5
Q ss_pred CCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHH
Q 007288 447 NPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524 (609)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 524 (609)
+.+...+..+...+...|++++|++.+++. ...| +...+..+..++...|++++|...++++++..|.+...+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345677888999999999999999999987 4455 67788888899999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCC
Q 007288 525 IYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 525 ~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
+|...|++++|...+++..+..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999998743
No 146
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.35 E-value=7.3e-06 Score=77.64 Aligned_cols=159 Identities=7% Similarity=-0.067 Sum_probs=109.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--CC-c------chHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HHHH
Q 007288 353 NALIDMYAKCGNISDSQKIFSEMSD--RD-L------VTWTSMMIGYGAHGHGKEAIELFDEMVKSGV---RPD--RIVF 418 (609)
Q Consensus 353 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~~~ 418 (609)
...+..+...|++++|.+.++...+ +. . ..+..+...+...|++++|+..+++..+... .+. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3455667778888888777765442 11 1 1233455667778899999998888875321 122 3478
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhc-CCCCC-----hhHHHHHHHHHhhcCCHHHHHHHHHhC-C------CCC-CHhh
Q 007288 419 MAVLTACSHAGLVDEGLKYFKSMNDY-NVNPN-----KEIYGCVVDLLGRAGRVKEAYELIKSM-P------FKP-DESV 484 (609)
Q Consensus 419 ~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~------~~p-~~~~ 484 (609)
+.+...|...|++++|...+++..+. ...|+ ..++..+...|.+.|++++|++.+++. . ... -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 88888888999999999998887421 11112 257788888999999999998888776 1 111 1556
Q ss_pred HHHHHHHHHhCCChHHH-HHHHHHHhcc
Q 007288 485 WGPLLGACKEHRLPNLG-KLAALRVLDL 511 (609)
Q Consensus 485 ~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 511 (609)
|..+..++...|++++| ...+++++.+
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 77778889999999999 7778877653
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.34 E-value=8.8e-06 Score=64.47 Aligned_cols=108 Identities=16% Similarity=0.070 Sum_probs=57.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHh
Q 007288 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKE 494 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 494 (609)
.+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++. ...| +...+..+..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34444455555555555555555554332 123444555555555555555555555544 1222 34455555566666
Q ss_pred CCChHHHHHHHHHHhccCCCCcchHHHHHHH
Q 007288 495 HRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525 (609)
Q Consensus 495 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 525 (609)
.|++++|...++++++..|+++..+..++.+
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 6666666666666666666555555554443
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.33 E-value=4.1e-06 Score=66.50 Aligned_cols=99 Identities=11% Similarity=0.051 Sum_probs=87.6
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007288 449 NKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 526 (609)
....+..+...+...|++++|...+++. ...| +...+..+..++...|++++|...++++++..|.+...+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3456778889999999999999999987 3334 6777888889999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCCC
Q 007288 527 AAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 527 ~~~g~~~~A~~~~~~m~~~~~ 547 (609)
...|++++|...+++..+.++
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHhhHHHHHHHHHHHHHcCC
Confidence 999999999999999987544
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.33 E-value=3.5e-06 Score=74.60 Aligned_cols=96 Identities=9% Similarity=-0.094 Sum_probs=70.3
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 007288 451 EIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA 528 (609)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 528 (609)
..+..+..+|.+.|++++|+..+++. ...| +...+..+..++...|++++|...+++++++.|.+...+..+..++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 56667777888888888888888776 3333 566777888889999999999999999999999999999999999998
Q ss_pred cCChHHHH-HHHHHHHhCC
Q 007288 529 EGKWEEFA-KFRKIMRGMG 546 (609)
Q Consensus 529 ~g~~~~A~-~~~~~m~~~~ 546 (609)
.|+.+++. ..+..|...+
T Consensus 169 ~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 88888777 5555555443
No 150
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.33 E-value=1.1e-06 Score=80.77 Aligned_cols=192 Identities=8% Similarity=-0.087 Sum_probs=127.1
Q ss_pred hhccHHHHHHHHHHHHHhCCCCchhHHHHH-------HHHHHhcCCHHHHHHHHHhcCC--C-------C-c--------
Q 007288 326 TLAALSCGQQVHAGIVRRGLDGNLALANAL-------IDMYAKCGNISDSQKIFSEMSD--R-------D-L-------- 380 (609)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~--~-------~-~-------- 380 (609)
..++...|.+.|.++.+.. +-....|..+ ...+.+.++..++...++.-.+ | + .
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4567777777777776654 2233444444 3444444444444444444432 1 1 0
Q ss_pred ------chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC--hhH
Q 007288 381 ------VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN--KEI 452 (609)
Q Consensus 381 ------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~ 452 (609)
..+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 12334566778889999999999888764 3555455555667889999999999998664422 121 236
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCCCC---CC--HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHH
Q 007288 453 YGCVVDLLGRAGRVKEAYELIKSMPFK---PD--ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522 (609)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 522 (609)
+..+..++...|++++|++.|++.... |. ...+.....++.+.|+.++|...|+++...+|+ ......|
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 677888999999999999999988212 43 235566678899999999999999999999996 5444444
No 151
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=5e-06 Score=69.25 Aligned_cols=95 Identities=7% Similarity=-0.073 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHH
Q 007288 450 KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD----ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 524 (609)
...+..+...+...|++++|++.|++. ...|+ ...|..+..++...|++++|...++++++..|.+...+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 444555555555666666666665554 33444 3455555566666666666666666666666666666666666
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 007288 525 IYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 525 ~~~~~g~~~~A~~~~~~m~~ 544 (609)
+|...|++++|...+++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666655
No 152
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.32 E-value=4.6e-06 Score=66.92 Aligned_cols=97 Identities=19% Similarity=0.252 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007288 450 KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 527 (609)
...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|...++++.+..|.+...+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999887 2233 56788888899999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 007288 528 AEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 528 ~~g~~~~A~~~~~~m~~~~ 546 (609)
..|++++|...++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999998753
No 153
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.30 E-value=5.2e-06 Score=71.86 Aligned_cols=127 Identities=8% Similarity=0.080 Sum_probs=97.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHH-HhhcCCH--H
Q 007288 391 GAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL-LGRAGRV--K 467 (609)
Q Consensus 391 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 467 (609)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|++..+... .+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchH
Confidence 45678888888888887753 34567888888889999999999999999866542 356777778888 7788998 9
Q ss_pred HHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchH
Q 007288 468 EAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519 (609)
Q Consensus 468 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 519 (609)
+|+..+++. ...| +...+..+..++...|++++|...++++++..|++....
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 999999887 3344 466777888889999999999999999999999765543
No 154
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.28 E-value=3e-06 Score=70.23 Aligned_cols=62 Identities=15% Similarity=-0.047 Sum_probs=56.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHhcc-------CCCCcchH----HHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 484 VWGPLLGACKEHRLPNLGKLAALRVLDL-------KPNMMGTY----IILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
.|..+..++.+.|++++|+..+++++++ +|++...| ...+.++...|++++|+..|++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7778888888888888888888888888 99999999 99999999999999999999999873
No 155
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.28 E-value=9.6e-05 Score=70.34 Aligned_cols=32 Identities=9% Similarity=0.091 Sum_probs=27.9
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 513 PNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 513 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
+.++.+...|+++|...|+.++|.++++.+.+
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 45677888899999999999999999999974
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.28 E-value=8.4e-06 Score=65.90 Aligned_cols=109 Identities=7% Similarity=-0.157 Sum_probs=73.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHh
Q 007288 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKE 494 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 494 (609)
.+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..+++. ...| +...|..+..++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45555566667777777777777765544 224566677777777777777777777666 3334 35566777777888
Q ss_pred CCChHHHHHHHHHHhccC------CCCcchHHHHHHHH
Q 007288 495 HRLPNLGKLAALRVLDLK------PNMMGTYIILSNIY 526 (609)
Q Consensus 495 ~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 526 (609)
.|++++|...++++++++ |.+......+..+.
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 888888888888888877 66655555555443
No 157
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.26 E-value=1.5e-05 Score=80.98 Aligned_cols=115 Identities=9% Similarity=0.051 Sum_probs=53.5
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 007288 358 MYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434 (609)
Q Consensus 358 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 434 (609)
.+.+.|++++|...|++..+ .+...|..+..+|.+.|++++|++.+++..+.. +-+...+..+..++...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34455555555555555442 234455555555555555555555555555531 12334555555555555555555
Q ss_pred HHHHHHhhhcCCCCChhHHHHHHHH--HhhcCCHHHHHHHHH
Q 007288 435 LKYFKSMNDYNVNPNKEIYGCVVDL--LGRAGRVKEAYELIK 474 (609)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 474 (609)
.+.+++..+... .+...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555555543321 122233333333 444555555555554
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.26 E-value=6.1e-06 Score=68.47 Aligned_cols=105 Identities=9% Similarity=-0.074 Sum_probs=74.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHh
Q 007288 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKE 494 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 494 (609)
.+..+...+...|++++|...|+.....+ +.+...|..+..+|.+.|++++|+..|++. ...| +...+..+..++..
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 45555666777778888888887776544 235666777777788888888888887776 2333 44566677778888
Q ss_pred CCChHHHHHHHHHHhccCCCCcchHHHH
Q 007288 495 HRLPNLGKLAALRVLDLKPNMMGTYIIL 522 (609)
Q Consensus 495 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l 522 (609)
.|++++|...+++++++.|+++......
T Consensus 99 ~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 99 LGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 8888888888888888888666554443
No 159
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.25 E-value=1.6e-05 Score=67.65 Aligned_cols=127 Identities=9% Similarity=-0.001 Sum_probs=75.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHh
Q 007288 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461 (609)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 461 (609)
.+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34555566666677777777776666532 2245566666666677777777777777665543 234556666667777
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHhhHH--HHHHHHHhCCChHHHHHHHHHHhc
Q 007288 462 RAGRVKEAYELIKSM-PFKP-DESVWG--PLLGACKEHRLPNLGKLAALRVLD 510 (609)
Q Consensus 462 ~~g~~~~A~~~~~~~-~~~p-~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~ 510 (609)
..|++++|.+.+++. ...| +...+. .+...+...|++++|...+++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 777777777777665 2223 223332 222335566777777776665543
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.25 E-value=1.2e-05 Score=68.58 Aligned_cols=108 Identities=11% Similarity=-0.033 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHH
Q 007288 415 RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGAC 492 (609)
Q Consensus 415 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 492 (609)
...+..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..++
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3466677777788888888888888886654 236677788888888888888888888777 3344 467788888999
Q ss_pred HhCCChHHHHHHHHHHhccCCCCcchHHHHH
Q 007288 493 KEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523 (609)
Q Consensus 493 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 523 (609)
...|++++|...+++++++.|++...+...+
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999999998887655444
No 161
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.23 E-value=7.8e-06 Score=66.20 Aligned_cols=98 Identities=10% Similarity=0.016 Sum_probs=87.4
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007288 449 NKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 526 (609)
+...+..+...+...|++++|.+.+++. ...| +...+..+..++...|++++|...++++++..|++...+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567778889999999999999999987 3334 6778888889999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 007288 527 AAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 527 ~~~g~~~~A~~~~~~m~~~~ 546 (609)
...|++++|...+++..+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999998753
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.22 E-value=2e-05 Score=65.49 Aligned_cols=111 Identities=11% Similarity=-0.075 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHH
Q 007288 415 RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN----KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPL 488 (609)
Q Consensus 415 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 488 (609)
...+..+...+...|++++|...|++..+.. |+ ...+..+...|...|++++|+..+++. ...| +...+..+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 3455555556666666666666666664432 33 455666666667777777777766665 2233 45566667
Q ss_pred HHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007288 489 LGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527 (609)
Q Consensus 489 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 527 (609)
..++...|++++|...+++++++.|++...+..+..+..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 777888888888888888888888877766666665543
No 163
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.22 E-value=5.6e-06 Score=67.17 Aligned_cols=90 Identities=18% Similarity=0.082 Sum_probs=63.9
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCCH----hhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC---cchHHHHHHHHH
Q 007288 456 VVDLLGRAGRVKEAYELIKSM-PFKPDE----SVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM---MGTYIILSNIYA 527 (609)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 527 (609)
+...+...|++++|...|++. ...|+. ..+..+..++...|++++|...++++++..|++ +..+..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 455666677777777777665 223332 355566677777888888888888888887776 566777888888
Q ss_pred hcCChHHHHHHHHHHHhC
Q 007288 528 AEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 528 ~~g~~~~A~~~~~~m~~~ 545 (609)
..|++++|...++++.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 888888888888877764
No 164
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.20 E-value=8.1e-06 Score=66.17 Aligned_cols=95 Identities=9% Similarity=-0.010 Sum_probs=49.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC----C----HhhHHHH
Q 007288 418 FMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP----D----ESVWGPL 488 (609)
Q Consensus 418 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~----~~~~~~l 488 (609)
+..+...+.+.|++++|+..|++..+.. +-+...|..+..+|.+.|++++|++.+++. .+.| + ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3344444444555555555555444332 113444444555555555555555544443 1111 1 1244555
Q ss_pred HHHHHhCCChHHHHHHHHHHhccCC
Q 007288 489 LGACKEHRLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 489 ~~~~~~~~~~~~a~~~~~~~~~~~p 513 (609)
..++...|++++|++.++++++..|
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 5667777777777777777777666
No 165
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.17 E-value=1.6e-05 Score=80.55 Aligned_cols=95 Identities=12% Similarity=-0.061 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007288 450 KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 527 (609)
...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|++...+..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467778888888999999998888877 3334 56778888899999999999999999999999999999999999999
Q ss_pred hcCChHHHHH-HHHHHHh
Q 007288 528 AEGKWEEFAK-FRKIMRG 544 (609)
Q Consensus 528 ~~g~~~~A~~-~~~~m~~ 544 (609)
..|++++|.+ .++.|..
T Consensus 397 ~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 9999988874 4555543
No 166
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.17 E-value=2.7e-05 Score=78.34 Aligned_cols=162 Identities=8% Similarity=-0.084 Sum_probs=97.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHhhh----cCCCC-ChhH
Q 007288 383 WTSMMIGYGAHGHGKEAIELFDEMVKS-GVRPDRI----VFMAVLTACSHAGLVDEGLKYFKSMND----YNVNP-NKEI 452 (609)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~ 452 (609)
+..+...|...|++++|.+.+..+... +-.++.. +.+.+...+...|++++|..+++.... .+..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 455666677777777777777665541 1111111 222233334456777777777766522 22222 2446
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-----C--CCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCC---CC----cc
Q 007288 453 YGCVVDLLGRAGRVKEAYELIKSM-----P--FKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKP---NM----MG 517 (609)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~~-----~--~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p---~~----~~ 517 (609)
+..+...|...|++++|..++++. + .+| ....+..++..|...|++++|...+++++...+ .. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 667777788888888887777665 1 112 134566666778888888888888887766432 11 23
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 518 TYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
.+..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456677777788888888877766643
No 167
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.16 E-value=0.0016 Score=61.92 Aligned_cols=223 Identities=9% Similarity=0.012 Sum_probs=158.3
Q ss_pred chHHHHHHHHhHHCCCCCCH-HhHHHHHHHHHhhc-cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-C-CHHHHHH
Q 007288 295 SSECLNMFSKMKSERFSPNC-FTFTSIIAACATLA-ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC-G-NISDSQK 370 (609)
Q Consensus 295 ~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~A~~ 370 (609)
.++|++++.+++.. .|+. ..++.--..+...+ .++++..++..+.... +-+..+++.-..++.+. + ++++++.
T Consensus 70 se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 70 SERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 78899999998874 4544 44565556666677 5999999999998765 45566676666666666 6 8899999
Q ss_pred HHHhcCCC---CcchHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-------HH
Q 007288 371 IFSEMSDR---DLVTWTSMMIGYGAHGHGK--------EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL-------VD 432 (609)
Q Consensus 371 ~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-------~~ 432 (609)
+++.+.+. |..+|+.-...+.+.|.++ ++++.++++++.. .-|...|+.....+.+.+. ++
T Consensus 147 ~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 147 YIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHH
Confidence 99999864 4556666655555555555 8999999999864 3366788888777777776 78
Q ss_pred HHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCH--------------------HHHHHHHHhC-CC-------CCCHhh
Q 007288 433 EGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV--------------------KEAYELIKSM-PF-------KPDESV 484 (609)
Q Consensus 433 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~-~~-------~p~~~~ 484 (609)
++++.++++..... -|...|+.+-..+.+.|+. ....++..++ +. .+....
T Consensus 226 eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a 304 (349)
T 3q7a_A 226 DELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLA 304 (349)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHH
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHH
Confidence 99999999877553 3777887777777776654 3444454444 21 256777
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHh-ccCCCCcchHHHH
Q 007288 485 WGPLLGACKEHRLPNLGKLAALRVL-DLKPNMMGTYIIL 522 (609)
Q Consensus 485 ~~~l~~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~~l 522 (609)
+..|...|...|+.++|.++++.+. +.+|-....|.-.
T Consensus 305 l~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~ 343 (349)
T 3q7a_A 305 LEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFR 343 (349)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 8888899999999999999999986 6788444444433
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.15 E-value=1.7e-05 Score=65.12 Aligned_cols=100 Identities=8% Similarity=-0.144 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHH
Q 007288 414 DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGA 491 (609)
Q Consensus 414 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 491 (609)
+...+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|+..+++. ...| +...|..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45566666666777777777777777765544 224566666777777777777777777665 2233 45566677777
Q ss_pred HHhCCChHHHHHHHHHHhccCCC
Q 007288 492 CKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 492 ~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
+...|++++|...+++++++.|+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChh
Confidence 77788888888888887777765
No 169
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.11 E-value=1.4e-05 Score=67.55 Aligned_cols=93 Identities=16% Similarity=0.038 Sum_probs=59.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HhhHHHHHHHHHhCCChHHHHHHHHHHhccCC------CCcc
Q 007288 452 IYGCVVDLLGRAGRVKEAYELIKSM----PFKPD----ESVWGPLLGACKEHRLPNLGKLAALRVLDLKP------NMMG 517 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p------~~~~ 517 (609)
++..+...+...|++++|.+.+++. +..++ ...+..+..++...|++++|...++++++..+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4445555555556666655555544 00011 23455555667777777777777777765422 1244
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 518 TYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
.+..++.+|...|++++|...+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 677889999999999999999888765
No 170
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.11 E-value=0.0014 Score=62.12 Aligned_cols=225 Identities=11% Similarity=0.090 Sum_probs=111.9
Q ss_pred hCC--chHHHHHHHHhHHCCCCCCHHh-HHHHHHHHHhhcc----------HHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007288 292 KSG--SSECLNMFSKMKSERFSPNCFT-FTSIIAACATLAA----------LSCGQQVHAGIVRRGLDGNLALANALIDM 358 (609)
Q Consensus 292 ~~~--~~~a~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 358 (609)
+.| .++|+.++..+... .|+..| ++.--..+...+. ++.+..++..+.... +-+..+++.-.-+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 445 56778888877763 454433 3322222222221 456666666666554 3345555555555
Q ss_pred HHhcC--CHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----
Q 007288 359 YAKCG--NISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGH-GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHA---- 428 (609)
Q Consensus 359 ~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---- 428 (609)
+.+.| .+++++.+++.+.+ .|..+|+.-..++...|. ++++++.+.++++.. .-|...|+.....+...
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcc
Confidence 55555 36666666666653 344556655555556666 466777777776643 22444444444333332
Q ss_pred ----------CCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc-----------CCHHHHHHHHHhC-CCCCCHhhHH
Q 007288 429 ----------GLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA-----------GRVKEAYELIKSM-PFKPDESVWG 486 (609)
Q Consensus 429 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~-~~~p~~~~~~ 486 (609)
+.++++++.++...... +-|...|+.+-..+.+. +.++++++.++++ ...||. .|.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~ 274 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWC 274 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chH
Confidence 33556666666665433 22455554443333333 2344555555444 333433 222
Q ss_pred HHHH-----HHHhCCChHHHHHHHHHHhccCCCCcchHHHH
Q 007288 487 PLLG-----ACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522 (609)
Q Consensus 487 ~l~~-----~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 522 (609)
.+.. +....+..++....+.++.+++|....-|..+
T Consensus 275 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 275 LLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp HHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 1111 11123444555555555555555433334333
No 171
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.10 E-value=2e-05 Score=61.65 Aligned_cols=98 Identities=13% Similarity=0.069 Sum_probs=60.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHhhHHHHHHHH
Q 007288 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP---DESVWGPLLGAC 492 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~ 492 (609)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|++.+++. ...| +...+..+..++
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 34445555556666666666666654433 224455566666666666666666666655 2233 355666666777
Q ss_pred HhC-CChHHHHHHHHHHhccCCCC
Q 007288 493 KEH-RLPNLGKLAALRVLDLKPNM 515 (609)
Q Consensus 493 ~~~-~~~~~a~~~~~~~~~~~p~~ 515 (609)
... |++++|...++++++..|++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCC
Confidence 777 77777777777777777754
No 172
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.10 E-value=1.7e-05 Score=74.50 Aligned_cols=110 Identities=7% Similarity=-0.181 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHH
Q 007288 414 DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGA 491 (609)
Q Consensus 414 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 491 (609)
+...+..+...+...|++++|+..|+...+.. +.+...|..+..+|.+.|++++|+..+++. ...| +...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45677778888889999999999999886654 236778888888999999999999988876 5555 45677777788
Q ss_pred HHhCCChHHHHHHHHHHhccCCCCcchHHHHHH
Q 007288 492 CKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524 (609)
Q Consensus 492 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 524 (609)
+...|++++|...++++++++|++...+...+.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~ 114 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIP 114 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHH
Confidence 889999999999999998888865444433333
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.07 E-value=1.2e-05 Score=64.99 Aligned_cols=95 Identities=11% Similarity=0.022 Sum_probs=74.2
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC-------cchHHH
Q 007288 451 EIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM-------MGTYII 521 (609)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~ 521 (609)
..+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++++..|.+ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45566667777777777777777766 2223 45667777788888888888888888888877755 778889
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 007288 522 LSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 522 l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
++.+|...|++++|...+++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999998874
No 174
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.07 E-value=1.1e-05 Score=68.67 Aligned_cols=64 Identities=9% Similarity=-0.052 Sum_probs=53.9
Q ss_pred HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 482 ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 482 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
...|..+..++.+.|++++|+..++++++++|+++..|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3466677788888888888888888888888888888888888998899999998888888764
No 175
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.07 E-value=3.1e-06 Score=67.49 Aligned_cols=83 Identities=8% Similarity=-0.021 Sum_probs=57.1
Q ss_pred cCCHHHHHHHHHhC-CC---CC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHH
Q 007288 463 AGRVKEAYELIKSM-PF---KP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAK 537 (609)
Q Consensus 463 ~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 537 (609)
.|++++|+..|++. .. .| +...+..+..++...|++++|+..++++++..|+++..+..++.+|...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45666666666665 33 23 244566666777778888888888888888888777788888888888888888888
Q ss_pred HHHHHHhC
Q 007288 538 FRKIMRGM 545 (609)
Q Consensus 538 ~~~~m~~~ 545 (609)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88777653
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.07 E-value=8.2e-06 Score=82.96 Aligned_cols=115 Identities=10% Similarity=-0.023 Sum_probs=63.9
Q ss_pred HhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHH
Q 007288 425 CSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGK 502 (609)
Q Consensus 425 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 502 (609)
+.+.|++++|++.+++..+.. +.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 344555556665555554432 123455555566666666666666665555 2233 3445555566666666666666
Q ss_pred HHHHHHhccCCCCcchHHHHHHH--HHhcCChHHHHHHHH
Q 007288 503 LAALRVLDLKPNMMGTYIILSNI--YAAEGKWEEFAKFRK 540 (609)
Q Consensus 503 ~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 540 (609)
..+++++++.|++...+..++.+ +.+.|++++|++.++
T Consensus 95 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666666666666666666655 566666666666655
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.06 E-value=3.9e-05 Score=61.95 Aligned_cols=109 Identities=8% Similarity=-0.028 Sum_probs=61.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC----CCC----HhhHHH
Q 007288 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PF----KPD----ESVWGP 487 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~~ 487 (609)
.+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++. .. .++ ...+..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444445555555555555555554332 223445555555555556666655555554 11 112 445666
Q ss_pred HHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007288 488 LLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527 (609)
Q Consensus 488 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 527 (609)
+..++...|++++|...++++++..| ++.....+..+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 66777777788888888887777777 4555555555443
No 178
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.06 E-value=2.3e-05 Score=76.73 Aligned_cols=90 Identities=6% Similarity=-0.100 Sum_probs=77.9
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007288 449 NKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 526 (609)
+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..+++++++.|++...+..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4567888889999999999999999887 5555 4667888889999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHH
Q 007288 527 AAEGKWEEFAKF 538 (609)
Q Consensus 527 ~~~g~~~~A~~~ 538 (609)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 998888877653
No 179
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.06 E-value=4.3e-05 Score=73.83 Aligned_cols=126 Identities=9% Similarity=-0.020 Sum_probs=81.4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 007288 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD----------------RIVFMAVLTACSHAGLVDEGLKYFKSMNDY 444 (609)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 444 (609)
..|..+...|.+.|++++|+..|++..+. .|+ ...|..+..++.+.|++++|+..+++..+.
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34555556666666666666666666653 222 356777777777777777777777777654
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHH-HHHHHHHh
Q 007288 445 NVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLG-KLAALRVL 509 (609)
Q Consensus 445 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 509 (609)
. +.+...+..+..+|...|++++|+..|++. ...| +...+..+..++...|+.++| ...+++++
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 235667777777777777777777777766 3334 345666666777777777766 33555544
No 180
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.04 E-value=1.8e-05 Score=63.44 Aligned_cols=94 Identities=12% Similarity=0.020 Sum_probs=52.3
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCCh
Q 007288 421 VLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLP 498 (609)
Q Consensus 421 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 498 (609)
+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..+++. ...| +...+..+..++...|++
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3444555666666666666664433 124555555666666666666666666555 3333 344555566666666667
Q ss_pred HHHHHHHHHHhccCCCC
Q 007288 499 NLGKLAALRVLDLKPNM 515 (609)
Q Consensus 499 ~~a~~~~~~~~~~~p~~ 515 (609)
++|+..++++++.+|++
T Consensus 102 ~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 102 NAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhCcCC
Confidence 77777777776666643
No 181
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.04 E-value=1e-05 Score=78.27 Aligned_cols=148 Identities=9% Similarity=-0.075 Sum_probs=76.6
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHH
Q 007288 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLL 460 (609)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 460 (609)
..+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 34566666777778888888888877763 344332 223333333332221 13677788888
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHH-hcCChHHHHH
Q 007288 461 GRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA-AEGKWEEFAK 537 (609)
Q Consensus 461 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A~~ 537 (609)
.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|++...+..+..+.. ..+..+.+..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999998888877 3344 56778888888999999999999999999999988888888877743 4566777888
Q ss_pred HHHHHHhCCC
Q 007288 538 FRKIMRGMGS 547 (609)
Q Consensus 538 ~~~~m~~~~~ 547 (609)
+|.+|.+...
T Consensus 321 ~~~~~l~~~p 330 (338)
T 2if4_A 321 MYKGIFKGKD 330 (338)
T ss_dssp ----------
T ss_pred HHHHhhCCCC
Confidence 8888776543
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.04 E-value=6.7e-05 Score=60.60 Aligned_cols=100 Identities=11% Similarity=-0.021 Sum_probs=61.6
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhcCCCCCh---hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HhhHHHHHHHH
Q 007288 421 VLTACSHAGLVDEGLKYFKSMNDYNVNPNK---EIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD----ESVWGPLLGAC 492 (609)
Q Consensus 421 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~ 492 (609)
+...+...|++++|...|+.+.+.... +. ..+..+..++.+.|++++|+..+++. ...|+ ...+..+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 344455666666666666666443321 22 35555666667777777777766665 22232 34456666777
Q ss_pred HhCCChHHHHHHHHHHhccCCCCcchHHH
Q 007288 493 KEHRLPNLGKLAALRVLDLKPNMMGTYII 521 (609)
Q Consensus 493 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 521 (609)
...|++++|...++++++..|++......
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~a 115 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDAARVA 115 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCChHHHHH
Confidence 78888888888888888888865544333
No 183
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.99 E-value=0.0012 Score=62.40 Aligned_cols=219 Identities=11% Similarity=0.080 Sum_probs=152.7
Q ss_pred hhccH-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC----------HHHHHHHHHhcCC---CCcchHHHHHHHHH
Q 007288 326 TLAAL-SCGQQVHAGIVRRGLDGNLALANALIDMYAKCGN----------ISDSQKIFSEMSD---RDLVTWTSMMIGYG 391 (609)
Q Consensus 326 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~~~ 391 (609)
+.|.+ ++|..+...+...+ +-+..+++.--.++...|. +++++.+++.+.. .+..+|+.-...+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 34443 46788888887654 2233344433333333232 6778888888763 46678888877777
Q ss_pred hcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc-----
Q 007288 392 AHG--HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL-VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA----- 463 (609)
Q Consensus 392 ~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 463 (609)
..+ .+++++.++.++.+.. +-|..+|+.-...+...|. ++++++.++.+.+.++. |...|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC-
T ss_pred ccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccc
Confidence 777 4899999999999864 3366777777777777887 68999999999876643 777777766666555
Q ss_pred ---------CCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhC-----------CChHHHHHHHHHHhccCCCCcchHHH
Q 007288 464 ---------GRVKEAYELIKSM-PFKP-DESVWGPLLGACKEH-----------RLPNLGKLAALRVLDLKPNMMGTYII 521 (609)
Q Consensus 464 ---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~~~~~~ 521 (609)
+.++++++.+.+. ...| |...|+-+-..+.+. +.++++++.+++++++.|++.-.+..
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~ 277 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLT 277 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHH
Confidence 4578888888777 3344 667777666555554 45789999999999999987544444
Q ss_pred HHHH---HHhcCChHHHHHHHHHHHhCCC
Q 007288 522 LSNI---YAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 522 l~~~---~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
++.. ....|..+++...+.++++-++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 278 IILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp HHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 3332 2246888899999999987433
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.96 E-value=1.9e-05 Score=67.12 Aligned_cols=76 Identities=12% Similarity=-0.027 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCc-chHHHHHHH
Q 007288 450 KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMM-GTYIILSNI 525 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 525 (609)
...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++++++|++. .....+..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 457777888888899999998888877 3344 466788888999999999999999999999999776 334444333
No 185
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.95 E-value=0.00032 Score=70.31 Aligned_cols=188 Identities=7% Similarity=0.002 Sum_probs=83.0
Q ss_pred HHHHhCC-chHHHHHHHHhHHCCCCCCH----------------HhHHHHHHHHHhhccHHHHHHHHHHHHHhCC-CCch
Q 007288 288 AGYEKSG-SSECLNMFSKMKSERFSPNC----------------FTFTSIIAACATLAALSCGQQVHAGIVRRGL-DGNL 349 (609)
Q Consensus 288 ~~~~~~~-~~~a~~~~~~m~~~~~~p~~----------------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~ 349 (609)
..+.+.| +++|++.|.+..+....... ..+..+...|...|++++|...+..+.+.-. .++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 3455556 66677766666654321110 1244455555556666666555555443110 0111
Q ss_pred ----hHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----cchHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--C
Q 007288 350 ----ALANALIDMYAKCGNISDSQKIFSEMSD-----RD----LVTWTSMMIGYGAHGHGKEAIELFDEMVKS--GV--R 412 (609)
Q Consensus 350 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~--~ 412 (609)
.+.+.+...+...|+++.|..+++.... .+ ..++..+...|...|++++|..++++.... +. +
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1122222233334555555555544331 01 123444555555555555555555554431 11 1
Q ss_pred CC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhc--CCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHh
Q 007288 413 PD-RIVFMAVLTACSHAGLVDEGLKYFKSMNDY--NVNPN----KEIYGCVVDLLGRAGRVKEAYELIKS 475 (609)
Q Consensus 413 p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 475 (609)
+. ..++..++..|...|++++|..+++..... .+..+ ...+..+...+...|++++|...|.+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 11 124445555555555555555555544211 11101 12334444444555555555554444
No 186
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.93 E-value=0.00039 Score=72.00 Aligned_cols=169 Identities=8% Similarity=-0.040 Sum_probs=133.0
Q ss_pred CHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-
Q 007288 364 NISDSQKIFSEMSD--R-DLVTWTSMMIGYGAHGH----------GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG- 429 (609)
Q Consensus 364 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~- 429 (609)
.-++|.+.++.+.. | +...|+.--.++...|+ ++++++.++++.+.. +-+..+|..-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 34567777777763 3 44567666666666666 899999999999853 335668888888888888
Q ss_pred -CHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcC-CHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhC----------
Q 007288 430 -LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG-RVKEAYELIKSM-PFKP-DESVWGPLLGACKEH---------- 495 (609)
Q Consensus 430 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---------- 495 (609)
+++++++.++++.+.... +..+|+.-..++.+.| .++++++.++++ ...| +...|+....++.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 779999999999776643 7888888888888888 899999999888 4455 667787777665552
Q ss_pred ----CChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHH
Q 007288 496 ----RLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEE 534 (609)
Q Consensus 496 ----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 534 (609)
+.++++.+.+.+++..+|++..+|..+..++.+.+++++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557899999999999999999999999999999988655
No 187
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.93 E-value=6.8e-05 Score=66.10 Aligned_cols=95 Identities=15% Similarity=-0.057 Sum_probs=75.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-----------------HhhHHHHHHHHHhCCChHHHHHHHHHHhccCC
Q 007288 452 IYGCVVDLLGRAGRVKEAYELIKSM-PFKPD-----------------ESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 513 (609)
.+..+...+.+.|++++|++.|++. ...|+ ...|..+..++...|++++|+..+++++++.|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 3444555555666666666666554 11111 26777788899999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 514 NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 514 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
++...+..++.+|...|++++|...+++..+..
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999998743
No 188
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.91 E-value=2.2e-05 Score=65.00 Aligned_cols=72 Identities=11% Similarity=0.008 Sum_probs=52.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-C-------CCCC-HhhH----HHHHHHHHhCCChHHHHHHHHHHhccCCCCcch
Q 007288 452 IYGCVVDLLGRAGRVKEAYELIKSM-P-------FKPD-ESVW----GPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~-~-------~~p~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 518 (609)
.|..+..++.+.|++++|+..+++. . +.|+ ...| .....++...|++++|+..|++++++.|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5666666666666666666666554 3 3775 4567 788899999999999999999999999977665
Q ss_pred HHHHH
Q 007288 519 YIILS 523 (609)
Q Consensus 519 ~~~l~ 523 (609)
+..+.
T Consensus 139 ~~~~~ 143 (159)
T 2hr2_A 139 TPGKE 143 (159)
T ss_dssp CTTHH
T ss_pred HHHHH
Confidence 54443
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.87 E-value=1.1e-05 Score=64.23 Aligned_cols=90 Identities=11% Similarity=0.048 Sum_probs=51.1
Q ss_pred cCCHHHHHHHHHHhhhcC--CCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHH
Q 007288 428 AGLVDEGLKYFKSMNDYN--VNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKL 503 (609)
Q Consensus 428 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 503 (609)
.|++++|+..|++..+.+ -+.+...+..+..+|...|++++|++.+++. ...| +...+..+..++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 355556666666665432 1223445556666666666666666666665 2223 34555556666777777777777
Q ss_pred HHHHHhccCCCCcc
Q 007288 504 AALRVLDLKPNMMG 517 (609)
Q Consensus 504 ~~~~~~~~~p~~~~ 517 (609)
.++++++..|+++.
T Consensus 83 ~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 83 LLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHCCCHH
T ss_pred HHHHHHHhCCCcHH
Confidence 77777777665544
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.87 E-value=9.9e-05 Score=74.52 Aligned_cols=122 Identities=10% Similarity=-0.039 Sum_probs=85.8
Q ss_pred HhccCCHHHHHHHHHHhhhc---CCCC----ChhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HhhHHH
Q 007288 425 CSHAGLVDEGLKYFKSMNDY---NVNP----NKEIYGCVVDLLGRAGRVKEAYELIKSM---------PFKPD-ESVWGP 487 (609)
Q Consensus 425 ~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ 487 (609)
+...|++++|+.++++..+. -+.+ ...+++.|..+|...|++++|+.++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777776665221 1111 2456777777777778888777777665 23343 346777
Q ss_pred HHHHHHhCCChHHHHHHHHHHhc-----cCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 488 LLGACKEHRLPNLGKLAALRVLD-----LKPNMMG---TYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 488 l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
|...|..+|++++|+.+++++++ ++|+.+. ....+..++...|++++|..++.++++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888889999999988888876 4665544 44568888889999999999999998743
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.87 E-value=4.3e-05 Score=73.82 Aligned_cols=151 Identities=9% Similarity=-0.006 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 007288 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429 (609)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 429 (609)
..+..+...+.+.|++++|...|+...+-+.... .+...++..++...+. ...|..+..++.+.|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~g 244 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKLK 244 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHcC
Confidence 4567788889999999999999998763221111 1222333344333221 136778888899999
Q ss_pred CHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHh-hHHHHHHH-HHhCCChHHHHHHHH
Q 007288 430 LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDES-VWGPLLGA-CKEHRLPNLGKLAAL 506 (609)
Q Consensus 430 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~-~~~~~~~~~a~~~~~ 506 (609)
++++|+..+++..+.. +.+...|..+..+|...|++++|+..|++. .+.|+.. .+..+... ....+..+.+...++
T Consensus 245 ~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~ 323 (338)
T 2if4_A 245 RYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYK 323 (338)
T ss_dssp CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987654 336778888999999999999999999988 5566543 34444444 334567778888999
Q ss_pred HHhccCCCCc
Q 007288 507 RVLDLKPNMM 516 (609)
Q Consensus 507 ~~~~~~p~~~ 516 (609)
++++..|.++
T Consensus 324 ~~l~~~p~~~ 333 (338)
T 2if4_A 324 GIFKGKDEGG 333 (338)
T ss_dssp ----------
T ss_pred HhhCCCCCCC
Confidence 9999888553
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.83 E-value=4.9e-05 Score=64.05 Aligned_cols=129 Identities=11% Similarity=0.007 Sum_probs=65.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhhhcC----CCC-ChhH
Q 007288 383 WTSMMIGYGAHGHGKEAIELFDEMVKSGV-RPD----RIVFMAVLTACSHAGLVDEGLKYFKSMNDYN----VNP-NKEI 452 (609)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~ 452 (609)
+..+...+...|++++|+..+++..+... .++ ..++..+...+...|++++|...+++..+.. ..+ ....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 33444444455555555555554443100 011 1244555555556666666666655542211 000 1334
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-------CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhcc
Q 007288 453 YGCVVDLLGRAGRVKEAYELIKSM-------PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDL 511 (609)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 511 (609)
+..+...+...|++++|.+.+++. +..+ ....+..+...+...|++++|...+++++++
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 555556666666666666666554 1101 1234555556677777777777777777654
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.83 E-value=7e-06 Score=64.48 Aligned_cols=92 Identities=12% Similarity=-0.091 Sum_probs=70.4
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC------cchHH
Q 007288 449 NKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM------MGTYI 520 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 520 (609)
+...+..+...+.+.|++++|++.+++. ...| +...|..+..++...|++++|+..+++++++.|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4456677778888888888888888776 3334 56677778888999999999999999999999977 66777
Q ss_pred HHHHHHHhcCChHHHHHHHH
Q 007288 521 ILSNIYAAEGKWEEFAKFRK 540 (609)
Q Consensus 521 ~l~~~~~~~g~~~~A~~~~~ 540 (609)
.++.++...|++++|...++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 78888877777766655443
No 194
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.83 E-value=7.1e-05 Score=57.45 Aligned_cols=65 Identities=14% Similarity=0.118 Sum_probs=60.2
Q ss_pred CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 481 DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 481 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
+...|..+..++...|++++|+..++++++.+|+++..|..++.+|...|++++|+..+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56678888899999999999999999999999999999999999999999999999999998763
No 195
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.76 E-value=7.2e-05 Score=75.63 Aligned_cols=66 Identities=8% Similarity=-0.122 Sum_probs=61.1
Q ss_pred HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 482 ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 482 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
...|..+..++.+.|++++|+..++++++++|++...|..++.+|...|++++|+..|++..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 467888889999999999999999999999999999999999999999999999999999988544
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.69 E-value=0.00015 Score=54.09 Aligned_cols=81 Identities=20% Similarity=0.193 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007288 450 KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 527 (609)
...+..+...+...|++++|+..+++. ...| +...+..+..++...|++++|...++++++.+|.+...+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 445556666677777777777777665 2223 45566677777888888888888888888888877778887777776
Q ss_pred hcC
Q 007288 528 AEG 530 (609)
Q Consensus 528 ~~g 530 (609)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 544
No 197
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.68 E-value=1.7e-05 Score=65.52 Aligned_cols=50 Identities=10% Similarity=0.036 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC-----------ChHHHHHHHHHHHhCCC
Q 007288 498 PNLGKLAALRVLDLKPNMMGTYIILSNIYAAEG-----------KWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 498 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~m~~~~~ 547 (609)
+++|+..++++++++|++..+|..++.+|.+.| ++++|++.|++..+.++
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 679999999999999999999999999999875 89999999999988544
No 198
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.66 E-value=0.00013 Score=71.34 Aligned_cols=114 Identities=8% Similarity=-0.008 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHhhHHHHHHHHH
Q 007288 415 RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKP-DESVWGPLLGACK 493 (609)
Q Consensus 415 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 493 (609)
...+..+...+.+.|++++|+..|++..+.- +.. ......+++.+ ..| +...|..+..++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~~------~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGAK------LQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHGG------GHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHHH------HHHHHHHHHHHHHHHHH
Confidence 3456677777788888888888887775421 000 00111111111 222 4567788889999
Q ss_pred hCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 494 EHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 494 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
+.|++++|+..++++++++|++...|..++.+|...|++++|+..+++..+..
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999998743
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.64 E-value=0.00022 Score=56.28 Aligned_cols=77 Identities=13% Similarity=0.037 Sum_probs=63.4
Q ss_pred HHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 469 AYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 469 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
|++.+++. ...| +...+..+..++...|++++|+..++++++.+|.+...+..++.+|...|++++|...+++..+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45555544 3344 56677778888999999999999999999999988899999999999999999999999988763
No 200
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.63 E-value=0.00031 Score=52.75 Aligned_cols=69 Identities=9% Similarity=-0.020 Sum_probs=59.5
Q ss_pred CCHhhHHHHHHHHHhCCC---hHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 007288 480 PDESVWGPLLGACKEHRL---PNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSK 548 (609)
Q Consensus 480 p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 548 (609)
++...+..+..++...++ .++|...++++++.+|++......++..+.+.|++++|+..|+++.+..+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 456667777777654444 689999999999999999999999999999999999999999999987664
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.57 E-value=0.00064 Score=55.66 Aligned_cols=111 Identities=10% Similarity=-0.035 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----CCChHHHHHHH
Q 007288 430 LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKE----HRLPNLGKLAA 505 (609)
Q Consensus 430 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~ 505 (609)
++++|..+|++..+.| .++ .. |...|...+..++|++.|++.-..-+...+..|...|.. .+++++|...+
T Consensus 10 d~~~A~~~~~~aa~~g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 3444555555544433 111 11 444444444455555555544212344444555555554 56666777777
Q ss_pred HHHhccCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 007288 506 LRVLDLKPNMMGTYIILSNIYAA----EGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 506 ~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 547 (609)
+++.+. .++..+..|+.+|.. .+++++|..++++..+.|.
T Consensus 85 ~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 85 SKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 766655 346677777777777 6777777777777777654
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.00023 Score=55.47 Aligned_cols=67 Identities=7% Similarity=-0.102 Sum_probs=61.6
Q ss_pred CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 481 DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 481 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|+..+++..+..+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 4567778889999999999999999999999999999999999999999999999999999987544
No 203
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.47 E-value=5.6e-05 Score=73.03 Aligned_cols=234 Identities=9% Similarity=0.105 Sum_probs=158.8
Q ss_pred hhHHhHHHHHHHccCChhHHHHhhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCC
Q 007288 46 SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGM 125 (609)
Q Consensus 46 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 125 (609)
+.+|+.|..++.+.|++.+|++.|-+. .|+..|..+|.+..+.|++++-+..+...++..- ++..=+.|+-+|++.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTS
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhh
Confidence 457999999999999999998877554 4566789999999999999999999877666533 334446888899999
Q ss_pred CChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCC------------------------CChhh
Q 007288 126 KSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW------------------------KNDVS 181 (609)
Q Consensus 126 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~------------------------~~~~~ 181 (609)
+++.+-++++ -.|+..-...+.+-|...| .++.|.-+|..+.. .++.+
T Consensus 130 ~rL~elEefl-------~~~N~A~iq~VGDrcf~e~-lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 130 NRLAELEEFI-------NGPNNAHIQQVGDRCYDEK-MYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp CSSSTTTSTT-------SCCSSSCTHHHHHHHHHSC-CSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred CcHHHHHHHH-------cCCCcccHHHHHHHHHHcc-CHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 8876544332 2356666667777777777 88888887776652 37788
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 007288 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR 261 (609)
Q Consensus 182 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 261 (609)
|-.+-.+|...+.+.-|.-.--.++- .......++..|-..|.+++-..+++.-.... ......|+-|.-.|++
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsK 275 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHh
Confidence 99999999999988877655444332 11222334555677788887777776655221 3455667777767766
Q ss_pred cCCHHHHHHHHHhcCC----C-------ChhHHHHHHHHHHhCC-chHH
Q 007288 262 FDCLSDANQYFDEMTE----K-------DLITWNTIIAGYEKSG-SSEC 298 (609)
Q Consensus 262 ~g~~~~A~~~~~~~~~----~-------~~~~~~~li~~~~~~~-~~~a 298 (609)
- ++++..+.++.... | ....|..++-.|.+-. ++.|
T Consensus 276 Y-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA 323 (624)
T 3lvg_A 276 F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 323 (624)
T ss_dssp S-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHH
T ss_pred c-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHH
Confidence 4 44555554444322 1 3345666666666555 5544
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.45 E-value=0.00076 Score=68.07 Aligned_cols=121 Identities=15% Similarity=0.063 Sum_probs=73.3
Q ss_pred HHhcCCHHHHHHHHHHHHHC---CCCC---CH-HHHHHHHHHHhccCCHHHHHHHHHHhhh-----cCC-CC-ChhHHHH
Q 007288 390 YGAHGHGKEAIELFDEMVKS---GVRP---DR-IVFMAVLTACSHAGLVDEGLKYFKSMND-----YNV-NP-NKEIYGC 455 (609)
Q Consensus 390 ~~~~g~~~~A~~~~~~m~~~---g~~p---~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~-~~-~~~~~~~ 455 (609)
+...|++++|+.++++.++. -+.| +. .+++.|...|...|++++|..++++..+ .|. .| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44566777777766666541 1122 22 3667777777777777777777766522 121 11 2445677
Q ss_pred HHHHHhhcCCHHHHHHHHHhC---------CCCCCHh-hHHHHHHHHHhCCChHHHHHHHHHHhc
Q 007288 456 VVDLLGRAGRVKEAYELIKSM---------PFKPDES-VWGPLLGACKEHRLPNLGKLAALRVLD 510 (609)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 510 (609)
|...|...|++++|+.++++. +..|+.. +...+-.++...+.+++|+.++.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777888888777777665 2233333 233344666677788888888877754
No 205
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.40 E-value=0.0035 Score=64.84 Aligned_cols=152 Identities=11% Similarity=0.032 Sum_probs=123.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCC----------HHHHHHHHHHhhhcCCCCChhHHHHHHHHHh
Q 007288 393 HGHGKEAIELFDEMVKSGVRPDR-IVFMAVLTACSHAGL----------VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461 (609)
Q Consensus 393 ~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 461 (609)
....++|++.++++... .|+. ..|+.--..+...|+ ++++++.++.+.+.+. -+..+|+.-..++.
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~ 118 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLS 118 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 34457889999999984 5554 466665566666666 8999999999977664 37888888888899
Q ss_pred hcC--CHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCC-ChHHHHHHHHHHhccCCCCcchHHHHHHHHHhc-------
Q 007288 462 RAG--RVKEAYELIKSM-PFKP-DESVWGPLLGACKEHR-LPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE------- 529 (609)
Q Consensus 462 ~~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 529 (609)
+.| +++++++.++++ ...| +...|+.-..++.+.| .++++.+.++++++.+|.|..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 779999999998 3333 6778888888888888 899999999999999999999999999998874
Q ss_pred -------CChHHHHHHHHHHHhCCC
Q 007288 530 -------GKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 530 -------g~~~~A~~~~~~m~~~~~ 547 (609)
+.++++++++++.....+
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred ccccccHHHHHHHHHHHHHHHhhCC
Confidence 567899999988876433
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.36 E-value=0.0024 Score=52.18 Aligned_cols=112 Identities=9% Similarity=-0.065 Sum_probs=88.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhh----cCCHHHH
Q 007288 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR----AGRVKEA 469 (609)
Q Consensus 394 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 469 (609)
+++++|++.|++..+.| .|+.. |...|...+.+++|.++|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46788999999988887 44444 6666777778888999999887765 66777778888877 7899999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHh----CCChHHHHHHHHHHhccCC
Q 007288 470 YELIKSMPFKPDESVWGPLLGACKE----HRLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 470 ~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p 513 (609)
++.|++.-..-+...+..|...|.. .++.++|...++++.+...
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999887333467777888888888 8899999999999888754
No 207
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.32 E-value=0.00029 Score=70.00 Aligned_cols=115 Identities=10% Similarity=0.075 Sum_probs=80.3
Q ss_pred HHHhhcCCHHHHHHHHHhC------CCCCC----HhhHHHHHHHHHhCCChHHHHHHHHHHhc-----cCCC---CcchH
Q 007288 458 DLLGRAGRVKEAYELIKSM------PFKPD----ESVWGPLLGACKEHRLPNLGKLAALRVLD-----LKPN---MMGTY 519 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~~------~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~---~~~~~ 519 (609)
..+.+.|++++|++++++. -+.|+ ..+++.|..+|...|++++|+.+++++++ +.|+ -...+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3344566667776666554 11222 34666777778888888888888887765 2343 34578
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCcccCceeEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHH
Q 007288 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMN 590 (609)
Q Consensus 520 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 590 (609)
+.|+.+|...|++++|..++++..+--. ..-...||...+.+..+.+...+|+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMR------------------VTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHH------------------HhcCCCChHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999876211 1224579999998888888877775
No 208
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.31 E-value=0.00059 Score=50.76 Aligned_cols=65 Identities=18% Similarity=0.245 Sum_probs=59.6
Q ss_pred HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 482 ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 482 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
...+..+...+...|++++|...++++++..|.+...+..++.+|...|++++|...+++..+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45677778889999999999999999999999999999999999999999999999999998743
No 209
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.27 E-value=0.00021 Score=58.98 Aligned_cols=102 Identities=13% Similarity=0.036 Sum_probs=53.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH----------HHHHHHHHHhhhcCCCCChhHHHHHHHHHh
Q 007288 392 AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLV----------DEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461 (609)
Q Consensus 392 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 461 (609)
+.+.+++|.+.+++..+.. +-+...|..+..++...+++ ++|+..|++..+.+.. +...|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 3445556666666655532 22344555555555554443 3444444444443311 3334444444444
Q ss_pred hcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCc
Q 007288 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMM 516 (609)
Q Consensus 462 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 516 (609)
..|.+ .|+.. ...|++++|+..|+++++++|++.
T Consensus 92 ~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 92 SFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred Hhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCH
Confidence 43332 22221 012689999999999999999654
No 210
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.13 E-value=0.0015 Score=51.32 Aligned_cols=79 Identities=11% Similarity=0.008 Sum_probs=45.9
Q ss_pred HHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhcc
Q 007288 434 GLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDL 511 (609)
Q Consensus 434 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 511 (609)
|+..|++..+.. +.+...+..+...|...|++++|+..+++. ...| +...|..+..++...|++++|...+++++++
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444555554332 224555556666666666666666666555 2223 3445666666677777777777777777666
Q ss_pred CC
Q 007288 512 KP 513 (609)
Q Consensus 512 ~p 513 (609)
.|
T Consensus 83 ~~ 84 (115)
T 2kat_A 83 AQ 84 (115)
T ss_dssp HH
T ss_pred cc
Confidence 65
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.96 E-value=0.0011 Score=65.68 Aligned_cols=82 Identities=10% Similarity=-0.023 Sum_probs=58.1
Q ss_pred cCCHHHHHHHHHhC---------CCCCC-HhhHHHHHHHHHhCCChHHHHHHHHHHhc-----cCCC---CcchHHHHHH
Q 007288 463 AGRVKEAYELIKSM---------PFKPD-ESVWGPLLGACKEHRLPNLGKLAALRVLD-----LKPN---MMGTYIILSN 524 (609)
Q Consensus 463 ~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~---~~~~~~~l~~ 524 (609)
.|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ +.|+ -...|+.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35566666655544 12232 34667777778888888888888887765 3443 3457888999
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 007288 525 IYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 525 ~~~~~g~~~~A~~~~~~m~~ 544 (609)
+|..+|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999998876
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.95 E-value=0.0015 Score=49.56 Aligned_cols=54 Identities=15% Similarity=0.144 Sum_probs=29.3
Q ss_pred HHHhCCChHHHHHHHHHHhccCCCCcc-hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 491 ACKEHRLPNLGKLAALRVLDLKPNMMG-TYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 491 ~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
.+...|++++|...++++++..|++.. .+..++.+|...|++++|+..+++..+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555555555555555555555 555555555555555555555555544
No 213
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.88 E-value=0.0023 Score=48.81 Aligned_cols=65 Identities=6% Similarity=-0.058 Sum_probs=38.7
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCC
Q 007288 449 NKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 513 (609)
+...+..+...|...|++++|+..|++. ...| +...|..+..++...|++++|...+++++++.|
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 3445555666666666666666666655 2223 344556666666666666666666666666544
No 214
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.82 E-value=0.0006 Score=66.08 Aligned_cols=225 Identities=10% Similarity=0.105 Sum_probs=157.7
Q ss_pred ChhHHHHhhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHH
Q 007288 61 LIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIK 140 (609)
Q Consensus 61 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 140 (609)
++++|.+.-++...| ..|..+..+....+...+|++.|-+. -|...|..++.++.+.|.+++-..++...++
T Consensus 40 ~ldRa~eyA~~~n~p--~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk 111 (624)
T 3lvg_A 40 NLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARK 111 (624)
T ss_dssp CSTTTTTSSSSCCCC--CCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTST
T ss_pred ccHHHHHHHHHhCCc--cHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 344444444444444 46999999999999999998876432 2778899999999999999999998887776
Q ss_pred hCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCC-----------
Q 007288 141 EGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG----------- 209 (609)
Q Consensus 141 ~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----------- 209 (609)
.. .++.+=+.|+-+|++.+ +..+-++.+ ..+|......+.+-|...|.++.|.-+|..+....
T Consensus 112 ~~--ke~~IDteLi~ayAk~~-rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~ 185 (624)
T 3lvg_A 112 KA--RESYVETELIFALAKTN-RLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGE 185 (624)
T ss_dssp TC--CSTTTTHHHHHHHHTSC-SSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSG
T ss_pred Hh--cccccHHHHHHHHHhhC-cHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 53 35567789999999998 655433222 23566666777777777887777776665432211
Q ss_pred ---------CCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC---C
Q 007288 210 ---------VEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT---E 277 (609)
Q Consensus 210 ---------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~ 277 (609)
-.-+..||..+-.+|...+.+..|...--.++-. +.-...++..|-+.|.+++-+.+++.-. .
T Consensus 186 yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglEr 260 (624)
T 3lvg_A 186 YQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLER 260 (624)
T ss_dssp GGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTT
T ss_pred HHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCc
Confidence 1236778999999999999888775443333322 1223346777888999999888888754 3
Q ss_pred CChhHHHHHHHHHHhCCchHHHHHHHH
Q 007288 278 KDLITWNTIIAGYEKSGSSECLNMFSK 304 (609)
Q Consensus 278 ~~~~~~~~li~~~~~~~~~~a~~~~~~ 304 (609)
.....|+.|.-.|++-..++..+.++.
T Consensus 261 AHmGmFTELaILYsKY~PeKlmEHlkl 287 (624)
T 3lvg_A 261 AHMGMFTELAILYSKFKPQKMREHLEL 287 (624)
T ss_dssp CCHHHHHHHHHHHHSSCTTHHHHHHTT
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 466778888888888776666655543
No 215
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.80 E-value=0.13 Score=40.35 Aligned_cols=141 Identities=10% Similarity=-0.007 Sum_probs=105.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 007288 390 YGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469 (609)
Q Consensus 390 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 469 (609)
+.-.|..++..++..+.... .+..-|+.+|--....-+-+-..+.++..-+ -.| ...+|+....
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD----------is~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcC----------cHhhhcHHHH
Confidence 44568888888888888763 3566777777666666666666666665522 112 1356777777
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 007288 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSK 548 (609)
Q Consensus 470 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 548 (609)
..-+-.++. +.......+.....+|+-+.-..++..++.-.|.++....-++.+|.+.|+..+|.+++.+..++|++
T Consensus 81 i~C~~~~n~--~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcc--hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 776666642 55566777888999999999999999977766668999999999999999999999999999999985
No 216
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.72 E-value=0.028 Score=51.19 Aligned_cols=87 Identities=10% Similarity=0.044 Sum_probs=72.2
Q ss_pred HHHHHHHHHhC-CCCCC---HhhHHHHHHHHHh-----CCChHHHHHHHHHHhccCCCC-cchHHHHHHHHHhc-CChHH
Q 007288 466 VKEAYELIKSM-PFKPD---ESVWGPLLGACKE-----HRLPNLGKLAALRVLDLKPNM-MGTYIILSNIYAAE-GKWEE 534 (609)
Q Consensus 466 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 534 (609)
...|...+++. .+.|+ ...|..|...|.+ .|+.++|.+.|+++++++|+. ...+...++.++.. |++++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45566666665 55666 5678888888888 599999999999999999964 99999999999985 99999
Q ss_pred HHHHHHHHHhCCCcccCc
Q 007288 535 FAKFRKIMRGMGSKKEVG 552 (609)
Q Consensus 535 A~~~~~~m~~~~~~~~~~ 552 (609)
|.+.+++.....+...|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999999977765454
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.72 E-value=0.008 Score=59.52 Aligned_cols=91 Identities=9% Similarity=-0.040 Sum_probs=57.9
Q ss_pred cCCHHHHHHHHHHhhh---cCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HhhHHHHHH
Q 007288 428 AGLVDEGLKYFKSMND---YNVNPN----KEIYGCVVDLLGRAGRVKEAYELIKSM---------PFKPD-ESVWGPLLG 490 (609)
Q Consensus 428 ~~~~~~a~~~~~~~~~---~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~ 490 (609)
.|++++|+.++++..+ .-+.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4566777766666522 111121 355667777777777777777777665 23343 346777778
Q ss_pred HHHhCCChHHHHHHHHHHhc-----cCCCCcch
Q 007288 491 ACKEHRLPNLGKLAALRVLD-----LKPNMMGT 518 (609)
Q Consensus 491 ~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~ 518 (609)
.|..+|++++|+.+++++++ ++|+.+.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 88888888888888888766 46655443
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.70 E-value=0.011 Score=48.23 Aligned_cols=81 Identities=14% Similarity=-0.020 Sum_probs=35.0
Q ss_pred HHHHHHHHhhhcCCCCChhHHHHHHHHHhhcC---CHHHHHHHHHhC-CCC-C--CHhhHHHHHHHHHhCCChHHHHHHH
Q 007288 433 EGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG---RVKEAYELIKSM-PFK-P--DESVWGPLLGACKEHRLPNLGKLAA 505 (609)
Q Consensus 433 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~a~~~~ 505 (609)
.+.+.|.+..+.+. ++..+.-.+..++++.+ +.++++.++++. ... | +...+..|.-++.+.|++++|.+.+
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 34444444433332 34444444555555554 333455544444 111 2 1223333334444555555555555
Q ss_pred HHHhccCCC
Q 007288 506 LRVLDLKPN 514 (609)
Q Consensus 506 ~~~~~~~p~ 514 (609)
+.+++++|+
T Consensus 95 ~~lL~ieP~ 103 (152)
T 1pc2_A 95 RGLLQTEPQ 103 (152)
T ss_dssp HHHHHHCTT
T ss_pred HHHHhcCCC
Confidence 555555553
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.61 E-value=0.016 Score=57.36 Aligned_cols=98 Identities=8% Similarity=-0.112 Sum_probs=62.7
Q ss_pred HHHhccCCHHHHHHHHHHhhhc---CCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HhhH
Q 007288 423 TACSHAGLVDEGLKYFKSMNDY---NVNPN----KEIYGCVVDLLGRAGRVKEAYELIKSM---------PFKPD-ESVW 485 (609)
Q Consensus 423 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~ 485 (609)
..+.+.|++++|+.++++..+. -+.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3344566777777777666321 11121 346677777777777777777777665 23343 3466
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHhc-----cCCCCcchHH
Q 007288 486 GPLLGACKEHRLPNLGKLAALRVLD-----LKPNMMGTYI 520 (609)
Q Consensus 486 ~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~ 520 (609)
+.|...|..+|++++|+.+++++++ ++|+.+.+-.
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 7777888888888888888888766 4676554433
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.57 E-value=0.009 Score=45.04 Aligned_cols=79 Identities=10% Similarity=0.074 Sum_probs=56.2
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHh-hHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCh
Q 007288 456 VVDLLGRAGRVKEAYELIKSM-PFKP-DES-VWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKW 532 (609)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 532 (609)
....+.+.|++++|++.+++. ...| +.. .|..+..++...|++++|...++++++++|++...+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 445667788888888888776 3344 345 67777788888899999999999999999987766632 344
Q ss_pred HHHHHHHHHH
Q 007288 533 EEFAKFRKIM 542 (609)
Q Consensus 533 ~~A~~~~~~m 542 (609)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.55 E-value=0.033 Score=52.90 Aligned_cols=134 Identities=16% Similarity=0.053 Sum_probs=58.3
Q ss_pred CCcchHHHHHHHHH--hc---CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcc---C--CHHHH---HHHHHHhhh
Q 007288 378 RDLVTWTSMMIGYG--AH---GHGKEAIELFDEMVKSGVRPDR-IVFMAVLTACSHA---G--LVDEG---LKYFKSMND 443 (609)
Q Consensus 378 ~~~~~~~~li~~~~--~~---g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~---~--~~~~a---~~~~~~~~~ 443 (609)
.+...|...+.+.. .. .+..+|..+|++.++. .|+. ..+..+..++... + ..... ...++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 35556666655432 22 2346788888888873 5653 3444444333300 0 00000 001111000
Q ss_pred -cCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCC
Q 007288 444 -YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 444 -~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 513 (609)
...+.+..+|..+...+...|++++|...++++ ...|+...|..+...+.-.|++++|.+.+++++.++|
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 011223444444444444445555555555444 2234444443444444455555555555555555555
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.32 E-value=0.031 Score=53.12 Aligned_cols=135 Identities=10% Similarity=0.043 Sum_probs=92.3
Q ss_pred CCCCHHHHHHHHHHHh--cc---CCHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHh---hcC-----C---HHHHHHHH
Q 007288 411 VRPDRIVFMAVLTACS--HA---GLVDEGLKYFKSMNDYNVNPN-KEIYGCVVDLLG---RAG-----R---VKEAYELI 473 (609)
Q Consensus 411 ~~p~~~~~~~ll~~~~--~~---~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~---~~g-----~---~~~A~~~~ 473 (609)
.+.+...|...+++.. .. .+..+|..+|++..+.. |+ ...|..+..+|. ..+ . ...+.+..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 3455667777776543 33 34578999999997754 44 334443333332 111 1 11233322
Q ss_pred HhCC-CCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 007288 474 KSMP-FKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSK 548 (609)
Q Consensus 474 ~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 548 (609)
..+. ...+..++..+...+...|++++|...+++++.++| +...|..++.++.-.|++++|.+.+++....++.
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 3332 234677787777777778999999999999999998 5778889999999999999999999999886553
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.29 E-value=0.44 Score=51.73 Aligned_cols=152 Identities=11% Similarity=0.133 Sum_probs=87.5
Q ss_pred HHHHhcCChhhHHH-HHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 007288 187 TGYAHSGNGYGGLG-VFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCL 265 (609)
Q Consensus 187 ~~~~~~g~~~~a~~-~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 265 (609)
......+++++|.+ ++.. ++ +...+..++..+.+.|..+.|.++.+.. ..-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCH
Confidence 33445677777765 4311 11 1222355666667777777776654321 1123445677888
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhC
Q 007288 266 SDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344 (609)
Q Consensus 266 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 344 (609)
++|.++.+.+. +...|..+...+.+.+ .+.|.+.|.++.. |..+...+...++.+....+-+.....|
T Consensus 669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 88888877664 4567888888888888 8888888877653 3344444445666665555544444433
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 007288 345 LDGNLALANALIDMYAKCGNISDSQKIFS 373 (609)
Q Consensus 345 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 373 (609)
. ++.-..+|.+.|++++|.+++.
T Consensus 738 ~------~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 738 K------FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp C------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred c------hHHHHHHHHHcCCHHHHHHHHH
Confidence 1 2333444555666666655443
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.11 E-value=0.31 Score=52.95 Aligned_cols=102 Identities=15% Similarity=0.146 Sum_probs=56.5
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 007288 358 MYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY 437 (609)
Q Consensus 358 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 437 (609)
.....|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 3455677777777766553 446777777777777777777777776542 22333334445555554444
Q ss_pred HHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007288 438 FKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476 (609)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 476 (609)
-+.....|- ++.-..+|.+.|++++|++++.++
T Consensus 730 ~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 730 AKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 444333221 122333444556666666555554
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.99 E-value=0.038 Score=42.16 Aligned_cols=71 Identities=13% Similarity=-0.076 Sum_probs=48.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-----C----CCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHH
Q 007288 452 IYGCVVDLLGRAGRVKEAYELIKSM-----P----FKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 522 (609)
-+-.|...+.+.|++..|...|+.. + -.+....+..|..++.+.|+++.|...+++++++.|++..+...+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 3444555555666666665555544 0 123456677888889999999999999999999999876654444
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.86 E-value=0.029 Score=45.66 Aligned_cols=87 Identities=7% Similarity=0.049 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHhhhcCCCC--ChhHHHHHHHHHhhcCCHHHH
Q 007288 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG---LVDEGLKYFKSMNDYNVNP--NKEIYGCVVDLLGRAGRVKEA 469 (609)
Q Consensus 395 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A 469 (609)
....+.+-|.+..+.|. ++..+-..+..++++.+ ++++++.+++...+.+ .| +...+-.|.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 34556666666666553 56666666777777776 5567888888775544 23 244445566677788888888
Q ss_pred HHHHHhC-CCCCCHh
Q 007288 470 YELIKSM-PFKPDES 483 (609)
Q Consensus 470 ~~~~~~~-~~~p~~~ 483 (609)
++.++.+ .+.|+..
T Consensus 91 ~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHHCTTCH
T ss_pred HHHHHHHHhcCCCCH
Confidence 8888777 5556544
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.60 E-value=0.071 Score=39.59 Aligned_cols=67 Identities=10% Similarity=-0.041 Sum_probs=43.7
Q ss_pred CChhHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCCC-HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC
Q 007288 448 PNKEIYGCVVDLLGRAGR---VKEAYELIKSM-PFKPD-ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 448 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
.+...+..+..++...++ .++|..++++. ...|+ ......+...+.+.|++++|+..|+++++.+|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 455666666666654444 57777777766 34443 444555556677778888888888888777775
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.42 E-value=0.6 Score=39.00 Aligned_cols=103 Identities=15% Similarity=0.151 Sum_probs=55.0
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 007288 358 MYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY 437 (609)
Q Consensus 358 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 437 (609)
.....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|++... |..+.-.|...|+.+.-.++
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 344556666666665555 3455666666666666666666666665432 22333334445555554444
Q ss_pred HHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 007288 438 FKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMP 477 (609)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 477 (609)
-+.....| . ++.-...+.-.|+++++.++|.+.+
T Consensus 83 a~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 83 QNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 44333323 1 2333344445566666666666654
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.29 E-value=0.15 Score=39.83 Aligned_cols=27 Identities=11% Similarity=-0.018 Sum_probs=13.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 518 TYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
....|+-++.+.|+|++|.++++.+.+
T Consensus 76 ~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 76 YVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444455555555555555554444
No 230
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.26 E-value=0.14 Score=53.84 Aligned_cols=54 Identities=9% Similarity=-0.044 Sum_probs=50.9
Q ss_pred HHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 007288 490 GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMR 543 (609)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 543 (609)
..|...|+++.|+.+.+++...-|.+..+|..|+.+|...|+|+.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 557889999999999999999999999999999999999999999999998884
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.41 E-value=0.15 Score=38.83 Aligned_cols=65 Identities=11% Similarity=-0.081 Sum_probs=54.7
Q ss_pred CHhhHHHHHHHHHhCCChHHHHHHHHHHhccC-------CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 481 DESVWGPLLGACKEHRLPNLGKLAALRVLDLK-------PNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 481 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
+..-+-.+...+...++++.|...++++++.. +.....+..|+.+|.+.|++++|..++++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34455677888999999999999999998742 345668899999999999999999999999874
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.27 E-value=0.32 Score=38.00 Aligned_cols=88 Identities=13% Similarity=-0.082 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHH---HHHHHHhC-CCC-C--CHhhHHHHHHHHHhCCChHHHHH
Q 007288 431 VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKE---AYELIKSM-PFK-P--DESVWGPLLGACKEHRLPNLGKL 503 (609)
Q Consensus 431 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~a~~ 503 (609)
...+.+-|......|. ++..+--.+..++.++.+... ++.+++++ ... | .......|.-++.+.|+++.|..
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3444555555544343 566666667777777776665 77777766 222 3 22233445577889999999999
Q ss_pred HHHHHhccCCCCcchH
Q 007288 504 AALRVLDLKPNMMGTY 519 (609)
Q Consensus 504 ~~~~~~~~~p~~~~~~ 519 (609)
.++.+++.+|+|..+.
T Consensus 96 ~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHCTTCHHHH
T ss_pred HHHHHHHhCCCCHHHH
Confidence 9999999999765443
No 233
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.23 E-value=5.9 Score=40.93 Aligned_cols=114 Identities=10% Similarity=0.067 Sum_probs=67.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 007288 394 GHGKEAIELFDEMVKSGVRPDRI----VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469 (609)
Q Consensus 394 g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 469 (609)
.+.+.|...+....+.+ ..+.. ....+.......+...++...+....... .+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 37788888888876533 22333 22233333444453556666666653322 2333333334444577999999
Q ss_pred HHHHHhCCCCC-CHhhHHH-HHHHHHhCCChHHHHHHHHHHhc
Q 007288 470 YELIKSMPFKP-DESVWGP-LLGACKEHRLPNLGKLAALRVLD 510 (609)
Q Consensus 470 ~~~~~~~~~~p-~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~ 510 (609)
...|+.|+..+ +..-|.- +..++...|+.++|...++.+.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999885433 2222322 33667788899999988888875
No 234
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.22 E-value=1.6 Score=34.71 Aligned_cols=45 Identities=9% Similarity=0.014 Sum_probs=23.0
Q ss_pred HHHHHHHHHhccCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 500 LGKLAALRVLDLKP-NMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 500 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
+++.+++.+....| ........|+-++.+.|+|++|.++.+.+.+
T Consensus 60 ~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 60 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44445555554444 2233444455555555555555555555554
No 235
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.75 E-value=2.5 Score=38.51 Aligned_cols=113 Identities=14% Similarity=0.148 Sum_probs=66.6
Q ss_pred cCCHHHHHHHHHhcCCCCc--chHHHHHHH-HHhc--C------CHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhc
Q 007288 362 CGNISDSQKIFSEMSDRDL--VTWTSMMIG-YGAH--G------HGKEAIELFDEMVKSGVRPD---RIVFMAVLTACSH 427 (609)
Q Consensus 362 ~g~~~~A~~~~~~~~~~~~--~~~~~li~~-~~~~--g------~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~ 427 (609)
.|+..+-...+..+...++ ..|..++.+ +... | ....|...+++.++ +.|+ ...|..+...|.+
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 3444455555555554333 345555443 2222 2 23456666666666 4565 3466667766766
Q ss_pred c-----CCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc-CCHHHHHHHHHhC
Q 007288 428 A-----GLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA-GRVKEAYELIKSM 476 (609)
Q Consensus 428 ~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~ 476 (609)
. |+.++|.+.|++..+.+..-+..++..+.+.+++. |+.++|.+.+++.
T Consensus 212 vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3 77777777777776655333466666677777764 7777777777766
No 236
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.25 E-value=5.2 Score=37.07 Aligned_cols=168 Identities=10% Similarity=0.027 Sum_probs=95.2
Q ss_pred HHhHHHHHHHccCChhHHHHhhccCCCCCcccHHHHHHHHHcCCChhHHHHH----HHHHHHCCCCCCcchHHHHHHHhh
Q 007288 48 LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTV----FVEMVRNEVNPNAFTLSSVLKACK 123 (609)
Q Consensus 48 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 123 (609)
.|.++..-|.+++++++|++++ ..-...+.+.|+...|-++ .+-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL-----------~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELI-----------SQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHH-----------HHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4555666666666666666653 2233345566777666664 444556788888888877777765
Q ss_pred CCCC-hHHHHHHHHHHHHh----C--CCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhc---C
Q 007288 124 GMKS-LSNAALVHGMAIKE----G--LEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHS---G 193 (609)
Q Consensus 124 ~~~~-~~~a~~~~~~~~~~----~--~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g 193 (609)
.... -..-.++.+.+++. | ..-++.....+...|.+.+ ++.+|+..|-.-...|...+..++.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~-~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGD-FVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTT-CHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcC-CHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 5331 11223444444433 2 2236677788888888888 888888877633323455555555555444 3
Q ss_pred ChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHH
Q 007288 194 NGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIK 242 (609)
Q Consensus 194 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 242 (609)
...++--.+ -..++ -+...|++..|..+++...+
T Consensus 183 ~~~e~dlf~--------------~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDSTVAEFF--------------SRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHHHHHH--------------HHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred CcchHHHHH--------------HHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 332221111 11122 23456777777777776543
No 237
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.09 E-value=2.6 Score=33.15 Aligned_cols=84 Identities=11% Similarity=0.027 Sum_probs=58.2
Q ss_pred cCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007288 362 CGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441 (609)
Q Consensus 362 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 441 (609)
+|++......+-.+. .+...++..+..+...|+-++-.+++..+.. +.+|++.....+..+|.+.|+..+|.+++.++
T Consensus 74 C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 74 CQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp CSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 444444444443333 2334556667778888888888888888644 35777888888888888888888888888888
Q ss_pred hhcCCC
Q 007288 442 NDYNVN 447 (609)
Q Consensus 442 ~~~~~~ 447 (609)
-+.|++
T Consensus 152 C~kG~k 157 (172)
T 1wy6_A 152 CKKGEK 157 (172)
T ss_dssp HHTTCH
T ss_pred HHhhhH
Confidence 777754
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.77 E-value=13 Score=40.25 Aligned_cols=258 Identities=10% Similarity=0.039 Sum_probs=137.7
Q ss_pred HHHccCCchhHHHHHHHHHHhCCCCChh--HHHHHHHHHHhcCCHHHHHHHHHhcCC-CC----------hhHHHHHHHH
Q 007288 223 ACASTGWVSFGKLIHAAVIKHGFGSNLP--VMNSILDMYCRFDCLSDANQYFDEMTE-KD----------LITWNTIIAG 289 (609)
Q Consensus 223 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~----------~~~~~~li~~ 289 (609)
+....|+.+++..++......+-..+.. .-..+.-+....|.-+++..++..... .+ ...-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4567788888877776544321012222 222233334455555566665555332 22 1223344444
Q ss_pred HHhCC--chHHHHHHHHhHHCCCCCCHHhHH--HHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH--HhcC
Q 007288 290 YEKSG--SSECLNMFSKMKSERFSPNCFTFT--SIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMY--AKCG 363 (609)
Q Consensus 290 ~~~~~--~~~a~~~~~~m~~~~~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g 363 (609)
++-.| .+++.+.+..+....- +...... .+...+...|+.+....++..+.+.. +..+...+.-++ .-.|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 55556 5778888877775321 1111111 22223345677788888887776532 333333344433 3678
Q ss_pred CHHHHHHHHHhcCC-CCcc-hHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 007288 364 NISDSQKIFSEMSD-RDLV-TWT---SMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYF 438 (609)
Q Consensus 364 ~~~~A~~~~~~~~~-~~~~-~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 438 (609)
+.+.+..+++.+.. .+.. -|. ++..+|+..|+.....++++.+... ...+......+.-++...|+.+.+.+++
T Consensus 539 ~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 539 RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 87877777777652 3332 233 3445677889987777799888864 2223333333444555566666667777
Q ss_pred HHhhhcCCCCChhHHHHHHHHHhhcCCH-HHHHHHHHhCCCCCCHhhHH
Q 007288 439 KSMNDYNVNPNKEIYGCVVDLLGRAGRV-KEAYELIKSMPFKPDESVWG 486 (609)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~ 486 (609)
+.+.+.+ .|.+..-..+.-+....|.. .++++++..+...+|..+-.
T Consensus 618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq 665 (963)
T 4ady_A 618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQ 665 (963)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHH
T ss_pred HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHH
Confidence 6665433 44444444444444445543 56777777774444444433
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.43 E-value=0.89 Score=36.55 Aligned_cols=60 Identities=8% Similarity=-0.105 Sum_probs=40.2
Q ss_pred cCCHHHHHHHHHhC-CC-CCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHH
Q 007288 463 AGRVKEAYELIKSM-PF-KPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522 (609)
Q Consensus 463 ~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 522 (609)
.++.++|.++|+.+ .. +-=...|-.....-.++|+...|..++.+++++.|.....+...
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a 134 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIA 134 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 36777777777666 11 01155666666777789999999999999999888554444433
No 240
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.30 E-value=4.4 Score=33.82 Aligned_cols=130 Identities=12% Similarity=0.077 Sum_probs=93.2
Q ss_pred HHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHH
Q 007288 322 AACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401 (609)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 401 (609)
......|+++.|.++.+.+ .+...|..|.+...+.|+++-|++.|..... +..+.-.|...|+.++..+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHH
Confidence 3445679999999987765 3677899999999999999999999998863 4556666777888888777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 007288 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMP 477 (609)
Q Consensus 402 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 477 (609)
+-+.....|- ++.....+...|+++++.++|.+... -|... -.....|..+.|.++.++++
T Consensus 82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~------~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGS---LPLAY------AVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHH------HHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHH------HHHHHcCcHHHHHHHHHHhC
Confidence 7666665542 34555566778999999999876522 12111 11123577788888888875
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.81 E-value=0.7 Score=37.12 Aligned_cols=56 Identities=9% Similarity=-0.034 Sum_probs=45.5
Q ss_pred HhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 007288 493 KEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSK 548 (609)
Q Consensus 493 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 548 (609)
...++.++|.++|+.++.+...-...|...+.--.++|+...|.+++.+....+.+
T Consensus 71 ~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 71 KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 34479999999999998764444667777777778999999999999999987764
No 242
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.82 E-value=1.6 Score=34.20 Aligned_cols=45 Identities=9% Similarity=0.014 Sum_probs=24.9
Q ss_pred HHHHHHHHHhccCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 500 LGKLAALRVLDLKP-NMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 500 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
+++.+++.+.+..| .....+..|+-++.+.|+|++|.++.+.+.+
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45555555555444 2234455566666666666666666666654
No 243
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.45 E-value=11 Score=35.08 Aligned_cols=168 Identities=7% Similarity=-0.051 Sum_probs=99.4
Q ss_pred HHhHHHHHHHccCChhHHHHhhccCCCCCcccHHHHHHHHHcCCChhHHHHHH----HHHHHCCCCCCcchHHHHHHHhh
Q 007288 48 LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF----VEMVRNEVNPNAFTLSSVLKACK 123 (609)
Q Consensus 48 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~g~~p~~~t~~~ll~~~~ 123 (609)
.|.++..-|.+++++++|++++ ..-...+.+.|+...|-++- +-+.+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL-----------~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDIL-----------ASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHH-----------HHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5667777788888888887763 22333455667776666554 44556788888888888887776
Q ss_pred CCCChH-HHHHHHHHHHH----hC--CCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChh
Q 007288 124 GMKSLS-NAALVHGMAIK----EG--LEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGY 196 (609)
Q Consensus 124 ~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 196 (609)
....-+ .-..+.+.+++ .| ..-++.....+...|.+.+ ++.+|+..|-.-..++...|..++.-+.+.+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~-~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEG-EFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTT-CHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc
Confidence 655321 22334444443 33 3346677778888888888 8988888885333333356655555555444322
Q ss_pred hHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHH
Q 007288 197 GGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIK 242 (609)
Q Consensus 197 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 242 (609)
++- ...-..++ -|...+++..|..+++...+
T Consensus 185 e~d--------------lfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 TAP--------------LYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GHH--------------HHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred cHH--------------HHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 221 11111222 24446677777776665554
No 244
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.41 E-value=27 Score=37.83 Aligned_cols=38 Identities=16% Similarity=0.066 Sum_probs=28.3
Q ss_pred HHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 007288 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLL 207 (609)
Q Consensus 167 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 207 (609)
+.++|..+.. .-|..++....+.++.+.+.++|.++..
T Consensus 221 l~~Iy~k~~~---~dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 221 SFDFLMNMPN---CDYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHSSS---CCHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHhCCc---hhHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555542 3577788888889999999999999864
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.72 E-value=1.3 Score=43.12 Aligned_cols=69 Identities=7% Similarity=-0.085 Sum_probs=58.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCcccCce
Q 007288 485 WGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG-----MGSKKEVGM 553 (609)
Q Consensus 485 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~ 553 (609)
...++.++...|+++++...+..++..+|-+...+..++.+|.+.|+..+|.+.|++..+ .|+.|.|.+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 344567788899999999999999999998888999999999999999999999988764 478777654
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.08 E-value=16 Score=36.10 Aligned_cols=181 Identities=8% Similarity=0.037 Sum_probs=113.7
Q ss_pred chHHHHHHHHhHH-----CCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH----HhcCC-
Q 007288 295 SSECLNMFSKMKS-----ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMY----AKCGN- 364 (609)
Q Consensus 295 ~~~a~~~~~~m~~-----~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~- 364 (609)
.+.|++.+..+.+ ............++..|...++++...+.+..+.+..-.. ......+++.+ .....
T Consensus 32 ~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~~~ 110 (445)
T 4b4t_P 32 CNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSKSL 110 (445)
T ss_dssp HHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCCch
Confidence 6777776655543 2344456678888999999999999888777665432222 12223333322 22332
Q ss_pred -HHHHHHHHHhcCC---CC--c-----chHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCH---HHHHHHHHHHhcc
Q 007288 365 -ISDSQKIFSEMSD---RD--L-----VTWTSMMIGYGAHGHGKEAIELFDEMVK--SGVRPDR---IVFMAVLTACSHA 428 (609)
Q Consensus 365 -~~~A~~~~~~~~~---~~--~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~---~~~~~ll~~~~~~ 428 (609)
.+.-..+.+.+.. .- + .....|...|-..|++.+|..++.++.. .|..... ..+...++.|...
T Consensus 111 d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~ 190 (445)
T 4b4t_P 111 DLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILK 190 (445)
T ss_dssp HHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHC
Confidence 2333444444432 11 1 1234567788889999999999999875 2332222 3666777889999
Q ss_pred CCHHHHHHHHHHhhh----cCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007288 429 GLVDEGLKYFKSMND----YNVNPN--KEIYGCVVDLLGRAGRVKEAYELIKSM 476 (609)
Q Consensus 429 ~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 476 (609)
+++..|..+++++.. ....|+ ...+...+..+...+++.+|.+.|.++
T Consensus 191 ~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 191 GDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999988721 121222 245667778888889999998877665
No 247
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=86.97 E-value=15 Score=35.27 Aligned_cols=161 Identities=10% Similarity=0.014 Sum_probs=76.5
Q ss_pred HhHHHHHHHHHhhccHHHHHHHHHHHHHh-C---CCCchhHHHHHHHHHHhc-CCHHHHHHHHHhcCC---CCcchH---
Q 007288 315 FTFTSIIAACATLAALSCGQQVHAGIVRR-G---LDGNLALANALIDMYAKC-GNISDSQKIFSEMSD---RDLVTW--- 383 (609)
Q Consensus 315 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~---~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~---~~~~~~--- 383 (609)
.....+...+.+.|+.++...++...... + -.-.......+++.+... +..+.-.++..+..+ ..-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666677766666666544321 0 001223344555555543 222222233222221 111222
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--H---HHHHHHHHHHhccCCHHHHHHHHHHhhh--cCCCCChhHH
Q 007288 384 ---TSMMIGYGAHGHGKEAIELFDEMVKSGVRPD--R---IVFMAVLTACSHAGLVDEGLKYFKSMND--YNVNPNKEIY 453 (609)
Q Consensus 384 ---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~ 453 (609)
..++..|...|++.+|.+++.++.+.=-+.| . ..+..-+..|...+++.++...+..... ..+.+++.+.
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 1456666777777777777766665211111 1 2444555566667777777777666622 1222222221
Q ss_pred H----HHHHHHh-hcCCHHHHHHHHHh
Q 007288 454 G----CVVDLLG-RAGRVKEAYELIKS 475 (609)
Q Consensus 454 ~----~l~~~~~-~~g~~~~A~~~~~~ 475 (609)
. .-...+. ..+++..|...|-+
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHH
Confidence 1 1112233 56667776666544
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=86.29 E-value=3.5 Score=43.53 Aligned_cols=51 Identities=12% Similarity=0.033 Sum_probs=38.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHh
Q 007288 389 GYGAHGHGKEAIELFDEMVKSGVRPDR-IVFMAVLTACSHAGLVDEGLKYFKSM 441 (609)
Q Consensus 389 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~ 441 (609)
-+...|+++-|+++-++... ..|+. .+|..|..+|...|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 35567888888888888777 35554 48888888888888888888777766
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.66 E-value=9 Score=43.20 Aligned_cols=64 Identities=11% Similarity=-0.164 Sum_probs=48.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcc-----hHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 484 VWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG-----TYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
-|..++..+.+.+.++.+.+..+.+++..+.+.. .|..+...+...|+|++|...+-.+.....
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 3566778888999999999998888875442222 577788889999999999988877765433
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.88 E-value=18 Score=35.56 Aligned_cols=50 Identities=10% Similarity=0.137 Sum_probs=34.8
Q ss_pred hccHHHHHHHHHHHHHh-----CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 007288 327 LAALSCGQQVHAGIVRR-----GLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376 (609)
Q Consensus 327 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 376 (609)
.++++.|.+.+-.+.+. +...+......++..+...|+++...+.+..+.
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls 83 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS 83 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 37788888877666643 244556667778888888888888766665554
No 251
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.07 E-value=10 Score=27.74 Aligned_cols=87 Identities=16% Similarity=0.072 Sum_probs=60.2
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007288 329 ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408 (609)
Q Consensus 329 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 408 (609)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666655543 22222223445677899999999999999999999877644 577888888888888887
Q ss_pred CCCCCCHHHHHH
Q 007288 409 SGVRPDRIVFMA 420 (609)
Q Consensus 409 ~g~~p~~~~~~~ 420 (609)
+| .|....|..
T Consensus 97 sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 97 SS-DPALADFAA 107 (115)
T ss_dssp CS-SHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 76 555555543
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.43 E-value=9 Score=31.43 Aligned_cols=113 Identities=10% Similarity=0.036 Sum_probs=54.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC-----CCCc-------chHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHH-HHH
Q 007288 354 ALIDMYAKCGNISDSQKIFSEMS-----DRDL-------VTWTSMMIGYGAHGHGKEAIELFDEMVKSG-VRPDRI-VFM 419 (609)
Q Consensus 354 ~l~~~~~~~g~~~~A~~~~~~~~-----~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~-~~~ 419 (609)
.-+..+...|.++.|+-+.+.+. .+++ .++..+.+++...|++.+|...|++.++.. .-+... +..
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 34555666777777766665543 1332 134445566666777777777776654311 111111 110
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 007288 420 AVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479 (609)
Q Consensus 420 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 479 (609)
.+. ....... ......+.+.--.+..+|.+.|++++|+.+++.++.+
T Consensus 105 ~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 105 STG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred ccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 000 0000000 0112223344445667777788888888888777543
No 253
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.42 E-value=11 Score=27.61 Aligned_cols=87 Identities=13% Similarity=0.150 Sum_probs=59.4
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007288 329 ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408 (609)
Q Consensus 329 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 408 (609)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666665543 22222223445677899999999999999999999877744 567888888888878877
Q ss_pred CCCCCCHHHHHH
Q 007288 409 SGVRPDRIVFMA 420 (609)
Q Consensus 409 ~g~~p~~~~~~~ 420 (609)
+| .|....|..
T Consensus 98 sg-~p~~q~Fa~ 108 (116)
T 2p58_C 98 SQ-DPRIQTFVN 108 (116)
T ss_dssp CC-CHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 66 455555543
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=82.99 E-value=8.2 Score=37.31 Aligned_cols=68 Identities=12% Similarity=0.186 Sum_probs=41.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh-----hhcCCCCChhHH
Q 007288 385 SMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-----NDYNVNPNKEIY 453 (609)
Q Consensus 385 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~ 453 (609)
.++..+...|++++|+..+..+... -+-+...+..++.++...|+..+|++.|+.+ .+.|+.|+..+-
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3455556667777777666666653 1335556777777777777777777666665 234666665543
No 255
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=82.96 E-value=30 Score=32.21 Aligned_cols=167 Identities=15% Similarity=0.122 Sum_probs=104.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHH----HHHHHCCCCCCHHHHHHHHHHHh
Q 007288 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF----DEMVKSGVRPDRIVFMAVLTACS 426 (609)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~~~~~ll~~~~ 426 (609)
+|.++..-|.+.+++++|.+++..- ...+.+.|+...|.++. +-..+.++++|......|+..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4456666788899999998876442 33455667776665554 44455778888888888887776
Q ss_pred ccCCHH-HHHHHHHHh----hhcC--CCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChH
Q 007288 427 HAGLVD-EGLKYFKSM----NDYN--VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN 499 (609)
Q Consensus 427 ~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 499 (609)
....-+ .=..+.+++ .+.| ..-|+.....+...|.+.+++.+|...|- .+..+....+..++--+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~--- 181 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQD--- 181 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTS---
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhc---
Confidence 654311 112233333 2222 33467777888999999999999998884 344444456655553333332
Q ss_pred HHHHHHHHHhccCCCCcchHH-HHHHHHHhcCChHHHHHHHHHHHh
Q 007288 500 LGKLAALRVLDLKPNMMGTYI-ILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 500 ~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
.|.....|. ..+--|...++...|..+++...+
T Consensus 182 ------------~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 182 ------------ESHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ------------CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------CCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 232333333 355567778899999998877765
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=82.71 E-value=24 Score=39.72 Aligned_cols=144 Identities=13% Similarity=0.059 Sum_probs=97.5
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------------------
Q 007288 319 SIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-------------------- 378 (609)
Q Consensus 319 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------- 378 (609)
.++..+...+..+.+.++... ++.+....-.+..+|..+|++++|...|++....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 355556666776666554432 2334444455678888999999999999887520
Q ss_pred ------CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCC
Q 007288 379 ------DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR----IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP 448 (609)
Q Consensus 379 ------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 448 (609)
-..-|..++..|-+.+.++.++++-+..++..-.-+. ..|..+++++...|++++|...+-.+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 0013667778888889999998888877764222122 2577888899999999999888877754333
Q ss_pred ChhHHHHHHHHHhhcCCHHHH
Q 007288 449 NKEIYGCVVDLLGRAGRVKEA 469 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A 469 (609)
-......|+..++..|+.+.-
T Consensus 970 r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhh
Confidence 356677788777777765543
No 257
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=82.03 E-value=11 Score=27.89 Aligned_cols=62 Identities=21% Similarity=0.361 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh-hhcCCCCChhHHHHHHH
Q 007288 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVD 458 (609)
Q Consensus 395 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~ 458 (609)
+.-+..+-++.+....+.|+.......+++|.+.+++..|.++|+.. .+.| +...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 44456666677777778899999999999999999999999999888 3433 33556776664
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=81.94 E-value=8.2 Score=31.64 Aligned_cols=54 Identities=17% Similarity=0.076 Sum_probs=27.0
Q ss_pred HHHHhccCCHHHHHHHHHHhhhc-CCCCC-------hhHHHHHHHHHhhcCCHHHHHHHHHh
Q 007288 422 LTACSHAGLVDEGLKYFKSMNDY-NVNPN-------KEIYGCVVDLLGRAGRVKEAYELIKS 475 (609)
Q Consensus 422 l~~~~~~~~~~~a~~~~~~~~~~-~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~ 475 (609)
++.+...+.++.|+-+.+.+... +..|+ ..++..+.+++...|++.+|...|++
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~q 88 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTM 88 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 44455555666665555554111 11222 12344455666666666666666655
No 259
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=81.81 E-value=15 Score=28.74 Aligned_cols=27 Identities=11% Similarity=0.025 Sum_probs=13.4
Q ss_pred HHHHhCCChHHHHHHHHHHhccCCCCc
Q 007288 490 GACKEHRLPNLGKLAALRVLDLKPNMM 516 (609)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~~~~~~p~~~ 516 (609)
-++.+.|+++.|....+.+++.+|+|.
T Consensus 86 vg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 86 IGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 444455555555555555555555443
No 260
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=81.13 E-value=11 Score=27.89 Aligned_cols=60 Identities=10% Similarity=0.160 Sum_probs=43.2
Q ss_pred HHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007288 297 ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALID 357 (609)
Q Consensus 297 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 357 (609)
+..+-++.+....+.|++....+.+.+|.+.+++..|.++++-++.+- .....+|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 455556666667788888888888899988888888888888777543 222455666554
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=78.96 E-value=20 Score=32.17 Aligned_cols=121 Identities=13% Similarity=0.074 Sum_probs=64.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCC--CCChhHHHHHHHHHhhcCCH
Q 007288 389 GYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV--NPNKEIYGCVVDLLGRAGRV 466 (609)
Q Consensus 389 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 466 (609)
...+.|++++|++....-++.. +-|...-..++..+|-.|+++.|.+-++...+... .|....|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-------
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-------
Confidence 3456677777777777776652 33555666677777788888888777777754331 1122233333332
Q ss_pred HHHH-HHHHhC--C--CCCCHhhHHHHHHH--HHhCCChHHHHHHHHHHhccCCCCcc
Q 007288 467 KEAY-ELIKSM--P--FKPDESVWGPLLGA--CKEHRLPNLGKLAALRVLDLKPNMMG 517 (609)
Q Consensus 467 ~~A~-~~~~~~--~--~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~p~~~~ 517 (609)
+... ++|.-- + +.....-...|+.+ ....|+.+.|.++-.++.+..|..+.
T Consensus 78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 78 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1111 122111 1 11112222333333 34567777777777777776664443
No 262
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=78.84 E-value=23 Score=28.18 Aligned_cols=75 Identities=8% Similarity=-0.082 Sum_probs=44.2
Q ss_pred CCChhHHHHHHHHHhhcCCHH---HHHHHHHhC-CCCC-C-HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHH
Q 007288 447 NPNKEIYGCVVDLLGRAGRVK---EAYELIKSM-PFKP-D-ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520 (609)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 520 (609)
.|+..+--.+..++.++.+.+ +++.+++++ ...| + ......|.-++.+.|+++.|++..+.+++.+|+|..+-.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 345554445555666655433 345555554 1122 2 223334446788888888888888888888887755444
Q ss_pred H
Q 007288 521 I 521 (609)
Q Consensus 521 ~ 521 (609)
.
T Consensus 116 L 116 (144)
T 1y8m_A 116 L 116 (144)
T ss_dssp H
T ss_pred H
Confidence 3
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=78.40 E-value=17 Score=26.61 Aligned_cols=84 Identities=10% Similarity=0.023 Sum_probs=56.8
Q ss_pred CchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCC-chHHHHHHHHhHH
Q 007288 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKS 307 (609)
Q Consensus 229 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~ 307 (609)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+.+.-||...|-+|-. .+.| .+++...+..+..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45677777777666653 34444444556788999999999999999889988877644 4667 5666666666666
Q ss_pred CCCCCCHHhH
Q 007288 308 ERFSPNCFTF 317 (609)
Q Consensus 308 ~~~~p~~~t~ 317 (609)
+| .|....|
T Consensus 97 sg-~p~~q~F 105 (115)
T 2uwj_G 97 SS-DPALADF 105 (115)
T ss_dssp CS-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 55 3444444
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.60 E-value=3.4 Score=36.99 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=35.1
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC
Q 007288 459 LLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 459 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
.+.+.|++++|++.+..- ..+| |...-..|+..++-.|+++.|..-++...+++|.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 445667777776655443 3344 3444445557777777777777777777777773
No 265
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=77.52 E-value=49 Score=34.27 Aligned_cols=42 Identities=26% Similarity=0.275 Sum_probs=26.4
Q ss_pred hHHhHHHHHHHccCChhHHHHhhccCCC---CCcccHHHHHHHHHc
Q 007288 47 ILATNLIKSYFDEGLIEEARTLFDEMPE---RDVVSWTVMIAGYTS 89 (609)
Q Consensus 47 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 89 (609)
.+| ++|=-+.|+|.+++|.++.++... .-...+-..+..|+.
T Consensus 154 p~W-a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 154 PIW-ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp EHH-HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC--
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHh
Confidence 355 456677899999999998877642 112456667777764
No 266
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=77.45 E-value=19 Score=26.48 Aligned_cols=84 Identities=17% Similarity=0.137 Sum_probs=55.5
Q ss_pred CchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCC-chHHHHHHHHhHH
Q 007288 229 WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKS 307 (609)
Q Consensus 229 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~ 307 (609)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+.+.-||...|-+|-. .+.| .+++...+..+..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45677777777666653 33444444556778899999999999999889888877654 3556 5555555656665
Q ss_pred CCCCCCHHhH
Q 007288 308 ERFSPNCFTF 317 (609)
Q Consensus 308 ~~~~p~~~t~ 317 (609)
+| .|....|
T Consensus 98 sg-~p~~q~F 106 (116)
T 2p58_C 98 SQ-DPRIQTF 106 (116)
T ss_dssp CC-CHHHHHH
T ss_pred CC-CHHHHHH
Confidence 54 3444444
No 267
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=75.00 E-value=31 Score=30.84 Aligned_cols=208 Identities=12% Similarity=0.057 Sum_probs=101.9
Q ss_pred hHHHHHHHccCChhHHHHhhccCCCCCcc---cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcc---hHHHHHHHhh
Q 007288 50 TNLIKSYFDEGLIEEARTLFDEMPERDVV---SWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAF---TLSSVLKACK 123 (609)
Q Consensus 50 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---t~~~ll~~~~ 123 (609)
+..+...++.|+++....+++.-..++.. .-.+.+...+..|+. ++++.+.+.|..|+.. ..+. +...+
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~ 80 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRE----DIVELLLRHGADPVLRKKNGATP-FLLAA 80 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH----HHHHHHHHTTCCTTCCCTTCCCH-HHHHH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCH----HHHHHHHHcCCCCcccCCCCCCH-HHHHH
Confidence 45667778888888888888765443221 112344444556664 4555556666655432 1222 23333
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCcch--hhHHHHHHHhcCCCHHHHHHHHccCCCCChh-------------hHHHHHHH
Q 007288 124 GMKSLSNAALVHGMAIKEGLEGSIYV--ENSLMDVYATCCISMDNARLVFNDMKWKNDV-------------SWTTLITG 188 (609)
Q Consensus 124 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~~A~~~~~~~~~~~~~-------------~~~~li~~ 188 (609)
..|+.+ +++.+++.|..++... ..+.+...+..| +.+-...+++.-...+.. .. ..+..
T Consensus 81 ~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~-t~L~~ 154 (285)
T 1wdy_A 81 IAGSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYG-KVKALKFLYKRGANVNLRRKTKEDQERLRKGGA-TALMD 154 (285)
T ss_dssp HHTCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTT-CHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCC-CHHHH
T ss_pred HcCCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhC-CHHHHHHHHHhCCCcccccccHHHHHhhccCCC-cHHHH
Confidence 445543 4555566666554321 123344445566 777777777654433211 11 22333
Q ss_pred HHhcCChhhHHHHHHHHHHC-CCCCCHh---hHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhH--HHHHHHHHHhc
Q 007288 189 YAHSGNGYGGLGVFKEMLLE-GVEMNPY---SFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV--MNSILDMYCRF 262 (609)
Q Consensus 189 ~~~~g~~~~a~~~~~~m~~~-g~~p~~~---t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~ 262 (609)
.+..|+.+ +++.+.+. |..++.. ..+. +...+..++......+.+.+.+.|..++... -.+.+...++.
T Consensus 155 A~~~~~~~----~v~~Ll~~~~~~~~~~~~~g~t~-l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 229 (285)
T 1wdy_A 155 AAEKGHVE----VLKILLDEMGADVNACDNMGRNA-LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229 (285)
T ss_dssp HHHHTCHH----HHHHHHHTSCCCTTCCCTTSCCH-HHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHT
T ss_pred HHHcCCHH----HHHHHHHhcCCCCCccCCCCCCH-HHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc
Confidence 44455543 33334433 4433321 1222 2333345555555666677777765544321 11233334445
Q ss_pred CCHHHHHHHHH
Q 007288 263 DCLSDANQYFD 273 (609)
Q Consensus 263 g~~~~A~~~~~ 273 (609)
|+.+-+..+++
T Consensus 230 ~~~~~v~~Ll~ 240 (285)
T 1wdy_A 230 KHLGLVQRLLE 240 (285)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 55555444444
No 268
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=74.57 E-value=38 Score=28.55 Aligned_cols=79 Identities=8% Similarity=0.058 Sum_probs=32.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCchHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhh
Q 007288 248 NLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATL 327 (609)
Q Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 327 (609)
+..+....+..+.+.+..+....+.+.+..++...-...+.++...+..++...+..+.. .++...-...+.++...
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~ 103 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALK---DEDGWVRQSAAVALGQI 103 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT---CSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHh
Confidence 333334444444444443333334444444444443444444444442233333333332 23444444444444444
Q ss_pred cc
Q 007288 328 AA 329 (609)
Q Consensus 328 ~~ 329 (609)
++
T Consensus 104 ~~ 105 (201)
T 3ltj_A 104 GD 105 (201)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 269
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=74.48 E-value=40 Score=28.72 Aligned_cols=48 Identities=15% Similarity=0.101 Sum_probs=18.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 007288 348 NLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGH 395 (609)
Q Consensus 348 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 395 (609)
+..+-...+.++.+.|..+....+...+..++...-...+.++...+.
T Consensus 125 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 333334444444444443322223333333444333344444444443
No 270
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=73.46 E-value=57 Score=30.09 Aligned_cols=167 Identities=10% Similarity=0.036 Sum_probs=101.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHh
Q 007288 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL----FDEMVKSGVRPDRIVFMAVLTACS 426 (609)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~~~~ 426 (609)
.|.++..-|.+.+++++|.+++..- ...+.+.|+...|.++ ++-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3455666688888999998876542 3445667777766665 444455788888888888887765
Q ss_pred ccCCHH-HHHHHHHHh----hhcC--CCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhC---C
Q 007288 427 HAGLVD-EGLKYFKSM----NDYN--VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEH---R 496 (609)
Q Consensus 427 ~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~---~ 496 (609)
....-+ .=.++.+++ .+.| ...++.....+...|.+.|++.+|...|-. +..-+...+..++--.... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~-~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML-GTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh-CCCccHHHHHHHHHHHHHhcCCC
Confidence 532111 112333333 2222 224677888889999999999999987763 2111344454444332222 2
Q ss_pred ChHHHHHHHHHHhccCCCCcchH-HHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 497 LPNLGKLAALRVLDLKPNMMGTY-IILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 497 ~~~~a~~~~~~~~~~~p~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
... ....| ...+--|...|+...|..+++...+
T Consensus 183 ~~~---------------e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDS---------------TVAEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHH---------------HHHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred Ccc---------------hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 222 22222 2234456678899999999887764
No 271
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=71.84 E-value=26 Score=27.51 Aligned_cols=61 Identities=21% Similarity=0.365 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh-hhcCCCCChhHHHHHHH
Q 007288 396 GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVD 458 (609)
Q Consensus 396 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~ 458 (609)
.-+..+-++.+....+.|+.......+++|.+.+|+..|.++|+-. .+.| +...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 3455556666667778999999999999999999999999999988 3433 34666777665
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=68.66 E-value=64 Score=28.69 Aligned_cols=16 Identities=6% Similarity=0.165 Sum_probs=8.5
Q ss_pred HHHhcCCHHHHHHHHH
Q 007288 358 MYAKCGNISDSQKIFS 373 (609)
Q Consensus 358 ~~~~~g~~~~A~~~~~ 373 (609)
..++.|+.+-+..+++
T Consensus 225 ~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 225 LAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHh
Confidence 3444555555555555
No 273
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=68.37 E-value=54 Score=29.64 Aligned_cols=19 Identities=11% Similarity=0.039 Sum_probs=10.6
Q ss_pred HHHHHccCChhHHHHhhcc
Q 007288 53 IKSYFDEGLIEEARTLFDE 71 (609)
Q Consensus 53 i~~~~~~g~~~~A~~~~~~ 71 (609)
++..++.|+.+-+..+++.
T Consensus 35 L~~A~~~g~~~~v~~Ll~~ 53 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNA 53 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhC
Confidence 3444556666666665554
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=68.26 E-value=50 Score=28.07 Aligned_cols=54 Identities=6% Similarity=-0.038 Sum_probs=40.0
Q ss_pred CCChHHHHHHHHHHhc--cCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 007288 495 HRLPNLGKLAALRVLD--LKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSK 548 (609)
Q Consensus 495 ~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 548 (609)
.++...+..+|..+.. ++-.-+..|...+..+...|++.+|.++|+.=++.+-+
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 4446677777777754 55566778888888888888888888888877776554
No 275
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=68.02 E-value=31 Score=27.06 Aligned_cols=60 Identities=10% Similarity=0.160 Sum_probs=44.7
Q ss_pred HHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007288 297 ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALID 357 (609)
Q Consensus 297 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 357 (609)
+..+-++.+....+.|++......+.+|.+.+++..|.++++-++.+- .+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 344555666667788999999999999999999999999998887553 233556666654
No 276
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=66.38 E-value=51 Score=28.55 Aligned_cols=24 Identities=0% Similarity=-0.224 Sum_probs=12.0
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCC
Q 007288 87 YTSFNCHNQAWTVFVEMVRNEVNP 110 (609)
Q Consensus 87 ~~~~~~~~~a~~~~~~m~~~g~~p 110 (609)
.++.|+.+.+..+++.+.+.|..+
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCC
Confidence 344555555555555554444443
No 277
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=65.49 E-value=60 Score=27.23 Aligned_cols=17 Identities=6% Similarity=-0.255 Sum_probs=7.3
Q ss_pred ChhHHHHHHHHHHhcCC
Q 007288 248 NLPVMNSILDMYCRFDC 264 (609)
Q Consensus 248 ~~~~~~~l~~~~~~~g~ 264 (609)
+..+-...+.++.+.++
T Consensus 120 ~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 120 DWFVRIAAAFALGEIGD 136 (201)
T ss_dssp SHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 34444444444444444
No 278
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=64.66 E-value=46 Score=28.68 Aligned_cols=112 Identities=14% Similarity=0.045 Sum_probs=56.2
Q ss_pred HHHHHccCChhHHHHhhccCCCC---CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcch---HHHHHHHhhCCC
Q 007288 53 IKSYFDEGLIEEARTLFDEMPER---DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFT---LSSVLKACKGMK 126 (609)
Q Consensus 53 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~~ 126 (609)
+...++.|+++....+++.-..+ +..-. +.+...+..|+.+ +++.+.+.|..++... -.+.+...+..|
T Consensus 13 l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~ 87 (240)
T 3eu9_A 13 IVKATQYGIYERCRELVEAGYDVRQPDKENV-TLLHWAAINNRID----LVKYYISKGAIVDQLGGDLNSTPLHWATRQG 87 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHH----HHHHHHHTTCCTTCCBTTTTBCHHHHHHHHT
T ss_pred HHHHHHcCChHHHHHHHHcCCCcCCCCCCCC-CHHHHHHHhCCHH----HHHHHHHcCCcchhhcCCcCCChhHHHHHcC
Confidence 34456788888888887754332 22222 3444455666654 4455555555443221 112333333445
Q ss_pred ChHHHHHHHHHHHHhCCCCCcc--hhhHHHHHHHhcCCCHHHHHHHHccC
Q 007288 127 SLSNAALVHGMAIKEGLEGSIY--VENSLMDVYATCCISMDNARLVFNDM 174 (609)
Q Consensus 127 ~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~~A~~~~~~~ 174 (609)
+.+ +++.+.+.|..++.. .....+...+..| +.+-+..+++.-
T Consensus 88 ~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~-~~~~~~~Ll~~~ 132 (240)
T 3eu9_A 88 HLS----MVVQLMKYGADPSLIDGEGCSCIHLAAQFG-HTSIVAYLIAKG 132 (240)
T ss_dssp CHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTT
T ss_pred CHH----HHHHHHHcCCCCcccCCCCCCHHHHHHHcC-HHHHHHHHHhcC
Confidence 544 445555666655432 1123344445556 777666666643
No 279
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=64.26 E-value=61 Score=27.02 Aligned_cols=55 Identities=7% Similarity=0.059 Sum_probs=30.7
Q ss_pred HHHHHccCChhHHHHhhccCC-C---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCc
Q 007288 53 IKSYFDEGLIEEARTLFDEMP-E---RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNA 112 (609)
Q Consensus 53 i~~~~~~g~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 112 (609)
+...+..|+.+....+++.-. . .+..-++.+..+ ++.|+ .++++.+.+.|..++.
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~----~~~v~~Ll~~g~~~~~ 67 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA-VHNND----IEIAKALIDRGADINL 67 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH-HHHTC----HHHHHHHHHTTCCTTC
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH-HHcCC----HHHHHHHHHcCCCCCC
Confidence 445566788888888887654 2 233333344333 34455 3455555566665554
No 280
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=63.37 E-value=63 Score=27.45 Aligned_cols=56 Identities=14% Similarity=0.164 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC
Q 007288 394 GHGKEAIELFDEMVKSGVRPDR-IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN 449 (609)
Q Consensus 394 g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 449 (609)
+....+.++|..|...|+--.. .-|......+...|++.+|.++|+.-++.+-.|-
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4466788888888877765544 3566666777778888888888887777776664
No 281
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=62.07 E-value=23 Score=31.48 Aligned_cols=53 Identities=8% Similarity=-0.028 Sum_probs=28.4
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCcch-------HHHHHHHhh--CCCChHHHHHHHHHH
Q 007288 86 GYTSFNCHNQAWTVFVEMVRNEVNPNAFT-------LSSVLKACK--GMKSLSNAALVHGMA 138 (609)
Q Consensus 86 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~t-------~~~ll~~~~--~~~~~~~a~~~~~~~ 138 (609)
..++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 34456777776667776666555555332 233333332 456666555555543
No 282
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.75 E-value=47 Score=32.40 Aligned_cols=34 Identities=0% Similarity=-0.175 Sum_probs=22.1
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 512 KPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 512 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
.|-.......++..+.- ..+++.+.+.+|+..|-
T Consensus 343 ~~Ys~I~l~~mA~~l~~--s~~~~E~~L~~lI~~g~ 376 (429)
T 4b4t_R 343 ESYKTLSLKSMASAFGV--SVAFLDNDLGKFIPNKQ 376 (429)
T ss_dssp HTCSEEEHHHHHHHHTS--CHHHHHHHHHHHHHHTS
T ss_pred HHhceeeHHHHHHHhCc--CHHHHHHHHHHHHHcCC
Confidence 34445566666666643 46788888888887553
No 283
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=58.91 E-value=1.2e+02 Score=28.62 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCC----hhHHHHHHHHHHhCC--chHHHHHHHHhHHCCCCC
Q 007288 253 NSILDMYCRFDCLSDANQYFDEMTEKD----LITWNTIIAGYEKSG--SSECLNMFSKMKSERFSP 312 (609)
Q Consensus 253 ~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~~--~~~a~~~~~~m~~~~~~p 312 (609)
..++.-|...|+.++|...++++..|+ ...+..+..++-+.. .+.+..++..+...++-+
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls 81 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIAT 81 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCC
Confidence 455666666677777777777766553 123333333333333 344555666666554433
No 284
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.64 E-value=19 Score=35.35 Aligned_cols=96 Identities=9% Similarity=-0.079 Sum_probs=62.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhc--CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHhhHHHHH-
Q 007288 417 VFMAVLTACSHAGLVDEGLKYFKSMNDY--NVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM----PFKPDESVWGPLL- 489 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~- 489 (609)
+...+...+.+.|++++|.+++.++... +..--...+-..+..+...+++..+...++++ ...++....+.+-
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5667788888889999999988888443 22333566777788888888888888888776 1223322222211
Q ss_pred ---HHHHhCCChHHHHHHHHHHhccC
Q 007288 490 ---GACKEHRLPNLGKLAALRVLDLK 512 (609)
Q Consensus 490 ---~~~~~~~~~~~a~~~~~~~~~~~ 512 (609)
..+...+++..|-..|-.+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 22456677877777776665543
No 285
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=56.40 E-value=1.4e+02 Score=28.67 Aligned_cols=206 Identities=10% Similarity=0.049 Sum_probs=99.9
Q ss_pred HHHHHHHccCChhHHHHhhccCCCCCcc--cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcch--HHHHHHHhhCCC
Q 007288 51 NLIKSYFDEGLIEEARTLFDEMPERDVV--SWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFT--LSSVLKACKGMK 126 (609)
Q Consensus 51 ~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~ 126 (609)
+.++..+..|+.+-+..+++.-..++.. ...+.+...+..|+.+-+. .+.+.|..++... -.+.+...+..|
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~g 91 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAK----YLLQNKAKVNAKAKDDQTPLHCAARIG 91 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHH----HHHHHTCCSSCCCTTSCCHHHHHHHHT
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHhCCCCCCCCCCCCCCHHHHHHHCC
Confidence 4566777889999888888764443322 1223344445566655444 4444454443221 122333344556
Q ss_pred ChHHHHHHHHHHHHhCCCCCcch--hhHHHHHHHhcCCCHHHHHHHHccCCCC---ChhhHHHHHHHHHhcCChhhHHHH
Q 007288 127 SLSNAALVHGMAIKEGLEGSIYV--ENSLMDVYATCCISMDNARLVFNDMKWK---NDVSWTTLITGYAHSGNGYGGLGV 201 (609)
Q Consensus 127 ~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~ 201 (609)
+.+ +.+.+++.|..++... ..+.+...+..| +.+.+..+++.-... +...++ .+...+..|+.+ +
T Consensus 92 ~~~----~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~g~t-~L~~A~~~g~~~----~ 161 (437)
T 1n11_A 92 HTN----MVKLLLENNANPNLATTAGHTPLHIAAREG-HVETVLALLEKEASQACMTKKGFT-PLHVAAKYGKVR----V 161 (437)
T ss_dssp CHH----HHHHHHHHTCCTTCCCTTCCCHHHHHHHHT-CHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHH----H
T ss_pred CHH----HHHHHHhCCCCCCCCCCCCCcHHHHHHHcC-CHHHHHHHHhCCCCCcCCCCCCCC-HHHHHHHcCCHH----H
Confidence 654 4555566676554321 223344455566 888887777654332 222222 233445556643 4
Q ss_pred HHHHHHCCCCCCHhh--HHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhH--HHHHHHHHHhcCCHHHHHHHHHh
Q 007288 202 FKEMLLEGVEMNPYS--FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV--MNSILDMYCRFDCLSDANQYFDE 274 (609)
Q Consensus 202 ~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~ 274 (609)
++.+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..+++.
T Consensus 162 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 234 (437)
T 1n11_A 162 AELLLERDAHPNAAGKNGLTPLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY 234 (437)
T ss_dssp HHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 444455555444321 112233344455544 3334444444333211 11233344556666666655554
No 286
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=55.25 E-value=95 Score=26.20 Aligned_cols=17 Identities=6% Similarity=-0.255 Sum_probs=7.0
Q ss_pred ChhHHHHHHHHHHhcCC
Q 007288 248 NLPVMNSILDMYCRFDC 264 (609)
Q Consensus 248 ~~~~~~~l~~~~~~~g~ 264 (609)
+..+-...+.++.+.|+
T Consensus 125 ~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 33343444444444443
No 287
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=54.07 E-value=8.2 Score=27.52 Aligned_cols=29 Identities=17% Similarity=0.348 Sum_probs=24.7
Q ss_pred CcHHHHHHHHHHHHHHHHHcCcccCcccc
Q 007288 573 SHTQYVYGVLEMLIRHMNETAYEPDIDCL 601 (609)
Q Consensus 573 ~~~~~~~~~~~~l~~~m~~~g~~pd~~~~ 601 (609)
+...++++.+++..++++..||.||...+
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDIiL~ 41 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDIILF 41 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 45677888899999999999999998654
No 288
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=52.20 E-value=1.1e+02 Score=26.10 Aligned_cols=51 Identities=12% Similarity=0.038 Sum_probs=28.8
Q ss_pred HHHHHHHccCChhHHHHhhccCC-C---CCcccHHHHHHHHHcCCChhHHHHHHHH
Q 007288 51 NLIKSYFDEGLIEEARTLFDEMP-E---RDVVSWTVMIAGYTSFNCHNQAWTVFVE 102 (609)
Q Consensus 51 ~li~~~~~~g~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ 102 (609)
+.+...++.|+.+....+++.-. . .|..-++.+ ...+..|+.+-+..+++.
T Consensus 5 t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~~ 59 (232)
T 2rfa_A 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETAL-HIAALYDNLEAAMVLMEA 59 (232)
T ss_dssp CHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHH-HHHHHcCCHHHHHHHHHc
Confidence 44566677888888888887522 2 333333333 334456666555544443
No 289
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=50.32 E-value=95 Score=26.69 Aligned_cols=77 Identities=10% Similarity=0.009 Sum_probs=40.8
Q ss_pred HHHHHHHccCChhHHHHhhccC-------CCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchH--HHHHHH
Q 007288 51 NLIKSYFDEGLIEEARTLFDEM-------PERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTL--SSVLKA 121 (609)
Q Consensus 51 ~li~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~--~~ll~~ 121 (609)
+.++..++.|+.+....+++.+ ...|..-++. +...+..|+. ++++.+.+.|..++.... .+.+..
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~ 85 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTP-LHLAVITTLP----SVVRLLVTAGASPMALDRHGQTAAHL 85 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCH-HHHHHHcCCH----HHHHHHHHcCCCccccCCCCCCHHHH
Confidence 4566777889998888887632 1223323333 3344456664 455566666766554321 123333
Q ss_pred hhCCCChHHHH
Q 007288 122 CKGMKSLSNAA 132 (609)
Q Consensus 122 ~~~~~~~~~a~ 132 (609)
.+..|+.+-+.
T Consensus 86 A~~~~~~~~~~ 96 (241)
T 1k1a_A 86 ACEHRSPTCLR 96 (241)
T ss_dssp HHHTTCHHHHH
T ss_pred HHHcCCHHHHH
Confidence 44556655443
No 290
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=50.15 E-value=99 Score=24.88 Aligned_cols=49 Identities=8% Similarity=-0.058 Sum_probs=37.5
Q ss_pred HHHHHHHHhc--cCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 007288 501 GKLAALRVLD--LKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKK 549 (609)
Q Consensus 501 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 549 (609)
+..+|..+.. ++-.-+..|...+..+...|++.+|.++|+.=++.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 6677777755 455667788888888999999999999988887765543
No 291
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=49.48 E-value=70 Score=28.08 Aligned_cols=86 Identities=9% Similarity=0.016 Sum_probs=43.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH--CCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHH
Q 007288 387 MIGYGAHGHGKEAIELFDEMVK--SGVRP----DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLL 460 (609)
Q Consensus 387 i~~~~~~g~~~~A~~~~~~m~~--~g~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 460 (609)
++.+....++++|.+++++..+ .+.++ +.......+..-.....-.-+..+.+++.. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 4555666667777666665543 12221 111222222222222222333344444422 34555566677788
Q ss_pred hhcCCHHHHHHHHHh
Q 007288 461 GRAGRVKEAYELIKS 475 (609)
Q Consensus 461 ~~~g~~~~A~~~~~~ 475 (609)
.+.|+.++|.++|=+
T Consensus 102 ~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHH
Confidence 888888888877744
No 292
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=49.26 E-value=65 Score=25.05 Aligned_cols=63 Identities=17% Similarity=0.334 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCH
Q 007288 353 NALIDMYAKCGNISDSQKIFSEMSDRDL---VTWTSMMIGYGAHGH--GKEAIELFDEMVKSGVRPDR 415 (609)
Q Consensus 353 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 415 (609)
..++.-|...|+.++|.+.++++..|.- .....+..++-+.++ .+.+..++..+.+.|+-+..
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 5577778888888888888888876522 233334444444332 35667777777776654433
No 293
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=48.88 E-value=1.8e+02 Score=27.43 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=12.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 007288 384 TSMMIGYGAHGHGKEAIELFDEMV 407 (609)
Q Consensus 384 ~~li~~~~~~g~~~~A~~~~~~m~ 407 (609)
+.++.-|...|+.++|...++++.
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~ 244 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELE 244 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHhccCCCHHHHHHHHHHcc
Confidence 444555555555555555555553
No 294
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=48.79 E-value=2.4e+02 Score=28.96 Aligned_cols=377 Identities=6% Similarity=-0.039 Sum_probs=193.2
Q ss_pred HHhHHHHHHHccCChhHHHHhhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCC
Q 007288 48 LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKS 127 (609)
Q Consensus 48 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 127 (609)
+-+..+..+.+.+++...+.++.. +..+...-.....+....|+..+|......+-..|. .....+..++..+.+.|.
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCC
Confidence 345566778888999999998877 433444455677778888998888888888877664 356677788888776665
Q ss_pred hHHH--HHHHHHHHHhCC-----------CCCcc-hhhHHHHHHHhcCCCHHHHHHHHccCCCCChh---hHHHHHHHHH
Q 007288 128 LSNA--ALVHGMAIKEGL-----------EGSIY-VENSLMDVYATCCISMDNARLVFNDMKWKNDV---SWTTLITGYA 190 (609)
Q Consensus 128 ~~~a--~~~~~~~~~~~~-----------~~~~~-~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~~~---~~~~li~~~~ 190 (609)
+... .+=++.+...|- .++.. ....++.++. +...+........ ++.. .+...+.-+.
T Consensus 152 lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~----~p~~~~~~~~~~~-~~~~~~~~~~~~~~rla 226 (618)
T 1qsa_A 152 QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN----NPNTVLTFARTTG-ATDFTRQMAAVAFASVA 226 (618)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH----CGGGHHHHHHHSC-CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh----ChHhHHHHHhccC-CChhhHHHHHHHHHHHH
Confidence 4332 222222222221 11110 1122222221 2222222222221 1111 1222233333
Q ss_pred hcCChhhHHHHHHHHHHCCCCCCHhhHHHHHH----HHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 007288 191 HSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR----ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLS 266 (609)
Q Consensus 191 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~----~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 266 (609)
+ .+.+.|...+......+. .+......+-. .....+...++...+...... ..+.....-.+....+.|+++
T Consensus 227 r-~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~ 302 (618)
T 1qsa_A 227 R-QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRR 302 (618)
T ss_dssp H-HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHH
T ss_pred h-cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHH
Confidence 3 378899999988865432 23333322222 233344345555566554433 344444555555666889999
Q ss_pred HHHHHHHhcCCCC---hhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHH
Q 007288 267 DANQYFDEMTEKD---LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342 (609)
Q Consensus 267 ~A~~~~~~~~~~~---~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 342 (609)
.|...|+.|.... ....--+..++...| .++|..+|..+... . +|-.++.+ .+.|..-.. ..
T Consensus 303 ~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~lAa-~~Lg~~~~~-------~~ 368 (618)
T 1qsa_A 303 GLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMVAA-QRIGEEYEL-------KI 368 (618)
T ss_dssp HHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHHHH-HHTTCCCCC-------CC
T ss_pred HHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHHHH-HHcCCCCCC-------CC
Confidence 9999999998642 222334556677788 88999999988642 1 33332221 122210000 00
Q ss_pred hCCCC-chh-----HHHHHHHHHHhcCCHHHHHHHHHhcCC-CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----
Q 007288 343 RGLDG-NLA-----LANALIDMYAKCGNISDSQKIFSEMSD-RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV---- 411 (609)
Q Consensus 343 ~~~~~-~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---- 411 (609)
....+ ... ....-+..+...|....|...+..+.+ .+......+.......|.++.++.........+.
T Consensus 369 ~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~ 448 (618)
T 1qsa_A 369 DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEER 448 (618)
T ss_dssp CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHH
T ss_pred CCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhh
Confidence 00000 000 111234456678888888877776653 2333333344444566777776655443221110
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChh
Q 007288 412 RPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE 451 (609)
Q Consensus 412 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 451 (609)
-|. .|..++....+...++..+-.--...+.++.|+..
T Consensus 449 ~P~--~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~a~ 486 (618)
T 1qsa_A 449 FPL--AYNDLFKRYTSGKEIPQSYAMAIARQESAWNPKVK 486 (618)
T ss_dssp SCC--TTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTTCB
T ss_pred CCc--chHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCc
Confidence 011 24455555555444444332222224555555543
No 295
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=47.32 E-value=1.1e+02 Score=24.61 Aligned_cols=54 Identities=9% Similarity=0.175 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCh
Q 007288 397 KEAIELFDEMVKSGVRPDR-IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK 450 (609)
Q Consensus 397 ~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 450 (609)
+.+.++|..|...|+--.. .-|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 3477888888887765544 35666667777888888888888887777777643
No 296
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=46.59 E-value=51 Score=29.84 Aligned_cols=91 Identities=7% Similarity=-0.103 Sum_probs=43.8
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHH
Q 007288 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEF 535 (609)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 535 (609)
.+...+..|+.+-+.-+++.-....+...-.+.+......|+.+-...+++.-...+..+.......+..-...|..
T Consensus 132 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~--- 208 (285)
T 3kea_A 132 SFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI--- 208 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH---
T ss_pred HHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCH---
Confidence 34444556776665555555432223212334444555677777777777665444432222222211222334443
Q ss_pred HHHHHHHHhCCCccc
Q 007288 536 AKFRKIMRGMGSKKE 550 (609)
Q Consensus 536 ~~~~~~m~~~~~~~~ 550 (609)
++.+.+.+.|..++
T Consensus 209 -~~v~~Ll~~gad~~ 222 (285)
T 3kea_A 209 -EMLQALFKYDINIY 222 (285)
T ss_dssp -HHHHHHTTSCBCST
T ss_pred -HHHHHHHHcCCCCC
Confidence 44555666666443
No 297
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=46.48 E-value=1.2e+02 Score=27.15 Aligned_cols=116 Identities=15% Similarity=0.025 Sum_probs=42.3
Q ss_pred HhHHHHHHHccCChhHHHHhhccCC--------------CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcch
Q 007288 49 ATNLIKSYFDEGLIEEARTLFDEMP--------------ERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFT 114 (609)
Q Consensus 49 ~~~li~~~~~~g~~~~A~~~~~~~~--------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t 114 (609)
....++..+..|+.++..++....+ ..+..-++.|. ..+..|+. ++++.+.+.|..++...
T Consensus 15 ~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~-~Aa~~g~~----~~v~~Ll~~g~~~~~~~ 89 (285)
T 3d9h_A 15 VPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMH-EAAIHGHQ----LSLRNLISQGWAVNIIT 89 (285)
T ss_dssp ---------------------------CCSEECCCCTTCSSSCCSCCHHH-HHHHTTCH----HHHHHHHHTTCCSCEEC
T ss_pred HHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHH-HHHHcCCH----HHHHHHHHCCCCCCCcC
Confidence 3567888888888888777543321 12333344443 44556665 44555555666555432
Q ss_pred H--HHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcc---hhhHHHHHHHhcCCCHHHHHHHHccCC
Q 007288 115 L--SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIY---VENSLMDVYATCCISMDNARLVFNDMK 175 (609)
Q Consensus 115 ~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~g~~~~~A~~~~~~~~ 175 (609)
. .+.+...+..|+.+ +.+.+++.|..++.. -.+.| ...+..| +.+-+..+++.-.
T Consensus 90 ~~g~t~L~~A~~~g~~~----~v~~Ll~~ga~~~~~~~~g~t~L-~~A~~~~-~~~~v~~Ll~~g~ 149 (285)
T 3d9h_A 90 ADHVSPLHEACLGGHLS----CVKILLKHGAQVNGVTADWHTPL-FNACVSG-SWDCVNLLLQHGA 149 (285)
T ss_dssp TTCCCHHHHHHHTTCHH----HHHHHHHTTCCSSCCCTTCCCHH-HHHHHHT-CHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHCCcHH----HHHHHHHCCCCCCCCCCCCCCHH-HHHHHcC-HHHHHHHHHHCCC
Confidence 1 12333334456654 344455556554432 22333 3334445 6666666665433
No 298
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=45.13 E-value=68 Score=28.13 Aligned_cols=87 Identities=5% Similarity=-0.056 Sum_probs=45.5
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHC--CCCC----CHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHH
Q 007288 185 LITGYAHSGNGYGGLGVFKEMLLE--GVEM----NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDM 258 (609)
Q Consensus 185 li~~~~~~g~~~~a~~~~~~m~~~--g~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 258 (609)
-++.+....++++|.+++++.... ++++ +.......+..-.....-.-+..+.+.+ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 466777788888888887766542 2221 1112222233222222223333343333 22 3445555666677
Q ss_pred HHhcCCHHHHHHHHHh
Q 007288 259 YCRFDCLSDANQYFDE 274 (609)
Q Consensus 259 ~~~~g~~~~A~~~~~~ 274 (609)
+.+.|+.++|..+|-+
T Consensus 101 L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHH
Confidence 7777777777777654
No 299
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=45.08 E-value=2.1e+02 Score=27.31 Aligned_cols=282 Identities=11% Similarity=0.030 Sum_probs=141.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC--------CChhHHHHHHHHHHhCC--chHHHHHHHHhHHCCCCCCHHhH----
Q 007288 252 MNSILDMYCRFDCLSDANQYFDEMTE--------KDLITWNTIIAGYEKSG--SSECLNMFSKMKSERFSPNCFTF---- 317 (609)
Q Consensus 252 ~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~--~~~a~~~~~~m~~~~~~p~~~t~---- 317 (609)
...|...|.+.|+.++..+++..... ...-.-..++..+.... .+.-.++..+..+..- -+..+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr~~ 100 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 45567777777777777777776653 12223445555555543 3333333333332100 011122
Q ss_pred --HHHHHHHHhhccHHHHHHHHHHHHHhCCCCc-----hhHHHHHHHHHHhcCCHHHHHHHHHhcCC------CCcchHH
Q 007288 318 --TSIIAACATLAALSCGQQVHAGIVRRGLDGN-----LALANALIDMYAKCGNISDSQKIFSEMSD------RDLVTWT 384 (609)
Q Consensus 318 --~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~ 384 (609)
..+...+...|++.+|..++..+.+.--..| ..++..-+.+|...+++.++...+..... +++....
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 2456667777777777777777665321212 22344456667777777777776655531 2222111
Q ss_pred H----HHHHHH-hcCCHHHHHHHHHHHHHC--CC-CCC---HHHHHHHHHHHhccCCHHHHHHHHH-Hh-hhcCCCCChh
Q 007288 385 S----MMIGYG-AHGHGKEAIELFDEMVKS--GV-RPD---RIVFMAVLTACSHAGLVDEGLKYFK-SM-NDYNVNPNKE 451 (609)
Q Consensus 385 ~----li~~~~-~~g~~~~A~~~~~~m~~~--g~-~p~---~~~~~~ll~~~~~~~~~~~a~~~~~-~~-~~~~~~~~~~ 451 (609)
. -...+. ..+++..|...|-+..+. .. .|. ...|..| .+... ++..+...++. .. ... ..|...
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~aLl~-~~r~el~~~l~~~~~~~~-~~pei~ 257 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CKIML-GQSDDVNQLVSGKLAITY-SGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHT-TCGGGHHHHHHSHHHHTT-CSHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHHHc-CCHHHHHHHhcccccccc-CCccHH
Confidence 1 122344 677888887777665421 00 111 1123222 22222 22222222221 11 111 245555
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 007288 452 IYGCVVDLLGRAGRVKEAYELIKSMP--FKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 529 (609)
.+..++.+| ..+++.+...+++... +..|......+-..+.+ --...+.++ ..|-....+..++..+.-
T Consensus 258 ~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~-----Ir~~~L~~i--~~pYsrIsl~~iA~~l~l- 328 (394)
T 3txn_A 258 AMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDT-----MLEQNLCRI--IEPYSRVQVAHVAESIQL- 328 (394)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHH-----HHHHHHHHH--HTTCSEEEHHHHHHHHTC-
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH-----HHHHHHHHH--hHhhceeeHHHHHHHHCc-
Confidence 666666665 5667777777777652 33344321111000000 000111111 357667778888887654
Q ss_pred CChHHHHHHHHHHHhCCC
Q 007288 530 GKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 530 g~~~~A~~~~~~m~~~~~ 547 (609)
..+++...+-+|...|.
T Consensus 329 -s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 329 -PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp -CHHHHHHHHHHHHHTTS
T ss_pred -CHHHHHHHHHHHHHCCC
Confidence 68899999999998765
No 300
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=44.28 E-value=1.3e+02 Score=24.56 Aligned_cols=49 Identities=8% Similarity=-0.011 Sum_probs=35.4
Q ss_pred HHHHHHHHhc--cCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 007288 501 GKLAALRVLD--LKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKK 549 (609)
Q Consensus 501 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 549 (609)
+..+|..+.. ++-.-+..|...+..+...|++.+|.++|+.=++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 5556666544 455567788888888888888888888888877766543
No 301
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=44.20 E-value=1.1e+02 Score=25.34 Aligned_cols=172 Identities=9% Similarity=0.027 Sum_probs=79.1
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcch--hhHHHHHHHhcCCCH
Q 007288 87 YTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYV--ENSLMDVYATCCISM 164 (609)
Q Consensus 87 ~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~ 164 (609)
.+..|+.+....++..-...--..|..-.+.|..+ +..|+.+ +++.+++.|..++... ..+.+...+..| +.
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~-~~ 85 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA-VHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQG-RT 85 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH-HHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CH
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH-HHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcC-CH
Confidence 35567776666665432111011122223333333 3445544 5555666776655432 223344455566 88
Q ss_pred HHHHHHHccCC-C---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHCC-CCC---CHhhHHHHHHHHHccCCchhHHHH
Q 007288 165 DNARLVFNDMK-W---KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG-VEM---NPYSFSIAVRACASTGWVSFGKLI 236 (609)
Q Consensus 165 ~~A~~~~~~~~-~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p---~~~t~~~ll~~~~~~g~~~~a~~~ 236 (609)
+-+..+++... . .+....+. +...+..|+.+-+ +.+.+.| ..+ |..-.+.+..++........-.++
T Consensus 86 ~~~~~Ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~ 160 (201)
T 3hra_A 86 EILAYMLKHATPDLNKHNRYGGNA-LIPAAEKGHIDNV----KLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDI 160 (201)
T ss_dssp HHHHHHHHHSCCCTTCCCTTSCCS-HHHHHHTTCHHHH----HHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHH
T ss_pred HHHHHHHhccCcccccccCCCCcH-HHHHHHcCCHHHH----HHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHH
Confidence 88888875432 1 22222222 3334455665433 3334444 222 222333444444333223344667
Q ss_pred HHHHHHhCCCCChhHH--HHHHHHHHhcCCHHHHH
Q 007288 237 HAAVIKHGFGSNLPVM--NSILDMYCRFDCLSDAN 269 (609)
Q Consensus 237 ~~~~~~~g~~~~~~~~--~~l~~~~~~~g~~~~A~ 269 (609)
.+.+.+.|..++.... .+-+...++.|+.+-+.
T Consensus 161 v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~ 195 (201)
T 3hra_A 161 VKLLMENGADQSIKDNSGRTAMDYANQKGYTEISK 195 (201)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHH
Confidence 7777777766543211 12233344445554443
No 302
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=43.91 E-value=1.2e+02 Score=25.06 Aligned_cols=93 Identities=11% Similarity=0.119 Sum_probs=48.3
Q ss_pred HHHccCChhHHHHhhccCCCC-CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcch---HHHHHHHhh-CCCChH
Q 007288 55 SYFDEGLIEEARTLFDEMPER-DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFT---LSSVLKACK-GMKSLS 129 (609)
Q Consensus 55 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t---~~~ll~~~~-~~~~~~ 129 (609)
..++.|+++....++..-... +...-.+.+...+..|+.+.-.++.+.+.+.|..++... .+.|..++. ...+..
T Consensus 12 ~Aa~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~ 91 (186)
T 3t8k_A 12 AAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDIT 91 (186)
T ss_dssp HHHHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHH
T ss_pred HHHHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchh
Confidence 345678888777777653321 101112334444556666666677777777777665532 223332222 122334
Q ss_pred HHHHHHHHHHHhCCCCCc
Q 007288 130 NAALVHGMAIKEGLEGSI 147 (609)
Q Consensus 130 ~a~~~~~~~~~~~~~~~~ 147 (609)
...++.+.+++.|..++.
T Consensus 92 ~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 92 GTTELCKIFLEKGADITA 109 (186)
T ss_dssp HHHHHHHHHHHTTCCSSS
T ss_pred hHHHHHHHHHHCCCCCCc
Confidence 445566666666665543
No 303
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=43.82 E-value=1.8e+02 Score=27.11 Aligned_cols=59 Identities=14% Similarity=0.260 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHhCC--chHHHHHHHHhHHCCCC
Q 007288 253 NSILDMYCRFDCLSDANQYFDEMTEKDL---ITWNTIIAGYEKSG--SSECLNMFSKMKSERFS 311 (609)
Q Consensus 253 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~--~~~a~~~~~~m~~~~~~ 311 (609)
..++.-|...|+.++|...++++..|.. .....+..++-+.. .+.+..++..+.+.|+-
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 4566677777788888888877765531 22222222332222 34455666666655543
No 304
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=41.23 E-value=2.1e+02 Score=26.18 Aligned_cols=211 Identities=11% Similarity=0.080 Sum_probs=97.3
Q ss_pred HHhHHHHHHHccCChhHHHHhhccCCCCCcc----cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchH--HHHHHH
Q 007288 48 LATNLIKSYFDEGLIEEARTLFDEMPERDVV----SWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTL--SSVLKA 121 (609)
Q Consensus 48 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~--~~ll~~ 121 (609)
--+..+...++.|+++-+..+++.-..+|.. -++.|. ..+..|+. ++.+.+.+.|..|+.... ...+..
T Consensus 24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh-~A~~~g~~----~iv~~Ll~~ga~~~~~~~~~~~~~~~ 98 (337)
T 4g8k_A 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLH-NAVQMSRE----DIVELLLRHGADPVLRKKNGATPFIL 98 (337)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHH-HHHHTTCH----HHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHH-HHHHcCCH----HHHHHHHHcCCchhhhccCCCchhHH
Confidence 3456677778899999999888764443322 233343 34556664 455556666765543221 111111
Q ss_pred hhCCCChHHHHHHHHHHHHhCCCCCc---chhhHHHHHHHhcCCCHHHHHHHHccCCCCC-------------hhhHHHH
Q 007288 122 CKGMKSLSNAALVHGMAIKEGLEGSI---YVENSLMDVYATCCISMDNARLVFNDMKWKN-------------DVSWTTL 185 (609)
Q Consensus 122 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~-------------~~~~~~l 185 (609)
....+... ....+...+..++. .-++. +...+..| ..+.+..+++.-...+ ...++.
T Consensus 99 ~~~~~~~~----~~~~~~~~~~~~~~~d~~g~t~-l~~A~~~~-~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~- 171 (337)
T 4g8k_A 99 AAIAGSVK----LLKLFLSKGADVNECDFYGFTA-FMEAAVYG-KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA- 171 (337)
T ss_dssp HHHHTCHH----HHHHHHTTTCCTTCBCTTCCBH-HHHHHHTT-CHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCH-
T ss_pred HHhcccch----hhHHhhhccchhhhhccCCCCH-HHHHHHcC-cHHHHHHHHHcCCCcchhhccccccccccCCCCcH-
Confidence 12222222 22223333333322 22233 33344555 7777766665432211 111222
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCHh---hHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhH--HHHHHHHHH
Q 007288 186 ITGYAHSGNGYGGLGVFKEMLLEGVEMNPY---SFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV--MNSILDMYC 260 (609)
Q Consensus 186 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~--~~~l~~~~~ 260 (609)
+...+..|+.+-+..+++ ..|..++.. ..+.+..++. .+.......+.+.+.+.|..++... -.+.+...+
T Consensus 172 L~~A~~~g~~~~v~~LL~---~~gad~n~~d~~g~t~l~~~~~-~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~ 247 (337)
T 4g8k_A 172 LMDAAEKGHVEVLKILLD---EMGADVNACDNMGRNALIHALL-SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 247 (337)
T ss_dssp HHHHHHHTCHHHHHHHHH---HSCCCTTCCCTTSCCHHHHHHH-HSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHh---ccCCCcCccCCCCCcHHHHHHH-HcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence 333445666543333332 234443321 1222222222 2222333445555667776554321 122344556
Q ss_pred hcCCHHHHHHHHHh
Q 007288 261 RFDCLSDANQYFDE 274 (609)
Q Consensus 261 ~~g~~~~A~~~~~~ 274 (609)
..|..+.+..++..
T Consensus 248 ~~~~~~~v~~Ll~~ 261 (337)
T 4g8k_A 248 EKKHLGLVQRLLEQ 261 (337)
T ss_dssp HTTCHHHHHHHHTS
T ss_pred HhhhhHHHHHHHHh
Confidence 67777777666653
No 305
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=40.60 E-value=60 Score=26.19 Aligned_cols=62 Identities=18% Similarity=0.341 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCC
Q 007288 353 NALIDMYAKCGNISDSQKIFSEMSDRDL---VTWTSMMIGYGAHGH--GKEAIELFDEMVKSGVRPD 414 (609)
Q Consensus 353 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 414 (609)
+.++.-|...|+.++|...++++..|.- .....+..++-+.++ .+.+..++..+...|+-+.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 5577778888888888888888876522 233334444444322 3456677777776665443
No 306
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=40.47 E-value=1.5e+02 Score=24.19 Aligned_cols=54 Identities=7% Similarity=0.167 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChh
Q 007288 398 EAIELFDEMVKSGVRPDRI-VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE 451 (609)
Q Consensus 398 ~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 451 (609)
.+.++|..|...|+--... -|......+...|++.+|.++|+.-++.+-.|-..
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 3667888888877655443 56666667777888888888888887777777543
No 307
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=37.84 E-value=1.2e+02 Score=26.42 Aligned_cols=115 Identities=5% Similarity=-0.038 Sum_probs=62.1
Q ss_pred HHHHHHccCChhHHHHhhccC----CCCC-------cccHHHHHHHHH--cCCChhHHHHHHHHHHHCC---------CC
Q 007288 52 LIKSYFDEGLIEEARTLFDEM----PERD-------VVSWTVMIAGYT--SFNCHNQAWTVFVEMVRNE---------VN 109 (609)
Q Consensus 52 li~~~~~~g~~~~A~~~~~~~----~~~~-------~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~g---------~~ 109 (609)
.+...++.|+.+....+++.+ ...+ ..-++.|..+.. +.|+.+-+.-+++.-...+ +.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 87 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc
Confidence 455666788888777776622 1222 223445555442 6677777777776643311 11
Q ss_pred -CCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcch----------------hhHHHHHHHhcCCCHHHHHHHHc
Q 007288 110 -PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYV----------------ENSLMDVYATCCISMDNARLVFN 172 (609)
Q Consensus 110 -p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------------~~~ll~~~~~~g~~~~~A~~~~~ 172 (609)
.|..-.+.|. ..+..|+.+ +.+.+++.|..++... ..+.+...+..| +.+-+..+++
T Consensus 88 ~~d~~g~t~L~-~A~~~g~~~----~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g-~~~~v~~Ll~ 161 (260)
T 3jxi_A 88 DVYYRGQTALH-IAIERRCKH----YVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTN-QPHIVHYLTE 161 (260)
T ss_dssp CSSEESBCHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTT-CHHHHHHHHH
T ss_pred ccccCCCCHHH-HHHHcCCHH----HHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcC-CHHHHHHHHh
Confidence 1112233333 334456654 4455566776665543 334455555666 7777777777
No 308
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=37.73 E-value=2.4e+02 Score=25.82 Aligned_cols=26 Identities=8% Similarity=0.235 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC
Q 007288 253 NSILDMYCRFDCLSDANQYFDEMTEK 278 (609)
Q Consensus 253 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 278 (609)
..++.-|...|+.++|...++++..|
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p 32 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLG 32 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCc
Confidence 34556666666777777777666554
No 309
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=37.31 E-value=1.4e+02 Score=23.06 Aligned_cols=63 Identities=14% Similarity=0.190 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhCC---chHHHHHHHHhHHCCCCCCHH
Q 007288 253 NSILDMYCRFDCLSDANQYFDEMTEKD---LITWNTIIAGYEKSG---SSECLNMFSKMKSERFSPNCF 315 (609)
Q Consensus 253 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~---~~~a~~~~~~m~~~~~~p~~~ 315 (609)
..++.-|...|+.++|...++++..|. ......+..++-+.+ .+.+..++..+...|+-+...
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 557777888888888888888887652 233445555555543 455677777777766554433
No 310
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=36.51 E-value=1.9e+02 Score=24.33 Aligned_cols=71 Identities=15% Similarity=0.115 Sum_probs=40.6
Q ss_pred HHHHHHHHHhCCCCCCH--hhHHHHH-----HHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHH
Q 007288 466 VKEAYELIKSMPFKPDE--SVWGPLL-----GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFA 536 (609)
Q Consensus 466 ~~~A~~~~~~~~~~p~~--~~~~~l~-----~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 536 (609)
++.|+.+|+.++..-+. .....|+ ..|.+.|.+++|.+++++..+..+.+...-.-|...-.+...+...+
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~l 171 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFF 171 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHHH
Confidence 66788888888433231 1222232 55889999999999999988877755555555555544444443333
No 311
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=35.97 E-value=2.1e+02 Score=26.61 Aligned_cols=180 Identities=8% Similarity=-0.028 Sum_probs=84.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------------------
Q 007288 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI------------------ 416 (609)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------------------ 416 (609)
.+...+..|+.+-+.-+++.-...+...-...+...+..|+.+-+..+++.....|..|+..
T Consensus 56 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (364)
T 3ljn_A 56 ALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKH 135 (364)
T ss_dssp HHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEE
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCC
Confidence 34445556777776666666554333111122333456677777666666654445444330
Q ss_pred --HHHHHHHHHhccC--CHHHHHHHHHHhhhcCCCCChhH--HHHHHHHHhhcCCHHHHHHHHHhCCC-------CCCHh
Q 007288 417 --VFMAVLTACSHAG--LVDEGLKYFKSMNDYNVNPNKEI--YGCVVDLLGRAGRVKEAYELIKSMPF-------KPDES 483 (609)
Q Consensus 417 --~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~-------~p~~~ 483 (609)
-.+.| ...+..| +.+-+..++ +.|..++... -.+.+...+..|+.+-+..+++.... ..+..
T Consensus 136 ~~g~t~L-~~A~~~g~~~~~~v~~Ll----~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 210 (364)
T 3ljn_A 136 CKGQTAL-HWCVGLGPEYLEMIKILV----QLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQ 210 (364)
T ss_dssp ESCCCHH-HHHHHSCGGGHHHHHHHH----HHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTT
T ss_pred CCCCCHH-HHHHHcCCchHHHHHHHH----HcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCC
Confidence 12223 3334445 444333333 3344433211 11233344567888777777765311 11222
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 007288 484 VWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKI 541 (609)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (609)
.++.| ......|+.+-...+++.-...+..+......|- .-...|..+-+..+++.
T Consensus 211 g~t~L-~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~-~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 211 GNSHL-HWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLY-LSVRAAMVLLTKELLQK 266 (364)
T ss_dssp CCCTT-HHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHH-HHHHTCCHHHHHHHHHH
T ss_pred CCcHH-HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH-HHHHhChHHHHHHHHHc
Confidence 22233 3344667776665555543233222222222232 23455776665555554
No 312
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=34.77 E-value=1.8e+02 Score=23.37 Aligned_cols=64 Identities=13% Similarity=0.161 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhC-C--chHHHHHHHHhHHCCCCCCHH
Q 007288 252 MNSILDMYCRFDCLSDANQYFDEMTEKD---LITWNTIIAGYEKS-G--SSECLNMFSKMKSERFSPNCF 315 (609)
Q Consensus 252 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~-~--~~~a~~~~~~m~~~~~~p~~~ 315 (609)
.+.++.-|...|+.++|...++++..|. ......+..++-+. . .+.+..++..+...++-+...
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 3567777888889999998888887652 23444555556553 2 456777888887776554433
No 313
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=34.74 E-value=2.1e+02 Score=24.20 Aligned_cols=112 Identities=12% Similarity=-0.008 Sum_probs=55.3
Q ss_pred HHHHHHHccCChhHHHHhhccCC----CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcc---hHHHHHHHhh
Q 007288 51 NLIKSYFDEGLIEEARTLFDEMP----ERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAF---TLSSVLKACK 123 (609)
Q Consensus 51 ~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---t~~~ll~~~~ 123 (609)
..+...++.|+++....+++.-. .++..-++.+.. .+..|+. ++++.+.+.|..++.. ..+.+.. .+
T Consensus 8 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~-A~ 81 (231)
T 3aji_A 8 IMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHW-ACSAGHT----EIVEFLLQLGVPVNDKDDAGWSPLHI-AA 81 (231)
T ss_dssp SHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHH-HHHHTCH----HHHHHHHHTTCCSCCCCTTSCCHHHH-HH
T ss_pred chHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHH-HHHcCcH----HHHHHHHHhCCCCCCcCCCCCCHHHH-HH
Confidence 34667777888888888876543 233333344433 3445553 4445555556555432 2223322 23
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCcch--hhHHHHHHHhcCCCHHHHHHHHcc
Q 007288 124 GMKSLSNAALVHGMAIKEGLEGSIYV--ENSLMDVYATCCISMDNARLVFND 173 (609)
Q Consensus 124 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~~A~~~~~~ 173 (609)
..|+.+ +++.+++.|..++... ..+.+...+..| +.+-+..+++.
T Consensus 82 ~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll~~ 128 (231)
T 3aji_A 82 SAGXDE----IVKALLVKGAHVNAVNQNGCTPLHYAASKN-RHEIAVMLLEG 128 (231)
T ss_dssp HHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHT
T ss_pred HcCHHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHHc
Confidence 334443 4445555665443321 122333344445 66655555554
No 314
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=34.55 E-value=1.2e+02 Score=26.13 Aligned_cols=53 Identities=13% Similarity=0.254 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC
Q 007288 397 KEAIELFDEMVKSGVRPDRI-VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN 449 (609)
Q Consensus 397 ~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 449 (609)
+.+.++|..|...|+--... -|......+...|++.+|..+|+.-++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 46667888888777655443 566666667777888888888887776666663
No 315
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=34.42 E-value=2.5e+02 Score=26.85 Aligned_cols=207 Identities=11% Similarity=0.067 Sum_probs=94.9
Q ss_pred HHHHHHhcCCCHHHHHHHHccCCCCChh--hHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhh--HHHHHHHHHccC
Q 007288 153 LMDVYATCCISMDNARLVFNDMKWKNDV--SWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYS--FSIAVRACASTG 228 (609)
Q Consensus 153 ll~~~~~~g~~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~g 228 (609)
.+...+..| +.+-+..+++.-..++.. ...+.+...+..|+.+-+ +.+.+.|..++... -.+.+...+..|
T Consensus 17 ~L~~Aa~~g-~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~g 91 (437)
T 1n11_A 17 PLHVASFMG-HLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVA----KYLLQNKAKVNAKAKDDQTPLHCAARIG 91 (437)
T ss_dssp HHHHHHHHT-CHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHH----HHHHHHTCCSSCCCTTSCCHHHHHHHHT
T ss_pred HHHHHHHCC-CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCCCCCCCCCCCHHHHHHHCC
Confidence 445556667 888888888765443221 122334455566765443 34444454443221 123344455566
Q ss_pred CchhHHHHHHHHHHhCCCCChhH--HHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCchHHHHHHH
Q 007288 229 WVSFGKLIHAAVIKHGFGSNLPV--MNSILDMYCRFDCLSDANQYFDEMTEK---DLITWNTIIAGYEKSGSSECLNMFS 303 (609)
Q Consensus 229 ~~~~a~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~a~~~~~ 303 (609)
+.+- .+.+.+.|..++... -.+.+...++.|+.+-+..+++.-... +...++.|. ..+..|..+ +++
T Consensus 92 ~~~~----v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~-~A~~~g~~~---~v~ 163 (437)
T 1n11_A 92 HTNM----VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLH-VAAKYGKVR---VAE 163 (437)
T ss_dssp CHHH----HHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHH-HHHHTTCHH---HHH
T ss_pred CHHH----HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHH-HHHHcCCHH---HHH
Confidence 6554 444445565443211 122344556678887777777654332 111122222 223334222 233
Q ss_pred HhHHCCCCCCHHh--HHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCCHHHHHHHHHhcC
Q 007288 304 KMKSERFSPNCFT--FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLAL--ANALIDMYAKCGNISDSQKIFSEMS 376 (609)
Q Consensus 304 ~m~~~~~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~ 376 (609)
.+.+.|..++... -.+.+...+..|+.+. .+.+.+.|..++... ..+.+...+..|+.+-+..+++.-.
T Consensus 164 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 236 (437)
T 1n11_A 164 LLLERDAHPNAAGKNGLTPLHVAVHHNNLDI----VKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 236 (437)
T ss_dssp HHHHTTCCTTCCCSSCCCHHHHHHHTTCHHH----HHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 3344444443211 1112333344555443 333344444333211 1123344456677766666666433
No 316
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=34.36 E-value=2.1e+02 Score=24.16 Aligned_cols=43 Identities=12% Similarity=0.205 Sum_probs=30.0
Q ss_pred HHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 007288 386 MMIGY---GAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429 (609)
Q Consensus 386 li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 429 (609)
+|+++ .+..+.+.|+-.+.+|++.| .|....-..++.+...-|
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 44454 34578888888888888888 666666666666666555
No 317
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=34.34 E-value=2.3e+02 Score=31.06 Aligned_cols=51 Identities=6% Similarity=-0.055 Sum_probs=30.6
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007288 421 VLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476 (609)
Q Consensus 421 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 476 (609)
++..|...|.++-+.++...+ +.+...--.+..+|...|++++|.+.|++.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555666677666554433222 123332234667777888888888888777
No 318
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=33.41 E-value=2.8e+02 Score=25.30 Aligned_cols=81 Identities=11% Similarity=0.068 Sum_probs=34.9
Q ss_pred HHHhcCCHHHHHHHHHhcC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 007288 358 MYAKCGNISDSQKIFSEMS----DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDE 433 (609)
Q Consensus 358 ~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 433 (609)
..+..|..+.+..+++.-. ..|..-++.|..+ +..|+.+ +.+.+++.|..+|..+ .+...++.|+.+
T Consensus 245 ~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~- 315 (337)
T 4g8k_A 245 LAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA-VELKLKK----IAELLCKRGASTDCGD---LVMTARRNYDHS- 315 (337)
T ss_dssp HHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHHHHTTSCSSTTCC---HHHHHHHTTCHH-
T ss_pred HHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHH-HHcCCHH----HHHHHHHCCCCCCCCC---HHHHHHHcCCHH-
Confidence 3445555555555554311 1122222233222 3445543 3344456666666543 223334455543
Q ss_pred HHHHHHHhhhcCCCCCh
Q 007288 434 GLKYFKSMNDYNVNPNK 450 (609)
Q Consensus 434 a~~~~~~~~~~~~~~~~ 450 (609)
+.+.+.+.|-.||.
T Consensus 316 ---iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 316 ---LVKVLLSHGAKEDF 329 (337)
T ss_dssp ---HHHHHHHTTCCC--
T ss_pred ---HHHHHHHCcCCCCC
Confidence 34444556655553
No 319
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=32.94 E-value=2.6e+02 Score=24.72 Aligned_cols=18 Identities=6% Similarity=-0.090 Sum_probs=7.7
Q ss_pred CchhHHHHHHHHHHhcCC
Q 007288 347 GNLALANALIDMYAKCGN 364 (609)
Q Consensus 347 ~~~~~~~~l~~~~~~~g~ 364 (609)
++..+-...+.++.+.|+
T Consensus 140 ~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 140 KSTNVRRATAFAISVIND 157 (280)
T ss_dssp SCHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 444444444555555444
No 320
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=32.86 E-value=1.4e+02 Score=25.46 Aligned_cols=84 Identities=6% Similarity=-0.040 Sum_probs=37.8
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcc---hhhHHHHHHHh
Q 007288 83 MIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIY---VENSLMDVYAT 159 (609)
Q Consensus 83 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~ 159 (609)
.+...++.|+.+....+++.-...-..+|..-.+.|..+ +..|+.+ +++.+++.|..++.. -++. +...+.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~ 82 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWA-CSAGHTE----IVEFLLQLGVPVNDKDDAGWSP-LHIAAS 82 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHH-HHHTCHH----HHHHHHHTTCCSCCCCTTSCCH-HHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHH-HHcCcHH----HHHHHHHhCCCCCCcCCCCCCH-HHHHHH
Confidence 355556677777776666553221112232223333333 3344443 344455556544332 2222 333344
Q ss_pred cCCCHHHHHHHHcc
Q 007288 160 CCISMDNARLVFND 173 (609)
Q Consensus 160 ~g~~~~~A~~~~~~ 173 (609)
.| +.+-+..+++.
T Consensus 83 ~~-~~~~v~~Ll~~ 95 (231)
T 3aji_A 83 AG-XDEIVKALLVK 95 (231)
T ss_dssp HT-CHHHHHHHHHT
T ss_pred cC-HHHHHHHHHHc
Confidence 44 55555555544
No 321
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=32.29 E-value=1.3e+02 Score=26.66 Aligned_cols=18 Identities=6% Similarity=-0.003 Sum_probs=8.6
Q ss_pred cCCChhHHHHHHHHHHHC
Q 007288 89 SFNCHNQAWTVFVEMVRN 106 (609)
Q Consensus 89 ~~~~~~~a~~~~~~m~~~ 106 (609)
+.|+.+.+..+++...+.
T Consensus 22 ~~g~~~~v~~Ll~~~~~~ 39 (273)
T 2pnn_A 22 AQSNCQELESLLPFLQRS 39 (273)
T ss_dssp HTTCSSTTTTHHHHHHHS
T ss_pred HcCCHHHHHHHHHHHhhc
Confidence 445555555555444433
No 322
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=32.12 E-value=2.3e+02 Score=23.93 Aligned_cols=48 Identities=8% Similarity=-0.003 Sum_probs=21.5
Q ss_pred hCCCChHHHHHHHHHHHHhCCCCCcc--hhhHHHHHHHhcCCCHHHHHHHHccCC
Q 007288 123 KGMKSLSNAALVHGMAIKEGLEGSIY--VENSLMDVYATCCISMDNARLVFNDMK 175 (609)
Q Consensus 123 ~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~~A~~~~~~~~ 175 (609)
+..|+++. ++.+++.|..++.. ...+.+...+..| +.+-+..+++.-.
T Consensus 17 ~~~g~~~~----~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 17 TQYGIYER----CRELVEAGYDVRQPDKENVTLLHWAAINN-RIDLVKYYISKGA 66 (240)
T ss_dssp HHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTC
T ss_pred HHcCChHH----HHHHHHcCCCcCCCCCCCCCHHHHHHHhC-CHHHHHHHHHcCC
Confidence 34455443 33344455443322 1223344445555 6655555555433
No 323
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=32.05 E-value=1.6e+02 Score=23.34 Aligned_cols=45 Identities=11% Similarity=0.048 Sum_probs=23.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC
Q 007288 184 TLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228 (609)
Q Consensus 184 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 228 (609)
.++..+...+..-.|.++++.+.+.+...+..|..-.|..+...|
T Consensus 26 ~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 26 AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 344444444445556666666655555555555554555544444
No 324
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=31.59 E-value=3.2e+02 Score=29.86 Aligned_cols=52 Identities=13% Similarity=0.044 Sum_probs=39.4
Q ss_pred HHHHHHccCChhHHHHhhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHH
Q 007288 52 LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMV 104 (609)
Q Consensus 52 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 104 (609)
++..+...|..+-|.++....+. +...--.+.++|...|++++|.++|++.-
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 67777888999988887777765 33332356667889999999999998764
No 325
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=31.56 E-value=35 Score=25.04 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=23.1
Q ss_pred CChhHHHHhhccCCCCCcccHHHHHHHHHcCCChhHH
Q 007288 60 GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQA 96 (609)
Q Consensus 60 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 96 (609)
.+.+.|.++++.++..+..+|..++.++...|+...|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 3566666666666666666666776666655554433
No 326
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=31.51 E-value=1.2e+02 Score=30.19 Aligned_cols=50 Identities=10% Similarity=0.042 Sum_probs=30.2
Q ss_pred HHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 007288 490 GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFR 539 (609)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (609)
+..+-...++.|...|.++..+.|.+...|+.|+-.....|+.-+|.-.|
T Consensus 160 DL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y 209 (497)
T 1ya0_A 160 DIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYY 209 (497)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHH
Confidence 44444455566666666666666666666666666666666655555443
No 327
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=31.40 E-value=72 Score=25.35 Aligned_cols=34 Identities=12% Similarity=0.041 Sum_probs=15.6
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcch
Q 007288 81 TVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFT 114 (609)
Q Consensus 81 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t 114 (609)
..++..+...+.+-.|.++++.+.+.+...+..|
T Consensus 25 ~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aT 58 (145)
T 2fe3_A 25 HAILEYLVNSMAHPTADDIYKALEGKFPNMSVAT 58 (145)
T ss_dssp HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhh
Confidence 3444444444444455555555554443334333
No 328
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.94 E-value=1.5e+02 Score=23.60 Aligned_cols=44 Identities=7% Similarity=-0.019 Sum_probs=19.9
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC
Q 007288 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228 (609)
Q Consensus 185 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 228 (609)
++..+...+..-.|.++++.+.+.+...+..|..-.|..+...|
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33444444444455555555554444444444444444444333
No 329
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=30.85 E-value=1.4e+02 Score=27.83 Aligned_cols=18 Identities=11% Similarity=0.014 Sum_probs=9.5
Q ss_pred HHHHhcCCHHHHHHHHHh
Q 007288 257 DMYCRFDCLSDANQYFDE 274 (609)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~ 274 (609)
...+..|+.+-+..+++.
T Consensus 178 ~~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 178 MRAMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhc
Confidence 334455666655555554
No 330
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=30.57 E-value=1.9e+02 Score=24.60 Aligned_cols=149 Identities=7% Similarity=-0.022 Sum_probs=75.8
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCcc---hHHHHHHHhhCCCChHHHHHHHHHHHHhCCCC--------CcchhhH
Q 007288 84 IAGYTSFNCHNQAWTVFVEMVRNEVNPNAF---TLSSVLKACKGMKSLSNAALVHGMAIKEGLEG--------SIYVENS 152 (609)
Q Consensus 84 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~ 152 (609)
+...++.|+.+.+..+++. .|..++.. -.+. +...+..|+.+-+.. +++.|..+ +..-.+
T Consensus 7 L~~A~~~g~~~~v~~Ll~~---~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~~----Ll~~~~~~~~~~~~~~~~~g~t- 77 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKF---EGCEVHQRGAMGETA-LHIAALYDNLEAAMV----LMEAAPELVFEPMTSELYEGQT- 77 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTT---TCSCTTCCCTTSCCH-HHHHHHTTCHHHHHH----HHHHCGGGGGCCCCSTTTTTCC-
T ss_pred HHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCCH-HHHHHHcCCHHHHHH----HHHcCchhccccccccCCCCcC-
Confidence 4444566775554444432 15444432 2333 334445577655444 44444332 112233
Q ss_pred HHHHHHhcCCCHHHHHHHHccCCCCCh----------------hhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhh
Q 007288 153 LMDVYATCCISMDNARLVFNDMKWKND----------------VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYS 216 (609)
Q Consensus 153 ll~~~~~~g~~~~~A~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 216 (609)
.+...+..| +.+-+..+++.-...+. ..++. +...+..|+. ++++.+.+.|..++...
T Consensus 78 ~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~----~~v~~Ll~~ga~~~~~d 151 (232)
T 2rfa_A 78 ALHIAVINQ-NVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP-LSFAACVGSE----EIVRLLIEHGADIRAQD 151 (232)
T ss_dssp HHHHHHHTT-CHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSH-HHHHHHHTCH----HHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHcC-CHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCH-HHHHHHcCCH----HHHHHHHHCCCCCCCCC
Confidence 344445566 88887777776443322 12233 3334445554 34444555565554322
Q ss_pred --HHHHHHHHHccCCchhHHHHHHHHHHhCCCC
Q 007288 217 --FSIAVRACASTGWVSFGKLIHAAVIKHGFGS 247 (609)
Q Consensus 217 --~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~ 247 (609)
-.+.+...+..|+.+.+..+++.+.+.|..+
T Consensus 152 ~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 152 SLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp TTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred CCCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 1234555667778877777777777776433
No 331
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=30.18 E-value=2.6e+02 Score=23.93 Aligned_cols=22 Identities=9% Similarity=0.170 Sum_probs=11.4
Q ss_pred HHhCCChHHHHHHHHHHhccCC
Q 007288 492 CKEHRLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 492 ~~~~~~~~~a~~~~~~~~~~~p 513 (609)
|.+.|.+++|.+++++..+..|
T Consensus 124 Ciek~~f~kA~eiLkr~~~~~~ 145 (235)
T 3bu8_A 124 CIKNKEFEKASKILKKHMSKDP 145 (235)
T ss_dssp HHHTTCHHHHHHHHHHHSTTCG
T ss_pred HHHhcchHHHHHHHHHHhcCCC
Confidence 5555555555555555554433
No 332
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=29.47 E-value=53 Score=21.43 Aligned_cols=47 Identities=19% Similarity=0.061 Sum_probs=27.0
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCccc
Q 007288 503 LAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKE 550 (609)
Q Consensus 503 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 550 (609)
+..+.+.++.| +......-.-.-...|+.+.|+..+-.|...+..++
T Consensus 11 e~l~~L~emFP-~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 11 EDLKAIQDMFP-NMDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp HHHHHHHHHCS-SSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HHHHHHHHHCC-CCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCC
Confidence 44445556677 333333333333455788888888888776655544
No 333
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.39 E-value=1.2e+02 Score=30.29 Aligned_cols=61 Identities=13% Similarity=0.121 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhcCC-CCCh--hHHH-HHHHHHhhcCCHHHHHHHHHhC
Q 007288 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNV-NPNK--EIYG-CVVDLLGRAGRVKEAYELIKSM 476 (609)
Q Consensus 416 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~-~l~~~~~~~g~~~~A~~~~~~~ 476 (609)
..++.+++.|...+.++.|..+..+..-... .++. ..|. .+...+.-.+++.+|.+.+...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4677788888888888888888887631100 1111 1222 3455666778888887777664
No 334
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=27.64 E-value=1.2e+02 Score=24.57 Aligned_cols=43 Identities=2% Similarity=0.030 Sum_probs=18.9
Q ss_pred HHHHHccCCchhHHHHHHHHHHh--CCCCChhHHHHHHHHHHhcC
Q 007288 221 VRACASTGWVSFGKLIHAAVIKH--GFGSNLPVMNSILDMYCRFD 263 (609)
Q Consensus 221 l~~~~~~g~~~~a~~~~~~~~~~--g~~~~~~~~~~l~~~~~~~g 263 (609)
+..+...+..-.|.++++.+.+. +...+..|.-.-++.+.+.|
T Consensus 39 L~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 39 LKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 33344444444455555555444 43334333333344444444
No 335
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=27.36 E-value=94 Score=24.12 Aligned_cols=47 Identities=13% Similarity=0.052 Sum_probs=32.9
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCC
Q 007288 81 TVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKS 127 (609)
Q Consensus 81 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 127 (609)
..++..+...+.+-.|.++++.+.+.+...+..|..-.|..+...|-
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 35666676677778888888888887766666666666666655554
No 336
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=26.81 E-value=1.3e+02 Score=23.32 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=34.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCc
Q 007288 184 TLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230 (609)
Q Consensus 184 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 230 (609)
.++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|-+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 45666666667778888888888877777777777777777766644
No 337
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=26.44 E-value=3e+02 Score=23.44 Aligned_cols=47 Identities=17% Similarity=0.332 Sum_probs=34.1
Q ss_pred HHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 007288 383 WTSMMIGYG---AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429 (609)
Q Consensus 383 ~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 429 (609)
..-+|+++. +..+.+.|+-.+.+|++.|-.|....-..++.+...-|
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 334555553 56899999999999999988777766666666666555
No 338
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=25.61 E-value=2.8e+02 Score=23.89 Aligned_cols=49 Identities=10% Similarity=0.019 Sum_probs=32.8
Q ss_pred HHHHHHHHHhc--cCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 007288 500 LGKLAALRVLD--LKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSK 548 (609)
Q Consensus 500 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 548 (609)
.+..+|..+.. ++-.-...|...+..+...|++.+|.++|+.=++.+-.
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 44556665544 44455667777888888888888888888776665443
No 339
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=25.31 E-value=3.5e+02 Score=23.79 Aligned_cols=17 Identities=12% Similarity=-0.138 Sum_probs=7.1
Q ss_pred chhHHHHHHHHHHhcCC
Q 007288 348 NLALANALIDMYAKCGN 364 (609)
Q Consensus 348 ~~~~~~~l~~~~~~~g~ 364 (609)
+..+-...+.++.+.|+
T Consensus 205 ~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 205 NEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp CHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 33333344444444443
No 340
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=25.16 E-value=67 Score=20.94 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=20.3
Q ss_pred chHHHHHHHHhHHCCCCCCHHhHHHHHHHH
Q 007288 295 SSECLNMFSKMKSERFSPNCFTFTSIIAAC 324 (609)
Q Consensus 295 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 324 (609)
.++|.+.|.+|+...-.+...||...+..+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 467778888877654445556777777766
No 341
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=24.89 E-value=1.9e+02 Score=26.95 Aligned_cols=25 Identities=16% Similarity=0.060 Sum_probs=17.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC
Q 007288 453 YGCVVDLLGRAGRVKEAYELIKSMP 477 (609)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~~~ 477 (609)
...++..+.+....+.+.++|.+.+
T Consensus 144 l~~vl~~l~~~~g~~~l~~~~~~s~ 168 (339)
T 1ug3_A 144 LLEILGLLCKSMGPKKVGTLWREAG 168 (339)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHcC
Confidence 4445666677777788888887763
No 342
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.63 E-value=1.9e+02 Score=28.85 Aligned_cols=66 Identities=9% Similarity=0.047 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHh------hHHH-HHHHHHhCCChHHHHHHHHHHhccCCCC
Q 007288 450 KEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDES------VWGP-LLGACKEHRLPNLGKLAALRVLDLKPNM 515 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~------~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 515 (609)
...+|.++..|...+.++.|..+..+..+..... .|.- +...+.-++++.+|.+.+..++..-|.+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 4567777777888888888888887774322211 2221 2244666777777777777777766644
No 343
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.38 E-value=1e+02 Score=24.63 Aligned_cols=58 Identities=7% Similarity=-0.010 Sum_probs=24.1
Q ss_pred HHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcC
Q 007288 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC 161 (609)
Q Consensus 103 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 161 (609)
+.+.|++++..-. .++..+...+..-.|.++++.+.+.++..+..|.-..+..+...|
T Consensus 18 l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 4444544333322 222333333334445555555555544444444444444444444
No 344
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.97 E-value=88 Score=24.63 Aligned_cols=46 Identities=9% Similarity=-0.017 Sum_probs=28.8
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCC
Q 007288 81 TVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMK 126 (609)
Q Consensus 81 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 126 (609)
..++..+...+.+-.|.++++.+.+.+...+..|..-.|..+...|
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3566666666667778888888877766666665544444444444
No 345
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.68 E-value=1.1e+02 Score=23.95 Aligned_cols=46 Identities=7% Similarity=0.008 Sum_probs=29.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 007288 184 TLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229 (609)
Q Consensus 184 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 229 (609)
.++..+...+..-.|.++++.+.+.+...+..|..-.|..+...|-
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 4455555555666777777777777666677776666666655553
No 346
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.67 E-value=87 Score=25.50 Aligned_cols=58 Identities=7% Similarity=-0.032 Sum_probs=33.1
Q ss_pred HHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHh--CCCCCcchhhHHHHHHHhcC
Q 007288 103 MVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKE--GLEGSIYVENSLMDVYATCC 161 (609)
Q Consensus 103 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g 161 (609)
+.+.|++++..- ..++..+...+..-.|.++++.+.+. ++..+..|.-.-+..+...|
T Consensus 24 L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 24 LRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 344566654433 33445555555666677777777666 55555555444555666555
No 347
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=23.44 E-value=5.2e+02 Score=25.11 Aligned_cols=104 Identities=9% Similarity=-0.040 Sum_probs=58.3
Q ss_pred CCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCC----CcchhhHHHHHHHhcCCCHHHHHHHHccCCC---CChhh
Q 007288 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEG----SIYVENSLMDVYATCCISMDNARLVFNDMKW---KNDVS 181 (609)
Q Consensus 109 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~---~~~~~ 181 (609)
..+......++.. ..|+...+..+++.+....... ... ..+...+++..... ++...
T Consensus 191 ~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~I--------------t~e~v~~~l~~~~~~~dk~gd~ 254 (447)
T 3pvs_A 191 VLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVL--------------KPELLTEIAGERSARFDNKGDR 254 (447)
T ss_dssp ECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEEC--------------CHHHHHHHHTCCCCC---CCHH
T ss_pred cCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCcc--------------CHHHHHHHHhhhhhccCCccch
Confidence 3445555555554 3577777777777766543211 111 33444444443321 23333
Q ss_pred HHHHHHHHH---hcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC
Q 007288 182 WTTLITGYA---HSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228 (609)
Q Consensus 182 ~~~li~~~~---~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 228 (609)
+..++.++. +.++.+.|+..+..|.+.|..|....-..+..+.-.-|
T Consensus 255 ~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 255 FYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 444555554 35789999999999999888766555555555444434
No 348
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=22.67 E-value=1.5e+02 Score=25.87 Aligned_cols=26 Identities=8% Similarity=-0.101 Sum_probs=13.9
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCC
Q 007288 86 GYTSFNCHNQAWTVFVEMVRNEVNPN 111 (609)
Q Consensus 86 ~~~~~~~~~~a~~~~~~m~~~g~~p~ 111 (609)
..++.|+.+.+..+++.+.+.|..++
T Consensus 8 ~A~~~g~~~~v~~ll~~l~~~g~~i~ 33 (256)
T 2etb_A 8 SVVSRGVPEELTGLLEYLRWNSKYLT 33 (256)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcc
Confidence 33455666655555655555554443
No 349
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=22.50 E-value=1.3e+02 Score=21.93 Aligned_cols=38 Identities=8% Similarity=0.123 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHH
Q 007288 363 GNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400 (609)
Q Consensus 363 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 400 (609)
...+.|.++++.+..+...+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 45777888888888887788888888887666655443
No 350
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=22.46 E-value=1.7e+02 Score=23.17 Aligned_cols=44 Identities=7% Similarity=-0.019 Sum_probs=23.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC
Q 007288 184 TLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG 228 (609)
Q Consensus 184 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 228 (609)
.++..+...+ .-.|.++++.+.+.+...+..|..-.|..+...|
T Consensus 23 ~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 23 LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3444444444 5566666666666555555555554455444444
No 351
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=22.25 E-value=3.5e+02 Score=22.76 Aligned_cols=44 Identities=11% Similarity=0.164 Sum_probs=31.5
Q ss_pred HHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 007288 386 MMIGY---GAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429 (609)
Q Consensus 386 li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 429 (609)
+|+++ .+..+.+.|+-.+.+|++.|-.|....-..++.+...-|
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 44554 356889999999999999887776666666666655554
No 352
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=21.79 E-value=1.3e+02 Score=23.47 Aligned_cols=150 Identities=9% Similarity=0.007 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCC---ChhhHHHHHHHHHh
Q 007288 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK---NDVSWTTLITGYAH 191 (609)
Q Consensus 115 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~ 191 (609)
....+...+..|+.+.+..+++. ....+........+.+.. +..| +.+-+..+++.-... |...++.|..+...
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~-~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 78 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFG-STAIALELLKQGASPNVQDTSGTSPVHDAART 78 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTT-CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred cchHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcC-CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc
Q ss_pred cCChhhHHHHHHHHHHCCCCCC--HhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHH
Q 007288 192 SGNGYGGLGVFKEMLLEGVEMN--PYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDAN 269 (609)
Q Consensus 192 ~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 269 (609)
.-.++++.+.+.|..++ ...-.+.+...+..|+.+-+..+++. ..+......-.+-+...++.|+.+-+.
T Consensus 79 -----~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~g~t~l~~A~~~~~~~~v~ 150 (156)
T 1bd8_A 79 -----GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE---SDLHRRDARGLTPLELALQRGAQDLVD 150 (156)
T ss_dssp -----TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT---SCTTCCCTTSCCHHHHHHHSCCHHHHH
T ss_pred -----CcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc---cCCCCcCCCCCCHHHHHHHcCcHHHHH
Q ss_pred HHHHhc
Q 007288 270 QYFDEM 275 (609)
Q Consensus 270 ~~~~~~ 275 (609)
-+++.+
T Consensus 151 ~Ll~~~ 156 (156)
T 1bd8_A 151 ILQGHM 156 (156)
T ss_dssp HHHTTC
T ss_pred HHHhhC
No 353
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=21.75 E-value=3.5e+02 Score=22.52 Aligned_cols=112 Identities=11% Similarity=0.070 Sum_probs=50.0
Q ss_pred HHHHHHHccCChhHHHHhhccCCCCC---cccHHHHHHHHHcCCChhHHHHHHHHHHHCCC-CC---CcchHHHHHHHhh
Q 007288 51 NLIKSYFDEGLIEEARTLFDEMPERD---VVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV-NP---NAFTLSSVLKACK 123 (609)
Q Consensus 51 ~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p---~~~t~~~ll~~~~ 123 (609)
+.+...++.|+.+-+..+++.-..++ ..-++. +...+..|+.+-+ +.+.+.+. .+ +....+.+..+ +
T Consensus 27 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v----~~Ll~~~~~~~~~~~~~g~t~L~~A-~ 100 (223)
T 2f8y_A 27 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTP-LHAAVSADAQGVF----QILIRNRATDLDARMHDGTTPLILA-A 100 (223)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHHHH----HHHHHBTTSCTTCCCTTCCCHHHHH-H
T ss_pred chHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH-HHHHHHcCCHHHH----HHHHHcCCCCcccCCCCCCcHHHHH-H
Confidence 45556667788777777776543332 222233 3333455554433 33333322 11 12222222222 2
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCcch--hhHHHHHHHhcCCCHHHHHHHHcc
Q 007288 124 GMKSLSNAALVHGMAIKEGLEGSIYV--ENSLMDVYATCCISMDNARLVFND 173 (609)
Q Consensus 124 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~~A~~~~~~ 173 (609)
..|+.+ +++.+++.|..++... ..+.+...+..| +.+-+..+++.
T Consensus 101 ~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~ 147 (223)
T 2f8y_A 101 RLAVEG----MLEDLINSHADVNAVDDLGKSALHWAAAVN-NVDAAVVLLKN 147 (223)
T ss_dssp HHTCHH----HHHHHHHTTCCTTCBCTTSCBHHHHHHHTT-CHHHHHHHHHT
T ss_pred HhCcHH----HHHHHHHcCCCCcCcCCCCCcHHHHHHHcC-CHHHHHHHHHc
Confidence 334433 4444555555443321 122333344455 66665555554
No 354
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=21.35 E-value=30 Score=26.48 Aligned_cols=70 Identities=7% Similarity=-0.021 Sum_probs=50.8
Q ss_pred HHHccCChhHHHHhhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHH
Q 007288 55 SYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAA 132 (609)
Q Consensus 55 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 132 (609)
.|.+.+++++++.+..+ -..|--.|...+..++.+-|.++++-..+.| +...|.+.+-.|-..=+++-+.
T Consensus 15 ~ykkN~rw~qSI~L~Kk-----DkLykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVL 84 (125)
T 3qil_A 15 VPRGSHMWKQSVELAKK-----DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVL 84 (125)
T ss_dssp CSSSCCCCSSCCCCCSC-----CCCSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHH
T ss_pred hhhccccHHHHHHHHHh-----cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHH
Confidence 46677888877665543 2357777888888889999999998888766 6677777777777666666544
No 355
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=21.26 E-value=4.7e+02 Score=23.85 Aligned_cols=63 Identities=16% Similarity=0.198 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhCC---chHHHHHHHHhHHCCCCCCHH
Q 007288 253 NSILDMYCRFDCLSDANQYFDEMTEKD---LITWNTIIAGYEKSG---SSECLNMFSKMKSERFSPNCF 315 (609)
Q Consensus 253 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~---~~~a~~~~~~m~~~~~~p~~~ 315 (609)
+.++.-|...|+.++|...++++..|. ......+..++-+.+ .+....++..+...|+-+...
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 457777888899999999999998762 234445555555542 455667888887766554443
No 356
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=21.17 E-value=1e+02 Score=24.41 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=17.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcch
Q 007288 80 WTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFT 114 (609)
Q Consensus 80 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t 114 (609)
-..++..+...+ +-.|.++++.+.+.+...+..|
T Consensus 21 R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~T 54 (145)
T 3eyy_A 21 RQLVLEAVDTLE-HATPDDILGEVRKTASGINIST 54 (145)
T ss_dssp HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhH
Confidence 334444444444 5566666666665554444444
No 357
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=20.63 E-value=4.9e+02 Score=23.84 Aligned_cols=47 Identities=11% Similarity=0.094 Sum_probs=33.9
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCC
Q 007288 200 GVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFG 246 (609)
Q Consensus 200 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 246 (609)
++++.+.+.|+.|...++..++..++..=.++.+.++++.+...|..
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~ 255 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTE 255 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcH
Confidence 45566666777777777777777777766777788888877777643
Done!