BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007289
(609 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Query: 72 TSFTGLVKLVESTVRSESNRSPKRPVYLVGESLGACIALAVAARNPDIDLVLILVNP--- 128
+ F V+ V V S P PV+L+G S+G IA+ AA P ++L++P
Sbjct: 109 SDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVL 168
Query: 129 -----ATSFN---KSVLQSTIPLLELIP 148
AT+F VL +P L L P
Sbjct: 169 ANPESATTFKVLAAKVLNLVLPNLSLGP 196
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Query: 72 TSFTGLVKLVESTVRSESNRSPKRPVYLVGESLGACIALAVAARNPDIDLVLILVNP--- 128
+ F V+ V V S P PV+L+G S+G IA+ AA P ++L++P
Sbjct: 91 SDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVL 150
Query: 129 -----ATSFN---KSVLQSTIPLLELIP 148
AT+F VL S +P L P
Sbjct: 151 ANPESATTFKVLAAKVLNSVLPNLSSGP 178
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Query: 72 TSFTGLVKLVESTVRSESNRSPKRPVYLVGESLGACIALAVAARNPDIDLVLILVNP--- 128
+ F V+ V V S P PV+L+G S+G IA+ AA P ++L++P
Sbjct: 108 SDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVL 167
Query: 129 -----ATSFN---KSVLQSTIPLLELIP 148
AT+F VL +P L L P
Sbjct: 168 ANPESATTFKVLAAKVLNLVLPNLSLGP 195
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 72 TSFTGLVKLVESTVRSESNRSPKRPVYLVGESLGACIALAVAARNPD------IDLVLIL 125
+ F V+ V V S P PV+L+G S G IA+ AA P + L+L
Sbjct: 108 SDFHVFVRDVLQHVDSXQKDYPGLPVFLLGHSXGGAIAILTAAERPGHFAGXVLISPLVL 167
Query: 126 VNP--ATSFN---KSVLQSTIPLLELIP 148
NP AT+F VL +P L L P
Sbjct: 168 ANPESATTFKVLAAKVLNLVLPNLSLGP 195
>pdb|3CAZ|A Chain A, Crystal Structure Of A Bar Protein From Galdieria
Sulphuraria
pdb|3CAZ|B Chain B, Crystal Structure Of A Bar Protein From Galdieria
Sulphuraria
Length = 294
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 165 DPLKMAMDNVAKRLSLQPTIQDLSQDLV-ALSSYLPVLADILPKETLLWKIEL---LKAA 220
D K+ +DN+ K+ Q I+ Q A ++Y V AD++ K +WK + +AA
Sbjct: 132 DHYKVKLDNLEKKNKDQERIERNQQKFKDAEAAYSSVCADLIQKXETVWKKHVSIFAEAA 191
Query: 221 SAYANSRLHAVKA 233
SA +++L KA
Sbjct: 192 SAVWSTQLQYAKA 204
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 95 RPVYLVGESLGACIALAVAARNPDIDLVLILVNPATSFNKSVLQSTIPLLELIPGQI 151
R +YLVG S G +A +A PD+ ++L+ PA + L+ + P I
Sbjct: 119 RNIYLVGHSQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEGNTQGVTYNPDHI 175
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 95 RPVYLVGESLGACIALAVAARNPDIDLVLILVNPATSFNKSVLQSTIPLLELIPGQI 151
R +YLVG + G +A +A PD+ ++L+ PA + L+ + P I
Sbjct: 119 RNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEGNTQGVTYNPDHI 175
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 95 RPVYLVGESLGACIALAVAARNPDIDLVLILVNPATSFNKSVLQSTIPLLELIPGQI 151
R +YLVG + G +A +A PD+ ++L+ PA + L+ + P I
Sbjct: 119 RNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEGNTQGVTYNPDHI 175
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 93 PKRPVYLVGESLGACIALAVAARNPDIDLVLILV 126
P +P+ LVG S+GA +A A+A+ P LILV
Sbjct: 93 PDQPLLLVGHSMGAMLATAIASVRPKKIKELILV 126
>pdb|1B63|A Chain A, Mutl Complexed With Adpnp
pdb|1NHH|A Chain A, Crystal Structure Of N-Terminal 40kd Mutl Protein (Ln40)
Complex With Adpnp And One Rubidium
pdb|1NHI|A Chain A, Crystal Structure Of N-Terminal 40kd Mutl (Ln40) Complex
With Adpnp And One Potassium
Length = 333
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 304 FMPPTSSEFNKICEDFRWMRVLSSPVMLSTLANGKIVRGLSGIPSEG 350
F+ +EFN I E R + + V ++ NGKIVR +P G
Sbjct: 162 FLRTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQYRAVPEGG 208
>pdb|1NHJ|A Chain A, Crystal Structure Of N-Terminal 40kd MutlA100P MUTANT
PROTEIN COMPLEX With Adpnp And One Sodium
Length = 333
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 304 FMPPTSSEFNKICEDFRWMRVLSSPVMLSTLANGKIVRGLSGIPSEG 350
F+ +EFN I E R + + V ++ NGKIVR +P G
Sbjct: 162 FLRTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQYRAVPEGG 208
>pdb|1BKN|A Chain A, Crystal Structure Of An N-Terminal 40kd Fragment Of E.
Coli Dna Mismatch Repair Protein Mutl
pdb|1BKN|B Chain B, Crystal Structure Of An N-Terminal 40kd Fragment Of E.
Coli Dna Mismatch Repair Protein Mutl
Length = 352
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 304 FMPPTSSEFNKICEDFRWMRVLSSPVMLSTLANGKIVRGLSGIPSEG 350
F+ +EFN I E R + + V ++ NGKIVR +P G
Sbjct: 163 FLRTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQYRAVPEGG 209
>pdb|1B62|A Chain A, Mutl Complexed With Adp
Length = 355
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 304 FMPPTSSEFNKICEDFRWMRVLSSPVMLSTLANGKIVRGLSGIPSEG 350
F+ +EFN I E R + + V ++ NGKIVR +P G
Sbjct: 166 FLRTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQYRAVPEGG 212
>pdb|4AIM|A Chain A, Crystal Structure Of C. Crescentus Pnpase Bound To Rnase E
Recognition Peptide
Length = 726
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 526 YPVPKVPGRFYFYFGKPIETKGRKRELRDREKAHELYLEIKSEVEKCLAYLKEKRENDP 584
+ K+PG F+ G+P E + L DR K+EV+ + L+ ENDP
Sbjct: 82 FAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLQHDLENDP 140
>pdb|4AID|A Chain A, Crystal Structure Of C. Crescentus Pnpase Bound To Rnase E
Recognition Peptide
pdb|4AID|B Chain B, Crystal Structure Of C. Crescentus Pnpase Bound To Rnase E
Recognition Peptide
pdb|4AID|C Chain C, Crystal Structure Of C. Crescentus Pnpase Bound To Rnase E
Recognition Peptide
Length = 726
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 526 YPVPKVPGRFYFYFGKPIETKGRKRELRDREKAHELYLEIKSEVEKCLAYLKEKRENDP 584
+ K+PG F+ G+P E + L DR K+EV+ + L+ ENDP
Sbjct: 82 FAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLQHDLENDP 140
>pdb|4AM3|A Chain A, Crystal Structure Of C. Crescentus Pnpase Bound To Rna
pdb|4AM3|B Chain B, Crystal Structure Of C. Crescentus Pnpase Bound To Rna
pdb|4AM3|C Chain C, Crystal Structure Of C. Crescentus Pnpase Bound To Rna
Length = 717
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 526 YPVPKVPGRFYFYFGKPIETKGRKRELRDREKAHELYLEIKSEVEKCLAYLKEKRENDP 584
+ K+PG F+ G+P E + L DR K+EV+ + L+ ENDP
Sbjct: 73 FAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLQHDLENDP 131
>pdb|2XFL|A Chain A, Induced-Fit And Allosteric Effects Upon Polyene Binding
Revealed By Crystal Structures Of The Dynemicin
Thioesterase
pdb|2XFL|B Chain B, Induced-Fit And Allosteric Effects Upon Polyene Binding
Revealed By Crystal Structures Of The Dynemicin
Thioesterase
pdb|2XFL|C Chain C, Induced-Fit And Allosteric Effects Upon Polyene Binding
Revealed By Crystal Structures Of The Dynemicin
Thioesterase
pdb|2XFL|D Chain D, Induced-Fit And Allosteric Effects Upon Polyene Binding
Revealed By Crystal Structures Of The Dynemicin
Thioesterase
pdb|2XFL|E Chain E, Induced-Fit And Allosteric Effects Upon Polyene Binding
Revealed By Crystal Structures Of The Dynemicin
Thioesterase
pdb|2XFL|F Chain F, Induced-Fit And Allosteric Effects Upon Polyene Binding
Revealed By Crystal Structures Of The Dynemicin
Thioesterase
pdb|2XFL|G Chain G, Induced-Fit And Allosteric Effects Upon Polyene Binding
Revealed By Crystal Structures Of The Dynemicin
Thioesterase
pdb|2XFL|H Chain H, Induced-Fit And Allosteric Effects Upon Polyene Binding
Revealed By Crystal Structures Of The Dynemicin
Thioesterase
Length = 142
Score = 29.3 bits (64), Expect = 6.5, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 276 LEDGVDLVTIIKGASYYRRGRNHDYVSDFMPPTSSEFNKICEDFRWMRVLSSPVMLSTLA 335
L DG+ LVT+ A +Y G D V M + ++I F ++RV P L LA
Sbjct: 48 LADGLALVTVDCHADFYAEGSAFDEVEVRMMLDRLDGHRIAMSFDYVRVAPGPPTL--LA 105
Query: 336 NGK 338
G+
Sbjct: 106 QGR 108
>pdb|2XEM|A Chain A, Induced-Fit And Allosteric Effects Upon Polyene Binding
Revealed By Crystal Structures Of The Dynemicin
Thioesterase
pdb|2XEM|B Chain B, Induced-Fit And Allosteric Effects Upon Polyene Binding
Revealed By Crystal Structures Of The Dynemicin
Thioesterase
pdb|2XEM|C Chain C, Induced-Fit And Allosteric Effects Upon Polyene Binding
Revealed By Crystal Structures Of The Dynemicin
Thioesterase
pdb|2XEM|D Chain D, Induced-Fit And Allosteric Effects Upon Polyene Binding
Revealed By Crystal Structures Of The Dynemicin
Thioesterase
Length = 150
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 276 LEDGVDLVTIIKGASYYRRGRNHDYVSDFMPPTSSEFNKICEDFRWMRVLSSPVMLSTLA 335
L DG+ LVT+ A +Y G D V M + ++I F ++RV P L LA
Sbjct: 56 LADGLALVTVDCHADFYAEGSAFDEVEVRMMLDRLDGHRIAMSFDYVRVAPGPPTL--LA 113
Query: 336 NGK 338
G+
Sbjct: 114 QGR 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,340,155
Number of Sequences: 62578
Number of extensions: 717321
Number of successful extensions: 1540
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1524
Number of HSP's gapped (non-prelim): 22
length of query: 609
length of database: 14,973,337
effective HSP length: 105
effective length of query: 504
effective length of database: 8,402,647
effective search space: 4234934088
effective search space used: 4234934088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)