Query 007291
Match_columns 609
No_of_seqs 252 out of 1072
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 21:35:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007291.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007291hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02258 9-cis-epoxycarotenoid 100.0 1E-148 3E-153 1243.4 60.1 554 43-609 36-590 (590)
2 PLN02491 carotenoid 9,10(9',10 100.0 3E-135 7E-140 1131.8 51.8 501 95-609 20-543 (545)
3 COG3670 Lignostilbene-alpha,be 100.0 1E-115 3E-120 923.7 33.8 447 131-604 21-490 (490)
4 PF03055 RPE65: Retinal pigmen 100.0 2E-109 5E-114 918.8 39.4 455 133-602 1-486 (486)
5 PLN02969 9-cis-epoxycarotenoid 100.0 8E-104 2E-108 890.5 44.7 452 132-602 60-610 (610)
6 KOG1285 Beta, beta-carotene 15 100.0 6.9E-90 1.5E-94 760.4 26.0 510 92-609 68-582 (582)
7 KOG1285 Beta, beta-carotene 15 100.0 2.9E-29 6.3E-34 278.7 25.5 287 147-444 36-353 (582)
8 PF10282 Lactonase: Lactonase, 76.8 1.1E+02 0.0024 32.7 25.0 99 263-368 47-162 (345)
9 PF02239 Cytochrom_D1: Cytochr 74.4 23 0.00049 38.7 10.5 75 495-588 45-119 (369)
10 PF06433 Me-amine-dh_H: Methyl 72.8 1.5E+02 0.0032 32.3 20.6 231 298-590 32-290 (342)
11 COG2706 3-carboxymuconate cycl 62.5 2.4E+02 0.0051 30.8 25.2 269 264-586 51-344 (346)
12 TIGR02658 TTQ_MADH_Hv methylam 35.7 6.2E+02 0.013 27.7 26.0 246 274-590 27-300 (352)
13 PF02239 Cytochrom_D1: Cytochr 30.9 82 0.0018 34.4 5.4 86 485-589 272-359 (369)
14 PF10282 Lactonase: Lactonase, 27.4 7.7E+02 0.017 26.2 19.6 77 455-542 266-343 (345)
15 KOG0303 Actin-binding protein 27.1 99 0.0021 34.2 5.0 67 255-337 230-296 (472)
16 COG3823 Glutamine cyclotransfe 27.0 45 0.00097 34.0 2.3 37 259-298 95-132 (262)
17 PF05096 Glu_cyclase_2: Glutam 26.9 2.3E+02 0.0049 29.8 7.5 35 552-588 129-168 (264)
18 TIGR02276 beta_rpt_yvtn 40-res 26.5 1.3E+02 0.0028 21.1 4.2 28 567-595 12-39 (42)
19 PF05096 Glu_cyclase_2: Glutam 25.4 1.4E+02 0.0029 31.4 5.6 90 462-568 153-244 (264)
20 PF02897 Peptidase_S9_N: Proly 25.1 8.9E+02 0.019 26.1 13.2 103 459-579 151-262 (414)
21 PRK11028 6-phosphogluconolacto 22.4 8.2E+02 0.018 25.3 11.0 93 266-367 48-143 (330)
22 TIGR02658 TTQ_MADH_Hv methylam 21.8 4E+02 0.0087 29.1 8.6 82 500-590 14-98 (352)
23 TIGR03866 PQQ_ABC_repeats PQQ- 21.5 5.4E+02 0.012 25.3 9.1 78 498-594 218-295 (300)
24 PF13360 PQQ_2: PQQ-like domai 21.0 2.9E+02 0.0062 26.8 6.8 65 513-590 3-67 (238)
No 1
>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED
Probab=100.00 E-value=1.2e-148 Score=1243.35 Aligned_cols=554 Identities=79% Similarity=1.276 Sum_probs=510.5
Q ss_pred CCccceecccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhhc-ccCCC
Q 007291 43 NKSLKVESALHSPSVLHFPKQPYPNPVITRPDSTAKPDNKSNKSQGQTQQSQWNPLQRAAAMALDMAENALVSR-ERQHP 121 (609)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 121 (609)
++...++|.+++|+++++|+++.+...... .... ....+++||++|++|+++||++|+.|+++ |..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (590)
T PLN02258 36 RRKPSASSLLHTPSILPLPKLSSPSPPSVT-----LPPA------ATTQTPQLNPLQRAAAAALDAVESALVSHLERQHP 104 (590)
T ss_pred CCCcccccccCCCCCCCCCccCCCCCcccc-----cccc------ccCCccccCcchhhHHHHHHHHHHHHhhhccccCC
Confidence 455668899999999999988633211111 0111 12355789999999999999999999998 88899
Q ss_pred CCCCCCCccccccCCcCCCCCCCcccceEeeecCCCCceEEEeecCCCCcCCCCCCcCccCCCceEEEEEcCCceeeeee
Q 007291 122 LPKTADPRVQIGGNFAPVPERPVRHGLPVTGSIPECINGVYLRNGANPLFEPVAGHHFFDGDGMVHAVTIGNGSASYACR 201 (609)
Q Consensus 122 ~~~~~~p~~~l~g~fapv~ee~~~~~L~V~G~IP~~L~G~~~RNGPnp~f~p~~~~H~FDGDGMvha~~f~~G~a~y~~R 201 (609)
||+++||++||+|||+|++||++..+|+|+|+||+||+|+||||||||+|++..++||||||||||+|+|+||+|+|+||
T Consensus 105 ~~~~~~~~~~l~g~faPv~ee~~~~~l~V~G~IP~~L~Gty~RNGPnp~f~p~~~~H~FDGDGMvhav~f~dG~a~y~~R 184 (590)
T PLN02258 105 LPKTADPAVQIAGNFAPVPEQPVRHNLPVTGRIPDCIDGVYVRNGANPLFEPVAGHHLFDGDGMVHAVRIGNGSASYACR 184 (590)
T ss_pred CCCCCCcceeccCCCcCccccCCcccceEEeeCCCCCCeEEEEeCCCCCCCCCCCCccccCCceEEEEEECCCeEEEEee
Confidence 99999999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred eecchHHHHHHHcCCCcccccccccCCCCchhhhHHhhhhccccccCCCCCCccceeeeeeeCCeEEEEEcCCccEEEec
Q 007291 202 FTETQRLMQERELGRPVFPKAIGELHGHNGIGRLLLFYARGLFGLVDHKQGTGVANAGLVYFNNRILAMSEDDLPYQVRI 281 (609)
Q Consensus 202 fV~T~~~~~E~~~Gr~~~~~~~g~~~g~~g~ar~~~~~~r~~~g~~~~~~~~~~ANT~vv~~~grLlAl~E~g~Py~ldi 281 (609)
||||++|++|+++||++|++.+|++++++|++|..++++|.++|.++..+++|+|||+|++|+||||||||+|+||+|++
T Consensus 185 fVrT~~~~~E~~agr~l~~~~~g~~~~~~g~~r~~~~~~r~~~~~~d~~~~~~~ANT~vv~~~grLlAL~E~g~Py~l~~ 264 (590)
T PLN02258 185 FTETNRLVQERALGRPVFPKAIGELHGHSGIARLMLFYARGLFGLVDASRGTGVANAGLVYFNGRLLAMSEDDLPYQVRI 264 (590)
T ss_pred eecchhHHHHHhcCCcccccccccccccccccccchhhccccccccccccccCCCceeEEEECCEEEEEEcCCCceEecC
Confidence 99999999999999999998899999999999999888998888888777899999999999999999999999999998
Q ss_pred CCCCCcccceeecccCccccccccCCeecCCCCeeEEEEeeeccCCcEEEEEEcCCCCCcceEEEeCCccccccccccCC
Q 007291 282 TPSGDLETVGRYNFNHQLKSTMIAHPKVDPVSKELFALSYDVVQKPYLKYFRFSADGDKSPDVEIHLPVPTMMHDFAITE 361 (609)
Q Consensus 282 ~p~~tLeT~G~~df~g~L~~~~tAHPk~Dp~TGel~~f~y~~~~~p~l~~~~~d~~G~~~~~~~i~~~~p~~~HDFaiTe 361 (609)
+|++||||+|++||+|+|..+||||||+||.|||||+|+|++.++|+++||++|++|++.+.++|+++.++|||||||||
T Consensus 265 d~~~TLeT~G~~df~g~l~~~ftAHPKvDP~TGel~~f~y~~~~~p~l~~~~~d~~G~~~~~~~i~lp~p~~~HDFaiTe 344 (590)
T PLN02258 265 TGDGDLETVGRYDFDGQLDSSMIAHPKVDPVTGELFALSYDVVKKPYLKYFRFSPDGEKSPDVEIPLDQPTMMHDFAITE 344 (590)
T ss_pred CCCCCcccCcccccCCccCcccccCceEcCCCCeEEEEEEeccCCCcEEEEEECCCCCEEeeEEeeCCCCccccceeccC
Confidence 87679999999999999988999999999999999999999877899999999999999999999999999999999999
Q ss_pred CeEEEecCCccccHHHHhcCCCCeeecCCCCeEEEEEeCcCCCCCceEEEecCceeEEeccccccCCCCCcEEEEEeecC
Q 007291 362 NFVVIPDQQVVFKLQEMITGGSPVIYDKNKKSRFGILAKNAKDSNDIIWIESPDTFCFHLWNAWEEPETDEIVVIGSCMT 441 (609)
Q Consensus 362 nYvV~~d~p~~~~~~~m~~g~~~~~~d~~~~tr~~VipR~~~~~~~v~w~e~p~~f~fH~~NA~Ee~~~~~vVv~~~~~~ 441 (609)
||+||+++|+++++.+|+.|++++.||+++++|||||||++++.+++|||++|+||+||++|||||+++|+||+++||+.
T Consensus 345 nY~Vf~d~Pl~~~~~~~~~g~~~~~~d~~~~srfgVipR~~~~~~~irwfe~p~~f~fH~~NA~Ee~~~~~VVvd~~~~~ 424 (590)
T PLN02258 345 NFVVIPDQQVVFKLSEMIRGGSPVVYDKNKTSRFGVLPKNATDASEIQWVEVPDCFCFHLWNAWEEPETDEVVVIGSCMT 424 (590)
T ss_pred ceEEEEccCceEcHHHHhhCCCceEECCCCCcEEEEEECCCCCCCceEEEecCCcEEEecccccccCCCCeEEEEEeccc
Confidence 99999999999999999999999999999999999999998777789999999999999999999865678999999998
Q ss_pred CCcchhhhccccccCceEEEEEeCCCCCeeEEEeeccCCcccccCcccCCccCCCCCceEEEeeccCCCCcCcEEEEecC
Q 007291 442 PADSIFNECDESLKSVLSEIRLNLKTGESTRRQILSESDQVNLEAGMVNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLS 521 (609)
Q Consensus 442 ~~d~~~~~~~~~l~~~l~r~ridl~tG~~~~~~l~~~~~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~p~~~~~givK~Dl~ 521 (609)
+.+.+++...+.++++|+||||||+||+++++++.+ +++.++|||+||++|.||+|||+|+++.+++++++||+|+|++
T Consensus 425 ~~~~~~~~~~~~~~~~L~r~ridl~tg~~~~~~l~~-~~~~~~EFP~In~~~~Grk~Ry~Y~~~~~~~~~~~givK~Dl~ 503 (590)
T PLN02258 425 PPDSIFNESDESLRSVLSEIRLNLRTGESTRRPIIS-GEQVNLEAGMVNRNLLGRKTRYAYLAIAEPWPKVSGFAKVDLS 503 (590)
T ss_pred ChhhhcccccccccceEEEEEEECCCCceeeeEeec-CCCcccccceECHHHCCCccceEEEeccCCCCCCCeEEEEECC
Confidence 877777766567889999999999999999988873 1137999999999999999999999998888899999999999
Q ss_pred CCCeEEEEcCCCccCCccEeeecCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCCeeEEEEcCCcCCCCccccccc
Q 007291 522 SGEVKKYFYGDNKYGGEPFFLPRDANNSENEDDGYILAFVHDEKTWKSELQIVNAMNLQLEASIKLPSRVPYGFHGTFVD 601 (609)
Q Consensus 522 tg~~~~~~~g~g~~~gEPvFVPr~~~~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~~l~~VArv~LP~rVP~GFHG~fv~ 601 (609)
+|+++.|++|+|+|+|||+||||+++ +.+|||||||++|||+++++|+|+||||++|++||||+||+||||||||+|++
T Consensus 504 tg~~~~~~~g~g~~~gEPvFVPr~~~-~~~EDDGylls~V~d~~~~~SeL~IlDA~~l~~VArv~LP~rVP~GFHG~wv~ 582 (590)
T PLN02258 504 TGEVKKYIYGEGRYGGEPFFVPRGSG-SEAEDDGYILAFVHDEEKGKSELQVVNAVNLELEATVKLPSRVPYGFHGTFIS 582 (590)
T ss_pred CCcEEEEECCCCccccCCEeccCCCC-CcccCCcEEEEEEEECCCCceEEEEEeCCCCcccEEEECCCCCCCcccccccC
Confidence 99999999999999999999999963 33599999999999999999999999999999999999999999999999999
Q ss_pred CcchhccC
Q 007291 602 SKDLVNQA 609 (609)
Q Consensus 602 ~~~l~~q~ 609 (609)
++||++|+
T Consensus 583 ~~~l~~q~ 590 (590)
T PLN02258 583 AEDLLKQA 590 (590)
T ss_pred HHHHhhcC
Confidence 99999995
No 2
>PLN02491 carotenoid 9,10(9',10')-cleavage dioxygenase
Probab=100.00 E-value=3.1e-135 Score=1131.80 Aligned_cols=501 Identities=39% Similarity=0.706 Sum_probs=458.0
Q ss_pred CChhHHHHHHHHHHHHHHhhhcccCCCCCCCCCCccccccCCcCCCCCC-CcccceEeeecCCCCceEEEeecCCCCcCC
Q 007291 95 WNPLQRAAAMALDMAENALVSRERQHPLPKTADPRVQIGGNFAPVPERP-VRHGLPVTGSIPECINGVYLRNGANPLFEP 173 (609)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~g~fapv~ee~-~~~~L~V~G~IP~~L~G~~~RNGPnp~f~p 173 (609)
=|++|++|++++|++|+.|+++ +++++||+++|+|||+|+.+|. +..+|+|+|+||+||+|+||||||||+|.+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~g~fapv~~E~~~~~~l~V~G~IP~~L~Gt~~RNGPnp~~~~ 94 (545)
T PLN02491 20 PRPSKGLTSKAVDLLEKLIVKL-----MHDASQPLHYLSGNFAPVRDETPPVKDLPVRGHLPECLNGEFVRVGPNPKFSP 94 (545)
T ss_pred CchhhhhhHHHHHHHHHHHHhh-----ccCCCCCcccccCCCcCccccCCcccCcEEEeeCCCcCCeEEEEeCCCCCCCC
Confidence 3588999999999999999886 7889999999999999997665 588899999999999999999999999999
Q ss_pred CCCCcCccCCCceEEEEEcCCceeeeeeeecchHHHHHHHcCCCcccccccccCCCCchhhhHHhhhhccccccCCCCCC
Q 007291 174 VAGHHFFDGDGMVHAVTIGNGSASYACRFTETQRLMQERELGRPVFPKAIGELHGHNGIGRLLLFYARGLFGLVDHKQGT 253 (609)
Q Consensus 174 ~~~~H~FDGDGMvha~~f~~G~a~y~~RfV~T~~~~~E~~~Gr~~~~~~~g~~~g~~g~ar~~~~~~r~~~g~~~~~~~~ 253 (609)
..++||||||||||+|+|++|+|+|+||||||++|++|+++|+++|++ ++.++|+.|+++..+...|..++..+...++
T Consensus 95 ~~~~H~FDGDGMlha~~f~~G~a~y~~RfVrT~~~~~E~~ag~~~~~~-~~~~~g~~g~~~~~~~~~r~~~~~~~~~~~~ 173 (545)
T PLN02491 95 VAGYHWFDGDGMIHGMRIKDGKATYVSRYVKTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQQLRAKLKVLDFSYGN 173 (545)
T ss_pred CCCCccccCCccEEEEEEcCCcEEEEeeeecccchhhhhhcCcccccc-cccccccchhhhhhhhhhhccccccccccCC
Confidence 888999999999999999999999999999999999999999999998 8999998898888877777766655555568
Q ss_pred ccceeeeeeeCCeEEEEEcCCccEEEec-CCCCCcccceeecccCccccccccCCeecCCCCeeEEEEeeeccCCcEEEE
Q 007291 254 GVANAGLVYFNNRILAMSEDDLPYQVRI-TPSGDLETVGRYNFNHQLKSTMIAHPKVDPVSKELFALSYDVVQKPYLKYF 332 (609)
Q Consensus 254 ~~ANT~vv~~~grLlAl~E~g~Py~ldi-~p~~tLeT~G~~df~g~L~~~~tAHPk~Dp~TGel~~f~y~~~~~p~l~~~ 332 (609)
++|||+|++|+||||||+|+|+||+|++ || +||||+|++||+|+|..+||||||+||+|||||+|+|+. .+|+++|+
T Consensus 174 ~~ANT~vi~~~grLlAl~E~g~Py~l~~~Dp-~tLeT~G~~df~g~l~~~~TAHPk~DP~TGel~~fgy~~-~~p~~~y~ 251 (545)
T PLN02491 174 GTGNTALIYHHGKLLALSEADKPYVVKVLED-GDLQTLGLLDYDKRLKHSFTAHPKVDPFTGEMFTFGYSH-EPPYITYR 251 (545)
T ss_pred CCCceeEEEECCEEEEEEcCCCCeEecCCCC-CCcceeeecccCCccCcccccCccCcCCCCCEEEEEecC-CCCcEEEE
Confidence 9999999999999999999999999996 77 999999999999999989999999999999999999997 46899999
Q ss_pred EEcCCCCCcceEEEeCCccccccccccCCCeEEEecCCccccHHHHhcCC-CCeeecCCCCeEEEEEeCcCCCCCceEEE
Q 007291 333 RFSADGDKSPDVEIHLPVPTMMHDFAITENFVVIPDQQVVFKLQEMITGG-SPVIYDKNKKSRFGILAKNAKDSNDIIWI 411 (609)
Q Consensus 333 ~~d~~G~~~~~~~i~~~~p~~~HDFaiTenYvV~~d~p~~~~~~~m~~g~-~~~~~d~~~~tr~~VipR~~~~~~~v~w~ 411 (609)
++|++|++.+.++|+++.++|||||||||||+||+++|+++++.+|++|+ .++.||+++++|||||||++++.++|+||
T Consensus 252 ~~~~~G~~~~~v~i~l~~~~~~HDFaiTeny~Vf~~~Pl~~~~~~~~~~~~~~~~~d~~~~~r~gVipR~~~~~~~irw~ 331 (545)
T PLN02491 252 VISKDGAMHDPVPITISEPIMMHDFAITENYAIFMDLPLYFRPKEMVKEKKFIYTFDATKKARFGVLPRYAKDELMIRWF 331 (545)
T ss_pred EECCCCcCcceeEeecCCCceeeeeEecCCEEEEEECCcccCHHHHhhCCCceeEECCCCCcEEEEEECCCCCCCceEEE
Confidence 99999999999999999999999999999999999999999999998875 56789999999999999998777789999
Q ss_pred ecCceeEEeccccccCCCCCcEEEEEeecCCCc-----chhhhccccccCceEEEEEeCCCCCeeEEEeeccCCcccccC
Q 007291 412 ESPDTFCFHLWNAWEEPETDEIVVIGSCMTPAD-----SIFNECDESLKSVLSEIRLNLKTGESTRRQILSESDQVNLEA 486 (609)
Q Consensus 412 e~p~~f~fH~~NA~Ee~~~~~vVv~~~~~~~~d-----~~~~~~~~~l~~~l~r~ridl~tG~~~~~~l~~~~~~~~~Ef 486 (609)
++|+||+||++|||||+ |+||++.||+.+.+ ..+.+..+.+.++|+||||||+||+++++.|. +.++||
T Consensus 332 e~~~~f~fH~~NA~Ee~--~~Ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~ridl~tg~~~~~~l~----~~~~Ef 405 (545)
T PLN02491 332 ELPNCFIFHNANAWEEE--DEVVLITCRLENPDLDMVNGKVKEKLENFGNELYEMRFNMKTGAASQKKLS----ASAVDF 405 (545)
T ss_pred EcCCceEeecCCccccC--CeEEEEEeccCCCccccccccccccccccCceEEEEEEECCCCceeeeccC----Cccccc
Confidence 99999999999999986 68999999987643 12222234456899999999999999999987 689999
Q ss_pred cccCCccCCCCCceEEEeeccCCCCcCcEEEEecCC----CCe---------EEEEcCCCccCCccEeeecCCCCCCCCC
Q 007291 487 GMVNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLSS----GEV---------KKYFYGDNKYGGEPFFLPRDANNSENED 553 (609)
Q Consensus 487 P~In~~~~Gr~~Ry~Y~~~~~p~~~~~givK~Dl~t----g~~---------~~~~~g~g~~~gEPvFVPr~~~~~~~ED 553 (609)
|+||++|.||||||+|+++.+++++++||+|+|+++ |+. +.|++|+|||+|||+||||+++.+.+||
T Consensus 406 P~In~~~~Grk~ry~Y~~~~~~~~~~~gl~K~D~~t~~~~g~~~~~~~~~~~~~~~~g~~~~~~EPvFVPr~~~~~~~ED 485 (545)
T PLN02491 406 PRVNESYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPETGKKKLEVGGNVKGIFDLGPGRFGSEAIFVPREPGTTSEED 485 (545)
T ss_pred CccCHHHCCCcccEEEEeccCCccCcCeEEEEEecccccCCccccccccceeEEEEcCCCccccCCEEecCCCCCCcccC
Confidence 999999999999999999888888899999999996 433 4799999999999999999753125899
Q ss_pred CcEEEEEEEeCCCCceEEEEEeCCCCC--eeEEEEcCCcCCCCcccccccCcchhccC
Q 007291 554 DGYILAFVHDEKTWKSELQIVNAMNLQ--LEASIKLPSRVPYGFHGTFVDSKDLVNQA 609 (609)
Q Consensus 554 DGyLLs~V~d~~~~~SeL~VlDA~~l~--~VArv~LP~rVP~GFHG~fv~~~~l~~q~ 609 (609)
|||||++|||+++++|+|+||||++|+ |||+|+||+||||||||+|++++||++|+
T Consensus 486 DG~ll~~V~d~~~~~S~l~VlDAk~~~~~pVA~v~LP~rVP~GfHG~fv~~~~l~~~~ 543 (545)
T PLN02491 486 DGYLIFFVHDENTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVTEEQLQEQA 543 (545)
T ss_pred CcEEEEEEEcCCCCcceEEEEeCCCCCCCeeEEEECCCCCCCCccccCcCHHHHHHhh
Confidence 999999999999999999999999998 99999999999999999999999999884
No 3
>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.3e-115 Score=923.69 Aligned_cols=447 Identities=36% Similarity=0.614 Sum_probs=392.1
Q ss_pred ccccCCcCCCCCCCcccce-EeeecCCCCceEEEeecCCCCcCC-CCCCcCccCCCceEEEEEcCC-ceeeeeeeecchH
Q 007291 131 QIGGNFAPVPERPVRHGLP-VTGSIPECINGVYLRNGANPLFEP-VAGHHFFDGDGMVHAVTIGNG-SASYACRFTETQR 207 (609)
Q Consensus 131 ~l~g~fapv~ee~~~~~L~-V~G~IP~~L~G~~~RNGPnp~f~p-~~~~H~FDGDGMvha~~f~~G-~a~y~~RfV~T~~ 207 (609)
+++|+|+|+++|.....|+ |+|+||++|+|+|||||||++..+ .+.+||||||||||+|.|.|| +|+|+||||||.+
T Consensus 21 ~w~g~~a~~~~E~~~t~L~~V~G~iPa~L~Gtl~RNGP~~l~~~g~~~~HwFDGDGMI~~v~f~~gg~a~yrnrfVrT~g 100 (490)
T COG3670 21 YWTGGFAPVRTEFDATDLTDVEGRIPADLDGTLYRNGPNPLHRGGIATYHWFDGDGMIHAVAFRDGGRATYRNRFVRTQG 100 (490)
T ss_pred hhhccCCccceeecccccceeeecCCcccCceEEccCCCccccCCccccCCccCCCeEEEEEecCCCceEEEEEEEeece
Confidence 5999999999999998897 899999999999999999999876 678999999999999999995 9999999999999
Q ss_pred HHHHHHcCCCcccccccccCCCCchhhhHHhhhhccccccCCCCCCccceeeeeeeCCeEEEEEcCCccEEEecCCCCCc
Q 007291 208 LMQERELGRPVFPKAIGELHGHNGIGRLLLFYARGLFGLVDHKQGTGVANAGLVYFNNRILAMSEDDLPYQVRITPSGDL 287 (609)
Q Consensus 208 ~~~E~~~Gr~~~~~~~g~~~g~~g~ar~~~~~~r~~~g~~~~~~~~~~ANT~vv~~~grLlAl~E~g~Py~ldi~p~~tL 287 (609)
|.+|.+||++++++.++...+ -.|.. .+ .+ ..+|.|||+|++|+++|+||||+|.||+|| | .||
T Consensus 101 ~~ae~~Ag~~l~~g~~~~~p~---~~~~~---~~--~~-----~lkn~aNTsVi~~~~~LlalwEgG~pyrLd--p-~tL 164 (490)
T COG3670 101 YLAENEAGKPLWGGLGETQPP---GVRPH---SR--TG-----DLKNAANTSVIMHGDELLALWEGGSPYRLD--P-DTL 164 (490)
T ss_pred eehhhhcCcceeccccccCCC---CcCcC---cc--cc-----ccccCCccceEeehhHHHHHHhcCCccccC--h-hHh
Confidence 999999999999886554322 11110 00 11 237899999999999999999999999988 8 899
Q ss_pred ccceeecccC-ccccccccCCeecCCCCeeEEEEeeeccCCcEEEEEEcCCCCCcceEEEeCCccccccccccCCCeEEE
Q 007291 288 ETVGRYNFNH-QLKSTMIAHPKVDPVSKELFALSYDVVQKPYLKYFRFSADGDKSPDVEIHLPVPTMMHDFAITENFVVI 366 (609)
Q Consensus 288 eT~G~~df~g-~L~~~~tAHPk~Dp~TGel~~f~y~~~~~p~l~~~~~d~~G~~~~~~~i~~~~p~~~HDFaiTenYvV~ 366 (609)
+|+|..+|+| .+.++|+||||+||.||||++|+|+... ++++||++|++|++++.+.|++|.+.|||||+||+||+||
T Consensus 165 ~TlG~~~~~g~~~g~~fsAHPkvDp~tgel~~fg~s~~~-~~l~~~~v~~~G~l~r~~~i~lpg~~~~HDFa~T~~y~If 243 (490)
T COG3670 165 ETLGKEDFGGDPLGGPFSAHPKVDPDTGELFNFGYSFAL-PYLTYYVVDADGELRRTVDIPLPGPPMMHDFAITENYLIF 243 (490)
T ss_pred hhcChhhcCCCCCCCccccCccCCCCCceEEEEEeccCC-CeeEEEEECCCCcEEEeeeeecCCCccceeeeecCceEEE
Confidence 9999999999 5566899999999999999999999764 5999999999999999999999999999999999999999
Q ss_pred ecCCccccH-HHHhc---CCCCeeecCCCCeEEEEEeCcCCCCCceEEEecCceeEEeccccccCCCCCcEEEEEeecCC
Q 007291 367 PDQQVVFKL-QEMIT---GGSPVIYDKNKKSRFGILAKNAKDSNDIIWIESPDTFCFHLWNAWEEPETDEIVVIGSCMTP 442 (609)
Q Consensus 367 ~d~p~~~~~-~~m~~---g~~~~~~d~~~~tr~~VipR~~~~~~~v~w~e~p~~f~fH~~NA~Ee~~~~~vVv~~~~~~~ 442 (609)
++.|+.+|+ .+++. .+.++.|+|+.++||+||||.+ + ++|||||+|+||+||+.||||++ |++|+++++..+
T Consensus 244 ~~~Pv~~d~~p~ll~~~~~~~~~~~~pe~ptri~V~pR~g-~-~~irwfE~~p~fvfH~~NAye~~--d~~v~~d~~~~~ 319 (490)
T COG3670 244 FDLPVTFDPVPRLLGRPADGHAMRWRPELPTRILVLPREG-D-SEIRWFEAEPGFVFHFLNAYEEG--DEVVLVDFLRYD 319 (490)
T ss_pred EeCcccccchhHHhcCcccccceeecCCCCcEEEEEccCC-C-CceeEEecCCeEEEEecceeecC--CCcEEEEEEeec
Confidence 999999994 44443 3678999999999999999986 3 68999999999999999999997 455666655443
Q ss_pred Cc-chhhh---cc-----ccccCceEEEEEeCCCCCeeEEEeeccCCcccccCcccCCccCCCCCceEEEeeccC-CCCc
Q 007291 443 AD-SIFNE---CD-----ESLKSVLSEIRLNLKTGESTRRQILSESDQVNLEAGMVNRNSLGRKTQFAYLAIAEP-WPKV 512 (609)
Q Consensus 443 ~d-~~~~~---~~-----~~l~~~l~r~ridl~tG~~~~~~l~~~~~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~p-~~~~ 512 (609)
.- ..+.. .. ....++|+||+|||+||++..+.+. ++.+|||+||+++.|++|||+|++...| ++.+
T Consensus 320 ~~~~~~~~~~~~~~g~~~~~a~~~L~R~~lnl~tg~v~~~~~~----~r~~EFP~in~~~~G~p~RY~Y~~~~rp~~~l~ 395 (490)
T COG3670 320 DFSQTLDTLGEGPGGDFRTLAPPRLHRWTLNLKTGKVAEEQLD----DRACEFPRINPRYVGQPYRYTYMSGARPGTFLF 395 (490)
T ss_pred ccccccccccccccccccccCCCcceEEEEccccchhHHHhhh----hhhcccCccChhhcCCceEEEEEecccCCccch
Confidence 21 11111 00 1115899999999999999888887 6999999999999999999999998776 3455
Q ss_pred Cc---EEEEecCCCCeEEEEcCCCccCCccEeeecCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCC--eeEEEEc
Q 007291 513 SG---FAKVDLSSGEVKKYFYGDNKYGGEPFFLPRDANNSENEDDGYILAFVHDEKTWKSELQIVNAMNLQ--LEASIKL 587 (609)
Q Consensus 513 ~g---ivK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~~~~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~~l~--~VArv~L 587 (609)
+| |+|+|++||+.+.|++|+++|++||+||||++ +.+|||||||++|+|.+.++|||+|+||+++. ||||+.|
T Consensus 396 ~g~~~l~k~D~~tg~~~~~~~g~~~y~~E~vfvPrpg--~~~EdDGwLl~~vyd~~~~~Sel~v~DA~~~~~epIa~l~L 473 (490)
T COG3670 396 QGLQTLAKHDLETGTSQVYSFGPRGYGSEPVFVPRPG--SSAEDDGWLLTLVYDGDRHASELLVFDAQRVTAEPIARLAL 473 (490)
T ss_pred hhcceeEEEeccCCcEEEEecCCCCcccccccccCCC--CCcCCCcEEEEEEEecCCCcceEEEEecccCCCCcceEEec
Confidence 66 99999999999999999999999999999996 78999999999999999999999999999975 9999999
Q ss_pred CCcCCCCcccccccCcc
Q 007291 588 PSRVPYGFHGTFVDSKD 604 (609)
Q Consensus 588 P~rVP~GFHG~fv~~~~ 604 (609)
|++|||||||+|++.++
T Consensus 474 p~~vP~gfHG~w~~~~~ 490 (490)
T COG3670 474 PQRVPYGFHGNWVPTEE 490 (490)
T ss_pred ccccccccccccccccC
Confidence 99999999999998763
No 4
>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Carotenoid oxygenases cleave a variety of carotenoids into a range of biologically important products, including apocarotenoids in plants that function as hormones, pigments, flavours, floral scents and defence compounds, and retinoids in animals that function as vitamins, visual pigments and signalling molecules []. Examples of carotenoid oxygenases include: Beta-carotene-15,15'-monooxygenase (BCDO1; 1.14.99.36 from EC) from animals, which cleaves beta-carotene symmetrically at the central double bond to yield two molecules of retinal []. Beta-carotene-9',10'-dioxygenase (BCDO2) from animals, which cleaves beta-carotene asymmetrically to apo-10'-beta-carotenal and beta-ionone, the latter being converted to retinoic acid. Lycopene is also oxidatively cleaved []. 9-cis-epoxycarotenoid dioxygenase from plants, which cleaves 9-cis xanthophylls to xanthoxin, a precursor of the hormone abscisic acid []. Apocarotenoid-15,15'-oxygenase from bacteria and cyanobacteria, which converts beta-apocarotenals rather than beta-carotene into retinal. This protein has a seven-bladed beta-propeller structure with four hisitidines that hold the iron active centre []. Retinal pigment RPE65 from animals, which in its soluble form binds all-trans retinol, and in its membrane-bound form binds all-trans retinyl esters. RPE65 is important for the production of 11-cis retinal during visual pigment regeneration []. ; PDB: 3NPE_A 2BIX_B 2BIW_A 3KVC_B 3FSN_B.
Probab=100.00 E-value=2.1e-109 Score=918.76 Aligned_cols=455 Identities=34% Similarity=0.611 Sum_probs=345.0
Q ss_pred ccCCcCCCCCC-CcccceEeeecCCCCceEEEeecCCCCc--CCCCCCcCccCCCceEEEEEcCCceeeeeeeecchHHH
Q 007291 133 GGNFAPVPERP-VRHGLPVTGSIPECINGVYLRNGANPLF--EPVAGHHFFDGDGMVHAVTIGNGSASYACRFTETQRLM 209 (609)
Q Consensus 133 ~g~fapv~ee~-~~~~L~V~G~IP~~L~G~~~RNGPnp~f--~p~~~~H~FDGDGMvha~~f~~G~a~y~~RfV~T~~~~ 209 (609)
+|+|+|+.+|. +..+|.|+|+||+||+|+|||||||+++ .....+||||||||||+|+|++|+|+|+||||||++|+
T Consensus 1 ~g~f~~~~~E~~~~~~~~v~G~iP~~L~G~~~RnGP~~~~~~~~~~~~H~FDGdGmv~~~~f~~g~v~y~~R~v~T~~~~ 80 (486)
T PF03055_consen 1 SGGFAPVTEEVPDPEDLEVEGEIPSWLDGTLYRNGPGPFEVIGGRRYNHWFDGDGMVHAFRFDDGRVTYRNRFVRTEGYK 80 (486)
T ss_dssp SGCGS---SEE-EEEC-EEEE---TT-EEEEEEEEBEESE-ETTEE-SCGGGSEBEEEEEEEETTEEEEEEEE---HHHH
T ss_pred CCCCCCCccccCCccccEEeeeCCCcCCCeeEEEcCcccccCCCcccccccCCCCEEEEEEECCCCceeEEEEeCcHHHH
Confidence 58999999888 7778999999999999999999999887 34567899999999999999999999999999999999
Q ss_pred HHHHcCCCcccccccccCCCCchhhhHHhhhhccccccCCCCCCccceeeeeeeCCeEEEEEcCCccEEEecCCCCCccc
Q 007291 210 QERELGRPVFPKAIGELHGHNGIGRLLLFYARGLFGLVDHKQGTGVANAGLVYFNNRILAMSEDDLPYQVRITPSGDLET 289 (609)
Q Consensus 210 ~E~~~Gr~~~~~~~g~~~g~~g~ar~~~~~~r~~~g~~~~~~~~~~ANT~vv~~~grLlAl~E~g~Py~ldi~p~~tLeT 289 (609)
+|+++|+.+|++.+|+.... +-.+.. +... ........+|+|||+|++|+||||||||+|.||+|| | .||||
T Consensus 81 ~e~~~g~~~~~g~~gt~~~~-~~~~~~-~~~~---~~~~~~~~~~~aNt~v~~~~g~llAl~E~g~p~~lD--p-~TLeT 152 (486)
T PF03055_consen 81 AEREAGRRLYRGEFGTVPLP-DPCRNI-FRFP---MPFFRGKPKNNANTNVIPHGGRLLALWEGGPPYELD--P-DTLET 152 (486)
T ss_dssp HHHHHTSS-SC-TTTCTTCS-THHHHT-CHHT---TS--GGGB-----SEEEEETTEEEEE-TTSEEEEEE--T-TTCEE
T ss_pred HHHhcCCceecccccccccC-chhhhh-hhhc---cccccccCCCCceeeeEEECCEEEEEEcCCCCEEec--h-hHhhh
Confidence 99999999999888875411 111111 0000 011122347899999999999999999999999999 8 99999
Q ss_pred ceeecccCccc-cccccCCeecCCCCeeEEEEeeecc--CCcEEEEEEcCCCCCcceEEE-eCCccccccccccCCCeEE
Q 007291 290 VGRYNFNHQLK-STMIAHPKVDPVSKELFALSYDVVQ--KPYLKYFRFSADGDKSPDVEI-HLPVPTMMHDFAITENFVV 365 (609)
Q Consensus 290 ~G~~df~g~L~-~~~tAHPk~Dp~TGel~~f~y~~~~--~p~l~~~~~d~~G~~~~~~~i-~~~~p~~~HDFaiTenYvV 365 (609)
+|.+||+|+|+ ..||||||+||+||||++|+|+... .|+++||++|++|++....++ +++.++|||||+|||||+|
T Consensus 153 ~g~~~~~~~l~~~~~tAHp~~Dp~tg~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iHdf~vT~~Y~V 232 (486)
T PF03055_consen 153 LGPFDFDGKLPGQPFTAHPKIDPETGELYNFGYSLGPEGSPKLTVYEIDPDGKKIHRVPSFPLPRPSYIHDFAVTENYVV 232 (486)
T ss_dssp EEEEEGGGTSSTS---S--EEETTTTTEEEEEEECSSTTSEEEEEEEE-TTSEEEEEEEESCCCS-B-----EE-SSEEE
T ss_pred cCcccccccccCcccccCceEcccCCcEEEEEEEeccCCCCcEEEEEEcCccceeEEeeeccCCCCcccccccccCceEE
Confidence 99999999999 5899999999999999999999655 589999999999976655665 8999999999999999999
Q ss_pred EecCCccccHHHHhcCC---CCeeecCCCCeEEEEEeCcCCCCCceEEEecCceeEEeccccccCCCC-CcEEEEEeecC
Q 007291 366 IPDQQVVFKLQEMITGG---SPVIYDKNKKSRFGILAKNAKDSNDIIWIESPDTFCFHLWNAWEEPET-DEIVVIGSCMT 441 (609)
Q Consensus 366 ~~d~p~~~~~~~m~~g~---~~~~~d~~~~tr~~VipR~~~~~~~v~w~e~p~~f~fH~~NA~Ee~~~-~~vVv~~~~~~ 441 (609)
|+++|+.+++.+++.|. .++.|++++++||+||||++++ ..++||++|+||+||++||||++++ ++||++.|++.
T Consensus 233 ~~~~P~~~~~~~~~~g~~~~~~~~~~p~~~t~~~VipR~~~~-~~v~~~~~~~~~~~H~~NAyE~~dg~~~iv~d~~~~~ 311 (486)
T PF03055_consen 233 FPDNPLRFDPERLLLGGSPIDCLKWDPERPTRFHVIPRDGGK-SPVRWFEAPPFFVFHFVNAYEDDDGGGEIVLDACRYD 311 (486)
T ss_dssp EEE-SEEE-HHHHHTTCCTGGCEEE-TTS-EEEEEEETTTSC-CCEEEEEETTCEEEEEEEEEEETTT-TEEEEEEEEEC
T ss_pred EEECCeEECHHHHhhCCcccceEEECCCCCeEEEEEECcCCC-ceeEEEecCChhhccccceeecCCCceEEEEEEeecC
Confidence 99999999999999887 7999999999999999998754 6899999999999999999999742 38888888876
Q ss_pred CCcchhh----h-------ccccccCceEEEEEeCC--CCCeeEEEeeccCCcc-cccCcccCCccCCCCCceEEEeecc
Q 007291 442 PADSIFN----E-------CDESLKSVLSEIRLNLK--TGESTRRQILSESDQV-NLEAGMVNRNSLGRKTQFAYLAIAE 507 (609)
Q Consensus 442 ~~d~~~~----~-------~~~~l~~~l~r~ridl~--tG~~~~~~l~~~~~~~-~~EfP~In~~~~Gr~~Ry~Y~~~~~ 507 (609)
+.+.+.. . ......++|+||+||++ +|+++++.|. +. ++|||+||++|.||+|||+|++..+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~R~~idl~~~~~~~~~~~l~----~~~~~EfP~in~~~~g~~~ry~Y~~~~~ 387 (486)
T PF03055_consen 312 DPEFLDSFYLDNLRPDGMDFNSDSPGRLRRYRIDLDSKTGRVSEEPLD----DGNPCEFPRINPRYSGRPYRYVYAVGMD 387 (486)
T ss_dssp SSS-CGCSCHHHHCC-HHHCCCS-EEEEEEEEEETT--TCEEEEEEEE----TTEEEEEEEE-GGGTTS--SEEEEEEEC
T ss_pred CcccccccchhcccccccccccCCCceEEEEEEccccccceeEHhHhc----cCCCcccceeCcccCCCcccEEEEEeec
Confidence 5442211 1 11234678999999999 9989888887 45 6999999999999999999987654
Q ss_pred C----CCCcCcEEEEecCCCCeEEEEcCCCccCCccEeeecCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCC--e
Q 007291 508 P----WPKVSGFAKVDLSSGEVKKYFYGDNKYGGEPFFLPRDANNSENEDDGYILAFVHDEKTWKSELQIVNAMNLQ--L 581 (609)
Q Consensus 508 p----~~~~~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~~~~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~~l~--~ 581 (609)
+ ...+++|+|+|++||+++.|.+++++|++||+||||++ +.+|||||||++|+|..+++|+|+||||++|+ |
T Consensus 388 ~~~~~~~~~~~l~k~D~~tg~~~~~~~~~~~~~~EpvFVPr~~--~~~EdDG~Ll~~v~~~~~~~s~l~VlDA~~l~~GP 465 (486)
T PF03055_consen 388 PERSPGFPFNGLVKVDLETGEVQRWSFGPGCFPGEPVFVPRPG--GAEEDDGYLLSVVYDSDTNRSELLVLDAKDLEEGP 465 (486)
T ss_dssp SCTS---EEEEEEEEETTTTEEEEEE-TTTEEE--EEEEE-TT--S-STT-EEEEEEEEETTTTCEEEEEEETTTTCE--
T ss_pred ccCCcCcCCCEEEEEecccccceEEECCCCceecceEeccCCC--CCCCCceEEEEEEEECCCCccEEEEEeCCCCCcCc
Confidence 3 34689999999999999999999999999999999995 58999999999999999999999999999999 5
Q ss_pred eEEEEcCCcCCCCcccccccC
Q 007291 582 EASIKLPSRVPYGFHGTFVDS 602 (609)
Q Consensus 582 VArv~LP~rVP~GFHG~fv~~ 602 (609)
|||++||++||+||||+|+++
T Consensus 466 vAr~~lP~~vP~gfHG~w~~~ 486 (486)
T PF03055_consen 466 VARVELPHRVPYGFHGSWVPE 486 (486)
T ss_dssp EEEEEESS---S-SEEEEEE-
T ss_pred eEEEECCCCCCCCccccccCC
Confidence 999999999999999999974
No 5
>PLN02969 9-cis-epoxycarotenoid dioxygenase
Probab=100.00 E-value=7.6e-104 Score=890.53 Aligned_cols=452 Identities=24% Similarity=0.421 Sum_probs=371.7
Q ss_pred cccCCcCCCCCC-Ccccc-eEeeecCCCC-ceEEEeecCCCCcCCC-CCCcCccCCCceEEEEEcCC--ceeeeeeeecc
Q 007291 132 IGGNFAPVPERP-VRHGL-PVTGSIPECI-NGVYLRNGANPLFEPV-AGHHFFDGDGMVHAVTIGNG--SASYACRFTET 205 (609)
Q Consensus 132 l~g~fapv~ee~-~~~~L-~V~G~IP~~L-~G~~~RNGPnp~f~p~-~~~H~FDGDGMvha~~f~~G--~a~y~~RfV~T 205 (609)
++++|+|+.+|. +..+| +|+|+||+|| +|+|||||||+++.+. ..+||||||||||+|+|++| +|+|+||||||
T Consensus 60 ~~~~f~~~~~E~~~~~~l~~V~G~IP~~L~~GtlyRnGPg~~~~~~~~~~HwFDGdGmlh~f~f~~G~~~v~y~nRfVrT 139 (610)
T PLN02969 60 YQFLFVSQRSETKDPVRLRVVEGAIPSDFPSGTYYLAGPGLFTDDHGSTVHPLDGHGYLRAFHIDGGDRPVQYSARYVKT 139 (610)
T ss_pred hhhhhcCChhhcCCccccceEEecCCchhcCCEEEEecCCcccCCCCCccccCCCCceEEEEEEcCCCeEEEEEeeeecc
Confidence 689999999888 56677 5999999999 9999999999877553 35899999999999999998 49999999999
Q ss_pred hHHHHHHHcCCCccc----ccccccCCCCchhhhHHhhhhccccccCCCCCCccceeeeeeeCCeEEEEEcCCccEEEec
Q 007291 206 QRLMQERELGRPVFP----KAIGELHGHNGIGRLLLFYARGLFGLVDHKQGTGVANAGLVYFNNRILAMSEDDLPYQVRI 281 (609)
Q Consensus 206 ~~~~~E~~~Gr~~~~----~~~g~~~g~~g~ar~~~~~~r~~~g~~~~~~~~~~ANT~vv~~~grLlAl~E~g~Py~ldi 281 (609)
++|++|+++|+.++. +.++.+.+. . ...+....+|+|||+|++|+||||||||+|.||+||
T Consensus 140 ~~~~~E~~ag~~~~~~~~~~pfs~~~~~------------~--~~~~~~~~kn~ANT~V~~~gg~LlAl~E~g~P~~lD- 204 (610)
T PLN02969 140 EAKKEEHDPETRTWRFTYRGPFSVLKGG------------K--RVGNVKVMKNVANTSVLKWGGRLLCLWEGGEPYEID- 204 (610)
T ss_pred HHHHHHHHhCCcceeeeeccchhcccCC------------C--CcccccccccCCCcceeeeCCEEEEecCCCCCeEcC-
Confidence 999999999987653 222221110 0 000111237899999999999999999999999988
Q ss_pred CCCCCcccceeecc-----------------------------cCccc---cccccCCeecCCCCeeEEEEeee----cc
Q 007291 282 TPSGDLETVGRYNF-----------------------------NHQLK---STMIAHPKVDPVSKELFALSYDV----VQ 325 (609)
Q Consensus 282 ~p~~tLeT~G~~df-----------------------------~g~L~---~~~tAHPk~Dp~TGel~~f~y~~----~~ 325 (609)
| .||||+|++|| .|+++ ..||||||+||.||||++|+|+. ..
T Consensus 205 -P-~TLeT~G~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~p~~~ftAHpK~DP~tg~lv~f~~~~~~~~~~ 282 (610)
T PLN02969 205 -S-GTLETIGRFDLAPDDDSSKDDRLQGSDAWDLAARLLKPILTGVFKMPKKRLLSHYKIDGRRNRLLVVTCNAEDMLLP 282 (610)
T ss_pred -c-CccceeecccccccccccccccccccccccccccccccccccccccCCccccccCCcCCCCCCEEEEEeccccccCC
Confidence 8 89999999999 44443 36899999999999999999985 34
Q ss_pred CCcEEEEEEcCCCCCcceEEEeCCccccccccccCCCeEEEecCCccccHHHHh---cCC----CCeeecCCCCe-EEEE
Q 007291 326 KPYLKYFRFSADGDKSPDVEIHLPVPTMMHDFAITENFVVIPDQQVVFKLQEMI---TGG----SPVIYDKNKKS-RFGI 397 (609)
Q Consensus 326 ~p~l~~~~~d~~G~~~~~~~i~~~~p~~~HDFaiTenYvV~~d~p~~~~~~~m~---~g~----~~~~~d~~~~t-r~~V 397 (609)
++.++||++|++|++.+.++|+++.++|||||||||||+||+++|+++++.+++ .|. .++.|++++++ ||+|
T Consensus 283 ~~~~~~y~~d~~G~~~~~~~~~~p~~~~iHDfaiTeny~Vf~~~P~~~d~~~~l~~~~G~~~~~~~l~wdp~~~t~~~~V 362 (610)
T PLN02969 283 RSNFTFYEFDADFKLVQRKEFKLDDHLMIHDWAFTDTHYVLLANRVKLDVPGSLLAMAGLSPMISALAVDPSRPSSPVYL 362 (610)
T ss_pred CceeEEEEECCCCCEecceeecCCCcceeeeeeccCCEEEEEECceecCHHHHHHHhhcCCCchheeEECCCCCccEEEE
Confidence 688999999999999998999999999999999999999999999999988644 343 44899999995 8999
Q ss_pred EeCcCCCC-CceEE---EecC-ceeEEeccccccCCC-CC--cEEEEEeec-CCCcchhhh---------cc--------
Q 007291 398 LAKNAKDS-NDIIW---IESP-DTFCFHLWNAWEEPE-TD--EIVVIGSCM-TPADSIFNE---------CD-------- 451 (609)
Q Consensus 398 ipR~~~~~-~~v~w---~e~p-~~f~fH~~NA~Ee~~-~~--~vVv~~~~~-~~~d~~~~~---------~~-------- 451 (609)
|||++++. ..++| +++| +||+||++|||||++ +| +||++.|+. ++.-.++.. ..
T Consensus 363 ipR~~~~~~~~~~W~v~~e~~~~~f~fH~~NAfEe~~~~g~~~Ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (610)
T PLN02969 363 LPRFPEKEAGGRDWRVPVEVPSQLWLIHVGNAYEERDDRGNLRIQLHASACSYQWFSFHRMFGYDWQNKKLDPSVMNNAK 442 (610)
T ss_pred EECcCCCcccceeeeeEEeeCCCeEEEeccceeecCCCCCceEEEEEEeccccccccccccccccccccccCcchhcccC
Confidence 99997542 57999 9998 599999999999742 23 477766532 221111100 00
Q ss_pred -ccccCceEEEEEeCC-CCCe---eEEEeeccCCcccccCcccCCccCCCCCceEEEeeccC------CCCcCcEEEEec
Q 007291 452 -ESLKSVLSEIRLNLK-TGES---TRRQILSESDQVNLEAGMVNRNSLGRKTQFAYLAIAEP------WPKVSGFAKVDL 520 (609)
Q Consensus 452 -~~l~~~l~r~ridl~-tG~~---~~~~l~~~~~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~p------~~~~~givK~Dl 520 (609)
....++|+||+||+. +|++ +.+.|.. ..+.++|||+||++|.||+|||+|++..++ +..+++|+|+|+
T Consensus 443 ~~~~~~~l~r~~idl~~~g~~~~~~~~~l~~-~~~~~~EFP~In~~~~Gr~~ry~Y~~~~~~~~~~~~~~~~~~l~K~D~ 521 (610)
T PLN02969 443 GKELLPHLVQVSIDLDRTGDCRSCDVEPLSN-QWEKPADFPVINPSFSGQKNEYTYAAAASGSRKTLPHFPFDSVVKLDV 521 (610)
T ss_pred cccccceEEEEEEeCCcCCccccccceeecc-ccccccccCccChhHCCCcceEEEEeeecCCCcccccCCcCeEEEEEC
Confidence 112468999999996 6765 3355641 114689999999999999999999987652 235799999999
Q ss_pred CCCCeEEEEcCCCccCCccEeeecCC--CCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCC----eeEEEEcCCcC--C
Q 007291 521 SSGEVKKYFYGDNKYGGEPFFLPRDA--NNSENEDDGYILAFVHDEKTWKSELQIVNAMNLQ----LEASIKLPSRV--P 592 (609)
Q Consensus 521 ~tg~~~~~~~g~g~~~gEPvFVPr~~--~~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~~l~----~VArv~LP~rV--P 592 (609)
++|+++.|++|+++|+|||+||||++ + +++|||||||++|+|..+++|+|+||||++|+ ||||++||++| |
T Consensus 522 ~tg~~~~w~~g~~~~~~EPvFVPr~~~p~-~~~EDDG~Ll~~v~d~~~~~S~LvILDAk~~~eg~~PVAri~LP~~v~~P 600 (610)
T PLN02969 522 PDGSARSWSTGARRFVGEPVFVPRKSSQG-GGEEDDGYVLVVEYAVSDERCYLVILDAKRIGERDAVVAKLEVPKHLTFP 600 (610)
T ss_pred CCCCEEEEEeCCCCcccCCEEecCCCCCC-CCccCCcEEEEEEEECCCCceEEEEEeCCCCcccCceeEEEECCcccCCC
Confidence 99999999999999999999999951 3 57899999999999999999999999999997 59999999998 9
Q ss_pred CCcccccccC
Q 007291 593 YGFHGTFVDS 602 (609)
Q Consensus 593 ~GFHG~fv~~ 602 (609)
+||||+|+++
T Consensus 601 ~GfHG~w~~~ 610 (610)
T PLN02969 601 MGFHGFWADE 610 (610)
T ss_pred ccccccccCC
Confidence 9999999874
No 6
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.9e-90 Score=760.35 Aligned_cols=510 Identities=49% Similarity=0.790 Sum_probs=481.9
Q ss_pred CCCCChhHHHHHHHHHHHHHHhhhccc-CCCCCCCCCCccccccCCcCCCCCCCcccceEeeecCCCCceEEEeecCCCC
Q 007291 92 QSQWNPLQRAAAMALDMAENALVSRER-QHPLPKTADPRVQIGGNFAPVPERPVRHGLPVTGSIPECINGVYLRNGANPL 170 (609)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~l~g~fapv~ee~~~~~L~V~G~IP~~L~G~~~RNGPnp~ 170 (609)
...+++.+..+..++|.. ..+..++. ..+++++++|.+++.++|+|+.|.++...+.++|.+|.+++|.++|||||+.
T Consensus 68 h~fd~~~~~~~~~~~dg~-~~~~~~~~~s~~y~~~~~p~r~v~~~f~~~~~~pd~~~~~~s~~~~~~~~g~~~rd~aN~~ 146 (582)
T KOG1285|consen 68 HLFDGPALLHAFHFLDGR-VYYSSRYLESDPYKKTVDPNRIVSGEFAPVAEFPDPCKNIFSGFFPEFRNGESIRDNANPN 146 (582)
T ss_pred ccccchhhhhheeecCCe-EEEEeeecccCCcccccccceeeeccccccCCCCCccCcceeeeeeecccccccccCCCcc
Confidence 345689999999999998 44555544 5789999999999999999999888888889999999999999999999999
Q ss_pred cCCCCCCcCccCCCceEEEEEcCC--ceeeeeeeecchHHHHHHHcCCCcccccccccCCCCchhhhHHhhhhccccccC
Q 007291 171 FEPVAGHHFFDGDGMVHAVTIGNG--SASYACRFTETQRLMQERELGRPVFPKAIGELHGHNGIGRLLLFYARGLFGLVD 248 (609)
Q Consensus 171 f~p~~~~H~FDGDGMvha~~f~~G--~a~y~~RfV~T~~~~~E~~~Gr~~~~~~~g~~~g~~g~ar~~~~~~r~~~g~~~ 248 (609)
|.+.+++|+||||||+|+++|+.| +++|++||.+| |++|..+|+..+++.+|+++++.|++|...+++|.+.++.+
T Consensus 147 f~pv~g~~~~~gtet~~~~ki~~~tl~t~~~~~~~k~--~v~~~~~gah~~~d~~G~~~g~~g~~~~~~~~~r~~~~~~~ 224 (582)
T KOG1285|consen 147 FTPVGGHHLYAGTETPHAVKIDPGTLETTYKVRFTKT--LVQEHTAGAHPHPDEIGTVYGHFGIARFGLFFARALTVLKN 224 (582)
T ss_pred eeecCCCeeEecCCCceeEEecCcccceeEeeccccc--eeeeeecccCCcccCcccEEeeechhhccccccceeEEEec
Confidence 999999999999999999999999 88999999999 99999999999999999999999999999899999989989
Q ss_pred CCCCCccceeeeeeeCCeEEEEEcCCccEEEecCCCCCccc-ceeecccCccccccccCCeecCCCCeeEEEEeeeccCC
Q 007291 249 HKQGTGVANAGLVYFNNRILAMSEDDLPYQVRITPSGDLET-VGRYNFNHQLKSTMIAHPKVDPVSKELFALSYDVVQKP 327 (609)
Q Consensus 249 ~~~~~~~ANT~vv~~~grLlAl~E~g~Py~ldi~p~~tLeT-~G~~df~g~L~~~~tAHPk~Dp~TGel~~f~y~~~~~p 327 (609)
+..+.+.+|+.++++.++++|+.|+++||.+.+...|++|| ||+++|+++|...+.||||+||.|||+++++|+..+++
T Consensus 225 p~~~~~~~~~~~v~~~~~~~a~~~dd~~~p~yvhs~G~tenyi~~~e~~~~l~~~~~a~pk~~~~~g~~~~~~yd~~~~~ 304 (582)
T KOG1285|consen 225 PANGVGLANAGLVWFHNRLLAYSEDDLPYPGYVHSFGDTENYIGRFEFPLRLNLSKFAHPKLDPVTGEWFADFYDWVPKP 304 (582)
T ss_pred CCCccccccccceEeecceeeeccCCCccceEEeecCCccceEeEecCCcccchhhhccCcccccccchhhhhhcccCCC
Confidence 98899999999999999999999999999999877799999 99999999999999999999999999999999999889
Q ss_pred cEEEEEEcCCCCCcceEEEeCCccccccccccCCCeEEEecCCccccHHHHhcCCCCeeecCCCCeEEEEEeCcCCCCCc
Q 007291 328 YLKYFRFSADGDKSPDVEIHLPVPTMMHDFAITENFVVIPDQQVVFKLQEMITGGSPVIYDKNKKSRFGILAKNAKDSND 407 (609)
Q Consensus 328 ~l~~~~~d~~G~~~~~~~i~~~~p~~~HDFaiTenYvV~~d~p~~~~~~~m~~g~~~~~~d~~~~tr~~VipR~~~~~~~ 407 (609)
++.|++++..|.+...+.|....|+|+||||+|||+.|++|+++.+++.+|..+++++.++..+..||++.++++.+.+.
T Consensus 305 ~l~~~~~~~~~~k~~~~~~~~~~~t~hh~na~eedg~vi~D~~~~~~~~~~~~~~~p~~~~~~k~~rfg~~~k~~~d~~~ 384 (582)
T KOG1285|consen 305 YLIYHKFSKEGGKSVPVEIFPSFPTFHHDNAFEEDGCVVPDLCVYFDLSEMIRDTSPLLYDNGKTLRFGLLSKTAPDARR 384 (582)
T ss_pred cEEEEEeccccCccCcceeccCcceEEEeeeecccCceEEEEEEEechhhhhcccceeecccccccccccccccCCcccc
Confidence 99999999999999988887779999999999999999999999999999999988999999999999999999999999
Q ss_pred eEEEecCceeEEeccccccCCCCC-cEEEEEeecCCCcchhhhccccccCceEEEEEeCCCCCeeEEEeeccCCcccccC
Q 007291 408 IIWIESPDTFCFHLWNAWEEPETD-EIVVIGSCMTPADSIFNECDESLKSVLSEIRLNLKTGESTRRQILSESDQVNLEA 486 (609)
Q Consensus 408 v~w~e~p~~f~fH~~NA~Ee~~~~-~vVv~~~~~~~~d~~~~~~~~~l~~~l~r~ridl~tG~~~~~~l~~~~~~~~~Ef 486 (609)
++|.+.++|++||++|+||+...+ +++|+..|+.+.+.++++.++.+..+|.+.|++++||...++.+.. ..++|+
T Consensus 385 ~~~p~~~~~~~~~~~~~~e~~~~~~~~~v~~~~~s~~~~i~~~~de~~~~~l~e~r~~~~tg~~~~~~~~~---~~nl~~ 461 (582)
T KOG1285|consen 385 IVWPLSPSKFAFHLWNNWEKKPYDWEVVVIGSCMSSTSTIFRESDELLGNRLEEIRLNLKTGLEFPRPVIP---KINLDF 461 (582)
T ss_pred eEEEeccccccccchhhhcccCCCceEEeecccCCccchhhcccccchhceeeeeeecccccccccceeec---cccccc
Confidence 999999999999999999975444 7888999999999999988889999999999999999999888874 479999
Q ss_pred cccCCccCCCCCceEEEeeccCCCCcCcEEEEecCCCCeEEEEcCCCccCCccEeeecCCCCCCCCCCcEEEEEEEeCCC
Q 007291 487 GMVNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGEVKKYFYGDNKYGGEPFFLPRDANNSENEDDGYILAFVHDEKT 566 (609)
Q Consensus 487 P~In~~~~Gr~~Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~~~~~~~EDDGyLLs~V~d~~~ 566 (609)
++||..|.||+|||+|+++.++|++++||+|+|+.+|++.+|.+|.++++|||+|||+++ +.+|||||||++|||+++
T Consensus 462 ~~in~~~~Gkk~ryvY~ai~~~~p~~~g~vKvDl~~g~~~~w~~~~~~~~GEP~FVP~p~--~~eEDdG~Iv~~v~~~~~ 539 (582)
T KOG1285|consen 462 GMINRSYLGKKYRYVYGAILDPWPKVSGIVKVDLVTGEVKKWREGGGRPGGEPIFVPRPG--TLEEDDGYIVSVVHDESK 539 (582)
T ss_pred ccccceeecccceEEEEEecCCccCCCeEEEEEecCCceeeEecCCCccCCCceEecCCC--CcccCCcEEEEEEEcCCC
Confidence 999999999999999999999999999999999999999999999999999999999984 689999999999999999
Q ss_pred CceEEEEEeCCCCCeeEEEEcCCcCCCCcccccccCcchhccC
Q 007291 567 WKSELQIVNAMNLQLEASIKLPSRVPYGFHGTFVDSKDLVNQA 609 (609)
Q Consensus 567 ~~SeL~VlDA~~l~~VArv~LP~rVP~GFHG~fv~~~~l~~q~ 609 (609)
++|+|+||||++|+++||++||.||||||||+|+++.||++|.
T Consensus 540 ~~s~l~ildAK~l~~~ar~~vp~rvP~gfHG~f~~~~~~~~~~ 582 (582)
T KOG1285|consen 540 EKSFLLILDAKTLEEVARVEVPTRVPYGFHGTFVSTTDLATQS 582 (582)
T ss_pred CcccEEEEeccccceeeEEecCCCCCCccceeEeccccccccC
Confidence 9999999999999999999999999999999999999999984
No 7
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=2.9e-29 Score=278.65 Aligned_cols=287 Identities=22% Similarity=0.270 Sum_probs=211.3
Q ss_pred cceEeeecCCCCceEEEeecCCCCcCC-CCCCcCccCCCceEEEEEcCCceeeeeeeecchHHHHHHHcCCCcccccccc
Q 007291 147 GLPVTGSIPECINGVYLRNGANPLFEP-VAGHHFFDGDGMVHAVTIGNGSASYACRFTETQRLMQERELGRPVFPKAIGE 225 (609)
Q Consensus 147 ~L~V~G~IP~~L~G~~~RNGPnp~f~p-~~~~H~FDGDGMvha~~f~~G~a~y~~RfV~T~~~~~E~~~Gr~~~~~~~g~ 225 (609)
.+++.|.||.||+|+++||||+.+-.+ ...+|||||-+++|++++.||++.|++||++|+.|+......|.+..+ |++
T Consensus 36 ~~~~~g~ip~wL~g~~lrn~pg~~~~g~~~~~h~fd~~~~~~~~~~~dg~~~~~~~~~~s~~y~~~~~p~r~v~~~-f~~ 114 (582)
T KOG1285|consen 36 ECTVKGSIPKWLDGTLLRNGPGLFTVGEEKYNHLFDGPALLHAFHFLDGRVYYSSRYLESDPYKKTVDPNRIVSGE-FAP 114 (582)
T ss_pred ccccccccCccccccccCCCCcccccCcccccccccchhhhhheeecCCeEEEEeeecccCCcccccccceeeecc-ccc
Confidence 488999999999999999999965323 457899999999999999999999999999999999876666665433 232
Q ss_pred cCCCCchhhhHHhhhhccccccCCCCCCccceeeeeee-CCeEEEEEcCCccEEEecCCCCCcccceeecccCc-ccc-c
Q 007291 226 LHGHNGIGRLLLFYARGLFGLVDHKQGTGVANAGLVYF-NNRILAMSEDDLPYQVRITPSGDLETVGRYNFNHQ-LKS-T 302 (609)
Q Consensus 226 ~~g~~g~ar~~~~~~r~~~g~~~~~~~~~~ANT~vv~~-~grLlAl~E~g~Py~ldi~p~~tLeT~G~~df~g~-L~~-~ 302 (609)
..+..-. ..+.+.|.+.-..+....+++||.++... +++|||.+|. |+.++|++ +||+|+..++|.+. +.. .
T Consensus 115 ~~~~pd~--~~~~~s~~~~~~~~g~~~rd~aN~~f~pv~g~~~~~gtet--~~~~ki~~-~tl~t~~~~~~~k~~v~~~~ 189 (582)
T KOG1285|consen 115 VAEFPDP--CKNIFSGFFPEFRNGESIRDNANPNFTPVGGHHLYAGTET--PHAVKIDP-GTLETTYKVRFTKTLVQEHT 189 (582)
T ss_pred cCCCCCc--cCcceeeeeeecccccccccCCCcceeecCCCeeEecCCC--ceeEEecC-cccceeEeeccccceeeeee
Confidence 2211110 01112222222233455688999999999 8999999998 88889988 99999999999984 433 6
Q ss_pred cccCCeecCCCCeeEE-EEee-ecc--CCcEEEEEEcCCCCCc---ce-----EE--E---eCCccccccccccCCCeEE
Q 007291 303 MIAHPKVDPVSKELFA-LSYD-VVQ--KPYLKYFRFSADGDKS---PD-----VE--I---HLPVPTMMHDFAITENFVV 365 (609)
Q Consensus 303 ~tAHPk~Dp~TGel~~-f~y~-~~~--~p~l~~~~~d~~G~~~---~~-----~~--i---~~~~p~~~HDFaiTenYvV 365 (609)
++|||+.|+. |++++ ++.. +.. ...++..+..+.|... .. .. + ..+.|.+||+|+.||||+|
T Consensus 190 ~gah~~~d~~-G~~~g~~g~~~~~~~~~r~~~~~~~p~~~~~~~~~~~v~~~~~~~a~~~dd~~~p~yvhs~G~tenyi~ 268 (582)
T KOG1285|consen 190 AGAHPHPDEI-GTVYGHFGIARFGLFFARALTVLKNPANGVGLANAGLVWFHNRLLAYSEDDLPYPGYVHSFGDTENYIG 268 (582)
T ss_pred cccCCcccCc-ccEEeeechhhccccccceeEEEecCCCccccccccceEeecceeeeccCCCccceEEeecCCccceEe
Confidence 8999999986 99998 6655 221 1123333333333221 11 11 1 3578999999999999999
Q ss_pred EecCCccccHHHHhc-------C---CCCeeecCCCCeEEEEEeCcCCCCCceEEEecCceeEEeccccccCCCCCcEEE
Q 007291 366 IPDQQVVFKLQEMIT-------G---GSPVIYDKNKKSRFGILAKNAKDSNDIIWIESPDTFCFHLWNAWEEPETDEIVV 435 (609)
Q Consensus 366 ~~d~p~~~~~~~m~~-------g---~~~~~~d~~~~tr~~VipR~~~~~~~v~w~e~p~~f~fH~~NA~Ee~~~~~vVv 435 (609)
++++|+.+++.+++. | ..++.|-++...++.++.+..+...+++- .++++.||++||||++ +.+|.
T Consensus 269 ~~e~~~~l~~~~~a~pk~~~~~g~~~~~~yd~~~~~~l~~~~~~~~~~k~~~~~~--~~~~~t~hh~na~eed--g~vi~ 344 (582)
T KOG1285|consen 269 RFEFPLRLNLSKFAHPKLDPVTGEWFADFYDWVPKPYLIYHKFSKEGGKSVPVEI--FPSFPTFHHDNAFEED--GCVVP 344 (582)
T ss_pred EecCCcccchhhhccCcccccccchhhhhhcccCCCcEEEEEeccccCccCccee--ccCcceEEEeeeeccc--CceEE
Confidence 999999999998873 2 23467888889999999998754333332 3449999999999997 67888
Q ss_pred EEeecCCCc
Q 007291 436 IGSCMTPAD 444 (609)
Q Consensus 436 ~~~~~~~~d 444 (609)
+.|++.+..
T Consensus 345 D~~~~~~~~ 353 (582)
T KOG1285|consen 345 DLCVYFDLS 353 (582)
T ss_pred EEEEEechh
Confidence 888776554
No 8
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=76.76 E-value=1.1e+02 Score=32.66 Aligned_cols=99 Identities=22% Similarity=0.328 Sum_probs=66.7
Q ss_pred eCCeEEEEEcCC----ccEEEecCCC-CCcccceeecccCccccccccCCeecCCCCeeEEEEeeeccCCcEEEEEEcCC
Q 007291 263 FNNRILAMSEDD----LPYQVRITPS-GDLETVGRYNFNHQLKSTMIAHPKVDPVSKELFALSYDVVQKPYLKYFRFSAD 337 (609)
Q Consensus 263 ~~grLlAl~E~g----~Py~ldi~p~-~tLeT~G~~df~g~L~~~~tAHPk~Dp~TGel~~f~y~~~~~p~l~~~~~d~~ 337 (609)
-+++|||..|.+ .-..++++++ ++|+-+++..-.|. -..|-.+||....|+.-.|. ...+..|.++.+
T Consensus 47 ~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~----~p~~i~~~~~g~~l~vany~---~g~v~v~~l~~~ 119 (345)
T PF10282_consen 47 DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS----SPCHIAVDPDGRFLYVANYG---GGSVSVFPLDDD 119 (345)
T ss_dssp TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS----CEEEEEECTTSSEEEEEETT---TTEEEEEEECTT
T ss_pred CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC----CcEEEEEecCCCEEEEEEcc---CCeEEEEEccCC
Confidence 357899999863 3344445565 78888887654443 34577789988888888886 355899999999
Q ss_pred CCCcceEE-EeC---------CccccccccccCC--CeEEEec
Q 007291 338 GDKSPDVE-IHL---------PVPTMMHDFAITE--NFVVIPD 368 (609)
Q Consensus 338 G~~~~~~~-i~~---------~~p~~~HDFaiTe--nYvV~~d 368 (609)
|.+..... +.. ......|...+++ +|+++++
T Consensus 120 g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d 162 (345)
T PF10282_consen 120 GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD 162 (345)
T ss_dssp SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE
T ss_pred cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe
Confidence 98755432 211 2357789888884 4777765
No 9
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=74.35 E-value=23 Score=38.68 Aligned_cols=75 Identities=20% Similarity=0.342 Sum_probs=48.1
Q ss_pred CCCCceEEEeeccCCCCcCcEEEEecCCCCeEEEEcCCCccCCccEeeecCCCCCCCCCCcEEEEEEEeCCCCceEEEEE
Q 007291 495 GRKTQFAYLAIAEPWPKVSGFAKVDLSSGEVKKYFYGDNKYGGEPFFLPRDANNSENEDDGYILAFVHDEKTWKSELQIV 574 (609)
Q Consensus 495 Gr~~Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~~~~~~~EDDGyLLs~V~d~~~~~SeL~Vl 574 (609)
....||+|.+..+ ..|.++|+.++++..- . ..+.+|.=|.=. .|+-||++.-+.. ..+.||
T Consensus 45 s~Dgr~~yv~~rd-----g~vsviD~~~~~~v~~-i---~~G~~~~~i~~s------~DG~~~~v~n~~~----~~v~v~ 105 (369)
T PF02239_consen 45 SPDGRYLYVANRD-----GTVSVIDLATGKVVAT-I---KVGGNPRGIAVS------PDGKYVYVANYEP----GTVSVI 105 (369)
T ss_dssp TT-SSEEEEEETT-----SEEEEEETTSSSEEEE-E---E-SSEEEEEEE--------TTTEEEEEEEET----TEEEEE
T ss_pred cCCCCEEEEEcCC-----CeEEEEECCcccEEEE-E---ecCCCcceEEEc------CCCCEEEEEecCC----CceeEe
Confidence 4567899998643 4799999999985432 1 234555545432 3556887776653 479999
Q ss_pred eCCCCCeeEEEEcC
Q 007291 575 NAMNLQLEASIKLP 588 (609)
Q Consensus 575 DA~~l~~VArv~LP 588 (609)
|+++|+++.++...
T Consensus 106 D~~tle~v~~I~~~ 119 (369)
T PF02239_consen 106 DAETLEPVKTIPTG 119 (369)
T ss_dssp ETTT--EEEEEE--
T ss_pred ccccccceeecccc
Confidence 99999999888764
No 10
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=72.78 E-value=1.5e+02 Score=32.30 Aligned_cols=231 Identities=13% Similarity=0.161 Sum_probs=117.4
Q ss_pred ccccccccCCeecCCCCeeEEEEeeeccC---CcEEE-EEEcCCCCCcceEEEeCCc------cccccccccCCCeEEEe
Q 007291 298 QLKSTMIAHPKVDPVSKELFALSYDVVQK---PYLKY-FRFSADGDKSPDVEIHLPV------PTMMHDFAITENFVVIP 367 (609)
Q Consensus 298 ~L~~~~tAHPk~Dp~TGel~~f~y~~~~~---p~l~~-~~~d~~G~~~~~~~i~~~~------p~~~HDFaiTenYvV~~ 367 (609)
.++..+.+|.-+.|+..+++.-+.-..+. ..-.+ -.+|.. ++....+|.+|. -.+-+.|++|.+
T Consensus 32 mi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~-TL~~~~EI~iP~k~R~~~~~~~~~~~ls~d----- 105 (342)
T PF06433_consen 32 MIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ-TLSPTGEIEIPPKPRAQVVPYKNMFALSAD----- 105 (342)
T ss_dssp EEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT-TTEEEEEEEETTS-B--BS--GGGEEE-TT-----
T ss_pred EeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecC-cCcccceEecCCcchheecccccceEEccC-----
Confidence 34446777888888877777544222111 11111 123332 344555565553 134455555411
Q ss_pred cCCccccHHHHhcCCCCeeecCCCCeEEEEEeCcCCCCCceEEEecCceeEEeccccccCCCCCcEEEEEeecCCCcchh
Q 007291 368 DQQVVFKLQEMITGGSPVIYDKNKKSRFGILAKNAKDSNDIIWIESPDTFCFHLWNAWEEPETDEIVVIGSCMTPADSIF 447 (609)
Q Consensus 368 d~p~~~~~~~m~~g~~~~~~d~~~~tr~~VipR~~~~~~~v~w~e~p~~f~fH~~NA~Ee~~~~~vVv~~~~~~~~d~~~ 447 (609)
|.-.++|+-.--+-+.||+-.++ ..++-+++|.|....- +.++ . +...|-.
T Consensus 106 -------------gk~~~V~N~TPa~SVtVVDl~~~--kvv~ei~~PGC~~iyP---~~~~---~--F~~lC~D------ 156 (342)
T PF06433_consen 106 -------------GKFLYVQNFTPATSVTVVDLAAK--KVVGEIDTPGCWLIYP---SGNR---G--FSMLCGD------ 156 (342)
T ss_dssp -------------SSEEEEEEESSSEEEEEEETTTT--EEEEEEEGTSEEEEEE---EETT---E--EEEEETT------
T ss_pred -------------CcEEEEEccCCCCeEEEEECCCC--ceeeeecCCCEEEEEe---cCCC---c--eEEEecC------
Confidence 22234555556689999998764 3578899999975542 2221 2 2244542
Q ss_pred hhccccccCceEEEEEeCCCCCeeE--EEeeccCCcccccCcccCCccCCCCCceEEEeeccCCCCcCcEEEEecCCCCe
Q 007291 448 NECDESLKSVLSEIRLNLKTGESTR--RQILSESDQVNLEAGMVNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGEV 525 (609)
Q Consensus 448 ~~~~~~l~~~l~r~ridl~tG~~~~--~~l~~~~~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~p~~~~~givK~Dl~tg~~ 525 (609)
+.|..++||- .|+.++ ..+.. ..-|-.-.++.|.+...+|.|... + .-|.-+|+...++
T Consensus 157 --------Gsl~~v~Ld~-~Gk~~~~~t~~F~----~~~dp~f~~~~~~~~~~~~~F~Sy-~-----G~v~~~dlsg~~~ 217 (342)
T PF06433_consen 157 --------GSLLTVTLDA-DGKEAQKSTKVFD----PDDDPLFEHPAYSRDGGRLYFVSY-E-----GNVYSADLSGDSA 217 (342)
T ss_dssp --------SCEEEEEETS-TSSEEEEEEEESS----TTTS-B-S--EEETTTTEEEEEBT-T-----SEEEEEEETTSSE
T ss_pred --------CceEEEEECC-CCCEeEeeccccC----CCCcccccccceECCCCeEEEEec-C-----CEEEEEeccCCcc
Confidence 4456666663 355442 23332 112322334556677778888532 1 1244456655442
Q ss_pred ---EEEEcC------CCccCC--ccEeeecCCCCCCCCCCcEEEEEEEeCCCC-----ceEEEEEeCCCCCeeEEEEcCC
Q 007291 526 ---KKYFYG------DNKYGG--EPFFLPRDANNSENEDDGYILAFVHDEKTW-----KSELQIVNAMNLQLEASIKLPS 589 (609)
Q Consensus 526 ---~~~~~g------~g~~~g--EPvFVPr~~~~~~~EDDGyLLs~V~d~~~~-----~SeL~VlDA~~l~~VArv~LP~ 589 (609)
..|+.- +++.+| +++= -....|-|.+++|....+ .+|+||+|.++=+-|+|+.|++
T Consensus 218 ~~~~~~~~~t~~e~~~~WrPGG~Q~~A--------~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~ 289 (342)
T PF06433_consen 218 KFGKPWSLLTDAEKADGWRPGGWQLIA--------YHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH 289 (342)
T ss_dssp EEEEEEESS-HHHHHTTEEE-SSS-EE--------EETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE
T ss_pred cccCcccccCccccccCcCCcceeeee--------eccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC
Confidence 234321 111110 1111 112346666677765433 4799999999999999999975
Q ss_pred c
Q 007291 590 R 590 (609)
Q Consensus 590 r 590 (609)
.
T Consensus 290 ~ 290 (342)
T PF06433_consen 290 P 290 (342)
T ss_dssp E
T ss_pred c
Confidence 4
No 11
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=62.53 E-value=2.4e+02 Score=30.77 Aligned_cols=269 Identities=17% Similarity=0.211 Sum_probs=141.1
Q ss_pred CCeEEEEEcCCc-----cEEEecCCC-CCcccceeecccCccccccccCCeecCCCCeeEEEEeeeccCCcEEEEEEcCC
Q 007291 264 NNRILAMSEDDL-----PYQVRITPS-GDLETVGRYNFNHQLKSTMIAHPKVDPVSKELFALSYDVVQKPYLKYFRFSAD 337 (609)
Q Consensus 264 ~grLlAl~E~g~-----Py~ldi~p~-~tLeT~G~~df~g~L~~~~tAHPk~Dp~TGel~~f~y~~~~~p~l~~~~~d~~ 337 (609)
..+||+..|.|. -|++| ++ |.|+-+++....|.- +.|=-+|+..--+|.-+|.. ..+.++.+.++
T Consensus 51 ~~~LY~v~~~~~~ggvaay~iD--~~~G~Lt~ln~~~~~g~~----p~yvsvd~~g~~vf~AnY~~---g~v~v~p~~~d 121 (346)
T COG2706 51 QRHLYVVNEPGEEGGVAAYRID--PDDGRLTFLNRQTLPGSP----PCYVSVDEDGRFVFVANYHS---GSVSVYPLQAD 121 (346)
T ss_pred CCEEEEEEecCCcCcEEEEEEc--CCCCeEEEeeccccCCCC----CeEEEECCCCCEEEEEEccC---ceEEEEEcccC
Confidence 456888877522 46666 43 889988887655532 36777898755677778874 45899999999
Q ss_pred CCCcceEEE-eCCcc----------ccccccccCCCeEEEecCCccccHHHHhcCCCCeeecCCCCeEEEEEeCcCCCCC
Q 007291 338 GDKSPDVEI-HLPVP----------TMMHDFAITENFVVIPDQQVVFKLQEMITGGSPVIYDKNKKSRFGILAKNAKDSN 406 (609)
Q Consensus 338 G~~~~~~~i-~~~~p----------~~~HDFaiTenYvV~~d~p~~~~~~~m~~g~~~~~~d~~~~tr~~VipR~~~~~~ 406 (609)
|.+...+.+ .-..+ +=++.|--+.+|++.+|.-.. ..+.|+-+ -|.+.+.. ..
T Consensus 122 G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D----------ri~~y~~~----dg~L~~~~--~~ 185 (346)
T COG2706 122 GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD----------RIFLYDLD----DGKLTPAD--PA 185 (346)
T ss_pred CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc----------eEEEEEcc----cCcccccc--cc
Confidence 988655333 11111 334445555567777754321 11122211 11111110 00
Q ss_pred ceEEEecCceeEEeccccccCCCCCcEEEEEeecCCCcchhhhccccccCceEEEEEeCCCCCeeEEEeeccCCcccccC
Q 007291 407 DIIWIESPDTFCFHLWNAWEEPETDEIVVIGSCMTPADSIFNECDESLKSVLSEIRLNLKTGESTRRQILSESDQVNLEA 486 (609)
Q Consensus 407 ~v~w~e~p~~f~fH~~NA~Ee~~~~~vVv~~~~~~~~d~~~~~~~~~l~~~l~r~ridl~tG~~~~~~l~~~~~~~~~Ef 486 (609)
.++-=.-|-..+||- ++++.- -.| .|.+.+.-|..|...|+.++-+..+ ..+-+|
T Consensus 186 ~v~~G~GPRHi~FHp--------n~k~aY-~v~-------------EL~stV~v~~y~~~~g~~~~lQ~i~---tlP~dF 240 (346)
T COG2706 186 EVKPGAGPRHIVFHP--------NGKYAY-LVN-------------ELNSTVDVLEYNPAVGKFEELQTID---TLPEDF 240 (346)
T ss_pred ccCCCCCcceEEEcC--------CCcEEE-EEe-------------ccCCEEEEEEEcCCCceEEEeeeec---cCcccc
Confidence 010001233566771 234322 111 2345666677777778876544432 233344
Q ss_pred cccCCc---cCCCCCceEEEeeccCCCCcCcEEEEecCCCCe--EEEEcCCCccCCccEeeecCCCC---CCCCCCcEEE
Q 007291 487 GMVNRN---SLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGEV--KKYFYGDNKYGGEPFFLPRDANN---SENEDDGYIL 558 (609)
Q Consensus 487 P~In~~---~~Gr~~Ry~Y~~~~~p~~~~~givK~Dl~tg~~--~~~~~g~g~~~gEPvFVPr~~~~---~~~EDDGyLL 558 (609)
.--+.. .+....||.|..... ...-.+.++|-.+|.. ..|+.-+|+++-.=-|-|. +. .+.|+..=|.
T Consensus 241 ~g~~~~aaIhis~dGrFLYasNRg--~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~--g~~Liaa~q~sd~i~ 316 (346)
T COG2706 241 TGTNWAAAIHISPDGRFLYASNRG--HDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPS--GRFLIAANQKSDNIT 316 (346)
T ss_pred CCCCceeEEEECCCCCEEEEecCC--CCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCC--CCEEEEEccCCCcEE
Confidence 443332 244568999986422 1234567888888852 3344445554322222221 10 1234444466
Q ss_pred EEEEeCCCCceEEEEEeCCCCCeeEEEE
Q 007291 559 AFVHDEKTWKSELQIVNAMNLQLEASIK 586 (609)
Q Consensus 559 s~V~d~~~~~SeL~VlDA~~l~~VArv~ 586 (609)
.|--|.++++=.++--|+.--+|||.+-
T Consensus 317 vf~~d~~TG~L~~~~~~~~~p~Pvcv~f 344 (346)
T COG2706 317 VFERDKETGRLTLLGRYAVVPEPVCVKF 344 (346)
T ss_pred EEEEcCCCceEEecccccCCCCcEEEEE
Confidence 6777777776555555565566777654
No 12
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=35.74 E-value=6.2e+02 Score=27.66 Aligned_cols=246 Identities=13% Similarity=0.138 Sum_probs=119.9
Q ss_pred CccEEEecCCCCCcccceeecccCccccccccCCeecCCCCeeEEEEeeecc----CCcEEEEEEcCC-CCCcceEEEeC
Q 007291 274 DLPYQVRITPSGDLETVGRYNFNHQLKSTMIAHPKVDPVSKELFALSYDVVQ----KPYLKYFRFSAD-GDKSPDVEIHL 348 (609)
Q Consensus 274 g~Py~ldi~p~~tLeT~G~~df~g~L~~~~tAHPk~Dp~TGel~~f~y~~~~----~p~l~~~~~d~~-G~~~~~~~i~~ 348 (609)
+.-|.|| . .+++.+|..+-+ + ..|..+-|+.+++|....-..+ +-.=.+-++|.. ++...+.+++
T Consensus 27 ~~v~ViD--~-~~~~v~g~i~~G-~-----~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p- 96 (352)
T TIGR02658 27 TQVYTID--G-EAGRVLGMTDGG-F-----LPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP- 96 (352)
T ss_pred ceEEEEE--C-CCCEEEEEEEcc-C-----CCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC-
Confidence 4567777 4 688888876643 2 3344567776676654431100 000122334432 2223223222
Q ss_pred Cc-----cccccccccCCCeEEEecCCccccHHHHhcCCCCeeecCCCCeEEEEEeCcCCCCCceEEEecCceeEEeccc
Q 007291 349 PV-----PTMMHDFAITENFVVIPDQQVVFKLQEMITGGSPVIYDKNKKSRFGILAKNAKDSNDIIWIESPDTFCFHLWN 423 (609)
Q Consensus 349 ~~-----p~~~HDFaiTenYvV~~d~p~~~~~~~m~~g~~~~~~d~~~~tr~~VipR~~~~~~~v~w~e~p~~f~fH~~N 423 (609)
+. ..+-+.|+++.+ |...+.++.+....+.||+-.++ ..++-+++|.| .|...
T Consensus 97 ~~p~~~~~~~~~~~~ls~d------------------gk~l~V~n~~p~~~V~VvD~~~~--kvv~ei~vp~~--~~vy~ 154 (352)
T TIGR02658 97 EGPRFLVGTYPWMTSLTPD------------------NKTLLFYQFSPSPAVGVVDLEGK--AFVRMMDVPDC--YHIFP 154 (352)
T ss_pred CCchhhccCccceEEECCC------------------CCEEEEecCCCCCEEEEEECCCC--cEEEEEeCCCC--cEEEE
Confidence 12 334445555433 22335566666788999998764 46677888864 34444
Q ss_pred cccCCCCCcEEEEEeecCCCcchhhhccccccCceEEEEEeCCCCCeeE--EEeeccCCcccccCcccCCccCCCCCceE
Q 007291 424 AWEEPETDEIVVIGSCMTPADSIFNECDESLKSVLSEIRLNLKTGESTR--RQILSESDQVNLEAGMVNRNSLGRKTQFA 501 (609)
Q Consensus 424 A~Ee~~~~~vVv~~~~~~~~d~~~~~~~~~l~~~l~r~ridl~tG~~~~--~~l~~~~~~~~~EfP~In~~~~Gr~~Ry~ 501 (609)
+=|+. ..++ |.. +.+..++++- +|++.. .++...+.+.-.+-| .|.-+..++.
T Consensus 155 t~e~~---~~~~---~~D--------------g~~~~v~~d~-~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~ 209 (352)
T TIGR02658 155 TANDT---FFMH---CRD--------------GSLAKVGYGT-KGNPKIKPTEVFHPEDEYLINHP----AYSNKSGRLV 209 (352)
T ss_pred ecCCc---cEEE---eec--------------CceEEEEecC-CCceEEeeeeeecCCccccccCC----ceEcCCCcEE
Confidence 43332 2221 211 2334444442 233321 122211111112223 2333345677
Q ss_pred EEeeccCCCCcCcEEEEecCCCCe---EEEEc---C---CCccC--CccEeeecCCCCCCCCCCcEEEEEEEeCC-----
Q 007291 502 YLAIAEPWPKVSGFAKVDLSSGEV---KKYFY---G---DNKYG--GEPFFLPRDANNSENEDDGYILAFVHDEK----- 565 (609)
Q Consensus 502 Y~~~~~p~~~~~givK~Dl~tg~~---~~~~~---g---~g~~~--gEPvFVPr~~~~~~~EDDGyLLs~V~d~~----- 565 (609)
|... + ..|.-+|+.+.++ ..|.. + +|.-+ -|| +.- .-|.+.|.+..|...
T Consensus 210 ~vs~-e-----G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~--ia~------~~dg~~lyV~~~~~~~~thk 275 (352)
T TIGR02658 210 WPTY-T-----GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ--VAY------HRARDRIYLLADQRAKWTHK 275 (352)
T ss_pred EEec-C-----CeEEEEecCCCcceecceeeeccccccccccCCCccee--EEE------cCCCCEEEEEecCCcccccc
Confidence 7543 2 4566677654332 12221 1 11111 234 221 135566666565333
Q ss_pred CCceEEEEEeCCCCCeeEEEEcCCc
Q 007291 566 TWKSELQIVNAMNLQLEASIKLPSR 590 (609)
Q Consensus 566 ~~~SeL~VlDA~~l~~VArv~LP~r 590 (609)
....++.|+|+++.+.++++.+-.+
T Consensus 276 ~~~~~V~ViD~~t~kvi~~i~vG~~ 300 (352)
T TIGR02658 276 TASRFLFVVDAKTGKRLRKIELGHE 300 (352)
T ss_pred CCCCEEEEEECCCCeEEEEEeCCCc
Confidence 3346999999999999999998653
No 13
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=30.87 E-value=82 Score=34.39 Aligned_cols=86 Identities=16% Similarity=0.207 Sum_probs=45.4
Q ss_pred cCcccCCccCCCCCceEEEee-ccCCCCcCcEEEEecCCCCeEE-EEcCCCccCCccEeeecCCCCCCCCCCcEEEEEEE
Q 007291 485 EAGMVNRNSLGRKTQFAYLAI-AEPWPKVSGFAKVDLSSGEVKK-YFYGDNKYGGEPFFLPRDANNSENEDDGYILAFVH 562 (609)
Q Consensus 485 EfP~In~~~~Gr~~Ry~Y~~~-~~p~~~~~givK~Dl~tg~~~~-~~~g~g~~~gEPvFVPr~~~~~~~EDDGyLLs~V~ 562 (609)
-|-+.+|+ .||+|... ..+ ..+.|.-+|.++-++.. ...+++.- ++.+-= ..|.-++..-+.
T Consensus 272 lFi~thP~-----s~~vwvd~~~~~--~~~~v~viD~~tl~~~~~i~~~~~~~---~~h~ef------~~dG~~v~vS~~ 335 (369)
T PF02239_consen 272 LFIKTHPD-----SRYVWVDTFLNP--DADTVQVIDKKTLKVVKTITPGPGKR---VVHMEF------NPDGKEVWVSVW 335 (369)
T ss_dssp --EE--TT------SEEEEE-TT-S--SHT-EEEEECCGTEEEE-HHHHHT-----EEEEEE-------TTSSEEEEEEE
T ss_pred ceeecCCC-----CccEEeeccCCC--CCceEEEEECcCcceeEEEeccCCCc---EeccEE------CCCCCEEEEEEe
Confidence 45555554 56999862 222 36789999999986432 22222211 222221 123345555555
Q ss_pred eCCCCceEEEEEeCCCCCeeEEEEcCC
Q 007291 563 DEKTWKSELQIVNAMNLQLEASIKLPS 589 (609)
Q Consensus 563 d~~~~~SeL~VlDA~~l~~VArv~LP~ 589 (609)
|.+. +|+|+|++++++++++.++.
T Consensus 336 ~~~~---~i~v~D~~Tl~~~~~i~~~t 359 (369)
T PF02239_consen 336 DGNG---AIVVYDAKTLKEKKRIPVPT 359 (369)
T ss_dssp --TT---EEEEEETTTTEEEEEEE--S
T ss_pred cCCC---EEEEEECCCcEEEEEEEeeC
Confidence 5433 99999999999999999653
No 14
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=27.41 E-value=7.7e+02 Score=26.17 Aligned_cols=77 Identities=14% Similarity=0.138 Sum_probs=43.7
Q ss_pred cCceEEEEEeCCCCCeeEEEeeccCCcccccCcc-cCCccCCCCCceEEEeeccCCCCcCcEEEEecCCCCeEEEEcCCC
Q 007291 455 KSVLSEIRLNLKTGESTRRQILSESDQVNLEAGM-VNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGEVKKYFYGDN 533 (609)
Q Consensus 455 ~~~l~r~ridl~tG~~~~~~l~~~~~~~~~EfP~-In~~~~Gr~~Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~~~~g~g 533 (609)
...+.-+.||..+|+.+...... ...++|+ +. .....||.|.+..+.. -=.+.++|.++|....-. ..
T Consensus 266 ~~sI~vf~~d~~~g~l~~~~~~~----~~G~~Pr~~~---~s~~g~~l~Va~~~s~--~v~vf~~d~~tG~l~~~~--~~ 334 (345)
T PF10282_consen 266 SNSISVFDLDPATGTLTLVQTVP----TGGKFPRHFA---FSPDGRYLYVANQDSN--TVSVFDIDPDTGKLTPVG--SS 334 (345)
T ss_dssp TTEEEEEEECTTTTTEEEEEEEE----ESSSSEEEEE---E-TTSSEEEEEETTTT--EEEEEEEETTTTEEEEEE--EE
T ss_pred CCEEEEEEEecCCCceEEEEEEe----CCCCCccEEE---EeCCCCEEEEEecCCC--eEEEEEEeCCCCcEEEec--cc
Confidence 34577888988999887654442 2344553 11 1234578887764421 124567788898755431 11
Q ss_pred ccCCccEee
Q 007291 534 KYGGEPFFL 542 (609)
Q Consensus 534 ~~~gEPvFV 542 (609)
.-..+|++|
T Consensus 335 ~~~~~p~ci 343 (345)
T PF10282_consen 335 VPIPSPVCI 343 (345)
T ss_dssp EESSSEEEE
T ss_pred ccCCCCEEE
Confidence 345666655
No 15
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=27.11 E-value=99 Score=34.21 Aligned_cols=67 Identities=13% Similarity=0.325 Sum_probs=43.7
Q ss_pred cceeeeeeeCCeEEEEEcCCccEEEecCCCCCcccceeecccCccccccccCCeecCCCCeeEEEEeeeccCCcEEEEEE
Q 007291 255 VANAGLVYFNNRILAMSEDDLPYQVRITPSGDLETVGRYNFNHQLKSTMIAHPKVDPVSKELFALSYDVVQKPYLKYFRF 334 (609)
Q Consensus 255 ~ANT~vv~~~grLlAl~E~g~Py~ldi~p~~tLeT~G~~df~g~L~~~~tAHPk~Dp~TGel~~f~y~~~~~p~l~~~~~ 334 (609)
.+-|+.-.+..|.+|||.- -.|. |.++..++|..=. .--|-+|++|+-+|-.|=+ ..-++||++
T Consensus 230 i~tTGfsr~seRq~aLwdp---~nl~-------eP~~~~elDtSnG---vl~PFyD~dt~ivYl~GKG---D~~IRYyEi 293 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALWDP---NNLE-------EPIALQELDTSNG---VLLPFYDPDTSIVYLCGKG---DSSIRYFEI 293 (472)
T ss_pred eeeeccccccccceeccCc---cccc-------CcceeEEeccCCc---eEEeeecCCCCEEEEEecC---CcceEEEEe
Confidence 5778888889999999973 2222 1244444443211 1128899999887777643 456899999
Q ss_pred cCC
Q 007291 335 SAD 337 (609)
Q Consensus 335 d~~ 337 (609)
..+
T Consensus 294 t~d 296 (472)
T KOG0303|consen 294 TNE 296 (472)
T ss_pred cCC
Confidence 764
No 16
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=26.99 E-value=45 Score=34.02 Aligned_cols=37 Identities=14% Similarity=0.496 Sum_probs=29.0
Q ss_pred eeeeeCCeEEEE-EcCCccEEEecCCCCCcccceeecccCc
Q 007291 259 GLVYFNNRILAM-SEDDLPYQVRITPSGDLETVGRYNFNHQ 298 (609)
Q Consensus 259 ~vv~~~grLlAl-~E~g~Py~ldi~p~~tLeT~G~~df~g~ 298 (609)
++..+++.+++| |..|..|..| + .||+++|++.|.|+
T Consensus 95 Git~~gd~~y~LTw~egvaf~~d--~-~t~~~lg~~~y~Ge 132 (262)
T COG3823 95 GITKLGDYFYQLTWKEGVAFKYD--A-DTLEELGRFSYEGE 132 (262)
T ss_pred ceeeccceEEEEEeccceeEEEC--h-HHhhhhcccccCCc
Confidence 355667888886 6777777766 7 89999999999875
No 17
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=26.92 E-value=2.3e+02 Score=29.83 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=22.7
Q ss_pred CCCcEEEEEEEeCC-----CCceEEEEEeCCCCCeeEEEEcC
Q 007291 552 EDDGYILAFVHDEK-----TWKSELQIVNAMNLQLEASIKLP 588 (609)
Q Consensus 552 EDDGyLLs~V~d~~-----~~~SeL~VlDA~~l~~VArv~LP 588 (609)
+.+||=|+ +|.+ ++.+.|..+|.++++.+-++.+.
T Consensus 129 ~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~ 168 (264)
T PF05096_consen 129 PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT 168 (264)
T ss_dssp SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E
T ss_pred CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE
Confidence 56899888 6653 46789999999999987777664
No 18
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=26.51 E-value=1.3e+02 Score=21.06 Aligned_cols=28 Identities=14% Similarity=0.383 Sum_probs=22.0
Q ss_pred CceEEEEEeCCCCCeeEEEEcCCcCCCCc
Q 007291 567 WKSELQIVNAMNLQLEASIKLPSRVPYGF 595 (609)
Q Consensus 567 ~~SeL~VlDA~~l~~VArv~LP~rVP~GF 595 (609)
+...+.|||+.+.+.+.++.+ ..-|.++
T Consensus 12 ~~~~v~~id~~~~~~~~~i~v-g~~P~~i 39 (42)
T TIGR02276 12 GSNTVSVIDTATNKVIATIPV-GGYPFGV 39 (42)
T ss_pred CCCEEEEEECCCCeEEEEEEC-CCCCceE
Confidence 345788999999999999998 4666654
No 19
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=25.43 E-value=1.4e+02 Score=31.43 Aligned_cols=90 Identities=16% Similarity=0.187 Sum_probs=46.1
Q ss_pred EEeCCCCCeeEEEeeccCCcccccCcccCC-ccCCCCCceEEEeeccCCCCcCcEEEEecCCCCeEEEEcCCCccCCccE
Q 007291 462 RLNLKTGESTRRQILSESDQVNLEAGMVNR-NSLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGEVKKYFYGDNKYGGEPF 540 (609)
Q Consensus 462 ridl~tG~~~~~~l~~~~~~~~~EfP~In~-~~~Gr~~Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~~~~g~g~~~gEPv 540 (609)
.+|+++-+..++--.. +.+...+++|+ .|. .-+.|+.+.. -+.|+++|.+||++..|.-=.+
T Consensus 153 ~~dP~~f~~~~~i~V~---~~g~pv~~LNELE~i---~G~IyANVW~----td~I~~Idp~tG~V~~~iDls~------- 215 (264)
T PF05096_consen 153 FLDPETFKEVRTIQVT---DNGRPVSNLNELEYI---NGKIYANVWQ----TDRIVRIDPETGKVVGWIDLSG------- 215 (264)
T ss_dssp EE-TTT-SEEEEEE-E---ETTEE---EEEEEEE---TTEEEEEETT----SSEEEEEETTT-BEEEEEE-HH-------
T ss_pred EECCcccceEEEEEEE---ECCEECCCcEeEEEE---cCEEEEEeCC----CCeEEEEeCCCCeEEEEEEhhH-------
Confidence 3566655443322111 23445666666 344 2378988754 3799999999999887732111
Q ss_pred eeecCCC-CCCCCCCcEEEEEEEeCCCCc
Q 007291 541 FLPRDAN-NSENEDDGYILAFVHDEKTWK 568 (609)
Q Consensus 541 FVPr~~~-~~~~EDDGyLLs~V~d~~~~~ 568 (609)
.+|+... ....-++.+|=...||+++++
T Consensus 216 L~~~~~~~~~~~~~~dVLNGIAyd~~~~~ 244 (264)
T PF05096_consen 216 LRPEVGRDKSRQPDDDVLNGIAYDPETDR 244 (264)
T ss_dssp HHHHHTSTTST--TTS-EEEEEEETTTTE
T ss_pred hhhcccccccccccCCeeEeEeEeCCCCE
Confidence 1222100 011224788989999987765
No 20
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=25.10 E-value=8.9e+02 Score=26.11 Aligned_cols=103 Identities=17% Similarity=0.201 Sum_probs=57.9
Q ss_pred EEEEEeCCCCCeeEEEeeccCCcccccCcccCCccCCCCCceEEEeeccCCC-----CcCcEEEEecCCCCeE---EEEc
Q 007291 459 SEIRLNLKTGESTRRQILSESDQVNLEAGMVNRNSLGRKTQFAYLAIAEPWP-----KVSGFAKVDLSSGEVK---KYFY 530 (609)
Q Consensus 459 ~r~ridl~tG~~~~~~l~~~~~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~p~~-----~~~givK~Dl~tg~~~---~~~~ 530 (609)
.-..+|++||+.....+.. +.+-.|. +...-..+.|....+... ....|.++++.++... .|.-
T Consensus 151 ~l~v~Dl~tg~~l~d~i~~------~~~~~~~--W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~ 222 (414)
T PF02897_consen 151 TLRVFDLETGKFLPDGIEN------PKFSSVS--WSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEE 222 (414)
T ss_dssp EEEEEETTTTEEEEEEEEE------EESEEEE--ECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-
T ss_pred EEEEEECCCCcCcCCcccc------cccceEE--EeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEee
Confidence 3455799999765444431 1111111 223334466655433211 1567888898887532 3422
Q ss_pred CCCccCCccE-eeecCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCC
Q 007291 531 GDNKYGGEPF-FLPRDANNSENEDDGYILAFVHDEKTWKSELQIVNAMNL 579 (609)
Q Consensus 531 g~g~~~gEPv-FVPr~~~~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~~l 579 (609)
.+ +++ ||.-. ...|..||+..+....+ .|++.++|+.+-
T Consensus 223 ~~-----~~~~~~~~~----~s~d~~~l~i~~~~~~~-~s~v~~~d~~~~ 262 (414)
T PF02897_consen 223 PD-----EPFWFVSVS----RSKDGRYLFISSSSGTS-ESEVYLLDLDDG 262 (414)
T ss_dssp TT-----CTTSEEEEE----E-TTSSEEEEEEESSSS-EEEEEEEECCCT
T ss_pred cC-----CCcEEEEEE----ecCcccEEEEEEEcccc-CCeEEEEecccc
Confidence 22 333 55432 23577899988887666 899999999874
No 21
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=22.45 E-value=8.2e+02 Score=25.34 Aligned_cols=93 Identities=16% Similarity=0.177 Sum_probs=50.4
Q ss_pred eEEEEEc-CCccEEEecCCCCCcccceeecccCccccccccCCeecCCCCeeEEEEeeeccCCcEEEEEEcCCCCCcceE
Q 007291 266 RILAMSE-DDLPYQVRITPSGDLETVGRYNFNHQLKSTMIAHPKVDPVSKELFALSYDVVQKPYLKYFRFSADGDKSPDV 344 (609)
Q Consensus 266 rLlAl~E-~g~Py~ldi~p~~tLeT~G~~df~g~L~~~~tAHPk~Dp~TGel~~f~y~~~~~p~l~~~~~d~~G~~~~~~ 344 (609)
.||+..+ .+.-+.++++.++.|+.++.....+. ..|=.+||....+|.-+|. ...+.+|.++.+|......
T Consensus 48 ~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~-----p~~i~~~~~g~~l~v~~~~---~~~v~v~~~~~~g~~~~~~ 119 (330)
T PRK11028 48 HLYVGVRPEFRVLSYRIADDGALTFAAESPLPGS-----PTHISTDHQGRFLFSASYN---ANCVSVSPLDKDGIPVAPI 119 (330)
T ss_pred EEEEEECCCCcEEEEEECCCCceEEeeeecCCCC-----ceEEEECCCCCEEEEEEcC---CCeEEEEEECCCCCCCCce
Confidence 4555544 34444455544466665554433221 2244467776667766664 3557888888887653322
Q ss_pred EEeCCccccccccccCCC--eEEEe
Q 007291 345 EIHLPVPTMMHDFAITEN--FVVIP 367 (609)
Q Consensus 345 ~i~~~~p~~~HDFaiTen--YvV~~ 367 (609)
. .++.....|..+++.+ |+++.
T Consensus 120 ~-~~~~~~~~~~~~~~p~g~~l~v~ 143 (330)
T PRK11028 120 Q-IIEGLEGCHSANIDPDNRTLWVP 143 (330)
T ss_pred e-eccCCCcccEeEeCCCCCEEEEe
Confidence 1 1233345677777743 66544
No 22
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=21.80 E-value=4e+02 Score=29.11 Aligned_cols=82 Identities=11% Similarity=0.033 Sum_probs=46.7
Q ss_pred eEEEeeccCCCCcCcEEEEecCCCCeEEEEcCCCccCCccEeeecCCCCCCCCCCcEEEEEEEeC---CCCceEEEEEeC
Q 007291 500 FAYLAIAEPWPKVSGFAKVDLSSGEVKKYFYGDNKYGGEPFFLPRDANNSENEDDGYILAFVHDE---KTWKSELQIVNA 576 (609)
Q Consensus 500 y~Y~~~~~p~~~~~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~~~~~~~EDDGyLLs~V~d~---~~~~SeL~VlDA 576 (609)
++|.....-+...+.|.-+|..++++..- ..-|..+. ++..+++ ..=|+-+..|.. .++.-.+.|+|+
T Consensus 14 ~v~V~d~~~~~~~~~v~ViD~~~~~v~g~-i~~G~~P~---~~~spDg-----~~lyva~~~~~R~~~G~~~d~V~v~D~ 84 (352)
T TIGR02658 14 RVYVLDPGHFAATTQVYTIDGEAGRVLGM-TDGGFLPN---PVVASDG-----SFFAHASTVYSRIARGKRTDYVEVIDP 84 (352)
T ss_pred EEEEECCcccccCceEEEEECCCCEEEEE-EEccCCCc---eeECCCC-----CEEEEEeccccccccCCCCCEEEEEEC
Confidence 47765433223348899999999986543 22333322 2222211 122333222221 113347999999
Q ss_pred CCCCeeEEEEcCCc
Q 007291 577 MNLQLEASIKLPSR 590 (609)
Q Consensus 577 ~~l~~VArv~LP~r 590 (609)
+++++++++.+|-.
T Consensus 85 ~t~~~~~~i~~p~~ 98 (352)
T TIGR02658 85 QTHLPIADIELPEG 98 (352)
T ss_pred ccCcEEeEEccCCC
Confidence 99999999999833
No 23
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=21.47 E-value=5.4e+02 Score=25.32 Aligned_cols=78 Identities=26% Similarity=0.422 Sum_probs=45.0
Q ss_pred CceEEEeeccCCCCcCcEEEEecCCCCeEEEEcCCCccCCccEeeecCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCC
Q 007291 498 TQFAYLAIAEPWPKVSGFAKVDLSSGEVKKYFYGDNKYGGEPFFLPRDANNSENEDDGYILAFVHDEKTWKSELQIVNAM 577 (609)
Q Consensus 498 ~Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~~~~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~ 577 (609)
.++.|.+... -+.|..+|+.+++...... .+.......|-| |..+|++... ....|.|+|..
T Consensus 218 g~~~~~~~~~----~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~---------~g~~l~~~~~----~~~~i~v~d~~ 279 (300)
T TIGR03866 218 GKTAFVALGP----ANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTP---------DEKYLLTTNG----VSNDVSVIDVA 279 (300)
T ss_pred CCEEEEEcCC----CCeEEEEECCCCcEEEEEE-eCCCcceEEECC---------CCCEEEEEcC----CCCeEEEEECC
Confidence 4566765432 2468888999988654322 122222222322 2234443322 23469999999
Q ss_pred CCCeeEEEEcCCcCCCC
Q 007291 578 NLQLEASIKLPSRVPYG 594 (609)
Q Consensus 578 ~l~~VArv~LP~rVP~G 594 (609)
+.+.+.++++. .=|+|
T Consensus 280 ~~~~~~~~~~~-~~~~~ 295 (300)
T TIGR03866 280 ALKVIKSIKVG-RLPWG 295 (300)
T ss_pred CCcEEEEEEcc-cccce
Confidence 99999999885 44454
No 24
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=21.02 E-value=2.9e+02 Score=26.83 Aligned_cols=65 Identities=17% Similarity=0.193 Sum_probs=40.7
Q ss_pred CcEEEEecCCCCeEEEEcCCCccCCccEeeecCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCCeeEEEEcCCc
Q 007291 513 SGFAKVDLSSGEVKKYFYGDNKYGGEPFFLPRDANNSENEDDGYILAFVHDEKTWKSELQIVNAMNLQLEASIKLPSR 590 (609)
Q Consensus 513 ~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~~~~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~~l~~VArv~LP~r 590 (609)
..|..+|+.+|+. .|.+.-+.-.+.++..+- -++|+|++. +....|..+|+++-+.+.+..++..
T Consensus 3 g~l~~~d~~tG~~-~W~~~~~~~~~~~~~~~~-------~~~~~v~~~-----~~~~~l~~~d~~tG~~~W~~~~~~~ 67 (238)
T PF13360_consen 3 GTLSALDPRTGKE-LWSYDLGPGIGGPVATAV-------PDGGRVYVA-----SGDGNLYALDAKTGKVLWRFDLPGP 67 (238)
T ss_dssp SEEEEEETTTTEE-EEEEECSSSCSSEEETEE-------EETTEEEEE-----ETTSEEEEEETTTSEEEEEEECSSC
T ss_pred CEEEEEECCCCCE-EEEEECCCCCCCccceEE-------EeCCEEEEE-----cCCCEEEEEECCCCCEEEEeecccc
Confidence 3578899999874 343321110122221111 145777666 3667899999999999999998654
Done!