Query         007291
Match_columns 609
No_of_seqs    252 out of 1072
Neff          6.2 
Searched_HMMs 29240
Date          Mon Mar 25 22:05:40 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007291.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007291hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3npe_A 9-CIS-epoxycarotenoid d 100.0  5E-143  2E-147 1193.4  50.3  519   91-609     5-528 (529)
  2 2biw_A Apocarotenoid-cleaving  100.0  2E-117  6E-122  981.4  47.0  444  132-602    20-490 (490)
  3 3kvc_A Retinoid isomerohydrola 100.0  2E-111  6E-116  942.5  43.6  451  131-602    11-533 (533)
  4 1qks_A Cytochrome CD1 nitrite   62.3      84  0.0029   34.6  14.0  105  460-588   179-285 (567)
  5 3mbr_X Glutamine cyclotransfer  54.5      35  0.0012   33.7   8.2   27  499-527    31-57  (243)
  6 3nol_A Glutamine cyclotransfer  48.5      83  0.0028   31.4   9.9   96  461-588    68-165 (262)
  7 4guc_A Protein BA_2500; virule  46.5      40  0.0014   29.8   6.3   48  311-366    34-87  (120)
  8 3nol_A Glutamine cyclotransfer  46.0      59   0.002   32.5   8.4   73  500-589    54-127 (262)
  9 3c75_H MADH, methylamine dehyd  44.5      88   0.003   33.2  10.0  111  460-589   101-220 (426)
 10 3nok_A Glutaminyl cyclase; bet  44.4      87   0.003   31.4   9.4   96  461-589    78-175 (268)
 11 2iwa_A Glutamine cyclotransfer  42.8 1.7E+02  0.0057   29.0  11.2   98  460-588    46-145 (266)
 12 3c75_H MADH, methylamine dehyd  41.6      81  0.0028   33.5   9.2   79  499-588    85-168 (426)
 13 2mad_H Methylamine dehydrogena  41.4   3E+02    0.01   27.9  26.6   38  552-589   276-318 (373)
 14 1fwx_A Nitrous oxide reductase  40.4      43  0.0015   37.5   6.9   87  497-595   100-200 (595)
 15 1jof_A Carboxy-CIS,CIS-muconat  39.9 2.8E+02  0.0097   27.3  27.9   36  553-590   320-355 (365)
 16 2iwa_A Glutamine cyclotransfer  35.4   1E+02  0.0034   30.6   8.2   77  500-595    33-110 (266)
 17 3sjl_D Methylamine dehydrogena  35.0 2.6E+02   0.009   29.2  11.8  121  459-598    60-192 (386)
 18 1mda_H Methylamine dehydrogena  33.7 2.5E+02  0.0085   28.9  11.2   80  500-588    33-115 (368)
 19 2mad_H Methylamine dehydrogena  32.5 1.9E+02  0.0066   29.4  10.2   80  498-588    32-116 (373)
 20 2ece_A 462AA long hypothetical  30.8 1.6E+02  0.0054   31.9   9.3   93  496-595    93-193 (462)
 21 3nok_A Glutaminyl cyclase; bet  28.8 1.7E+02  0.0059   29.2   8.6   71  499-588    65-135 (268)
 22 3u4y_A Uncharacterized protein  27.1   4E+02   0.014   25.1  11.8  102  462-588    24-127 (331)
 23 3sjl_D Methylamine dehydrogena  26.8 5.5E+02   0.019   26.6  24.4  254  261-589    41-331 (386)
 24 3c5j_A HLA class II histocompa  22.1 3.3E+02   0.011   24.7   8.8  106   94-203    53-166 (181)
 25 3hfq_A Uncharacterized protein  20.4 5.6E+02   0.019   24.4  24.8   75  264-346    50-127 (347)

No 1  
>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays}
Probab=100.00  E-value=4.7e-143  Score=1193.42  Aligned_cols=519  Identities=68%  Similarity=1.142  Sum_probs=488.1

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHhhhc--ccCCCCCCCCCCccccccCCcCCCCCCCcccceEeeecCCCCceEEEeecCC
Q 007291           91 QQSQWNPLQRAAAMALDMAENALVSR--ERQHPLPKTADPRVQIGGNFAPVPERPVRHGLPVTGSIPECINGVYLRNGAN  168 (609)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~l~g~fapv~ee~~~~~L~V~G~IP~~L~G~~~RNGPn  168 (609)
                      ..++|||+|++|+++||++|++|+++  +.++|||+++||+++|+|||+||+||++..+|+|+|+||+||+|+|||||||
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~fapv~ee~~~~~l~V~G~IP~~L~Gt~~RNGpn   84 (529)
T 3npe_A            5 GKKQLNLFQRAAAAALDAFEEGFVANVLERPHGLPSTADPAVQIAGNFAPVGERPPVHELPVSGRIPPFIDGVYARNGAN   84 (529)
T ss_dssp             ---CCCSHHHHHHHHHHHHHHHTCCCCCCTTSCCCTTTCHHHHTSGGGSCCCCEEEEESCCEEECCCTTCEEEEEECCBC
T ss_pred             CcCCCChhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccchhccCcccccccCCcccceEeecCCccCCceEEEecCC
Confidence            44679999999999999999999997  6689999999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCCCcCccCCCceEEEEEcCCce-eeeeeeecchHHHHHHHcCCCcccccccccCCCCchhhhHHhhhhcccccc
Q 007291          169 PLFEPVAGHHFFDGDGMVHAVTIGNGSA-SYACRFTETQRLMQERELGRPVFPKAIGELHGHNGIGRLLLFYARGLFGLV  247 (609)
Q Consensus       169 p~f~p~~~~H~FDGDGMvha~~f~~G~a-~y~~RfV~T~~~~~E~~~Gr~~~~~~~g~~~g~~g~ar~~~~~~r~~~g~~  247 (609)
                      |+|++..++||||||||||+|+|+||+| +|+||||||++|++|+++||++||+++|+++++++++|..+++.|..+|++
T Consensus        85 P~f~~~~~~HwFDGdGmlh~~~f~~G~a~~y~nRfVrT~~~~~e~~agr~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  164 (529)
T 3npe_A           85 PCFDPVAGHHLFDGDGMVHALRIRNGAAESYACRFTETARLRQERAIGRPVFPKAIGELHGHSGIARLALFYARAACGLV  164 (529)
T ss_dssp             CSSCCSSCCCGGGSCBEEEEEEEETTEEEEEEEEECCCHHHHHHHHHTSCCSCCTTTTTTSSTHHHHHHHHHHHHHTTSC
T ss_pred             cCcCCcCCCccCCCCceEEEEEECCCccceEEEeEecCHHHHHHHHcCCcccccccccccccchhhhhhhhhhhcccccc
Confidence            9998888899999999999999999999 999999999999999999999999999999999999999888888888887


Q ss_pred             CCCCCCccceeeeeeeCCeEEEEEcCCccEEEecCCCCCcccceeecccCccccccccCCeecCCCCeeEEEEeeeccCC
Q 007291          248 DHKQGTGVANAGLVYFNNRILAMSEDDLPYQVRITPSGDLETVGRYNFNHQLKSTMIAHPKVDPVSKELFALSYDVVQKP  327 (609)
Q Consensus       248 ~~~~~~~~ANT~vv~~~grLlAl~E~g~Py~ldi~p~~tLeT~G~~df~g~L~~~~tAHPk~Dp~TGel~~f~y~~~~~p  327 (609)
                      +...++++|||||++|+||||||||+|+||+++|||++||||+|++||+|+|.++||||||+||+||||++|+|++.++|
T Consensus       165 ~~~~~~~~ANtnvv~~~g~llAl~E~g~Py~~~idp~~tLeT~G~~d~~g~l~~~~tAHPk~Dp~TGel~~f~y~~~~~p  244 (529)
T 3npe_A          165 DPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQLGCAMIAHPKLDPATGELHALSYDVIKRP  244 (529)
T ss_dssp             CGGGCCCCCCSCEEEETTEEEECCTTSCCEEEEECTTSCEEEEEECCGGGCCCSCCCSCCEECTTTCCEEEEECCSSSSC
T ss_pred             cccccCCCCeEEEEEECCEEEEEEcCCCceEEecCCCCCcceeeeeccCCccCCcccccCcCCCCCCcEEEEEeecCCCC
Confidence            76667899999999999999999999999999998866999999999999999999999999999999999999988789


Q ss_pred             cEEEEEEcCCCCCcceEEEeCCccccccccccCCCeEEEecCCccccHHHHhcCCCCeeecCCCCeEEEEEeCcCCCCCc
Q 007291          328 YLKYFRFSADGDKSPDVEIHLPVPTMMHDFAITENFVVIPDQQVVFKLQEMITGGSPVIYDKNKKSRFGILAKNAKDSND  407 (609)
Q Consensus       328 ~l~~~~~d~~G~~~~~~~i~~~~p~~~HDFaiTenYvV~~d~p~~~~~~~m~~g~~~~~~d~~~~tr~~VipR~~~~~~~  407 (609)
                      +++||++|++|++.+.++|+++.|+|||||||||||+||+++|+++++.+|++|++++.|++++++|||||||++++.+.
T Consensus       245 ~~~~~~~~~~G~~~~~~~i~~~~p~~~HDFaiTenyvVf~~~Pl~~~~~~~~~g~~~~~~~p~~~tr~~VipR~~~~~~~  324 (529)
T 3npe_A          245 YLKYFYFRPDGTKSDDVEIPLEQPTMIHDFAITENLVVVPDHQVVFKLQEMLRGGSPVVLDAAKTSRFGVLPKHAADASE  324 (529)
T ss_dssp             CCEEEEECTTCCBCCCEECCCSSCBCCCCCEECSSEEEEEECSEEECGGGGTTTCCSEEECTTSCCEEEEEETTCSSGGG
T ss_pred             cEEEEEECCCCCEEEEEEEeCCCCceEeeEEecCCeEEEEeCCeEEcHHHHhCCCCceEECCCCCcEEEEEECCCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999877678


Q ss_pred             eEEEecCceeEEeccccccCCCCCcEEEEEeecCCCcchhhhccccccCceEEEEEeCCCCCeeEEEeeccCCcccccCc
Q 007291          408 IIWIESPDTFCFHLWNAWEEPETDEIVVIGSCMTPADSIFNECDESLKSVLSEIRLNLKTGESTRRQILSESDQVNLEAG  487 (609)
Q Consensus       408 v~w~e~p~~f~fH~~NA~Ee~~~~~vVv~~~~~~~~d~~~~~~~~~l~~~l~r~ridl~tG~~~~~~l~~~~~~~~~EfP  487 (609)
                      |+||++|+||+||++|||||+++|+||+++||+.+.+.+++...+++++.|+|||||+++|+++++.+.++..+.++|||
T Consensus       325 vrw~e~~~~f~fH~~NA~Ee~~~~~ivv~~~~~~~~~~~~~~~~~~~~~~l~r~rl~l~~g~~~~~~l~~~~~~~~~EfP  404 (529)
T 3npe_A          325 MAWVDVPDCFCFHLWNAWEDEATGEVVVIGSCMTPADSIFNESDERLESVLTEIRLDARTGRSTRRAVLPPSQQVNLEVG  404 (529)
T ss_dssp             CEEEECTTCEEEEEEEEEEETTTTEEEEEEEEECCCCCSCCSSSSCCCCEEEEEEECTTTCCEEEEESSCSSSCCCEEEE
T ss_pred             eEEEEcCCEEEEEecccEecCCCCeEEEEEecccCchhhhhccchhhccceEEEEEcCCCCCEEeEEecccccCccccCc
Confidence            99999999999999999998655789999999988888887666778899999999999999999988754446889999


Q ss_pred             ccCCccCCCCCceEEEeeccCCCCcCcEEEEecCCCCeEEEEcCCCccCCccEeeecCCCC--CCCCCCcEEEEEEEeCC
Q 007291          488 MVNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGEVKKYFYGDNKYGGEPFFLPRDANN--SENEDDGYILAFVHDEK  565 (609)
Q Consensus       488 ~In~~~~Gr~~Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~~~~--~~~EDDGyLLs~V~d~~  565 (609)
                      +||++|.||+|||+|+++.++++++++|+|+|++||+++.|++|+|+|+|||+||||+++.  +++|||||||++|+|+.
T Consensus       405 ~In~~~~Gr~~Ry~Y~~~~~~~~~~~~l~K~D~~tg~~~~~~~g~~~~~~EPvFVPrp~~~~~~~~EDDG~lLs~V~d~~  484 (529)
T 3npe_A          405 MVNRNLLGRETRYAYLAVAEPWPKVSGFAKVDLSTGELTKFEYGEGRFGGEPCFVPMDPAAAHPRGEDDGYVLTFVHDER  484 (529)
T ss_dssp             EECGGGTTSCCSEEEEEECCSTTSCCEEEEEETTTCCEEEEECCTTBCCCCCEEEECCSCSSSSCCTTCEEEEEEEEBSS
T ss_pred             eEChhHcCCccceEEEeccCCCCCcceEEEEecCCCceEEEEcCCCccccCCEeeeCCCCCCCCCCCCCcEEEEEEEECC
Confidence            9999999999999999998888889999999999999999999999999999999998510  36899999999999999


Q ss_pred             CCceEEEEEeCCCCCeeEEEEcCCcCCCCcccccccCcchhccC
Q 007291          566 TWKSELQIVNAMNLQLEASIKLPSRVPYGFHGTFVDSKDLVNQA  609 (609)
Q Consensus       566 ~~~SeL~VlDA~~l~~VArv~LP~rVP~GFHG~fv~~~~l~~q~  609 (609)
                      +++|+|+||||++|++||||+||+||||||||+|++++||++|+
T Consensus       485 ~~~S~LlILDA~~l~~vArv~LP~rvP~GfHG~wv~~~~l~~q~  528 (529)
T 3npe_A          485 AGTSELLVVNAADMRLEATVQLPSRVPFGFHGTFITGQELEAQA  528 (529)
T ss_dssp             CCCEEEEEEETTTTEEEEEEEESSCCCCCSCEEEEEHHHHTTCC
T ss_pred             CCcEEEEEEeCCCCccceEEECCCCCCCCccccccCHHHhhhhh
Confidence            99999999999999999999999999999999999999999995


No 2  
>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A*
Probab=100.00  E-value=1.9e-117  Score=981.35  Aligned_cols=444  Identities=25%  Similarity=0.448  Sum_probs=396.4

Q ss_pred             cccCCcCCCCCCCcccce-EeeecCCCCceEEEeecCCCCcCC-CCCCcCccCCCceEEEEE-cCCceeeeeeeecchHH
Q 007291          132 IGGNFAPVPERPVRHGLP-VTGSIPECINGVYLRNGANPLFEP-VAGHHFFDGDGMVHAVTI-GNGSASYACRFTETQRL  208 (609)
Q Consensus       132 l~g~fapv~ee~~~~~L~-V~G~IP~~L~G~~~RNGPnp~f~p-~~~~H~FDGDGMvha~~f-~~G~a~y~~RfV~T~~~  208 (609)
                      ++++|+|+.+|.+.. |. |+|+||+||+|+|||||||+++.+ ...+||||||||||+|+| ++|+|+|+||||||++|
T Consensus        20 ~~~~f~~~~~E~~~~-l~~V~G~IP~~L~Gt~~RnGP~~~~~~~~~~~H~FDGdGmlh~~~f~~~G~v~y~~R~v~T~~~   98 (490)
T 2biw_A           20 WLRGYQSQPQEWDYW-VEDVEGSIPPDLQGTLYRNGPGLLEIGDRPLKHPFDGDGMVTAFKFPGDGRVHFQSKFVRTQGY   98 (490)
T ss_dssp             HHHTTSCCCSCEEEE-CCCEEECCCTTCCEEEEECCBCCSEETTEECSSGGGSCBEEEEEEECSSSCCEEEEEECCCHHH
T ss_pred             hhhhccCccccCCcc-cceEEeCCCCCCCeEEEEeCCCcCcCCCCcccCccCCCCeEEEEEECCCCEEEEEcceEeCHHH
Confidence            578899998777654 76 999999999999999999988654 467899999999999999 99999999999999999


Q ss_pred             HHHHHcCCCcccccccccCCCCchhhhHHhhhhccccccCCCCCCccceeeeeeeCCeEEEEEcCCccEEEecCCCCCcc
Q 007291          209 MQERELGRPVFPKAIGELHGHNGIGRLLLFYARGLFGLVDHKQGTGVANAGLVYFNNRILAMSEDDLPYQVRITPSGDLE  288 (609)
Q Consensus       209 ~~E~~~Gr~~~~~~~g~~~g~~g~ar~~~~~~r~~~g~~~~~~~~~~ANT~vv~~~grLlAl~E~g~Py~ldi~p~~tLe  288 (609)
                      ++|+++||++|++.+|+..+...+.+        .++.    ..+|+|||+|++|+||||||||+|.||+||  | .|||
T Consensus        99 ~~e~~ag~~~~~~~fg~~~~~~~~~~--------~~~~----~~~~~aNT~v~~~~g~llAl~E~~~p~~ld--p-~tLe  163 (490)
T 2biw_A           99 VEEQKAGKMIYRGVFGSQPAGGWLKT--------IFDL----RLKNIANTNITYWGDRLLALWEGGQPHRLE--P-SNLA  163 (490)
T ss_dssp             HHHHHHTSCCSBCTTSCCCSSTHHHH--------TTCC----CBCCCCCSEEEEETTEEEEECTTSCCEEEC--T-TTCC
T ss_pred             HHHHHhCCcccccccccCCCCchhhh--------hccc----ccCCCCEEEEEEECCEEEEEEcCCCCEecc--c-cccc
Confidence            99999999999988888765322111        1111    147899999999999999999999999998  8 8999


Q ss_pred             cceeecccCcc-cc-ccccCCeecCC------CCeeEEEEeeeccCCcEEEEEEcCCCCCcceEEEeCCccccccccccC
Q 007291          289 TVGRYNFNHQL-KS-TMIAHPKVDPV------SKELFALSYDVVQKPYLKYFRFSADGDKSPDVEIHLPVPTMMHDFAIT  360 (609)
Q Consensus       289 T~G~~df~g~L-~~-~~tAHPk~Dp~------TGel~~f~y~~~~~p~l~~~~~d~~G~~~~~~~i~~~~p~~~HDFaiT  360 (609)
                      |+|++||+|+| ++ .||||||+||+      ||||++|+|+..+.+.++||++|++|++.+.+.|+++.++||||||||
T Consensus       164 T~G~~d~~g~l~~~~~~tAHPk~Dp~~~~~~gtgel~~fg~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~HDfaiT  243 (490)
T 2biw_A          164 TIGLDDLGGILAEGQPLSAHPRIDPASTFDGGQPCYVTFSIKSSLSSTLTLLELDPQGKLLRQKTETFPGFAFIHDFAIT  243 (490)
T ss_dssp             EEEECCTTTTSCTTCCCCSCCEEESSCTTTTTCCEEEEEEEEESSEEEEEEEEECTTSCEEEEEEEEEESCCCCCCCEEC
T ss_pred             EeeeeccCCcccCCcccccCceECccccccCCCCeEEEEEecCCCCcEEEEEEECCCCCEEeeEEEeCCCCceEeeeecc
Confidence            99999999999 64 89999999999      999999999986555599999999999999999999999999999999


Q ss_pred             CCeEEEecCCccccHHHHhcCC----CCeeecCCCCeEEEEEeCcCCCCCceEEEecCceeEEeccccccCCCCCcEEEE
Q 007291          361 ENFVVIPDQQVVFKLQEMITGG----SPVIYDKNKKSRFGILAKNAKDSNDIIWIESPDTFCFHLWNAWEEPETDEIVVI  436 (609)
Q Consensus       361 enYvV~~d~p~~~~~~~m~~g~----~~~~~d~~~~tr~~VipR~~~~~~~v~w~e~p~~f~fH~~NA~Ee~~~~~vVv~  436 (609)
                      |||+||+++|+.+++.+|+.|+    .++.|++++++|||||||+   .+.++||++|+||+||++|||||+  |+||++
T Consensus       244 eny~V~~~~P~~~~~~~~~~g~~~~~~~~~~~p~~~tr~~VipR~---~~~v~~f~~~~~f~fH~~NA~Ee~--~~Iv~d  318 (490)
T 2biw_A          244 PHYAIFLQNNVTLNGLPYLFGLRGAGECVQFHPDKPAQIILVPRD---GGEIKRIPVQAGFVFHHANAFEEN--GKIILD  318 (490)
T ss_dssp             SSEEEEEECCEEECCHHHHTTSSCGGGGEEECTTSCEEEEEEETT---SCCCEEEEECCCEEEEEEEEEEET--TEEEEE
T ss_pred             CCEEEEEeCCeEEcHHHHhhccCCccceeEeCCCCCcEEEEEECC---CCccEEEecCCCeEEecccceecC--CeEEEE
Confidence            9999999999999999998754    5799999999999999998   356999999999999999999985  689999


Q ss_pred             EeecCCCcch-----hhh--ccccccCceEEEEEeCCCCCeeEEEeeccCCcccccCcccCCccCCCCCceEEEeecc--
Q 007291          437 GSCMTPADSI-----FNE--CDESLKSVLSEIRLNLKTGESTRRQILSESDQVNLEAGMVNRNSLGRKTQFAYLAIAE--  507 (609)
Q Consensus       437 ~~~~~~~d~~-----~~~--~~~~l~~~l~r~ridl~tG~~~~~~l~~~~~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~--  507 (609)
                      .||+.+.+.+     +..  ......++|+||||||++|+++++.|.    +.++|||+||++|.||+|||+|+++.+  
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~R~~i~l~~g~v~~~~l~----~~~~EfP~In~~~~G~~~Ry~Y~~~~~~~  394 (490)
T 2biw_A          319 SICYNSLPQVDTDGDFRSTNFDNLDPGQLWRFTIDPAAATVEKQLMV----SRCCEFPVVHPQQVGRPYRYVYMGAAHHS  394 (490)
T ss_dssp             EEEESCCCCCCTTCCGGGCCGGGSCCCEEEEEEEETTTTEEEEEEEE----CSCEEEEECCGGGTTSCCSEEEEEECSSS
T ss_pred             EeccCCcccccccccccccccccCCCceEEEEEEECCCCceEEEecc----CCcccccccChhhCCceeeeEEEEeecCC
Confidence            9988765431     111  112345789999999999999998887    588999999999999999999999875  


Q ss_pred             -CCCCcCcEEEEecCCCCeEEEEcCCCccCCccEeeecCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCC--eeEE
Q 007291          508 -PWPKVSGFAKVDLSSGEVKKYFYGDNKYGGEPFFLPRDANNSENEDDGYILAFVHDEKTWKSELQIVNAMNLQ--LEAS  584 (609)
Q Consensus       508 -p~~~~~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~~~~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~~l~--~VAr  584 (609)
                       +++++++|+|+|++||+.+.|.+|+|+|+|||+||||++  +++|||||||++|+|+++++|+|+||||++|+  ||||
T Consensus       395 ~~~~~~~~l~K~D~~tg~~~~~~~g~g~~~~EPvFVPrp~--~~~EDDG~ll~~V~d~~~~~S~l~IlDA~~~~~~pvAr  472 (490)
T 2biw_A          395 TGNAPLQAILKVDLESGTETLRSFAPHGFAGEPIFVPRPG--GVAEDDGWLLCLIYKADLHRSELVILDAQDITAPAIAT  472 (490)
T ss_dssp             SSCCCCCEEEEEETTTTEEEEEECTTTEECCCCEEEECTT--CCSTTCEEEEEEEEETTTTEEEEEEEETTCTTSCCSEE
T ss_pred             CCCCCCCeEEEEECCCCCEEEEECCCCccccCCEEecCCC--CCCCCCcEEEEEEEeCCCCceeEEEEccCCCCcCceEE
Confidence             456789999999999999999999999999999999995  68999999999999999999999999999998  9999


Q ss_pred             EEcCCcCCCCcccccccC
Q 007291          585 IKLPSRVPYGFHGTFVDS  602 (609)
Q Consensus       585 v~LP~rVP~GFHG~fv~~  602 (609)
                      |+||+||||||||+|+++
T Consensus       473 v~lP~rvP~GfHG~wv~~  490 (490)
T 2biw_A          473 LKLKHHIPYPLHGSWAQT  490 (490)
T ss_dssp             EECSSCCCCCCCEEEEEC
T ss_pred             EeCCCcCCCCccccccCC
Confidence            999999999999999863


No 3  
>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A 4f2z_A 4f30_A 4f3a_A 4f3d_A
Probab=100.00  E-value=1.6e-111  Score=942.50  Aligned_cols=451  Identities=20%  Similarity=0.257  Sum_probs=366.9

Q ss_pred             ccccCCcCCCCCCCcccceEeeecCCCCceEEEeecCCCCc-CCCCCCcCccCCCceEEEEEcCCceeeeeeeecchHHH
Q 007291          131 QIGGNFAPVPERPVRHGLPVTGSIPECINGVYLRNGANPLF-EPVAGHHFFDGDGMVHAVTIGNGSASYACRFTETQRLM  209 (609)
Q Consensus       131 ~l~g~fapv~ee~~~~~L~V~G~IP~~L~G~~~RNGPnp~f-~p~~~~H~FDGDGMvha~~f~~G~a~y~~RfV~T~~~~  209 (609)
                      -++++|+|++|+++...|+|+|+||+||+|+|||||||++. .+..++||||||||||+|+|++|+|+|+||||||++|+
T Consensus        11 ~~~~~f~~~~E~~~p~~l~V~G~IP~~L~Gtl~RNGPg~~~~g~~~~~HwFDGdGmlh~~~~~~G~v~y~~R~v~T~~~~   90 (533)
T 3kvc_A           11 GYKKLFETVEELSSPLTAHVTGRIPLWLTGSLLRCGPGLFEVGSEPFYHLFDGQALLHKFDFKEGHVTYHRRFIRTDAYV   90 (533)
T ss_dssp             GGGGGGSCCCCCSSCEECEEEECCCTTCCEEEEEEEECCCEETTEECCBTTTSCEEEEEEEEETTEEEEEEEECCCHHHH
T ss_pred             hhhhhcCcccccCCceeeeEEeeCCCCCceEEEEeCCCccccCCcccccccCCCCEEEEEEEeCCEEEEEEEEecCHHHH
Confidence            47899999999999889999999999999999999999873 34467999999999999999999999999999999999


Q ss_pred             HHHHcCCCcccccccccCCC---CchhhhHHhhhhccccccCCCCCCccceeeeeeeCCeEEEEEcCCccEEEecCCCCC
Q 007291          210 QERELGRPVFPKAIGELHGH---NGIGRLLLFYARGLFGLVDHKQGTGVANAGLVYFNNRILAMSEDDLPYQVRITPSGD  286 (609)
Q Consensus       210 ~E~~~Gr~~~~~~~g~~~g~---~g~ar~~~~~~r~~~g~~~~~~~~~~ANT~vv~~~grLlAl~E~g~Py~ldi~p~~t  286 (609)
                      +|+++||++|++ +|+....   .++.+      |.+ ..+.....+++|||+|++|+||||||||++.||+||  | .|
T Consensus        91 ~e~~agr~~~~~-fg~~~~~~p~~~~~~------~~~-~~~~~~~~~~~ANt~v~~~~g~LlAl~E~~~p~~iD--p-~t  159 (533)
T 3kvc_A           91 RAMTEKRIVITE-FGTCAFPDPCKNIFS------RFF-SYFRGVEVTDNALVNIYPVGEDYYACTETNFITKVN--P-ET  159 (533)
T ss_dssp             HHHHHTSCCSCB-TTBCC--------------------------CCCCCCCSEEEEETTEEEEECSSSEEEEEC--T-TT
T ss_pred             HHHHcCCcceec-cCcccCCcchhhHHH------HHH-HhhccCCCCCCCEEEEEEECCEEEEEEcCCcCEEeC--h-HH
Confidence            999999999965 6664311   11111      111 111111347899999999999999999999999988  8 79


Q ss_pred             cccceeecccCcccc-ccccCCeecCCCCeeEEEEeeeccC--CcEEEEEEcCCCC-----Ccc---eEEEe---CCccc
Q 007291          287 LETVGRYNFNHQLKS-TMIAHPKVDPVSKELFALSYDVVQK--PYLKYFRFSADGD-----KSP---DVEIH---LPVPT  352 (609)
Q Consensus       287 LeT~G~~df~g~L~~-~~tAHPk~Dp~TGel~~f~y~~~~~--p~l~~~~~d~~G~-----~~~---~~~i~---~~~p~  352 (609)
                      |||+|++||+|+|+. .||||||+|| |||||+|+|+..++  +.+.+|++++++.     ..+   .++|+   ++.|+
T Consensus       160 LeT~G~~d~~g~l~~~~~tAHPk~Dp-tGel~~fg~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~p~  238 (533)
T 3kvc_A          160 LETIKQVDLCNYVSVNGATAHPHIEN-DGTVYNIGNCFGKNFSIAYNIVKIPPLQADKEDPISKSEIVVQFPCSDRFKPS  238 (533)
T ss_dssp             CCEEEEEEHHHHSSCSCCCSCCEECT-TSCEEEEEEECC---CCEEEEEEECCCCTTCCCGGGGCEEEEEEECSSTTCCB
T ss_pred             cccccccccCCccCCCccCCCCccCC-CCCEEEEeeccCCCCCcEEEEEEECccccccccccccceeEEeeccccCCCCc
Confidence            999999999999974 7999999999 99999999998754  6788888886531     222   23454   46899


Q ss_pred             cccccccCCCeEEEecCCccccHHHHhcC----CC----CeeecCCCCeEEEEEeCcCCCCCceEEEecCceeEEecccc
Q 007291          353 MMHDFAITENFVVIPDQQVVFKLQEMITG----GS----PVIYDKNKKSRFGILAKNAKDSNDIIWIESPDTFCFHLWNA  424 (609)
Q Consensus       353 ~~HDFaiTenYvV~~d~p~~~~~~~m~~g----~~----~~~~d~~~~tr~~VipR~~~~~~~v~w~e~p~~f~fH~~NA  424 (609)
                      |||||||||||+||+++|+++|+.+|+.|    +.    ++.||+++++|||||||++++ ..++||++++||+||++||
T Consensus       239 ~iHDFaiTeny~Vf~~~P~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~tr~~VipR~~~~-~~~~~~~~~~~f~fH~~NA  317 (533)
T 3kvc_A          239 YVHSFGLTPNYIVFVETPVKINLFKFLSSWSLWGANYMDCFESNETMGVWLHIADKKRKK-YINNKYRTSPFNLFHHINT  317 (533)
T ss_dssp             CCCCCEECSSEEEEEECSEEEC-----------CCCSGGGEEECSSCCEEEEEEETTTTE-EEEEEEEECCEEEEEEEEE
T ss_pred             eeeeeeecCCEEEEEeCCeEEcHHHHhhcccccCCChHHheeecCCCCcEEEEEECCCCC-cccEEEEeCCeeEEeeeee
Confidence            99999999999999999999999999876    43    689999999999999999754 2357899999999999999


Q ss_pred             ccCCCCCcEEEEEeecCCCcchhhhc-c---------------ccccCceEEEEEeCCCCC-------------------
Q 007291          425 WEEPETDEIVVIGSCMTPADSIFNEC-D---------------ESLKSVLSEIRLNLKTGE-------------------  469 (609)
Q Consensus       425 ~Ee~~~~~vVv~~~~~~~~d~~~~~~-~---------------~~l~~~l~r~ridl~tG~-------------------  469 (609)
                      |||+  |+||++.|++.+...+++.+ .               ....++|+||||||++++                   
T Consensus       318 ~Ee~--~~Iv~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~R~~l~l~~~~~~~~~nl~~~~~~~~~a~~  395 (533)
T 3kvc_A          318 YEDH--EFLIVDLCCWKGFEFVYNYLYLANLRENWEEVKKNARKAPQPEVRRYVLPLNIDKADTGKNLVTLPNTTATAIL  395 (533)
T ss_dssp             EEET--TEEEEEEEEEESSSCGGGGCBHHHHTSCHHHHHHHHTTSCEEEEEEEEEESCCCGGGTTSBCCCCTTCCCEEEE
T ss_pred             EEeC--CEEEEEEeeeCCchhhhhhhhhhhhcccchhccccccccCCceEEEEEEeCCcccccccccccccccccceeee
Confidence            9985  68998888876523443321 0               123467999999998751                   


Q ss_pred             -------eeEEEeeccCCcc-cccCcccCC-ccCCCCCceEEEeeccCCCCcCcEEEEecCCCCeEEEEcCCCccCCccE
Q 007291          470 -------STRRQILSESDQV-NLEAGMVNR-NSLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGEVKKYFYGDNKYGGEPF  540 (609)
Q Consensus       470 -------~~~~~l~~~~~~~-~~EfP~In~-~~~Gr~~Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~~~~g~g~~~gEPv  540 (609)
                             ++++.|.+  .+. ++|||+||+ +|.||+|||+|+++.+ .+++++|+|+|++||+.+.| +++|+|+|||+
T Consensus       396 ~~~~~~~~~~~~l~~--~~~~~~EfP~In~~~~~Gr~~Ry~Y~~~~~-~~~~~~l~K~D~~tg~~~~w-~~~~~~~~EPi  471 (533)
T 3kvc_A          396 CSDETIWLEPEVLFS--GPRQAFEFPQINYQKYGGKPYTYAYGLGLN-HFVPDRLCKLNVKTKETWVW-QEPDSYPSEPI  471 (533)
T ss_dssp             CTTSEEEEECEEEEC--BTTEEEEEEECCHHHHTTSCCCEEEEEEEE-TTEEEEEEEEETTTCCEEEE-CCTTCBCCCCE
T ss_pred             ccCCceeeeeeeecc--CCcccccCceECHHHhCCCcccEEEEeccC-CCCCceeEEEEcCCCCEEEE-eCCCccccCce
Confidence                   23444441  125 899999999 7999999999998876 36789999999999999888 68999999999


Q ss_pred             eeecCCCCCCCCCCcEEEEEEEeCCC--CceEEEEEeCCCCCeeEEEEcCCcCCCCcccccccC
Q 007291          541 FLPRDANNSENEDDGYILAFVHDEKT--WKSELQIVNAMNLQLEASIKLPSRVPYGFHGTFVDS  602 (609)
Q Consensus       541 FVPr~~~~~~~EDDGyLLs~V~d~~~--~~SeL~VlDA~~l~~VArv~LP~rVP~GFHG~fv~~  602 (609)
                      ||||++  +++|||||||++|+|+.+  .+|+|+||||++|++||||+||+||||||||+|+++
T Consensus       472 FVPrp~--~~~EDDG~lLs~V~d~~~~~~~s~LlILDA~~l~~vArv~lP~rvP~GfHG~w~~~  533 (533)
T 3kvc_A          472 FVSHPD--ALEEDDGVVLSVVVSPGAGQKPAYLLILNAKDLSEVARAEVEINIPVTFHGLFKKS  533 (533)
T ss_dssp             EEECTT--CCSTTCEEEEEEEECCSTTSCSEEEEEEETTTCCEEEEEEESSCCCCCCEEEEEEC
T ss_pred             eecCCC--CCCCCCcEEEEEEEeCCcCCCccEEEEEeCCCChhhEEEEeCCCCCCCccccccCC
Confidence            999995  689999999999999986  567999999999999999999999999999999874


No 4  
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=62.29  E-value=84  Score=34.55  Aligned_cols=105  Identities=11%  Similarity=0.019  Sum_probs=60.5

Q ss_pred             EEEEeCCCCCeeEEEeeccCCcccccCcccCCccCCCCCceEEEeeccCCCCcCcEEEEecC--CCCeEEEEcCCCccCC
Q 007291          460 EIRLNLKTGESTRRQILSESDQVNLEAGMVNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLS--SGEVKKYFYGDNKYGG  537 (609)
Q Consensus       460 r~ridl~tG~~~~~~l~~~~~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~p~~~~~givK~Dl~--tg~~~~~~~g~g~~~g  537 (609)
                      -+.||+.|+++..+--.    ........++     ...||+|.+..+     +.|..+|+.  ++++..- ...   +.
T Consensus       179 V~viD~~t~~v~~~i~~----g~~p~~v~~S-----pDGr~lyv~~~d-----g~V~viD~~~~t~~~v~~-i~~---G~  240 (567)
T 1qks_A          179 IALIDGSTYEIKTVLDT----GYAVHISRLS-----ASGRYLFVIGRD-----GKVNMIDLWMKEPTTVAE-IKI---GS  240 (567)
T ss_dssp             EEEEETTTCCEEEEEEC----SSCEEEEEEC-----TTSCEEEEEETT-----SEEEEEETTSSSCCEEEE-EEC---CS
T ss_pred             EEEEECCCCeEEEEEeC----CCCccceEEC-----CCCCEEEEEcCC-----CeEEEEECCCCCCcEeEE-Eec---CC
Confidence            45578888876543221    1111122233     356799976532     479999996  7664332 222   34


Q ss_pred             ccEeeecCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCCeeEEEEcC
Q 007291          538 EPFFLPRDANNSENEDDGYILAFVHDEKTWKSELQIVNAMNLQLEASIKLP  588 (609)
Q Consensus       538 EPvFVPr~~~~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~~l~~VArv~LP  588 (609)
                      +|.-+.=.+  -..-|..||++.-++    ...+.|+|+.+++++.++.+.
T Consensus       241 ~P~~ia~s~--~~~pDGk~l~v~n~~----~~~v~ViD~~t~~~~~~i~~~  285 (567)
T 1qks_A          241 EARSIETSK--MEGWEDKYAIAGAYW----PPQYVIMDGETLEPKKIQSTR  285 (567)
T ss_dssp             EEEEEEECC--STTCTTTEEEEEEEE----TTEEEEEETTTCCEEEEEECC
T ss_pred             CCceeEEcc--ccCCCCCEEEEEEcc----CCeEEEEECCCCcEEEEEecc
Confidence            565444320  000145588766554    346889999999999998875


No 5  
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=54.53  E-value=35  Score=33.70  Aligned_cols=27  Identities=30%  Similarity=0.407  Sum_probs=18.2

Q ss_pred             ceEEEeeccCCCCcCcEEEEecCCCCeEE
Q 007291          499 QFAYLAIAEPWPKVSGFAKVDLSSGEVKK  527 (609)
Q Consensus       499 Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~  527 (609)
                      ...|...+.-  .-+.|.++|++||++..
T Consensus        31 ~~LyestG~~--g~S~v~~vD~~tgkv~~   57 (243)
T 3mbr_X           31 GHLYESTGET--GRSSVRKVDLETGRILQ   57 (243)
T ss_dssp             TEEEEEECCT--TSCEEEEEETTTCCEEE
T ss_pred             CEEEEECCCC--CCceEEEEECCCCCEEE
Confidence            3567655432  23689999999998654


No 6  
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=48.50  E-value=83  Score=31.40  Aligned_cols=96  Identities=13%  Similarity=0.161  Sum_probs=57.1

Q ss_pred             EEEeCCCCCeeEEEeeccCCcccccCcc-cCCccCCCCCceEEEeeccCCCCcCcEEEEecCCCCeE-EEEcCCCccCCc
Q 007291          461 IRLNLKTGESTRRQILSESDQVNLEAGM-VNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGEVK-KYFYGDNKYGGE  538 (609)
Q Consensus       461 ~ridl~tG~~~~~~l~~~~~~~~~EfP~-In~~~~Gr~~Ry~Y~~~~~p~~~~~givK~Dl~tg~~~-~~~~g~g~~~gE  538 (609)
                      .++|++||++.++.-..   .  --|+. |..     ..+..|.+....    +-+..+|..|.+.. .+.++     +|
T Consensus        68 ~~vD~~Tgkv~~~~~l~---~--~~FgeGit~-----~g~~ly~ltw~~----~~v~v~D~~t~~~~~ti~~~-----~e  128 (262)
T 3nol_A           68 RKVDIESGKTLQQIELG---K--RYFGEGISD-----WKDKIVGLTWKN----GLGFVWNIRNLRQVRSFNYD-----GE  128 (262)
T ss_dssp             EEECTTTCCEEEEEECC---T--TCCEEEEEE-----ETTEEEEEESSS----SEEEEEETTTCCEEEEEECS-----SC
T ss_pred             EEEECCCCcEEEEEecC---C--ccceeEEEE-----eCCEEEEEEeeC----CEEEEEECccCcEEEEEECC-----CC
Confidence            35899999987654331   0  01110 110     123678776432    67899999998854 44332     23


Q ss_pred             cEeeecCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCCeeEEEEcC
Q 007291          539 PFFLPRDANNSENEDDGYILAFVHDEKTWKSELQIVNAMNLQLEASIKLP  588 (609)
Q Consensus       539 PvFVPr~~~~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~~l~~VArv~LP  588 (609)
                      +.        +-..|.+.|+  +-|   +.+.|.++|+.+++.++++.+.
T Consensus       129 G~--------glt~dg~~L~--~Sd---Gs~~i~~iDp~T~~v~~~I~V~  165 (262)
T 3nol_A          129 GW--------GLTHNDQYLI--MSD---GTPVLRFLDPESLTPVRTITVT  165 (262)
T ss_dssp             CC--------CEEECSSCEE--ECC---SSSEEEEECTTTCSEEEEEECE
T ss_pred             ce--------EEecCCCEEE--EEC---CCCeEEEEcCCCCeEEEEEEec
Confidence            22        1122334433  334   3568999999999999999885


No 7  
>4guc_A Protein BA_2500; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: PGE; 1.40A {Bacillus anthracis}
Probab=46.51  E-value=40  Score=29.79  Aligned_cols=48  Identities=15%  Similarity=0.132  Sum_probs=35.2

Q ss_pred             CCCCeeEEEEeeeccC--CcEEEEEEc----CCCCCcceEEEeCCccccccccccCCCeEEE
Q 007291          311 PVSKELFALSYDVVQK--PYLKYFRFS----ADGDKSPDVEIHLPVPTMMHDFAITENFVVI  366 (609)
Q Consensus       311 p~TGel~~f~y~~~~~--p~l~~~~~d----~~G~~~~~~~i~~~~p~~~HDFaiTenYvV~  366 (609)
                      -.||..|.+....+.+  .-+++|+++    ++|.++|-..|        ||+..+++|.+|
T Consensus        34 lktGdtf~it~~~~~~d~g~~KIyrv~~~~~~~g~L~RYkTI--------~d~~~~~~~~~f   87 (120)
T 4guc_A           34 LKHGDTFDVTIYTGGKDTGIVKIYQLSGNENDEINLHRYKTI--------YDSGLKHNYGRF   87 (120)
T ss_dssp             EETTCEEEEEEECCSSBCCEEEEEEECSCTTCSCCEEEEEEE--------ECCCCCTTEEEE
T ss_pred             cccCCEEEEEEEcCCCccceEEEEEEccCCCCCcceEEEEEe--------ccCCCcCCeeEE
Confidence            3488888877765432  248999997    46777776544        888999998887


No 8  
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=45.99  E-value=59  Score=32.49  Aligned_cols=73  Identities=22%  Similarity=0.121  Sum_probs=44.9

Q ss_pred             eEEEeeccCCCCcCcEEEEecCCCCeEE-EEcCCCccCCccEeeecCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCC
Q 007291          500 FAYLAIAEPWPKVSGFAKVDLSSGEVKK-YFYGDNKYGGEPFFLPRDANNSENEDDGYILAFVHDEKTWKSELQIVNAMN  578 (609)
Q Consensus       500 y~Y~~~~~p~~~~~givK~Dl~tg~~~~-~~~g~g~~~gEPvFVPr~~~~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~~  578 (609)
                      ..|.+.+.-  .-+.|.++|++||++.. ...++ .+.+|-+-+ .  +     +--|+    .+.  ....+.|+|+++
T Consensus        54 ~LyestG~~--g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~-~--g-----~~ly~----ltw--~~~~v~v~D~~t  116 (262)
T 3nol_A           54 YFYESTGLN--GRSSIRKVDIESGKTLQQIELGK-RYFGEGISD-W--K-----DKIVG----LTW--KNGLGFVWNIRN  116 (262)
T ss_dssp             EEEEEEEET--TEEEEEEECTTTCCEEEEEECCT-TCCEEEEEE-E--T-----TEEEE----EES--SSSEEEEEETTT
T ss_pred             EEEEECCCC--CCceEEEEECCCCcEEEEEecCC-ccceeEEEE-e--C-----CEEEE----EEe--eCCEEEEEECcc
Confidence            567665432  13589999999999654 33333 233343322 1  1     22222    232  345799999999


Q ss_pred             CCeeEEEEcCC
Q 007291          579 LQLEASIKLPS  589 (609)
Q Consensus       579 l~~VArv~LP~  589 (609)
                      ++.++++..+.
T Consensus       117 ~~~~~ti~~~~  127 (262)
T 3nol_A          117 LRQVRSFNYDG  127 (262)
T ss_dssp             CCEEEEEECSS
T ss_pred             CcEEEEEECCC
Confidence            99999999873


No 9  
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=44.52  E-value=88  Score=33.24  Aligned_cols=111  Identities=9%  Similarity=-0.019  Sum_probs=64.5

Q ss_pred             EEEEeCCCCCeeEEEeeccCCcccccCcccCCccCCCCCceEEEeeccCC-----CCcCcEEEEecCCCCeEEE-EcC-C
Q 007291          460 EIRLNLKTGESTRRQILSESDQVNLEAGMVNRNSLGRKTQFAYLAIAEPW-----PKVSGFAKVDLSSGEVKKY-FYG-D  532 (609)
Q Consensus       460 r~ridl~tG~~~~~~l~~~~~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~p~-----~~~~givK~Dl~tg~~~~~-~~g-~  532 (609)
                      -..||+.|+++..+--.       ...|  +- ......|+.|.+.....     ..-+.|..+|+.++++... ..+ +
T Consensus       101 VsVID~~t~~vv~~I~v-------G~~P--gi-a~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~  170 (426)
T 3c75_H          101 QFVIDGSTGRILGMTDG-------GFLP--HP-VAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDA  170 (426)
T ss_dssp             EEEEETTTTEEEEEEEE-------CSSC--EE-EECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC
T ss_pred             EEEEECCCCEEEEEEEC-------CCCC--ce-EECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCc
Confidence            46688999887643322       1123  11 12345678888753210     0135799999999986543 333 3


Q ss_pred             Ccc--CCccEeeecCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCCeeEEEEcCC
Q 007291          533 NKY--GGEPFFLPRDANNSENEDDGYILAFVHDEKTWKSELQIVNAMNLQLEASIKLPS  589 (609)
Q Consensus       533 g~~--~gEPvFVPr~~~~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~~l~~VArv~LP~  589 (609)
                      +++  +..|--+-      -..|..||.+.  +. .....+.|+|.++.+.++++.+|.
T Consensus       171 ~r~~~g~~P~~~~------~spDGk~lyV~--n~-~~~~~VsVID~~t~kvv~~I~v~g  220 (426)
T 3c75_H          171 PRFLVGTYQWMNA------LTPDNKNLLFY--QF-SPAPAVGVVDLEGKTFDRMLDVPD  220 (426)
T ss_dssp             CCCCBSCCGGGSE------ECTTSSEEEEE--EC-SSSCEEEEEETTTTEEEEEEECCS
T ss_pred             cccccCCCcceEE------EcCCCCEEEEE--ec-CCCCeEEEEECCCCeEEEEEEcCC
Confidence            333  22232221      12355576654  32 124679999999999999999874


No 10 
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=44.43  E-value=87  Score=31.39  Aligned_cols=96  Identities=10%  Similarity=0.010  Sum_probs=58.0

Q ss_pred             EEEeCCCCCeeEEEeeccCCcccccCcc-cCCccCCCCCceEEEeeccCCCCcCcEEEEecCCCCeE-EEEcCCCccCCc
Q 007291          461 IRLNLKTGESTRRQILSESDQVNLEAGM-VNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGEVK-KYFYGDNKYGGE  538 (609)
Q Consensus       461 ~ridl~tG~~~~~~l~~~~~~~~~EfP~-In~~~~Gr~~Ry~Y~~~~~p~~~~~givK~Dl~tg~~~-~~~~g~g~~~gE  538 (609)
                      .++|++||++.++. ..+     --|+. |..  .   .+..|.+....    +-+..+|.+|++.. .+.++     +|
T Consensus        78 ~~iD~~Tgkv~~~~-l~~-----~~FgeGit~--~---g~~Ly~ltw~~----~~v~V~D~~Tl~~~~ti~~~-----~e  137 (268)
T 3nok_A           78 RQLSLESAQPVWME-RLG-----NIFAEGLAS--D---GERLYQLTWTE----GLLFTWSGMPPQRERTTRYS-----GE  137 (268)
T ss_dssp             EECCSSCSSCSEEE-ECT-----TCCEEEEEE--C---SSCEEEEESSS----CEEEEEETTTTEEEEEEECS-----SC
T ss_pred             EEEECCCCcEEeEE-CCC-----CcceeEEEE--e---CCEEEEEEccC----CEEEEEECCcCcEEEEEeCC-----Cc
Confidence            35799999988766 421     11220 110  1   23577775432    67899999998854 34332     23


Q ss_pred             cEeeecCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCCeeEEEEcCC
Q 007291          539 PFFLPRDANNSENEDDGYILAFVHDEKTWKSELQIVNAMNLQLEASIKLPS  589 (609)
Q Consensus       539 PvFVPr~~~~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~~l~~VArv~LP~  589 (609)
                      +.        +-..|.+.|+.  -|   +.+.|.++|+++++.++++.+..
T Consensus       138 Gw--------GLt~Dg~~L~v--Sd---Gs~~l~~iDp~T~~v~~~I~V~~  175 (268)
T 3nok_A          138 GW--------GLCYWNGKLVR--SD---GGTMLTFHEPDGFALVGAVQVKL  175 (268)
T ss_dssp             CC--------CEEEETTEEEE--EC---SSSEEEEECTTTCCEEEEEECEE
T ss_pred             ee--------EEecCCCEEEE--EC---CCCEEEEEcCCCCeEEEEEEeCC
Confidence            21        12234454433  34   46689999999999999998853


No 11 
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=42.79  E-value=1.7e+02  Score=29.01  Aligned_cols=98  Identities=14%  Similarity=0.042  Sum_probs=58.7

Q ss_pred             EEEEeCCCCCeeEEEeeccCCcccccCcc-cCCccCCCCCceEEEeeccCCCCcCcEEEEecCCCCeEE-EEcCCCccCC
Q 007291          460 EIRLNLKTGESTRRQILSESDQVNLEAGM-VNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGEVKK-YFYGDNKYGG  537 (609)
Q Consensus       460 r~ridl~tG~~~~~~l~~~~~~~~~EfP~-In~~~~Gr~~Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~-~~~g~g~~~g  537 (609)
                      -.+||++||++.++.-..     .-.|+. |..  .|   ...|.+....    +.+..+|..|+++.. ..+|    .+
T Consensus        46 v~~iD~~tg~v~~~i~l~-----~~~fgeGi~~--~g---~~lyv~t~~~----~~v~viD~~t~~v~~~i~~g----~~  107 (266)
T 2iwa_A           46 VRQVALQTGKVENIHKMD-----DSYFGEGLTL--LN---EKLYQVVWLK----NIGFIYDRRTLSNIKNFTHQ----MK  107 (266)
T ss_dssp             EEEEETTTCCEEEEEECC-----TTCCEEEEEE--ET---TEEEEEETTC----SEEEEEETTTTEEEEEEECC----SS
T ss_pred             EEEEECCCCCEEEEEecC-----CCcceEEEEE--eC---CEEEEEEecC----CEEEEEECCCCcEEEEEECC----CC
Confidence            345899999987654321     112221 111  12   3688776432    678899999987544 3333    23


Q ss_pred             ccEeeecCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCCeeEEEEcC
Q 007291          538 EPFFLPRDANNSENEDDGYILAFVHDEKTWKSELQIVNAMNLQLEASIKLP  588 (609)
Q Consensus       538 EPvFVPr~~~~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~~l~~VArv~LP  588 (609)
                      |++=+-.        |.++|+  |-|   +...|.++|+.+++.++++.+.
T Consensus       108 ~g~glt~--------Dg~~l~--vs~---gs~~l~viD~~t~~v~~~I~Vg  145 (266)
T 2iwa_A          108 DGWGLAT--------DGKILY--GSD---GTSILYEIDPHTFKLIKKHNVK  145 (266)
T ss_dssp             SCCEEEE--------CSSSEE--EEC---SSSEEEEECTTTCCEEEEEECE
T ss_pred             CeEEEEE--------CCCEEE--EEC---CCCeEEEEECCCCcEEEEEEEC
Confidence            4432222        334444  344   3568999999999999999875


No 12 
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=41.56  E-value=81  Score=33.50  Aligned_cols=79  Identities=13%  Similarity=0.173  Sum_probs=46.9

Q ss_pred             ceEEEeeccCCCCcCcEEEEecCCCCeEEEEcCCCccCCccEeeecCCCCCCCCCCcEEEEEEEeCC-----CCceEEEE
Q 007291          499 QFAYLAIAEPWPKVSGFAKVDLSSGEVKKYFYGDNKYGGEPFFLPRDANNSENEDDGYILAFVHDEK-----TWKSELQI  573 (609)
Q Consensus       499 Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~~~~~~~EDDGyLLs~V~d~~-----~~~SeL~V  573 (609)
                      +++|.+........+.|..+|+.|+++..- ..-|   .+|=++-.+       |..+|.+.-....     .+...+.|
T Consensus        85 ~~vyV~n~~~~~~~~~VsVID~~t~~vv~~-I~vG---~~Pgia~Sp-------Dgk~lyVan~~~~~~~~G~~~~~Vsv  153 (426)
T 3c75_H           85 RRVYIQDPAHFAAITQQFVIDGSTGRILGM-TDGG---FLPHPVAAE-------DGSFFAQASTVFERIARGKRTDYVEV  153 (426)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTTTEEEEE-EEEC---SSCEEEECT-------TSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CEEEEECCCcCCCCCeEEEEECCCCEEEEE-EECC---CCCceEECC-------CCCEEEEEeccccccccCCCCCEEEE
Confidence            568877643111117899999999986532 2223   244222232       3344443322111     12347999


Q ss_pred             EeCCCCCeeEEEEcC
Q 007291          574 VNAMNLQLEASIKLP  588 (609)
Q Consensus       574 lDA~~l~~VArv~LP  588 (609)
                      ||+.+++.++++.+|
T Consensus       154 iD~~t~~vv~~I~v~  168 (426)
T 3c75_H          154 FDPVTFLPIADIELP  168 (426)
T ss_dssp             ECTTTCCEEEEEEET
T ss_pred             EECCCCcEEEEEECC
Confidence            999999999999997


No 13 
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=41.41  E-value=3e+02  Score=27.94  Aligned_cols=38  Identities=16%  Similarity=0.156  Sum_probs=26.8

Q ss_pred             CCCcEEEEEEEeCCC-----CceEEEEEeCCCCCeeEEEEcCC
Q 007291          552 EDDGYILAFVHDEKT-----WKSELQIVNAMNLQLEASIKLPS  589 (609)
Q Consensus       552 EDDGyLLs~V~d~~~-----~~SeL~VlDA~~l~~VArv~LP~  589 (609)
                      .|.+.|.+..++...     ...++.|+|+++.+.++++.++.
T Consensus       276 ~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~  318 (373)
T 2mad_H          276 KSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH  318 (373)
T ss_pred             CCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC
Confidence            345556555553211     24589999999999999998876


No 14 
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=40.41  E-value=43  Score=37.50  Aligned_cols=87  Identities=9%  Similarity=0.055  Sum_probs=52.0

Q ss_pred             CCceEEEeeccCCCCcCcEEEEecCCCCeEE-EEcCCCccCCccEeeecCCCCCCCCCCcEEEEEE-------------E
Q 007291          497 KTQFAYLAIAEPWPKVSGFAKVDLSSGEVKK-YFYGDNKYGGEPFFLPRDANNSENEDDGYILAFV-------------H  562 (609)
Q Consensus       497 ~~Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~-~~~g~g~~~gEPvFVPr~~~~~~~EDDGyLLs~V-------------~  562 (609)
                      ..||+|.+..+    -+.|+++|+.+.++.. -..+.+.- -+-+.+-+      -.|.+||++.-             .
T Consensus       100 DG~~lfVnd~~----~~rVavIdl~t~~~~~ii~ip~g~~-phg~~~~~------~p~~~~v~~~~~~~~p~~~dg~~l~  168 (595)
T 1fwx_A          100 DGRFLFMNDKA----NTRVARVRCDVMKCDAILEIPNAKG-IHGLRPQK------WPRSNYVFCNGEDETPLVNDGTNME  168 (595)
T ss_dssp             EEEEEEEEETT----TTEEEEEETTTTEEEEEEECSSCCS-EEEEEECC------SSBCSEEEEEECSCEESSCSSSSTT
T ss_pred             CCCEEEEEcCC----CCEEEEEECCCceEeeEEeCCCCCC-Ccceeeee------cCCCcEEEEecccccccCCCCcccc
Confidence            45799986433    2579999999988544 22322211 11122211      02456765442             1


Q ss_pred             eCCCCceEEEEEeCCCCCeeEEEEcCCcCCCCc
Q 007291          563 DEKTWKSELQIVNAMNLQLEASIKLPSRVPYGF  595 (609)
Q Consensus       563 d~~~~~SeL~VlDA~~l~~VArv~LP~rVP~GF  595 (609)
                      +.+...+-+-|+|+.+|+.++.|.++.. |-|.
T Consensus       169 ~~~~~~~~vtvID~~t~~v~~qI~Vgg~-pd~~  200 (595)
T 1fwx_A          169 DVANYVNVFTAVDADKWEVAWQVLVSGN-LDNC  200 (595)
T ss_dssp             CGGGEEEEEEEEETTTTEEEEEEEESSC-CCCE
T ss_pred             cccccCceEEEEECCCCeEEEEEEeCCC-ccce
Confidence            2234567899999999999999999653 4443


No 15 
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=39.91  E-value=2.8e+02  Score=27.27  Aligned_cols=36  Identities=17%  Similarity=0.186  Sum_probs=21.2

Q ss_pred             CCcEEEEEEEeCCCCceEEEEEeCCCCCeeEEEEcCCc
Q 007291          553 DDGYILAFVHDEKTWKSELQIVNAMNLQLEASIKLPSR  590 (609)
Q Consensus       553 DDGyLLs~V~d~~~~~SeL~VlDA~~l~~VArv~LP~r  590 (609)
                      |..||++.  +...+.=.++-+|...|+.++++.+|..
T Consensus       320 dg~~l~v~--~~~~~~v~v~~~~~~~l~~~~~~~~~~p  355 (365)
T 1jof_A          320 SDEWMAIT--DDQEGWLEIYRWKDEFLHRVARVRIPEP  355 (365)
T ss_dssp             CTTEEEEE--CSSSCEEEEEEEETTEEEEEEEEECCST
T ss_pred             CCCEEEEE--EcCCCeEEEEEEchhhCceeeEEEcCCC
Confidence            45676533  3333443445556666777888888754


No 16 
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=35.38  E-value=1e+02  Score=30.64  Aligned_cols=77  Identities=16%  Similarity=0.102  Sum_probs=47.0

Q ss_pred             eEEEeeccCCCCcCcEEEEecCCCCeEE-EEcCCCccCCccEeeecCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCC
Q 007291          500 FAYLAIAEPWPKVSGFAKVDLSSGEVKK-YFYGDNKYGGEPFFLPRDANNSENEDDGYILAFVHDEKTWKSELQIVNAMN  578 (609)
Q Consensus       500 y~Y~~~~~p~~~~~givK~Dl~tg~~~~-~~~g~g~~~gEPvFVPr~~~~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~~  578 (609)
                      ..|.+....  .-+.|.++|+.||++.. ...+.+.| +|- +.+..       +.-    ++.+.  ....+.|+|+++
T Consensus        33 ~Lyvstg~~--~~s~v~~iD~~tg~v~~~i~l~~~~f-geG-i~~~g-------~~l----yv~t~--~~~~v~viD~~t   95 (266)
T 2iwa_A           33 TLFESTGLY--GRSSVRQVALQTGKVENIHKMDDSYF-GEG-LTLLN-------EKL----YQVVW--LKNIGFIYDRRT   95 (266)
T ss_dssp             EEEEEECST--TTCEEEEEETTTCCEEEEEECCTTCC-EEE-EEEET-------TEE----EEEET--TCSEEEEEETTT
T ss_pred             eEEEECCCC--CCCEEEEEECCCCCEEEEEecCCCcc-eEE-EEEeC-------CEE----EEEEe--cCCEEEEEECCC
Confidence            688765431  13689999999999654 33444333 221 22221       212    23333  445799999999


Q ss_pred             CCeeEEEEcCCcCCCCc
Q 007291          579 LQLEASIKLPSRVPYGF  595 (609)
Q Consensus       579 l~~VArv~LP~rVP~GF  595 (609)
                      ++.++++..+  .|.|.
T Consensus        96 ~~v~~~i~~g--~~~g~  110 (266)
T 2iwa_A           96 LSNIKNFTHQ--MKDGW  110 (266)
T ss_dssp             TEEEEEEECC--SSSCC
T ss_pred             CcEEEEEECC--CCCeE
Confidence            9999999887  44443


No 17 
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=34.99  E-value=2.6e+02  Score=29.16  Aligned_cols=121  Identities=10%  Similarity=0.013  Sum_probs=68.7

Q ss_pred             EEEEEeCCCCCeeEEEeeccCCcccccCcccCCccCCCCCceEEEeecc-C---C-CCcCcEEEEecCCCCeE-EEEcCC
Q 007291          459 SEIRLNLKTGESTRRQILSESDQVNLEAGMVNRNSLGRKTQFAYLAIAE-P---W-PKVSGFAKVDLSSGEVK-KYFYGD  532 (609)
Q Consensus       459 ~r~ridl~tG~~~~~~l~~~~~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~-p---~-~~~~givK~Dl~tg~~~-~~~~g~  532 (609)
                      .-++||+.|+++..+--.       ...|.   -......|+.|.+..- +   + ..-+.|..+|..|+++. ....+.
T Consensus        60 ~V~ViD~~t~~v~~~I~v-------G~~P~---va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~  129 (386)
T 3sjl_D           60 QQFVIDGEAGRVIGMIDG-------GFLPN---PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPD  129 (386)
T ss_dssp             EEEEEETTTTEEEEEEEE-------CSSCE---EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT
T ss_pred             EEEEEECCCCeEEEEEEC-------CCCCc---EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCC
Confidence            356789999887643221       11231   1223456788887521 0   0 01256999999999854 444454


Q ss_pred             Cc---cCCccEeeecCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCCeeEEEEcCCc---CCCCcccc
Q 007291          533 NK---YGGEPFFLPRDANNSENEDDGYILAFVHDEKTWKSELQIVNAMNLQLEASIKLPSR---VPYGFHGT  598 (609)
Q Consensus       533 g~---~~gEPvFVPr~~~~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~~l~~VArv~LP~r---VP~GFHG~  598 (609)
                      |.   .+..|--+.=.      .|..+|.+.  +. .....+.|+|+.+.+.++++.+|..   .|.|-|..
T Consensus       130 g~r~~~g~~P~~~a~s------pDGk~lyVa--n~-~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~  192 (386)
T 3sjl_D          130 APRFLVGTYPWMTSLT------PDGKTLLFY--QF-SPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTF  192 (386)
T ss_dssp             CCCCCBSCCGGGEEEC------TTSSEEEEE--EC-SSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEE
T ss_pred             ccccccCCCCceEEEc------CCCCEEEEE--Ec-CCCCeEEEEECCCCcEEEEEECCCcceeecCCCcee
Confidence            21   23344333222      245565543  32 1245799999999999999998843   35554443


No 18 
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=33.66  E-value=2.5e+02  Score=28.93  Aligned_cols=80  Identities=8%  Similarity=-0.000  Sum_probs=46.4

Q ss_pred             eEEEeeccCCCCcCcEEEEecCCCCeEEEEcCCCccCCccEeeecCCCCCCCCCCcEEEEEEEeCC---CCceEEEEEeC
Q 007291          500 FAYLAIAEPWPKVSGFAKVDLSSGEVKKYFYGDNKYGGEPFFLPRDANNSENEDDGYILAFVHDEK---TWKSELQIVNA  576 (609)
Q Consensus       500 y~Y~~~~~p~~~~~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~~~~~~~EDDGyLLs~V~d~~---~~~SeL~VlDA  576 (609)
                      .+|..........+.+.-+|..|+++..- ..-|.   +|-++..+.+     .--|+-...++..   +....+.|+|+
T Consensus        33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~-i~vG~---~P~i~~spDg-----~~lyVan~~~~r~~~G~~~~~VsviD~  103 (368)
T 1mda_H           33 RSHITLPAYFAGTTENWVSCAGCGVTLGH-SLGAF---LSLAVAGHSG-----SDFALASTSFARSAKGKRTDYVEVFDP  103 (368)
T ss_dssp             EEEEEECTTTCSSEEEEEEETTTTEEEEE-EEECT---TCEEEECTTS-----SCEEEEEEEETTTTSSSEEEEEEEECT
T ss_pred             eEEEECCccCCccceEEEEECCCCeEEEE-EeCCC---CCceEECCCC-----CEEEEEcccccccccCCCCCEEEEEEC
Confidence            57876533221222788999999986543 22232   3434444421     1223222222221   12357999999


Q ss_pred             CCCCeeEEEEcC
Q 007291          577 MNLQLEASIKLP  588 (609)
Q Consensus       577 ~~l~~VArv~LP  588 (609)
                      .++++++++.+|
T Consensus       104 ~T~~vv~~I~v~  115 (368)
T 1mda_H          104 VTFLPIADIELP  115 (368)
T ss_dssp             TTCCEEEEEEET
T ss_pred             CCCCEEEEEECC
Confidence            999999999997


No 19 
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=32.48  E-value=1.9e+02  Score=29.39  Aligned_cols=80  Identities=11%  Similarity=0.128  Sum_probs=45.9

Q ss_pred             CceEEEeeccCCCCcCcEEEEecCCCCeEEEEcCCCccCCccEeeecCCCCCCCCCCcEEEEEEE--eC-CC--CceEEE
Q 007291          498 TQFAYLAIAEPWPKVSGFAKVDLSSGEVKKYFYGDNKYGGEPFFLPRDANNSENEDDGYILAFVH--DE-KT--WKSELQ  572 (609)
Q Consensus       498 ~Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~~~~~~~EDDGyLLs~V~--d~-~~--~~SeL~  572 (609)
                      .+++|.+..........|..+|+.++++..- ...|.-+ +..|-|         |..+|.+.-.  +. ..  ....+.
T Consensus        32 ~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-i~~g~~p-~i~~sp---------Dg~~lyv~n~~~~~~~rg~~~~~v~  100 (373)
T 2mad_H           32 GRRSYINLPAHHSAIIQQWVLDAGSGSILGH-VNGGFLP-NPVAAH---------SGSEFALASTSFSRIAKGKRTDYVE  100 (373)
T ss_pred             CCEEEEeCCcccCCccEEEEEECCCCeEEEE-ecCCCCC-CeEECC---------CCCEEEEEeccccccccCCCCCeEE
Confidence            3689987541111111789999999986532 3444322 333332         3344443321  11 11  123577


Q ss_pred             EEeCCCCCeeEEEEcC
Q 007291          573 IVNAMNLQLEASIKLP  588 (609)
Q Consensus       573 VlDA~~l~~VArv~LP  588 (609)
                      |+|+.++++++++.++
T Consensus       101 viD~~t~~~~~~i~~~  116 (373)
T 2mad_H          101 VFDPVTFLPIADIELP  116 (373)
T ss_pred             EEECCCCcEEEEEECC
Confidence            9999999999999997


No 20 
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=30.78  E-value=1.6e+02  Score=31.87  Aligned_cols=93  Identities=10%  Similarity=0.099  Sum_probs=52.8

Q ss_pred             CCCceEEEeeccCCCCcCcEEEEecCCC----CeEEEEcCCCccCCccEeeecCCCCCCCCCCcEEEEEEEeC-CCCceE
Q 007291          496 RKTQFAYLAIAEPWPKVSGFAKVDLSSG----EVKKYFYGDNKYGGEPFFLPRDANNSENEDDGYILAFVHDE-KTWKSE  570 (609)
Q Consensus       496 r~~Ry~Y~~~~~p~~~~~givK~Dl~tg----~~~~~~~g~g~~~gEPvFVPr~~~~~~~EDDGyLLs~V~d~-~~~~Se  570 (609)
                      ++-||.|..+...    +.|.-+|+.+.    +..+- .++.... |++=..+|-. -..-.||+.|+..-+. ..+...
T Consensus        93 ~~r~~l~v~~l~s----~~I~viD~~t~p~~p~~~k~-ie~~~~~-~~~g~s~Ph~-~~~~pdGi~Vs~~g~~~g~~~g~  165 (462)
T 2ece_A           93 IERRFLIVPGLRS----SRIYIIDTKPNPREPKIIKV-IEPEEVK-KVSGYSRLHT-VHCGPDAIYISALGNEEGEGPGG  165 (462)
T ss_dssp             CCSCEEEEEBTTT----CCEEEEECCSCTTSCEEEEE-ECHHHHH-HHHCEEEEEE-EEECSSCEEEEEEEETTSCSCCE
T ss_pred             ccCCEEEEccCCC----CeEEEEECCCCCCCceeeee-echhhcc-cccCCCcccc-eeECCCeEEEEcCCCcCCCCCCe
Confidence            6778999865442    67888998765    22222 1111110 0000111100 0011345666666663 345679


Q ss_pred             EEEEeCCCCCeeEEEEcC---CcCCCCc
Q 007291          571 LQIVNAMNLQLEASIKLP---SRVPYGF  595 (609)
Q Consensus       571 L~VlDA~~l~~VArv~LP---~rVP~GF  595 (609)
                      |++||+++.+.++++..+   ..++|.|
T Consensus       166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~  193 (462)
T 2ece_A          166 ILMLDHYSFEPLGKWEIDRGDQYLAYDF  193 (462)
T ss_dssp             EEEECTTTCCEEEECCSBCTTCCCCCCE
T ss_pred             EEEEECCCCeEEEEEccCCCCccccceE
Confidence            999999999999999865   4567766


No 21 
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=28.80  E-value=1.7e+02  Score=29.21  Aligned_cols=71  Identities=14%  Similarity=0.003  Sum_probs=45.2

Q ss_pred             ceEEEeeccCCCCcCcEEEEecCCCCeEEEEcCCCccCCccEeeecCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCC
Q 007291          499 QFAYLAIAEPWPKVSGFAKVDLSSGEVKKYFYGDNKYGGEPFFLPRDANNSENEDDGYILAFVHDEKTWKSELQIVNAMN  578 (609)
Q Consensus       499 Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~~~~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~~  578 (609)
                      ...|.+.+.-    ..|.++|++||++..-..++. +.+|-+-+ .       .+--|++    +.  ....+.|+|+++
T Consensus        65 ~~Ly~stG~~----g~v~~iD~~Tgkv~~~~l~~~-~FgeGit~-~-------g~~Ly~l----tw--~~~~v~V~D~~T  125 (268)
T 3nok_A           65 GHFFESTGHQ----GTLRQLSLESAQPVWMERLGN-IFAEGLAS-D-------GERLYQL----TW--TEGLLFTWSGMP  125 (268)
T ss_dssp             TEEEEEETTT----TEEEECCSSCSSCSEEEECTT-CCEEEEEE-C-------SSCEEEE----ES--SSCEEEEEETTT
T ss_pred             CEEEEEcCCC----CEEEEEECCCCcEEeEECCCC-cceeEEEE-e-------CCEEEEE----Ec--cCCEEEEEECCc
Confidence            4677766442    349999999998554325543 33344422 1       1233433    32  345799999999


Q ss_pred             CCeeEEEEcC
Q 007291          579 LQLEASIKLP  588 (609)
Q Consensus       579 l~~VArv~LP  588 (609)
                      ++.++++..+
T Consensus       126 l~~~~ti~~~  135 (268)
T 3nok_A          126 PQRERTTRYS  135 (268)
T ss_dssp             TEEEEEEECS
T ss_pred             CcEEEEEeCC
Confidence            9999999986


No 22 
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=27.05  E-value=4e+02  Score=25.10  Aligned_cols=102  Identities=8%  Similarity=0.025  Sum_probs=55.4

Q ss_pred             EEeCCCCCeeEEEeeccCCcccccCcccCCccCCCCCceEEEeeccCCCCcCcEEEEecCCCCe-EEEEcCCCccCCccE
Q 007291          462 RLNLKTGESTRRQILSESDQVNLEAGMVNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGEV-KKYFYGDNKYGGEPF  540 (609)
Q Consensus       462 ridl~tG~~~~~~l~~~~~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~p~~~~~givK~Dl~tg~~-~~~~~g~g~~~gEPv  540 (609)
                      .+|+.+|+..+.....   ..+. ...+++     ..++.|.+....    +.|..+|+.+++. ... ...+   ..|.
T Consensus        24 ~~d~~~~~~~~~~~~~---~~~~-~~~~s~-----dg~~l~~~~~~~----~~i~~~d~~~~~~~~~~-~~~~---~~~~   86 (331)
T 3u4y_A           24 FFSTDTLEILNQITLG---YDFV-DTAITS-----DCSNVVVTSDFC----QTLVQIETQLEPPKVVA-IQEG---QSSM   86 (331)
T ss_dssp             EEETTTCCEEEEEECC---CCEE-EEEECS-----SSCEEEEEESTT----CEEEEEECSSSSCEEEE-EEEC---SSCC
T ss_pred             EEeCcccceeeeEEcc---CCcc-eEEEcC-----CCCEEEEEeCCC----CeEEEEECCCCceeEEe-cccC---CCCc
Confidence            4678888775432221   1111 222222     345788765432    4899999999985 322 2222   3344


Q ss_pred             e-eecCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCCeeEEEEcC
Q 007291          541 F-LPRDANNSENEDDGYILAFVHDEKTWKSELQIVNAMNLQLEASIKLP  588 (609)
Q Consensus       541 F-VPr~~~~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~~l~~VArv~LP  588 (609)
                      . +--.      .|..+|+  +.+...+...+.|+|..+.+.+..+...
T Consensus        87 ~~~~~s------~dg~~l~--~~~~~~~~~~i~v~d~~~~~~~~~~~~~  127 (331)
T 3u4y_A           87 ADVDIT------PDDQFAV--TVTGLNHPFNMQSYSFLKNKFISTIPIP  127 (331)
T ss_dssp             CCEEEC------TTSSEEE--ECCCSSSSCEEEEEETTTTEEEEEEECC
T ss_pred             cceEEC------CCCCEEE--EecCCCCcccEEEEECCCCCeEEEEECC
Confidence            3 3221      2445665  4333333448999999888777776654


No 23 
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=26.82  E-value=5.5e+02  Score=26.63  Aligned_cols=254  Identities=13%  Similarity=0.127  Sum_probs=131.5

Q ss_pred             eeeCCeEEEEEc-----CCccEEEecCCCCCcccceeecccCccccccccCCeecCCCCeeEEEEeeecc----CCcEEE
Q 007291          261 VYFNNRILAMSE-----DDLPYQVRITPSGDLETVGRYNFNHQLKSTMIAHPKVDPVSKELFALSYDVVQ----KPYLKY  331 (609)
Q Consensus       261 v~~~grLlAl~E-----~g~Py~ldi~p~~tLeT~G~~df~g~L~~~~tAHPk~Dp~TGel~~f~y~~~~----~p~l~~  331 (609)
                      .+.+.++|...+     ++.-+.||  . .|++.+++..-+.      ..|-.+.|+...+|.-+....+    ..-=.+
T Consensus        41 ~pd~~~vyV~~~~~~~~~~~V~ViD--~-~t~~v~~~I~vG~------~P~va~spDG~~lyVan~~~~r~~~G~~~~~V  111 (386)
T 3sjl_D           41 APDARRVYVNDPAHFAAVTQQFVID--G-EAGRVIGMIDGGF------LPNPVVADDGSFIAHASTVFSRIARGERTDYV  111 (386)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEE--T-TTTEEEEEEEECS------SCEEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred             CCCCCEEEEEcCcccCCCCEEEEEE--C-CCCeEEEEEECCC------CCcEEECCCCCEEEEEcccccccccCCCCCEE
Confidence            456788998877     35566776  6 7888888765432      2367788887777765421100    001246


Q ss_pred             EEEcCCCCCcceEEEeCCc------cccccccccCCC--eEEEecCCccccHHHHhcCCCCeeecCCCCeEEEEEeCcCC
Q 007291          332 FRFSADGDKSPDVEIHLPV------PTMMHDFAITEN--FVVIPDQQVVFKLQEMITGGSPVIYDKNKKSRFGILAKNAK  403 (609)
Q Consensus       332 ~~~d~~G~~~~~~~i~~~~------p~~~HDFaiTen--YvV~~d~p~~~~~~~m~~g~~~~~~d~~~~tr~~VipR~~~  403 (609)
                      .+||..... ....|+++.      -...|.++++.+  |+.                    ..+......+.||+-.+.
T Consensus       112 sviD~~t~~-v~~~I~v~~g~r~~~g~~P~~~a~spDGk~ly--------------------Van~~~~~~VsVID~~t~  170 (386)
T 3sjl_D          112 EVFDPVTLL-PTADIELPDAPRFLVGTYPWMTSLTPDGKTLL--------------------FYQFSPAPAVGVVDLEGK  170 (386)
T ss_dssp             EEECTTTCC-EEEEEEETTCCCCCBSCCGGGEEECTTSSEEE--------------------EEECSSSCEEEEEETTTT
T ss_pred             EEEECCCCe-EEEEEECCCccccccCCCCceEEEcCCCCEEE--------------------EEEcCCCCeEEEEECCCC
Confidence            778865322 223444432      235666776642  332                    223222356777876543


Q ss_pred             CCCceEEEecCceeEEeccccccCCCCCcEEEEEeecCCCcchhhhccccccCceEEEEEeCCC-CCeeEEE--eeccCC
Q 007291          404 DSNDIIWIESPDTFCFHLWNAWEEPETDEIVVIGSCMTPADSIFNECDESLKSVLSEIRLNLKT-GESTRRQ--ILSESD  480 (609)
Q Consensus       404 ~~~~v~w~e~p~~f~fH~~NA~Ee~~~~~vVv~~~~~~~~d~~~~~~~~~l~~~l~r~ridl~t-G~~~~~~--l~~~~~  480 (609)
                        ..++.+.+|.|..     .|-.+  ...++ ..|..              +  ..+.+++.+ |++....  +..   
T Consensus       171 --~vv~tI~v~g~~~-----~~P~g--~~~~~-~~~~D--------------G--~~~~v~~~~~g~v~~~~~~~~~---  221 (386)
T 3sjl_D          171 --AFKRMLDVPDCYH-----IFPTA--PDTFF-MHCRD--------------G--SLAKVAFGTEGTPEITHTEVFH---  221 (386)
T ss_dssp             --EEEEEEECCSEEE-----EEEEE--TTEEE-EEETT--------------S--CEEEEECCSSSCCEEEECCCCS---
T ss_pred             --cEEEEEECCCcce-----eecCC--CceeE-EECCC--------------C--CEEEEECCCCCeEEEeecceec---
Confidence              4567788887621     22221  12222 22321              1  244455654 5542211  110   


Q ss_pred             cccccCccc-CCccCCCCCceEEEeeccCCCCcCcEEEEecCCCCe---EEEE-cC-----CCccCC--ccEeeecCCCC
Q 007291          481 QVNLEAGMV-NRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGEV---KKYF-YG-----DNKYGG--EPFFLPRDANN  548 (609)
Q Consensus       481 ~~~~EfP~I-n~~~~Gr~~Ry~Y~~~~~p~~~~~givK~Dl~tg~~---~~~~-~g-----~g~~~g--EPvFVPr~~~~  548 (609)
                        .-.-|.. |..|.....|+.|... +     ..+.-+|+.++..   ..|. +.     .|.-++  .++=+      
T Consensus       222 --~~~~~~~~~~~~~~~dG~~~~vs~-~-----g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~------  287 (386)
T 3sjl_D          222 --PEDEFLINHPAYSQKAGRLVWPTY-T-----GKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAY------  287 (386)
T ss_dssp             --CTTSCBCSCCEEETTTTEEEEEBT-T-----SEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEE------
T ss_pred             --cccccccccceeEcCCCcEEEEeC-C-----CEEEEEECCCCcceeecceeccccccccccccCCCcceeeE------
Confidence              1112332 2344444557778543 2     2466778876653   2343 11     111111  11111      


Q ss_pred             CCCCCCcEEEEEEEeCC--C---CceEEEEEeCCCCCeeEEEEcCC
Q 007291          549 SENEDDGYILAFVHDEK--T---WKSELQIVNAMNLQLEASIKLPS  589 (609)
Q Consensus       549 ~~~EDDGyLLs~V~d~~--~---~~SeL~VlDA~~l~~VArv~LP~  589 (609)
                        ..|.+.|....++..  +   ...+++|+|+++.+.++++.++.
T Consensus       288 --~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~  331 (386)
T 3sjl_D          288 --HRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH  331 (386)
T ss_dssp             --ETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE
T ss_pred             --CCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC
Confidence              134566666666432  1   23699999999999999999985


No 24 
>3c5j_A HLA class II histocompatibility antigen, DR alpha; HLA, MHC class II, glycoprotein, immune response, membrane, transmembrane, GTP-binding, methylation; HET: NAG; 1.80A {Homo sapiens} PDB: 1d5x_A* 1d5z_A* 1d6e_A* 1d5m_A 1fyt_A* 1hqr_A 1j8h_A* 1r5i_A 1seb_A 1zgl_A 2seb_A* 1fv1_A* 2ipk_A* 3pdo_A 3pgc_A 3pgd_A 1ymm_A* 1aqd_A 2g9h_A* 1h15_A ...
Probab=22.15  E-value=3.3e+02  Score=24.73  Aligned_cols=106  Identities=18%  Similarity=0.164  Sum_probs=59.0

Q ss_pred             CCChhHHHH--HHHHHHHHHHhhhcccCCCCCCCCCCccccccCCcCCC-CCCCcccceEeeecCCCCceEEEeecCCCC
Q 007291           94 QWNPLQRAA--AMALDMAENALVSRERQHPLPKTADPRVQIGGNFAPVP-ERPVRHGLPVTGSIPECINGVYLRNGANPL  170 (609)
Q Consensus        94 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~g~fapv~-ee~~~~~L~V~G~IP~~L~G~~~RNGPnp~  170 (609)
                      +|+....++  ...-..++..+..  ....|..++-|.+.+...- +.. .......|.|.|--|+.++=+.+|||=. .
T Consensus        53 ~w~~~~~~~~~~~~K~yL~~~l~~--gk~~l~r~~~P~v~v~~~~-~~~~~~~~~L~C~a~gFyP~~i~v~W~k~g~~-~  128 (181)
T 3c5j_A           53 SFEAQGALANIAVDKANLEIMTKR--SNYTPITNVPPEVTVLTNS-PVELREPNVLICFIDKFTPPVVNVTWLRNGKP-V  128 (181)
T ss_dssp             BCCHHHHHHHHHHHHHHHHHHHHH--TTTCCCCCBCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEE-E
T ss_pred             cccccchHHHHHHHHHHhHHhhhh--cccCcccccCCceecccCC-hhhcCCCCeEEEEEeEEECCCCEEEEEECCEE-C
Confidence            588644332  2222334443322  1233545566776665431 121 1222334568999999999999999953 2


Q ss_pred             cCC-CCCCcCccCCCceE---EEEEcCC-ceeeeeeee
Q 007291          171 FEP-VAGHHFFDGDGMVH---AVTIGNG-SASYACRFT  203 (609)
Q Consensus       171 f~p-~~~~H~FDGDGMvh---a~~f~~G-~a~y~~RfV  203 (609)
                      .+. .....+.+|||.-+   .+.+..+ ...|+|+.-
T Consensus       129 ~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~  166 (181)
T 3c5j_A          129 TTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRVE  166 (181)
T ss_dssp             CSSCEECCCEECTTSCEEEEEEEEECCCTTCEEEEEEE
T ss_pred             CCceeecCcEECCCCCEEEEEEEEEeCCCCCEEEEEEE
Confidence            222 12345678999643   3666643 347999854


No 25 
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=20.43  E-value=5.6e+02  Score=24.40  Aligned_cols=75  Identities=12%  Similarity=0.117  Sum_probs=41.4

Q ss_pred             CCeEEEEEcC---CccEEEecCCCCCcccceeecccCccccccccCCeecCCCCeeEEEEeeeccCCcEEEEEEcCCCCC
Q 007291          264 NNRILAMSED---DLPYQVRITPSGDLETVGRYNFNHQLKSTMIAHPKVDPVSKELFALSYDVVQKPYLKYFRFSADGDK  340 (609)
Q Consensus       264 ~grLlAl~E~---g~Py~ldi~p~~tLeT~G~~df~g~L~~~~tAHPk~Dp~TGel~~f~y~~~~~p~l~~~~~d~~G~~  340 (609)
                      +|+||+..+.   +.-+.++++. ++++.+....-.+.    -..+-.++|+...|+.-++.   ...+.+|.++.+|..
T Consensus        50 dg~l~~~~~~~~~~~v~~~~~~~-g~~~~~~~~~~~~~----~p~~~a~spdg~~l~~~~~~---~~~v~v~~~~~~g~~  121 (347)
T 3hfq_A           50 KDCLYSVDKEDDEGGIAAWQIDG-QTAHKLNTVVAPGT----PPAYVAVDEARQLVYSANYH---KGTAEVMKIAADGAL  121 (347)
T ss_dssp             TCEEEEEEEETTEEEEEEEEEET-TEEEEEEEEEEESC----CCSEEEEETTTTEEEEEETT---TTEEEEEEECTTSCE
T ss_pred             CCeEEEEEecCCCceEEEEEecC-CcEEEeeeeecCCC----CCEEEEECCCCCEEEEEeCC---CCEEEEEEeCCCCCe
Confidence            5778887763   4455666544 66665554321111    11223457764445555543   345788888888876


Q ss_pred             cceEEE
Q 007291          341 SPDVEI  346 (609)
Q Consensus       341 ~~~~~i  346 (609)
                      .....+
T Consensus       122 ~~~~~~  127 (347)
T 3hfq_A          122 TLTDTV  127 (347)
T ss_dssp             EEEEEE
T ss_pred             eeccee
Confidence            544444


Done!