Query 007291
Match_columns 609
No_of_seqs 252 out of 1072
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 22:05:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007291.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007291hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zaka2 g.41.2.1 (A:128-158) M 34.7 4.3 0.00031 26.0 0.2 16 308-323 3-18 (31)
2 d1l0qa2 b.69.2.3 (A:1-301) Sur 32.0 95 0.0069 26.4 9.5 72 499-589 2-74 (301)
3 d1l0qa2 b.69.2.3 (A:1-301) Sur 30.8 1.3E+02 0.0092 25.5 10.1 85 498-601 211-296 (301)
4 d1qksa2 b.70.2.1 (A:136-567) C 30.2 21 0.0016 34.7 4.9 33 556-588 381-413 (432)
5 d1m7ja2 b.92.1.6 (A:420-480) N 28.6 6.4 0.00047 28.7 0.3 36 568-603 7-42 (61)
6 d1qfma1 b.69.7.1 (A:1-430) Pro 24.7 2.7E+02 0.02 26.1 13.0 62 512-579 207-269 (430)
7 d1jmxb_ b.69.2.2 (B:) Quinohem 22.8 2.2E+02 0.016 24.3 10.5 62 513-589 272-333 (346)
8 d1hzua2 b.70.2.1 (A:118-543) C 21.5 31 0.0023 32.8 4.1 33 556-588 375-407 (426)
9 d1pbyb_ b.69.2.2 (B:) Quinohem 21.1 2.3E+02 0.017 24.0 13.5 84 497-588 44-134 (337)
10 d1qnia2 b.69.3.1 (A:10-450) Ni 19.1 96 0.007 30.6 7.4 82 498-590 83-177 (441)
No 1
>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}
Probab=34.75 E-value=4.3 Score=25.98 Aligned_cols=16 Identities=31% Similarity=0.823 Sum_probs=13.5
Q ss_pred eecCCCCeeEEEEeee
Q 007291 308 KVDPVSKELFALSYDV 323 (609)
Q Consensus 308 k~Dp~TGel~~f~y~~ 323 (609)
++||+|||+|-+-|+.
T Consensus 3 R~DP~TG~iYH~~f~p 18 (31)
T d1zaka2 3 RLDPVTGKIYHLKYSP 18 (31)
T ss_dssp EECTTTCCEEESSSSC
T ss_pred cCCCCCCcEeEEecCC
Confidence 5799999999887764
No 2
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}
Probab=32.04 E-value=95 Score=26.38 Aligned_cols=72 Identities=19% Similarity=0.315 Sum_probs=45.1
Q ss_pred ceEEEeeccCCCCcCcEEEEecCCCCeE-EEEcCCCccCCccEeeecCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCC
Q 007291 499 QFAYLAIAEPWPKVSGFAKVDLSSGEVK-KYFYGDNKYGGEPFFLPRDANNSENEDDGYILAFVHDEKTWKSELQIVNAM 577 (609)
Q Consensus 499 Ry~Y~~~~~p~~~~~givK~Dl~tg~~~-~~~~g~g~~~gEPvFVPr~~~~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~ 577 (609)
-|+|.+..+. +.|..+|++|+++. .+..| ..|.=|.= ..|..+|++. +. ....+.|+|..
T Consensus 2 ~~~yV~~~~~----~~v~v~D~~t~~~~~~i~~g-----~~p~~va~------spdG~~l~v~--~~--~~~~i~v~d~~ 62 (301)
T d1l0qa2 2 TFAYIANSES----DNISVIDVTSNKVTATIPVG-----SNPMGAVI------SPDGTKVYVA--NA--HSNDVSIIDTA 62 (301)
T ss_dssp EEEEEEETTT----TEEEEEETTTTEEEEEEECS-----SSEEEEEE------CTTSSEEEEE--EG--GGTEEEEEETT
T ss_pred eEEEEEECCC----CEEEEEECCCCeEEEEEECC-----CCceEEEE------eCCCCEEEEE--EC--CCCEEEEEECC
Confidence 3888765432 46899999999854 44333 34543322 1355676532 22 23369999999
Q ss_pred CCCeeEEEEcCC
Q 007291 578 NLQLEASIKLPS 589 (609)
Q Consensus 578 ~l~~VArv~LP~ 589 (609)
+.+.++++....
T Consensus 63 t~~~~~~~~~~~ 74 (301)
T d1l0qa2 63 TNNVIATVPAGS 74 (301)
T ss_dssp TTEEEEEEECSS
T ss_pred CCceeeeeeccc
Confidence 999888887653
No 3
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}
Probab=30.83 E-value=1.3e+02 Score=25.48 Aligned_cols=85 Identities=13% Similarity=0.259 Sum_probs=51.1
Q ss_pred CceEEEeeccCCCCcCcEEEEecCCCCeEE-EEcCCCccCCccEeeecCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeC
Q 007291 498 TQFAYLAIAEPWPKVSGFAKVDLSSGEVKK-YFYGDNKYGGEPFFLPRDANNSENEDDGYILAFVHDEKTWKSELQIVNA 576 (609)
Q Consensus 498 ~Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~-~~~g~g~~~gEPvFVPr~~~~~~~EDDGyLLs~V~d~~~~~SeL~VlDA 576 (609)
.++.|.+..+. ..+.|..+|+.+++... +.. +++|.-|.=. .|..+|++. .. ....+.|+|.
T Consensus 211 g~~~~v~~~~~--~~~~v~v~D~~t~~~~~~~~~-----~~~~~~va~s------pdg~~l~va--~~--~~~~i~v~D~ 273 (301)
T d1l0qa2 211 GTKAYVTNVDK--YFNTVSMIDTGTNKITARIPV-----GPDPAGIAVT------PDGKKVYVA--LS--FCNTVSVIDT 273 (301)
T ss_dssp SSEEEEEEECS--SCCEEEEEETTTTEEEEEEEC-----CSSEEEEEEC------TTSSEEEEE--ET--TTTEEEEEET
T ss_pred ccccccccccc--eeeeeeeeecCCCeEEEEEcC-----CCCEEEEEEe------CCCCEEEEE--EC--CCCeEEEEEC
Confidence 44556554442 23568888999987543 322 2345444432 244466443 32 2236999999
Q ss_pred CCCCeeEEEEcCCcCCCCccccccc
Q 007291 577 MNLQLEASIKLPSRVPYGFHGTFVD 601 (609)
Q Consensus 577 ~~l~~VArv~LP~rVP~GFHG~fv~ 601 (609)
++.+.++++.+-. -|+++ |.|+.
T Consensus 274 ~t~~~~~~~~vg~-~P~~~-g~f~~ 296 (301)
T d1l0qa2 274 ATNTITATMAVGK-NPYAS-GQFIG 296 (301)
T ss_dssp TTTEEEEEEECSS-SEECC-SSCEE
T ss_pred CCCeEEEEEeCCC-CCcEe-EEEcc
Confidence 9999999987743 47776 55554
No 4
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}
Probab=30.19 E-value=21 Score=34.68 Aligned_cols=33 Identities=27% Similarity=0.247 Sum_probs=27.9
Q ss_pred EEEEEEEeCCCCceEEEEEeCCCCCeeEEEEcC
Q 007291 556 YILAFVHDEKTWKSELQIVNAMNLQLEASIKLP 588 (609)
Q Consensus 556 yLLs~V~d~~~~~SeL~VlDA~~l~~VArv~LP 588 (609)
+|+.-+....+..+.++|+|++++++.++++-|
T Consensus 381 ~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~ 413 (432)
T d1qksa2 381 EVWFSVWNGKDQESALVVVDDKTLELKHVIKDE 413 (432)
T ss_dssp EEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred EEEEEEecCCCCCCcEEEEECCCceEEeEecCC
Confidence 777777777777889999999999999988775
No 5
>d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]}
Probab=28.56 E-value=6.4 Score=28.67 Aligned_cols=36 Identities=17% Similarity=0.390 Sum_probs=31.3
Q ss_pred ceEEEEEeCCCCCeeEEEEcCCcCCCCcccccccCc
Q 007291 568 KSELQIVNAMNLQLEASIKLPSRVPYGFHGTFVDSK 603 (609)
Q Consensus 568 ~SeL~VlDA~~l~~VArv~LP~rVP~GFHG~fv~~~ 603 (609)
...|+|||..++..-|..+-|...+-|++..|++.+
T Consensus 7 ~ADlvvfDp~~i~d~~~~~~~~~~~~Gi~~v~VnG~ 42 (61)
T d1m7ja2 7 YADLVVFDPATVADSATFEHPTERAAGIHSVYVNGA 42 (61)
T ss_dssp BCCEEEECTTTCBCCCCSSSTTCCCBSEEEEEETTE
T ss_pred CCCEEEECHHHccCcccccccccccceeEEEEECCE
Confidence 357999999998877888889999999999999875
No 6
>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=24.69 E-value=2.7e+02 Score=26.10 Aligned_cols=62 Identities=11% Similarity=0.046 Sum_probs=37.8
Q ss_pred cCcEEEEecCCCCe-EEEEcCCCccCCccEeeecCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCC
Q 007291 512 VSGFAKVDLSSGEV-KKYFYGDNKYGGEPFFLPRDANNSENEDDGYILAFVHDEKTWKSELQIVNAMNL 579 (609)
Q Consensus 512 ~~givK~Dl~tg~~-~~~~~g~g~~~gEPvFVPr~~~~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~~l 579 (609)
...+.++.+.++.. ....+++ ..++.|+... ....|.-||+..+....+..++++++|+.+.
T Consensus 207 ~~~v~~h~lgt~~~~d~~v~~e---~d~~~~~~~~---~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~ 269 (430)
T d1qfma1 207 HQKLYYHVLGTDQSEDILCAEF---PDEPKWMGGA---ELSDDGRYVLLSIREGCDPVNRLWYCDLQQE 269 (430)
T ss_dssp CCEEEEEETTSCGGGCEEEECC---TTCTTCEEEE---EECTTSCEEEEEEECSSSSCCEEEEEEGGGS
T ss_pred cceEEEEECCCCcccccccccc---ccCCceEEee---eccCCcceeeEEeeccCCccEEEEEeeCCCc
Confidence 35677777777642 1222221 1234454432 1235667998888887778889999998754
No 7
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}
Probab=22.79 E-value=2.2e+02 Score=24.28 Aligned_cols=62 Identities=21% Similarity=0.141 Sum_probs=36.5
Q ss_pred CcEEEEecCCCCeEEEEcCCCccCCccEeeecCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCCeeEEEEcCC
Q 007291 513 SGFAKVDLSSGEVKKYFYGDNKYGGEPFFLPRDANNSENEDDGYILAFVHDEKTWKSELQIVNAMNLQLEASIKLPS 589 (609)
Q Consensus 513 ~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~~~~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~~l~~VArv~LP~ 589 (609)
+.|..+|+.+++.... ...+..+.--.|- .|.-+|.+- .. ...+.|+|+.+++.|+++++|.
T Consensus 272 ~~v~v~d~~~~~~~~~-~~~~~~~~~va~s---------~DG~~l~v~--~~---d~~v~v~D~~t~~~i~~i~~p~ 333 (346)
T d1jmxb_ 272 NRLAKYDLKQRKLIKA-ANLDHTYYCVAFD---------KKGDKLYLG--GT---FNDLAVFNPDTLEKVKNIKLPG 333 (346)
T ss_dssp SEEEEEETTTTEEEEE-EECSSCCCEEEEC---------SSSSCEEEE--SB---SSEEEEEETTTTEEEEEEECSS
T ss_pred CeEEEEECCCCcEEEE-EcCCCCEEEEEEc---------CCCCEEEEE--eC---CCcEEEEECccCCEEEEEECCC
Confidence 4677789988875432 1112111111221 233344432 21 1469999999999999999984
No 8
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=21.51 E-value=31 Score=32.78 Aligned_cols=33 Identities=30% Similarity=0.319 Sum_probs=26.7
Q ss_pred EEEEEEEeCCCCceEEEEEeCCCCCeeEEEEcC
Q 007291 556 YILAFVHDEKTWKSELQIVNAMNLQLEASIKLP 588 (609)
Q Consensus 556 yLLs~V~d~~~~~SeL~VlDA~~l~~VArv~LP 588 (609)
+|++.++......+.+.|+|++++++++++.-+
T Consensus 375 ~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~ 407 (426)
T d1hzua2 375 EVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 407 (426)
T ss_dssp EEEEEECCCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred EEEEEEecCCCCCCeEEEEECCCCeEEEEECCC
Confidence 677667666667778999999999999888764
No 9
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}
Probab=21.05 E-value=2.3e+02 Score=23.95 Aligned_cols=84 Identities=13% Similarity=0.156 Sum_probs=47.0
Q ss_pred CCceEEEeeccCCCCcCcEEEEecCCCCeEEEEcCCCccCCccEeeecCCCCCCCCCCcEEEEEEEeCC-------CCce
Q 007291 497 KTQFAYLAIAEPWPKVSGFAKVDLSSGEVKKYFYGDNKYGGEPFFLPRDANNSENEDDGYILAFVHDEK-------TWKS 569 (609)
Q Consensus 497 ~~Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~~~~~~~EDDGyLLs~V~d~~-------~~~S 569 (609)
..||+|.+.... +.|..+|+.||+........ ........+.+.+-..|..+|++...+.. ....
T Consensus 44 Dg~~l~v~~~~~----~~v~v~D~~t~~~~~~~~~~----~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 115 (337)
T d1pbyb_ 44 GGRIAYATVNKS----ESLVKIDLVTGETLGRIDLS----TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT 115 (337)
T ss_dssp TSSEEEEEETTT----TEEEEEETTTCCEEEEEECC----BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCC
T ss_pred CCCEEEEEECCC----CeEEEEECCCCcEEEEEecC----CCcccccceeeEEEcCCCcEEEEeecCCcceeeecccccc
Confidence 457898765332 46899999999865322211 11112222211012246667766654321 2345
Q ss_pred EEEEEeCCCCCeeEEEEcC
Q 007291 570 ELQIVNAMNLQLEASIKLP 588 (609)
Q Consensus 570 eL~VlDA~~l~~VArv~LP 588 (609)
.+.++|..+.+.+.++..+
T Consensus 116 ~~~~~d~~~~~~~~~~~~~ 134 (337)
T d1pbyb_ 116 RVALYDAETLSRRKAFEAP 134 (337)
T ss_dssp EEEEEETTTTEEEEEEECC
T ss_pred ceeeccccCCeEEEecccc
Confidence 7788898888877777655
No 10
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}
Probab=19.06 E-value=96 Score=30.64 Aligned_cols=82 Identities=6% Similarity=0.060 Sum_probs=47.2
Q ss_pred CceEEEeeccCCCCcCcEEEEecCCCCeEE-EEcCCCccCCccEeeecCCCCCCCCCCcEEEEEE------------EeC
Q 007291 498 TQFAYLAIAEPWPKVSGFAKVDLSSGEVKK-YFYGDNKYGGEPFFLPRDANNSENEDDGYILAFV------------HDE 564 (609)
Q Consensus 498 ~Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~-~~~g~g~~~gEPvFVPr~~~~~~~EDDGyLLs~V------------~d~ 564 (609)
-||.|.+... -+.|.++|++|+++.. -..+.+.-+.--.|.|.+ --.|+++.- .+.
T Consensus 83 Gr~lfV~d~~----~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg-------~t~YV~~~~~~~v~~~~dg~~~~~ 151 (441)
T d1qnia2 83 GKYLFINDKA----NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVP-------KTNYVFCNAEFVIPQPNDGTDFSL 151 (441)
T ss_dssp EEEEEEEETT----TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSS-------BCCEEEEEECSCEESSCSSSCCCG
T ss_pred CCEEEEEcCC----CCEEEEEECCCCcEeeEEecCCCCCccceEEeccC-------CEEEEEeccCCcccccCccccccc
Confidence 5788876532 2689999999997554 333322211111333332 123443321 122
Q ss_pred CCCceEEEEEeCCCCCeeEEEEcCCc
Q 007291 565 KTWKSELQIVNAMNLQLEASIKLPSR 590 (609)
Q Consensus 565 ~~~~SeL~VlDA~~l~~VArv~LP~r 590 (609)
....+.+.++|+.+|+.++++.++..
T Consensus 152 ~~~~~~~~~iD~~t~~v~~qI~v~~~ 177 (441)
T d1qnia2 152 DNSYTMFTAIDAETMDVAWQVIVDGN 177 (441)
T ss_dssp GGEEEEEEEEETTTCSEEEEEEESSC
T ss_pred ccccceEEeecCccceeeEEEecCCC
Confidence 22335677899999999999988754
Done!