BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007292
         (609 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2OVJ|A Chain A, The Crystal Structure Of The Human Rac Gtpase Activating
           Protein 1 (Racgap1) Mgcracgap
          Length = 201

 Score = 32.0 bits (71), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/165 (20%), Positives = 69/165 (41%), Gaps = 12/165 (7%)

Query: 34  MKADYIARQQANDSQLSTMVAEQIEQ---AQTGLESLALSEQMISQLRENFISIERYCQE 90
           M AD++++       +      +IEQ    +TGL  ++  ++ + +L+E F+ ++     
Sbjct: 5   MLADFVSQTSPMIPSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTV--- 61

Query: 91  CQTLIENHDQIKLLSNARNNLSTTLKDVEGMMSISVEAA--EAKDSLGDDKELINTYERL 148
              L+   D I  + +   +    LK  E +++  +  A  EA +   +D  +   Y+ +
Sbjct: 62  --PLLSKVDDIHAICSLLKDFLRNLK--EPLLTFRLNRAFMEAAEITDEDNSIAAMYQAV 117

Query: 149 TALDGKRRFALAAAESHKEEVGRLREYFEDVDQIWETFEKTLWGY 193
             L    R  LA    H + V +      DV  + + F  T+  +
Sbjct: 118 GELPQANRDTLAFLMIHLQRVAQSPHTKMDVANLAKVFGPTIVAH 162


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,375,628
Number of Sequences: 62578
Number of extensions: 513501
Number of successful extensions: 1471
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1471
Number of HSP's gapped (non-prelim): 2
length of query: 609
length of database: 14,973,337
effective HSP length: 105
effective length of query: 504
effective length of database: 8,402,647
effective search space: 4234934088
effective search space used: 4234934088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)