BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007292
(609 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54BP6|EXOC3_DICDI Exocyst complex component 3 OS=Dictyostelium discoideum GN=exoc3
PE=3 SV=1
Length = 783
Score = 169 bits (428), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 139/584 (23%), Positives = 271/584 (46%), Gaps = 43/584 (7%)
Query: 10 AKEAAVREVAKLLTLPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLAL 69
A+ AA++++ + + D L + + K I +++ ++Q+ V ++E+++ GLE+L
Sbjct: 17 AQSAAIKKIEQNFSNIDSLASVTNHKISLIQQKKTIEAQIKNEVHSELEKSKKGLETLYK 76
Query: 70 SEQMISQLRENFISIERYCQECQTLIENHDQIKLLSNARNNLSTTLKDVEGMMSISVEAA 129
S I+++ E+F C E LI ++ IK ++ R NL LK+V+ +++I +AA
Sbjct: 77 SYNRINRMDESFSDTVELCSETSNLIGHYQLIKKVNTVRVNLINILKEVDRLLTIPEKAA 136
Query: 130 EAKDSLGDDKELINTYERLTALDGKRRFALAAAESHKEEVGRLREYFEDVDQIWETFEKT 189
E + L DD L+ + +L L+ + AL ES+ EE+ ++E F V ++ FE
Sbjct: 137 EIEQLLSDDLNLLEIHSKLRELERLHQKALKQFESNFEELEAIKEMFSSVPELSHRFENK 196
Query: 190 LWGYISNFYKLSKESPQTLVRALRVVEMQEILDQQLAEEAAEAEGGGVMAAISNPRRSAK 249
+W +SN +++ P LV+ +++E +++ +Q+ E+ ++ ++++
Sbjct: 197 IWNIVSNSIDIAQIKPAVLVKVAQIIEREKLHEQKQKEKKSQ---NSLISSEGIHDDDDD 253
Query: 250 KSTTATISSNS----------HTQQKLKVQGKGYKDKCYEQIRKAVERRFNKLLTELV-- 297
T +NS + +D+ Y++ R RF ++L + +
Sbjct: 254 DDDTEVNLNNSNKQQNNENENSSSNNNNNYDINNEDEGYDRNRSNYGDRFLEVLIQSISG 313
Query: 298 -FE--------DLKAALEEARTIGEELADIYDYVAPCFPPRYEIFQLMVNLYTERFIQML 348
FE DL L++ + +EL + D V C+PP Y++F V+ Y +F +
Sbjct: 314 KFEPMFLNSHNDLVQTLKDVNKMVDELFIVMDIVQECYPPSYDLFNFYVDQYHTKFYSLF 373
Query: 349 RLLSDR--------------ANELTNIEILKVTGWVVE-YQDNLIGLGVDESLAQVCSES 393
S+ + + IL + WVV+ Y +L LG+ + +
Sbjct: 374 GSFSNLMESSHVNNNYQVVVTKNIPSAHILMLVEWVVKNYSRDLSRLGIQDISPPLL--- 430
Query: 394 GAMDPLMNSYVERMQATTKKWYLNILDADKVQPPKRTEDGKLYTPAAVDLFRILGEQVQI 453
++DPL+ Y ++ ++W NI++ D P+ DG+ + A + LF + Q+ I
Sbjct: 431 DSLDPLIKIYKMHIKQLMREWCDNIINNDNQNKPEVV-DGQYCSLAPIQLFESVASQLDI 489
Query: 454 VRENSTDIMLYRIALAIIQVMIDFQAAERERLAEPAPEIGLEPLCAMINNNLRCYDLAME 513
++ + ++ ++ FQ L E EI LE + A +NNN +CYD
Sbjct: 490 AAATKCQKLVVGVMEEVVSALMYFQVQSITLLQERNHEIKLENVIAYVNNNSKCYDHTQT 549
Query: 514 LSTSTMEALPPNYAEQVNFEDACKGFLEVTKEAVRHTLNVIFED 557
+ L + ++F+ +GFL V+K A + +VIF D
Sbjct: 550 IVDKVSNILDSEHMGYLDFDPVLEGFLNVSKVATQAISSVIFRD 593
>sp|Q19262|EXOC3_CAEEL Exocyst complex component 3 OS=Caenorhabditis elegans GN=sec-6 PE=3
SV=2
Length = 796
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 112/496 (22%), Positives = 215/496 (43%), Gaps = 64/496 (12%)
Query: 6 LGVEAKEAAVREVAKLLTLPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLE 65
+ V+ +EAA+ +VA LL PDQL+ + ++K ++ A ++ L T V Q+E +T +
Sbjct: 1 MDVDVEEAALEQVAALLQRPDQLEKLPELKKRADRKKLAVEAMLRTGVQGQLEGIRTAIA 60
Query: 66 SLALSEQMISQLRENFISIERYCQECQTLIENHDQIKLLSNARNNLSTTLKDVEGMMSIS 125
L + I+ + + I L E +++ + + +++++ + ++
Sbjct: 61 HLQTASDDITAISQGVHDIRERLGPFPQLKEKLRELRDANARHGQYAAAMENLKHIFNLQ 120
Query: 126 VEAAEAKDSLGDDKE---LINTYERLTALDGKRRFALAAAESHK-------EEVGRLREY 175
E +D+L D+K L+ ++ + L+ R L AE HK +E L +
Sbjct: 121 TTLQEIRDALDDEKSGGNLLLAHKHIMDLERARDELL--AEVHKMSGTNTEKEQMLLVNF 178
Query: 176 FEDVDQIWETFEKTLWGYISNFYKLSKES-----PQTLVRALRVVEMQEILDQQLAEEAA 230
F+ VD + K +W + ++ K + PQ +V LR+VE +E +D+ E A
Sbjct: 179 FKGVDSVVAELSKNMWFILGRTLEMVKGNEQGGGPQQVVTCLRIVEREERIDKFYME--A 236
Query: 231 EAEGGGVMAAISNPRR---SAKKSTTATISSNSHTQQKLKVQGKGYKDKCYEQIRKAVER 287
++ PR A +S T+S+ +V G +D+ + KA
Sbjct: 237 RSKNSSAFVPPGRPRNWKEKALRSLEKTVSN--------RVDGNQLEDRS---LNKAWLA 285
Query: 288 RFNKLLTELVFEDLKAALEEARTIGEELADIYDYVAPCFPPRYEIFQLMVNLYTERFIQM 347
R+ ++ ++ +DL+ A PCFPP ++I+ V++Y +
Sbjct: 286 RYLEVCKNVIMDDLQLA---------------KVAIPCFPPDWQIYDRYVHMYHTSVCRR 330
Query: 348 LRLLSDRANELTNIEILKVTGWVVEY-QDNLIGLGVDESLAQ-------VCSESGAMDPL 399
LR ++ + L E++++ W+ Y ++++G AQ V S S ++ L
Sbjct: 331 LREVA--SEHLEKSELVQLMSWIKFYASEDMLGHPKLRINAQAILQDSPVLSRS-TLNQL 387
Query: 400 MNSYVERMQATTKKWYLNIL-----DADKVQPPKRTEDGKLYTPAAVDLFRILGEQVQIV 454
+ +VE + K W N + D K P G YT +F +L + V +
Sbjct: 388 CDQFVEMSRDDLKLWLKNTVSHETHDWYKNLRPSEDNHGYFYTDLPNTVFGMLKDTVTLA 447
Query: 455 RENSTDIMLYRIALAI 470
+E S +++ I L I
Sbjct: 448 KEVSVEVIPSIINLTI 463
>sp|Q0V8C2|EXOC3_BOVIN Exocyst complex component 3 OS=Bos taurus GN=EXOC3 PE=2 SV=1
Length = 745
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 97/483 (20%), Positives = 206/483 (42%), Gaps = 49/483 (10%)
Query: 9 EAKEAAVREVAKLLTLPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLA 68
EA AV+ VA +L PDQL + + ++ + +++L + Q++ +TGL L
Sbjct: 7 EAVATAVQRVAGMLQRPDQLDKVEQYRRREARKKASVEARLKAAIQSQLDGVRTGLSQLH 66
Query: 69 LSEQMISQLRENFISIERYCQECQTLIENHDQIKLLSNARNNLSTTLKDVEGMMSISVEA 128
+ + ++++ + + ++ IE+ +K + L+ +++++ + S+
Sbjct: 67 NALNDVKDIQQSLADVSKDWRQSINTIESLKDVKDAVVRHSQLAAAVENLKNIFSVPEIV 126
Query: 129 AEAKDSLGDDKELINTYERLTALDGKRRFALAAAESHKEEVGRLRE------YFEDVDQI 182
E +D L + EL+ + +L L+ R + E ++ + G R+ YF +
Sbjct: 127 RETQD-LIEHGELLQAHRKLMDLECSRDGLM--YEQYRMDSGNTRDMTLIHSYFGSTQGL 183
Query: 183 WETFEKTLWGYISNFYKLSKESPQTLVRALRVVEMQEILDQQLAEEAAEAEGGGVMAAIS 242
+ K LW + + P LV +R++E +E +D+++ + + +
Sbjct: 184 SDELAKQLWMVLQRSLVTVRRDPTLLVSVVRIIEREEKIDRRILDRKKQT------GFVP 237
Query: 243 NPRRSAKKSTTATISSNSHTQQKLKVQGKGYKDKCYEQIRKAVERRFNKLLTELVFEDLK 302
R K TI + T + +G + E R + R +++ + V +DL
Sbjct: 238 PGRPKNWKEKMFTILDRTVT-----TRIEGTQADTRESDRMWLVRHL-EIIRKYVLDDLI 291
Query: 303 AALEEARTIGEELADIYDYVAPCFPPRYEIFQLMVNLYTERFIQMLRLLSDRANELTNIE 362
A + +A CFPP YEIF+ ++ Y + ++ L+ A +L E
Sbjct: 292 VA--------------KNLLAQCFPPHYEIFRSLLRTYHQALSARMQDLA--AEDLEANE 335
Query: 363 ILKVTGWVVEYQDNLIGLG-------VDESLAQVCSESGAMDPLMNSYVERMQATTKKWY 415
I+ + WV+ ++ +G VD +L + + + L+++Y+ + + W
Sbjct: 336 IVSLLTWVLNTYTSVEMMGNAELAPEVDVALLEPLLSADVVSALLDTYMSTLTSNIIAWL 395
Query: 416 LNILDADKVQPPKRTE-----DGKLYTPAAVDLFRILGEQVQIVRENSTDIMLYRIALAI 470
L+ DK K TE DG T +F++ + +Q+ + S D+ + L +
Sbjct: 396 RKALETDKKDWMKETEPEADQDGYYQTTLPAIVFQMFEQNLQVAAQISEDLKTKVLVLCL 455
Query: 471 IQV 473
Q+
Sbjct: 456 QQM 458
>sp|Q9V8K2|EXOC3_DROME Exocyst complex component 3 OS=Drosophila melanogaster GN=sec6 PE=2
SV=2
Length = 738
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 102/482 (21%), Positives = 207/482 (42%), Gaps = 45/482 (9%)
Query: 9 EAKEAAVREVAKLLTLPDQLQFIGDMKADYIARQQAN-DSQLSTMVAEQIEQAQTGLESL 67
+A++AA++++ +L P QL+ + + IAR++A+ ++ L T + Q++ + GL+ L
Sbjct: 9 QARQAALKDIQNMLQRPGQLEKVEQYR-HRIARKKASVEALLKTGMQGQLDGVRVGLKQL 67
Query: 68 ALSEQMISQLRENFISIERYCQECQTLIENHDQIKLLSNARNNLSTTLKDVEGMMSISVE 127
Q + ++R +ER + + + + ++ + + +T +++++ + ++
Sbjct: 68 ETCMQDVREVRRRMDEVERLLRGVPEVYDALEVVREENTKHSQYATAMENLKHIFNVDAS 127
Query: 128 AAEAKDSLGDDKELINTYERLTALDGKRRFAL----AAAESHKEEVGRLREYFEDVDQIW 183
+ + DDK L+N ++ L L+ R L + H + L+ +FE VD +
Sbjct: 128 VQKTMALIEDDK-LLNAHQCLADLENSRDDLLYELHKQPKQHASDKITLKRHFEKVDTVS 186
Query: 184 ETFEKTLWGYISNFYKLSKESPQTLVRALRVVEMQEILDQQLAEEAAEAEGGGVMAAISN 243
+ EK L +S ++ P +V ALR++E +E DQ ++ V +
Sbjct: 187 QELEKKLRLILSRTLNTLRKKPTIIVTALRIIEREEKNDQFALQQQ------KVTGFLPP 240
Query: 244 PRRSAKKSTTATISSNSHTQQKLKVQGKGYKDKCYEQIRKAVERRFNKLLTELVFEDLKA 303
R A + + QQ + + +G K ER NK+ E L+
Sbjct: 241 GRPKAWRRMIMDV-----LQQSVITRIEG---------SKLEERADNKMWLVRDLEILR- 285
Query: 304 ALEEARTIGEELADIYDYVAPCFPPRYEIFQLMVNLYTERFIQMLRLLSDRANELTNIEI 363
+ I E+L + PCFPP Y+IF V Y E L + L E
Sbjct: 286 -----QIILEDLRVVKSLCVPCFPPHYDIFGEYVKFYHEGLSSYLDNIVRSG--LEGNEY 338
Query: 364 LKVTGWVVEYQDNLIGLGVDESLAQVCSESGA------MDPLMNSYVERMQATTKKWYLN 417
+ + WV + + + V + G + L + Y++ MQ ++W
Sbjct: 339 VSMMAWVTHTYPGVELMSHPDLNVDVHRQIGTLLRPEHLKALEDEYLQNMQRNFQEWMTK 398
Query: 418 ILDADKVQPPKRT---EDGKLY-TPAAVDLFRILGEQVQIVRENSTDIMLYRIALAIIQV 473
+ +K + T +D + Y T A V +F+++ + +Q+ ++ + ++I QV
Sbjct: 399 AAETEKQEWFTETVPDQDEEYYHTSAPVIIFQMIDQHLQVTNTIHQELTFKALVMSIQQV 458
Query: 474 MI 475
I
Sbjct: 459 EI 460
>sp|Q62825|EXOC3_RAT Exocyst complex component 3 OS=Rattus norvegicus GN=Exoc3 PE=1 SV=1
Length = 755
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 122/599 (20%), Positives = 250/599 (41%), Gaps = 80/599 (13%)
Query: 8 VEAKEAAVREVAKLLTLPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESL 67
+EA AV+ VA +L PDQL + + ++ + +++L + Q++ +TGL L
Sbjct: 16 LEAVATAVQRVAGMLQRPDQLDKVEQYRRREARKKASVEARLKAAIQSQLDGVRTGLSQL 75
Query: 68 ALSEQMISQLRENFISIERYCQECQTLIENHDQIKLLSNARNNLSTTLKDVEGMMSISVE 127
+ + ++++ + + ++ IE+ +K + L+ +++++ + S+
Sbjct: 76 HNALNDVKDIQQSLADVSKDWRQSINTIESLKDVKDAVVQHSQLAAAVENLKNIFSVPEI 135
Query: 128 AAEAKDSLGDDKELINTYERLTALDGKRRFALAAAESHKEEVGRLRE------YFEDVDQ 181
E +D L + L+ + +L L+ R + E ++ + G R+ YF
Sbjct: 136 VRETQD-LIEQGALLQAHRKLMDLECSRDGLM--CEQYRMDSGNKRDMTLIHGYFGSTQG 192
Query: 182 IWETFEKTLWGYISNFYKLSKESPQTLVRALRVVEMQEILDQQLAEEAAEAEGGGVMAAI 241
+ + K LW + + P LV +R++E +E +D+++ +
Sbjct: 193 LSDELAKQLWMVLQRSLVTVRRDPTLLVSVVRIIEREEKIDRRILD-------------- 238
Query: 242 SNPRRSAKKSTTATISSNSHTQQKLKVQGKGYKDKCYEQIRKAVERRFNKLLTELVFED- 300
+K T + + K +K+K + + + V R + D
Sbjct: 239 -------RKKQTGFVPPG---------RPKNWKEKMFAVLDRTVTTRIEGTQADTRESDK 282
Query: 301 --LKAALEEART-IGEELADIYDYVAPCFPPRYEIFQLMVNLYTERF-IQMLRLLSDRAN 356
L LE R + ++L + + CFPP Y+IF+ ++++Y + I+M L S+
Sbjct: 283 MWLVRHLEIIRKYVLDDLVIAKNLLVQCFPPHYDIFKNLLSMYHQALSIRMQDLASE--- 339
Query: 357 ELTNIEILKVTGWVVEYQDNLIGLGVDESLAQVCSESGAMDP---------LMNSYVERM 407
+L EI+ + WV+ + +G E +V + A++P L+++Y+ +
Sbjct: 340 DLEANEIVSLLTWVLNTYTSAEMMGNVELAPEV--DVNALEPLLSPNVVSELLDTYMSTL 397
Query: 408 QATTKKWYLNILDADKVQPPKRTE-----DGKLYTPAAVDLFRILGEQVQIVRENSTDIM 462
+ W L+ DK K TE DG T +F++ + +Q+ + S D+
Sbjct: 398 TSNIIAWLRKALETDKKDWSKETEPEADQDGYYQTTLPAIVFQMFEQNLQVAAQISEDLK 457
Query: 463 LYRIALAIIQVMIDF--------QAAERERLA-EPAPEIGLEPLCAMINNNLRCYDLAME 513
++ + +Q M F Q + E L P ++ + A+INN C
Sbjct: 458 T-KVLVLCLQQMNSFLSRYKEEAQLYKEEHLRNRQHPHCYVQYMVAIINN---CQTFKES 513
Query: 514 LSTSTMEALPPNYAEQV-NFEDACKGFLE-VTKEAVRHTLNVIFEDPGVEQLLVKLYQK 570
+ + + L P E + + + G L+ + KE L +F D +EQ L +L K
Sbjct: 514 IISLKRKYLKPETEESLCQSQPSMDGILDAIAKEGCSSLLEEVFLD--LEQHLNELMTK 570
>sp|Q6KAR6|EXOC3_MOUSE Exocyst complex component 3 OS=Mus musculus GN=Exoc3 PE=1 SV=2
Length = 755
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 94/488 (19%), Positives = 204/488 (41%), Gaps = 57/488 (11%)
Query: 8 VEAKEAAVREVAKLLTLPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESL 67
+EA AV+ VA +L PDQL + + ++ + +++L + Q++ +TGL L
Sbjct: 16 LEAVATAVQRVAGMLQRPDQLDKVEQYRRREARKKASVEARLKAAIQSQLDGVRTGLSQL 75
Query: 68 ALSEQMISQLRENFISIERYCQECQTLIENHDQIKLLSNARNNLSTTLKDVEGMMSISVE 127
+ + ++++ + + ++ IE+ +K + L+ +++++ + S+
Sbjct: 76 HNALNDVKDIQQSLADVSKDWRQSINTIESLKDVKDAVVQHSQLAAAVENLKNIFSVPEI 135
Query: 128 AAEAKDSLGDDKELINTYERLTALDGKRRFALAAAESHKEEVGRLRE------YFEDVDQ 181
E +D L + L+ + +L L+ R + E ++ + G R+ YF
Sbjct: 136 VRETQD-LIEQGALLQAHRKLMDLECSRDGLM--CEQYRMDSGNKRDMTLIHGYFGSTQG 192
Query: 182 IWETFEKTLWGYISNFYKLSKESPQTLVRALRVVEMQEILDQQLAEEAAEAEGGGVMAAI 241
+ + K LW + + P LV +R++E +E +D+++ +
Sbjct: 193 LSDELAKQLWMVLQRSLVTVRRDPTLLVSVVRIIEREEKIDRRILD-------------- 238
Query: 242 SNPRRSAKKSTTATISSNSHTQQKLKVQGKGYKDKCYEQIRKAVERRFNKLLTELVFED- 300
+K T + + K +K+K + + + V R + D
Sbjct: 239 -------RKKQTGFVPPG---------RPKNWKEKMFAILDRTVTTRIEGTQADTRESDK 282
Query: 301 --LKAALEEART-IGEELADIYDYVAPCFPPRYEIFQLMVNLYTERFIQMLRLLSDRANE 357
L LE R + ++L + + CFPP YEIF+ ++++Y + ++ L+ + +
Sbjct: 283 MWLVRHLEIIRKYVLDDLIVAKNLMVQCFPPHYEIFKNLLSMYHQALSTRMQDLA--SED 340
Query: 358 LTNIEILKVTGWVVEYQDNLIGLG-------VDESLAQVCSESGAMDPLMNSYVERMQAT 410
L EI+ + WV+ + +G VD S + + L+++Y+ + +
Sbjct: 341 LEANEIVSLLTWVLNTYTSAEMMGNVELAPEVDVSALEPLLSPNIVSELLDTYMSTLTSN 400
Query: 411 TKKWYLNILDADKVQPPKRTE-----DGKLYTPAAVDLFRILGEQVQIVRENSTDIMLYR 465
W L+ DK K TE DG T +F++ + +Q+ + S D+
Sbjct: 401 IIAWLRKALETDKKDWSKETEPEADQDGYYQTTLPAIVFQMFEQNLQVAAQISEDLKTKV 460
Query: 466 IALAIIQV 473
+ L + Q+
Sbjct: 461 LVLCLQQM 468
>sp|O60645|EXOC3_HUMAN Exocyst complex component 3 OS=Homo sapiens GN=EXOC3 PE=1 SV=2
Length = 756
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 99/487 (20%), Positives = 206/487 (42%), Gaps = 57/487 (11%)
Query: 9 EAKEAAVREVAKLLTLPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLA 68
EA AV+ VA +L PDQL + + ++ + +++L + Q++ +TGL L
Sbjct: 18 EAVATAVQRVAGMLQRPDQLDKVEQYRRREARKKASVEARLKAAIQSQLDGVRTGLSQLH 77
Query: 69 LSEQMISQLRENFISIERYCQECQTLIENHDQIKLLSNARNNLSTTLKDVEGMMSISVEA 128
+ + ++++ + + ++ IE+ +K + L+ +++++ + S+
Sbjct: 78 NALNDVKDIQQSLADVSKDWRQSINTIESLKDVKDAVVQHSQLAAAVENLKNIFSVPEIV 137
Query: 129 AEAKDSLGDDKELINTYERLTALDGKRRFALAAAESHKEEVGRLRE------YFEDVDQI 182
E +D L + L+ + +L L+ R + E ++ + G R+ YF +
Sbjct: 138 RETQD-LIEQGALLQAHRKLMDLECSRDGLM--YEQYRMDSGNTRDMTLIHGYFGSTQGL 194
Query: 183 WETFEKTLWGYISNFYKLSKESPQTLVRALRVVEMQEILDQQLAEEAAEAEGGGVMAAIS 242
+ K LW + + P LV +R++E +E +D+++ + + + G V
Sbjct: 195 SDELAKQLWMVLQRSLVTVRRDPTLLVSVVRIIEREEKIDRRILDR--KKQTGFVPPG-- 250
Query: 243 NPRRSAKKSTTA---TISSN-SHTQQKLKVQGKGYKDKCYEQIRKAVERRFNKLLTELVF 298
P+ +K T T+++ TQ + K + + E IRK V
Sbjct: 251 RPKNWKEKMFTILERTVTTRIEGTQADTRESDKMWLVRHLEIIRK------------YVL 298
Query: 299 EDLKAALEEARTIGEELADIYDYVAPCFPPRYEIFQLMVNLYTERFIQMLRLLSDRANEL 358
+DL A + + CFPP YEIF+ ++N+Y + ++ L+ + +L
Sbjct: 299 DDLIVA--------------KNLMVQCFPPHYEIFKNLLNMYHQALSTRMQDLA--SEDL 342
Query: 359 TNIEILKVTGWVV------EYQDNL-IGLGVDESLAQVCSESGAMDPLMNSYVERMQATT 411
EI+ + WV+ E N+ + VD + + L+++Y+ + +
Sbjct: 343 EANEIVSLLTWVLNTYTSTEMMRNVELAPEVDVGTLEPLLSPHVVSELLDTYMSTLTSNI 402
Query: 412 KKWYLNILDADKVQPPKRTE-----DGKLYTPAAVDLFRILGEQVQIVRENSTDIMLYRI 466
W L+ DK K TE DG T +F++ + +Q+ + S D+ +
Sbjct: 403 IAWLRKALETDKKDWVKETEPEADQDGYYQTTLPAIVFQMFEQNLQVAAQISEDLKTKVL 462
Query: 467 ALAIIQV 473
L + Q+
Sbjct: 463 VLCLQQM 469
>sp|A2AV37|EX3L1_DANRE Exocyst complex component 3-like protein OS=Danio rerio GN=exoc3l1
PE=2 SV=1
Length = 780
Score = 72.8 bits (177), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 95/491 (19%), Positives = 197/491 (40%), Gaps = 67/491 (13%)
Query: 10 AKEAAVREVAKLLTLPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLAL 69
A+ AA++ + + P+ L+ +G K R + S+L ++V +E GL L
Sbjct: 32 ARGAALKWASGVFCRPEHLEKLGQYKKRESQRTASIQSRLKSVVQSYLEGVDWGLGQLRE 91
Query: 70 SEQMISQLRENFISIERYCQECQTLIENHDQIKLLSNARNNLSTTLKDVEGMMSISVEAA 129
+ + + + ++ + + ++ +S + L + ++ + +
Sbjct: 92 ARAELRGVSHDLYKANLESRKNSEEVTTLETLREISVSHCQLLAAVSNLPRLYKVRSMVL 151
Query: 130 EAKDSLGDDKELINTYERLTALD-----------GKRRFALAAAESHKEEVGRLREYFED 178
E + L + + L+ + RL L+ G R + S EE+ +R YF
Sbjct: 152 ET-ERLVESRRLLEAHARLMELERWQDEVLLQLQGPRGSSGTELNSEDEEL--VRNYFSG 208
Query: 179 VDQIWETFEKTLWGYISNFYKLSKESPQTLVRALRVVEMQEILDQQLAEEAAEAEGGGVM 238
V ++ + K LW + + L+ ++P V A+R+VE +E LDQ EE G +
Sbjct: 209 VGRLVDALAKELWAVVGSGLSLAHQNPTPFVSAVRIVEREEALDQFFLEERRSTSGHNIP 268
Query: 239 AAISNPRRSAKKSTTATISSNSHTQQKLKVQGKGYKDKCYEQIRKAVERRFNKL-LTELV 297
PR ++D+ ++ + +AV RF +
Sbjct: 269 MPAGRPR--------------------------NWRDRFFKVMEEAVSARFRSVSYLHTR 302
Query: 298 FEDLKAALEE-ARTIGEELADIYDYVAPCFPPRYEIFQLMVNLYTERFIQM-LRLLSDRA 355
L + L I +L+ + + C P Y + + ++ + +F+Q L L+S
Sbjct: 303 GPGLASHLSALQHCIMGDLSTVRHCLEQCVPAHYHLTRAYLH-FCHQFLQTHLGLVS--G 359
Query: 356 NELTNIEILKVTGWVVEYQDNLIGLGVD--------ESLAQVCSESGAMDPLMNSYVERM 407
EL EI V WV+ ++ +G E+L + S+ G ++ L N YV+++
Sbjct: 360 WELEGGEIFAVLNWVLHIYNSSEMMGEPALLAELEIENLGPLISQEG-LEQLQNKYVQKV 418
Query: 408 QATTKKWY-----LNILDADKVQPPKRTEDGKLYTPAAVDLFRILGEQVQI-------VR 455
+ + +W + + D + Q P +G +T + ++L E ++ +R
Sbjct: 419 RKSVSEWMQKALEVELTDWQRDQEPDIDHEGYYHTSLPTIITQMLEENARVALMISEALR 478
Query: 456 ENSTDIMLYRI 466
+ + + LY +
Sbjct: 479 DQTIQMGLYEM 489
>sp|Q86VI1|EX3L1_HUMAN Exocyst complex component 3-like protein OS=Homo sapiens GN=EXOC3L1
PE=2 SV=2
Length = 746
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 104/478 (21%), Positives = 189/478 (39%), Gaps = 102/478 (21%)
Query: 10 AKEAAVREVAKLLTLPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLAL 69
A+ AA++ + + P+QL +G ++ + R + +S+L +++ +E QTG+ LA
Sbjct: 29 ARGAALKWASGIFYRPEQLARLGQYRSREVQRTCSLESRLKSVMQSYLEGVQTGVWQLAQ 88
Query: 70 SEQMISQLRENFIS----IERYCQECQTL------IENHDQIKLLSNARNNLSTTLKDVE 119
+ +++ RE ++ Q QTL + H Q++ LS +L L+ V
Sbjct: 89 AIEVVQGTREALSQARGLLQGMSQALQTLEPLRERVAQHKQLQALS----HLLPRLRAVP 144
Query: 120 GMMSISVEAAEAKDSLGDDKELINTYERLTALDGKRRFALAAAESHKEEVGRLR-EYFED 178
+S + +L D ++ + Y L L+ R E +G L F+
Sbjct: 145 AAVSHT-------QTLIDGQQFLEAYVSLRELEQLR-------EDTWAPLGGLELPVFQG 190
Query: 179 VDQIWETFEKTLWGYISNFYKLSKESPQTLVRALRVVEMQEILDQQLAEEAAEAEGGGVM 238
+D ++E + + KL++E P LV A+RV AE E G
Sbjct: 191 LDLLFEALGQAVEAAAGAAGKLAREDPALLVAAVRV---------------AEVETGRTT 235
Query: 239 AAISNPRRSAKKSTTATISSNSHTQQKLKVQGKGYKDKCYEQIRKAVER-RFNKLLTELV 297
PR ++ +C +++ +E+ F L
Sbjct: 236 PLGQVPR--------------------------DWRQRCLRALQEGLEQAHFGSPLLP-A 268
Query: 298 FEDLKAALEEAR-TIGEELADIYDYVAPCFPPRYEIFQLMVN-LYTERFIQMLRLLSDRA 355
L LE R + ELA VAPC PP+Y + QL + L++ + LL+
Sbjct: 269 PGALPGWLEALRVALPVELATAEALVAPCCPPQYNVVQLWAHTLHSGLRRSLQNLLA--G 326
Query: 356 NELTNIEILKVTGWV--VEYQDNLIG---LGVDESLAQVCSESGAMDPLMN--------- 401
EL + + W V ++G LG + ++Q ++PL+
Sbjct: 327 PELEAADAFALLHWALHVYLGQEMMGSLELGPEADVSQ-------LEPLLTLENIEQLEA 379
Query: 402 SYVERMQATTKKWYLNILDAD-----KVQPPKRTEDGKLYTPAAVDLFRILGEQVQIV 454
++V +QA+ +W N LD + + P G Y+P + +IL E +++
Sbjct: 380 TFVANIQASVSQWLQNALDGEVAEWGREHGPNTDPSGSYYSPMPAIVLQILEENIRVA 437
>sp|O74846|SEC6_SCHPO Exocyst complex component sec6 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=sec6 PE=1 SV=2
Length = 752
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 113/597 (18%), Positives = 240/597 (40%), Gaps = 88/597 (14%)
Query: 41 RQQAN-DSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLIENHD 99
R+QA+ + + T + + +E + G +L ++ +L + ++ C+ + +++
Sbjct: 36 REQASLNMHVKTELEKHVEAVELGKLALHDAQTKRVKLLQELHNMLTLCESAREMVDEFP 95
Query: 100 QIKLLSNARNNLSTTLKDVEGMMSISVEAAEAKDSLGDDKEL-------INTYERLTALD 152
I +S N T + + + ++ E +D L +D EL + + +L+ L
Sbjct: 96 LISRMSRIYKNCYATKQMISQLNNLVKETDVIEDMLREDLELDSDMPNLLRAHYKLSKLR 155
Query: 153 GKRRFAL--AAAESHKEEVGRLREYFEDVDQIWETFEKTLWGYISNFYKLSKESP-QTLV 209
R AL A+ E + L F +++ + + F++ + + N ++L K +T+V
Sbjct: 156 EFREEALYQASLEGQSDLPITLENSFSNLNTLSDNFDRLVLNFCRNIFQLVKSGHIKTIV 215
Query: 210 RALRVVEMQEILDQQLAEEAAEAEGGGVMAAISNPRRSAKKSTTATISSNSHTQQKLKVQ 269
+ ++VE +E D+ V+ +I R AK S + + Q + Q
Sbjct: 216 QIFKIVEAEESSDE-------------VLKSI----RDAKSSLPDSQDGPFLSLQGMTRQ 258
Query: 270 GKGYKDKCYEQIRKAVERRFNK------------LLTELVFEDLKAALEEARTIGEELAD 317
+ ++ + E+ + A F + L + +FEDLK A
Sbjct: 259 LRNFRLRVLEEFQGAAAENFQRAWVSYLEDGSGELNLDFIFEDLKVAF------------ 306
Query: 318 IYDYVAPCF-PPRYEIFQLMVNLYTERFIQML-RLLSDRANELTNIEILKVTGWVVEYQD 375
YV P PP Y I + ++Y E + ++ + +S + ++ ++ +
Sbjct: 307 ---YVLPDLTPPSYNIAKTFASIYQECLVGLVTKAVSLDTPAAVYLYLINFHREYRKFFE 363
Query: 376 NLIGLGVDESLAQVCSESGAMDPLMNSYVERMQATTKKWYLNILDAD------KVQPPKR 429
VDE + E G L+ Y ++W + + + P+
Sbjct: 364 ENAPFSVDE--VEPGLEDGKDGILVREYTRLFTQKIREWSDKLFQSSVDTFMKRESEPEL 421
Query: 430 TEDGKLYTPAAVDLFRILGEQVQIVRE-NSTDI--MLYRIALAIIQVMID-FQAAERERL 485
DG + F+++ +Q+ I+ N++D+ ++ + I+Q M D +++ R L
Sbjct: 422 DSDGNYGLQGTIIFFQMITQQINIISHTNNSDVVGIVLSSIMYIMQSMQDQWKSVMRSEL 481
Query: 486 A-------EPAPEIGLEPLCAMINNNLRCYDLAMELSTSTMEALPPNYAEQVN--FEDAC 536
+ E P +E L A+ N+NL+C +T E + E + F
Sbjct: 482 SQQLSGNPESVPPGLMEYLLAVANDNLKCAGFMDNTLLNTFELITSEREEDLREAFGKTV 541
Query: 537 KGFLEVTKEAVRHTLNVIFEDPGVEQLLVKLYQKG-------KSLLKSFTSFLFLDC 586
G++ ++ V + +I D V+ L L+Q K ++ +F ++ +DC
Sbjct: 542 DGYILISDIGVSQIVAIISND--VKPALTSLFQPNWYQSSNMKLIVDTFRDYI-VDC 595
>sp|P32844|SEC6_YEAST Exocyst complex component SEC6 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SEC6 PE=1 SV=2
Length = 805
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/320 (20%), Positives = 132/320 (41%), Gaps = 36/320 (11%)
Query: 271 KGYKDKCYEQIRKAVERRFNKLLTELVFEDLKAALEEARTIGEELADIYDYVAPCFPPRY 330
+GYK I ++ F ++ + V + L+ I EL + +++A C PP +
Sbjct: 291 RGYKHFLINGINNSISEMFGEMREKYVGDQKFDVLDNMDWIFNELIIVKEHIANCCPPHW 350
Query: 331 EIFQLMVNLYTERFIQMLRLLSDRA-NELTNIEILKVTGWVVEYQDNLI-GLGVDESLAQ 388
IF++ + Y + ++ L++D +E I IL + + +QD L G +S +
Sbjct: 351 NIFEVYFDQY---YKELHSLITDLVESEPETIIILDILAFDKTFQDTLKQDFGFTKSEVK 407
Query: 389 VCSESGAMDPLMNSYVERMQATTKKWYLNILDA------DKVQPPKRTEDGKLYTPAAVD 442
+ L Y+ + +W N+ A ++ PP DG L+
Sbjct: 408 SVIGDKEKETLFKDYLNLIVVKMTEWIGNLEKAEFDVFLERSTPPHSDSDGLLFLDGTKT 467
Query: 443 LFRILGEQVQI------------VRENSTDIMLYRIALAI------IQVMIDFQA----- 479
F++ +QV++ V E +D++ R I I+ I++
Sbjct: 468 CFQMFTQQVEVAAGTNQAKILVGVVERFSDLLTKRQKNWISKISEEIKKQINYNHKYDID 527
Query: 480 AERERLAEPAPEIGLEPLCAMINNNLRCYDLAMELSTSTMEALPPNYAEQV--NFEDACK 537
E + P +E L A+ N+ ++ D A+ +S+ + + Y +Q+ + E
Sbjct: 528 PESITPEDECPGGLVEYLIAVSNDQMKAADYAVAISSKYGKLVSKVYEKQITNHLEGTLD 587
Query: 538 GFLEVTKEAVRHTLNVIFED 557
GF EV + + + ++F+D
Sbjct: 588 GFAEVAQCSSLGLITLMFDD 607
>sp|Q8BI71|EX3L1_MOUSE Exocyst complex component 3-like protein OS=Mus musculus GN=Exoc3l1
PE=1 SV=1
Length = 739
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 100/475 (21%), Positives = 188/475 (39%), Gaps = 99/475 (20%)
Query: 10 AKEAAVREVAKLLTLPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTG------ 63
A+ AA++ + + P+QL +G ++ I R + ++++ ++V +E QTG
Sbjct: 30 ARGAALKWASGIFYRPEQLTRLGQYRSREIQRNYSLEARIKSVVQSYLEGVQTGVWQLTR 89
Query: 64 -LESLALSEQMISQLRENFISIERYCQECQTLIE---NHDQIKLLSNARNNLSTTLKDVE 119
LE++ + + +SQ + R Q + L E H Q+++L+ L L+ V
Sbjct: 90 ALEAVQGTREALSQAHHLLKGLSRTSQTLEPLRECVVQHKQLQILT----RLLPRLQAVP 145
Query: 120 GMMSISVEAAEAKDSLGDDKELINTYERLTALDGKRRFALAAAESHKEEVGRLR-EYFED 178
++ + +L D + L+ Y L L+ + LA +G L F+
Sbjct: 146 ATVAHT-------QTLIDSERLLEAYVSLRELEQLKEETLAP-------LGGLELPIFQG 191
Query: 179 VDQIWETFEKTLWGYISNFYKLSKESPQTLVRALRVVEMQEILDQQLAEEAAEAEGGGVM 238
+ + E + + +L++E P LV A+RV E++
Sbjct: 192 LGLLAEALGQAVEAAAGAAGRLAREDPALLVAAIRVAEVE-------------------- 231
Query: 239 AAISNPRRSAKKSTTATISSNSHTQQKLKVQGKGYKDKCYEQIRKAVERRF--NKLLTEL 296
T TI L + ++ +C +++ +ER + +L E
Sbjct: 232 -------------TERTI---------LGQAPRDWRQRCLRALQEGLERVHFASPVLPEP 269
Query: 297 -----VFEDLKAALEEARTIGEELADIYDYVAPCFPPRYEIFQLMVN-LYTERFIQMLRL 350
E L+ AL ELA VAPC PP Y + +L + L++ + +L
Sbjct: 270 GALAGWLEALQVALP------AELATAEALVAPCCPPSYRVVELWAHTLHSGLRRSVQQL 323
Query: 351 LSDRANELTNIEILKVTGWVV------EYQDNL-IGLGVDESLAQVCSESGAMDPLMNSY 403
L+ EL + + W + E NL +G D S + S ++ L ++
Sbjct: 324 LA--GPELGAADTFALLHWALHVYTGKEMMGNLELGPEADVSQLEPLLTSENIEQLEAAF 381
Query: 404 VERMQATTKKWYLNILDADKV-----QPPKRTEDGKLYTPAAVDLFRILGEQVQI 453
V ++Q + +W LD + Q P G ++P + +IL E +Q+
Sbjct: 382 VAQVQVSVAQWLKKALDGEVAEWSGEQEPPTDPSGFYHSPMPAIVLQILAENIQV 436
>sp|Q0VCR8|EX3L1_BOVIN Exocyst complex component 3-like protein OS=Bos taurus GN=EXOC3L1
PE=2 SV=1
Length = 739
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 101/484 (20%), Positives = 187/484 (38%), Gaps = 100/484 (20%)
Query: 10 AKEAAVREVAKLLTLPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLAL 69
A+ AA++ + + P+QL +G + + R + ++++ ++V +E +TG+ LA
Sbjct: 29 ARGAALKWASGIFYRPEQLARLGQYRNREVQRTCSLEARIKSVVQSYLEGVKTGVWQLAQ 88
Query: 70 SEQMISQLRENFIS----IERYCQECQTL------IENHDQIKLLSNARNNLSTTLKDVE 119
+ + + RE + + QTL + H Q++ LS L
Sbjct: 89 ALEAVQGAREALGQARGLLRDMAEAAQTLEPLREQVVEHKQLQALSQLLPRLR------- 141
Query: 120 GMMSISVEAAEAK-DSLGDDKELINTYERLTALDGKRRFALAAAESHKEEVGRLR-EYFE 177
+V AA A +L D + L+ Y L L+ + E +G L FE
Sbjct: 142 -----AVPAAVAHTQTLIDAQRLLEAYVSLRELEQLQ-------EETCVPLGGLELPVFE 189
Query: 178 DVDQIWETFEKTLWGYISNFYKLSKESPQTLVRALRVVEMQEILDQQLAEEAAEAEGGGV 237
+ + E + + +L++E+P LV A+RV AE + G
Sbjct: 190 GLGPLAEALGQAVEAAAGAAGQLARENPALLVAAVRV---------------AEVDAGCT 234
Query: 238 MAAISNPRRSAKKSTTATISSNSHTQQKLKVQGKGYKDKCYEQIRKAVERRFNKLLTELV 297
+ PR ++ +C +++ +ER +
Sbjct: 235 TSLEQAPR--------------------------DWRQRCLRALQQGLERVHFGTSLQPG 268
Query: 298 FEDLKAALEEART-IGEELADIYDYVAPCFPPRYEIFQLMVNLYTERFIQMLRLLSDRAN 356
+L LE R + ELA VAPC PP Y++ QL + + L+ L +
Sbjct: 269 PGELAKWLEALRVALPAELAMAEALVAPCCPPHYKVVQLWAHTLHGGLRRCLQQLLE-GP 327
Query: 357 ELTNIEILKVTGWVVE-YQD-NLIG---LGVDESLAQVCSESGAMDPLMN---------S 402
EL + + WV+ YQ ++G LG + ++ ++PL+ +
Sbjct: 328 ELEEADTFTLLHWVLHVYQGPEMMGSLELGPEADVSD-------LEPLLTLENIEQLEAT 380
Query: 403 YVERMQATTKKWYLNILDADKV-----QPPKRTEDGKLYTPAAVDLFRILGEQVQIVREN 457
+V ++QA +W LD + V Q P G ++P + +IL E +++ R
Sbjct: 381 FVAKVQAKVAQWLQKALDGEVVEWGREQEPDTDLSGFYHSPLPAIVLQILEENIRVTRIV 440
Query: 458 STDI 461
S +
Sbjct: 441 SVSL 444
>sp|Q2N695|SUCC_ERYLH Succinyl-CoA ligase [ADP-forming] subunit beta OS=Erythrobacter
litoralis (strain HTCC2594) GN=sucC PE=3 SV=1
Length = 399
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 501 INNNLRCYDLAMELSTSTMEALPPNYAEQVNFEDACKGFLEVTKEAVRHTLNVIFEDPGV 560
++ N+ C L+ +TM+ + N A NF D G T E V +I +DP V
Sbjct: 265 LDGNIGCMVNGAGLAMATMDIIKLNGAFPANFLDVGGG---ATTEKVTAAFKIILKDPAV 321
Query: 561 EQLLVKLY 568
E +LV ++
Sbjct: 322 EGILVNIF 329
>sp|B9JCF4|SUCC_AGRRK Succinyl-CoA ligase [ADP-forming] subunit beta OS=Agrobacterium
radiobacter (strain K84 / ATCC BAA-868) GN=sucC PE=3
SV=1
Length = 397
Score = 38.5 bits (88), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 501 INNNLRCYDLAMELSTSTMEALPPNYAEQVNFEDACKGFLEVTKEAVRHTLNVIFEDPGV 560
++ N+ C L+ +TM+ + AE NF D G TKE V +I DP V
Sbjct: 265 LDGNIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGG---ATKEKVTAAFKIITADPAV 321
Query: 561 EQLLVKLY 568
+ +LV ++
Sbjct: 322 QGILVNIF 329
>sp|A5FYZ9|SUCC_ACICJ Succinyl-CoA ligase [ADP-forming] subunit beta OS=Acidiphilium
cryptum (strain JF-5) GN=sucC PE=3 SV=1
Length = 398
Score = 38.1 bits (87), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 501 INNNLRCYDLAMELSTSTMEALPPNYAEQVNFEDACKGFLEVTKEAVRHTLNVIFEDPGV 560
++ ++ C L+ +TM+ + AE NF D G TKE V +I DP V
Sbjct: 264 LDGSIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGG---ATKERVTAAFKIILSDPNV 320
Query: 561 EQLLVKLY 568
E +LV ++
Sbjct: 321 EGILVNIF 328
>sp|B9JTS8|SUCC_AGRVS Succinyl-CoA ligase [ADP-forming] subunit beta OS=Agrobacterium
vitis (strain S4 / ATCC BAA-846) GN=sucC PE=3 SV=1
Length = 398
Score = 38.1 bits (87), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 501 INNNLRCYDLAMELSTSTMEALPPNYAEQVNFEDACKGFLEVTKEAVRHTLNVIFEDPGV 560
++ N+ C L+ +TM+ + AE NF D G TKE V +I DP V
Sbjct: 265 LDGNIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGG---ATKEKVTAAFKIITADPAV 321
Query: 561 EQLLVKLY 568
+ +LV ++
Sbjct: 322 KGILVNIF 329
>sp|P66868|SUCC_BRUSU Succinyl-CoA ligase [ADP-forming] subunit beta OS=Brucella suis
biovar 1 (strain 1330) GN=sucC PE=3 SV=1
Length = 398
Score = 37.7 bits (86), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 501 INNNLRCYDLAMELSTSTMEALPPNYAEQVNFEDACKGFLEVTKEAVRHTLNVIFEDPGV 560
++ N+ C L+ +TM+ + AE NF D G +KE V +I DP V
Sbjct: 265 LDGNIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGG---ASKEKVTAAFKIITADPAV 321
Query: 561 EQLLVKLY 568
E +LV ++
Sbjct: 322 EGILVNIF 329
>sp|B0CIT0|SUCC_BRUSI Succinyl-CoA ligase [ADP-forming] subunit beta OS=Brucella suis
(strain ATCC 23445 / NCTC 10510) GN=sucC PE=3 SV=1
Length = 398
Score = 37.7 bits (86), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 501 INNNLRCYDLAMELSTSTMEALPPNYAEQVNFEDACKGFLEVTKEAVRHTLNVIFEDPGV 560
++ N+ C L+ +TM+ + AE NF D G +KE V +I DP V
Sbjct: 265 LDGNIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGG---ASKEKVTAAFKIITADPAV 321
Query: 561 EQLLVKLY 568
E +LV ++
Sbjct: 322 EGILVNIF 329
>sp|A5VSQ3|SUCC_BRUO2 Succinyl-CoA ligase [ADP-forming] subunit beta OS=Brucella ovis
(strain ATCC 25840 / 63/290 / NCTC 10512) GN=sucC PE=3
SV=1
Length = 398
Score = 37.7 bits (86), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 501 INNNLRCYDLAMELSTSTMEALPPNYAEQVNFEDACKGFLEVTKEAVRHTLNVIFEDPGV 560
++ N+ C L+ +TM+ + AE NF D G +KE V +I DP V
Sbjct: 265 LDGNIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGG---ASKEKVTAAFKIITADPAV 321
Query: 561 EQLLVKLY 568
E +LV ++
Sbjct: 322 EGILVNIF 329
>sp|P66867|SUCC_BRUME Succinyl-CoA ligase [ADP-forming] subunit beta OS=Brucella
melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC
10094) GN=sucC PE=3 SV=1
Length = 398
Score = 37.7 bits (86), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 501 INNNLRCYDLAMELSTSTMEALPPNYAEQVNFEDACKGFLEVTKEAVRHTLNVIFEDPGV 560
++ N+ C L+ +TM+ + AE NF D G +KE V +I DP V
Sbjct: 265 LDGNIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGG---ASKEKVTAAFKIITADPAV 321
Query: 561 EQLLVKLY 568
E +LV ++
Sbjct: 322 EGILVNIF 329
>sp|C0RFH1|SUCC_BRUMB Succinyl-CoA ligase [ADP-forming] subunit beta OS=Brucella
melitensis biotype 2 (strain ATCC 23457) GN=sucC PE=3
SV=1
Length = 398
Score = 37.7 bits (86), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 501 INNNLRCYDLAMELSTSTMEALPPNYAEQVNFEDACKGFLEVTKEAVRHTLNVIFEDPGV 560
++ N+ C L+ +TM+ + AE NF D G +KE V +I DP V
Sbjct: 265 LDGNIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGG---ASKEKVTAAFKIITADPAV 321
Query: 561 EQLLVKLY 568
E +LV ++
Sbjct: 322 EGILVNIF 329
>sp|A9M8R2|SUCC_BRUC2 Succinyl-CoA ligase [ADP-forming] subunit beta OS=Brucella canis
(strain ATCC 23365 / NCTC 10854) GN=sucC PE=3 SV=1
Length = 398
Score = 37.7 bits (86), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 501 INNNLRCYDLAMELSTSTMEALPPNYAEQVNFEDACKGFLEVTKEAVRHTLNVIFEDPGV 560
++ N+ C L+ +TM+ + AE NF D G +KE V +I DP V
Sbjct: 265 LDGNIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGG---ASKEKVTAAFKIITADPAV 321
Query: 561 EQLLVKLY 568
E +LV ++
Sbjct: 322 EGILVNIF 329
>sp|Q57AX2|SUCC_BRUAB Succinyl-CoA ligase [ADP-forming] subunit beta OS=Brucella abortus
biovar 1 (strain 9-941) GN=sucC PE=3 SV=1
Length = 398
Score = 37.7 bits (86), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 501 INNNLRCYDLAMELSTSTMEALPPNYAEQVNFEDACKGFLEVTKEAVRHTLNVIFEDPGV 560
++ N+ C L+ +TM+ + AE NF D G +KE V +I DP V
Sbjct: 265 LDGNIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGG---ASKEKVTAAFKIITADPAV 321
Query: 561 EQLLVKLY 568
E +LV ++
Sbjct: 322 EGILVNIF 329
>sp|B2S880|SUCC_BRUA1 Succinyl-CoA ligase [ADP-forming] subunit beta OS=Brucella abortus
(strain S19) GN=sucC PE=3 SV=1
Length = 398
Score = 37.7 bits (86), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 501 INNNLRCYDLAMELSTSTMEALPPNYAEQVNFEDACKGFLEVTKEAVRHTLNVIFEDPGV 560
++ N+ C L+ +TM+ + AE NF D G +KE V +I DP V
Sbjct: 265 LDGNIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGG---ASKEKVTAAFKIITADPAV 321
Query: 561 EQLLVKLY 568
E +LV ++
Sbjct: 322 EGILVNIF 329
>sp|B6IP72|SUCC_RHOCS Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodospirillum
centenum (strain ATCC 51521 / SW) GN=sucC PE=3 SV=1
Length = 398
Score = 37.7 bits (86), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 501 INNNLRCYDLAMELSTSTMEALPPNYAEQVNFEDACKGFLEVTKEAVRHTLNVIFEDPGV 560
++ N+ C L+ +TM+ + E NF D G TKE V +I DP V
Sbjct: 264 LDGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVGGG---ATKERVTTAFKLILSDPHV 320
Query: 561 EQLLVKLY 568
E +LV ++
Sbjct: 321 EGILVNIF 328
>sp|A6UDP2|SUCC_SINMW Succinyl-CoA ligase [ADP-forming] subunit beta OS=Sinorhizobium
medicae (strain WSM419) GN=sucC PE=3 SV=1
Length = 398
Score = 37.4 bits (85), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 501 INNNLRCYDLAMELSTSTMEALPPNYAEQVNFEDACKGFLEVTKEAVRHTLNVIFEDPGV 560
++ N+ C L+ +TM+ + AE NF D G +KE V +I DP V
Sbjct: 265 LDGNIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGG---ASKEKVTQAFKIITADPAV 321
Query: 561 EQLLVKLY 568
+ +LV ++
Sbjct: 322 KGILVNIF 329
>sp|Q9EYG9|SUCC_RHIME Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhizobium
meliloti (strain 1021) GN=sucC PE=3 SV=1
Length = 398
Score = 37.0 bits (84), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 501 INNNLRCYDLAMELSTSTMEALPPNYAEQVNFEDACKGFLEVTKEAVRHTLNVIFEDPGV 560
++ N+ C L+ +TM+ + AE NF D G +KE V +I DP V
Sbjct: 265 LDGNIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGG---ASKEKVTQAFKIITADPAV 321
Query: 561 EQLLVKLY 568
+ +LV ++
Sbjct: 322 KGILVNIF 329
>sp|A7HT39|SUCC_PARL1 Succinyl-CoA ligase [ADP-forming] subunit beta OS=Parvibaculum
lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966)
GN=sucC PE=3 SV=1
Length = 389
Score = 37.0 bits (84), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 501 INNNLRCYDLAMELSTSTMEALPPNYAEQVNFEDACKGFLEVTKEAVRHTLNVIFEDPGV 560
++ + C L+ +TM+ + +E NF D G TKE V +I DP V
Sbjct: 255 LDGKIGCMVNGAGLAMATMDIIKLYGSEPANFLDVGGG---ATKEKVTAAFKIILSDPSV 311
Query: 561 EQLLVKLY 568
E +LV ++
Sbjct: 312 EGILVNIF 319
>sp|A6WXE8|SUCC_OCHA4 Succinyl-CoA ligase [ADP-forming] subunit beta OS=Ochrobactrum
anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168)
GN=sucC PE=3 SV=1
Length = 398
Score = 36.6 bits (83), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 501 INNNLRCYDLAMELSTSTMEALPPNYAEQVNFEDACKGFLEVTKEAVRHTLNVIFEDPGV 560
++ N+ C L+ +TM+ + AE NF D G +KE V +I DP V
Sbjct: 265 LDGNIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGG---ASKEKVTAAFKIITADPAV 321
Query: 561 EQLLVKLY 568
+ +LV ++
Sbjct: 322 QGILVNIF 329
>sp|A9N7C4|RSMC_SALPB Ribosomal RNA small subunit methyltransferase C OS=Salmonella
paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rsmC PE=3
SV=1
Length = 342
Score = 36.6 bits (83), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 63/293 (21%), Positives = 122/293 (41%), Gaps = 37/293 (12%)
Query: 27 QLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIER 86
++ F GD++ D AR + S+ T +Q Q ALS QM +R + ++
Sbjct: 22 RILFAGDLQDDLPARFECAASRAHT---QQFHHWQ------ALSRQMCDNVRFSLVAQAS 72
Query: 87 YCQECQTLIENHDQIKLLSNARNNLSTTLKDVEGMMSISVEAAEAKDSLGDDKELINTYE 146
+C TLI + K A+ L L + + + V E + + + ++ Y
Sbjct: 73 DVADCDTLIYYWPKNK--PEAQFQLMNILSLMPSGVDVFV-VGENRSGVRSAEPMLADYA 129
Query: 147 RLTALDGKRRFALAAAESHKEEVGRLREYFEDVDQIWETFEKTLWGYIS-------NFYK 199
L +D RR L K+ L ++ + T KTL G S +
Sbjct: 130 PLNKVDSARRCGLYHGRLEKQPQFSLESWWAEYSIDGLTI-KTLPGVFSRDGLDVGSQLL 188
Query: 200 LSKESPQTLVRALRVVEMQEILDQQLAEEAAEAEGGGVMAAISNPRRSAKKSTTATISSN 259
LS +P T + L V +L LA + + + +S P A +++ AT+++N
Sbjct: 189 LSTLTPHTKGKVLDVGCGAGVLSAALASHSPKVR--LTLCDVSAP---AVEASRATLAAN 243
Query: 260 SHTQQKLKVQGKGYKDKCYEQIRKAVERRFNKLLTELVFED-LKAALEEARTI 311
++G+ + + +++ RF+ +++ F D ++ +L+ A+T+
Sbjct: 244 G-------LEGEVFASNVFSEVKG----RFDMIISNPPFHDGMQTSLDAAQTL 285
>sp|Q98EC5|SUCC_RHILO Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhizobium loti
(strain MAFF303099) GN=sucC PE=3 SV=1
Length = 397
Score = 36.6 bits (83), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 501 INNNLRCYDLAMELSTSTMEALPPNYAEQVNFEDACKGFLEVTKEAVRHTLNVIFEDPGV 560
++ N+ C L+ +TM+ + AE NF D G +KE V +I +DP V
Sbjct: 265 LDGNIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGG---ASKEKVTAAFKIITKDPAV 321
Query: 561 EQLLVKLY 568
+ +L+ ++
Sbjct: 322 KGILINIF 329
>sp|A1UQV9|SUCC_BARBK Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bartonella
bacilliformis (strain ATCC 35685 / KC583) GN=sucC PE=3
SV=1
Length = 398
Score = 36.2 bits (82), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 501 INNNLRCYDLAMELSTSTMEALPPNYAEQVNFEDACKGFLEVTKEAVRHTLNVIFEDPGV 560
++ + C L+ +TM+ + AE NF D G +KE V H +I DP V
Sbjct: 265 LDGMIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGG---ASKEKVTHAFKIITADPNV 321
Query: 561 EQLLVKLY 568
+ +LV ++
Sbjct: 322 KGILVNIF 329
>sp|Q2W063|SUCC_MAGSA Succinyl-CoA ligase [ADP-forming] subunit beta OS=Magnetospirillum
magneticum (strain AMB-1 / ATCC 700264) GN=sucC PE=3
SV=1
Length = 398
Score = 36.2 bits (82), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 501 INNNLRCYDLAMELSTSTMEALPPNYAEQVNFEDACKGFLEVTKEAVRHTLNVIFEDPGV 560
++ + C L+ +TM+ + AE NF D G TKE V +I DP V
Sbjct: 264 LDGQIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGG---ATKERVTTAFKLILSDPNV 320
Query: 561 EQLLVKLY 568
E +LV ++
Sbjct: 321 EGILVNIF 328
>sp|B9KNB3|SUCC_RHOSK Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodobacter
sphaeroides (strain KD131 / KCTC 12085) GN=sucC PE=3
SV=1
Length = 397
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 501 INNNLRCYDLAMELSTSTMEALPPNYAEQVNFEDACKGFLEVTKEAVRHTLNVIFEDPGV 560
++ + C L+ +TM+ + AE NF D G TKE V +I DP V
Sbjct: 265 LDGEIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGG---ATKEKVTEAFKIITSDPNV 321
Query: 561 EQLLVKLY 568
+ +LV ++
Sbjct: 322 KGILVNIF 329
>sp|Q3IZ84|SUCC_RHOS4 Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodobacter
sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM
158) GN=sucC PE=3 SV=1
Length = 397
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 501 INNNLRCYDLAMELSTSTMEALPPNYAEQVNFEDACKGFLEVTKEAVRHTLNVIFEDPGV 560
++ + C L+ +TM+ + AE NF D G TKE V +I DP V
Sbjct: 265 LDGEIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGG---ATKEKVTEAFKIITSDPNV 321
Query: 561 EQLLVKLY 568
+ +LV ++
Sbjct: 322 KGILVNIF 329
>sp|A3PN13|SUCC_RHOS1 Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodobacter
sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=sucC PE=3
SV=1
Length = 397
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 501 INNNLRCYDLAMELSTSTMEALPPNYAEQVNFEDACKGFLEVTKEAVRHTLNVIFEDPGV 560
++ + C L+ +TM+ + AE NF D G TKE V +I DP V
Sbjct: 265 LDGEIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGG---ATKEKVTEAFKIITSDPNV 321
Query: 561 EQLLVKLY 568
+ +LV ++
Sbjct: 322 KGILVNIF 329
>sp|A4WNM6|SUCC_RHOS5 Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodobacter
sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=sucC PE=3
SV=1
Length = 397
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 501 INNNLRCYDLAMELSTSTMEALPPNYAEQVNFEDACKGFLEVTKEAVRHTLNVIFEDPGV 560
++ + C L+ +TM+ + AE NF D G TKE V +I DP V
Sbjct: 265 LDGEIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGG---ATKEKVTEAFKIITSDPNV 321
Query: 561 EQLLVKLY 568
+ +LV ++
Sbjct: 322 KGILVNIF 329
>sp|A4W687|RSMC_ENT38 Ribosomal RNA small subunit methyltransferase C OS=Enterobacter sp.
(strain 638) GN=rsmC PE=3 SV=1
Length = 342
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 124/303 (40%), Gaps = 57/303 (18%)
Query: 27 QLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIER 86
++ F GDM+ D R + S+ T +Q Q LS QM ++R + ++ +
Sbjct: 22 RILFAGDMQDDLPGRFECAASRAHT---QQYHHWQL------LSRQMEDRVRFSLVAEQS 72
Query: 87 YCQECQTLIENHDQIKLLSNARNNLSTTLKDVEGMMSISVE---AAEAKDSLGDDKELIN 143
+C TLI + K A+ L L MM + + E + + + ++
Sbjct: 73 DVADCDTLIYYWPKNK--PEAQFQLMNLLS----MMPVGCDIFVVGENRSGVRSAESMLA 126
Query: 144 TYERLTALDGKRRFALAAAESHKEEVGRL-REYFEDVDQIWETFE------KTLWGYIS- 195
Y L +D RR L GRL ++ D ++ W ++ KTL G S
Sbjct: 127 EYATLNKIDSARRCGLYH--------GRLDKQPTFDAEKYWGEYQLDGLTIKTLPGVFSR 178
Query: 196 ------NFYKLSKESPQTLVRALRVVEMQEILDQQLAEEAAEAEGGGVMAAISNPRRSAK 249
+ LS +P T + L V +L LA + + V +S+ A
Sbjct: 179 DGLDVGSQLLLSTFTPHTKGKVLDVGCGAGVLSAVLASHSPK-----VRLTLSDVSAPAV 233
Query: 250 KSTTATISSNSHTQQKLKVQGKGYKDKCYEQIRKAVERRFNKLLTELVFED-LKAALEEA 308
+++ AT+++N ++G + + + V RF+ +++ F D ++ +LE A
Sbjct: 234 EASRATLAANG-------LEGDVFASNVFSE----VTGRFDIIISNPPFHDGMETSLEAA 282
Query: 309 RTI 311
+T+
Sbjct: 283 QTL 285
>sp|B3DLE8|SPDLY_XENTR Protein Spindly OS=Xenopus tropicalis GN=spdl1 PE=2 SV=1
Length = 611
Score = 33.9 bits (76), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 17/90 (18%)
Query: 277 CYEQIRKAVERRFNKLLTELV--FEDLKAALEEARTIGEELADIYDYVAPCFPPRYEIFQ 334
C EQ+++ +ER ++ L+E+ E LKA L+EAR ++L +Y + + E
Sbjct: 91 CLEQLQEQLERNHHRELSEIKDKLEKLKAELDEARLSEKQLKHKLEYQSEVLANKSE--- 147
Query: 335 LMVNLYTERFIQMLRLLSDRANELTNIEIL 364
LR++S+R +E + E+L
Sbjct: 148 ------------ELRMMSERVHETMSSEML 165
>sp|C1DB55|SUCC_LARHH Succinyl-CoA ligase [ADP-forming] subunit beta OS=Laribacter
hongkongensis (strain HLHK9) GN=sucC PE=3 SV=1
Length = 388
Score = 33.9 bits (76), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 501 INNNLRCYDLAMELSTSTMEALPPNYAEQVNFEDACKGFLEVTKEAVRHTLNVIFEDPGV 560
+ N+ C L+ +TM+ + + NF D G TKE V +I DP V
Sbjct: 256 LEGNIGCMVNGAGLAMATMDIIKLKGGQPANFLDVGGG---ATKERVVEAFKLILADPSV 312
Query: 561 EQLLVKLY 568
+ +L+ ++
Sbjct: 313 KGVLINIF 320
>sp|Q891I0|DNLJ_CLOTE DNA ligase OS=Clostridium tetani (strain Massachusetts / E88)
GN=ligA PE=3 SV=1
Length = 668
Score = 33.5 bits (75), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 72 QMISQLRENFISIERYCQECQTLIENHDQIKLLSNARNNLSTTLKDVEGMMSISVEAAEA 131
+MI L ++ Y +EC+ ++E D+IK + + RN L+ D++G++ I++ +
Sbjct: 244 EMIGFLISMGFPVDPYIKECKDIVEIKDEIKYIEDIRNELNY---DIDGIV-IAINHIKT 299
Query: 132 KDSLG 136
++ LG
Sbjct: 300 REVLG 304
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 203,884,054
Number of Sequences: 539616
Number of extensions: 8094963
Number of successful extensions: 29538
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 158
Number of HSP's that attempted gapping in prelim test: 29376
Number of HSP's gapped (non-prelim): 291
length of query: 609
length of database: 191,569,459
effective HSP length: 123
effective length of query: 486
effective length of database: 125,196,691
effective search space: 60845591826
effective search space used: 60845591826
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)