Query 007292
Match_columns 609
No_of_seqs 147 out of 389
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 21:36:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007292.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007292hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5173 SEC6 Exocyst complex s 100.0 4.8E-69 1E-73 551.1 45.2 557 12-595 2-596 (742)
2 PF06046 Sec6: Exocyst complex 100.0 5E-67 1.1E-71 587.5 9.5 394 176-595 1-422 (566)
3 KOG2286 Exocyst complex subuni 100.0 5.5E-62 1.2E-66 528.7 43.7 499 12-594 2-533 (667)
4 KOG2180 Late Golgi protein sor 100.0 1.7E-40 3.7E-45 351.7 41.2 522 13-609 20-633 (793)
5 PF04100 Vps53_N: Vps53-like, 100.0 1.5E-30 3.3E-35 274.4 33.1 345 13-422 5-381 (383)
6 PF10191 COG7: Golgi complex c 98.8 0.00012 2.7E-09 84.9 41.8 491 13-573 11-603 (766)
7 KOG0412 Golgi transport comple 98.4 0.0071 1.5E-07 66.8 40.7 121 17-139 22-145 (773)
8 PF05664 DUF810: Protein of un 97.9 0.00071 1.5E-08 76.5 20.6 208 276-488 384-605 (677)
9 PF06248 Zw10: Centromere/kine 97.0 0.96 2.1E-05 51.6 47.1 125 27-153 8-136 (593)
10 KOG2176 Exocyst complex, subun 96.9 1.1 2.4E-05 50.8 44.3 123 30-153 45-168 (800)
11 PF04048 Sec8_exocyst: Sec8 ex 96.9 0.041 9E-07 50.3 14.6 101 30-130 37-141 (142)
12 PF10475 DUF2450: Protein of u 96.9 0.3 6.4E-06 50.4 22.6 137 15-152 16-154 (291)
13 PF06419 COG6: Conserved oligo 95.5 6.4 0.00014 45.1 44.1 110 332-453 304-414 (618)
14 PF04437 RINT1_TIP1: RINT-1 / 94.1 1.2 2.5E-05 49.7 15.3 259 310-573 40-340 (494)
15 PF04124 Dor1: Dor1-like famil 93.1 13 0.00029 39.1 32.4 71 27-97 8-85 (338)
16 PF15469 Sec5: Exocyst complex 93.1 8.3 0.00018 36.6 17.2 136 47-196 2-150 (182)
17 PF07393 Sec10: Exocyst comple 92.4 27 0.00059 40.8 35.0 59 311-369 200-259 (710)
18 PF10392 COG5: Golgi transport 92.3 7.1 0.00015 35.1 14.7 110 14-123 10-124 (132)
19 PF08700 Vps51: Vps51/Vps67; 91.4 3.3 7.1E-05 34.0 10.7 74 14-88 8-81 (87)
20 KOG3691 Exocyst complex subuni 90.4 41 0.00089 39.1 21.6 108 22-129 39-150 (982)
21 KOG2115 Vacuolar sorting prote 90.1 44 0.00096 39.0 24.7 117 24-147 234-357 (951)
22 KOG1011 Neurotransmitter relea 89.7 28 0.00061 38.9 18.2 184 324-513 668-863 (1283)
23 KOG3958 Putative dynamitin [Cy 87.9 16 0.00035 36.8 13.9 110 13-122 212-327 (371)
24 smart00762 Cog4 COG4 transport 81.7 28 0.0006 36.5 13.3 78 395-474 234-311 (324)
25 PF09763 Sec3_C: Exocyst compl 79.5 1.3E+02 0.0029 35.1 19.9 162 30-198 2-179 (701)
26 PF06148 COG2: COG (conserved 75.5 5 0.00011 36.1 4.9 105 29-133 26-131 (133)
27 PF07889 DUF1664: Protein of u 74.4 32 0.00068 30.7 9.4 22 30-51 58-79 (126)
28 cd07639 BAR_ACAP1 The Bin/Amph 73.2 93 0.002 30.1 14.4 48 67-120 4-51 (200)
29 PF08317 Spc7: Spc7 kinetochor 73.1 51 0.0011 34.5 12.4 16 167-182 276-291 (325)
30 PF15290 Syntaphilin: Golgi-lo 72.7 72 0.0016 32.2 12.2 51 66-116 118-169 (305)
31 PF08318 COG4: COG4 transport 67.8 70 0.0015 33.6 12.1 78 397-474 238-317 (331)
32 PF07106 TBPIP: Tat binding pr 67.3 77 0.0017 29.6 11.1 87 24-112 70-158 (169)
33 COG1579 Zn-ribbon protein, pos 66.8 1.4E+02 0.0031 29.7 20.2 27 172-198 158-184 (239)
34 PF10602 RPN7: 26S proteasome 64.5 1E+02 0.0022 29.1 11.4 118 29-151 3-124 (177)
35 KOG0810 SNARE protein Syntaxin 64.1 1.8E+02 0.0039 30.0 18.4 43 169-211 215-260 (297)
36 PF03908 Sec20: Sec20; InterP 62.3 83 0.0018 26.1 9.2 53 49-101 13-65 (92)
37 PF10158 LOH1CR12: Tumour supp 59.7 1.3E+02 0.0029 27.0 12.2 17 106-122 98-114 (131)
38 KOG3758 Uncharacterized conser 59.4 3.1E+02 0.0066 31.1 42.4 76 14-89 18-95 (655)
39 PF07889 DUF1664: Protein of u 59.2 1.3E+02 0.0029 26.8 11.7 43 79-123 68-110 (126)
40 COG4477 EzrA Negative regulato 58.8 2.9E+02 0.0064 30.7 15.5 126 36-190 100-227 (570)
41 smart00787 Spc7 Spc7 kinetocho 58.5 1.8E+02 0.0039 30.3 12.8 15 168-182 272-286 (312)
42 cd07636 BAR_GRAF The Bin/Amphi 58.5 1.8E+02 0.004 28.2 15.5 22 99-120 30-51 (207)
43 PF10112 Halogen_Hydrol: 5-bro 58.1 1.8E+02 0.0039 27.9 12.9 27 170-196 160-186 (199)
44 PF07926 TPR_MLP1_2: TPR/MLP1/ 56.4 1.3E+02 0.0029 26.8 10.2 40 3-42 33-72 (132)
45 PF07426 Dynactin_p22: Dynacti 54.4 1.9E+02 0.0042 27.2 15.1 79 54-138 36-116 (174)
46 PF10498 IFT57: Intra-flagella 52.4 3.2E+02 0.0069 29.1 17.9 20 134-153 323-342 (359)
47 KOG0517 Beta-spectrin [Cytoske 52.3 6.5E+02 0.014 32.7 19.3 123 54-187 1667-1816(2473)
48 PF10191 COG7: Golgi complex c 52.1 4.7E+02 0.01 31.0 28.7 140 333-483 216-365 (766)
49 KOG0994 Extracellular matrix g 51.7 5.4E+02 0.012 31.6 20.8 13 26-38 1539-1551(1758)
50 KOG1655 Protein involved in va 50.4 2.4E+02 0.0051 27.1 12.7 86 29-122 22-110 (218)
51 PF08654 DASH_Dad2: DASH compl 50.2 1.5E+02 0.0032 25.4 8.8 56 34-89 2-62 (103)
52 PF08580 KAR9: Yeast cortical 49.8 4.6E+02 0.01 30.5 15.4 41 58-98 36-76 (683)
53 cd07633 BAR_OPHN1 The Bin/Amph 49.0 2.6E+02 0.0056 27.1 15.8 48 67-120 4-51 (207)
54 PF15290 Syntaphilin: Golgi-lo 48.8 3E+02 0.0066 27.9 11.9 30 170-204 145-174 (305)
55 KOG0811 SNARE protein PEP12/VA 48.5 3.1E+02 0.0067 27.9 18.0 41 155-198 178-218 (269)
56 PF05531 NPV_P10: Nucleopolyhe 48.1 71 0.0015 25.6 6.0 24 58-81 21-44 (75)
57 KOG0243 Kinesin-like protein [ 47.1 6E+02 0.013 30.8 15.8 32 67-98 541-572 (1041)
58 KOG4182 Uncharacterized conser 46.5 4.3E+02 0.0093 29.0 31.7 107 13-119 12-129 (828)
59 KOG0018 Structural maintenance 46.1 2.8E+02 0.0061 33.4 12.8 93 25-119 651-745 (1141)
60 PF13124 DUF3963: Protein of u 45.5 4.4 9.5E-05 27.1 -0.9 22 578-600 9-30 (40)
61 PF06160 EzrA: Septation ring 45.1 5.1E+02 0.011 29.4 29.2 14 267-280 436-449 (560)
62 PF11932 DUF3450: Protein of u 43.8 3.4E+02 0.0074 27.0 16.3 86 26-115 21-107 (251)
63 KOG1328 Synaptic vesicle prote 43.7 5.8E+02 0.013 29.7 21.4 161 433-600 649-837 (1103)
64 PF08651 DASH_Duo1: DASH compl 43.0 1.8E+02 0.0039 23.6 8.8 41 69-109 19-60 (78)
65 PF04156 IncA: IncA protein; 42.9 3E+02 0.0064 26.0 14.0 23 30-52 85-107 (191)
66 PF12718 Tropomyosin_1: Tropom 41.2 2.8E+02 0.006 25.2 14.7 34 30-64 32-65 (143)
67 TIGR03042 PS_II_psbQ_bact phot 40.3 2.9E+02 0.0063 25.2 9.7 30 24-54 31-60 (142)
68 PF00038 Filament: Intermediat 39.8 4.3E+02 0.0094 27.1 18.2 64 27-90 166-234 (312)
69 PF04912 Dynamitin: Dynamitin 39.7 5E+02 0.011 27.8 18.2 45 72-116 295-339 (388)
70 KOG0517 Beta-spectrin [Cytoske 39.0 1E+03 0.022 31.1 21.3 97 10-114 398-502 (2473)
71 PF05478 Prominin: Prominin; 38.5 7.5E+02 0.016 29.5 20.8 82 32-117 205-289 (806)
72 PLN02939 transferase, transfer 37.4 8.3E+02 0.018 29.7 19.6 32 8-39 148-180 (977)
73 PF06160 EzrA: Septation ring 37.0 6.7E+02 0.014 28.4 21.1 43 110-153 158-201 (560)
74 KOG2346 Uncharacterized conser 36.2 1.2E+02 0.0027 33.2 7.4 106 20-129 40-153 (636)
75 PF14782 BBS2_C: Ciliary BBSom 35.7 4.9E+02 0.011 28.5 12.1 91 25-123 303-393 (431)
76 KOG4286 Dystrophin-like protei 35.4 7.8E+02 0.017 28.7 14.5 77 48-131 210-288 (966)
77 PF08649 DASH_Dad1: DASH compl 35.4 2E+02 0.0043 21.9 8.0 54 38-95 3-56 (58)
78 KOG2307 Low density lipoprotei 35.3 6.9E+02 0.015 28.1 29.6 167 31-215 48-230 (705)
79 PHA03386 P10 fibrous body prot 34.7 2.1E+02 0.0046 23.9 6.9 45 42-87 14-58 (94)
80 PRK10807 paraquat-inducible pr 34.6 5.1E+02 0.011 29.3 12.6 7 25-31 412-418 (547)
81 COG3096 MukB Uncharacterized p 34.4 8.1E+02 0.017 28.6 19.3 49 91-139 454-506 (1480)
82 PRK04778 septation ring format 34.1 7.4E+02 0.016 28.1 20.6 137 15-153 50-205 (569)
83 PF09731 Mitofilin: Mitochondr 34.1 7.4E+02 0.016 28.1 15.0 112 32-144 329-451 (582)
84 PF11571 Med27: Mediator compl 33.8 59 0.0013 27.0 3.8 50 321-376 3-52 (90)
85 KOG0996 Structural maintenance 33.4 1E+03 0.022 29.4 21.9 37 120-156 915-952 (1293)
86 PHA03332 membrane glycoprotein 33.3 9.6E+02 0.021 29.2 14.2 20 66-85 885-904 (1328)
87 TIGR02132 phaR_Bmeg polyhydrox 32.9 3.2E+02 0.0069 25.8 8.6 30 22-51 68-97 (189)
88 PF05667 DUF812: Protein of un 32.8 8E+02 0.017 28.1 18.7 38 30-68 318-355 (594)
89 PF10157 DUF2365: Uncharacteri 32.7 4E+02 0.0086 24.5 13.6 24 29-52 55-78 (149)
90 TIGR01005 eps_transp_fam exopo 32.6 8.8E+02 0.019 28.5 16.0 20 33-52 288-307 (754)
91 KOG1853 LIS1-interacting prote 32.4 5.2E+02 0.011 25.8 15.4 42 46-90 43-84 (333)
92 PF00522 VPR: VPR/VPX protein; 31.9 33 0.00071 28.9 1.9 33 310-342 21-55 (96)
93 KOG4514 Uncharacterized conser 31.8 4.5E+02 0.0097 24.9 12.3 34 86-119 186-219 (222)
94 PF00015 MCPsignal: Methyl-acc 31.6 4.5E+02 0.0097 24.8 12.5 96 26-121 82-178 (213)
95 PRK07739 flgK flagellar hook-a 31.3 7.8E+02 0.017 27.5 14.3 31 7-38 94-124 (507)
96 PF12128 DUF3584: Protein of u 31.2 1.1E+03 0.025 29.4 18.5 10 149-158 500-509 (1201)
97 PRK04863 mukB cell division pr 30.9 1.3E+03 0.027 29.8 22.1 34 55-88 397-430 (1486)
98 PRK11546 zraP zinc resistance 30.9 1.9E+02 0.0042 26.3 6.8 58 24-82 45-106 (143)
99 PRK06665 flgK flagellar hook-a 30.4 8.9E+02 0.019 27.9 13.9 31 7-38 94-124 (627)
100 PF10267 Tmemb_cc2: Predicted 30.4 7.2E+02 0.016 26.8 18.0 82 62-152 233-318 (395)
101 PF05667 DUF812: Protein of un 30.4 8.7E+02 0.019 27.8 23.8 40 12-51 379-419 (594)
102 PRK02224 chromosome segregatio 29.7 1E+03 0.022 28.4 22.2 26 66-91 207-232 (880)
103 PRK11281 hypothetical protein; 29.3 8.2E+02 0.018 30.4 13.7 12 530-541 774-785 (1113)
104 PF10241 KxDL: Uncharacterized 29.3 2.9E+02 0.0062 22.8 7.2 53 278-330 34-88 (88)
105 PRK00578 prfB peptide chain re 29.0 7.2E+02 0.016 26.5 11.8 61 74-135 25-85 (367)
106 TIGR03185 DNA_S_dndD DNA sulfu 28.5 9.6E+02 0.021 27.7 14.4 8 172-179 511-518 (650)
107 KOG0964 Structural maintenance 28.3 1.1E+03 0.025 28.4 19.3 33 321-353 1113-1149(1200)
108 KOG0964 Structural maintenance 28.2 1.1E+03 0.025 28.4 16.7 118 67-190 680-805 (1200)
109 PF05377 FlaC_arch: Flagella a 27.9 2.7E+02 0.0058 21.0 6.5 30 41-71 8-37 (55)
110 COG1196 Smc Chromosome segrega 27.7 1.3E+03 0.028 28.8 21.1 204 11-215 304-538 (1163)
111 PHA03332 membrane glycoprotein 27.6 1.2E+03 0.026 28.5 17.7 68 66-135 875-946 (1328)
112 PF15450 DUF4631: Domain of un 27.4 6E+02 0.013 28.2 10.9 60 16-75 351-411 (531)
113 PF10267 Tmemb_cc2: Predicted 27.2 8.2E+02 0.018 26.4 12.8 44 71-119 275-318 (395)
114 PF04799 Fzo_mitofusin: fzo-li 27.2 5.1E+02 0.011 24.4 9.0 19 35-53 100-118 (171)
115 PF10158 LOH1CR12: Tumour supp 26.7 4.7E+02 0.01 23.5 10.8 50 73-122 57-107 (131)
116 PF10241 KxDL: Uncharacterized 26.3 3.7E+02 0.0081 22.1 10.4 29 24-52 9-37 (88)
117 KOG4331 Polytopic membrane pro 26.2 7.4E+02 0.016 29.3 11.8 61 30-91 253-314 (865)
118 KOG0994 Extracellular matrix g 26.2 1.3E+03 0.029 28.5 24.2 7 24-30 1509-1515(1758)
119 PF09385 HisK_N: Histidine kin 26.1 4.9E+02 0.011 23.4 8.3 77 11-87 43-119 (133)
120 COG1340 Uncharacterized archae 26.1 7.4E+02 0.016 25.5 19.4 49 42-90 39-87 (294)
121 PF10911 DUF2717: Protein of u 26.0 3.5E+02 0.0076 21.8 6.9 38 16-53 3-40 (77)
122 PF10046 BLOC1_2: Biogenesis o 26.0 4E+02 0.0087 22.4 12.6 63 49-111 8-75 (99)
123 PF05781 MRVI1: MRVI1 protein; 25.8 9.8E+02 0.021 26.8 16.3 93 30-123 210-306 (538)
124 PF10168 Nup88: Nuclear pore c 25.3 1.2E+03 0.025 27.5 17.5 13 13-25 504-516 (717)
125 PF04642 DUF601: Protein of un 25.2 6.9E+02 0.015 24.9 10.8 22 99-120 249-270 (311)
126 COG0216 PrfA Protein chain rel 25.2 3.5E+02 0.0077 28.3 8.3 65 72-137 7-71 (363)
127 KOG4603 TBP-1 interacting prot 24.9 5.8E+02 0.013 23.9 12.1 56 28-92 81-136 (201)
128 cd07635 BAR_GRAF2 The Bin/Amph 23.3 7E+02 0.015 24.3 15.0 22 99-120 30-51 (207)
129 PF02609 Exonuc_VII_S: Exonucl 23.0 3.1E+02 0.0068 20.1 6.4 48 28-83 5-52 (53)
130 KOG2196 Nuclear porin [Nuclear 23.0 6.6E+02 0.014 25.0 9.2 37 16-52 151-190 (254)
131 PF10372 YojJ: Bacterial membr 22.9 1.9E+02 0.0041 23.0 4.6 24 47-70 9-32 (70)
132 cd07603 BAR_ACAPs The Bin/Amph 22.8 6.9E+02 0.015 24.1 17.0 48 67-120 4-51 (200)
133 PF02403 Seryl_tRNA_N: Seryl-t 22.7 2.9E+02 0.0062 23.4 6.3 18 31-48 34-51 (108)
134 PRK11637 AmiB activator; Provi 22.6 1E+03 0.022 25.8 21.3 27 67-93 84-110 (428)
135 cd08915 V_Alix_like Protein-in 22.5 9E+02 0.019 25.2 23.6 53 140-192 194-251 (342)
136 TIGR03017 EpsF chain length de 22.5 1E+03 0.022 25.8 12.5 21 34-54 255-275 (444)
137 PF04011 LemA: LemA family; I 22.4 6.6E+02 0.014 23.7 12.8 99 29-128 34-159 (186)
138 PF10168 Nup88: Nuclear pore c 22.4 1.3E+03 0.028 27.1 14.1 49 32-80 546-594 (717)
139 PF10805 DUF2730: Protein of u 22.1 3.7E+02 0.0081 23.0 6.8 72 17-104 26-97 (106)
140 KOG0995 Centromere-associated 21.9 1.2E+03 0.025 26.4 20.1 164 32-203 220-400 (581)
141 COG0497 RecN ATPase involved i 21.7 1.2E+03 0.026 26.4 15.6 142 1-153 218-370 (557)
142 PF12252 SidE: Dot/Icm substra 21.4 1.6E+03 0.034 27.6 19.6 53 145-202 1210-1262(1439)
143 PF10167 NEP: Uncharacterised 20.7 5.9E+02 0.013 22.4 10.5 68 21-89 23-92 (118)
144 TIGR00293 prefoldin, archaeal 20.5 5.4E+02 0.012 22.4 7.8 30 55-84 13-42 (126)
145 TIGR00020 prfB peptide chain r 20.3 1.1E+03 0.023 25.2 12.0 62 73-135 24-85 (364)
No 1
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=100.00 E-value=4.8e-69 Score=551.13 Aligned_cols=557 Identities=16% Similarity=0.209 Sum_probs=476.6
Q ss_pred HHHHHHHHhhcCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007292 12 EAAVREVAKLLTLPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQEC 91 (609)
Q Consensus 12 ~~a~~~v~~ll~~p~~L~kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~ 91 (609)
+.|+.++.+.+++|.+|.++..+++++.+ ..+|.+.....-..+.. .|....+....+.....++.++|.+.
T Consensus 2 ~~~l~q~~~~~~~d~~l~~v~Di~eq~~k-----f~~l~~h~~~~~~e~~~---~ln~~~n~~~~i~~~~~e~~~l~e~~ 73 (742)
T COG5173 2 DKALTQLSETLRHDSDLQTVLDIIEQSTK-----FEALEHHDGNLSAEISK---CLNNILNISKRIYGLEEELKSLVEGK 73 (742)
T ss_pred ChHHHHHHHHhcCchHHHHHHHHHHHHHH-----HHHHHhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 36899999999999999999999999988 23333332221111221 46667788888899999999999999
Q ss_pred HHHHHchHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHhhhc-------CChhHHHHHHHHHHHHhHHHHHHHHH-h
Q 007292 92 QTLIENHDQIKLLSNARNNLSTTLKDVEGMMSISVEAAEAKDSLG-------DDKELINTYERLTALDGKRRFALAAA-E 163 (609)
Q Consensus 92 ~~~v~~~~~Ik~l~~~~~nl~~t~~~l~~l~~~~~~~~~~~~~l~-------~~~~LL~ah~~L~~Le~~rd~~l~~~-~ 163 (609)
+.+|..|+.+-++...++|..+|..+..+|..+.+..+..+++++ ++||||.+|+.|+.+++||.++..++ .
T Consensus 74 r~~V~~~~~~fr~~k~Y~sv~~t~~~~s~l~n~V~~~d~ied~l~~~l~eD~dmPnLl~~H~kl~~ardF~eq~~~~a~e 153 (742)
T COG5173 74 RRNVRVLKGFFRLVKDYRSVKMTCLAHSNLCNVVEFSDRIEDILGTVLTEDIDMPNLLAYHTKLYDARDFGEQLDMYATE 153 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHccHHHHhHHHHHHHhh
Confidence 999999999999999999999999999999888888888888874 45999999999999999999777665 4
Q ss_pred hchHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhcCC-chhhHHHHHHHhhhhhhHHHHHHHHHhhcCccccccc
Q 007292 164 SHKEEVGRLREYFEDVDQIWETFEKTLWGYISNFYKLSKESP-QTLVRALRVVEMQEILDQQLAEEAAEAEGGGVMAAIS 242 (609)
Q Consensus 164 ~~~~d~~~L~~~F~~v~~l~~~f~~~l~~i~~~~l~~~~~~~-~~lv~~~rIie~EE~~D~~~~~~~~~~~~~~~~~~~~ 242 (609)
.+.|+..++.+.|+.++.++..|++.|..+..++++.|+.+. ...+++++|+|.||++|+.... +++
T Consensus 154 ~~~D~~~tv~k~fs~l~~~s~~Fd~lvl~~~~~iie~vksghi~~~~~ifkIve~EE~~De~~~~------------Ird 221 (742)
T COG5173 154 ISHDDYVTVNKAFSTLEKNSLDFDALVLEISEEIIENVKSGHIEAMDKIFKIVEKEEARDELTRK------------IRD 221 (742)
T ss_pred cccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHH------------HHH
Confidence 677788999999999999999999999999999999999975 6889999999999999998753 111
Q ss_pred Cccccccccccc-ccccccchhhccccCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 007292 243 NPRRSAKKSTTA-TISSNSHTQQKLKVQGKGYKDKCYEQIRKAVERRFNKLLTELVFEDLKAALEEARTIGEELADIYDY 321 (609)
Q Consensus 243 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~k~~~~~~i~~sv~~~~~~~~~~~~~~d~~~~Ld~~~~~~~dL~~v~~~ 321 (609)
+.+.+-+.+..+ .+...+-.......+||+||++....|..|+.+.|.+.+.++.+++ ..++++.|+++||..++.+
T Consensus 222 aks~lp~SQD~P~~~~~~gmyr~~~~~~~r~lk~f~i~~i~~sv~e~F~r~r~~yi~d~--sgelnmDfIf~dL~~i~e~ 299 (742)
T COG5173 222 AKSELPKSQDNPVLKEFYGMYRMYATRKTRKLKDFVIKSIEVSVKEKFDRLRNEYIFDN--SGELNMDFIFKDLSFIREN 299 (742)
T ss_pred HHhcCCCcCCCcchHHHHHHHHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHHHHHHhcC--cchhhhHHHHHHHHHHHHH
Confidence 111110111111 1111111233445789999999999999999999999988777643 3355666999999999999
Q ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhHHHHhchhHHhHHhHh-cCCCCccccccCCCcCchhHHH
Q 007292 322 VAPCFPPRYEIFQLMVNLYTERFIQMLRLLSDRANELTNIEILKVTGWVVEYQDNLI-GLGVDESLAQVCSESGAMDPLM 400 (609)
Q Consensus 322 ~~~~FPp~~~I~~~~~~~yh~~l~~~L~~l~~~~~~l~~~~ll~lL~wv~~Y~~~l~-~l~~~~~~l~~ll~~~~~~~L~ 400 (609)
++.||||+|||+.+|...|.+++...+...+ ..++++..+|.++.|+.+|++.++ +||+..++++|.++++.-+.|.
T Consensus 300 i~~~~pp~~NI~~~y~~~YqecL~~L~td~v--~~~~~a~~iL~ii~f~~~y~~t~e~~f~f~~dev~~~l~d~e~g~L~ 377 (742)
T COG5173 300 ISLSFPPFDNILTLYHNNYQECLLKLFTDEV--TERLDAGEILAIIEFVGNYYNTIESKFNFIADEVGGRLLDNETGELL 377 (742)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHHHHHHh--hcCCcchHHHHHHHHHHHHHHHHHHhCCccHHHhcccccCCcchHHH
Confidence 9999999999999999999999999999987 678999999999999999999998 8999999999999988888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh------hcCCCCCCCCCccccCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 007292 401 NSYVERMQATTKKWYLNILDAD------KVQPPKRTEDGKLYTPAAVDLFRILGEQVQIVRENSTDIMLYRIALAIIQVM 474 (609)
Q Consensus 401 ~~Yl~~~~~~~~ew~~~~l~~e------r~~~Pe~d~dG~~~t~~~vdlfqmi~qql~~a~~~~~~~~~~~v~~~~~~~l 474 (609)
.+|+++++.+++||..|+.+.| |+.||+.|+||.|+++|.+.+||||.||+.+++...+...+.-|+..++..|
T Consensus 378 ~~Yt~l~~~Kl~EWv~nl~~~evd~F~~R~~ep~~Dsdg~l~l~Gt~~~fQmitqQ~e~ia~tn~sdvvgiV~~~i~~~~ 457 (742)
T COG5173 378 EKYTKLAQEKLKEWVMNLTRIEVDKFYARNEEPSRDSDGKLVLPGTVSLFQMITQQLEPIAFTNRSDVVGIVFAHITRTI 457 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCCcCccCccHHHHHHHHHHHhhhhhcCCccchhhhhHHHHHHHH
Confidence 9999999999999999998877 6789999999999999999999999999999999998888877888999999
Q ss_pred HHHHHHHHHHhcC-----------CC-CCCchhHHHHHhhhhhhhHHHHHHHHHHhcccCCccccccc--chhHHhhhHH
Q 007292 475 IDFQAAERERLAE-----------PA-PEIGLEPLCAMINNNLRCYDLAMELSTSTMEALPPNYAEQV--NFEDACKGFL 540 (609)
Q Consensus 475 ~~f~~~y~~~l~~-----------~~-~~~~~e~liA~~N~~~~~~e~~~~l~~~~~~~v~~~~~~~i--~~~~~~~~f~ 540 (609)
.+++..|+..+.+ +. +++.++|++|+.||+++|++|+..+..+.-+.++++|.+++ .++...|||.
T Consensus 458 tk~q~~wks~l~ee~~kq~~~npEs~~p~Gl~eyliav~Nd~lK~A~y~~~~~sntfeLitseye~d~~~~lgkTvDgfi 537 (742)
T COG5173 458 TKYQEIWKSNLVEEMDKQFKSNPESSSPAGLEEYLIAVGNDGLKIAQYITSLPSNTFELITSEYENDEVKELGKTVDGFI 537 (742)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccCCcchHHHHHHHHcCCcchHHHHHHhcchhhhhhhhHHHHHHHHHHhcccchhHH
Confidence 9999999876521 12 33779999999999999999999999999899999986654 4778889999
Q ss_pred HHHHHHHHHHHHHHhcCccchHHhhhhcCCCce-------eeeecccccccccccccccccc
Q 007292 541 EVTKEAVRHTLNVIFEDPGVEQLLVKLYQKGKS-------LLKSFTSFLFLDCKYYKSNPYI 595 (609)
Q Consensus 541 ~l~~~a~~~L~~~i~~d~~l~p~~~~lft~~W~-------i~~Ti~dY~~~D~~~~~~~~~~ 595 (609)
++++.+...|+..|+.| |+|++.++|+++|| |+.|++|| +.||+.+|+|+.|
T Consensus 538 ~I~~~s~~~l~~~i~~d--~~pa~~~iF~~~Wy~gS~~k~IvdTl~dy-l~D~~~~M~~~lF 596 (742)
T COG5173 538 DILKASNTFLAEFIIYD--CQPAIDKIFTDEWYGGSVTKVIVDTLQDY-LSDYQNTMSEYLF 596 (742)
T ss_pred HHHhhhhHHHHHHHHHh--hhhhHHHhcCccccccchHHHHHHHHHHH-HHHHHHhcccHHH
Confidence 99999999999999999 99999999999997 99999999 9999999998775
No 2
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=100.00 E-value=5e-67 Score=587.54 Aligned_cols=394 Identities=28% Similarity=0.482 Sum_probs=164.8
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHhhhhhhHHHHHHHHHhhcCcccccccCcccccccccccc
Q 007292 176 FEDVDQIWETFEKTLWGYISNFYKLSKESPQTLVRALRVVEMQEILDQQLAEEAAEAEGGGVMAAISNPRRSAKKSTTAT 255 (609)
Q Consensus 176 F~~v~~l~~~f~~~l~~i~~~~l~~~~~~~~~lv~~~rIie~EE~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (609)
|++|+.+++.|+++||.++++++++++.+|++||+|++|||+||++|+++..... + ...
T Consensus 1 F~~v~~l~~~~~~~l~~i~~~~l~~~~~~~~~lv~~~~Iie~EE~~D~~~~~~~~---~-----------------~~~- 59 (566)
T PF06046_consen 1 FEDVDELSDEFEKQLWSIVRNSLELVRSDPELLVRAVRIIEREERADERAAARQE---A-----------------QSF- 59 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhHHHHHHhh---h-----------------hcc-
Confidence 8999999999999999999999999999999999999999999999999864210 0 000
Q ss_pred cccccch-hhccccCCcchHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHhccccccccccHH
Q 007292 256 ISSNSHT-QQKLKVQGKGYKDKCYEQIRKAVERRFNKLLTELVFE-DLKAALEEARTIGEELADIYDYVAPCFPPRYEIF 333 (609)
Q Consensus 256 ~~~~~~~-~~~~~~~~r~~k~~~~~~i~~sv~~~~~~~~~~~~~~-d~~~~Ld~~~~~~~dL~~v~~~~~~~FPp~~~I~ 333 (609)
...+|.+ ...++++||+||++|+++|+++|+++|+.+...+.++ .+...|+.++|+++||..|++.++|||||+|+||
T Consensus 60 ~~~~f~~~~~~~~~rpr~~r~~~~~~l~~sv~~~~~~~~~~~~~~~~l~~~l~~l~~~~~DL~~v~~~~~~cfPp~~~I~ 139 (566)
T PF06046_consen 60 QAARFRSINQGPPGRPRNWRQKFFEALRESVEERFEQAEEREENKSWLARHLEALRWVLEDLQVVKDDVVPCFPPEYDIF 139 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHHhCcccCCCCChHH
Confidence 1122221 2246789999999999999999999999554444332 3445688888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCChhhHHHHhchhHHhHHhHhcCCCC-ccccccCCCcCchhHHHHHHHHHHHHHHH
Q 007292 334 QLMVNLYTERFIQMLRLLSDRANELTNIEILKVTGWVVEYQDNLIGLGVD-ESLAQVCSESGAMDPLMNSYVERMQATTK 412 (609)
Q Consensus 334 ~~~~~~yh~~l~~~L~~l~~~~~~l~~~~ll~lL~wv~~Y~~~l~~l~~~-~~~l~~ll~~~~~~~L~~~Yl~~~~~~~~ 412 (609)
++|+.+||++++++|+++. .+++++++++.||+|+..|++.|+..++. .+.++|+++++.++.|+++|++.++++|+
T Consensus 140 ~~y~~~YH~~l~~~l~~l~--~~~l~~~~ll~ll~W~~~Y~~~m~~~~l~~~~~l~plL~~~~~~~L~~~Yl~~~~~~~~ 217 (566)
T PF06046_consen 140 NTYVSMYHNALSDHLQELI--SPDLEANDLLSLLSWVNTYPSIMGHPDLAIKEQLGPLLPDEKLEELEDDYLSRIQKKMK 217 (566)
T ss_dssp ------------------------------------------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc--cCCCCHHHHhhheechhhChHhhcCCcccchhhccCCCChhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997 78999999999999977799988766554 67789999999999999999999999999
Q ss_pred HHHHHHHHhhh-----cCCCCCCCCCccccCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007292 413 KWYLNILDADK-----VQPPKRTEDGKLYTPAAVDLFRILGEQVQIVRENSTDIMLYRIALAIIQVMIDFQAAERERLAE 487 (609)
Q Consensus 413 ew~~~~l~~er-----~~~Pe~d~dG~~~t~~~vdlfqmi~qql~~a~~~~~~~~~~~v~~~~~~~l~~f~~~y~~~l~~ 487 (609)
+|+.|+++.|+ +.+|+.|.||+|+|++|+|+||||+||+++|.....+.++..++..|...+.+|+..+...+++
T Consensus 218 eW~~n~l~~E~~~w~~~~~Pe~~~dg~y~t~~~~difqmi~qql~va~~~l~~~v~~~v~~~~~~~l~~~~~~~~~~~~~ 297 (566)
T PF06046_consen 218 EWMDNILEQEVKDWSEEKEPEEDEDGYYHTPLPVDIFQMINQQLDVASESLQGKVLQRVLEELANFLKSYQDAWQEFKEE 297 (566)
T ss_dssp HHHHHHHHHHHHHHHC-S--EE-TTS-EE-HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCCCcCCCCCeecCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999996 6799999999999999999999999999999877777555445544444444454444443322
Q ss_pred C-----------CCCCchhHHHHHhhhhhhhHHHHHHHHHHhcccCCccccccc--chhHHhhhHHHHHHHHHHHHHHHH
Q 007292 488 P-----------APEIGLEPLCAMINNNLRCYDLAMELSTSTMEALPPNYAEQV--NFEDACKGFLEVTKEAVRHTLNVI 554 (609)
Q Consensus 488 ~-----------~~~~~~e~liA~~N~~~~~~e~~~~l~~~~~~~v~~~~~~~i--~~~~~~~~f~~l~~~a~~~L~~~i 554 (609)
+ ..+++.+|+||++|||.+|.++++++..++.+.++++|.+.+ +++.+.++|.++++.|+++|++.|
T Consensus 298 ~~~~~~~~~~~~~~~~~~eyliA~~N~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~i 377 (566)
T PF06046_consen 298 HFKDRSSVKPKENPPGYLEYLIAVANNCLRCRDYVESLEQKFEEKVSQKYMERISSDLEELMDGFDDLAKECCQYLLEEI 377 (566)
T ss_dssp HHHHHHHHHHCC--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccccccccchHHHHHHHhccHHHHHHHHHHHHHhcccccchHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 237889999999999999999999999999999998887654 688999999999999999999999
Q ss_pred hcCccchHHhhhhcCCCce-------eeeecccccccccccccccccc
Q 007292 555 FEDPGVEQLLVKLYQKGKS-------LLKSFTSFLFLDCKYYKSNPYI 595 (609)
Q Consensus 555 ~~d~~l~p~~~~lft~~W~-------i~~Ti~dY~~~D~~~~~~~~~~ 595 (609)
|.| ++|+|++|||++|| |+.|++|| ++||++||.|++|
T Consensus 378 f~D--l~p~~~~Lft~~W~~~~~~~~I~~Ti~dY-~~d~~~~l~~~~~ 422 (566)
T PF06046_consen 378 FND--LKPHFKKLFTKKWYSGEAVDTICATIEDY-LQDFQHYLRPPYF 422 (566)
T ss_dssp HHC--THHHHCTTTSGGGCTS-HHHHHHHHHHHH-HHHHCCCS-HHHH
T ss_pred HHH--hHHHHHHhCcCcCcCcchHHHHHHHHHHH-HHHHHHhccccHH
Confidence 999 99999999999995 99999999 9999999999773
No 3
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.5e-62 Score=528.68 Aligned_cols=499 Identities=29% Similarity=0.439 Sum_probs=420.5
Q ss_pred HHHHHHHHhhcCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007292 12 EAAVREVAKLLTLPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQEC 91 (609)
Q Consensus 12 ~~a~~~v~~ll~~p~~L~kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~ 91 (609)
++|++.+++++++|++|++++.++.+..+++.+++++|+++++.|.++++.|+..+.....+++.
T Consensus 2 ~aal~~v~~ll~~~~~l~~l~~~~~r~~~~~~~~ea~lkt~~~~~~~~v~~~l~~l~~~~~~~~~--------------- 66 (667)
T KOG2286|consen 2 DAALTQVADLLRRPSSLEKLPSIKARAAREKEAVEAQLKTMVQKQYEGVEKGLKNLSTSETDIKG--------------- 66 (667)
T ss_pred CchhhHHHHHHhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH---------------
Confidence 47899999999999999999999999999999999999999999999999999999988887771
Q ss_pred HHHHHchHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHhhhcC---ChhHHHHHHHHHHHHhHHHHHHHHH----hh
Q 007292 92 QTLIENHDQIKLLSNARNNLSTTLKDVEGMMSISVEAAEAKDSLGD---DKELINTYERLTALDGKRRFALAAA----ES 164 (609)
Q Consensus 92 ~~~v~~~~~Ik~l~~~~~nl~~t~~~l~~l~~~~~~~~~~~~~l~~---~~~LL~ah~~L~~Le~~rd~~l~~~----~~ 164 (609)
..+++.++++++.++..+...+..+.. ..+|+.||.+|.+++..|+.++++. ..
T Consensus 67 -------------------~~~~~~n~~~~~n~~~~~~e~~~~~~~~~~~~~l~~a~~~l~dl~~sr~~l~~e~~~~aa~ 127 (667)
T KOG2286|consen 67 -------------------YATAMSNLKHIFNLVADVQEIRMLLDAEKAKDELLLAHDHLLDLEPSRDELLYEVHVMAAE 127 (667)
T ss_pred -------------------HHHHHHHhhhhhhchhHHHHHHHHHhcccccchhhhcCHHHHHHHhhhHHHHHHHHHHhHh
Confidence 334456677777777776666655533 3469999999999999999887764 33
Q ss_pred chHH-HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHhhhhhhHHHHHHHHHhhcCcccccccC
Q 007292 165 HKEE-VGRLREYFEDVDQIWETFEKTLWGYISNFYKLSKESPQTLVRALRVVEMQEILDQQLAEEAAEAEGGGVMAAISN 243 (609)
Q Consensus 165 ~~~d-~~~L~~~F~~v~~l~~~f~~~l~~i~~~~l~~~~~~~~~lv~~~rIie~EE~~D~~~~~~~~~~~~~~~~~~~~~ 243 (609)
...| ..++..+|+.++.+++.|++.+|.++.++++++++ |..+|+++||||+||+.|+++... ++|
T Consensus 128 ~~~D~~~~~~~~f~~v~~~~~ef~K~l~~~~~~~~~~~k~-pe~~v~alrIVe~eE~~D~~~~~~---~~~--------- 194 (667)
T KOG2286|consen 128 AAGDAQTTLRNDFSSVDSASQEFEKNLWGILSRILEMVKS-PEKLVQALRIVEREEIEDEQAMEA---RPG--------- 194 (667)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHhc---ccc---------
Confidence 3444 46677899999999999999999999999999999 999999999999999999998641 111
Q ss_pred cccccccccccccccccchhhccccCCcchHHHHHHHHHHHHHHHHHHHHH-Hhh-hhhH-HHHHHHHH-HHHHHHHHHH
Q 007292 244 PRRSAKKSTTATISSNSHTQQKLKVQGKGYKDKCYEQIRKAVERRFNKLLT-ELV-FEDL-KAALEEAR-TIGEELADIY 319 (609)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~k~~~~~~i~~sv~~~~~~~~~-~~~-~~d~-~~~Ld~~~-~~~~dL~~v~ 319 (609)
+...|+++||+|+. +....+.+..|..+... ... +.-+ ...++..+ |+++||..++
T Consensus 195 ------------------~s~~~~~r~~~~~s--~~~~~r~vatR~~~~~~~~~a~n~~w~~~~~e~~r~~i~EdL~~~~ 254 (667)
T KOG2286|consen 195 ------------------NSSVPNPRPREWKS--LTRMSRTVATRVEGRQGKMRALNKEWQVRLLEVLRFVIREDLRVAK 254 (667)
T ss_pred ------------------cCCCCCCCCchHHH--HHHHhhhHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 11146788999999 55566667777665431 111 1112 22233333 9999999999
Q ss_pred HhccccccccccHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhHHHHhchhH-HhHHhHh-cCCCCccccccCCCcCchh
Q 007292 320 DYVAPCFPPRYEIFQLMVNLYTERFIQMLRLLSDRANELTNIEILKVTGWVV-EYQDNLI-GLGVDESLAQVCSESGAMD 397 (609)
Q Consensus 320 ~~~~~~FPp~~~I~~~~~~~yh~~l~~~L~~l~~~~~~l~~~~ll~lL~wv~-~Y~~~l~-~l~~~~~~l~~ll~~~~~~ 397 (609)
..++|||||+|+||..|++.||++++++++.+. ...++..+++.++.|+. .|++... ........++|.+.++.+.
T Consensus 255 ~~l~~cfpp~~~if~~~l~~Yh~~ls~ll~dl~--s~~l~~~eil~llawV~~~~~~~~l~~~~~~~~~l~p~l~~~~v~ 332 (667)
T KOG2286|consen 255 RVLVPCFPPHYNIFSAYLELYHQALSDLLRDLA--SEALELREILQLLAWVRNEYYTPLLQLNVDVLRALGPLLRPKHVV 332 (667)
T ss_pred HhhcccCCchhHHHHHHHHHHHHHHHHHHHHHh--hccccHHHHHHHHHHHHHHhcChhhhccchhhhhhcCccChhHHH
Confidence 999999999999999999999999999999998 67899999999999999 5776543 3333334478999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-----cCCCCCCCCCccccCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 007292 398 PLMNSYVERMQATTKKWYLNILDADK-----VQPPKRTEDGKLYTPAAVDLFRILGEQVQIVRENSTDIMLYRIALAIIQ 472 (609)
Q Consensus 398 ~L~~~Yl~~~~~~~~ew~~~~l~~er-----~~~Pe~d~dG~~~t~~~vdlfqmi~qql~~a~~~~~~~~~~~v~~~~~~ 472 (609)
.|++.|++..+.++++|+.|+.+.|. +.+|+.|.+|+|+|++|+++|||+.||+++++.++.+... .+...++.
T Consensus 333 ~Ll~~Y~~~~t~n~~ewl~~~~e~e~~~~~~~~~P~rd~~g~~~t~~p~~~fqmi~q~l~~~~~~~~Dl~~-~~~~~~~~ 411 (667)
T KOG2286|consen 333 ALLDLYLERATANMKEWLMNALELEAAAWAKETEPPRDEEGYLYTPGPVIFFQMITQQLQVAAATSSDLSG-KILRSLLS 411 (667)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccccccCcccHHHHHhhHHHHHHHHhhHHHHHH-HHHHHHHH
Confidence 99999999999999999999998884 4799999999999999999999999999999999888777 88889999
Q ss_pred HHHHHHHHHHHHhc-------CCCCCCchhHHHHHhhhhhhhHHHHHHHHHHhcccCCcccccccchhHHhhhHHHHHHH
Q 007292 473 VMIDFQAAERERLA-------EPAPEIGLEPLCAMINNNLRCYDLAMELSTSTMEALPPNYAEQVNFEDACKGFLEVTKE 545 (609)
Q Consensus 473 ~l~~f~~~y~~~l~-------~~~~~~~~e~liA~~N~~~~~~e~~~~l~~~~~~~v~~~~~~~i~~~~~~~~f~~l~~~ 545 (609)
.+..|++.|.+... +.+++++.+|+||++|||++|+++..++.+++ + .+....++|.+++++
T Consensus 412 ~v~~f~~~~~~~~~~~~e~~~~~~~~~l~~y~iA~~N~~~~~a~~~~~~~~~~---------d--~~~~~l~~~~~i~~~ 480 (667)
T KOG2286|consen 412 EVPSFARNYPKAQDEDQESHRREQPEGLREYLIANINNNLKMAMLMVNLKSKY---------D--TLKGLLDGFIEIAKH 480 (667)
T ss_pred HhHHHHHHHHHhHHHHHHhchhcccccHHHHHHHHHhchhHHHHHHHHHHhcc---------c--hhHHHhHHHHHHHHh
Confidence 99999999987531 22456889999999999999999999987765 1 356688999999999
Q ss_pred HHHHHHHHHhcCccchHHhhhhcCCCce-------eeeeccccccccccccccccc
Q 007292 546 AVRHTLNVIFEDPGVEQLLVKLYQKGKS-------LLKSFTSFLFLDCKYYKSNPY 594 (609)
Q Consensus 546 a~~~L~~~i~~d~~l~p~~~~lft~~W~-------i~~Ti~dY~~~D~~~~~~~~~ 594 (609)
++..|++.+|.| |+|+|+++||++|| ||.|++|| +.||+.+|.|+|
T Consensus 481 ~~~~l~e~~~~d--~~~~~~~lf~~~W~~g~~~~~Iv~T~~dy-~~D~~~~~~~~f 533 (667)
T KOG2286|consen 481 GVSGLLEEIFLD--LQPLLNKLFTKEWCAGSVTENIVATLDDY-LPDFKELMGEYF 533 (667)
T ss_pred HHHHHHHHHHHH--HHHHHHHHhhhhhhchhhHHHHHHHHHHH-HHHHHHHhhhHH
Confidence 999999999999 99999999999995 99999999 999999998863
No 4
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-40 Score=351.67 Aligned_cols=522 Identities=15% Similarity=0.202 Sum_probs=429.2
Q ss_pred HHHHHHHhhcCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 007292 13 AAVREVAKLLTLPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQ 92 (609)
Q Consensus 13 ~a~~~v~~ll~~p~~L~kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~ 92 (609)
..+.+++++|+.+.+|..|+.+++++.-+...+|++|.+.|..|-...++|-+.|.+|+..+.++...+.+|++.++.++
T Consensus 20 ~~v~~in~lfp~eqSL~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~eL~~~i~eiks~ae~Te 99 (793)
T KOG2180|consen 20 NFVEYINELFPAEQSLTNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEELFQKIQEIKSVAESTE 99 (793)
T ss_pred hHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHch-HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHhhhc-----CChhHHHHHHHHHH-HHhHHHHHHHHHhhc
Q 007292 93 TLIENH-DQIKLLSNARNNLSTTLKDVEGMMSISVEAAEAKDSLG-----DDKELINTYERLTA-LDGKRRFALAAAESH 165 (609)
Q Consensus 93 ~~v~~~-~~Ik~l~~~~~nl~~t~~~l~~l~~~~~~~~~~~~~l~-----~~~~LL~ah~~L~~-Le~~rd~~l~~~~~~ 165 (609)
.||+++ ++||+++.|++||+++|++++||+|+..++++++.|+. +..++|+|..+|.+ ...+|+
T Consensus 100 ~~V~eiTrdIKqLD~AKkNLTtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai~~ll~~F~~Yk~--------- 170 (793)
T KOG2180|consen 100 AMVQEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPLQAILQLLNHFIAYKS--------- 170 (793)
T ss_pred HHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHHHHHHHHHHHHhcc---------
Confidence 999999 99999999999999999999999999999999999884 44688999988874 344444
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhc-CCc----hhhHHHHHHHhhhhhhHHHHHHHHHhhcCccccc
Q 007292 166 KEEVGRLREYFEDVDQIWETFEKTLWGYISNFYKLSKE-SPQ----TLVRALRVVEMQEILDQQLAEEAAEAEGGGVMAA 240 (609)
Q Consensus 166 ~~d~~~L~~~F~~v~~l~~~f~~~l~~i~~~~l~~~~~-~~~----~lv~~~rIie~EE~~D~~~~~~~~~~~~~~~~~~ 240 (609)
+..+...-+.|+.+-..|..+|...+.+.+.--.. ++. .|-.+|++++.
T Consensus 171 ---v~~I~~Ls~si~~~k~~l~~qi~~df~~~F~~~~~~~~~~~l~~l~daC~v~d~----------------------- 224 (793)
T KOG2180|consen 171 ---VDEIANLSESIDKLKKSLLSQIFQDFKAAFSGGETHEEALLLQKLSDACLVVDA----------------------- 224 (793)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHHHHHH-----------------------
Confidence 55667777889999999999999888887754433 222 34556666652
Q ss_pred ccCcccccccccccccccccchhhccccCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH----HHHHHHHH
Q 007292 241 ISNPRRSAKKSTTATISSNSHTQQKLKVQGKGYKDKCYEQIRKAVERRFNKLLTELVFEDLKAALEEA----RTIGEELA 316 (609)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~k~~~~~~i~~sv~~~~~~~~~~~~~~d~~~~Ld~~----~~~~~dL~ 316 (609)
. .+.+|. +.|+|.+...+.++...|.+++.++.||++ .|+++-|.
T Consensus 225 ------------------------l-epsvre------elIkwf~~qqL~ey~~IF~en~E~a~LDkidrRY~wfKr~L~ 273 (793)
T KOG2180|consen 225 ------------------------L-EPSVRE------ELIKWFCSQQLEEYEQIFRENEEAASLDKLDRRYAWFKRLLR 273 (793)
T ss_pred ------------------------h-CCccHH------HHHHHHHHHHHHHHHHHHhccHhhhhhhhHHHHHHHHHHHHH
Confidence 1 133676 899999999999998888876777788875 59999999
Q ss_pred HHHHhccccccccccHHHHHHHHHHHHHHHHHHHHhh-hcCCCChhhHHHHhchhHHhHHhHh-cCCC-----Cc---cc
Q 007292 317 DIYDYVAPCFPPRYEIFQLMVNLYTERFIQMLRLLSD-RANELTNIEILKVTGWVVEYQDNLI-GLGV-----DE---SL 386 (609)
Q Consensus 317 ~v~~~~~~~FPp~~~I~~~~~~~yh~~l~~~L~~l~~-~~~~l~~~~ll~lL~wv~~Y~~~l~-~l~~-----~~---~~ 386 (609)
...+...|.||++|.|-.+.+..||+.+++.|..|+. ...++++.-++..|+-+.+|++.|. +|+- .. ..
T Consensus 274 ~fe~k~~~iFP~dW~v~~RLt~eFc~~Tr~~L~~Il~~~~~~~~v~lll~Alq~TleFE~~L~kRF~g~~~~~~~~~ns~ 353 (793)
T KOG2180|consen 274 DFEEKWKPIFPADWHVAYRLTIEFCHQTRKQLESILKRRKKEPDVKLLLFALQSTLEFEKFLDKRFSGGTLTGKPEKNSQ 353 (793)
T ss_pred HHHHhccccCCcccchhHHHHHHHHHHHHHHHHHHHHHhhhCccHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccc
Confidence 9999999999999999999999999999999999984 2367999999999999999999987 6741 00 01
Q ss_pred ccc-------CCCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCCC-CCCCccccCchhHHHHHHHHHHHHHHhh
Q 007292 387 AQV-------CSESGAMDPLMNSYVERMQATTKKWYLNILDADKVQ-PPKR-TEDGKLYTPAAVDLFRILGEQVQIVREN 457 (609)
Q Consensus 387 l~~-------ll~~~~~~~L~~~Yl~~~~~~~~ew~~~~l~~er~~-~Pe~-d~dG~~~t~~~vdlfqmi~qql~~a~~~ 457 (609)
..| ...+.++++....|++.....+.+.+.+.+..++.. +|.. ...+-.++|++.|+|+.++..+..+.++
T Consensus 354 ~~~k~~~~f~~~isScFEPhLtlyI~~qek~l~ellek~v~e~~~~~~p~~~~~~~s~vlpSsadlF~~Ykkcltq~~~L 433 (793)
T KOG2180|consen 354 FEPKERFNFEGAISSCFEPHLTLYIESQEKELSELLEKFVSEEKWDGEPKSNTDEESLVLPSSADLFVAYKKCLTQCSEL 433 (793)
T ss_pred cccccccchhhHHHHhcccchhhhhhHHHHHHHHHHHHHHhhhccCCCCCCCcccccccCccHHHHHHHHHHHHHHHHHh
Confidence 000 011246789999999999999999999999888753 3422 4566789999999999999999988887
Q ss_pred hhh-HHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------C----------------CCCchhHHHHHhhhhhhhHH
Q 007292 458 STD-IMLYRIALAIIQVMIDFQAAERERLAEP-----------A----------------PEIGLEPLCAMINNNLRCYD 509 (609)
Q Consensus 458 ~~~-~~~~~v~~~~~~~l~~f~~~y~~~l~~~-----------~----------------~~~~~e~liA~~N~~~~~~e 509 (609)
+.+ ..+.... ..|.+|++.|...+-.+ . ......-+|++.+++.+|..
T Consensus 434 s~n~dpl~~~~----~~f~k~LreYa~kil~~~lP~~t~~s~g~~v~~l~~~e~~~~~~~t~d~l~di~~~lst~e~~~~ 509 (793)
T KOG2180|consen 434 SENNDPLIALL----AVFSKWLREYAQKILLGNLPDTTSSSDGAAVYLLLRIEGAEYCRFTIDQLLDICCILSTAEYCLA 509 (793)
T ss_pred ccCCchHHHHH----HHHHHHHHHHHHHHhhccCCcccccccCchhhhHHHhhhhhhhcccHHHHHHHHHHHHHHHHHHH
Confidence 766 4442332 37899999998653110 0 00124558999999999999
Q ss_pred HHHHHHHHhcccCCcccccccchhHHhhhHHHHHHHHHHHHHHHHhcCccchHHhhhhcCCCceeee-------------
Q 007292 510 LAMELSTSTMEALPPNYAEQVNFEDACKGFLEVTKEAVRHTLNVIFEDPGVEQLLVKLYQKGKSLLK------------- 576 (609)
Q Consensus 510 ~~~~l~~~~~~~v~~~~~~~i~~~~~~~~f~~l~~~a~~~L~~~i~~d~~l~p~~~~lft~~W~i~~------------- 576 (609)
++-++++++++.++..|...++++...+.|..+...+...+++...+. |.|.+..|....|..+.
T Consensus 510 tt~qle~kl~e~~~~~~~~~vs~s~~r~~~~~~~~~s~q~lv~D~e~a--~~~~lt~msk~~~~~l~~vgDQss~v~s~~ 587 (793)
T KOG2180|consen 510 TTIQLEKKLKEIVDASYIKGVSFSEEREVFSSKISVSLQFLVQDLENA--LDPDLTPMSKMQWQNLEGVGDQSSYVSSLN 587 (793)
T ss_pred HHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHHHHh--hCcccChHHHHHHHHhcCccccchhhHHHH
Confidence 999999999999999999999999999999999999999999999998 99999999988894333
Q ss_pred --------ecccccccccccccccccchHHHH--------HHHhhccCC
Q 007292 577 --------SFTSFLFLDCKYYKSNPYICLNFW--------VKLIKCSSI 609 (609)
Q Consensus 577 --------Ti~dY~~~D~~~~~~~~~~~~~~~--------~~~~~~~~~ 609 (609)
++.|- ..+=+.|+.. ||.+++ ..|+||+||
T Consensus 588 ~h~~q~~~~i~~~-~~~~r~~f~~--fc~r~a~~f~~kf~~~l~R~k~~ 633 (793)
T KOG2180|consen 588 FHLSQFVPLIRDA-LALDRKYFAQ--FCVRLAASFIPKFLNVLFRAKPI 633 (793)
T ss_pred HHHHhhhHHHHHH-hccccchHHH--hhHHHHhhcchHHHHHHHHhhhH
Confidence 33343 3333333322 898887 889999985
No 5
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=100.00 E-value=1.5e-30 Score=274.35 Aligned_cols=345 Identities=17% Similarity=0.233 Sum_probs=285.7
Q ss_pred HHHHHHHhhcCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 007292 13 AAVREVAKLLTLPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQ 92 (609)
Q Consensus 13 ~a~~~v~~ll~~p~~L~kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~ 92 (609)
+|+.+||++||+|+||+.|+.+..++..++..+|.+|+..|+.|-.....|-+.|.+++..|++|.+++.+|+..+++++
T Consensus 5 dpv~~in~lfp~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE 84 (383)
T PF04100_consen 5 DPVDYINELFPDEQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESE 84 (383)
T ss_pred CHHHHHHHhCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred HHHHch-HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHhhhcC-----ChhHHHHHHHHHHHHhHHHHHHHHHhhch
Q 007292 93 TLIENH-DQIKLLSNARNNLSTTLKDVEGMMSISVEAAEAKDSLGD-----DKELINTYERLTALDGKRRFALAAAESHK 166 (609)
Q Consensus 93 ~~v~~~-~~Ik~l~~~~~nl~~t~~~l~~l~~~~~~~~~~~~~l~~-----~~~LL~ah~~L~~Le~~rd~~l~~~~~~~ 166 (609)
.+|+++ ++||+|+.||+||+.+|+.|+||+|+...+++++.++.. ..++|.|..+|+ ..|.. .
T Consensus 85 ~~V~~it~dIk~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~--~~F~~---------y 153 (383)
T PF04100_consen 85 QMVQEITRDIKQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELL--EHFKP---------Y 153 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHHHc---------c
Confidence 999999 999999999999999999999999999999999888853 457888888877 33333 2
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhc-C----CchhhHHHHHHHhhhhhhHHHHHHHHHhhcCcccccc
Q 007292 167 EEVGRLREYFEDVDQIWETFEKTLWGYISNFYKLSKE-S----PQTLVRALRVVEMQEILDQQLAEEAAEAEGGGVMAAI 241 (609)
Q Consensus 167 ~d~~~L~~~F~~v~~l~~~f~~~l~~i~~~~l~~~~~-~----~~~lv~~~rIie~EE~~D~~~~~~~~~~~~~~~~~~~ 241 (609)
.++..+......+..+...+..+|...+..++..... + ...|..||.|++.
T Consensus 154 ksi~~I~~L~~~i~~l~~~L~~qI~~df~~~f~~~~~~~~~~~~~~l~~aC~vvd~------------------------ 209 (383)
T PF04100_consen 154 KSIPQIAELSKRIDQLQNELKEQIFEDFEELFGSQGDESPGQSSQQLSDACLVVDA------------------------ 209 (383)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchHhHHHHHHHHHHH------------------------
Confidence 2356778888899999999999999988887622211 2 2457888888873
Q ss_pred cCcccccccccccccccccchhhccccCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH----HHHHHHHHH
Q 007292 242 SNPRRSAKKSTTATISSNSHTQQKLKVQGKGYKDKCYEQIRKAVERRFNKLLTELVFEDLKAALEEA----RTIGEELAD 317 (609)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~k~~~~~~i~~sv~~~~~~~~~~~~~~d~~~~Ld~~----~~~~~dL~~ 317 (609)
+++. .|. +.|.+.+...+.++...|..++..+.||++ .|+++-|..
T Consensus 210 -----------------------L~~~-~r~------~li~wf~~~qL~eY~~iF~~~~e~~~Ld~i~RRy~Wfkr~L~~ 259 (383)
T PF04100_consen 210 -----------------------LGPD-VRE------ELIDWFCNKQLKEYRRIFRENDEAASLDNIDRRYAWFKRLLKN 259 (383)
T ss_pred -----------------------cCch-HHH------HHHHHHHHHHHHHHHHHHcccccccchhhHHHHHHHHHHHHHH
Confidence 1111 333 688899999999998888655556777775 599999999
Q ss_pred HHHhccccccccccHHHHHHHHHHHHHHHHHHHHhh-hcCCCChhhHHHHhchhHHhHHhHh-cCC-CCcc--------c
Q 007292 318 IYDYVAPCFPPRYEIFQLMVNLYTERFIQMLRLLSD-RANELTNIEILKVTGWVVEYQDNLI-GLG-VDES--------L 386 (609)
Q Consensus 318 v~~~~~~~FPp~~~I~~~~~~~yh~~l~~~L~~l~~-~~~~l~~~~ll~lL~wv~~Y~~~l~-~l~-~~~~--------~ 386 (609)
+.+.+..+|||+|+|-...+..||..++++|..++. ...+++++.++..|+-+.+|++.|. +|+ .... .
T Consensus 260 ~e~~~~~iFP~~W~v~~~L~~~Fc~~Tr~dL~~iL~~~~~~~dv~~Ll~aLq~T~~FE~~L~~rF~~~~~~~~~~~~~~e 339 (383)
T PF04100_consen 260 FEEKFANIFPPSWRVPERLCVEFCEITRKDLSEILSKRKSELDVKLLLKALQKTLEFEKELAKRFAGSTDESQEIEKKKE 339 (383)
T ss_pred HHhhccccCCCcCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 999999999999999999999999999999999984 3678999999999999999999987 673 1110 0
Q ss_pred cc----c--CCCcCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007292 387 AQ----V--CSESGAMDPLMNSYVERMQATTKKWYLNILDAD 422 (609)
Q Consensus 387 l~----~--ll~~~~~~~L~~~Yl~~~~~~~~ew~~~~l~~e 422 (609)
.. + -+.+.++++.+..|++...++|.+-+.+.+..+
T Consensus 340 ~~~~~~~f~g~IS~~FepyL~iyv~~qdk~L~~~l~~~~~~~ 381 (383)
T PF04100_consen 340 MKEIAENFKGIISSCFEPYLSIYVDSQDKNLSEKLDKFISEE 381 (383)
T ss_pred ccccccccccchHHhhHhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 00 0 112345677777777878888888887777655
No 6
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=98.79 E-value=0.00012 Score=84.86 Aligned_cols=491 Identities=12% Similarity=0.115 Sum_probs=260.3
Q ss_pred HHHHHHHhhcCCCC---chhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 007292 13 AAVREVAKLLTLPD---QLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQ----TGLESLALSEQMISQLRENFISIE 85 (609)
Q Consensus 13 ~a~~~v~~ll~~p~---~L~kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~----~gl~~L~~a~~~v~~l~~~~~~i~ 85 (609)
++.+|||..|+.-. ..++++.....+..|....-.+++..+......+- +.+..+..-+.++..+++.|..|.
T Consensus 11 D~~~WIN~~~~~~~~~~~~~~~d~~ls~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~ 90 (766)
T PF10191_consen 11 DVKAWINAALKSRSKDEALEKADAHLSSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQ 90 (766)
T ss_pred CHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999998422 35677666777777777777777777766655544 566678888899999999999998
Q ss_pred HHHHHhHHHH-HchHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHhhhcCChhHHHHHHHHHHHHhHHHHHHHHHhh
Q 007292 86 RYCQECQTLI-ENHDQIKLLSNARNNLSTTLKDVEGMMSISVEAAEAKDSLGDDKELINTYERLTALDGKRRFALAAAES 164 (609)
Q Consensus 86 ~~~~~~~~~v-~~~~~Ik~l~~~~~nl~~t~~~l~~l~~~~~~~~~~~~~l~~~~~LL~ah~~L~~Le~~rd~~l~~~~~ 164 (609)
+.....+... +.+..+.+++.+|+++..+.+.|+.=..+..-..++++.+..+. +-.+...|.+++..=. ..+.
T Consensus 91 ~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~EA~~w~~l~~~v~~~~~~~d-~~~~a~~l~~m~~sL~----~l~~ 165 (766)
T PF10191_consen 91 EEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQEADNWSTLSAEVDDLFESGD-IAKIADRLAEMQRSLA----VLQD 165 (766)
T ss_pred HHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHH----HHcC
Confidence 8877665433 34588999999999999999988877777666777777777765 7777777776655322 1222
Q ss_pred ch--HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhcC-CchhhHHHHHHHhhhhhhHHHHHHHHHhhcCcccccc
Q 007292 165 HK--EEVGRLREYFEDVDQIWETFEKTLWGYISNFYKLSKES-PQTLVRALRVVEMQEILDQQLAEEAAEAEGGGVMAAI 241 (609)
Q Consensus 165 ~~--~d~~~L~~~F~~v~~l~~~f~~~l~~i~~~~l~~~~~~-~~~lv~~~rIie~EE~~D~~~~~~~~~~~~~~~~~~~ 241 (609)
.+ ++... .++.+.+.|+..+..-+-.++..-..+ -..++.++..|+++......+..
T Consensus 166 ~pd~~~r~~------~le~l~nrLEa~vsp~Lv~al~~~~~~~~~~~~~if~~i~R~~~l~~~Y~~-------------- 225 (766)
T PF10191_consen 166 VPDYEERRQ------QLEALKNRLEALVSPQLVQALNSRDVDAAKEYVKIFSSIGREPQLEQYYCK-------------- 225 (766)
T ss_pred CCchhHHHH------HHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHcCCHHHHHHHHHH--------------
Confidence 22 12211 133333333333333332222211111 12356666666655444443321
Q ss_pred cCcccccccccccccccccchhhccccCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 007292 242 SNPRRSAKKSTTATISSNSHTQQKLKVQGKGYKDKCYEQIRKAVERRFNKLLTELVFEDLKAALEEARTIGEELADIYDY 321 (609)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~k~~~~~~i~~sv~~~~~~~~~~~~~~d~~~~Ld~~~~~~~dL~~v~~~ 321 (609)
.++...+..|.+.........|.+....|- ++ +..-+..=...
T Consensus 226 --------------------------~r~~~l~~~W~~~~~~~~~~~~~~~L~~fy-d~----------ll~~l~~E~~w 268 (766)
T PF10191_consen 226 --------------------------CRKAPLQRLWQEYCQSDQSQSFAEWLPSFY-DE----------LLSLLHQELKW 268 (766)
T ss_pred --------------------------HHHHHHHHHHHHHhhhccchhHHHHHHHHH-HH----------HHHHHHHHHHH
Confidence 011122222222222221122222222211 11 22222222335
Q ss_pred cccccccccc-HHHHHHHHH---HHHHHHHHHHHhhh-cCCCChhhHHHHhchhHHhHHhHhc-C---CCCcc--cccc-
Q 007292 322 VAPCFPPRYE-IFQLMVNLY---TERFIQMLRLLSDR-ANELTNIEILKVTGWVVEYQDNLIG-L---GVDES--LAQV- 389 (609)
Q Consensus 322 ~~~~FPp~~~-I~~~~~~~y---h~~l~~~L~~l~~~-~~~l~~~~ll~lL~wv~~Y~~~l~~-l---~~~~~--~l~~- 389 (609)
+..+||+++. +...++... .-.+..++...+.. .++.....|+.+.+-+.+|-+.+.. + ..+.+ .+..
T Consensus 269 ~~~vF~~~~~~~~~ll~~~L~~L~PS~~~~l~~al~~~~~~~~L~~L~~l~~~t~~Fa~~l~~~l~~~~~~~~l~~~~~l 348 (766)
T PF10191_consen 269 CSQVFPDESPVLPKLLAETLSALQPSFPSRLSSALKRAGPETKLETLIELYQATEHFARNLEHLLSSLPGESNLSKVEEL 348 (766)
T ss_pred HHHHcCCchhHHHHHHHHHHHhcCccHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHH
Confidence 6789999887 333333321 11122333333321 1122245666676666667665542 1 11110 0100
Q ss_pred --CCCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC-CccccCchhHHHHHHHHHHHHHHhhhhhHHHHHH
Q 007292 390 --CSESGAMDPLMNSYVERMQATTKKWYLNILDADKVQPPKRTED-GKLYTPAAVDLFRILGEQVQIVRENSTDIMLYRI 466 (609)
Q Consensus 390 --ll~~~~~~~L~~~Yl~~~~~~~~ew~~~~l~~er~~~Pe~d~d-G~~~t~~~vdlfqmi~qql~~a~~~~~~~~~~~v 466 (609)
.+. +...++...|-+.....+..-+..+.-.. ++. .| =.-...+...+|.+.++.+++|..++.|.....+
T Consensus 349 ~~al~-~PF~~~q~~Yg~lE~~~L~~~L~~l~~~~----~~~-~d~v~~L~~s~~k~f~lae~Av~RC~~fT~G~~~~~L 422 (766)
T PF10191_consen 349 LQALF-EPFKPYQQRYGELERRFLSAQLSALDLES----AEL-SDAVRRLEESIPKLFGLAEEAVDRCIAFTGGYGVPGL 422 (766)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccCC----CcH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCccHHHH
Confidence 000 12345555555555555555554321100 000 00 0233456678999999999999999998776555
Q ss_pred HHHHHHHHHHHHHHHHHHhc---C----CC--------CC-CchhHHHHHhhhhhhhHHHHHHHHHHhcccCC---ccc-
Q 007292 467 ALAIIQVMIDFQAAERERLA---E----PA--------PE-IGLEPLCAMINNNLRCYDLAMELSTSTMEALP---PNY- 526 (609)
Q Consensus 467 ~~~~~~~l~~f~~~y~~~l~---~----~~--------~~-~~~e~liA~~N~~~~~~e~~~~l~~~~~~~v~---~~~- 526 (609)
+..+-..|..|...|...+. . +. ++ ......+.++..|-.+......++.++...+. +.+
T Consensus 423 l~Ald~~~~~y~~~~~~~l~~lr~~~~~~~~~~~~~~~eDWs~fQ~aL~LL~~~g~l~~rl~~fE~~l~~~l~~~~~~l~ 502 (766)
T PF10191_consen 423 LKALDSIFSQYLSSLTATLRSLRKSCGLDSTATSSASSEDWSLFQNALQLLQTCGELLSRLSQFEQSLRSRLLELASKLL 502 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55555555556555544331 1 10 01 11344455555554444433333333222110 000
Q ss_pred ----------------------c----c----------------------------c-cchhHHhhhHHHHHHHHHHHHH
Q 007292 527 ----------------------A----E----------------------------Q-VNFEDACKGFLEVTKEAVRHTL 551 (609)
Q Consensus 527 ----------------------~----~----------------------------~-i~~~~~~~~f~~l~~~a~~~L~ 551 (609)
. . . ..+......+..+...|.....
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~~~~~l~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~v~ 582 (766)
T PF10191_consen 503 SSSFSSSSDTGEAASGDTRSSSPNPWKGYNYLAASRLAELPNKAEDLQSLSEQASPSFSLLPEARAAVSRLNQQAQDLVF 582 (766)
T ss_pred ccccCCccccccccccccCcccccchHHHHhhccccHHHHHHHHHHHHHhhhccCCccccchHHHHHHHHHHHHHHHHHH
Confidence 0 0 0 0133445666777888888899
Q ss_pred HHHhcCccchHHhhhhcC-CCce
Q 007292 552 NVIFEDPGVEQLLVKLYQ-KGKS 573 (609)
Q Consensus 552 ~~i~~d~~l~p~~~~lft-~~W~ 573 (609)
+.+|.- ++..+..+.+ +.|.
T Consensus 583 d~l~~~--i~~~L~~vp~~~~W~ 603 (766)
T PF10191_consen 583 DVLFSP--IRQQLKSVPSLPSWS 603 (766)
T ss_pred HHHHHH--HHHHHhcCCcCcccc
Confidence 999987 8999999976 6894
No 7
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.0071 Score=66.75 Aligned_cols=121 Identities=14% Similarity=0.213 Sum_probs=81.8
Q ss_pred HHHhhcCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 007292 17 EVAKLLTLPDQLQFIGDMKADYIARQQANDSQLSTMVAE--QIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTL 94 (609)
Q Consensus 17 ~v~~ll~~p~~L~kl~~l~~~~~~~k~s~~~qLk~~v~~--ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~ 94 (609)
.+.++..+-.+++.|+.+-.++..+-+.++.+|.+.++. ++++. .+..|+.....+.-+.....++.........+
T Consensus 22 ~~~eli~d~t~i~qi~~~le~~~~ee~~~~~~L~~lL~q~~~ie~~--~~~~l~r~~~~L~~v~~da~el~~~i~nt~~l 99 (773)
T KOG0412|consen 22 KVGELIRDLTDISQIDLLLERIAREEARVDKDLEALLSQQQTIEGE--NMSALTRSAENLLTVEGDAKELTDAIKNTCVL 99 (773)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhh--HHHHHHHhhhhhhhhhccHHHHHHHHHHHHHH
Confidence 455666666688999999999999999999999999965 45542 22233333333333333333333333333334
Q ss_pred HHch-HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHhhhcCCh
Q 007292 95 IENH-DQIKLLSNARNNLSTTLKDVEGMMSISVEAAEAKDSLGDDK 139 (609)
Q Consensus 95 v~~~-~~Ik~l~~~~~nl~~t~~~l~~l~~~~~~~~~~~~~l~~~~ 139 (609)
-+.. ..|+.++.++.-+..|+..++.+..+..-.+-+...++...
T Consensus 100 Ae~Vs~kVr~lDla~~Rv~~clq~v~dvrdlk~C~~gv~~Al~seD 145 (773)
T KOG0412|consen 100 AETVSGKVRALDLAQNRVNECLQRVDDVRDLKNCIEGVDTALESED 145 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4455 78999999999999999999988887776666667776554
No 8
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=97.95 E-value=0.00071 Score=76.53 Aligned_cols=208 Identities=13% Similarity=0.188 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHH-HHHHHHHHHHHHhcccccccccc-HHHHHHHHHHHHHHHHHHH
Q 007292 276 KCYEQIRKAVERRFNKLLTELV---FEDLKAALEEA-RTIGEELADIYDYVAPCFPPRYE-IFQLMVNLYTERFIQMLRL 350 (609)
Q Consensus 276 ~~~~~i~~sv~~~~~~~~~~~~---~~d~~~~Ld~~-~~~~~dL~~v~~~~~~~FPp~~~-I~~~~~~~yh~~l~~~L~~ 350 (609)
++-.-|+.|++.-|........ ..+....|-.+ +.+..-...-.+...|.+..... ...+-+...|.+....|+.
T Consensus 384 ~ie~YIrsSi~~Af~~~~~~~~~~~~~~~~~~L~~LA~ei~~la~~e~~~FsPiLk~whP~a~~VAa~~LH~~Yg~~Lk~ 463 (677)
T PF05664_consen 384 RIESYIRSSIKAAFARMASSVDSRSDSEPSHVLAQLAKEIKELAKKEKEVFSPILKRWHPNAAGVAAATLHSCYGNELKQ 463 (677)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcccccchHHHHHHHHHHHHHHHHhHHhcCchhcccCchHHHHHHHHHHHHHHHHHHH
Confidence 3444466666666654321111 11222223332 13333333445556677654332 3344456899999999999
Q ss_pred HhhhcCCCChhhHHHHhchhHHhHHhHhcC-CCCcc--------ccccCCCcCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 007292 351 LSDRANELTNIEILKVTGWVVEYQDNLIGL-GVDES--------LAQVCSESGAMDPLMNSYVERMQATTKKWYLNILDA 421 (609)
Q Consensus 351 l~~~~~~l~~~~ll~lL~wv~~Y~~~l~~l-~~~~~--------~l~~ll~~~~~~~L~~~Yl~~~~~~~~ew~~~~l~~ 421 (609)
++.....|++ +.+.+|.=..++++.|..+ ..+.+ .+.|.--+..+..++..|+....+++.+|+++++++
T Consensus 464 ~L~~~~~LT~-d~v~VL~aA~~LEk~Lvq~~~~~~edggk~~~rem~Py~vE~~i~~lv~~Wi~~~~~~l~ewv~ra~~q 542 (677)
T PF05664_consen 464 FLSGVTHLTP-DVVEVLQAADKLEKALVQMVSVDCEDGGKSLIREMPPYEVESLISNLVKRWIQEQLERLNEWVDRAIKQ 542 (677)
T ss_pred HHcccccCCH-HHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9853334443 4557777777777655421 11111 122322235667899999999999999999999999
Q ss_pred hhcCCCCCCCCCccccCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 007292 422 DKVQPPKRTEDGKLYTPAAVDLFRILGEQVQIVRENSTDIMLYRIALAIIQVMIDFQAAERERLAEP 488 (609)
Q Consensus 422 er~~~Pe~d~dG~~~t~~~vdlfqmi~qql~~a~~~~~~~~~~~v~~~~~~~l~~f~~~y~~~l~~~ 488 (609)
|..+ |. .+...++++.||||.|++|.++.--.+.-+... .++..++..+...+..|-..++..
T Consensus 543 E~W~-P~--S~~e~hs~SvVEvfri~~eTvd~ff~L~~~~~~-~~l~~L~~gld~~lq~Y~~~v~~~ 605 (677)
T PF05664_consen 543 EKWN-PR--SKEERHSPSVVEVFRIFNETVDQFFQLPWPMHA-DFLQALSKGLDKALQRYCEKVEQS 605 (677)
T ss_pred ccCC-cC--CCCCCCcchHHHHHHHHHHHHHHHHcCCCCCch-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9875 43 245778999999999999999997766554333 567778888888999998877543
No 9
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=97.02 E-value=0.96 Score=51.58 Aligned_cols=125 Identities=12% Similarity=0.125 Sum_probs=83.9
Q ss_pred chhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHch-HHHHHHH
Q 007292 27 QLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLIENH-DQIKLLS 105 (609)
Q Consensus 27 ~L~kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~-~~Ik~l~ 105 (609)
+-+.+.....++.++...+.+++.+.+++........+....+....+..+..++.++.+...+.. ...++ ....++.
T Consensus 8 ~~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~-i~~~l~~a~~e~~ 86 (593)
T PF06248_consen 8 SKEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENE-IQPQLRDAAEELQ 86 (593)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccch-hHHHHHHHHHHHH
Confidence 445788888999999999999999999988888777776666666666666666655543322221 11222 2233333
Q ss_pred HHHHH---HHHHHHHHhhhhchhHHHHHHHhhhcCChhHHHHHHHHHHHHh
Q 007292 106 NARNN---LSTTLKDVEGMMSISVEAAEAKDSLGDDKELINTYERLTALDG 153 (609)
Q Consensus 106 ~~~~n---l~~t~~~l~~l~~~~~~~~~~~~~l~~~~~LL~ah~~L~~Le~ 153 (609)
..++. ....+..+++|..+.+..+..+..+.++. ++.|-..|.+++.
T Consensus 87 ~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~-~~~Aa~~L~~~~~ 136 (593)
T PF06248_consen 87 ELKRELEENEQLLEVLEQLQEIDELLEEVEEALKEGN-YLDAADLLEELKS 136 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHH
Confidence 33333 33556778888888888888877777766 7777777776655
No 10
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=1.1 Score=50.83 Aligned_cols=123 Identities=10% Similarity=0.158 Sum_probs=104.8
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHchHHHHHHHHHH
Q 007292 30 FIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQEC-QTLIENHDQIKLLSNAR 108 (609)
Q Consensus 30 kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~-~~~v~~~~~Ik~l~~~~ 108 (609)
+..++..++.....+-+.+|-.....|.++--.++..|...+.++++|+..+.+.+...+++ ..++...+++.+.....
T Consensus 45 ~~~~~~e~Le~~ir~~d~EIE~lcn~hyQdFidsIdEL~~Vr~daq~Lks~vsd~N~rLQ~~g~eLiv~~e~lv~~r~~~ 124 (800)
T KOG2176|consen 45 QHKPVMEKLENRIRNHDKEIEKLCNFHYQDFIDSIDELLKVRGDAQKLKSQVSDTNRRLQESGKELIVKKEDLVRCRTQS 124 (800)
T ss_pred CcchHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666667777788899999999999999999999999999999999999999888876 66777779999999999
Q ss_pred HHHHHHHHHHhhhhchhHHHHHHHhhhcCChhHHHHHHHHHHHHh
Q 007292 109 NNLSTTLKDVEGMMSISVEAAEAKDSLGDDKELINTYERLTALDG 153 (609)
Q Consensus 109 ~nl~~t~~~l~~l~~~~~~~~~~~~~l~~~~~LL~ah~~L~~Le~ 153 (609)
+|++.++..++.=..+-+-+.+.++.+.+.. ..+|.+.+-.||.
T Consensus 125 rnit~ai~~l~~Cl~vLEl~sK~~e~~s~kq-yy~aLktle~lE~ 168 (800)
T KOG2176|consen 125 RNITEAIELLTLCLPVLELYSKLQEQMSEKQ-YYPALKTLESLEK 168 (800)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHH
Confidence 9999999999988877778888888888877 7777777777766
No 11
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=96.87 E-value=0.041 Score=50.25 Aligned_cols=101 Identities=15% Similarity=0.201 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHch-HHHHHH---H
Q 007292 30 FIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLIENH-DQIKLL---S 105 (609)
Q Consensus 30 kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~-~~Ik~l---~ 105 (609)
..+.-..++.+.+..++..|+..|..+-++...++..-+.+...|++.++++..+++..+++...+..= +.++++ +
T Consensus 37 g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s 116 (142)
T PF04048_consen 37 GRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQEAKSLLGCRREELKELWQRS 116 (142)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 477788899999999999999999999999999999999999999999999999999999987777655 777777 4
Q ss_pred HHHHHHHHHHHHHhhhhchhHHHHH
Q 007292 106 NARNNLSTTLKDVEGMMSISVEAAE 130 (609)
Q Consensus 106 ~~~~nl~~t~~~l~~l~~~~~~~~~ 130 (609)
..++..-.++..++.+..+|+.++.
T Consensus 117 ~~~~~mi~iL~~Ie~l~~vP~kie~ 141 (142)
T PF04048_consen 117 QEYKEMIEILDQIEELRQVPDKIES 141 (142)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 4555555666777777888887764
No 12
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=96.86 E-value=0.3 Score=50.37 Aligned_cols=137 Identities=13% Similarity=0.148 Sum_probs=107.9
Q ss_pred HHHHHhhcCCC-CchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 007292 15 VREVAKLLTLP-DQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQT 93 (609)
Q Consensus 15 ~~~v~~ll~~p-~~L~kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~ 93 (609)
..+.=+.++.. .+++.++....++......|+.+|...|...-++--.|+..+.+.+.++...-..+...++....+..
T Consensus 16 ~~~~L~~l~~~~~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~~ 95 (291)
T PF10475_consen 16 VRYELEKLPEDELDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLKSADE 95 (291)
T ss_pred hHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33433445555 56778999999999999999999999999999999999998888888888888888888877777765
Q ss_pred HHHc-hHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHhhhcCChhHHHHHHHHHHHH
Q 007292 94 LIEN-HDQIKLLSNARNNLSTTLKDVEGMMSISVEAAEAKDSLGDDKELINTYERLTALD 152 (609)
Q Consensus 94 ~v~~-~~~Ik~l~~~~~nl~~t~~~l~~l~~~~~~~~~~~~~l~~~~~LL~ah~~L~~Le 152 (609)
.+.. =-.|-.....++|+..+...|+.+..+.+....++.++.++. ...|..-+.+.+
T Consensus 96 ~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~d-y~~Al~li~~~~ 154 (291)
T PF10475_consen 96 NLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGD-YPGALDLIEECQ 154 (291)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Confidence 5333 244557788899999999999999999998888888888776 555555544443
No 13
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=95.46 E-value=6.4 Score=45.07 Aligned_cols=110 Identities=14% Similarity=0.212 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCChhhHHHHhchhHHhHHhHhc-CCCCccccccCCCcCchhHHHHHHHHHHHHH
Q 007292 332 IFQLMVNLYTERFIQMLRLLSDRANELTNIEILKVTGWVVEYQDNLIG-LGVDESLAQVCSESGAMDPLMNSYVERMQAT 410 (609)
Q Consensus 332 I~~~~~~~yh~~l~~~L~~l~~~~~~l~~~~ll~lL~wv~~Y~~~l~~-l~~~~~~l~~ll~~~~~~~L~~~Yl~~~~~~ 410 (609)
+.+.....-++-+..++.+++ ..+.++..++.+.+-+.-|...+.+ +|-+.. + ...+..|.+.-.+.+...
T Consensus 304 lld~i~~~l~rplk~RvEQvi--~se~~~i~~yki~~LL~fY~~~~~k~i~~~s~-L-----~~tl~~L~~~a~~~f~~~ 375 (618)
T PF06419_consen 304 LLDRILEGLCRPLKIRVEQVI--SSEEDPITLYKIANLLSFYQMTFSKLIGEDSS-L-----IETLKELQDLAQKKFFSS 375 (618)
T ss_pred HHHHHHHHHhHHHHHHHHHHH--HcCCCccHHHHHHHHHHHHHHHHHHHcCCCch-H-----HHHHHHHHHHHHHHHHHH
Confidence 344445666778888888888 5677888888888887667777775 453321 1 145678888888888888
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCccccCchhHHHHHHHHHHHH
Q 007292 411 TKKWYLNILDADKVQPPKRTEDGKLYTPAAVDLFRILGEQVQI 453 (609)
Q Consensus 411 ~~ew~~~~l~~er~~~Pe~d~dG~~~t~~~vdlfqmi~qql~~ 453 (609)
++.+..++...... +|..| ..-.+.-.+..+.+.+-++.
T Consensus 376 l~~~~~~l~~~~~~-~~~~D---L~PP~~l~d~l~~L~~il~~ 414 (618)
T PF06419_consen 376 LRDHVAKLLRSAPE-PPPAD---LSPPEWLIDFLSLLREILDV 414 (618)
T ss_pred HHHHHHHHHhhCCC-CCCCC---CCCCHHHHHHHHHHHHHHHH
Confidence 88888888766222 23222 34445556777777777766
No 14
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=94.15 E-value=1.2 Score=49.65 Aligned_cols=259 Identities=12% Similarity=0.129 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHhccccccc----cccHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhHHHHhchhHHhHHhHh-cCCCCc
Q 007292 310 TIGEELADIYDYVAPCFPP----RYEIFQLMVNLYTERFIQMLRLLSDRANELTNIEILKVTGWVVEYQDNLI-GLGVDE 384 (609)
Q Consensus 310 ~~~~dL~~v~~~~~~~FPp----~~~I~~~~~~~yh~~l~~~L~~l~~~~~~l~~~~ll~lL~wv~~Y~~~l~-~l~~~~ 384 (609)
|+.+-...+...+.|.+-+ ++++...|+..--..+++-+...+. ...-+..-+.-++.=+..|.+.|. .++.+.
T Consensus 40 ~~~~~~~~l~~~iq~~~~~~~~~~~~~~~~fi~~ll~~~~~Kl~~~l~-~~~~~~~~l~HlI~e~~~FD~~L~~~~~y~~ 118 (494)
T PF04437_consen 40 WIRDHRDFLEECIQPLLDENGLTYIDAREEFIRGLLPPVREKLRSDLP-ELLDDPSLLSHLIDEILSFDKELRSLYGYPG 118 (494)
T ss_dssp HHHHH---HHHHHHHH-BGGTB-HHHHHHHHHHHHHHHHHHHHHHHH---TTS-HHHHHHHHHHHHHHHHHHHHTS---S
T ss_pred HHHHhhHHHHHHcCHHHHhcCCccccHHHHHHHHHHHHHHHHHHHHHH-hhccChhHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4444434444555666655 4555555555555555555554431 122344556666777777888887 454433
Q ss_pred cccccCCCcCch--hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-----CCCCCccccCchhHHHHHHHHHHHHHHhh
Q 007292 385 SLAQVCSESGAM--DPLMNSYVERMQATTKKWYLNILDADKVQPPK-----RTEDGKLYTPAAVDLFRILGEQVQIVREN 457 (609)
Q Consensus 385 ~~l~~ll~~~~~--~~L~~~Yl~~~~~~~~ew~~~~l~~er~~~Pe-----~d~dG~~~t~~~vdlfqmi~qql~~a~~~ 457 (609)
++.+. ...++ +...+.|++..++--.+=++.++..+..-.++ .+.+..-.|.++..+..++..-.+....+
T Consensus 119 d~~~~--~~~vL~~~~~~~~Wl~~E~~~a~~r~~~i~~s~~aw~~~~~~~~~~~~~~k~t~~A~~~~~Ll~~it~ry~~L 196 (494)
T PF04437_consen 119 DWQGS--TLDVLCQPDWFDRWLNAEKEFALERFDEIISSPDAWQIDYDDVEADSDELKPTKSAERFVKLLESITDRYRPL 196 (494)
T ss_dssp --------CGGGS-HHHHHHHHHHHHHHHHHHHH---------------HTTSSGGGG-GGHHHHHHHHHHHHHHHHHHH
T ss_pred ccchh--HHHHhcchHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhccccCCchhhcchHHHHHHHHHHHHHHHHHhhc
Confidence 21111 11222 56778888877776666666666655211111 24455667888888888888877776554
Q ss_pred hhh---HHHH-HHHHHHHHHHHHHHHHHHHHhcC-----C--CCCCchhHHHHHhhhhhhhHHHHHHHHHHhc-------
Q 007292 458 STD---IMLY-RIALAIIQVMIDFQAAERERLAE-----P--APEIGLEPLCAMINNNLRCYDLAMELSTSTM------- 519 (609)
Q Consensus 458 ~~~---~~~~-~v~~~~~~~l~~f~~~y~~~l~~-----~--~~~~~~e~liA~~N~~~~~~e~~~~l~~~~~------- 519 (609)
..- ..+. ++...++..+...+.+..+..+. . ....+++.+|.+.|++.++.....+..+.+-
T Consensus 197 ~~~~~rl~Fl~~iql~lld~~~~~L~~~~~~~~~~~s~~~~~~~~~~l~~l~~~lnsa~yi~~~L~eW~e~~~Flq~~~~ 276 (494)
T PF04437_consen 197 PSLSHRLRFLIDIQLPLLDDYHDRLSQSLEAFESSTSTLASLSGDSGLERLCKILNSANYIENVLREWSEDVFFLQMRAK 276 (494)
T ss_dssp HH---GG--GHHHHHHHHHHTHHHHHHHHHHHHHT----SCEEHHHHHHHHHHHHHHHHHHHHHHHHHCTSHHHH-----
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCeeehhhcc
Confidence 432 2111 22221222222212211111111 1 1224578999999999999987766433210
Q ss_pred cc----------CCcccc-cccchhHHhhhHHHHHHHHHHHHHHHHhcCccchHHhhhhcC-CCce
Q 007292 520 EA----------LPPNYA-EQVNFEDACKGFLEVTKEAVRHTLNVIFEDPGVEQLLVKLYQ-KGKS 573 (609)
Q Consensus 520 ~~----------v~~~~~-~~i~~~~~~~~f~~l~~~a~~~L~~~i~~d~~l~p~~~~lft-~~W~ 573 (609)
.. .+.... +..-|+++...|..+.+.+...+++.+..+ ++..++.-++ .+|.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~siFde~i~~y~~l~~~~~~~iv~~v~~~--~k~~lk~Y~k~~~W~ 340 (494)
T PF04437_consen 277 ESESSNNSLEDIANETSSEEGSIFDETISAYEKLRKRMLESIVDRVVKE--FKASLKAYFKRSQWS 340 (494)
T ss_dssp -------HHHHHHHHHTT--S-TTHHHHHHHHHHHTHHHHHHHHHHHHH--HHHHTHHHHT--GGG
T ss_pred chhhcccccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCccCCC
Confidence 00 000000 011278889999999999999999999999 9999999988 9994
No 15
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=93.07 E-value=13 Score=39.06 Aligned_cols=71 Identities=11% Similarity=0.138 Sum_probs=41.0
Q ss_pred chhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHHHHHc
Q 007292 27 QLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSE-------QMISQLRENFISIERYCQECQTLIEN 97 (609)
Q Consensus 27 ~L~kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~-------~~v~~l~~~~~~i~~~~~~~~~~v~~ 97 (609)
+++.+..-..++..+.++++.+|.+.........-..-+.+.... ..+..+...+.+..+.|.......++
T Consensus 8 ~l~~L~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~ 85 (338)
T PF04124_consen 8 SLESLFSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQK 85 (338)
T ss_pred CHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777888888889999888887655544433333333333 34444444444444555444433333
No 16
>PF15469 Sec5: Exocyst complex component Sec5
Probab=93.06 E-value=8.3 Score=36.62 Aligned_cols=136 Identities=14% Similarity=0.267 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhHHHHHch-HHHH---HHHHHHHHHHHHHH
Q 007292 47 SQLSTMVAEQIEQAQTGLESLALSEQMISQLREN------FISIERYCQECQTLIENH-DQIK---LLSNARNNLSTTLK 116 (609)
Q Consensus 47 ~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~------~~~i~~~~~~~~~~v~~~-~~Ik---~l~~~~~nl~~t~~ 116 (609)
.+|++.|++..+..-.+...|.....++...+.. +..+.+...++....... ..+- +-...-++.-..++
T Consensus 2 ~~lk~LV~~Nf~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l~ 81 (182)
T PF15469_consen 2 EDLKSLVKENFDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNEASSKANSVFKPLLERREKADKLRNALEFLQ 81 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 3566677666666665666666555555433322 333333333322222211 2211 11222233334467
Q ss_pred HHhhhhchhHHHHHHHhhhcCC--hhHHHHHHHHHHH-HhHHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 007292 117 DVEGMMSISVEAAEAKDSLGDD--KELINTYERLTAL-DGKRRFALAAAESHKEEVGRLREYFEDVDQIWETFEKTLWGY 193 (609)
Q Consensus 117 ~l~~l~~~~~~~~~~~~~l~~~--~~LL~ah~~L~~L-e~~rd~~l~~~~~~~~d~~~L~~~F~~v~~l~~~f~~~l~~i 193 (609)
..+.|+.+|..+.+ .+..+ .+++.-|.+...+ +..+ .....+...|..|+.+.+.|...+|.-
T Consensus 82 r~~flF~LP~~L~~---~i~~~dy~~~i~dY~kak~l~~~~~-----------~~~~vf~~v~~eve~ii~~~r~~l~~~ 147 (182)
T PF15469_consen 82 RNRFLFNLPSNLRE---CIKKGDYDQAINDYKKAKSLFEKYK-----------QQVPVFQKVWSEVEKIIEEFREKLWEK 147 (182)
T ss_pred HHHHHHHhHHHHHH---HHHcCcHHHHHHHHHHHHHHHHHhh-----------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999987543 33332 3344444433322 1111 135678889999999999999999985
Q ss_pred HHH
Q 007292 194 ISN 196 (609)
Q Consensus 194 ~~~ 196 (609)
+.+
T Consensus 148 L~~ 150 (182)
T PF15469_consen 148 LLS 150 (182)
T ss_pred HhC
Confidence 543
No 17
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=92.36 E-value=27 Score=40.80 Aligned_cols=59 Identities=12% Similarity=0.285 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhccccccccccHHHHHHH-HHHHHHHHHHHHHhhhcCCCChhhHHHHhch
Q 007292 311 IGEELADIYDYVAPCFPPRYEIFQLMVN-LYTERFIQMLRLLSDRANELTNIEILKVTGW 369 (609)
Q Consensus 311 ~~~dL~~v~~~~~~~FPp~~~I~~~~~~-~yh~~l~~~L~~l~~~~~~l~~~~ll~lL~w 369 (609)
+...+..-...+..+||+...|...|+. .|+..+..++..+++...+.+....+..+.-
T Consensus 200 i~~~i~~e~~iI~~VFp~~~~Vm~~fiervf~~~I~~~i~~lL~~a~~~s~~~YLr~l~~ 259 (710)
T PF07393_consen 200 IRDVINEESKIIDRVFPNPEPVMQKFIERVFEQVIQEYIESLLEEASSISTLAYLRTLHG 259 (710)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 3333444444567899999999999995 9999999999999864344455555555544
No 18
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=92.34 E-value=7.1 Score=35.09 Aligned_cols=110 Identities=17% Similarity=0.155 Sum_probs=77.3
Q ss_pred HHHHHHhhcC----CCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007292 14 AVREVAKLLT----LPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQ 89 (609)
Q Consensus 14 a~~~v~~ll~----~p~~L~kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~ 89 (609)
|..+.+.++. ..++=..+..-..++..-...++.+|.+.|.+.-+.-=.-...+..+...++.++..+..+..-+.
T Consensus 10 ~~~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~ 89 (132)
T PF10392_consen 10 PVQFANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYE 89 (132)
T ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555 222334688888899999999999999999877666655666667777777788888877777666
Q ss_pred HhH-HHHHchHHHHHHHHHHHHHHHHHHHHhhhhc
Q 007292 90 ECQ-TLIENHDQIKLLSNARNNLSTTLKDVEGMMS 123 (609)
Q Consensus 90 ~~~-~~v~~~~~Ik~l~~~~~nl~~t~~~l~~l~~ 123 (609)
... ..+.-|+.|+....+=+|+-.|...|.+...
T Consensus 90 RL~~eV~~Py~~~~~~~~~L~rl~~t~~LLR~~~r 124 (132)
T PF10392_consen 90 RLRSEVIEPYEKIQKLTSQLERLHQTSDLLRSVSR 124 (132)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 664 4445677777777777777777666665433
No 19
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=91.38 E-value=3.3 Score=34.03 Aligned_cols=74 Identities=15% Similarity=0.195 Sum_probs=50.1
Q ss_pred HHHHHHhhcCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007292 14 AVREVAKLLTLPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYC 88 (609)
Q Consensus 14 a~~~v~~ll~~p~~L~kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~ 88 (609)
|-.++.++|++.. +..|..+.+++.+++...+..|+..|.......=.+...+.....++.+++..+..+...+
T Consensus 8 ~~~~~~~~l~~~s-~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~ 81 (87)
T PF08700_consen 8 VDEYFKDLLKNSS-IKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSI 81 (87)
T ss_pred HHHHHHHHHhhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457778888765 8899999999999999999999999966544443344444444444444444444444433
No 20
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.35 E-value=41 Score=39.13 Aligned_cols=108 Identities=15% Similarity=0.236 Sum_probs=81.9
Q ss_pred cCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHch-HH
Q 007292 22 LTLPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLIENH-DQ 100 (609)
Q Consensus 22 l~~p~~L~kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~-~~ 100 (609)
+-..++-+-++.-+.++.....+-++.|...|..+-+...+|+..-.++...|...++++..++.-...+...+.-= +.
T Consensus 39 L~~Se~~e~re~ek~~Led~Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~i~s~It~~rerI~~vK~~L~~~k~ll~~~rde 118 (982)
T KOG3691|consen 39 LVGSEDTEPRETEKERLEDSYKEFGAALQELVHTHKQDFTTGISSYGEISSGITNCRERIHNVKNNLEACKELLNTRRDE 118 (982)
T ss_pred hccCCcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 33455556666667777777777799999999999999999999999999999999999999999988888888644 67
Q ss_pred HHHHHHHHHHHHHHH---HHHhhhhchhHHHH
Q 007292 101 IKLLSNARNNLSTTL---KDVEGMMSISVEAA 129 (609)
Q Consensus 101 Ik~l~~~~~nl~~t~---~~l~~l~~~~~~~~ 129 (609)
++++-.--.+...++ ..++.+..+|+.++
T Consensus 119 Lqklw~~~~q~K~Vi~vL~eieEl~qvPqkie 150 (982)
T KOG3691|consen 119 LQKLWAENSQYKKVIEVLKEIEELRQVPQKIE 150 (982)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 888755444444444 45555556665543
No 21
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.05 E-value=44 Score=39.02 Aligned_cols=117 Identities=12% Similarity=0.182 Sum_probs=83.2
Q ss_pred CCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 007292 24 LPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLES-------LALSEQMISQLRENFISIERYCQECQTLIE 96 (609)
Q Consensus 24 ~p~~L~kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~-------L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~ 96 (609)
.+..+..=..+..++.--..-||..|...+...-+.--.++.. +.++...|+++++++..|+..+ +.
T Consensus 234 ~~~~~~~~~~LQekLs~yLDvVE~~La~eIs~~SdsFfha~~~~~~Lq~~~~d~~~~vk~Lre~i~~vd~~~------~~ 307 (951)
T KOG2115|consen 234 QAERLEANSALQEKLSHYLDVVELHLAQEISKRSDSFFHAMTSLHNLQKELRDTMSEVKELRENIKEVDAEN------VR 307 (951)
T ss_pred ChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH
Confidence 3455667778888888888899998888876655554444443 4555556666666666666443 34
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHhhhcCChhHHHHHHH
Q 007292 97 NHDQIKLLSNARNNLSTTLKDVEGMMSISVEAAEAKDSLGDDKELINTYER 147 (609)
Q Consensus 97 ~~~~Ik~l~~~~~nl~~t~~~l~~l~~~~~~~~~~~~~l~~~~~LL~ah~~ 147 (609)
.-..|-++..++.|+......|.-+..+.+.-.....++.+.. +..|-..
T Consensus 308 ~s~~Ile~~~~r~n~~kL~~kL~~i~~V~~~q~~vq~ll~~~d-~~~ALdl 357 (951)
T KOG2115|consen 308 KSIKILELALTRKNVEKLLQKLRLIATVHQAQSTVQLLLSTQD-FVGALDL 357 (951)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccc-HHHHHHH
Confidence 5577888899999999999999999998888887877777665 4444433
No 22
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.66 E-value=28 Score=38.87 Aligned_cols=184 Identities=13% Similarity=0.204 Sum_probs=102.1
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHhhh--c----CCCChhhHHHHhchhHH-hHHhHhcCCCCccccccCCCcCch
Q 007292 324 PCFPPRYEIFQLMVNLYTERFIQMLRLLSDR--A----NELTNIEILKVTGWVVE-YQDNLIGLGVDESLAQVCSESGAM 396 (609)
Q Consensus 324 ~~FPp~~~I~~~~~~~yh~~l~~~L~~l~~~--~----~~l~~~~ll~lL~wv~~-Y~~~l~~l~~~~~~l~~ll~~~~~ 396 (609)
+-||.+.||-+.-++..-..+.+.++-.++. . ...+--.+..-+.|..+ |-.+|-.|. +.++ -. +.-+
T Consensus 668 nqfpqelnvgk~saevmw~lfaqdmk~aleeh~k~~~cksadymnl~fkvk~ly~eyv~dlp~~k---~~vp-ey-pawf 742 (1283)
T KOG1011|consen 668 NQFPQELNVGKLSAEVMWSLFAQDMKYALEEHAKKKLCKSADYMNLHFKVKWLYNEYVADLPTYK---SSVP-EY-PAWF 742 (1283)
T ss_pred hhChhhhccccchHHHHHHHHHHHHHHHHHHHhhhccccCcchhheeeehhhhHHHHHhhchhhh---ccCC-Cc-hHHH
Confidence 4488888887776665444555555433220 1 12333334444556544 444443221 1111 01 1235
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCCCCCCCccccCchhHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHH
Q 007292 397 DPLMNSYVERMQATTKKWYLNILDADKVQ-PPKRTEDGKLYTPAAVDLFRILGEQVQIVRENST--DIMLYRIALAIIQV 473 (609)
Q Consensus 397 ~~L~~~Yl~~~~~~~~ew~~~~l~~er~~-~Pe~d~dG~~~t~~~vdlfqmi~qql~~a~~~~~--~~~~~~v~~~~~~~ 473 (609)
+++.-+|+.--.+--.+++.++++.++.. =|. .++...++-+-+|+|.-+++.++....... ..+.......+.+.
T Consensus 743 ~pfv~qwldenee~s~dflrga~e~dkkdgf~q-tseha~fs~svvdvftqlnqsfeiikklecpdp~i~ah~mrrfakt 821 (1283)
T KOG1011|consen 743 EPFVMQWLDENEEVSMDFLRGALERDKKDGFQQ-TSEHALFSCSVVDVFTQLNQSFEIIKKLECPDPEIAAHYMRRFAKT 821 (1283)
T ss_pred HHHHHHHhccchHHHHHHHHhHhhcccccCccc-cchhhhhcchHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 67777777665556667788888777542 233 345567788999999999999999876433 23333344455566
Q ss_pred HHHHHHHHHHHhcCCCCC--CchhHHHHHhhhhhhhHHHHHH
Q 007292 474 MIDFQAAERERLAEPAPE--IGLEPLCAMINNNLRCYDLAME 513 (609)
Q Consensus 474 l~~f~~~y~~~l~~~~~~--~~~e~liA~~N~~~~~~e~~~~ 513 (609)
+.+.+-.|.+.+.+..+. .....-|.+.||-....-..+.
T Consensus 822 i~kvllqyadivskdfp~y~~keklpcilmnnvqqlrvqlek 863 (1283)
T KOG1011|consen 822 INKVLLQYADIVSKDFPKYCHKEKLPCILMNNVQQLRVQLEK 863 (1283)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhccCCeeeeccHHHHHHHHHH
Confidence 666677777766543221 1122346667776655444333
No 23
>KOG3958 consensus Putative dynamitin [Cytoskeleton]
Probab=87.93 E-value=16 Score=36.81 Aligned_cols=110 Identities=13% Similarity=0.120 Sum_probs=67.6
Q ss_pred HHHHHHHhhcCCCCchhhHHHHHHHHHH----HHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007292 13 AAVREVAKLLTLPDQLQFIGDMKADYIA----RQQANDSQLSTMVA--EQIEQAQTGLESLALSEQMISQLRENFISIER 86 (609)
Q Consensus 13 ~a~~~v~~ll~~p~~L~kl~~l~~~~~~----~k~s~~~qLk~~v~--~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~ 86 (609)
+|.+.++.-++..-=|+.|..+..++.- ....++++|.+.+- ..+...+.|...=.+....|-+|-+-+.+-.-
T Consensus 212 d~~~~lsa~~~~a~vletVe~L~~k~s~l~~~~ld~vEqRL~s~lgK~~~IaEk~~~s~~Da~~d~KV~elye~~qrw~p 291 (371)
T KOG3958|consen 212 DAQNPLSAGLQGACVLETVELLQAKVSALDLAVLDQVEQRLQSVLGKVNEIAEKHKASVEDADTDSKVHELYETIQRWSP 291 (371)
T ss_pred cccCchhhccCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHhhhh
Confidence 3444445555555556666666666543 23333444443321 11222222332333456677778788888888
Q ss_pred HHHHhHHHHHchHHHHHHHHHHHHHHHHHHHHhhhh
Q 007292 87 YCQECQTLIENHDQIKLLSNARNNLSTTLKDVEGMM 122 (609)
Q Consensus 87 ~~~~~~~~v~~~~~Ik~l~~~~~nl~~t~~~l~~l~ 122 (609)
.|+..+.+|+++..|++++---.||+.-++.++..+
T Consensus 292 i~stLP~~V~rl~al~~LHeqa~~Fa~~lthl~t~q 327 (371)
T KOG3958|consen 292 IASTLPELVQRLVALKQLHEQAMQFAQLLTHLDTTQ 327 (371)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999999999888888888777777543
No 24
>smart00762 Cog4 COG4 transport protein. This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport.
Probab=81.71 E-value=28 Score=36.48 Aligned_cols=78 Identities=14% Similarity=0.192 Sum_probs=58.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 007292 395 AMDPLMNSYVERMQATTKKWYLNILDADKVQPPKRTEDGKLYTPAAVDLFRILGEQVQIVRENSTDIMLYRIALAIIQVM 474 (609)
Q Consensus 395 ~~~~L~~~Yl~~~~~~~~ew~~~~l~~er~~~Pe~d~dG~~~t~~~vdlfqmi~qql~~a~~~~~~~~~~~v~~~~~~~l 474 (609)
.+.+|+..|+....--+.+=+.++++.+. .|..+..+.+.|+..-|+|-+++..+.++-.+++-.....++..+...|
T Consensus 234 kvqell~~Y~~le~~y~~~Sv~KAi~lde--~~~~~~~~~~~SS~VDDvffil~k~l~RalsT~~~~~v~a~in~~~~~L 311 (324)
T smart00762 234 KIQELLGTYVPLETYYFRRSVEKAIKLDE--LPSDEDKDPLTSSMVDDVFYLLRKVLRRALSTGNIASLTAFINELASVL 311 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc--CCcccCCCCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 35678899988888888888888886653 2323567889999999999999999999988777655545555554444
No 25
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=79.47 E-value=1.3e+02 Score=35.06 Aligned_cols=162 Identities=19% Similarity=0.159 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHch-HHHHHHHHHH
Q 007292 30 FIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLIENH-DQIKLLSNAR 108 (609)
Q Consensus 30 kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~-~~Ik~l~~~~ 108 (609)
.++.+..++.++.+.+|+.--..+-+.-..+..-+..+..+...+.++...+..-+.........|+.+ ..=+.+....
T Consensus 2 dad~~~~~L~~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~ 81 (701)
T PF09763_consen 2 DADAFEERLSKELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQS 81 (701)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHH
Confidence 467889999999999998776666555555666666777788888777777777666666555544444 2223345556
Q ss_pred HHHHHHHHHHhhh---hchhHHHHHHHhhhcCC----hh-HHHHHHHHHHHHhHHHHHHHHHh-------hchHHHHHHH
Q 007292 109 NNLSTTLKDVEGM---MSISVEAAEAKDSLGDD----KE-LINTYERLTALDGKRRFALAAAE-------SHKEEVGRLR 173 (609)
Q Consensus 109 ~nl~~t~~~l~~l---~~~~~~~~~~~~~l~~~----~~-LL~ah~~L~~Le~~rd~~l~~~~-------~~~~d~~~L~ 173 (609)
.|-..-+..|+.| ..+|+. ....|..+ ++ |-.+...+..|-. +|..+. ..-..+..+.
T Consensus 82 ~N~k~L~~eL~~Ll~~l~i~~~---~l~~L~~~~l~~~~~l~~~e~a~~~L~~----Al~~i~~~~~~~~~~~~~M~Av~ 154 (701)
T PF09763_consen 82 ANQKLLLNELENLLDTLSIPEE---HLEALRNASLSSPDGLEKIEEAAEALYK----ALKAIRPDLEKLDPGLGQMRAVK 154 (701)
T ss_pred HHHHHHHHHHHHHHHhcCCCHH---HHHHHhcCCCCCcccHHHHHHHHHHHHH----HHHhcccccccCCCcHHHHHHHH
Confidence 6666666666655 344443 22233222 22 4444333333322 222211 0111234455
Q ss_pred HHhccHHHHHHHHHHHHHHHHHHHH
Q 007292 174 EYFEDVDQIWETFEKTLWGYISNFY 198 (609)
Q Consensus 174 ~~F~~v~~l~~~f~~~l~~i~~~~l 198 (609)
+.-+....+...|-+++...+.+.+
T Consensus 155 er~~~~~~~~~~F~~r~~~~l~~~F 179 (701)
T PF09763_consen 155 ERREEYEKVSDKFCKRLSRFLNNMF 179 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666655555555444
No 26
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=75.49 E-value=5 Score=36.07 Aligned_cols=105 Identities=13% Similarity=0.191 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHch-HHHHHHHHH
Q 007292 29 QFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLIENH-DQIKLLSNA 107 (609)
Q Consensus 29 ~kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~-~~Ik~l~~~ 107 (609)
..|+.++..+..-...++.+|-..|..-...--.--..|......|..++..+..+.+......+.+.+. ..|...-..
T Consensus 26 ~~Le~L~~dL~~~~~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~ 105 (133)
T PF06148_consen 26 VSLEDLRKDLRSYSKELKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQFREEVESVRDELDNTQEEIEDKLEE 105 (133)
T ss_dssp ------------------------------------------------HHHHHHHHHHHHHHHHHS-STTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577788888888888888887777544433222222344455556666666666665555555555544 556666666
Q ss_pred HHHHHHHHHHHhhhhchhHHHHHHHh
Q 007292 108 RNNLSTTLKDVEGMMSISVEAAEAKD 133 (609)
Q Consensus 108 ~~nl~~t~~~l~~l~~~~~~~~~~~~ 133 (609)
++++......++.+..+.+.+.+++.
T Consensus 106 ~~~l~~~k~~l~~~l~~~~~~~kle~ 131 (133)
T PF06148_consen 106 RKELREEKALLKLLLDISESLEKLED 131 (133)
T ss_dssp HHHHHHHHHT-SSSSHHH--------
T ss_pred HHHHHHHHHHHHHHHHhhhhcccccc
Confidence 67776666666666665555555544
No 27
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=74.37 E-value=32 Score=30.66 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHhhHHHHHHH
Q 007292 30 FIGDMKADYIARQQANDSQLST 51 (609)
Q Consensus 30 kl~~l~~~~~~~k~s~~~qLk~ 51 (609)
.|..-|+.+.++...++.+|-.
T Consensus 58 ~l~~tKkhLsqRId~vd~klDe 79 (126)
T PF07889_consen 58 SLSSTKKHLSQRIDRVDDKLDE 79 (126)
T ss_pred HHHHHHHHHHHHHHHHHhhHHH
Confidence 5566666666666666655543
No 28
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=73.21 E-value=93 Score=30.13 Aligned_cols=48 Identities=13% Similarity=0.071 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHchHHHHHHHHHHHHHHHHHHHHhh
Q 007292 67 LALSEQMISQLRENFISIERYCQECQTLIENHDQIKLLSNARNNLSTTLKDVEG 120 (609)
Q Consensus 67 L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~t~~~l~~ 120 (609)
|.+.-.+|.++...+.++-+.|..+-.. -+..+.+.++|..++..+.+
T Consensus 4 i~~~E~~~~~le~~l~kl~K~~k~~~~a------gk~~~~a~~~F~~~L~~f~~ 51 (200)
T cd07639 4 IEEVEAEVSELETRLEKLVKLGSGMLEG------GRHYCAASRAFVDGLCDLAH 51 (200)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhc
Confidence 4445566667777776666666654333 34457777888777777765
No 29
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=73.05 E-value=51 Score=34.48 Aligned_cols=16 Identities=25% Similarity=0.557 Sum_probs=7.7
Q ss_pred HHHHHHHHHhccHHHH
Q 007292 167 EEVGRLREYFEDVDQI 182 (609)
Q Consensus 167 ~d~~~L~~~F~~v~~l 182 (609)
.++..|..-|..+..+
T Consensus 276 ~Ev~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 276 SEVKRLKAKVDALEKL 291 (325)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555544443
No 30
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=72.67 E-value=72 Score=32.18 Aligned_cols=51 Identities=16% Similarity=0.190 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHch-HHHHHHHHHHHHHHHHHH
Q 007292 66 SLALSEQMISQLRENFISIERYCQECQTLIENH-DQIKLLSNARNNLSTTLK 116 (609)
Q Consensus 66 ~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~-~~Ik~l~~~~~nl~~t~~ 116 (609)
+|++|++.|++||+-+..++....+-..-|++| -+|+--+..-.+|-.+|+
T Consensus 118 ALKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsLLqsME 169 (305)
T PF15290_consen 118 ALKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESLLQSME 169 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHHHHHHH
Confidence 578888888888888888887777777777777 777544444444433333
No 31
>PF08318 COG4: COG4 transport protein; InterPro: IPR013167 This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport [].
Probab=67.81 E-value=70 Score=33.57 Aligned_cols=78 Identities=9% Similarity=0.123 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCCCCCCCCccccCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 007292 397 DPLMNSYVERMQATTKKWYLNILDADKV--QPPKRTEDGKLYTPAAVDLFRILGEQVQIVRENSTDIMLYRIALAIIQVM 474 (609)
Q Consensus 397 ~~L~~~Yl~~~~~~~~ew~~~~l~~er~--~~Pe~d~dG~~~t~~~vdlfqmi~qql~~a~~~~~~~~~~~v~~~~~~~l 474 (609)
+.|+..|+....--+.+=+.+++..|.- -.+..++++.+.|+..-|+|-+++..+.+|-.+++-.....++..+...+
T Consensus 238 qell~~Y~~Le~~y~~~Sv~KAi~lde~p~~~~~~~~~~~~~SS~vDDvffil~k~l~RalsTg~~~~v~a~in~~~~iL 317 (331)
T PF08318_consen 238 QELLGYYIPLEEFYLRRSVEKAIQLDELPSLNSLLDSSSPPTSSVVDDVFFILRKVLRRALSTGSIDTVCAVINHLVRIL 317 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCcchhhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 7889999998888888888888887742 11222467899999999999999999999987777655544554444444
No 32
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=67.30 E-value=77 Score=29.59 Aligned_cols=87 Identities=8% Similarity=0.103 Sum_probs=51.4
Q ss_pred CCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHch--HHH
Q 007292 24 LPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLIENH--DQI 101 (609)
Q Consensus 24 ~p~~L~kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~--~~I 101 (609)
+|+.+..++.-...+..+..++...++.. .+.+......+ ...+....|.+++.++..+........+..... +++
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l-~~eL~~L~~~~-t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~ 147 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSL-EAELASLSSEP-TNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEK 147 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 56677778877888888888888877766 56665555333 234456666666666666665555544322222 344
Q ss_pred HHHHHHHHHHH
Q 007292 102 KLLSNARNNLS 112 (609)
Q Consensus 102 k~l~~~~~nl~ 112 (609)
+.+...+..+.
T Consensus 148 ~~~~~~~~~~~ 158 (169)
T PF07106_consen 148 EKLEKEYKKWR 158 (169)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 33
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=66.76 E-value=1.4e+02 Score=29.69 Aligned_cols=27 Identities=11% Similarity=0.101 Sum_probs=14.5
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHH
Q 007292 172 LREYFEDVDQIWETFEKTLWGYISNFY 198 (609)
Q Consensus 172 L~~~F~~v~~l~~~f~~~l~~i~~~~l 198 (609)
...+++.-+.|...+...+...+.+..
T Consensus 158 ~~~~~~~~~~L~~~l~~ell~~yeri~ 184 (239)
T COG1579 158 GQELSSKREELKEKLDPELLSEYERIR 184 (239)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 444555555565555555555544443
No 34
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=64.52 E-value=1e+02 Score=29.11 Aligned_cols=118 Identities=20% Similarity=0.226 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHchHHHHHH
Q 007292 29 QFIGDMKADYIARQQANDSQLSTMVAEQI-EQAQTGLESLALSEQMISQLREN---FISIERYCQECQTLIENHDQIKLL 104 (609)
Q Consensus 29 ~kl~~l~~~~~~~k~s~~~qLk~~v~~ql-~~~~~gl~~L~~a~~~v~~l~~~---~~~i~~~~~~~~~~v~~~~~Ik~l 104 (609)
+-++.++.+-..+...++.+|+..-.+.. +.++.|+..+.+-.-.++++.+- ...+...|......++-+=.+=++
T Consensus 3 ~w~~~~~~~~~~~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv 82 (177)
T PF10602_consen 3 EWIEETKAKNAEELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRV 82 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Confidence 34788899999999999999998755554 56677777777766666655554 555666677777666666555567
Q ss_pred HHHHHHHHHHHHHHhhhhchhHHHHHHHhhhcCChhHHHHHHHHHHH
Q 007292 105 SNARNNLSTTLKDVEGMMSISVEAAEAKDSLGDDKELINTYERLTAL 151 (609)
Q Consensus 105 ~~~~~nl~~t~~~l~~l~~~~~~~~~~~~~l~~~~~LL~ah~~L~~L 151 (609)
....+|...+.+.+.....+++.-. + .+..|=|.++..|..|
T Consensus 83 ~i~~~d~~~v~~~i~ka~~~~~~~~---d--~~~~nrlk~~~gL~~l 124 (177)
T PF10602_consen 83 AIFFGDWSHVEKYIEKAESLIEKGG---D--WERRNRLKVYEGLANL 124 (177)
T ss_pred HHHhCCHHHHHHHHHHHHHHHhccc---h--HHHHHHHHHHHHHHHH
Confidence 7777787776666665544333210 0 0112346666666655
No 35
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.13 E-value=1.8e+02 Score=30.00 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=28.8
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHH---HHHHhhcCCchhhHH
Q 007292 169 VGRLREYFEDVDQIWETFEKTLWGYISN---FYKLSKESPQTLVRA 211 (609)
Q Consensus 169 ~~~L~~~F~~v~~l~~~f~~~l~~i~~~---~l~~~~~~~~~lv~~ 211 (609)
+..|...|-++..+++.-+..|-.|-.+ +.+.|..+.+-+.+|
T Consensus 215 i~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kA 260 (297)
T KOG0810|consen 215 IRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKA 260 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4668899999999988888887776444 444444444444444
No 36
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=62.30 E-value=83 Score=26.14 Aligned_cols=53 Identities=13% Similarity=0.288 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHchHHH
Q 007292 49 LSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLIENHDQI 101 (609)
Q Consensus 49 Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~~~I 101 (609)
.+..++++++-....++.|....+.+..+.+++..+......+..++..+..-
T Consensus 13 t~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~ 65 (92)
T PF03908_consen 13 TRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERR 65 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777888888999999999999999999999999999998888877544
No 37
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=59.73 E-value=1.3e+02 Score=26.96 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHhhhh
Q 007292 106 NARNNLSTTLKDVEGMM 122 (609)
Q Consensus 106 ~~~~nl~~t~~~l~~l~ 122 (609)
..+.+|..++..++.|-
T Consensus 98 ~~~~lL~~~v~~ie~LN 114 (131)
T PF10158_consen 98 RCQSLLNQTVPSIETLN 114 (131)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445555555555443
No 38
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.37 E-value=3.1e+02 Score=31.06 Aligned_cols=76 Identities=8% Similarity=0.147 Sum_probs=44.9
Q ss_pred HHHHHHhhcCCC-CchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007292 14 AVREVAKLLTLP-DQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTG-LESLALSEQMISQLRENFISIERYCQ 89 (609)
Q Consensus 14 a~~~v~~ll~~p-~~L~kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~g-l~~L~~a~~~v~~l~~~~~~i~~~~~ 89 (609)
..+.++...-.+ |-++.+..+-..+..-....+.+|++.+.+++-..... +......+..+..+.+.+.++..-|+
T Consensus 18 ~~kiL~~~~~~dkd~~~aL~~ls~~~~eN~~~~RRnLr~~iE~~~l~iN~e~l~ef~~i~~~l~~v~e~v~km~~t~~ 95 (655)
T KOG3758|consen 18 LSKILNNRTYSDKDALAALRALSTFFEENSLRARRNLRSDIESRLLKINEEFLKEFKEIKRRLDRVSEDVEKMANTCD 95 (655)
T ss_pred HHHHHHhcccCcHHHHHHHHHHHHHHHhhhHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555 44556777777777777777888888887776555432 23344445555555555544444444
No 39
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=59.18 E-value=1.3e+02 Score=26.77 Aligned_cols=43 Identities=12% Similarity=0.210 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhHHHHHchHHHHHHHHHHHHHHHHHHHHhhhhc
Q 007292 79 ENFISIERYCQECQTLIENHDQIKLLSNARNNLSTTLKDVEGMMS 123 (609)
Q Consensus 79 ~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~t~~~l~~l~~ 123 (609)
.++..++....++.+..+.++ +++..++.++...-..++.++.
T Consensus 68 qRId~vd~klDe~~ei~~~i~--~eV~~v~~dv~~i~~dv~~v~~ 110 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIK--DEVTEVREDVSQIGDDVDSVQQ 110 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHH
Confidence 444444444444443333331 1224444444444444444433
No 40
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=58.76 E-value=2.9e+02 Score=30.66 Aligned_cols=126 Identities=19% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHch-HHHHHHHHHHHHHHHH
Q 007292 36 ADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLIENH-DQIKLLSNARNNLSTT 114 (609)
Q Consensus 36 ~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~-~~Ik~l~~~~~nl~~t 114 (609)
.+-......++++|... .+++++...|+..|-..- .+...+.......| ...+.+..-.-+++.+
T Consensus 100 ~kA~~~i~~ie~~l~~i-E~~i~~il~~l~~Lv~sE-------------ekN~~~i~~~~ely~elr~~vl~n~~~~Ge~ 165 (570)
T COG4477 100 NKAKHEIDDIEQQLTLI-EEDIEQILEDLNELVESE-------------EKNSEEIDHVLELYEELRRDVLANRHQYGEA 165 (570)
T ss_pred HHhhhhHhhHHHHHHHH-HHHHHHHHHHHHHHHHHH-------------HhhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q ss_pred HHHHh-hhhchhHHHHHHHhhhcCChhHHHHHHHHHHHHhHHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHH
Q 007292 115 LKDVE-GMMSISVEAAEAKDSLGDDKELINTYERLTALDGKRRFALAAAESHKEEVGRLREYFEDVDQIWETFEKTL 190 (609)
Q Consensus 115 ~~~l~-~l~~~~~~~~~~~~~l~~~~~LL~ah~~L~~Le~~rd~~l~~~~~~~~d~~~L~~~F~~v~~l~~~f~~~l 190 (609)
+.-++ .|-.+.+...+-...-..|. -++|+..|-..+. ....|..+-+.|+.+...+++.+
T Consensus 166 ~~~lEk~Le~i~~~l~qf~~lt~~Gd-~ieA~evl~~~ee--------------~~~~L~~~~e~IP~L~~e~~~~l 227 (570)
T COG4477 166 APELEKKLENIEEELSQFVELTSSGD-YIEAREVLEEAEE--------------HMIALRSIMERIPSLLAELQTEL 227 (570)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCCC-hhHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhhc
No 41
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=58.52 E-value=1.8e+02 Score=30.28 Aligned_cols=15 Identities=20% Similarity=0.492 Sum_probs=7.2
Q ss_pred HHHHHHHHhccHHHH
Q 007292 168 EVGRLREYFEDVDQI 182 (609)
Q Consensus 168 d~~~L~~~F~~v~~l 182 (609)
++..|..-|..+..+
T Consensus 272 Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 272 EIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555444443
No 42
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=58.48 E-value=1.8e+02 Score=28.24 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 007292 99 DQIKLLSNARNNLSTTLKDVEG 120 (609)
Q Consensus 99 ~~Ik~l~~~~~nl~~t~~~l~~ 120 (609)
...+.++.+.++|..++..+.+
T Consensus 30 ~A~k~~~~a~~~Fa~sL~~f~~ 51 (207)
T cd07636 30 AALKNLSSAKRKFADSLNEFKF 51 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4456678888999888877774
No 43
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=58.10 E-value=1.8e+02 Score=27.93 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=17.9
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHH
Q 007292 170 GRLREYFEDVDQIWETFEKTLWGYISN 196 (609)
Q Consensus 170 ~~L~~~F~~v~~l~~~f~~~l~~i~~~ 196 (609)
..+.+.-+-++.+.+.|++.+..++.+
T Consensus 160 ~~l~e~~~~L~~l~~~f~~~~~~l~~~ 186 (199)
T PF10112_consen 160 QSLEEIEETLDTLNQAFEKDLDKLLED 186 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555556777777787777776654
No 44
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=56.37 E-value=1.3e+02 Score=26.78 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=24.2
Q ss_pred chHhhHHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHH
Q 007292 3 SEDLGVEAKEAAVREVAKLLTLPDQLQFIGDMKADYIARQ 42 (609)
Q Consensus 3 ~~~~~~~a~~~a~~~v~~ll~~p~~L~kl~~l~~~~~~~k 42 (609)
+......|+++=-++=.++..|.++...|..+|..+..-+
T Consensus 33 l~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~ 72 (132)
T PF07926_consen 33 LESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQ 72 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444455555555666667777777666766666655533
No 45
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=54.38 E-value=1.9e+02 Score=27.25 Aligned_cols=79 Identities=15% Similarity=0.252 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHch-HHHHHHHHHHHHHHHHH-HHHhhhhchhHHHHHH
Q 007292 54 AEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLIENH-DQIKLLSNARNNLSTTL-KDVEGMMSISVEAAEA 131 (609)
Q Consensus 54 ~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~-~~Ik~l~~~~~nl~~t~-~~l~~l~~~~~~~~~~ 131 (609)
-..|..++.++....+.+..|+.+..++.++.+... + .| +.+.....+|..+.-+. ..++.....-+++.++
T Consensus 36 ~~~L~~~~~~L~~~~s~re~i~~l~k~~~eL~~YLD-P-----~~~e~~~l~~~~K~~~ILa~e~~i~~~~~~Leki~~L 109 (174)
T PF07426_consen 36 IDSLLSVQSALNSAASKRERIKELFKRIEELNKYLD-P-----NFIEEIQLPDSAKLQIILAEEDEIKSTAELLEKIKSL 109 (174)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcC-c-----hhhhhcccchHHHHHHHHHccHHHHHHHHHHHHHHHh
Confidence 344555555665555566666655555544443222 1 12 22222234455543332 3344444444445555
Q ss_pred HhhhcCC
Q 007292 132 KDSLGDD 138 (609)
Q Consensus 132 ~~~l~~~ 138 (609)
+-.+...
T Consensus 110 ~pvL~se 116 (174)
T PF07426_consen 110 EPVLDSE 116 (174)
T ss_pred hhhcCcH
Confidence 5555443
No 46
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=52.38 E-value=3.2e+02 Score=29.09 Aligned_cols=20 Identities=30% Similarity=0.405 Sum_probs=13.3
Q ss_pred hhcCChhHHHHHHHHHHHHh
Q 007292 134 SLGDDKELINTYERLTALDG 153 (609)
Q Consensus 134 ~l~~~~~LL~ah~~L~~Le~ 153 (609)
-+.|+..|..+...|..|+.
T Consensus 323 ~mtD~sPlv~IKqAl~kLk~ 342 (359)
T PF10498_consen 323 SMTDGSPLVKIKQALTKLKQ 342 (359)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 34455448888888887754
No 47
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=52.30 E-value=6.5e+02 Score=32.68 Aligned_cols=123 Identities=16% Similarity=0.262 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhHHHHHchHHHHHHHHHHHHHHHHHHHHh
Q 007292 54 AEQIEQAQTGLESLALSE--------------QMISQLRENFISIERYCQECQTLIENHDQIKLLSNARNNLSTTLKDVE 119 (609)
Q Consensus 54 ~~ql~~~~~gl~~L~~a~--------------~~v~~l~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~t~~~l~ 119 (609)
|+|++.--.|+..|..-+ ..+.++..-|.+-... ..++.+-++|+++..+...-+-|..-.+++-
T Consensus 1667 Q~qldkly~~Lk~LA~eRr~~Lee~l~L~el~RE~dDLeqWIae~e~v-AgS~elGqD~EHv~~Lq~KF~eFa~~te~iG 1745 (2473)
T KOG0517|consen 1667 QSQLDKLYAGLKDLAEERRRRLEETLRLYELSREVDDLEQWIAEKEVV-AGSEELGQDFEHVTLLQEKFREFARDTEAIG 1745 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcChhhcCChHHHHHHHHHHHHHHHHHhhhh
Confidence 566666666665554433 3344444444443322 3678888999999999887777775444332
Q ss_pred --hhhchhHHHHHHHhhhcCC-----------hhHHHHHHHHHHHHhHHHHHHHHHhhchHHHHHHHHHhccHHHHHHHH
Q 007292 120 --GMMSISVEAAEAKDSLGDD-----------KELINTYERLTALDGKRRFALAAAESHKEEVGRLREYFEDVDQIWETF 186 (609)
Q Consensus 120 --~l~~~~~~~~~~~~~l~~~-----------~~LL~ah~~L~~Le~~rd~~l~~~~~~~~d~~~L~~~F~~v~~l~~~f 186 (609)
++-..+.-++ .+|..+ ..|-.|+..|.+|-+.|...|+.+ .+|.++|.++..+....
T Consensus 1746 ~eRv~~~n~la~---~LI~~ghs~a~tvaewkd~LneaW~~LlELi~tR~q~Laas-------~elhrf~~D~~E~l~ri 1815 (2473)
T KOG0517|consen 1746 SERVAACNLLAD---ELIERGHSAAATVAEWKDGLNEAWADLLELIDTRGQKLAAS-------RELHRFHRDAREVLGRI 1815 (2473)
T ss_pred HHHHHHHHHHHH---HHHhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhHHHHHHHH
Confidence 3333222222 222222 368899999999999999888866 47788888877765544
Q ss_pred H
Q 007292 187 E 187 (609)
Q Consensus 187 ~ 187 (609)
.
T Consensus 1816 q 1816 (2473)
T KOG0517|consen 1816 Q 1816 (2473)
T ss_pred H
Confidence 3
No 48
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=52.12 E-value=4.7e+02 Score=30.97 Aligned_cols=140 Identities=11% Similarity=0.117 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCChhhHHHHhchhHHhHHhH-hcCCCCccccccCCCcC--chhHHHHHHHHHHHH
Q 007292 333 FQLMVNLYTERFIQMLRLLSDRANELTNIEILKVTGWVVEYQDNL-IGLGVDESLAQVCSESG--AMDPLMNSYVERMQA 409 (609)
Q Consensus 333 ~~~~~~~yh~~l~~~L~~l~~~~~~l~~~~ll~lL~wv~~Y~~~l-~~l~~~~~~l~~ll~~~--~~~~L~~~Yl~~~~~ 409 (609)
...+...|+.+-...|...|.....-+. -..+..|...|+..+ .-++-+..+....+++. .+-.|+-.=+..+.-
T Consensus 216 ~~~l~~~Y~~~r~~~l~~~W~~~~~~~~--~~~~~~~L~~fyd~ll~~l~~E~~w~~~vF~~~~~~~~~ll~~~L~~L~P 293 (766)
T PF10191_consen 216 EPQLEQYYCKCRKAPLQRLWQEYCQSDQ--SQSFAEWLPSFYDELLSLLHQELKWCSQVFPDESPVLPKLLAETLSALQP 293 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCc
Confidence 3455678888888899988842111111 177889998877654 33332222322222221 223344444444555
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCccccCchhHHHHHHH---HHHHHHHhh----hhhHHHHHHHHHHHHHHHHHHHHHH
Q 007292 410 TTKKWYLNILDADKVQPPKRTEDGKLYTPAAVDLFRILG---EQVQIVREN----STDIMLYRIALAIIQVMIDFQAAER 482 (609)
Q Consensus 410 ~~~ew~~~~l~~er~~~Pe~d~dG~~~t~~~vdlfqmi~---qql~~a~~~----~~~~~~~~v~~~~~~~l~~f~~~y~ 482 (609)
.+..++..+++. ..|.. .+..-++++++-. .+++.+-.. .+......++..+..-+..|+.+|.
T Consensus 294 S~~~~l~~al~~---~~~~~------~L~~L~~l~~~t~~Fa~~l~~~l~~~~~~~~l~~~~~l~~al~~PF~~~q~~Yg 364 (766)
T PF10191_consen 294 SFPSRLSSALKR---AGPET------KLETLIELYQATEHFARNLEHLLSSLPGESNLSKVEELLQALFEPFKPYQQRYG 364 (766)
T ss_pred cHHHHHHHHHhh---cCchh------hHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666665531 12221 1333444444422 222222111 2222333667777777888888885
Q ss_pred H
Q 007292 483 E 483 (609)
Q Consensus 483 ~ 483 (609)
.
T Consensus 365 ~ 365 (766)
T PF10191_consen 365 E 365 (766)
T ss_pred H
Confidence 4
No 49
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=51.68 E-value=5.4e+02 Score=31.58 Aligned_cols=13 Identities=0% Similarity=0.179 Sum_probs=5.7
Q ss_pred CchhhHHHHHHHH
Q 007292 26 DQLQFIGDMKADY 38 (609)
Q Consensus 26 ~~L~kl~~l~~~~ 38 (609)
.|+++...|..+.
T Consensus 1539 ~di~ra~~L~s~A 1551 (1758)
T KOG0994|consen 1539 GDIARAENLQSEA 1551 (1758)
T ss_pred hhHHHHHHHHHHH
Confidence 3444444444433
No 50
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.40 E-value=2.4e+02 Score=27.05 Aligned_cols=86 Identities=15% Similarity=0.199 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHhHHHHHchHHHHHHH
Q 007292 29 QFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLREN-F--ISIERYCQECQTLIENHDQIKLLS 105 (609)
Q Consensus 29 ~kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~-~--~~i~~~~~~~~~~v~~~~~Ik~l~ 105 (609)
+.|+.--..+..+.+.+|++|... +.|+..++.|-.+=.--++.+.-|+.+ + +.-+.+.+.+-+ ..+++
T Consensus 22 ~~v~~r~dSve~KIskLDaeL~k~-~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfN-------MeQa~ 93 (218)
T KOG1655|consen 22 DSVNKRSDSVEKKISKLDAELCKY-KDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFN-------MEQAN 93 (218)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHH-HHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------HHHHH
Confidence 456666777888888899998877 888888887775422223333333322 1 112223333322 23455
Q ss_pred HHHHHHHHHHHHHhhhh
Q 007292 106 NARNNLSTTLKDVEGMM 122 (609)
Q Consensus 106 ~~~~nl~~t~~~l~~l~ 122 (609)
.+-.+|.-|+.++..+.
T Consensus 94 ~t~e~LKdtq~Tv~AmK 110 (218)
T KOG1655|consen 94 FTAESLKDTQATVAAMK 110 (218)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666665555543
No 51
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=50.22 E-value=1.5e+02 Score=25.43 Aligned_cols=56 Identities=20% Similarity=0.290 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007292 34 MKADYIARQQANDS-----QLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQ 89 (609)
Q Consensus 34 l~~~~~~~k~s~~~-----qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~ 89 (609)
+-.++..|++.+++ .+...+..|+++...-+..|.+.-..|..+-.+-..|-+...
T Consensus 2 l~~ri~eKk~ELe~L~~l~~lS~~L~~qle~L~~kl~~m~dg~e~Va~Vl~NW~nV~r~Is 62 (103)
T PF08654_consen 2 LQARIAEKKAELEALKQLRDLSADLASQLEALSEKLETMADGAEAVASVLANWQNVFRAIS 62 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhHHHHHHHHH
Confidence 34566677777765 455566778888887888888888887777777665554443
No 52
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=49.81 E-value=4.6e+02 Score=30.51 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHch
Q 007292 58 EQAQTGLESLALSEQMISQLRENFISIERYCQECQTLIENH 98 (609)
Q Consensus 58 ~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~ 98 (609)
.++..-+.=+..++..+.+|++.+.+|+........+|+.|
T Consensus 36 ~~~~qi~~Wi~k~k~~l~~L~~~l~~ID~ai~~~l~lIe~~ 76 (683)
T PF08580_consen 36 GAAEQILDWIQKAKDVLYGLREGLEEIDSAISRFLDLIEVY 76 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 33444455567778888888888888888888777777776
No 53
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=49.03 E-value=2.6e+02 Score=27.14 Aligned_cols=48 Identities=21% Similarity=0.142 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHchHHHHHHHHHHHHHHHHHHHHhh
Q 007292 67 LALSEQMISQLRENFISIERYCQECQTLIENHDQIKLLSNARNNLSTTLKDVEG 120 (609)
Q Consensus 67 L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~t~~~l~~ 120 (609)
|+.--.+|.++-..+.++-+.|..+- ..-|.++.|.+-|..++..+++
T Consensus 4 l~~hE~ele~~~~~IkkliK~~~~li------~a~K~~s~A~r~Fa~~L~df~f 51 (207)
T cd07633 4 LKCYEQELERTNKFIKDVIKDGNALI------SAIKEYSSAVQKFSQTLQSFQF 51 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 44445566666666655555555332 2234557777888777777765
No 54
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=48.84 E-value=3e+02 Score=27.88 Aligned_cols=30 Identities=20% Similarity=0.385 Sum_probs=21.5
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 007292 170 GRLREYFEDVDQIWETFEKTLWGYISNFYKLSKES 204 (609)
Q Consensus 170 ~~L~~~F~~v~~l~~~f~~~l~~i~~~~l~~~~~~ 204 (609)
+-+++||-+++.-..+++..+.+ +++|..+
T Consensus 145 kGiQKYFvDINiQN~KLEsLLqs-----MElAq~g 174 (305)
T PF15290_consen 145 KGIQKYFVDINIQNKKLESLLQS-----MELAQSG 174 (305)
T ss_pred hhHHHHHhhhhhhHhHHHHHHHH-----HHHHHhc
Confidence 44889999998887777666554 6666554
No 55
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.53 E-value=3.1e+02 Score=27.87 Aligned_cols=41 Identities=15% Similarity=0.176 Sum_probs=28.7
Q ss_pred HHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 007292 155 RRFALAAAESHKEEVGRLREYFEDVDQIWETFEKTLWGYISNFY 198 (609)
Q Consensus 155 rd~~l~~~~~~~~d~~~L~~~F~~v~~l~~~f~~~l~~i~~~~l 198 (609)
|...+.++ ..|+..+...|+++..++..-+..|-+|-.++-
T Consensus 178 R~q~I~~l---E~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve 218 (269)
T KOG0811|consen 178 REQAIEQL---EADIIDVNEIFKDLGSLVHEQGELVDSIEANVE 218 (269)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHH
Confidence 44444444 456777888999999998888877777655443
No 56
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=48.07 E-value=71 Score=25.64 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 007292 58 EQAQTGLESLALSEQMISQLRENF 81 (609)
Q Consensus 58 ~~~~~gl~~L~~a~~~v~~l~~~~ 81 (609)
++.+..+..|+....+|.++-+++
T Consensus 21 daLq~~V~~l~~~~~~v~~l~~kl 44 (75)
T PF05531_consen 21 DALQTQVDDLESNLPDVTELNKKL 44 (75)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHH
Confidence 333333333333334444444333
No 57
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=47.08 E-value=6e+02 Score=30.85 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHch
Q 007292 67 LALSEQMISQLRENFISIERYCQECQTLIENH 98 (609)
Q Consensus 67 L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~ 98 (609)
+..++.++..+-+.+...+..-..++..+.+|
T Consensus 541 ~~~s~~d~s~l~~kld~~~~~~d~n~~~~~~~ 572 (1041)
T KOG0243|consen 541 LEESQDDLSSLFEKLDRKDRLDDDNQEVIDDF 572 (1041)
T ss_pred HHHHHHHHHHHHHHhhhhhccccccHHHHHHH
Confidence 56666666666666666666666666666666
No 58
>KOG4182 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.51 E-value=4.3e+02 Score=28.95 Aligned_cols=107 Identities=13% Similarity=0.084 Sum_probs=54.1
Q ss_pred HHHHHHHhhcC--CCCc----hhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 007292 13 AAVREVAKLLT--LPDQ----LQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQ----TGLESLALSEQMISQLRENFI 82 (609)
Q Consensus 13 ~a~~~v~~ll~--~p~~----L~kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~----~gl~~L~~a~~~v~~l~~~~~ 82 (609)
+|..|||.-.+ ||++ =+..+.+.+.+..|..-.-..+...+..|-.++- ++-.....-+.++-.++++|.
T Consensus 12 da~~WiNancka~h~ed~rddsea~e~~i~dle~KLQia~eeigaalEEqSggal~rmPRaakd~~~Lq~Da~~Lq~kma 91 (828)
T KOG4182|consen 12 DAAEWINANCKAFHEEDGRDDSEAAEAFIRDLEAKLQIAIEEIGAALEEQSGGALARMPRAAKDSAALQADAHRLQEKMA 91 (828)
T ss_pred CHHHHHhhhhhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccchHhhCchhhhHHHHHHHHHHHHHHHHH
Confidence 45567776654 4443 2456666666666665555566666665554432 222233334555666666666
Q ss_pred HHHHHHHHhHHHHHch-HHHHHHHHHHHHHHHHHHHHh
Q 007292 83 SIERYCQECQTLIENH-DQIKLLSNARNNLSTTLKDVE 119 (609)
Q Consensus 83 ~i~~~~~~~~~~v~~~-~~Ik~l~~~~~nl~~t~~~l~ 119 (609)
.|.......++...+- ..+-+++..++-+..+.+.+.
T Consensus 92 ~il~el~~aegesadCiAaLaRldn~kQkleaA~esLQ 129 (828)
T KOG4182|consen 92 AILLELAAAEGESADCIAALARLDNKKQKLEAAKESLQ 129 (828)
T ss_pred HHHHHHHHHhCChHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6654444333322222 444444444555544444433
No 59
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=46.11 E-value=2.8e+02 Score=33.44 Aligned_cols=93 Identities=17% Similarity=0.223 Sum_probs=65.0
Q ss_pred CCchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHch-HHHH
Q 007292 25 PDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLES-LALSEQMISQLRENFISIERYCQECQTLIENH-DQIK 102 (609)
Q Consensus 25 p~~L~kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~-L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~-~~Ik 102 (609)
+..++.|-..|.++..+...+.. +..--++++.-..|++. +...+.++..++..+..-+.-.+..++.+.++ +.|.
T Consensus 651 ek~~~~L~~~k~rl~eel~ei~~--~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~ 728 (1141)
T KOG0018|consen 651 EKEVDQLKEKKERLLEELKEIQK--RRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEIS 728 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHH
Confidence 34456677778888888888777 33344555555566765 77788888888877776666667777777888 7887
Q ss_pred HHHHHHHHHHHHHHHHh
Q 007292 103 LLSNARNNLSTTLKDVE 119 (609)
Q Consensus 103 ~l~~~~~nl~~t~~~l~ 119 (609)
.+-.--+|...+|..|+
T Consensus 729 ~i~r~l~~~e~~~~~L~ 745 (1141)
T KOG0018|consen 729 EIKRKLQNREGEMKELE 745 (1141)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666667766666555
No 60
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=45.55 E-value=4.4 Score=27.08 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=20.2
Q ss_pred cccccccccccccccccchHHHH
Q 007292 578 FTSFLFLDCKYYKSNPYICLNFW 600 (609)
Q Consensus 578 i~dY~~~D~~~~~~~~~~~~~~~ 600 (609)
++.| +.|.++|+-.-.|||-+.
T Consensus 9 iery-fddiqkwirnit~cfal~ 30 (40)
T PF13124_consen 9 IERY-FDDIQKWIRNITFCFALL 30 (40)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHH
Confidence 6899 999999999888999887
No 61
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=45.12 E-value=5.1e+02 Score=29.37 Aligned_cols=14 Identities=14% Similarity=0.192 Sum_probs=10.6
Q ss_pred ccCCcchHHHHHHH
Q 007292 267 KVQGKGYKDKCYEQ 280 (609)
Q Consensus 267 ~~~~r~~k~~~~~~ 280 (609)
||.|..|.+.|+.+
T Consensus 436 PGlp~~y~~~~~~~ 449 (560)
T PF06160_consen 436 PGLPEDYLDYFFDV 449 (560)
T ss_pred CCCCHHHHHHHHHH
Confidence 78899999876443
No 62
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=43.81 E-value=3.4e+02 Score=27.03 Aligned_cols=86 Identities=15% Similarity=0.201 Sum_probs=45.1
Q ss_pred CchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHch-HHHHHH
Q 007292 26 DQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLIENH-DQIKLL 104 (609)
Q Consensus 26 ~~L~kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~-~~Ik~l 104 (609)
++++.+.....+..+.......++. .--+..+.-...+......+..++.......+....-+.-+.++ ..|..+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~sQ~~id----~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 21 ATLDQAQQVQQQWVQAAQQSQKRID----QWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455554444444333333322222 22233333333455555666666666666666666666666666 667777
Q ss_pred HHHHHHHHHHH
Q 007292 105 SNARNNLSTTL 115 (609)
Q Consensus 105 ~~~~~nl~~t~ 115 (609)
...++.+.-.|
T Consensus 97 ~~~~~~l~p~m 107 (251)
T PF11932_consen 97 EETRQELVPLM 107 (251)
T ss_pred HHHHHHHHHHH
Confidence 77777776543
No 63
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=43.70 E-value=5.8e+02 Score=29.65 Aligned_cols=161 Identities=13% Similarity=0.080 Sum_probs=76.3
Q ss_pred CccccCchhHHHHHHHHHHHH---------HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh--cCC----CCCCchhHH
Q 007292 433 GKLYTPAAVDLFRILGEQVQI---------VRENSTDIMLYRIALAIIQVMIDFQAAERERL--AEP----APEIGLEPL 497 (609)
Q Consensus 433 G~~~t~~~vdlfqmi~qql~~---------a~~~~~~~~~~~v~~~~~~~l~~f~~~y~~~l--~~~----~~~~~~e~l 497 (609)
.-=+|++.+|+-..+.+.-.. +..+.-+. ++++.+++...-|-+.-..+. .++ .+..-.+-+
T Consensus 649 ~~RhSSS~~d~~~~l~~i~efW~rl~wpD~~~ai~~~~---QL~dvVCea~~~Yt~li~sa~~dtq~~~a~~p~~~s~~l 725 (1103)
T KOG1328|consen 649 DMRHSSSHIDICHILEQITEFWERLDWPDAGLAIEYTR---QLVDVVCEAVTVYTQLIISAEGDTQELQAFIPSQLSHLL 725 (1103)
T ss_pred hhccccchhhHHHHHHHHHHHHHHcCCCChhHHHHHHH---HHHHHHHHHHHHHHHHHHHhhcccchhhhcChHHHHHHH
Confidence 456888889988777654322 22222222 233333333333333222111 111 112224679
Q ss_pred HHHhhhhhhhHHHHHH-HHHHhcc--cCCcccccccchhHHhhhH-HHHHHHHHHHHHHHHhcCccchHHh-hhhcCCCc
Q 007292 498 CAMINNNLRCYDLAME-LSTSTME--ALPPNYAEQVNFEDACKGF-LEVTKEAVRHTLNVIFEDPGVEQLL-VKLYQKGK 572 (609)
Q Consensus 498 iA~~N~~~~~~e~~~~-l~~~~~~--~v~~~~~~~i~~~~~~~~f-~~l~~~a~~~L~~~i~~d~~l~p~~-~~lft~~W 572 (609)
|+.+||+.+-...... ++....+ ...++..-+-.++.+.... .++-++|-+ ++..+-.- .-|.+ +.+|--.|
T Consensus 726 Cv~iNNvE~VRrsl~~~~k~~~~p~~~~~~~~~l~~~~~n~les~~~~~~~e~~r-i~~~Lt~~--m~~~~~K~vfHlaw 802 (1103)
T KOG1328|consen 726 CVAINNVEQVRRSLNITEKLHMDPRSRLNGNHMLKSEIENRLESCESNICSEIDR-IVGLLTER--MLPQMKKHVFHLAW 802 (1103)
T ss_pred HHHHccHHHHHHHHhHHhhhccCcccccCccccCchHHHHHHHHHHHHHHHHHHH-HHHHhhHH--hhHHHHHHHHheec
Confidence 9999999998887743 2222222 1222221111222222222 333333332 23322222 33433 34577789
Q ss_pred e--------eeeecccccccccccccccccchHHHH
Q 007292 573 S--------LLKSFTSFLFLDCKYYKSNPYICLNFW 600 (609)
Q Consensus 573 ~--------i~~Ti~dY~~~D~~~~~~~~~~~~~~~ 600 (609)
+ -+.-+-|| +.---.-++.++.+=||.
T Consensus 803 SPds~~~~~a~~PL~~y-LD~~La~ln~~Ll~~Nf~ 837 (1103)
T KOG1328|consen 803 SPDSQLVEDALKPLTDY-LDIELASLNKNLLHRNFL 837 (1103)
T ss_pred CccccchhhhHHHHHHH-HHHHHHHHHHHHHhhhHH
Confidence 4 44456788 666556666666666665
No 64
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=43.01 E-value=1.8e+02 Score=23.56 Aligned_cols=41 Identities=7% Similarity=0.147 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHch-HHHHHHHHHHH
Q 007292 69 LSEQMISQLRENFISIERYCQECQTLIENH-DQIKLLSNARN 109 (609)
Q Consensus 69 ~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~-~~Ik~l~~~~~ 109 (609)
.....+...+.+|..|..-|..+..+...+ +.+.+....|+
T Consensus 19 ~~~~~L~~a~~~~~~v~~~~~~t~~LLd~w~~IlSQte~~~~ 60 (78)
T PF08651_consen 19 GLIETLRSAKSNMNRVQETVESTNTLLDKWIRILSQTEHTQR 60 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555577888888888888888888 44444444443
No 65
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=42.93 E-value=3e+02 Score=26.03 Aligned_cols=23 Identities=0% Similarity=-0.008 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHH
Q 007292 30 FIGDMKADYIARQQANDSQLSTM 52 (609)
Q Consensus 30 kl~~l~~~~~~~k~s~~~qLk~~ 52 (609)
...+...++.++...++.++.+.
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~~~ 107 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQEL 107 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 66
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=41.17 E-value=2.8e+02 Score=25.23 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 007292 30 FIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGL 64 (609)
Q Consensus 30 kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl 64 (609)
..+.=...++++...++.+|-.. +.++..+...+
T Consensus 32 ~~E~EI~sL~~K~~~lE~eld~~-~~~l~~~k~~l 65 (143)
T PF12718_consen 32 QKEQEITSLQKKNQQLEEELDKL-EEQLKEAKEKL 65 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 33444444444444444444333 33333333333
No 67
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=40.31 E-value=2.9e+02 Score=25.18 Aligned_cols=30 Identities=27% Similarity=0.251 Sum_probs=19.8
Q ss_pred CCCchhhHHHHHHHHHHHHhhHHHHHHHHHH
Q 007292 24 LPDQLQFIGDMKADYIARQQANDSQLSTMVA 54 (609)
Q Consensus 24 ~p~~L~kl~~l~~~~~~~k~s~~~qLk~~v~ 54 (609)
+|++|++|..+...++.-+..+.. |+..|+
T Consensus 31 sp~~l~~i~~~~~~i~~~~~r~~e-Lk~lI~ 60 (142)
T TIGR03042 31 SPAQLAQIQRQAEGIEAAKDRLPE-LASLVA 60 (142)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhHH-HHHHHh
Confidence 577788877777777666655554 555553
No 68
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=39.76 E-value=4.3e+02 Score=27.05 Aligned_cols=64 Identities=19% Similarity=0.312 Sum_probs=37.3
Q ss_pred chh-hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 007292 27 QLQ-FIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLES----LALSEQMISQLRENFISIERYCQE 90 (609)
Q Consensus 27 ~L~-kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~----L~~a~~~v~~l~~~~~~i~~~~~~ 90 (609)
+|. .|..++.++..........+...-+.+++..+.+... +..++..+..++..+.....-...
T Consensus 166 dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~ 234 (312)
T PF00038_consen 166 DLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELES 234 (312)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhc
Confidence 466 4777887777666666666666666777666554433 555555555555555444433333
No 69
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=39.74 E-value=5e+02 Score=27.79 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHchHHHHHHHHHHHHHHHHHH
Q 007292 72 QMISQLRENFISIERYCQECQTLIENHDQIKLLSNARNNLSTTLK 116 (609)
Q Consensus 72 ~~v~~l~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~t~~ 116 (609)
..|.+|-+.+..++..+.-.+.++.+++.++.++.-=.++..++.
T Consensus 295 ~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~ 339 (388)
T PF04912_consen 295 SKIDELYEILPRWDPYAPSLPSLVERLKTLKSLHEEAAEFSQTLS 339 (388)
T ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555555555444444333333333333
No 70
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=39.04 E-value=1e+03 Score=31.12 Aligned_cols=97 Identities=16% Similarity=0.217 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHH--HH------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007292 10 AKEAAVREVAKLLTLPDQLQFIGDMKADYIARQQANDSQLSTMVA--EQ------IEQAQTGLESLALSEQMISQLRENF 81 (609)
Q Consensus 10 a~~~a~~~v~~ll~~p~~L~kl~~l~~~~~~~k~s~~~qLk~~v~--~q------l~~~~~gl~~L~~a~~~v~~l~~~~ 81 (609)
.|+.|+ .+++++ .+||+++-+|+.+|-+-=++=|+..-+ +| |-.|..++.....+..+|---.+.+
T Consensus 398 eRe~AL--r~ELiR----QEKLEqLA~RFdrKAamREtwL~enqrlvsqdnfg~~LaaVEAa~KKheAIetDI~AyeeRv 471 (2473)
T KOG0517|consen 398 ERELAL--RAELIR----QEKLEQLARRFDRKAAMRETWLKENQRLVSQDNFGYDLAAVEAALKKHEAIETDILAYEERV 471 (2473)
T ss_pred HHHHHH--HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 455555 466665 489999999999988777777776532 22 5677778888888888999889999
Q ss_pred HHHHHHHHHhHHHHHchHHHHHHHHHHHHHHHH
Q 007292 82 ISIERYCQECQTLIENHDQIKLLSNARNNLSTT 114 (609)
Q Consensus 82 ~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~t 114 (609)
..+...|.+... ++|.+++++...+.|+..-
T Consensus 472 qal~ava~eL~~--E~YHd~~rV~~r~~~V~~~ 502 (2473)
T KOG0517|consen 472 QALVAVADELEA--ENYHDIKRVAARKDNVLRL 502 (2473)
T ss_pred HHHHHHHHHHHH--hccchHHHHHHHHHHHHHH
Confidence 999999998876 7999999999988888643
No 71
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=38.54 E-value=7.5e+02 Score=29.45 Aligned_cols=82 Identities=15% Similarity=0.176 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHchHHHHHHHHHH
Q 007292 32 GDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQ---MISQLRENFISIERYCQECQTLIENHDQIKLLSNAR 108 (609)
Q Consensus 32 ~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~---~v~~l~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~ 108 (609)
..++.++......+...|-..++.++++. +...|.+..+ +++++++.+..++....+.+.....+++= ++.++
T Consensus 205 ~~~~~~v~~~L~~~~~~lg~~i~~~l~~~--~~~~L~~i~~l~~~~~~~~~~L~~v~~~~~~L~~~~~qL~~~--L~~vK 280 (806)
T PF05478_consen 205 SELKDHVSSDLDNIGSLLGGDIQDQLGSN--VYPALDSILDLAQAMQETKELLQNVNSSLKDLQEYQSQLRDG--LRGVK 280 (806)
T ss_pred HHHHHHHHHHHHhccchhhHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 33455555555555555555555555422 3333444444 66777777777776666666555555221 34445
Q ss_pred HHHHHHHHH
Q 007292 109 NNLSTTLKD 117 (609)
Q Consensus 109 ~nl~~t~~~ 117 (609)
+++..++..
T Consensus 281 ~~L~~~l~~ 289 (806)
T PF05478_consen 281 RDLNNTLQD 289 (806)
T ss_pred HHHHHHHHh
Confidence 555544433
No 72
>PLN02939 transferase, transferring glycosyl groups
Probab=37.43 E-value=8.3e+02 Score=29.66 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhhcCCCCchh-hHHHHHHHHH
Q 007292 8 VEAKEAAVREVAKLLTLPDQLQ-FIGDMKADYI 39 (609)
Q Consensus 8 ~~a~~~a~~~v~~ll~~p~~L~-kl~~l~~~~~ 39 (609)
..||..|+..+..+|..-+.|. +|.-+.-++.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (977)
T PLN02939 148 NQARLQALEDLEKILTEKEALQGKINILEMRLS 180 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Confidence 4688888888888887777775 5665555543
No 73
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=37.04 E-value=6.7e+02 Score=28.42 Aligned_cols=43 Identities=16% Similarity=0.267 Sum_probs=22.6
Q ss_pred HHHHHHHHHh-hhhchhHHHHHHHhhhcCChhHHHHHHHHHHHHh
Q 007292 110 NLSTTLKDVE-GMMSISVEAAEAKDSLGDDKELINTYERLTALDG 153 (609)
Q Consensus 110 nl~~t~~~l~-~l~~~~~~~~~~~~~l~~~~~LL~ah~~L~~Le~ 153 (609)
+|+.++..++ +|..+.....+-..+...|. .+.|..-|..++.
T Consensus 158 ~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD-~~~A~eil~~l~~ 201 (560)
T PF06160_consen 158 SYGPAIEELEKQLENIEEEFSEFEELTENGD-YLEAREILEKLKE 201 (560)
T ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
Confidence 4455555554 44444444444444444444 5666666665544
No 74
>KOG2346 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.16 E-value=1.2e+02 Score=33.15 Aligned_cols=106 Identities=18% Similarity=0.209 Sum_probs=68.3
Q ss_pred hhcCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHh-
Q 007292 20 KLLTLPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENF-------ISIERYCQEC- 91 (609)
Q Consensus 20 ~ll~~p~~L~kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~-------~~i~~~~~~~- 91 (609)
..++++-.|+.+=+--....++...+|+-+.+.|..-.+.--.|-..+...++++.++..+| +.|..+....
T Consensus 40 dkL~REcpLaqLidsetdMV~qIRaLDSDmqtLVYENYNKFisATdTirkmk~~f~~me~eMd~L~~~ms~i~~~s~~l~ 119 (636)
T KOG2346|consen 40 DKLPRECPLAQLIDSETDMVQQIRALDSDMQTLVYENYNKFISATDTIRKMKSNFFGMEQEMDGLEEVMSSIQSKSDGLA 119 (636)
T ss_pred HHhhhcCCHHHHHHHHHHHHHHHHHhchHHHHHHHhhcchhhhcchHHHHHHhhhhhhcchhhhHHHHHHHHhhhhcccc
Confidence 34566777777766677778889999999999987666555555555555555555444443 3333333332
Q ss_pred HHHHHchHHHHHHHHHHHHHHHHHHHHhhhhchhHHHH
Q 007292 92 QTLIENHDQIKLLSNARNNLSTTLKDVEGMMSISVEAA 129 (609)
Q Consensus 92 ~~~v~~~~~Ik~l~~~~~nl~~t~~~l~~l~~~~~~~~ 129 (609)
..+.++-++|+++...|.-+ ..+++++.+|..+.
T Consensus 120 g~L~ekre~I~kLg~~~~ll----rkvqfifdLP~rLr 153 (636)
T KOG2346|consen 120 GSLFEKRELIKKLGQRPPLL----RKVQFIFDLPRRLR 153 (636)
T ss_pred chhHHhHHHHHHhcCCccch----hhhHHHhhhHHHHH
Confidence 23334457788887776655 45888888887755
No 75
>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal
Probab=35.73 E-value=4.9e+02 Score=28.47 Aligned_cols=91 Identities=16% Similarity=0.205 Sum_probs=47.5
Q ss_pred CCchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHchHHHHHH
Q 007292 25 PDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLIENHDQIKLL 104 (609)
Q Consensus 25 p~~L~kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~~~Ik~l 104 (609)
|..++++..+..++. +..++..+|.+.+..+...++.-+-..++|+ +-..+..+++...+...+ +=+.|+.-
T Consensus 303 P~~~~el~~~l~~V~-~~~~vr~~ltaemAd~~~~ik~llvrAEDaR-----l~~d~~~m~k~y~~l~~~--n~~l~~~~ 374 (431)
T PF14782_consen 303 PDEMEELREILEKVD-ELNEVRQRLTAEMADHSNLIKSLLVRAEDAR-----LMGDMKNMRKYYAELYDL--NRDLINEY 374 (431)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHhhhHH-----HhhhHHHHHHHHHHHHHH--HHHHHHHH
Confidence 445555666655554 3667778888888877777776665555554 223333333333332221 11122222
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 007292 105 SNARNNLSTTLKDVEGMMS 123 (609)
Q Consensus 105 ~~~~~nl~~t~~~l~~l~~ 123 (609)
.....|-...+..||.+..
T Consensus 375 ~~R~~N~~~l~~~lk~vn~ 393 (431)
T PF14782_consen 375 KIRCNNHEELLSSLKEVNQ 393 (431)
T ss_pred HHHhhhHHHHHHHHHHHHH
Confidence 3345555555555555544
No 76
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=35.43 E-value=7.8e+02 Score=28.74 Aligned_cols=77 Identities=9% Similarity=0.122 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHchHHHHHH--HHHHHHHHHHHHHHhhhhchh
Q 007292 48 QLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLIENHDQIKLL--SNARNNLSTTLKDVEGMMSIS 125 (609)
Q Consensus 48 qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~~~Ik~l--~~~~~nl~~t~~~l~~l~~~~ 125 (609)
+|...+.++-.-++.+++.|.+.+.++.+ .+....++++.....+-|-++ +-.+-.+..++..-+++--+.
T Consensus 210 ~l~~~~~~w~k~v~~~le~l~elq~a~~e-------l~~~l~~ae~~~~~w~pvgdl~idsl~~h~e~~~~~~~ei~p~~ 282 (966)
T KOG4286|consen 210 KLNLHSADWQRKIDETLERLQELQEATDE-------LDLKLRQAEVIKGSWQPVGDLLIDSLQDHLEKVKALRGEIAPLK 282 (966)
T ss_pred HhCcchhhHHHHHHHHHHHHHHHHHHHHH-------HHHhhhHHHhhhhccccHHHHHHhHHHHHHHHHHHHHhhcchHh
Confidence 44444555555555555555555544444 444445555555544444333 233344444444444444444
Q ss_pred HHHHHH
Q 007292 126 VEAAEA 131 (609)
Q Consensus 126 ~~~~~~ 131 (609)
..|..+
T Consensus 283 ~~v~~v 288 (966)
T KOG4286|consen 283 ENVSHV 288 (966)
T ss_pred hchhhH
Confidence 444333
No 77
>PF08649 DASH_Dad1: DASH complex subunit Dad1; InterPro: IPR013958 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules []. Throughout the cell cycle Dad1 remains bound to kinetochores and its association is dependent on the Mis6 and Mal2 [].
Probab=35.37 E-value=2e+02 Score=21.90 Aligned_cols=54 Identities=15% Similarity=0.205 Sum_probs=37.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 007292 38 YIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLI 95 (609)
Q Consensus 38 ~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v 95 (609)
+.+++..+-.++. .-++.+-.+++.|......+..+-.++..|..++......+
T Consensus 3 Fe~qR~~Li~eI~----~~~e~vl~nlN~LNRsLE~~i~VGkEF~~V~~LW~~F~~~m 56 (58)
T PF08649_consen 3 FERQRDRLIQEIS----ESMESVLNNLNALNRSLESVISVGKEFESVSSLWSQFYNGM 56 (58)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 3444444444444 44667777888888888888888888888888887765543
No 78
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.33 E-value=6.9e+02 Score=28.10 Aligned_cols=167 Identities=14% Similarity=0.129 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHH-----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHchHHHHH
Q 007292 31 IGDMKADYIARQQANDSQLSTMVA-EQIEQAQT-----GLE-SLALSEQMISQLRENFISIERYCQECQTLIENHDQIKL 103 (609)
Q Consensus 31 l~~l~~~~~~~k~s~~~qLk~~v~-~ql~~~~~-----gl~-~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~~~Ik~ 103 (609)
++.++..+.-...++...+-..+. .+-|=|.- |+. .|...+..++++++++..+++...++....+ .+
T Consensus 48 letLrddLrlylksl~~aMieLIN~DYADFVnLStnLVgld~aln~i~qpL~qlreei~s~rgsV~ea~~alr-----~q 122 (705)
T KOG2307|consen 48 LETLRDDLRLYLKSLQNAMIELINDDYADFVNLSTNLVGLDDALNKIEQPLNQLREEIKSTRGSVGEAERALR-----QQ 122 (705)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHH-----HH
Confidence 556666777777777766665552 33333321 111 1334445555666666555555554433222 12
Q ss_pred HHHHHHHHHHHHHHHhhhhchhHHHHHHHhhhcCCh---------hHHHHHHHHHHHHhHHHHHHHHHhhchHHHHHHHH
Q 007292 104 LSNARNNLSTTLKDVEGMMSISVEAAEAKDSLGDDK---------ELINTYERLTALDGKRRFALAAAESHKEEVGRLRE 174 (609)
Q Consensus 104 l~~~~~nl~~t~~~l~~l~~~~~~~~~~~~~l~~~~---------~LL~ah~~L~~Le~~rd~~l~~~~~~~~d~~~L~~ 174 (609)
.+-+..|=.. ...+-.++.+...++++.++|..-| .|-.|-..|.+|.-+-. +..++ .+..
T Consensus 123 ~se~~~~Re~-k~~lldl~~v~~~ieKL~k~L~s~psk~q~~~a~sLERiAlelnqlkf~a~----h~k~~-----l~p~ 192 (705)
T KOG2307|consen 123 CSELCSNREK-KIELLDLIYVLVAIEKLSKMLLSPPSKEQQDGATSLERIALELNQLKFHAS----HLKGS-----LFPH 192 (705)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHHHH----Hhhcc-----cCcc
Confidence 3333333222 2234445556677888888884322 23333333333322111 11111 2222
Q ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHH
Q 007292 175 YFEDVDQIWETFEKTLWGYISNFYKLSKESPQTLVRALRVV 215 (609)
Q Consensus 175 ~F~~v~~l~~~f~~~l~~i~~~~l~~~~~~~~~lv~~~rIi 215 (609)
.-+++..+...+.+.+..++.+.+ +++++.+-.|+||-
T Consensus 193 ~e~ria~~~~~L~qsl~~lf~egl---qsa~~~l~nclriY 230 (705)
T KOG2307|consen 193 SEERIAAEKIILSQSLAVLFAEGL---QSAAGDLQNCLRIY 230 (705)
T ss_pred hhhHHhhHHHHHHHHHHHHHHHHh---hccHHHHHHHHHHH
Confidence 234466677777888888777777 45788888888873
No 79
>PHA03386 P10 fibrous body protein; Provisional
Probab=34.68 E-value=2.1e+02 Score=23.86 Aligned_cols=45 Identities=13% Similarity=0.198 Sum_probs=20.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007292 42 QQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERY 87 (609)
Q Consensus 42 k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~ 87 (609)
..+++.+.-+ +|.|+++++.....|..--..+..+...+.+|...
T Consensus 14 Ikavd~KVda-LQ~qV~dv~~n~~~LDa~~~qL~~l~tkV~~Iq~i 58 (94)
T PHA03386 14 VQEVDTKVDA-LQTQLNGLEEDSQPLDGLPAQLTELDTKVSDIQSI 58 (94)
T ss_pred HHHHhhHHHH-HHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHh
Confidence 3344444432 25555555554444444444444444444444433
No 80
>PRK10807 paraquat-inducible protein B; Provisional
Probab=34.62 E-value=5.1e+02 Score=29.29 Aligned_cols=7 Identities=29% Similarity=0.226 Sum_probs=2.8
Q ss_pred CCchhhH
Q 007292 25 PDQLQFI 31 (609)
Q Consensus 25 p~~L~kl 31 (609)
|..|+.|
T Consensus 412 ps~l~~l 418 (547)
T PRK10807 412 SGGLAQI 418 (547)
T ss_pred CCCHHHH
Confidence 3444433
No 81
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=34.43 E-value=8.1e+02 Score=28.61 Aligned_cols=49 Identities=8% Similarity=0.138 Sum_probs=30.4
Q ss_pred hHHHHHch-HHHHHHHHHHHHHHHHHHHHhhhhc-hh--HHHHHHHhhhcCCh
Q 007292 91 CQTLIENH-DQIKLLSNARNNLSTTLKDVEGMMS-IS--VEAAEAKDSLGDDK 139 (609)
Q Consensus 91 ~~~~v~~~-~~Ik~l~~~~~nl~~t~~~l~~l~~-~~--~~~~~~~~~l~~~~ 139 (609)
....+-.+ ....-.+.+|++|..+-+-+.++.. +| +..+..+..|++.|
T Consensus 454 ~Te~lL~Le~kms~s~AA~sQF~~AyqLV~~iaGE~~RS~A~~~A~~llR~~p 506 (1480)
T COG3096 454 ATEKLLSLEQKMSMAQAAHSQFEQAYQLVVAIAGELARSEAWDVARELLREGP 506 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhCccchhhHHHHHHHHHHhCh
Confidence 33333344 4455568899999998888777633 22 23555667777764
No 82
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=34.12 E-value=7.4e+02 Score=28.09 Aligned_cols=137 Identities=16% Similarity=0.143 Sum_probs=68.0
Q ss_pred HHHHHhhcCCCCchhhHHHHHHHHHH----HHhhHHHHHHHHHHHHHHH-----HH----HHHHHHHHHHHHHHHHHHHH
Q 007292 15 VREVAKLLTLPDQLQFIGDMKADYIA----RQQANDSQLSTMVAEQIEQ-----AQ----TGLESLALSEQMISQLRENF 81 (609)
Q Consensus 15 ~~~v~~ll~~p~~L~kl~~l~~~~~~----~k~s~~~qLk~~v~~ql~~-----~~----~gl~~L~~a~~~v~~l~~~~ 81 (609)
+.+|..|=-..+++.+.+.+++.... ....++..|..+ ..++++ ++ ..-..|..+...+..+++.+
T Consensus 50 l~kvk~l~l~Ges~~~f~~w~~~~~~i~~~~~~~ie~~l~~a-e~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l 128 (569)
T PRK04778 50 LEKVKKLNLTGQSEEKFEEWRQKWDEIVTNSLPDIEEQLFEA-EELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEEL 128 (569)
T ss_pred HHHHhcCCCCcccHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455554467777777777777654 445555555544 222221 11 11123444444555555555
Q ss_pred HHHHHHHHHhHHHHH----chHHHHHHHHH-HHHHHHHHHHHh-hhhchhHHHHHHHhhhcCChhHHHHHHHHHHHHh
Q 007292 82 ISIERYCQECQTLIE----NHDQIKLLSNA-RNNLSTTLKDVE-GMMSISVEAAEAKDSLGDDKELINTYERLTALDG 153 (609)
Q Consensus 82 ~~i~~~~~~~~~~v~----~~~~Ik~l~~~-~~nl~~t~~~l~-~l~~~~~~~~~~~~~l~~~~~LL~ah~~L~~Le~ 153 (609)
.++.+.-++....|. .|+.+|+--.+ .-.|+.++..++ .|..+....++-..+...|. .+.|+..|..++.
T Consensus 129 ~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd-~~~A~e~l~~l~~ 205 (569)
T PRK04778 129 QELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGD-YVEAREILDQLEE 205 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH
Confidence 554444444333322 33333332222 223445555555 44444445555545555555 7788888877755
No 83
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=34.08 E-value=7.4e+02 Score=28.06 Aligned_cols=112 Identities=14% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH--------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHchHHHH
Q 007292 32 GDMKADYIARQQANDSQLSTMVAEQIEQA--------QTGLESLALS-EQMISQLRENFISIERYCQECQTLIENHDQIK 102 (609)
Q Consensus 32 ~~l~~~~~~~k~s~~~qLk~~v~~ql~~~--------~~gl~~L~~a-~~~v~~l~~~~~~i~~~~~~~~~~v~~~~~Ik 102 (609)
..++.++.++...+..+|+..+..|-... ...++.-... ...+.++..++..+.............-..+.
T Consensus 329 ~~L~~eL~~~~~~~~~~l~~~l~~~~~e~~~~~~~~i~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~ 408 (582)
T PF09731_consen 329 EELRQELKRQEEAHEEHLKNELREQAIELQREFEKEIKEKVEQERNGRLAKLAELNSRLKALEEALDARSEAEDENRRAQ 408 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhh--hhchhHHHHHHHhhhcCChhHHHH
Q 007292 103 LLSNARNNLSTTLKDVEG--MMSISVEAAEAKDSLGDDKELINT 144 (609)
Q Consensus 103 ~l~~~~~nl~~t~~~l~~--l~~~~~~~~~~~~~l~~~~~LL~a 144 (609)
++..+=.+|..++..=.. -.-+...+..++....+++ |+.+
T Consensus 409 ~l~~a~~~l~~~l~~~~~~~~~p~~~el~~l~~~~~~d~-~v~~ 451 (582)
T PF09731_consen 409 QLWLAVDALKSALDSGNAGSPRPFEDELRALKELAPDDE-LVDA 451 (582)
T ss_pred HHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHhCCCCh-HHHH
No 84
>PF11571 Med27: Mediator complex subunit 27; InterPro: IPR021627 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Mediator exists in two major forms in human cells: a smaller form that interacts strongly with pol II and activates transcription, and a large form that does not interact strongly with pol II and does not directly activate transcription. The ubiquitous expression of Med27 mRNA suggests a universal requirement for Med27 in transcriptional initiation. Loss of Crsp34/Med27 decreases amacrine cell number, but increases the number of rod photoreceptor cells [].
Probab=33.80 E-value=59 Score=27.02 Aligned_cols=50 Identities=16% Similarity=0.446 Sum_probs=37.8
Q ss_pred hccccccccccHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhHHHHhchhHHhHHh
Q 007292 321 YVAPCFPPRYEIFQLMVNLYTERFIQMLRLLSDRANELTNIEILKVTGWVVEYQDN 376 (609)
Q Consensus 321 ~~~~~FPp~~~I~~~~~~~yh~~l~~~L~~l~~~~~~l~~~~ll~lL~wv~~Y~~~ 376 (609)
.+.+--|.+|+||+..+.--+.++...+.. -.....+..+++|+..|.+.
T Consensus 3 ~~~~~~~S~~~v~~~~t~~a~~al~~~~~~------~~~~~~l~~ll~~l~sY~~l 52 (90)
T PF11571_consen 3 GVDPWSPSRYKVFRKITEHANTALLHFINS------RPPEWDLRSLLDWLSSYRNL 52 (90)
T ss_pred ccccccchhhhhhhhhhHHHHHHHHHhhhc------CCCccHHHHHHHHHHHHhhh
Confidence 345667888999999988887777666642 34557799999999889764
No 85
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=33.41 E-value=1e+03 Score=29.43 Aligned_cols=37 Identities=11% Similarity=0.282 Sum_probs=19.1
Q ss_pred hhhchhHHHHHHHhhhc-CChhHHHHHHHHHHHHhHHH
Q 007292 120 GMMSISVEAAEAKDSLG-DDKELINTYERLTALDGKRR 156 (609)
Q Consensus 120 ~l~~~~~~~~~~~~~l~-~~~~LL~ah~~L~~Le~~rd 156 (609)
+|..+...+.+..-.+. .+.|+-.+-..+..++.-..
T Consensus 915 ~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~ 952 (1293)
T KOG0996|consen 915 QLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIE 952 (1293)
T ss_pred HHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHH
Confidence 33334334444433342 33457777777777765443
No 86
>PHA03332 membrane glycoprotein; Provisional
Probab=33.32 E-value=9.6e+02 Score=29.23 Aligned_cols=20 Identities=5% Similarity=0.127 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 007292 66 SLALSEQMISQLRENFISIE 85 (609)
Q Consensus 66 ~L~~a~~~v~~l~~~~~~i~ 85 (609)
+|-.+..+++++++.|....
T Consensus 885 ~llqnaaaia~mksaIg~tN 904 (1328)
T PHA03332 885 QLLQATAATAEMASKIGGLN 904 (1328)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444433333
No 87
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=32.92 E-value=3.2e+02 Score=25.79 Aligned_cols=30 Identities=0% Similarity=0.090 Sum_probs=20.5
Q ss_pred cCCCCchhhHHHHHHHHHHHHhhHHHHHHH
Q 007292 22 LTLPDQLQFIGDMKADYIARQQANDSQLST 51 (609)
Q Consensus 22 l~~p~~L~kl~~l~~~~~~~k~s~~~qLk~ 51 (609)
||+-+|++++..+--.+..+..-++.++-.
T Consensus 68 lPSr~DiarvA~lvinlE~kvD~lee~fdd 97 (189)
T TIGR02132 68 VPTKEDIANVASLVINLEEKVDLIEEFFDD 97 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777777777766665544
No 88
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=32.83 E-value=8e+02 Score=28.08 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007292 30 FIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLA 68 (609)
Q Consensus 30 kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~ 68 (609)
.......+-.++..+++.+|... .++++.....+..+.
T Consensus 318 ~~~~~~~~~~~el~~l~~~l~~l-~~~i~~~~~~~~~l~ 355 (594)
T PF05667_consen 318 TEEDEQEEQEQELEELQEQLDEL-ESQIEELEAEIKMLK 355 (594)
T ss_pred chhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34444555566666666665553 555555554444443
No 89
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=32.66 E-value=4e+02 Score=24.51 Aligned_cols=24 Identities=4% Similarity=-0.133 Sum_probs=8.8
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHH
Q 007292 29 QFIGDMKADYIARQQANDSQLSTM 52 (609)
Q Consensus 29 ~kl~~l~~~~~~~k~s~~~qLk~~ 52 (609)
..|+.--+++......+=..|+..
T Consensus 55 ~~LE~~a~~ia~svd~ll~~L~~~ 78 (149)
T PF10157_consen 55 HDLERDAQAIAESVDSLLRSLRSS 78 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 90
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=32.61 E-value=8.8e+02 Score=28.48 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhhHHHHHHHH
Q 007292 33 DMKADYIARQQANDSQLSTM 52 (609)
Q Consensus 33 ~l~~~~~~~k~s~~~qLk~~ 52 (609)
.....+..+...++.++...
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l 307 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADL 307 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555566555544
No 91
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=32.41 E-value=5.2e+02 Score=25.80 Aligned_cols=42 Identities=12% Similarity=0.061 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007292 46 DSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQE 90 (609)
Q Consensus 46 ~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~ 90 (609)
...+-+.+.+||+...+- ..++....+.++.+...++.....
T Consensus 43 SrE~EaelesqL~q~etr---nrdl~t~nqrl~~E~e~~Kek~e~ 84 (333)
T KOG1853|consen 43 SREIEAELESQLDQLETR---NRDLETRNQRLTTEQERNKEKQED 84 (333)
T ss_pred hHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777766643 455667777777777777766554
No 92
>PF00522 VPR: VPR/VPX protein; InterPro: IPR000012 Human immunodeficiency virus (HIV) is the human retrovirus associated with AIDS (acquired immune deficiency syndrome), and SIV its simian counterpart. Three main groups of primate lentivirus are known, designated Human immunodeficiency virus 1 (HIV-1), Human immunodeficiency virus 2 (HIV-2)/Simian immunodeficiency virus - mac (SIVMAC)/Simian immunodeficiency virus - sm (SIVSM) and Simian immunodeficiency virus - agm (SIVAGM). Simian immunodeficiency virus - mnd (SIVMND) has been suggested to represent a fourth distinct group []. These groups are believed to have diverged from a common ancestor long before the spread of AIDS in humans. Genetic variation in HIV-1 and HIV-2 has been studied extensively, and the nucleotide sequences reported for several strains []. ORF analysis has revealed two open reading frames, yielding the so-called R- and X-ORF proteins, which show a high degree of sequence similarity. Vpx plays a role in nuclear translocation of the viral pre-integration complex (PIC) and is thus required for the virus to infect non-dividing cells. Vpr also plays a role in nuclear translocation of the (PIC) and may target specific host proteins for degradation by the 26S proteasome. It acts by associating with the cellular CUL4A-DDB1 E3 ligase complex through direct interaction with host VPRPB/DCAF-1. This would result in cell cycle arrest or apoptosis in infected cells, creating a favourable environment for maximizing viral expression and production by rendering the HIV-1 LTR transcription more active.; GO: 0019058 viral infectious cycle, 0042025 host cell nucleus; PDB: 1VPC_A 1X9V_B 1ESX_A 1CEU_A 1M8L_A 1DSJ_A 1BDE_A 1DSK_A 1FI0_A.
Probab=31.85 E-value=33 Score=28.94 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhccccccccc--cHHHHHHHHHHH
Q 007292 310 TIGEELADIYDYVAPCFPPRY--EIFQLMVNLYTE 342 (609)
Q Consensus 310 ~~~~dL~~v~~~~~~~FPp~~--~I~~~~~~~yh~ 342 (609)
|+.+-|..++...+..||+.| .+.+.....||.
T Consensus 21 Wl~~~Leelk~EAvrHFpr~~L~~lgq~i~e~~gD 55 (96)
T PF00522_consen 21 WLLELLEELKEEAVRHFPREWLFGLGQYIYETYGD 55 (96)
T ss_dssp HHHHHHHHHHHHHHHSTCCCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHhhHHhhccCc
Confidence 677777778888899999998 666666666643
No 93
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.78 E-value=4.5e+02 Score=24.86 Aligned_cols=34 Identities=6% Similarity=0.196 Sum_probs=15.6
Q ss_pred HHHHHhHHHHHchHHHHHHHHHHHHHHHHHHHHh
Q 007292 86 RYCQECQTLIENHDQIKLLSNARNNLSTTLKDVE 119 (609)
Q Consensus 86 ~~~~~~~~~v~~~~~Ik~l~~~~~nl~~t~~~l~ 119 (609)
.+...++.+-+.++-++++...-|.+.+++++++
T Consensus 186 ~lLAk~EEi~ksm~pv~~La~qir~irRlve~le 219 (222)
T KOG4514|consen 186 QLLAKAEEITKSMKPVEQLAQQIRQIRRLVEMLE 219 (222)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3333444444445555444444444444444444
No 94
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=31.65 E-value=4.5e+02 Score=24.81 Aligned_cols=96 Identities=9% Similarity=0.217 Sum_probs=0.0
Q ss_pred CchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHch-HHHHHH
Q 007292 26 DQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLIENH-DQIKLL 104 (609)
Q Consensus 26 ~~L~kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~-~~Ik~l 104 (609)
+...+|..=-.....+...+=..+...+..-...+..+...+......+.++.+.+..|.....+....++++ ..+++.
T Consensus 82 ~eir~LA~~t~~~~~~I~~~i~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~i~~~~~~i~~~i~~i~~~~~~~ 161 (213)
T PF00015_consen 82 DEIRKLAEQTSESAKEISEIIEEIQEQISQVVESMEESREQIEEGSESVEETSESLEEIAESVEEISDSIEEISESAEEQ 161 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhcccchhcchhhhhhhhhhhHHhhhhHHHHhhHHHH
Q ss_pred HHHHHHHHHHHHHHhhh
Q 007292 105 SNARNNLSTTLKDVEGM 121 (609)
Q Consensus 105 ~~~~~nl~~t~~~l~~l 121 (609)
...-.++...+..+...
T Consensus 162 ~~~~~~i~~~i~~i~~~ 178 (213)
T PF00015_consen 162 SESIEQINESIEEISEI 178 (213)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
No 95
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=31.27 E-value=7.8e+02 Score=27.47 Aligned_cols=31 Identities=13% Similarity=0.263 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHhhcCCCCchhhHHHHHHHH
Q 007292 7 GVEAKEAAVREVAKLLTLPDQLQFIGDMKADY 38 (609)
Q Consensus 7 ~~~a~~~a~~~v~~ll~~p~~L~kl~~l~~~~ 38 (609)
..+++...+..|..+|..|++ ..|......+
T Consensus 94 ~~~~~~~~l~~le~~f~~~~~-~gl~~~l~~f 124 (507)
T PRK07739 94 YWETKADALSQMEDIMNEPSD-TGLNKVLDQF 124 (507)
T ss_pred hHHHHHHHHHHHHHHhCCCCc-chHHHHHHHH
Confidence 456778888999999998875 3344443333
No 96
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=31.19 E-value=1.1e+03 Score=29.40 Aligned_cols=10 Identities=30% Similarity=0.268 Sum_probs=4.0
Q ss_pred HHHHhHHHHH
Q 007292 149 TALDGKRRFA 158 (609)
Q Consensus 149 ~~Le~~rd~~ 158 (609)
..++.-|+.+
T Consensus 500 ~~~~~~~~~a 509 (1201)
T PF12128_consen 500 QELRKERDQA 509 (1201)
T ss_pred HHHHHHHHHH
Confidence 3333444433
No 97
>PRK04863 mukB cell division protein MukB; Provisional
Probab=30.92 E-value=1.3e+03 Score=29.81 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007292 55 EQIEQAQTGLESLALSEQMISQLRENFISIERYC 88 (609)
Q Consensus 55 ~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~ 88 (609)
.++...+..+..++.-....++....+..++.+|
T Consensus 397 eqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~ 430 (1486)
T PRK04863 397 SQLADYQQALDVQQTRAIQYQQAVQALERAKQLC 430 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444455555666666
No 98
>PRK11546 zraP zinc resistance protein; Provisional
Probab=30.90 E-value=1.9e+02 Score=26.35 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=37.4
Q ss_pred CCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 007292 24 LPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTG----LESLALSEQMISQLRENFI 82 (609)
Q Consensus 24 ~p~~L~kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~g----l~~L~~a~~~v~~l~~~~~ 82 (609)
+|++-++++.+.+++..+-..+..+|.+- +..|.+...+ -+.+.....+|..|+.++.
T Consensus 45 T~EQQa~~q~I~~~f~~~t~~LRqqL~aK-r~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~ 106 (143)
T PRK11546 45 TTEQQAAWQKIHNDFYAQTSALRQQLVSK-RYEYNALLTANPPDSSKINAVAKEMENLRQSLD 106 (143)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 67788899999999999999988888766 4444443222 2234444455555555443
No 99
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=30.40 E-value=8.9e+02 Score=27.88 Aligned_cols=31 Identities=13% Similarity=0.251 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHhhcCCCCchhhHHHHHHHH
Q 007292 7 GVEAKEAAVREVAKLLTLPDQLQFIGDMKADY 38 (609)
Q Consensus 7 ~~~a~~~a~~~v~~ll~~p~~L~kl~~l~~~~ 38 (609)
..+++...+.+|..+|..|++ ..|......+
T Consensus 94 ~~~~~~~~l~~le~if~e~~~-~gl~~~l~~f 124 (627)
T PRK06665 94 YWKTKDKYLSQLEQVYNEPED-QSLRTRLDDF 124 (627)
T ss_pred HHHHHHHHHHHHHHHhCCCCC-CcHHHHHHHH
Confidence 356788888999999988774 3344333333
No 100
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=30.39 E-value=7.2e+02 Score=26.81 Aligned_cols=82 Identities=10% Similarity=0.084 Sum_probs=40.2
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHch--HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHhhhcCC
Q 007292 62 TGLESLAL-SEQMISQLRENFISIERYCQECQTLIENH--DQIKLLSNARNNLSTTLKDVEGMMSISVEAAEAKDSLGDD 138 (609)
Q Consensus 62 ~gl~~L~~-a~~~v~~l~~~~~~i~~~~~~~~~~v~~~--~~Ik~l~~~~~nl~~t~~~l~~l~~~~~~~~~~~~~l~~~ 138 (609)
..++.|++ .+.+++-+.+.+.+-+-.++..+..+.++ -+-.++...+.+|..+.+.+..... +..+|-
T Consensus 233 ~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~---------eRaRdi 303 (395)
T PF10267_consen 233 ESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSY---------ERARDI 303 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---------HHHhHH
Confidence 33444443 45555555555555555555555555555 2234445555555554444443322 222221
Q ss_pred -hhHHHHHHHHHHHH
Q 007292 139 -KELINTYERLTALD 152 (609)
Q Consensus 139 -~~LL~ah~~L~~Le 152 (609)
.++-....++..||
T Consensus 304 ~E~~Es~qtRisklE 318 (395)
T PF10267_consen 304 WEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHH
Confidence 12555566677777
No 101
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=30.36 E-value=8.7e+02 Score=27.77 Aligned_cols=40 Identities=10% Similarity=0.040 Sum_probs=29.6
Q ss_pred HHHHHHHHhhcCCC-CchhhHHHHHHHHHHHHhhHHHHHHH
Q 007292 12 EAAVREVAKLLTLP-DQLQFIGDMKADYIARQQANDSQLST 51 (609)
Q Consensus 12 ~~a~~~v~~ll~~p-~~L~kl~~l~~~~~~~k~s~~~qLk~ 51 (609)
-...+++.++|++| ..+.+|..+...-.++...+..|--.
T Consensus 379 ~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~ 419 (594)
T PF05667_consen 379 LKLKKKTVELLPDAEENIAKLQALVEASEQRLVELAQQWEK 419 (594)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455688899986 77888888888888888777666543
No 102
>PRK02224 chromosome segregation protein; Provisional
Probab=29.70 E-value=1e+03 Score=28.41 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007292 66 SLALSEQMISQLRENFISIERYCQEC 91 (609)
Q Consensus 66 ~L~~a~~~v~~l~~~~~~i~~~~~~~ 91 (609)
.|...+..+.++.+.+..........
T Consensus 207 ~l~~~~~~l~el~~~i~~~~~~~~~l 232 (880)
T PRK02224 207 RLNGLESELAELDEEIERYEEQREQA 232 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554444443333
No 103
>PRK11281 hypothetical protein; Provisional
Probab=29.33 E-value=8.2e+02 Score=30.36 Aligned_cols=12 Identities=17% Similarity=0.235 Sum_probs=4.9
Q ss_pred cchhHHhhhHHH
Q 007292 530 VNFEDACKGFLE 541 (609)
Q Consensus 530 i~~~~~~~~f~~ 541 (609)
++.+.+......
T Consensus 774 ~~~~~i~~~~~~ 785 (1113)
T PRK11281 774 LALEQVNQQSLR 785 (1113)
T ss_pred CCHHHHHHHHHH
Confidence 344444433333
No 104
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=29.27 E-value=2.9e+02 Score=22.82 Aligned_cols=53 Identities=11% Similarity=0.210 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh-hHHHHHHH-HHHHHHHHHHHHHhccccccccc
Q 007292 278 YEQIRKAVERRFNKLLTELVFE-DLKAALEE-ARTIGEELADIYDYVAPCFPPRY 330 (609)
Q Consensus 278 ~~~i~~sv~~~~~~~~~~~~~~-d~~~~Ld~-~~~~~~dL~~v~~~~~~~FPp~~ 330 (609)
+..+....+.|+......|..+ ..+..+.. +.|++.=+..++..+..-||..|
T Consensus 34 L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~~~yP~~y 88 (88)
T PF10241_consen 34 LLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLAKQYPEEY 88 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 3455566667777665555421 11222222 45888888999999999999876
No 105
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=29.01 E-value=7.2e+02 Score=26.53 Aligned_cols=61 Identities=11% Similarity=0.212 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHchHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHhhh
Q 007292 74 ISQLRENFISIERYCQECQTLIENHDQIKLLSNARNNLSTTLKDVEGMMSISVEAAEAKDSL 135 (609)
Q Consensus 74 v~~l~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~t~~~l~~l~~~~~~~~~~~~~l 135 (609)
+..++.++.++.....+. +...+-...+.+...+..+...++.++.+.......+.+.+++
T Consensus 25 l~~~~~~~~~l~~~l~~p-~~~~d~~~~~~l~ke~~~L~~iv~~~~~l~~~~~e~~~~~ell 85 (367)
T PRK00578 25 VDALKERLEELEAEAEDP-DFWNDQERAQKVTKELSSLKAKLDTLEELRQRLDDLEELLELA 85 (367)
T ss_pred HHHHHHHHHHHHHHhcCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555443 3334556666777777777777777777766655555555555
No 106
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=28.51 E-value=9.6e+02 Score=27.66 Aligned_cols=8 Identities=13% Similarity=0.517 Sum_probs=3.4
Q ss_pred HHHHhccH
Q 007292 172 LREYFEDV 179 (609)
Q Consensus 172 L~~~F~~v 179 (609)
+..+|+.+
T Consensus 511 ~~~~f~~l 518 (650)
T TIGR03185 511 ITKSFKKL 518 (650)
T ss_pred HHHHHHHH
Confidence 34444443
No 107
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=28.28 E-value=1.1e+03 Score=28.43 Aligned_cols=33 Identities=21% Similarity=0.458 Sum_probs=28.0
Q ss_pred hccccccccccHHHHHHH----HHHHHHHHHHHHHhh
Q 007292 321 YVAPCFPPRYEIFQLMVN----LYTERFIQMLRLLSD 353 (609)
Q Consensus 321 ~~~~~FPp~~~I~~~~~~----~yh~~l~~~L~~l~~ 353 (609)
.+..|=|..|-+|+..-. .|..+++.+++++..
T Consensus 1113 aIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~ 1149 (1200)
T KOG0964|consen 1113 AIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSD 1149 (1200)
T ss_pred HHHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHhh
Confidence 357999999999988764 899999999999874
No 108
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=28.17 E-value=1.1e+03 Score=28.42 Aligned_cols=118 Identities=13% Similarity=0.196 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHch-HHHHHHHHHHHHHHHHHHHHhh-hhchhHHHHHHHhhhcCChhHHHH
Q 007292 67 LALSEQMISQLRENFISIERYCQECQTLIENH-DQIKLLSNARNNLSTTLKDVEG-MMSISVEAAEAKDSLGDDKELINT 144 (609)
Q Consensus 67 L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~-~~Ik~l~~~~~nl~~t~~~l~~-l~~~~~~~~~~~~~l~~~~~LL~a 144 (609)
+.+.+..+..++..+.+++..+..+.+.++.. -+++....-|.-+.+.+.+++. ..++.+...... ..|..+
T Consensus 680 ~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~------~~Le~i 753 (1200)
T KOG0964|consen 680 LKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKG------KELEEI 753 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHH------HHHHHH
Confidence 33344444445555555554444444444444 3344444444555444444442 222222211111 124444
Q ss_pred HHHHHHHHhHHH----HHHHHH--hhchHHHHHHHHHhccHHHHHHHHHHHH
Q 007292 145 YERLTALDGKRR----FALAAA--ESHKEEVGRLREYFEDVDQIWETFEKTL 190 (609)
Q Consensus 145 h~~L~~Le~~rd----~~l~~~--~~~~~d~~~L~~~F~~v~~l~~~f~~~l 190 (609)
-.+|..++.-+. ++-... .-++++..++...-..++.+...|....
T Consensus 754 ~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~ 805 (1200)
T KOG0964|consen 754 KTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALR 805 (1200)
T ss_pred HHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 444544444333 222221 1235566667766666777666555443
No 109
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=27.94 E-value=2.7e+02 Score=21.01 Aligned_cols=30 Identities=13% Similarity=0.194 Sum_probs=12.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007292 41 RQQANDSQLSTMVAEQIEQAQTGLESLALSE 71 (609)
Q Consensus 41 ~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~ 71 (609)
+..++++.+.+. +++.+..+..++.+.+..
T Consensus 8 ~~~~~~~~i~tv-k~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 8 ELPRIESSINTV-KKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 333344443332 555555544444444333
No 110
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=27.68 E-value=1.3e+03 Score=28.85 Aligned_cols=204 Identities=18% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCCCchh-hHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
Q 007292 11 KEAAVREVAKLLTLPDQLQ-FIGDMKADYIARQQANDSQ--LSTMVAEQIEQAQTGLESLALSEQ--------MISQLRE 79 (609)
Q Consensus 11 ~~~a~~~v~~ll~~p~~L~-kl~~l~~~~~~~k~s~~~q--Lk~~v~~ql~~~~~gl~~L~~a~~--------~v~~l~~ 79 (609)
.......+.........+. .+..+..++...+..+... +...+...........+.+..... .+..+++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 383 (1163)
T COG1196 304 ISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALRE 383 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhHHHHHch-HHHHHHHHHHHHHHHHHHHH---------------hhhhchhHHHHHHHhhhcCC-hhHH
Q 007292 80 NFISIERYCQECQTLIENH-DQIKLLSNARNNLSTTLKDV---------------EGMMSISVEAAEAKDSLGDD-KELI 142 (609)
Q Consensus 80 ~~~~i~~~~~~~~~~v~~~-~~Ik~l~~~~~nl~~t~~~l---------------~~l~~~~~~~~~~~~~l~~~-~~LL 142 (609)
++..+.....+..+-+... ..|..+......+..-++.+ .++..+...+..+...+.+- ..+-
T Consensus 384 ~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 463 (1163)
T COG1196 384 ELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLK 463 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhchHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHH
Q 007292 143 NTYERLTALDGKRRFALAAAESHKEEVGRLREYFED---VDQIWETFEKTLWGYISNFYKLSKESPQTLVRALRVV 215 (609)
Q Consensus 143 ~ah~~L~~Le~~rd~~l~~~~~~~~d~~~L~~~F~~---v~~l~~~f~~~l~~i~~~~l~~~~~~~~~lv~~~rIi 215 (609)
.+...+..+..-...+...++........+...... +..+.......+-.+++.+.++.+-++ -...|+.++
T Consensus 464 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Gv~G~v~~li~v~~-~y~~Aie~a 538 (1163)
T COG1196 464 ELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAELIKVKE-KYETALEAA 538 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhccCCCccchHHHhcCcCh-HHHHHHHHH
No 111
>PHA03332 membrane glycoprotein; Provisional
Probab=27.59 E-value=1.2e+03 Score=28.48 Aligned_cols=68 Identities=16% Similarity=0.258 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHch-HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHhhh
Q 007292 66 SLALSEQMISQLRENFIS---IERYCQECQTLIENH-DQIKLLSNARNNLSTTLKDVEGMMSISVEAAEAKDSL 135 (609)
Q Consensus 66 ~L~~a~~~v~~l~~~~~~---i~~~~~~~~~~v~~~-~~Ik~l~~~~~nl~~t~~~l~~l~~~~~~~~~~~~~l 135 (609)
+|.-+...++++-++-.. +++........|+.. +.|.++...--+++.++ =++|..++.++..+++.+
T Consensus 875 AL~va~~~~~~llqnaaaia~mksaIg~tNaAV~~lsDai~klGnti~kisatl--~~nI~avNgRIs~Led~V 946 (1328)
T PHA03332 875 ALAVATLYVNQLLQATAATAEMASKIGGLNARVDKTSDVITKLGDTIAKISATL--DNNIRAVNGRVSDLEDQV 946 (1328)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--HhhHHHhcccHHHHHHHH
Confidence 344444455554444433 444444444444444 33444433333333322 234444555555444444
No 112
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=27.40 E-value=6e+02 Score=28.23 Aligned_cols=60 Identities=20% Similarity=0.160 Sum_probs=39.0
Q ss_pred HHHHhhcCCCCchh-hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007292 16 REVAKLLTLPDQLQ-FIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMIS 75 (609)
Q Consensus 16 ~~v~~ll~~p~~L~-kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~ 75 (609)
..++.+.+.--||+ ++..+..++.-...+++.+|..+-...-...+..++.|..-++.+.
T Consensus 351 ~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~ 411 (531)
T PF15450_consen 351 DSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEME 411 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556676 8888888888888888888887744444445555555555554443
No 113
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=27.17 E-value=8.2e+02 Score=26.40 Aligned_cols=44 Identities=14% Similarity=0.240 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHchHHHHHHHHHHHHHHHHHHHHh
Q 007292 71 EQMISQLRENFISIERYCQECQTLIENHDQIKLLSNARNNLSTTLKDVE 119 (609)
Q Consensus 71 ~~~v~~l~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~t~~~l~ 119 (609)
+++|..||+++..+.+... .+.|+..|++.-+-.++.+-|..|+
T Consensus 275 q~Ei~~LKqeLa~~EEK~~-----Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 275 QNEIYNLKQELASMEEKMA-----YQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHhHHHHHH-----HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 6666677777766664433 1334444444444455544455554
No 114
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=27.17 E-value=5.1e+02 Score=24.41 Aligned_cols=19 Identities=11% Similarity=0.041 Sum_probs=4.8
Q ss_pred HHHHHHHHhhHHHHHHHHH
Q 007292 35 KADYIARQQANDSQLSTMV 53 (609)
Q Consensus 35 ~~~~~~~k~s~~~qLk~~v 53 (609)
..+++++.+++-++|...|
T Consensus 100 s~QVqqeL~~tf~rL~~~V 118 (171)
T PF04799_consen 100 SHQVQQELSSTFARLCQQV 118 (171)
T ss_dssp ----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555544
No 115
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=26.74 E-value=4.7e+02 Score=23.46 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHch-HHHHHHHHHHHHHHHHHHHHhhhh
Q 007292 73 MISQLRENFISIERYCQECQTLIENH-DQIKLLSNARNNLSTTLKDVEGMM 122 (609)
Q Consensus 73 ~v~~l~~~~~~i~~~~~~~~~~v~~~-~~Ik~l~~~~~nl~~t~~~l~~l~ 122 (609)
.++++...+..+-....+-+....+| ..++++...+.++.++-..++.+.
T Consensus 57 riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~els~~L~~~~~lL~~~v 107 (131)
T PF10158_consen 57 RIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVNELSQQLSRCQSLLNQTV 107 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555 666677777777776655555543
No 116
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=26.30 E-value=3.7e+02 Score=22.15 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=16.2
Q ss_pred CCCchhhHHHHHHHHHHHHhhHHHHHHHH
Q 007292 24 LPDQLQFIGDMKADYIARQQANDSQLSTM 52 (609)
Q Consensus 24 ~p~~L~kl~~l~~~~~~~k~s~~~qLk~~ 52 (609)
+|.|++++-..-.+...+..+...+|...
T Consensus 9 d~~d~~~~l~~Q~~~l~~ln~tn~~L~~~ 37 (88)
T PF10241_consen 9 DPEDLDEILALQAQTLGRLNKTNEELLNL 37 (88)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666665555555555555544433
No 117
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=26.23 E-value=7.4e+02 Score=29.26 Aligned_cols=61 Identities=10% Similarity=0.169 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Q 007292 30 FIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLA-LSEQMISQLRENFISIERYCQEC 91 (609)
Q Consensus 30 kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~-~a~~~v~~l~~~~~~i~~~~~~~ 91 (609)
.+.+....+..=..+++. +...+.+.-.+-++|...|. +....+..+.+.-....+.|...
T Consensus 253 ~v~~~~~el~~~~~ave~-m~~~L~~~~s~~~~~~~~lr~~~~~sL~~llq~~~c~~~~ca~~ 314 (865)
T KOG4331|consen 253 YVLSAAQELREMSEAVEN-MNDTLDSLGSQLNDGASKLRERVNASLKVLLQVVLCQKKDCASA 314 (865)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHhHHhHHHhhHHH
Confidence 444444555555555555 33333333333333444444 44444555555444444444433
No 118
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=26.17 E-value=1.3e+03 Score=28.53 Aligned_cols=7 Identities=43% Similarity=0.696 Sum_probs=3.0
Q ss_pred CCCchhh
Q 007292 24 LPDQLQF 30 (609)
Q Consensus 24 ~p~~L~k 30 (609)
+|+++..
T Consensus 1509 tpeqi~~ 1515 (1758)
T KOG0994|consen 1509 TPEQIQQ 1515 (1758)
T ss_pred CHHHHHH
Confidence 4444443
No 119
>PF09385 HisK_N: Histidine kinase N terminal; InterPro: IPR018984 This domain is found at the N-terminal of sensor histidine kinase proteins. ; PDB: 3PMC_B 3PMD_A.
Probab=26.11 E-value=4.9e+02 Score=23.44 Aligned_cols=77 Identities=14% Similarity=0.037 Sum_probs=57.0
Q ss_pred HHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007292 11 KEAAVREVAKLLTLPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERY 87 (609)
Q Consensus 11 ~~~a~~~v~~ll~~p~~L~kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~ 87 (609)
-.+-...+-+.+..+.+++-|..+-.++.++++..+..+...|.+---|-..-++.|..+--++++++--+.+|...
T Consensus 43 G~~~~~lvie~l~~~~~~~~i~~la~KiAkER~~A~iNIgeFVYN~NlGR~~~~~~l~~~~~~~~el~~~i~~IN~~ 119 (133)
T PF09385_consen 43 GEAMFELVIEYLREEISLEEIQQLAYKIAKERAEANINIGEFVYNVNLGRSELLKYLFKLGIDWNELQPIIEKINYF 119 (133)
T ss_dssp HHHHHHHHHHHHTTSS-GGGGHHHHHHHHHHHHHHT--THHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHhhHhHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 34556678999999999999999999999999999999999999888888777777776666666666666555543
No 120
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=26.05 E-value=7.4e+02 Score=25.51 Aligned_cols=49 Identities=24% Similarity=0.169 Sum_probs=33.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007292 42 QQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQE 90 (609)
Q Consensus 42 k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~ 90 (609)
.++-..+|+.-|+.-.+.++.-...-...-..|+++++.-.+|....++
T Consensus 39 ~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~e 87 (294)
T COG1340 39 LAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQE 87 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666666666777766666777778888888887777766665
No 121
>PF10911 DUF2717: Protein of unknown function (DUF2717); InterPro: IPR020121 The proteins in this entry are uncharacterised.
Probab=26.01 E-value=3.5e+02 Score=21.76 Aligned_cols=38 Identities=18% Similarity=0.317 Sum_probs=30.1
Q ss_pred HHHHhhcCCCCchhhHHHHHHHHHHHHhhHHHHHHHHH
Q 007292 16 REVAKLLTLPDQLQFIGDMKADYIARQQANDSQLSTMV 53 (609)
Q Consensus 16 ~~v~~ll~~p~~L~kl~~l~~~~~~~k~s~~~qLk~~v 53 (609)
+-|..++.+|+|+-.|+.--.++.+=.-.-....++++
T Consensus 3 ~~I~h~l~np~DiP~ipra~aeyLqvrfN~~yl~~sG~ 40 (77)
T PF10911_consen 3 KPIQHLLDNPDDIPDIPRAAAEYLQVRFNAAYLMASGI 40 (77)
T ss_pred chHHHHhcCCcccCCccHHHHHHHHHHhcHHHHHHhhh
Confidence 45788999999999999988888776666666666654
No 122
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=25.99 E-value=4e+02 Score=22.44 Aligned_cols=63 Identities=10% Similarity=0.191 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHch-HHHHHHHHHHHHH
Q 007292 49 LSTMVAEQIEQAQTGLESLAL----SEQMISQLRENFISIERYCQECQTLIENH-DQIKLLSNARNNL 111 (609)
Q Consensus 49 Lk~~v~~ql~~~~~gl~~L~~----a~~~v~~l~~~~~~i~~~~~~~~~~v~~~-~~Ik~l~~~~~nl 111 (609)
+...++++++++..-+..|.. +.....++.+....+...+.........+ +.+++++.+-.++
T Consensus 8 ~~~~v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V 75 (99)
T PF10046_consen 8 VSKYVESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQV 75 (99)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666655532 22333444444444444444444444444 3344444433333
No 123
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=25.78 E-value=9.8e+02 Score=26.83 Aligned_cols=93 Identities=11% Similarity=0.146 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHchHHHHHHH
Q 007292 30 FIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESL----ALSEQMISQLRENFISIERYCQECQTLIENHDQIKLLS 105 (609)
Q Consensus 30 kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L----~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~~~Ik~l~ 105 (609)
.|++-.+.-.|...-.+..|+..+..-.+..+ ++.-| ..++..|+.|+..+.-+...+.....--+.+.-|.+-+
T Consensus 210 TLe~R~~~~eR~RdlaEeNl~kEi~~~~~~l~-~l~~lc~~d~e~~e~~~kl~~~l~~l~~~~~rvss~AE~lGAv~QE~ 288 (538)
T PF05781_consen 210 TLEKRLKLEERSRDLAEENLKKEIENCLKLLE-SLAPLCWEDNESREIIQKLQKSLDVLHQCATRVSSRAEMLGAVHQES 288 (538)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 34444444444555555555555544443333 23223 34555666666666555555555544445555555555
Q ss_pred HHHHHHHHHHHHHhhhhc
Q 007292 106 NARNNLSTTLKDVEGMMS 123 (609)
Q Consensus 106 ~~~~nl~~t~~~l~~l~~ 123 (609)
++-+-..-.|+.+++|..
T Consensus 289 R~SkAvevM~qhvenLkr 306 (538)
T PF05781_consen 289 RVSKAVEVMIQHVENLKR 306 (538)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 544444444444444433
No 124
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=25.28 E-value=1.2e+03 Score=27.51 Aligned_cols=13 Identities=15% Similarity=0.232 Sum_probs=6.4
Q ss_pred HHHHHHHhhcCCC
Q 007292 13 AAVREVAKLLTLP 25 (609)
Q Consensus 13 ~a~~~v~~ll~~p 25 (609)
.-..+|-++|+++
T Consensus 504 sF~~~Ik~lL~r~ 516 (717)
T PF10168_consen 504 SFEKHIKSLLQRS 516 (717)
T ss_pred hHHHHHHHHhcCC
Confidence 3344455555553
No 125
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=25.24 E-value=6.9e+02 Score=24.93 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 007292 99 DQIKLLSNARNNLSTTLKDVEG 120 (609)
Q Consensus 99 ~~Ik~l~~~~~nl~~t~~~l~~ 120 (609)
..|..-.++++-|.++.+.|+.
T Consensus 249 ~~ieke~q~raeL~acEEkl~k 270 (311)
T PF04642_consen 249 AAIEKENQARAELNACEEKLKK 270 (311)
T ss_pred HHHhhHHHHHHHHHHHHHHHhc
Confidence 4444455555555554444443
No 126
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=25.23 E-value=3.5e+02 Score=28.31 Aligned_cols=65 Identities=17% Similarity=0.293 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHchHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHhhhcC
Q 007292 72 QMISQLRENFISIERYCQECQTLIENHDQIKLLSNARNNLSTTLKDVEGMMSISVEAAEAKDSLGD 137 (609)
Q Consensus 72 ~~v~~l~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~t~~~l~~l~~~~~~~~~~~~~l~~ 137 (609)
..+..+.+...++..+..+.. .+.+.+.+++++.-+..|..+....+.+....+.++..+.++.+
T Consensus 7 ~kl~~~~~r~~el~~~L~~p~-v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~ 71 (363)
T COG0216 7 EKLESLLERYEELEALLSDPE-VISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAE 71 (363)
T ss_pred HHHHHHHHHHHHHHHHhcCcc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556666666666666554 55777888888999999988888888888877777777777765
No 127
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=24.88 E-value=5.8e+02 Score=23.93 Aligned_cols=56 Identities=13% Similarity=0.213 Sum_probs=25.2
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 007292 28 LQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQ 92 (609)
Q Consensus 28 L~kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~ 92 (609)
|..++-=..+++.++.++....+.. .+.+...+.++ .+-++++++.+.++-|.+.+
T Consensus 81 l~~ld~~i~~l~ek~q~l~~t~s~v-eaEik~L~s~L--------t~eemQe~i~~L~kev~~~~ 136 (201)
T KOG4603|consen 81 LQVLDGKIVALTEKVQSLQQTCSYV-EAEIKELSSAL--------TTEEMQEEIQELKKEVAGYR 136 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc--------ChHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554433322 33333333222 23345555545554444444
No 128
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=23.25 E-value=7e+02 Score=24.28 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 007292 99 DQIKLLSNARNNLSTTLKDVEG 120 (609)
Q Consensus 99 ~~Ik~l~~~~~nl~~t~~~l~~ 120 (609)
.-.+.++.+.++|..++..+.+
T Consensus 30 ~a~k~~~~a~~~Fa~~L~~f~~ 51 (207)
T cd07635 30 AATKSLSAAQRKFAHSLRDFKF 51 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445667778888777777764
No 129
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=22.96 E-value=3.1e+02 Score=20.11 Aligned_cols=48 Identities=8% Similarity=0.195 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007292 28 LQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFIS 83 (609)
Q Consensus 28 L~kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~ 83 (609)
+.+|+.+-+++...-.++|.-++ -...|+..+..++..+.....++..
T Consensus 5 ~~~Le~Iv~~Le~~~~sLdes~~--------lyeeg~~l~~~c~~~L~~~e~~i~~ 52 (53)
T PF02609_consen 5 MERLEEIVEKLESGELSLDESLK--------LYEEGMELIKKCQERLEEAEQKIEE 52 (53)
T ss_dssp HHHHHHHHHHHHTT-S-HHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667777777766666654433 3455666777777777666666543
No 130
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=22.96 E-value=6.6e+02 Score=25.02 Aligned_cols=37 Identities=19% Similarity=0.139 Sum_probs=18.5
Q ss_pred HHHHhhcCCCCc---hhhHHHHHHHHHHHHhhHHHHHHHH
Q 007292 16 REVAKLLTLPDQ---LQFIGDMKADYIARQQANDSQLSTM 52 (609)
Q Consensus 16 ~~v~~ll~~p~~---L~kl~~l~~~~~~~k~s~~~qLk~~ 52 (609)
..+...+..|+. +.+.+.-|.+..+--..+|+||+.+
T Consensus 151 ~~lE~k~~~~~g~~~~~~~D~eR~qty~~a~nidsqLk~l 190 (254)
T KOG2196|consen 151 DPLETKLELQSGHTYLSRADVEREQTYKMAENIDSQLKRL 190 (254)
T ss_pred HHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444 4455555555555555555555544
No 131
>PF10372 YojJ: Bacterial membrane-spanning protein N-terminus; InterPro: IPR019457 This entry is found at the N terminus of a family of putative membrane-spanning bacterial proteins. These proteins often contain IPR003390 from INTERPRO towards the C terminus. ; PDB: 2FB5_A.
Probab=22.86 E-value=1.9e+02 Score=22.97 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 007292 47 SQLSTMVAEQIEQAQTGLESLALS 70 (609)
Q Consensus 47 ~qLk~~v~~ql~~~~~gl~~L~~a 70 (609)
..+|..++.+|+.+...+..+-.+
T Consensus 9 ~~~K~~lk~~L~~I~~~~~~i~~~ 32 (70)
T PF10372_consen 9 SPLKEQLKQYLEQIEEEISQIIQT 32 (70)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666666666666555444333
No 132
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.83 E-value=6.9e+02 Score=24.07 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHchHHHHHHHHHHHHHHHHHHHHhh
Q 007292 67 LALSEQMISQLRENFISIERYCQECQTLIENHDQIKLLSNARNNLSTTLKDVEG 120 (609)
Q Consensus 67 L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~t~~~l~~ 120 (609)
|++.-.++.++...+.++-+.|..+-+..+ ..+.+.++|..++..+..
T Consensus 4 l~~~E~~~~~l~~~l~kl~K~~~~~~~ag~------~~~~a~~~F~~~L~~~~~ 51 (200)
T cd07603 4 LEQVEADVSELETRLEKLLKLCNGMVDSGK------TYVNANSLFVNSLNDLSD 51 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhc
Confidence 455566777777777777766665544333 346667777777776665
No 133
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=22.67 E-value=2.9e+02 Score=23.44 Aligned_cols=18 Identities=0% Similarity=0.086 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHhhHHHH
Q 007292 31 IGDMKADYIARQQANDSQ 48 (609)
Q Consensus 31 l~~l~~~~~~~k~s~~~q 48 (609)
++.-++.+..+...+.++
T Consensus 34 ld~~~r~l~~~~e~lr~~ 51 (108)
T PF02403_consen 34 LDQERRELQQELEELRAE 51 (108)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444444
No 134
>PRK11637 AmiB activator; Provisional
Probab=22.57 E-value=1e+03 Score=25.82 Aligned_cols=27 Identities=4% Similarity=0.210 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 007292 67 LALSEQMISQLRENFISIERYCQECQT 93 (609)
Q Consensus 67 L~~a~~~v~~l~~~~~~i~~~~~~~~~ 93 (609)
|..+...++.+...+..++......+.
T Consensus 84 i~~~~~~i~~~~~~i~~~~~ei~~l~~ 110 (428)
T PRK11637 84 ISQASRKLRETQNTLNQLNKQIDELNA 110 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443
No 135
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=22.47 E-value=9e+02 Score=25.23 Aligned_cols=53 Identities=17% Similarity=0.269 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHh--hchHHH-HHHHHHhccHH--HHHHHHHHHHHH
Q 007292 140 ELINTYERLTALDGKRRFALAAAE--SHKEEV-GRLREYFEDVD--QIWETFEKTLWG 192 (609)
Q Consensus 140 ~LL~ah~~L~~Le~~rd~~l~~~~--~~~~d~-~~L~~~F~~v~--~l~~~f~~~l~~ 192 (609)
.|-.....|..+..-|...+..++ ...+|+ ..|....+..+ ..-+.|.++|-.
T Consensus 194 ~Lr~~l~~l~~lk~eR~~~~~~lk~~~~~ddI~~~ll~~~~~~~~~~~e~lf~~eL~k 251 (342)
T cd08915 194 SLRPLLNEVSELEKERERFISELEIKSRNNDILPKLITEYKKNGTTEFEDLFEEHLKK 251 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHhhccccchhHHHHHHHHHH
Confidence 355666667777777877766653 334553 33433333221 233445666543
No 136
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=22.45 E-value=1e+03 Score=25.75 Aligned_cols=21 Identities=10% Similarity=0.170 Sum_probs=13.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHH
Q 007292 34 MKADYIARQQANDSQLSTMVA 54 (609)
Q Consensus 34 l~~~~~~~k~s~~~qLk~~v~ 54 (609)
....+..+...++.++....+
T Consensus 255 ~i~~l~~~l~~le~~l~~l~~ 275 (444)
T TIGR03017 255 IIQNLKTDIARAESKLAELSQ 275 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777776643
No 137
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=22.41 E-value=6.6e+02 Score=23.66 Aligned_cols=99 Identities=10% Similarity=0.178 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhHHHHHchH
Q 007292 29 QFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMIS---------QLRENFISIERYCQECQTLIENHD 99 (609)
Q Consensus 29 ~kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~---------~l~~~~~~i~~~~~~~~~~v~~~~ 99 (609)
+....+-..+.++...+. +|-..++++.+.-+.-+..+..++..+. +..+.-..+..........+++|+
T Consensus 34 ~a~s~I~~~l~rR~dli~-~Lv~~v~~y~~~E~~~l~~v~~~R~~~~~~~~~~~~~~~~~~~~~l~~al~~l~~~~e~yP 112 (186)
T PF04011_consen 34 EAWSNIDVQLQRRHDLIP-NLVEIVKSYAKHEKETLTKVTKARSQANNLSDSADIQEFQQAEAELSQALSRLLAVVENYP 112 (186)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHH-TT-HHHHHHHHHHHHHHH---H--SHHHHHHHHHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHcCC
Q ss_pred HHHHH-----------------HHHHHHHHHHHHHHh-hhhchhHHH
Q 007292 100 QIKLL-----------------SNARNNLSTTLKDVE-GMMSISVEA 128 (609)
Q Consensus 100 ~Ik~l-----------------~~~~~nl~~t~~~l~-~l~~~~~~~ 128 (609)
++|.- ..+++.+..+.+..+ .+.++|..+
T Consensus 113 ~Lka~~~~~~l~~~l~~~E~~I~~aR~~YN~av~~yN~~i~~FP~~l 159 (186)
T PF04011_consen 113 ELKADENFQQLMAQLEETENRIAAARRAYNDAVRDYNTAIRQFPTNL 159 (186)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
No 138
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=22.40 E-value=1.3e+03 Score=27.08 Aligned_cols=49 Identities=20% Similarity=0.284 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007292 32 GDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLREN 80 (609)
Q Consensus 32 ~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~ 80 (609)
..++.++..+......+|..-+..+-.....-+..|...++.++.+++.
T Consensus 546 ~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ 594 (717)
T PF10168_consen 546 KVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRES 594 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333333333333444444444444333
No 139
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=22.12 E-value=3.7e+02 Score=22.98 Aligned_cols=72 Identities=10% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHhhcCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 007292 17 EVAKLLTLPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLIE 96 (609)
Q Consensus 17 ~v~~ll~~p~~L~kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~ 96 (609)
+++.-+-.-++++++.+-..+..++...++.++... =+++++.+|+-.+.++++........++
T Consensus 26 ~l~~~~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~L----------------Pt~~dv~~L~l~l~el~G~~~~l~~~l~ 89 (106)
T PF10805_consen 26 WLRRTYAKREDIEKLEERLDEHDRRLQALETKLEHL----------------PTRDDVHDLQLELAELRGELKELSARLQ 89 (106)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------------CCHHHHHHHHHHHHHHHhHHHHHHHHHH
Q ss_pred chHHHHHH
Q 007292 97 NHDQIKLL 104 (609)
Q Consensus 97 ~~~~Ik~l 104 (609)
.+..+-.+
T Consensus 90 ~v~~~~~l 97 (106)
T PF10805_consen 90 GVSHQLDL 97 (106)
T ss_pred HHHHHHHH
No 140
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=21.86 E-value=1.2e+03 Score=26.37 Aligned_cols=164 Identities=9% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHchHHHHHH-----HH
Q 007292 32 GDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLIENHDQIKLL-----SN 106 (609)
Q Consensus 32 ~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~~~Ik~l-----~~ 106 (609)
++++.++.+...++-.++... +++.+..-.-+......-..++.+++.-..++......++.+..+..-++. ..
T Consensus 220 ~Elk~~l~~~~~~i~~~ie~l-~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~ 298 (581)
T KOG0995|consen 220 DELKHRLEKYFTSIANEIEDL-KKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEM 298 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhhchhHH-----------HHHHHhhhcCChhHHHHHHHHH-HHHhHHHHHHHHHhhchHHHHHHHH
Q 007292 107 ARNNLSTTLKDVEGMMSISVE-----------AAEAKDSLGDDKELINTYERLT-ALDGKRRFALAAAESHKEEVGRLRE 174 (609)
Q Consensus 107 ~~~nl~~t~~~l~~l~~~~~~-----------~~~~~~~l~~~~~LL~ah~~L~-~Le~~rd~~l~~~~~~~~d~~~L~~ 174 (609)
.+.++....+..+.|..-.++ .++.+.|=.+-..|-.-...+. +++..+..+...- ..+..
T Consensus 299 l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~-------l~~~~ 371 (581)
T KOG0995|consen 299 LKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELK-------LEIED 371 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHH
Q ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007292 175 YFEDVDQIWETFEKTLWGYISNFYKLSKE 203 (609)
Q Consensus 175 ~F~~v~~l~~~f~~~l~~i~~~~l~~~~~ 203 (609)
.|+.+....-.+...+..+-..+.+...+
T Consensus 372 ~f~~le~~~~~~~~l~~~i~l~~~~~~~n 400 (581)
T KOG0995|consen 372 FFKELEKKFIDLNSLIRRIKLGIAENSKN 400 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 141
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=21.65 E-value=1.2e+03 Score=26.39 Aligned_cols=142 Identities=15% Similarity=0.132 Sum_probs=0.0
Q ss_pred CCchHhhHHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007292 1 MMSEDLGVEAKEAAVREVAKLLTLPDQLQFIGDMKADYIAR--QQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLR 78 (609)
Q Consensus 1 ~~~~~~~~~a~~~a~~~v~~ll~~p~~L~kl~~l~~~~~~~--k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~ 78 (609)
++.+++...+ ..|...+++ ..++..-++.+.+....- .+..|.+++.. .+.+..++..|.++...++...
T Consensus 218 sn~ekl~~~~-~~a~~~L~g---e~~~~~~~~~l~~a~~~l~~~~~~d~~l~~~----~~~l~ea~~~l~ea~~el~~~~ 289 (557)
T COG0497 218 SNSEKLAEAI-QNALELLSG---EDDTVSALSLLGRALEALEDLSEYDGKLSEL----AELLEEALYELEEASEELRAYL 289 (557)
T ss_pred hhHHHHHHHH-HHHHHHHhC---CCCchhHHHHHHHHHHHHHHhhccChhHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH-------HHHHHHHHHHhHHHHHch-HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHhhhcCC-hhHHHHHHHHH
Q 007292 79 EN-------FISIERYCQECQTLIENH-DQIKLLSNARNNLSTTLKDVEGMMSISVEAAEAKDSLGDD-KELINTYERLT 149 (609)
Q Consensus 79 ~~-------~~~i~~~~~~~~~~v~~~-~~Ik~l~~~~~nl~~t~~~l~~l~~~~~~~~~~~~~l~~~-~~LL~ah~~L~ 149 (609)
+. +.+|.........+.++| ..|..+-..+..+ .+.+..|....+..+.++..+..- ..++.+-..|+
T Consensus 290 ~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~---~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls 366 (557)
T COG0497 290 DELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKI---KEELAQLDNSEESLEALEKEVKKLKAELLEAAEALS 366 (557)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH---HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHh
Q 007292 150 ALDG 153 (609)
Q Consensus 150 ~Le~ 153 (609)
..+.
T Consensus 367 ~~R~ 370 (557)
T COG0497 367 AIRK 370 (557)
T ss_pred HHHH
No 142
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=21.43 E-value=1.6e+03 Score=27.63 Aligned_cols=53 Identities=15% Similarity=0.240 Sum_probs=29.5
Q ss_pred HHHHHHHHhHHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhh
Q 007292 145 YERLTALDGKRRFALAAAESHKEEVGRLREYFEDVDQIWETFEKTLWGYISNFYKLSK 202 (609)
Q Consensus 145 h~~L~~Le~~rd~~l~~~~~~~~d~~~L~~~F~~v~~l~~~f~~~l~~i~~~~l~~~~ 202 (609)
+..|..+|..|++-+..-+.|.+... +++|+.|.+.|.+.=..++...+.-.|
T Consensus 1210 ~d~laeiE~LrnErIKkHGaSkePLD-----lSDlDkLk~~LQ~iNQ~LV~~LIn~iR 1262 (1439)
T PF12252_consen 1210 NDRLAEIEFLRNERIKKHGASKEPLD-----LSDLDKLKGQLQKINQNLVKALINTIR 1262 (1439)
T ss_pred HhhhhHHHHHHHHHhhccCCCCCccc-----hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777778876666555554221 255666665555544444444444333
No 143
>PF10167 NEP: Uncharacterised conserved protein; InterPro: IPR019320 This entry represents the uncharacterised protein family UPF0402. It contains a characteristic NEP sequence motif. Their function is not known.
Probab=20.74 E-value=5.9e+02 Score=22.42 Aligned_cols=68 Identities=9% Similarity=0.153 Sum_probs=34.4
Q ss_pred hcCCCCchh--hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007292 21 LLTLPDQLQ--FIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQ 89 (609)
Q Consensus 21 ll~~p~~L~--kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~ 89 (609)
++-++.+|. +|.+..++-.=+......++... +.+++|..-.++---.+.+.+++....|..|.++..
T Consensus 23 ~~ANEPSlgLYrlQeHvrkslP~lv~~k~~v~~~-~~~~~g~~~D~eya~~aVksM~~a~~~F~nI~~lL~ 92 (118)
T PF10167_consen 23 IVANEPSLGLYRLQEHVRKSLPKLVELKKEVQEL-SQELQGACYDLEYAISAVKSMKKAESSFSNIQELLK 92 (118)
T ss_pred HHhcCchHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHhccceecHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344777776 67776666665555555555544 445555444333333333333333334444444443
No 144
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=20.50 E-value=5.4e+02 Score=22.41 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007292 55 EQIEQAQTGLESLALSEQMISQLRENFISI 84 (609)
Q Consensus 55 ~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i 84 (609)
.+++..+..+..|..+..++....+-+..+
T Consensus 13 ~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l 42 (126)
T TIGR00293 13 QQVESLQAQIAALRALIAELETAIETLEDL 42 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333334444444444444444444444333
No 145
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=20.33 E-value=1.1e+03 Score=25.25 Aligned_cols=62 Identities=10% Similarity=0.174 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHchHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHhhh
Q 007292 73 MISQLRENFISIERYCQECQTLIENHDQIKLLSNARNNLSTTLKDVEGMMSISVEAAEAKDSL 135 (609)
Q Consensus 73 ~v~~l~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~t~~~l~~l~~~~~~~~~~~~~l 135 (609)
++..++.++.++.....+. ....+-...+.+...+..+...++.++.+....+.++.+.+++
T Consensus 24 ~l~~~~~~~~~le~~~~~p-~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~l~el~ 85 (364)
T TIGR00020 24 DPEKKKARLEELEKEMEDP-NFWNDQERAQAVIKERSSLEAVLDTLEELKNSLEDLSELLELA 85 (364)
T ss_pred CHHHHHHHHHHHHHHhcCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555444332 2333444555556666677666666666666555555454444
Done!